Correlation between gene mutation status and molecular subtypes
Colorectal Adenocarcinoma (Primary solid tumor)
28 January 2016  |  analyses__2016_01_28
Maintainer Information
Citation Information
doi:10.7908/C1V987D7
Maintained by TCGA GDAC Team (Broad Institute/MD Anderson Cancer Center/Harvard Medical School)
Cite as Broad Institute TCGA Genome Data Analysis Center (2016): Correlation between gene mutation status and molecular subtypes. Broad Institute of MIT and Harvard. doi:10.7908/C1V987D7
Overview
Introduction

This pipeline computes the correlation between significantly recurrent gene mutations and molecular subtypes.

Summary

Testing the association between mutation status of 2222 genes and 12 molecular subtypes across 489 patients, 5558 significant findings detected with P value < 0.05 and Q value < 0.25.

  • APC mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • TP53 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • ARID1A mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • RNF43 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • CRIPAK mutation correlated to 'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • SOX9 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • FAM123B mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • ZFP36L2 mutation correlated to 'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • B2M mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • TXNDC2 mutation correlated to 'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • ACVR1B mutation correlated to 'CN_CNMF' and 'MIRSEQ_MATURE_CNMF'.

  • CDH1 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • MLH1 mutation correlated to 'CN_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • BCOR mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • SMAD2 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CNMF'.

  • WNT1 mutation correlated to 'CN_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • FMN2 mutation correlated to 'CN_CNMF',  'RPPA_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • GGT1 mutation correlated to 'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.

  • STARD3NL mutation correlated to 'CN_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • SELPLG mutation correlated to 'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.

  • OR4D10 mutation correlated to 'MRNA_CNMF'.

  • NF2 mutation correlated to 'CN_CNMF',  'RPPA_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • MAPK6 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • FAM9A mutation correlated to 'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • EGR1 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • PRKDC mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • RPTN mutation correlated to 'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • THOC7 mutation correlated to 'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • NF1 mutation correlated to 'MRNA_CNMF',  'RPPA_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • FBXW7 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'RPPA_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • CHUK mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'METHLYATION_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • ATXN3L mutation correlated to 'MIRSEQ_CNMF' and 'MIRSEQ_CHIERARCHICAL'.

  • MGA mutation correlated to 'CN_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • TPRKB mutation correlated to 'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • MVK mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • ZBTB20 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • BCL9 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • ERBB2 mutation correlated to 'RPPA_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • P2RY13 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • ST3GAL6 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • PLEKHF2 mutation correlated to 'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • NR1H3 mutation correlated to 'CN_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.

  • ALPK2 mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • ASXL1 mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • ALG12 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF', and 'MRNASEQ_CNMF'.

  • PTCH1 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'RPPA_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • GRB2 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • NLRC4 mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • PLAGL2 mutation correlated to 'CN_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • C11ORF30 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'RPPA_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • DIP2B mutation correlated to 'MRNA_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • PRRG1 mutation correlated to 'RPPA_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • PIK3R1 mutation correlated to 'RPPA_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • IFT57 mutation correlated to 'MRNASEQ_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • RSPH3 mutation correlated to 'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • ROS1 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'RPPA_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • MPHOSPH10 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • VCX2 mutation correlated to 'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • C2ORF29 mutation correlated to 'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • DDX26B mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.

  • RBPJ mutation correlated to 'CN_CNMF'.

  • SMAD4 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • SLC26A8 mutation correlated to 'MRNA_CNMF',  'CN_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • RBBP7 mutation correlated to 'MRNA_CNMF'.

  • RB1 mutation correlated to 'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • L1TD1 mutation correlated to 'MRNA_CNMF',  'CN_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • TOP2B mutation correlated to 'CN_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • DCLK2 mutation correlated to 'MRNA_CNMF' and 'RPPA_CNMF'.

  • FKBP9 mutation correlated to 'MRNA_CNMF',  'CN_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • PTEN mutation correlated to 'MRNA_CNMF',  'RPPA_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • C14ORF184 mutation correlated to 'MIRSEQ_CNMF'.

  • HLA-A mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • BMPR2 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • FYN mutation correlated to 'MRNA_CNMF' and 'CN_CNMF'.

  • ALDH1A3 mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • LARP4B mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • ZDHHC7 mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'RPPA_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • GPATCH8 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • BCORL1 mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • SETD2 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • MAP4K3 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • SLC12A6 mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • CDK12 mutation correlated to 'CN_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • NEXN mutation correlated to 'MRNA_CNMF',  'RPPA_CNMF', and 'RPPA_CHIERARCHICAL'.

  • GMPS mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'RPPA_CNMF', and 'MIRSEQ_MATURE_CNMF'.

  • BIRC3 mutation correlated to 'MRNA_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • IDH1 mutation correlated to 'MRNA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.

  • ZNF486 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • ATM mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • HIST1H1T mutation correlated to 'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • CREBBP mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • GMNN mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • CTNNB1 mutation correlated to 'RPPA_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • KDM6A mutation correlated to 'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • CLSPN mutation correlated to 'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • FRMPD4 mutation correlated to 'MRNA_CNMF',  'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • SAPS2 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • MYST4 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • PRPH2 mutation correlated to 'MRNA_CNMF' and 'MRNA_CHIERARCHICAL'.

  • RBMX mutation correlated to 'RPPA_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • LDHA mutation correlated to 'RPPA_CNMF',  'RPPA_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • GFI1 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL', and 'MRNASEQ_CHIERARCHICAL'.

  • SLC9A10 mutation correlated to 'MRNA_CNMF',  'CN_CNMF', and 'RPPA_CNMF'.

  • OXSM mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'RPPA_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • NTAN1 mutation correlated to 'MRNA_CHIERARCHICAL',  'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • ICAM5 mutation correlated to 'CN_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • KCTD3 mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • RBM44 mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • KIAA1586 mutation correlated to 'MRNA_CNMF'.

  • CDX2 mutation correlated to 'CN_CNMF',  'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • EXD2 mutation correlated to 'CN_CNMF'.

  • CLEC4F mutation correlated to 'CN_CNMF' and 'MIRSEQ_MATURE_CNMF'.

  • NAA25 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL', and 'CN_CNMF'.

  • FIGNL1 mutation correlated to 'MRNA_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • SHROOM4 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • CASP8 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • HPS3 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • GLI1 mutation correlated to 'CN_CNMF',  'RPPA_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.

  • BCL9L mutation correlated to 'CN_CNMF',  'RPPA_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • TPM4 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • CYLD mutation correlated to 'RPPA_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • AMOT mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • GNPAT mutation correlated to 'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • PRKAA2 mutation correlated to 'CN_CNMF'.

  • TMEM126A mutation correlated to 'MRNASEQ_CHIERARCHICAL' and 'MIRSEQ_CNMF'.

  • OSBPL11 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL', and 'MRNASEQ_CHIERARCHICAL'.

  • MLLT6 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • USP24 mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • ARFGEF1 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • OR5V1 mutation correlated to 'MRNASEQ_CHIERARCHICAL' and 'MIRSEQ_CNMF'.

  • TRIP11 mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • SLK mutation correlated to 'MRNA_CNMF',  'CN_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • SLAMF7 mutation correlated to 'MRNASEQ_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • ATG5 mutation correlated to 'MRNASEQ_CHIERARCHICAL' and 'MIRSEQ_CHIERARCHICAL'.

  • SCAI mutation correlated to 'CN_CNMF'.

  • ECT2 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • DUSP1 mutation correlated to 'RPPA_CNMF' and 'MIRSEQ_CNMF'.

  • ZFX mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL', and 'MRNASEQ_CHIERARCHICAL'.

  • ATP11B mutation correlated to 'MRNA_CNMF' and 'RPPA_CNMF'.

  • NEFH mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • ECM2 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF', and 'METHLYATION_CNMF'.

  • CHD3 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • KLK10 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • DST mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'RPPA_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • KIAA1804 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • PIK3IP1 mutation correlated to 'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • C10ORF79 mutation correlated to 'MRNA_CNMF',  'CN_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • KRT2 mutation correlated to 'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • HTR2A mutation correlated to 'MRNA_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • PTK2 mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • AXIN2 mutation correlated to 'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • TM9SF2 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • FAHD2A mutation correlated to 'RPPA_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • C15ORF52 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • HAUS6 mutation correlated to 'MRNA_CNMF'.

  • TUBA4A mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • MBD6 mutation correlated to 'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • TFE3 mutation correlated to 'CN_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • NCAPD2 mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • NCOA6 mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • SVIL mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • XYLT2 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • ZNF789 mutation correlated to 'RPPA_CNMF'.

  • DDX43 mutation correlated to 'MIRSEQ_MATURE_CNMF'.

  • CEP135 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • IL12RB2 mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'RPPA_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • EHBP1 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • USP7 mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • IVL mutation correlated to 'MRNASEQ_CNMF'.

  • IDH2 mutation correlated to 'MRNA_CHIERARCHICAL'.

  • FGFR2 mutation correlated to 'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • MLL2 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'RPPA_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • LRRC39 mutation correlated to 'MRNASEQ_CHIERARCHICAL' and 'MIRSEQ_CHIERARCHICAL'.

  • ST8SIA6 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • CAB39L mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • ERBB4 mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • UGT3A2 mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • ARHGAP5 mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • EP400 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • MEN1 mutation correlated to 'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • SENP6 mutation correlated to 'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • OR7C2 mutation correlated to 'RPPA_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • PDGFRA mutation correlated to 'MRNA_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • KLC4 mutation correlated to 'MIRSEQ_CHIERARCHICAL'.

  • INTS4 mutation correlated to 'MRNASEQ_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • RBAK mutation correlated to 'MRNA_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.

  • FAM133B mutation correlated to 'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • GIGYF2 mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • RBM12 mutation correlated to 'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • EIF2AK4 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'RPPA_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • PI4K2B mutation correlated to 'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • HIPK2 mutation correlated to 'MRNA_CHIERARCHICAL',  'RPPA_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • SLC4A10 mutation correlated to 'CN_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • KLHL10 mutation correlated to 'CN_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • LINGO4 mutation correlated to 'MRNA_CHIERARCHICAL',  'CN_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • MMP13 mutation correlated to 'MRNA_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • DNAH12 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • UQCRC2 mutation correlated to 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • E2F7 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • FHOD3 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • MLL3 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • SCD5 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • DDX23 mutation correlated to 'MRNA_CNMF' and 'RPPA_CNMF'.

  • THOC5 mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • ADAM28 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • SGK269 mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • FLT3 mutation correlated to 'MRNA_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • RNF128 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • MOBKL2B mutation correlated to 'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • NT5DC3 mutation correlated to 'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • USP29 mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • USP34 mutation correlated to 'CN_CNMF',  'RPPA_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • F8 mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • SMTN mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • CARD11 mutation correlated to 'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • NUP188 mutation correlated to 'MRNA_CNMF',  'CN_CNMF', and 'MIRSEQ_MATURE_CNMF'.

  • PTPN3 mutation correlated to 'MIRSEQ_CNMF'.

  • NBEA mutation correlated to 'CN_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • CNIH4 mutation correlated to 'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • CD58 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • GMCL1 mutation correlated to 'MRNASEQ_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • AKAP3 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • RBMX2 mutation correlated to 'MRNASEQ_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • ZNF280B mutation correlated to 'MRNA_CNMF' and 'CN_CNMF'.

  • NCOA7 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • DENND4A mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • ALDH2 mutation correlated to 'MIRSEQ_CHIERARCHICAL'.

  • CCDC160 mutation correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.

  • TCF7L2 mutation correlated to 'CN_CNMF' and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • TOP2A mutation correlated to 'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • MIER3 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • FBXO21 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • MSH6 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • MMP8 mutation correlated to 'RPPA_CHIERARCHICAL'.

  • RAG1AP1 mutation correlated to 'RPPA_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • ALX4 mutation correlated to 'CN_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • OR51E1 mutation correlated to 'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • CBL mutation correlated to 'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • SLC28A2 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CNMF'.

  • UBQLN2 mutation correlated to 'CN_CNMF',  'RPPA_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • PPARGC1A mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • ATP6V1B1 mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • ZNF583 mutation correlated to 'MRNA_CNMF' and 'CN_CNMF'.

  • OSBPL2 mutation correlated to 'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • CRY1 mutation correlated to 'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • ZFYVE26 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • PALB2 mutation correlated to 'MRNA_CHIERARCHICAL',  'CN_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • PKD2L1 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • COLEC10 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • C2ORF77 mutation correlated to 'CN_CNMF'.

  • DHRS7 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • PANK3 mutation correlated to 'MIRSEQ_CHIERARCHICAL'.

  • G3BP2 mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'RPPA_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • TET3 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • C12ORF5 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • GPR98 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'RPPA_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • MAGEA1 mutation correlated to 'MRNASEQ_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • HNF1B mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • C12ORF40 mutation correlated to 'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • SNAI2 mutation correlated to 'RPPA_CNMF' and 'MRNASEQ_CNMF'.

  • DDX5 mutation correlated to 'RPPA_CNMF'.

  • PTPDC1 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • BAG4 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • BAZ1B mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'RPPA_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • PAQR5 mutation correlated to 'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • KDM3B mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • FAHD2B mutation correlated to 'CN_CNMF',  'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • ZCCHC6 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • TNMD mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • RNF182 mutation correlated to 'MRNASEQ_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • ERCC5 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • JAK3 mutation correlated to 'MRNA_CHIERARCHICAL'.

  • TRPM7 mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'RPPA_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • CAMSAP1L1 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • SLC33A1 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • F2RL1 mutation correlated to 'RPPA_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • USP26 mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • WEE1 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • ERBB2IP mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • B4GALNT4 mutation correlated to 'CN_CNMF',  'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • NSUN6 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • KDM5B mutation correlated to 'MRNA_CNMF'.

  • KRAS mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'METHLYATION_CNMF',  'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • GATA3 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • OVCH1 mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • MUC17 mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • RUNX1 mutation correlated to 'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • C9ORF84 mutation correlated to 'MRNA_CNMF',  'CN_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • NR4A2 mutation correlated to 'MRNA_CHIERARCHICAL'.

  • LATS1 mutation correlated to 'CN_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • ZNF449 mutation correlated to 'MRNA_CNMF',  'CN_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • PRDM1 mutation correlated to 'MRNASEQ_CHIERARCHICAL' and 'MIRSEQ_CNMF'.

  • MBTD1 mutation correlated to 'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • MKL2 mutation correlated to 'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • LIG1 mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • ZNF708 mutation correlated to 'MRNA_CNMF' and 'CN_CNMF'.

  • IL13RA2 mutation correlated to 'MRNASEQ_CHIERARCHICAL' and 'MIRSEQ_CNMF'.

  • FGFR3 mutation correlated to 'CN_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • PTPN12 mutation correlated to 'MRNA_CNMF',  'CN_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • TUBE1 mutation correlated to 'CN_CNMF'.

  • TGFBR2 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • OR1J2 mutation correlated to 'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • SPR mutation correlated to 'METHLYATION_CNMF',  'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • TRIM32 mutation correlated to 'MIRSEQ_CHIERARCHICAL'.

  • PKDREJ mutation correlated to 'CN_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • SYNE1 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • WNT16 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • ZNF189 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • TRRAP mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • C14ORF43 mutation correlated to 'MRNA_CHIERARCHICAL',  'CN_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • LHCGR mutation correlated to 'CN_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • ZC3H13 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • PRKCH mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • FNDC7 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • ZNF438 mutation correlated to 'RPPA_CHIERARCHICAL'.

  • NRAS mutation correlated to 'MRNA_CNMF'.

  • HIST1H1E mutation correlated to 'MRNASEQ_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • SLC24A2 mutation correlated to 'CN_CNMF'.

  • HORMAD1 mutation correlated to 'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • BRAF mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • DDX59 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • NLRP13 mutation correlated to 'MRNA_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • MKI67 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • MET mutation correlated to 'MRNA_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • PIK3C2A mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • ERBB3 mutation correlated to 'MRNA_CHIERARCHICAL',  'CN_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • CENPF mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'RPPA_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • TXNDC15 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • TSHR mutation correlated to 'CN_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • KIAA1012 mutation correlated to 'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • CHML mutation correlated to 'MRNA_CHIERARCHICAL',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • TGFBR1 mutation correlated to 'MRNA_CNMF',  'CN_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • ETAA1 mutation correlated to 'MRNA_CNMF'.

  • DEPDC5 mutation correlated to 'CN_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • DPCR1 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • RNF160 mutation correlated to 'CN_CNMF'.

  • MYO3B mutation correlated to 'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • TRIM23 mutation correlated to 'MRNA_CNMF'.

  • AGFG1 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • KCNS3 mutation correlated to 'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • GPR112 mutation correlated to 'MRNA_CHIERARCHICAL' and 'CN_CNMF'.

  • PTPRK mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • DCAF6 mutation correlated to 'MRNA_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • RAB28 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • ARHGEF10 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'RPPA_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • HEPACAM2 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • KCNH7 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'METHLYATION_CNMF',  'RPPA_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • AGBL2 mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • ACP6 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • UBC mutation correlated to 'MRNASEQ_CNMF'.

  • BRCA2 mutation correlated to 'CN_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • EZH2 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'RPPA_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • GABRA6 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • LYST mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • PPP2R1A mutation correlated to 'MRNASEQ_CHIERARCHICAL' and 'MIRSEQ_MATURE_CNMF'.

  • NUP54 mutation correlated to 'MRNASEQ_CHIERARCHICAL' and 'MIRSEQ_CHIERARCHICAL'.

  • FUBP3 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • TOB1 mutation correlated to 'MRNASEQ_CNMF'.

  • DAXX mutation correlated to 'RPPA_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • MARK1 mutation correlated to 'MRNA_CNMF' and 'CN_CNMF'.

  • ENPEP mutation correlated to 'MRNA_CNMF' and 'CN_CNMF'.

  • RING1 mutation correlated to 'CN_CNMF',  'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • NGEF mutation correlated to 'RPPA_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • KIR2DL3 mutation correlated to 'MIRSEQ_CNMF'.

  • SLC7A6 mutation correlated to 'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • JMJD1C mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'RPPA_CNMF',  'RPPA_CHIERARCHICAL', and 'MRNASEQ_CHIERARCHICAL'.

  • C6ORF170 mutation correlated to 'MRNA_CNMF' and 'CN_CNMF'.

  • MSH2 mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • EP300 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • SKIL mutation correlated to 'MRNASEQ_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • TIAL1 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • OR2T33 mutation correlated to 'MRNA_CNMF'.

  • SMC2 mutation correlated to 'MRNA_CHIERARCHICAL',  'CN_CNMF',  'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • C14ORF159 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • IQGAP2 mutation correlated to 'MRNA_CHIERARCHICAL',  'CN_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • DNAH11 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • EPHA7 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • DNAH8 mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • MACF1 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • IL1RAPL1 mutation correlated to 'CN_CNMF',  'RPPA_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.

  • WDR78 mutation correlated to 'MRNA_CNMF' and 'MRNA_CHIERARCHICAL'.

  • OR1I1 mutation correlated to 'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • ACOT9 mutation correlated to 'RPPA_CHIERARCHICAL'.

  • KIAA1797 mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • ODZ1 mutation correlated to 'CN_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • DMRTB1 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • NUP160 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • GRIA4 mutation correlated to 'METHLYATION_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • FBLN5 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • FBXO34 mutation correlated to 'CN_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • BRCA1 mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • INSRR mutation correlated to 'MRNA_CHIERARCHICAL',  'CN_CNMF',  'RPPA_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • FBN2 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • STAB2 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • ATP6V1A mutation correlated to 'METHLYATION_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • MRPS5 mutation correlated to 'CN_CNMF',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • UIMC1 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • LRP2 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'RPPA_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • DSG1 mutation correlated to 'MRNA_CNMF',  'CN_CNMF', and 'RPPA_CNMF'.

  • DKK2 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL', and 'MRNASEQ_CHIERARCHICAL'.

  • JAK2 mutation correlated to 'MRNA_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • HIVEP2 mutation correlated to 'MRNA_CNMF',  'CN_CNMF', and 'RPPA_CNMF'.

  • RELN mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • FLG2 mutation correlated to 'CN_CNMF' and 'MIRSEQ_MATURE_CNMF'.

  • HMCN1 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'RPPA_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • PIK3CA mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'RPPA_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • PRKD1 mutation correlated to 'CN_CNMF'.

  • ADAMTS19 mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'METHLYATION_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • CLVS2 mutation correlated to 'MRNA_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • GTF3C3 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • BAI3 mutation correlated to 'MRNA_CHIERARCHICAL' and 'MIRSEQ_CHIERARCHICAL'.

  • CNTNAP5 mutation correlated to 'CN_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • TMPRSS15 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • EGFR mutation correlated to 'MRNA_CHIERARCHICAL',  'RPPA_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • CTBP2 mutation correlated to 'MRNASEQ_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • APOB mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • EPHA3 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'RPPA_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • PTPN11 mutation correlated to 'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • KIAA1409 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • DOCK1 mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • GRM8 mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • NTRK3 mutation correlated to 'MRNA_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • ANKRD30A mutation correlated to 'RPPA_CNMF',  'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • MYH1 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • PHF3 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • PLCB2 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'RPPA_CHIERARCHICAL', and 'MRNASEQ_CHIERARCHICAL'.

  • PTPRD mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • CSMD3 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'RPPA_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • USH2A mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • MYEOV mutation correlated to 'MRNASEQ_CHIERARCHICAL' and 'MIRSEQ_CNMF'.

  • SCN3A mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • FKTN mutation correlated to 'CN_CNMF'.

  • KIRREL2 mutation correlated to 'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • PAK3 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • RAF1 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • ASNSD1 mutation correlated to 'MRNA_CNMF',  'CN_CNMF', and 'METHLYATION_CNMF'.

  • ABCC4 mutation correlated to 'CN_CNMF'.

  • CYLC1 mutation correlated to 'MRNASEQ_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • RNF111 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL', and 'MRNASEQ_CHIERARCHICAL'.

  • CLIP4 mutation correlated to 'MRNA_CNMF' and 'MRNA_CHIERARCHICAL'.

  • PLA2G4E mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • CLCNKA mutation correlated to 'MRNASEQ_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • ERCC6 mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • ALG2 mutation correlated to 'MRNA_CNMF' and 'MIRSEQ_CHIERARCHICAL'.

  • C9ORF131 mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • C6ORF89 mutation correlated to 'MRNA_CNMF' and 'CN_CNMF'.

  • ART5 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • CUL2 mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • CDC6 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • SOX7 mutation correlated to 'MRNA_CNMF',  'CN_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • ZNF644 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • XPOT mutation correlated to 'CN_CNMF',  'MRNASEQ_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • STK38L mutation correlated to 'MRNA_CNMF' and 'MIRSEQ_CNMF'.

  • SMARCA4 mutation correlated to 'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • UBR4 mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'RPPA_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • LPCAT3 mutation correlated to 'MIRSEQ_MATURE_CNMF'.

  • SLC2A3 mutation correlated to 'MRNASEQ_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • RUFY1 mutation correlated to 'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • PSD mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • CDC5L mutation correlated to 'CN_CNMF'.

  • ARID2 mutation correlated to 'MRNA_CHIERARCHICAL',  'CN_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • SCLT1 mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • ZFC3H1 mutation correlated to 'CN_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • OR2M3 mutation correlated to 'RPPA_CNMF',  'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • RNF145 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • TMEM169 mutation correlated to 'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • HAS2 mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • INSM2 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • SCLY mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • CDK17 mutation correlated to 'MRNA_CNMF',  'CN_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • GGTLC2 mutation correlated to 'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • SYNCRIP mutation correlated to 'MRNA_CNMF'.

  • IFITM3 mutation correlated to 'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • SMG1 mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'METHLYATION_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • RBL2 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • CASC1 mutation correlated to 'MRNA_CNMF' and 'CN_CNMF'.

  • LNX2 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL', and 'MRNASEQ_CHIERARCHICAL'.

  • N4BP2 mutation correlated to 'CN_CNMF',  'RPPA_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • KRT14 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • LNPEP mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • C5ORF34 mutation correlated to 'RPPA_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • MAP2K4 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • GOLGB1 mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • SYT1 mutation correlated to 'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • CLVS1 mutation correlated to 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • TTF1 mutation correlated to 'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • FGFR1 mutation correlated to 'RPPA_CHIERARCHICAL' and 'MRNASEQ_CNMF'.

  • OSMR mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • LASS3 mutation correlated to 'MRNA_CNMF'.

  • HGS mutation correlated to 'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.

  • PLEKHA6 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • MAP7D1 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • MPO mutation correlated to 'MRNA_CNMF'.

  • WBP11 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • RASA2 mutation correlated to 'RPPA_CHIERARCHICAL' and 'MRNASEQ_CHIERARCHICAL'.

  • PLCH2 mutation correlated to 'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • MEPE mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • RNASEL mutation correlated to 'CN_CNMF',  'RPPA_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • CCDC88A mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • ATP8B1 mutation correlated to 'CN_CNMF',  'RPPA_CNMF', and 'MRNASEQ_CNMF'.

  • LAMC1 mutation correlated to 'MRNA_CNMF'.

  • PLXNA3 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.

  • ITGAV mutation correlated to 'CN_CNMF',  'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • TAF12 mutation correlated to 'MRNASEQ_CNMF' and 'MIRSEQ_CNMF'.

  • ENPP3 mutation correlated to 'MRNA_CNMF',  'CN_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • OR4N4 mutation correlated to 'MRNA_CNMF'.

  • CHEK2 mutation correlated to 'RPPA_CNMF',  'RPPA_CHIERARCHICAL', and 'MRNASEQ_CHIERARCHICAL'.

  • GTF2IRD2 mutation correlated to 'RPPA_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • AKAP9 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • ABI3BP mutation correlated to 'MIRSEQ_MATURE_CNMF'.

  • ENTPD4 mutation correlated to 'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • SPCS2 mutation correlated to 'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • RAD51AP2 mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'METHLYATION_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • BMPR1A mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • MLL4 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • KIF21A mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'RPPA_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • ZNF286A mutation correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.

  • AK3L1 mutation correlated to 'RPPA_CNMF'.

  • PIK3C3 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • POLE mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • PNP mutation correlated to 'CN_CNMF'.

  • ZNF570 mutation correlated to 'MRNA_CNMF' and 'MIRSEQ_CHIERARCHICAL'.

  • TNPO1 mutation correlated to 'CN_CNMF'.

  • MAP9 mutation correlated to 'CN_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.

  • ITPR1 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • NME7 mutation correlated to 'MRNA_CNMF'.

  • TNFAIP3 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • ETV1 mutation correlated to 'MRNA_CNMF' and 'CN_CNMF'.

  • ACVR2A mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • RNF20 mutation correlated to 'CN_CNMF',  'RPPA_CNMF',  'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • ATG2B mutation correlated to 'MRNA_CNMF' and 'CN_CNMF'.

  • FRY mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • SCN2A mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • ALK mutation correlated to 'MRNA_CHIERARCHICAL' and 'CN_CNMF'.

  • SP4 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • IQSEC2 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • WWTR1 mutation correlated to 'MIRSEQ_MATURE_CNMF'.

  • ABLIM3 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL', and 'CN_CNMF'.

  • SNTN mutation correlated to 'MRNASEQ_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • DSG4 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • PCDH12 mutation correlated to 'MRNA_CNMF',  'CN_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • SLC7A10 mutation correlated to 'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • ZNF711 mutation correlated to 'MRNASEQ_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • REXO4 mutation correlated to 'CN_CNMF'.

  • ABCB4 mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • RASAL2 mutation correlated to 'RPPA_CHIERARCHICAL'.

  • ATAD5 mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • ZNF14 mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • CHRM3 mutation correlated to 'MRNASEQ_CHIERARCHICAL' and 'MIRSEQ_CNMF'.

  • GPR87 mutation correlated to 'MRNA_CHIERARCHICAL' and 'CN_CNMF'.

  • PRKCI mutation correlated to 'MRNA_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • SEC31A mutation correlated to 'CN_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • KIAA0319L mutation correlated to 'CN_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • BACE2 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • VAV2 mutation correlated to 'CN_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.

  • GAB1 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • RPA3 mutation correlated to 'RPPA_CHIERARCHICAL' and 'MIRSEQ_CNMF'.

  • OAS1 mutation correlated to 'MRNA_CNMF'.

  • ELFN2 mutation correlated to 'MRNASEQ_CHIERARCHICAL' and 'MIRSEQ_CHIERARCHICAL'.

  • ANAPC4 mutation correlated to 'MRNASEQ_CHIERARCHICAL' and 'MIRSEQ_CHIERARCHICAL'.

  • ITGB8 mutation correlated to 'MRNA_CNMF' and 'CN_CNMF'.

  • PAXIP1 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • IL18R1 mutation correlated to 'MIRSEQ_CNMF'.

  • IBTK mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • RTP3 mutation correlated to 'RPPA_CHIERARCHICAL' and 'MRNASEQ_CHIERARCHICAL'.

  • TAOK3 mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • KIF2C mutation correlated to 'MRNA_CNMF',  'RPPA_CHIERARCHICAL', and 'MRNASEQ_CHIERARCHICAL'.

  • C7ORF58 mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • PVRL4 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • MTDH mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • AIFM1 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • WNK4 mutation correlated to 'MRNA_CHIERARCHICAL',  'CN_CNMF',  'RPPA_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • POLM mutation correlated to 'CN_CNMF',  'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • RCSD1 mutation correlated to 'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • CSNK1D mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • GPNMB mutation correlated to 'MRNASEQ_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • ATP11C mutation correlated to 'CN_CNMF',  'RPPA_CNMF',  'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • IQGAP1 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • TRMT5 mutation correlated to 'CN_CNMF'.

  • MAP7D3 mutation correlated to 'MRNA_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • KCTD16 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • MFN1 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • ELF3 mutation correlated to 'MRNA_CHIERARCHICAL' and 'METHLYATION_CNMF'.

  • RBM19 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'RPPA_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • ADAMTS4 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • ASPM mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'RPPA_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • ZNF180 mutation correlated to 'MRNA_CNMF' and 'CN_CNMF'.

  • HYDIN mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • ARMCX5 mutation correlated to 'MRNA_CHIERARCHICAL',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • YLPM1 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • PLEK mutation correlated to 'MRNA_CNMF' and 'CN_CNMF'.

  • MST4 mutation correlated to 'MRNASEQ_CHIERARCHICAL' and 'MIRSEQ_CNMF'.

  • ANKHD1 mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • KDM5C mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL', and 'MRNASEQ_CHIERARCHICAL'.

  • IFIT2 mutation correlated to 'CN_CNMF' and 'MIRSEQ_CHIERARCHICAL'.

  • NUDCD1 mutation correlated to 'RPPA_CNMF'.

  • ZNF197 mutation correlated to 'CN_CNMF' and 'MIRSEQ_CHIERARCHICAL'.

  • DOCK5 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • TNRC6C mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • NIPA2 mutation correlated to 'MRNA_CHIERARCHICAL' and 'MIRSEQ_CHIERARCHICAL'.

  • NSUN2 mutation correlated to 'METHLYATION_CNMF' and 'RPPA_CNMF'.

  • CYP4X1 mutation correlated to 'MRNASEQ_CNMF' and 'MIRSEQ_CNMF'.

  • ZNF439 mutation correlated to 'CN_CNMF'.

  • KIAA0564 mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'RPPA_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • ATP8B2 mutation correlated to 'MRNA_CNMF',  'CN_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • PNPLA5 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • VPS13B mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • GPR22 mutation correlated to 'CN_CNMF',  'RPPA_CNMF',  'RPPA_CHIERARCHICAL', and 'MRNASEQ_CHIERARCHICAL'.

  • LRP6 mutation correlated to 'CN_CNMF'.

  • EFHC1 mutation correlated to 'MRNASEQ_CNMF'.

  • CDC7 mutation correlated to 'CN_CNMF'.

  • CD101 mutation correlated to 'MRNA_CNMF' and 'CN_CNMF'.

  • PTPRC mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • RIF1 mutation correlated to 'MRNA_CNMF',  'CN_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • LAS1L mutation correlated to 'MIRSEQ_CNMF'.

  • HSD17B11 mutation correlated to 'RPPA_CNMF'.

  • RHEB mutation correlated to 'MRNASEQ_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • KIAA0406 mutation correlated to 'MRNASEQ_CHIERARCHICAL' and 'MIRSEQ_CHIERARCHICAL'.

  • LRRC23 mutation correlated to 'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • FAM179A mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • WNK1 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • FRS3 mutation correlated to 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • EEF1D mutation correlated to 'CN_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • DOCK10 mutation correlated to 'MRNA_CNMF' and 'CN_CNMF'.

  • EXOC4 mutation correlated to 'MRNA_CHIERARCHICAL',  'CN_CNMF',  'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • CEACAM1 mutation correlated to 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • EIF5B mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • SF1 mutation correlated to 'MRNA_CHIERARCHICAL',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • BTNL3 mutation correlated to 'CN_CNMF',  'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • IKZF4 mutation correlated to 'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • ZNF564 mutation correlated to 'MRNA_CNMF'.

  • SLC46A3 mutation correlated to 'CN_CNMF'.

  • VAV3 mutation correlated to 'CN_CNMF' and 'RPPA_CNMF'.

  • RPGRIP1L mutation correlated to 'MRNA_CNMF',  'CN_CNMF', and 'MIRSEQ_MATURE_CNMF'.

  • GATA1 mutation correlated to 'MRNA_CNMF' and 'MIRSEQ_CHIERARCHICAL'.

  • KIF21B mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • HELQ mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • ZNF799 mutation correlated to 'RPPA_CHIERARCHICAL' and 'MRNASEQ_CHIERARCHICAL'.

  • CACHD1 mutation correlated to 'MRNA_CNMF',  'CN_CNMF', and 'RPPA_CNMF'.

  • CCDC93 mutation correlated to 'RPPA_CHIERARCHICAL'.

  • SYNRG mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'METHLYATION_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • TRIM33 mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • LPIN2 mutation correlated to 'CN_CNMF'.

  • TAB3 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • ZFP3 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'RPPA_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • ULK1 mutation correlated to 'METHLYATION_CNMF',  'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • CLDN10 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • RHPN2 mutation correlated to 'MRNA_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • IL1RL1 mutation correlated to 'MRNASEQ_CHIERARCHICAL' and 'MIRSEQ_CHIERARCHICAL'.

  • TOX mutation correlated to 'MRNA_CNMF',  'CN_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • SNX2 mutation correlated to 'CN_CNMF'.

  • HDAC5 mutation correlated to 'MRNASEQ_CHIERARCHICAL' and 'MIRSEQ_CHIERARCHICAL'.

  • SNRNP200 mutation correlated to 'CN_CNMF'.

  • ABCF3 mutation correlated to 'MRNA_CHIERARCHICAL',  'CN_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • ZMYM4 mutation correlated to 'CN_CNMF'.

  • WWC3 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'RPPA_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • OR7C1 mutation correlated to 'MRNA_CHIERARCHICAL'.

  • GRM7 mutation correlated to 'CN_CNMF',  'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.

  • RANBP1 mutation correlated to 'MRNASEQ_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • PAK7 mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • LUM mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • WDR66 mutation correlated to 'MRNA_CNMF' and 'CN_CNMF'.

  • IRAK3 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • ING2 mutation correlated to 'MRNASEQ_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • DNAJC11 mutation correlated to 'MRNA_CNMF',  'CN_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • CORO1C mutation correlated to 'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • ATP6V1D mutation correlated to 'MRNASEQ_CNMF' and 'MIRSEQ_CNMF'.

  • WNK3 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • C1ORF168 mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • SPANXC mutation correlated to 'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • KLKB1 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • SV2A mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • RAB40C mutation correlated to 'CN_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • DHX35 mutation correlated to 'MRNA_CNMF'.

  • SLC25A13 mutation correlated to 'MIRSEQ_CHIERARCHICAL'.

  • FAM26E mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • SAFB mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • YES1 mutation correlated to 'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • ACTL8 mutation correlated to 'MRNA_CNMF'.

  • OR4E2 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • PPP1R12A mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • ZNF721 mutation correlated to 'MRNA_CNMF',  'CN_CNMF', and 'RPPA_CNMF'.

  • KIFAP3 mutation correlated to 'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • SLC22A9 mutation correlated to 'MRNASEQ_CNMF'.

  • FOXN3 mutation correlated to 'MRNA_CHIERARCHICAL',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • IL2RG mutation correlated to 'CN_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • CARD6 mutation correlated to 'MRNA_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • BAZ2B mutation correlated to 'MRNA_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • ZNF384 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • MORC2 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • CYP4A22 mutation correlated to 'CN_CNMF' and 'MIRSEQ_CHIERARCHICAL'.

  • C14ORF102 mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • LPGAT1 mutation correlated to 'MRNASEQ_CHIERARCHICAL' and 'MIRSEQ_CNMF'.

  • EEA1 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • ADAM22 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • DDB1 mutation correlated to 'MRNA_CHIERARCHICAL',  'CN_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • GLI2 mutation correlated to 'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • ADAM30 mutation correlated to 'MRNA_CHIERARCHICAL',  'CN_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • RGS22 mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.

  • PPP1R3A mutation correlated to 'MRNA_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • CCR2 mutation correlated to 'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • OR4D2 mutation correlated to 'MRNASEQ_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • OR4M2 mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • EYS mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • ARNT2 mutation correlated to 'MRNA_CNMF' and 'MIRSEQ_CHIERARCHICAL'.

  • NIPBL mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • G2E3 mutation correlated to 'CN_CNMF'.

  • NOS3 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • EFEMP1 mutation correlated to 'RPPA_CNMF',  'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • SPANXN2 mutation correlated to 'MRNA_CNMF' and 'MRNA_CHIERARCHICAL'.

  • RPS6KA3 mutation correlated to 'MRNA_CNMF',  'CN_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • ICOSLG mutation correlated to 'MRNASEQ_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • PPIG mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • PTPRN mutation correlated to 'CN_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • THOC6 mutation correlated to 'MIRSEQ_CNMF' and 'MIRSEQ_CHIERARCHICAL'.

  • HNRNPH3 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • FSHR mutation correlated to 'MRNA_CNMF' and 'METHLYATION_CNMF'.

  • HUWE1 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • EIF2B5 mutation correlated to 'MRNASEQ_CNMF' and 'MIRSEQ_CNMF'.

  • USP9X mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • FAS mutation correlated to 'CN_CNMF'.

  • TJP1 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • INTS3 mutation correlated to 'MRNA_CHIERARCHICAL' and 'MIRSEQ_CHIERARCHICAL'.

  • DBN1 mutation correlated to 'MRNASEQ_CHIERARCHICAL' and 'MIRSEQ_CHIERARCHICAL'.

  • MCCC1 mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • ETF1 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • ALDOB mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • TFEC mutation correlated to 'MRNASEQ_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • ZNF83 mutation correlated to 'MRNA_CNMF' and 'CN_CNMF'.

  • CDC27 mutation correlated to 'MRNA_CNMF' and 'CN_CNMF'.

  • CD244 mutation correlated to 'MRNA_CNMF'.

  • UAP1L1 mutation correlated to 'METHLYATION_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • FAM189B mutation correlated to 'MRNA_CHIERARCHICAL',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • MIA3 mutation correlated to 'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • EFHC2 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL', and 'MRNASEQ_CHIERARCHICAL'.

  • PALLD mutation correlated to 'MRNA_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • SFRS18 mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • TAT mutation correlated to 'MRNA_CNMF',  'CN_CNMF', and 'MIRSEQ_MATURE_CNMF'.

  • ADAM18 mutation correlated to 'MIRSEQ_CHIERARCHICAL'.

  • ADNP2 mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • SLC22A16 mutation correlated to 'CN_CNMF',  'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • GSS mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • IGF2R mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • CRYGA mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • RNF10 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL', and 'CN_CNMF'.

  • NCAPD3 mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • MTTP mutation correlated to 'CN_CNMF',  'RPPA_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • HEPH mutation correlated to 'MRNA_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • MAP2 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • NOD2 mutation correlated to 'CN_CNMF',  'RPPA_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • PCDH20 mutation correlated to 'MRNASEQ_CHIERARCHICAL' and 'MIRSEQ_CHIERARCHICAL'.

  • OR5H15 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • ACTL6B mutation correlated to 'MIRSEQ_CHIERARCHICAL'.

  • ZNF167 mutation correlated to 'CN_CNMF'.

  • EIF4G2 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF', and 'RPPA_CNMF'.

  • PDP2 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • C4ORF49 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • KLRC3 mutation correlated to 'MIRSEQ_CHIERARCHICAL'.

  • RARS2 mutation correlated to 'MRNA_CNMF' and 'CN_CNMF'.

  • OR5K2 mutation correlated to 'CN_CNMF',  'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • GABRP mutation correlated to 'MRNASEQ_CNMF'.

  • CCT5 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • MRPS18B mutation correlated to 'RPPA_CHIERARCHICAL'.

  • LEF1 mutation correlated to 'CN_CNMF'.

  • CD55 mutation correlated to 'MRNA_CHIERARCHICAL' and 'MIRSEQ_CHIERARCHICAL'.

  • CIC mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'RPPA_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • ENSA mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • TMEM45A mutation correlated to 'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • TNNI3K mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL', and 'MRNASEQ_CHIERARCHICAL'.

  • PFN4 mutation correlated to 'MRNASEQ_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • GPR75 mutation correlated to 'CN_CNMF'.

  • LAX1 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • DHX36 mutation correlated to 'CN_CNMF',  'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • C13ORF23 mutation correlated to 'MRNASEQ_CHIERARCHICAL' and 'MIRSEQ_CHIERARCHICAL'.

  • MAPK9 mutation correlated to 'MIRSEQ_MATURE_CNMF'.

  • NRK mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • TMEM131 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • DOCK8 mutation correlated to 'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • FLNB mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • PTTG1IP mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • FUCA2 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • VN1R4 mutation correlated to 'MRNASEQ_CNMF'.

  • ARFIP1 mutation correlated to 'MRNA_CNMF' and 'CN_CNMF'.

  • UPF2 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • NLK mutation correlated to 'RPPA_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • ARHGAP32 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • PIK3R4 mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • GNAS mutation correlated to 'CN_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • TRIB1 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • VWCE mutation correlated to 'MRNASEQ_CHIERARCHICAL' and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • JMJD6 mutation correlated to 'MIRSEQ_CNMF'.

  • AGFG2 mutation correlated to 'MRNA_CHIERARCHICAL',  'CN_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • VWA5A mutation correlated to 'MRNA_CNMF',  'CN_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • BAIAP2L1 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • BRD4 mutation correlated to 'MRNA_CHIERARCHICAL',  'CN_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • GUCY1A3 mutation correlated to 'MRNA_CHIERARCHICAL',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • MCF2L2 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF', and 'MIRSEQ_MATURE_CNMF'.

  • DNAH17 mutation correlated to 'CN_CNMF',  'RPPA_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.

  • ANKRD17 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • PSMA2 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • ZKSCAN1 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • ERCC6L mutation correlated to 'MRNA_CNMF',  'CN_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • CXORF38 mutation correlated to 'MRNASEQ_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • C12ORF49 mutation correlated to 'MRNASEQ_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • VEZF1 mutation correlated to 'RPPA_CNMF',  'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • DNAH6 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • ATP12A mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • CYSLTR2 mutation correlated to 'MRNA_CNMF',  'RPPA_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • ZC3H6 mutation correlated to 'CN_CNMF'.

  • TMEM48 mutation correlated to 'CN_CNMF'.

  • C12ORF10 mutation correlated to 'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • OSTM1 mutation correlated to 'MRNASEQ_CHIERARCHICAL' and 'MIRSEQ_CNMF'.

  • BRD8 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • PER3 mutation correlated to 'MRNA_CNMF',  'CN_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • WT1 mutation correlated to 'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • METTL9 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • CDH10 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • HCRTR2 mutation correlated to 'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • MTF1 mutation correlated to 'MRNA_CNMF'.

  • KIAA0195 mutation correlated to 'CN_CNMF',  'RPPA_CNMF',  'RPPA_CHIERARCHICAL', and 'MRNASEQ_CHIERARCHICAL'.

  • FAM20B mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • EPHB1 mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • TXNDC17 mutation correlated to 'MRNASEQ_CHIERARCHICAL' and 'MIRSEQ_CNMF'.

  • HPSE mutation correlated to 'CN_CNMF',  'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • C9ORF71 mutation correlated to 'RPPA_CNMF',  'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • STYK1 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • LGR4 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • ACTL6A mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • UPF3A mutation correlated to 'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • MYH11 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • MED12L mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF', and 'METHLYATION_CNMF'.

  • ZNF620 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CNMF'.

  • NDUFAF1 mutation correlated to 'MRNASEQ_CNMF'.

  • ENPP1 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • CASP4 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • STK36 mutation correlated to 'CN_CNMF',  'RPPA_CNMF',  'MRNASEQ_CNMF', and 'MIRSEQ_CNMF'.

  • KIF16B mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • GPR141 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'RPPA_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • ZNF585A mutation correlated to 'MRNA_CNMF',  'CN_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • DIAPH2 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • ANKRD10 mutation correlated to 'MRNASEQ_CNMF',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • ASPG mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • CDK14 mutation correlated to 'MIRSEQ_CHIERARCHICAL'.

  • OR8A1 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • SPINT4 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • STRADB mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • RANBP17 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • AHCTF1 mutation correlated to 'MRNA_CNMF' and 'MIRSEQ_MATURE_CNMF'.

  • MATN3 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • HNMT mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • MYH3 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'RPPA_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • OR6C1 mutation correlated to 'MRNASEQ_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • GDE1 mutation correlated to 'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • ARHGAP11A mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • CHRM2 mutation correlated to 'CN_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • CEP290 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • A2M mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'RPPA_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • ADM mutation correlated to 'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • COL3A1 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • CCAR1 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • ZNF182 mutation correlated to 'MRNA_CNMF',  'CN_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • CXXC5 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • SPAG1 mutation correlated to 'METHLYATION_CNMF'.

  • KIAA0649 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • SPZ1 mutation correlated to 'CN_CNMF'.

  • DLL3 mutation correlated to 'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • PHF1 mutation correlated to 'MRNASEQ_CHIERARCHICAL' and 'MIRSEQ_CNMF'.

  • MAP4K4 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • CSNK2A2 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • CBX3 mutation correlated to 'METHLYATION_CNMF'.

  • MCART1 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF', and 'MRNASEQ_CNMF'.

  • USP28 mutation correlated to 'RPPA_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • ZBP1 mutation correlated to 'MIRSEQ_CHIERARCHICAL'.

  • MYLK4 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • FER mutation correlated to 'CN_CNMF',  'RPPA_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • GNA11 mutation correlated to 'MRNASEQ_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • TRAM1L1 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • MARVELD2 mutation correlated to 'CN_CNMF',  'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • PAX6 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • ZNF547 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • ADCY9 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • AGAP4 mutation correlated to 'METHLYATION_CNMF'.

  • OR11H12 mutation correlated to 'MIRSEQ_CNMF'.

  • SLC22A3 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • ATAD2B mutation correlated to 'CN_CNMF',  'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • GPR126 mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'RPPA_CHIERARCHICAL', and 'MRNASEQ_CNMF'.

  • CHMP4C mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • POLQ mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'RPPA_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • CLGN mutation correlated to 'CN_CNMF'.

  • EML4 mutation correlated to 'MRNA_CNMF'.

  • AP1G2 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • NOL9 mutation correlated to 'METHLYATION_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • DSC2 mutation correlated to 'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • C18ORF19 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • AWAT1 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • YSK4 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • GSTA5 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • BUB1B mutation correlated to 'MRNA_CNMF' and 'CN_CNMF'.

  • MC3R mutation correlated to 'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • SLC11A2 mutation correlated to 'MRNA_CNMF',  'CN_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • PTPRJ mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL', and 'MRNASEQ_CHIERARCHICAL'.

  • MAP3K4 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • CPS1 mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'RPPA_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • MDN1 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'RPPA_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • MFSD9 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • HSPA4L mutation correlated to 'MRNA_CNMF' and 'MRNA_CHIERARCHICAL'.

  • TBL1XR1 mutation correlated to 'MRNA_CNMF' and 'CN_CNMF'.

  • NXF3 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • SBNO1 mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • FLT1 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • SMC1B mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • HRSP12 mutation correlated to 'RPPA_CHIERARCHICAL'.

  • RRS1 mutation correlated to 'RPPA_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • CTCF mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • ANKRD50 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • PIGK mutation correlated to 'MRNA_CNMF' and 'MRNA_CHIERARCHICAL'.

  • COPB2 mutation correlated to 'MRNASEQ_CHIERARCHICAL' and 'MIRSEQ_CHIERARCHICAL'.

  • CIZ1 mutation correlated to 'MIRSEQ_CNMF' and 'MIRSEQ_MATURE_CNMF'.

  • EHHADH mutation correlated to 'METHLYATION_CNMF',  'MRNASEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • KDM2B mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • ITGB6 mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • ESCO1 mutation correlated to 'MRNA_CNMF',  'CN_CNMF', and 'MIRSEQ_MATURE_CNMF'.

  • SERPINB10 mutation correlated to 'MRNA_CNMF' and 'CN_CNMF'.

  • GRB14 mutation correlated to 'MRNA_CNMF'.

  • OR6K2 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • ARAP3 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'RPPA_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • SIRT4 mutation correlated to 'MRNA_CNMF' and 'CN_CNMF'.

  • MAP3K12 mutation correlated to 'MIRSEQ_MATURE_CNMF'.

  • FGD3 mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'METHLYATION_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • ACAT2 mutation correlated to 'CN_CNMF'.

  • PRRT2 mutation correlated to 'MRNASEQ_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • C14ORF50 mutation correlated to 'MRNA_CHIERARCHICAL'.

  • KCNG4 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • ANKRD23 mutation correlated to 'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • KIAA0556 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'RPPA_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • VPS13C mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • PARP1 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • EPC1 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • ST6GALNAC3 mutation correlated to 'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • BRSK1 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • FAM91A1 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • ZKSCAN2 mutation correlated to 'MRNA_CNMF' and 'MRNA_CHIERARCHICAL'.

  • HLA-B mutation correlated to 'CN_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • NHLRC2 mutation correlated to 'RPPA_CNMF',  'RPPA_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • BST2 mutation correlated to 'RPPA_CHIERARCHICAL' and 'MRNASEQ_CHIERARCHICAL'.

  • VASH1 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • CT47B1 mutation correlated to 'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • ZNF619 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • LIX1 mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • OR2Y1 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • KTN1 mutation correlated to 'MRNA_CHIERARCHICAL',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • CBLL1 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • CBLN3 mutation correlated to 'CN_CNMF',  'RPPA_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • LRRN3 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • WDR5B mutation correlated to 'RPPA_CNMF',  'RPPA_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • MERTK mutation correlated to 'MIRSEQ_CHIERARCHICAL'.

  • PRMT8 mutation correlated to 'MRNASEQ_CNMF'.

  • TCEAL5 mutation correlated to 'MRNASEQ_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • CTNNA3 mutation correlated to 'MRNA_CHIERARCHICAL',  'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • C14ORF39 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • SAPS3 mutation correlated to 'CN_CNMF'.

  • PHF14 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • MOV10 mutation correlated to 'MIRSEQ_CNMF'.

  • PTCH2 mutation correlated to 'MRNA_CHIERARCHICAL',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • POMGNT1 mutation correlated to 'MRNASEQ_CHIERARCHICAL' and 'MIRSEQ_CHIERARCHICAL'.

  • OR2A5 mutation correlated to 'MRNA_CNMF' and 'RPPA_CNMF'.

  • HAUS3 mutation correlated to 'MRNA_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • IFIH1 mutation correlated to 'MRNA_CNMF',  'METHLYATION_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • AKAP11 mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'RPPA_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • CRTC1 mutation correlated to 'CN_CNMF',  'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • PKHD1L1 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'RPPA_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • UFSP2 mutation correlated to 'CN_CNMF'.

  • MUC7 mutation correlated to 'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • RIMBP3 mutation correlated to 'MIRSEQ_CHIERARCHICAL'.

  • PCSK1 mutation correlated to 'MRNA_CNMF' and 'METHLYATION_CNMF'.

  • RTN4 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • KLF12 mutation correlated to 'RPPA_CNMF'.

  • VIM mutation correlated to 'CN_CNMF'.

  • GLG1 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • CETN3 mutation correlated to 'CN_CNMF',  'RPPA_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • SFRS15 mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • ADAMTSL3 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • CASP1 mutation correlated to 'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • B4GALT6 mutation correlated to 'CN_CNMF' and 'MIRSEQ_CHIERARCHICAL'.

  • RAD21 mutation correlated to 'MRNA_CHIERARCHICAL' and 'CN_CNMF'.

  • PTPN14 mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • FZD6 mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • C6ORF222 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • ANKRD26 mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • TDRD7 mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • MFSD6 mutation correlated to 'RPPA_CNMF'.

  • KIAA1632 mutation correlated to 'MRNA_CNMF' and 'CN_CNMF'.

  • ADK mutation correlated to 'MRNASEQ_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • PTPRB mutation correlated to 'MRNA_CNMF',  'CN_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • ATIC mutation correlated to 'MRNA_CHIERARCHICAL',  'CN_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • USP16 mutation correlated to 'MRNA_CNMF'.

  • OR4C15 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • ANK3 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • PPFIBP1 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'RPPA_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • NTNG1 mutation correlated to 'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • TRPA1 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • CWF19L2 mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • SERPINA9 mutation correlated to 'CN_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • SATB1 mutation correlated to 'RPPA_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.

  • FBXO45 mutation correlated to 'MRNASEQ_CNMF'.

  • MMP7 mutation correlated to 'MRNA_CHIERARCHICAL' and 'CN_CNMF'.

  • APAF1 mutation correlated to 'MRNA_CNMF' and 'MRNA_CHIERARCHICAL'.

  • POLD3 mutation correlated to 'CN_CNMF',  'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • CYP7B1 mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'METHLYATION_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • ZNF605 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • ITPR2 mutation correlated to 'MRNA_CNMF' and 'CN_CNMF'.

  • ZBTB33 mutation correlated to 'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • PHF21A mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • INADL mutation correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.

  • DDX17 mutation correlated to 'MRNA_CHIERARCHICAL',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • DMXL2 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • SLC38A9 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • HIST2H2AC mutation correlated to 'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • SLCO1B1 mutation correlated to 'MRNA_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • LBP mutation correlated to 'RPPA_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF', and 'MIRSEQ_CNMF'.

  • THUMPD3 mutation correlated to 'CN_CNMF',  'RPPA_CNMF', and 'MIRSEQ_MATURE_CNMF'.

  • GPSM2 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • LEO1 mutation correlated to 'MRNA_CNMF'.

  • SETX mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • ZBTB5 mutation correlated to 'CN_CNMF',  'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • HCLS1 mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • DNAJB9 mutation correlated to 'CN_CNMF'.

  • SMARCB1 mutation correlated to 'MRNASEQ_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • MTOR mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • RNF219 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • KIAA0528 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • GABPA mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • PPP2R2B mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • NEK1 mutation correlated to 'CN_CNMF'.

  • CEACAM6 mutation correlated to 'MIRSEQ_CNMF'.

  • MED14 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'RPPA_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • KRTAP12-3 mutation correlated to 'MRNASEQ_CNMF'.

  • EMR3 mutation correlated to 'MRNA_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • STAU2 mutation correlated to 'CN_CNMF' and 'RPPA_CNMF'.

  • GGA2 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • ATRNL1 mutation correlated to 'CN_CNMF',  'RPPA_CNMF',  'RPPA_CHIERARCHICAL', and 'MRNASEQ_CHIERARCHICAL'.

  • OSR1 mutation correlated to 'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • IRS4 mutation correlated to 'MRNA_CHIERARCHICAL',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • CEL mutation correlated to 'CN_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • ZHX2 mutation correlated to 'CN_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • STAT3 mutation correlated to 'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.

  • STK35 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • ASB11 mutation correlated to 'CN_CNMF',  'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • C7ORF50 mutation correlated to 'METHLYATION_CNMF',  'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • ATP13A5 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.

  • ZNF43 mutation correlated to 'MRNA_CNMF' and 'MIRSEQ_MATURE_CNMF'.

  • INPPL1 mutation correlated to 'MRNA_CHIERARCHICAL',  'RPPA_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • TFAP2C mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • GAD2 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • CCDC66 mutation correlated to 'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • C10ORF119 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • ZMYND8 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • NFASC mutation correlated to 'CN_CNMF' and 'MIRSEQ_MATURE_CNMF'.

  • ACTA1 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • EXPH5 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'METHLYATION_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • LEPRE1 mutation correlated to 'CN_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • COL6A5 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • RAB3C mutation correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.

  • MAP2K1 mutation correlated to 'CN_CNMF',  'MRNASEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • RRAS2 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • TMLHE mutation correlated to 'RPPA_CHIERARCHICAL'.

  • UGT1A1 mutation correlated to 'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • NCR3 mutation correlated to 'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • AP1M1 mutation correlated to 'MRNASEQ_CHIERARCHICAL' and 'MIRSEQ_MATURE_CNMF'.

  • FBXL4 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • KRT222 mutation correlated to 'MRNA_CNMF' and 'CN_CNMF'.

  • CDC42BPA mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • USP44 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • PLCG2 mutation correlated to 'CN_CNMF'.

  • RDBP mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • RAPGEF2 mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • GDA mutation correlated to 'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • PEBP4 mutation correlated to 'MRNASEQ_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • CYP2A6 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • STAT5B mutation correlated to 'MRNA_CNMF',  'CN_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • NCOA5 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • MCF2 mutation correlated to 'MRNA_CHIERARCHICAL',  'CN_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • PSD3 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • ARHGAP27 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • C20ORF117 mutation correlated to 'CN_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • NKTR mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • KLF5 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • PARG mutation correlated to 'CN_CNMF',  'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • OR6A2 mutation correlated to 'CN_CNMF',  'RPPA_CNMF', and 'MRNASEQ_CNMF'.

  • MAGI1 mutation correlated to 'CN_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • SLC44A4 mutation correlated to 'CN_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • GANAB mutation correlated to 'MRNASEQ_CNMF'.

  • SAMD9L mutation correlated to 'CN_CNMF' and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • CLPTM1 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • SCARA5 mutation correlated to 'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • RAPGEF6 mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • CEP164 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • PAK4 mutation correlated to 'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • DIMT1L mutation correlated to 'MRNASEQ_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • TAF2 mutation correlated to 'MRNA_CNMF',  'CN_CNMF', and 'MIRSEQ_MATURE_CNMF'.

  • NR3C1 mutation correlated to 'MRNA_CNMF' and 'METHLYATION_CNMF'.

  • HEATR4 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • BCAR3 mutation correlated to 'CN_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • OR2T34 mutation correlated to 'RPPA_CHIERARCHICAL'.

  • POLDIP3 mutation correlated to 'CN_CNMF' and 'MIRSEQ_CHIERARCHICAL'.

  • PNPLA8 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • C7ORF60 mutation correlated to 'MRNASEQ_CNMF'.

  • SLC25A17 mutation correlated to 'MRNA_CHIERARCHICAL',  'CN_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • KRTAP10-11 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • GTF3C1 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • WAC mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • TAF6 mutation correlated to 'MRNA_CNMF' and 'MRNA_CHIERARCHICAL'.

  • URGCP mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • CHRNA3 mutation correlated to 'MRNASEQ_CHIERARCHICAL' and 'MIRSEQ_CNMF'.

  • RUNX2 mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • ZNF354C mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • PACS2 mutation correlated to 'CN_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • HIF3A mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • ADH7 mutation correlated to 'MRNA_CNMF' and 'CN_CNMF'.

  • RYR2 mutation correlated to 'MRNA_CHIERARCHICAL',  'CN_CNMF',  'RPPA_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • DACT1 mutation correlated to 'CN_CNMF',  'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • TMC8 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • SULF2 mutation correlated to 'MRNA_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • AIM2 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • CPN2 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • ATRX mutation correlated to 'MRNA_CHIERARCHICAL',  'CN_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • ARMC9 mutation correlated to 'MRNA_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • SNAPC1 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • C20ORF151 mutation correlated to 'CN_CNMF'.

  • DNAJC7 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • NUP205 mutation correlated to 'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • TF mutation correlated to 'MRNA_CNMF'.

  • LRRC37B mutation correlated to 'MIRSEQ_CNMF'.

  • BCHE mutation correlated to 'MRNA_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • ZNF436 mutation correlated to 'MIRSEQ_CNMF'.

  • A1CF mutation correlated to 'MRNA_CNMF'.

  • TXLNG mutation correlated to 'MRNA_CNMF' and 'CN_CNMF'.

  • P2RX7 mutation correlated to 'MRNASEQ_CNMF'.

  • RCOR3 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • UCHL5 mutation correlated to 'RPPA_CHIERARCHICAL'.

  • NTRK2 mutation correlated to 'MRNA_CNMF',  'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • MFAP1 mutation correlated to 'MRNASEQ_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • RNF215 mutation correlated to 'MRNASEQ_CHIERARCHICAL' and 'MIRSEQ_CHIERARCHICAL'.

  • FANCD2 mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • CD34 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • ZSWIM3 mutation correlated to 'METHLYATION_CNMF'.

  • DDHD2 mutation correlated to 'MRNA_CHIERARCHICAL'.

  • F2R mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • CYP20A1 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • TCF7 mutation correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.

  • NUFIP1 mutation correlated to 'CN_CNMF'.

  • GNA14 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • PREX2 mutation correlated to 'MRNA_CHIERARCHICAL' and 'MRNASEQ_CHIERARCHICAL'.

  • NEB mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • ARHGEF1 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • VPS33A mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • FSTL4 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • PTPRG mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'METHLYATION_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • ATF2 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • GTF2A1L mutation correlated to 'RPPA_CNMF'.

  • MALT1 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • PSMD6 mutation correlated to 'CN_CNMF'.

  • DLEC1 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • DPP8 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL', and 'CN_CNMF'.

  • CAPRIN1 mutation correlated to 'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • MTA2 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • HPS6 mutation correlated to 'MIRSEQ_CHIERARCHICAL'.

  • AP4B1 mutation correlated to 'MIRSEQ_CHIERARCHICAL'.

  • STK38 mutation correlated to 'MRNASEQ_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • PRKCD mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'RPPA_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • RIMS2 mutation correlated to 'MRNA_CNMF',  'CN_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • LEMD1 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • RC3H2 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • ZFYVE16 mutation correlated to 'CN_CNMF',  'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • APOBEC4 mutation correlated to 'MRNA_CNMF',  'CN_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • ARID5A mutation correlated to 'MRNASEQ_CHIERARCHICAL' and 'MIRSEQ_MATURE_CNMF'.

  • BEND2 mutation correlated to 'MRNA_CNMF' and 'MRNA_CHIERARCHICAL'.

  • KCTD9 mutation correlated to 'CN_CNMF',  'RPPA_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • SBDS mutation correlated to 'METHLYATION_CNMF'.

  • KIFC2 mutation correlated to 'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • MCM4 mutation correlated to 'MRNA_CNMF',  'CN_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • ARHGEF3 mutation correlated to 'CN_CNMF',  'RPPA_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • KLF3 mutation correlated to 'RPPA_CHIERARCHICAL' and 'MRNASEQ_CHIERARCHICAL'.

  • SENP8 mutation correlated to 'MRNASEQ_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • KRT9 mutation correlated to 'CN_CNMF' and 'MIRSEQ_CHIERARCHICAL'.

  • CHD7 mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • CHD1 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • LRIG2 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • SAMD9 mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • CROT mutation correlated to 'RPPA_CNMF' and 'MIRSEQ_MATURE_CNMF'.

  • SULT1E1 mutation correlated to 'CN_CNMF'.

  • TTBK2 mutation correlated to 'MRNA_CNMF',  'CN_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • SMO mutation correlated to 'MRNASEQ_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • FBXO40 mutation correlated to 'CN_CNMF',  'RPPA_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • ARHGAP29 mutation correlated to 'CN_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • MED13 mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • ALCAM mutation correlated to 'MRNASEQ_CHIERARCHICAL' and 'MIRSEQ_CNMF'.

  • MEGF8 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • SLIT3 mutation correlated to 'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • KIF14 mutation correlated to 'MRNA_CNMF',  'CN_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • CDKL2 mutation correlated to 'MRNA_CNMF' and 'CN_CNMF'.

  • ITGA5 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • SULT1C4 mutation correlated to 'MRNA_CNMF' and 'MRNA_CHIERARCHICAL'.

  • C6ORF146 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • DYM mutation correlated to 'MRNA_CNMF'.

  • PCDH9 mutation correlated to 'CN_CNMF'.

  • MRE11A mutation correlated to 'MRNA_CNMF',  'CN_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • CASP10 mutation correlated to 'MIRSEQ_CHIERARCHICAL'.

  • TSHZ1 mutation correlated to 'MRNA_CNMF',  'CN_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • CCDC158 mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'METHLYATION_CNMF', and 'MRNASEQ_CNMF'.

  • BRD2 mutation correlated to 'CN_CNMF' and 'MIRSEQ_CHIERARCHICAL'.

  • GRM1 mutation correlated to 'MRNA_CHIERARCHICAL',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • WFDC10B mutation correlated to 'MRNASEQ_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • KIAA0240 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • PSMB8 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • BTF3L4 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • GON4L mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • NDST3 mutation correlated to 'CN_CNMF'.

  • MAGEA4 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • RPS6KA5 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL', and 'CN_CNMF'.

  • KLHL34 mutation correlated to 'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.

  • CDC73 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL', and 'RPPA_CNMF'.

  • MYH15 mutation correlated to 'MRNA_CNMF',  'CN_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • SPEN mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • IL1F8 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • CCR8 mutation correlated to 'MRNA_CHIERARCHICAL'.

  • HSPBAP1 mutation correlated to 'MRNASEQ_CHIERARCHICAL' and 'MIRSEQ_CNMF'.

  • XG mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • UHRF1BP1L mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • CATSPER2 mutation correlated to 'CN_CNMF'.

  • PPP2R5E mutation correlated to 'CN_CNMF'.

  • THRAP3 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'RPPA_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • ATP2B4 mutation correlated to 'MRNA_CNMF',  'CN_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • PCDHGA8 mutation correlated to 'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • TRIM46 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • TNKS mutation correlated to 'MRNA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • ADAM20 mutation correlated to 'MRNASEQ_CNMF'.

  • CDK5RAP2 mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • NXPH1 mutation correlated to 'MRNA_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • ATP10B mutation correlated to 'MRNASEQ_CHIERARCHICAL' and 'MIRSEQ_CNMF'.

  • ERGIC1 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • IVD mutation correlated to 'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • YTHDF2 mutation correlated to 'CN_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • KCNN4 mutation correlated to 'MRNASEQ_CHIERARCHICAL' and 'MIRSEQ_CHIERARCHICAL'.

  • C20ORF177 mutation correlated to 'MRNA_CNMF',  'RPPA_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • RBL1 mutation correlated to 'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • RBM15B mutation correlated to 'CN_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • PCDH19 mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • MOV10L1 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'RPPA_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • FAF2 mutation correlated to 'MRNA_CHIERARCHICAL'.

  • RBM15 mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • C5ORF42 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'RPPA_CHIERARCHICAL', and 'MRNASEQ_CHIERARCHICAL'.

  • BTBD3 mutation correlated to 'CN_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • NOVA1 mutation correlated to 'MRNASEQ_CHIERARCHICAL' and 'MIRSEQ_CHIERARCHICAL'.

  • SBSN mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • AGXT2L1 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CNMF'.

  • JAK1 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • CCDC110 mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • AFF1 mutation correlated to 'CN_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • MANBA mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL', and 'CN_CNMF'.

  • PROM1 mutation correlated to 'MRNA_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • AMBRA1 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • TBC1D10C mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • CD84 mutation correlated to 'CN_CNMF'.

  • DNMT1 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • TUT1 mutation correlated to 'CN_CNMF',  'RPPA_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • OR9G4 mutation correlated to 'MIRSEQ_CHIERARCHICAL'.

  • SPARCL1 mutation correlated to 'MRNA_CHIERARCHICAL',  'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • NBPF14 mutation correlated to 'MRNASEQ_CNMF'.

  • CCDC141 mutation correlated to 'MRNA_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • SSX2IP mutation correlated to 'MRNA_CNMF'.

  • CSPP1 mutation correlated to 'MRNA_CNMF' and 'CN_CNMF'.

  • CDS2 mutation correlated to 'MRNA_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • EPHA4 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • TMEM195 mutation correlated to 'MRNA_CNMF' and 'CN_CNMF'.

  • AGT mutation correlated to 'CN_CNMF'.

  • ARHGEF11 mutation correlated to 'MRNA_CNMF',  'CN_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • MRPS22 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • ABCG2 mutation correlated to 'CN_CNMF' and 'RPPA_CNMF'.

  • TMEM168 mutation correlated to 'MRNA_CNMF' and 'CN_CNMF'.

  • PANK1 mutation correlated to 'CN_CNMF'.

  • ARHGAP25 mutation correlated to 'METHLYATION_CNMF' and 'RPPA_CNMF'.

  • HCFC1R1 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • C7ORF66 mutation correlated to 'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • EPRS mutation correlated to 'MRNA_CNMF'.

  • DUSP9 mutation correlated to 'RPPA_CHIERARCHICAL',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • HIST1H1A mutation correlated to 'CN_CNMF'.

  • ZSCAN20 mutation correlated to 'METHLYATION_CNMF' and 'MRNASEQ_CNMF'.

  • ERCC3 mutation correlated to 'MRNA_CNMF',  'CN_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • XKR3 mutation correlated to 'CN_CNMF' and 'RPPA_CNMF'.

  • AAMP mutation correlated to 'MRNASEQ_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • IL21R mutation correlated to 'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • MBP mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • DLGAP5 mutation correlated to 'METHLYATION_CNMF'.

  • MAP7 mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • ZNF512 mutation correlated to 'MRNASEQ_CHIERARCHICAL' and 'MIRSEQ_CHIERARCHICAL'.

  • HIF1A mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • CD79A mutation correlated to 'MRNA_CHIERARCHICAL' and 'MIRSEQ_CHIERARCHICAL'.

  • HIVEP1 mutation correlated to 'MRNA_CNMF'.

  • C1S mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • OR8K3 mutation correlated to 'MRNA_CNMF' and 'METHLYATION_CNMF'.

  • NUP210L mutation correlated to 'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • RRAGD mutation correlated to 'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • BLM mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • CLCN3 mutation correlated to 'CN_CNMF',  'RPPA_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • ANKRD40 mutation correlated to 'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • SNAPC2 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • LMTK3 mutation correlated to 'CN_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • FCAMR mutation correlated to 'CN_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • CCNH mutation correlated to 'RPPA_CNMF'.

  • ITGA4 mutation correlated to 'MRNA_CNMF' and 'MIRSEQ_MATURE_CNMF'.

  • ST18 mutation correlated to 'CN_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • C6ORF150 mutation correlated to 'MRNA_CNMF' and 'MRNASEQ_CNMF'.

  • NAP1L4 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • MANF mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • CUX1 mutation correlated to 'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • SLC16A5 mutation correlated to 'RPPA_CNMF'.

  • SUPT3H mutation correlated to 'MRNA_CNMF'.

  • FAM151A mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • HERC1 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • TBX4 mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • TRIP6 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • SERPINB5 mutation correlated to 'MIRSEQ_CNMF'.

  • NLRP11 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL', and 'CN_CNMF'.

  • DZIP1L mutation correlated to 'CN_CNMF' and 'MIRSEQ_MATURE_CNMF'.

  • GSG2 mutation correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.

  • FAM193A mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • RUSC2 mutation correlated to 'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • TAF1 mutation correlated to 'MRNA_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • METTL5 mutation correlated to 'MIRSEQ_CHIERARCHICAL'.

  • ITPRIPL1 mutation correlated to 'METHLYATION_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • WFS1 mutation correlated to 'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • GOT1 mutation correlated to 'MRNA_CNMF' and 'MIRSEQ_CHIERARCHICAL'.

  • SRGAP3 mutation correlated to 'MRNASEQ_CHIERARCHICAL' and 'MIRSEQ_CHIERARCHICAL'.

  • MTMR8 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • GAB3 mutation correlated to 'CN_CNMF'.

  • GIMAP5 mutation correlated to 'MRNA_CNMF'.

  • ZEB1 mutation correlated to 'MRNA_CHIERARCHICAL',  'CN_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • CATSPER4 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CNMF'.

  • HECW2 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • CSGALNACT1 mutation correlated to 'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • SF3B2 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • ZNF232 mutation correlated to 'MRNASEQ_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • TRIM55 mutation correlated to 'CN_CNMF'.

  • IFITM5 mutation correlated to 'MRNASEQ_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • C9ORF125 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • IPPK mutation correlated to 'RPPA_CNMF'.

  • ARHGEF7 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL', and 'MRNASEQ_CHIERARCHICAL'.

  • WDR65 mutation correlated to 'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • APLP1 mutation correlated to 'MRNA_CHIERARCHICAL' and 'CN_CNMF'.

  • KIAA0319 mutation correlated to 'MRNA_CNMF',  'CN_CNMF', and 'MRNASEQ_CNMF'.

  • MECOM mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • MYO3A mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'RPPA_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • PIK3C2G mutation correlated to 'CN_CNMF'.

  • ABCD4 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • PCSK5 mutation correlated to 'MRNA_CNMF' and 'RPPA_CNMF'.

  • DLGAP3 mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • HECTD2 mutation correlated to 'MRNA_CNMF',  'CN_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • CDH18 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL', and 'CN_CNMF'.

  • SIX5 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • C1ORF85 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • CYP3A7 mutation correlated to 'MRNA_CNMF'.

  • DYRK3 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • ZBTB24 mutation correlated to 'MRNA_CNMF' and 'MIRSEQ_CHIERARCHICAL'.

  • TNRC6B mutation correlated to 'CN_CNMF' and 'MIRSEQ_CHIERARCHICAL'.

  • PAK1 mutation correlated to 'CN_CNMF'.

  • PODXL mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL', and 'CN_CNMF'.

  • OR5AK2 mutation correlated to 'MRNASEQ_CHIERARCHICAL' and 'MIRSEQ_CHIERARCHICAL'.

  • IRGQ mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • NLRP1 mutation correlated to 'CN_CNMF'.

  • TPR mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • METT5D1 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • BCAP29 mutation correlated to 'MRNASEQ_CNMF'.

  • BTBD11 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • ATAD1 mutation correlated to 'CN_CNMF'.

  • PRPF4B mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • ARHGEF6 mutation correlated to 'MRNA_CNMF' and 'CN_CNMF'.

  • HK3 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • TCEANC mutation correlated to 'MRNA_CNMF',  'CN_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • GJA10 mutation correlated to 'MRNA_CNMF' and 'CN_CNMF'.

  • ABCB6 mutation correlated to 'METHLYATION_CNMF'.

  • GGNBP2 mutation correlated to 'MRNA_CNMF'.

  • CCDC3 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • TATDN2 mutation correlated to 'MRNA_CNMF',  'CN_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • USP1 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • IFLTD1 mutation correlated to 'MRNA_CHIERARCHICAL'.

  • ZNF323 mutation correlated to 'MRNASEQ_CHIERARCHICAL' and 'MIRSEQ_MATURE_CNMF'.

  • ISOC2 mutation correlated to 'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • GLTSCR1 mutation correlated to 'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • LEPROTL1 mutation correlated to 'CN_CNMF',  'RPPA_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • OR9Q1 mutation correlated to 'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • ABHD2 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • HIST1H1B mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • MAGOHB mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • ATL1 mutation correlated to 'MRNA_CNMF',  'CN_CNMF', and 'METHLYATION_CNMF'.

  • ACRC mutation correlated to 'CN_CNMF' and 'MIRSEQ_CHIERARCHICAL'.

  • ZNF577 mutation correlated to 'MRNA_CNMF'.

  • ESR1 mutation correlated to 'MRNA_CHIERARCHICAL',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • SLC25A40 mutation correlated to 'MRNA_CNMF' and 'CN_CNMF'.

  • DHX32 mutation correlated to 'MRNASEQ_CNMF' and 'MIRSEQ_CHIERARCHICAL'.

  • BIRC6 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • MTIF2 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • IGDCC3 mutation correlated to 'MRNA_CNMF'.

  • ZNF124 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • SLC38A5 mutation correlated to 'MRNASEQ_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • C15ORF33 mutation correlated to 'MIRSEQ_CNMF'.

  • WEE2 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • MAOB mutation correlated to 'MIRSEQ_CNMF'.

  • REL mutation correlated to 'MRNA_CHIERARCHICAL',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • MMP27 mutation correlated to 'MRNA_CNMF'.

  • ZNF7 mutation correlated to 'MRNA_CNMF' and 'CN_CNMF'.

  • LDLRAD3 mutation correlated to 'CN_CNMF' and 'RPPA_CHIERARCHICAL'.

  • HOOK3 mutation correlated to 'CN_CNMF'.

  • METT10D mutation correlated to 'MRNA_CNMF',  'CN_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • PLD5 mutation correlated to 'MRNA_CHIERARCHICAL' and 'MIRSEQ_CHIERARCHICAL'.

  • SON mutation correlated to 'CN_CNMF' and 'MIRSEQ_MATURE_CNMF'.

  • ATP6V0A4 mutation correlated to 'CN_CNMF'.

  • CACNA1D mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • RCOR1 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • SPATA16 mutation correlated to 'MRNA_CHIERARCHICAL' and 'CN_CNMF'.

  • OR1L1 mutation correlated to 'MRNASEQ_CNMF'.

  • CCDC55 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • AASDH mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • ALAS1 mutation correlated to 'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • IGSF5 mutation correlated to 'CN_CNMF'.

  • MFRP mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • PIGN mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • TPK1 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • IGFN1 mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • GRK5 mutation correlated to 'CN_CNMF'.

  • ZNF555 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • NRAP mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • STAU1 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • KIAA1919 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • CTCFL mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL', and 'CN_CNMF'.

  • SFRS2IP mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • IKBKB mutation correlated to 'RPPA_CHIERARCHICAL'.

  • PPIL5 mutation correlated to 'MIRSEQ_CHIERARCHICAL'.

  • RNF8 mutation correlated to 'METHLYATION_CNMF'.

  • EPHA6 mutation correlated to 'MRNA_CNMF',  'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • KIAA1407 mutation correlated to 'MRNA_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • LIMCH1 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL', and 'CN_CNMF'.

  • ATAD2 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • ZNF594 mutation correlated to 'MRNA_CNMF' and 'RPPA_CNMF'.

  • ACTRT1 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL', and 'MRNASEQ_CHIERARCHICAL'.

  • CNTNAP3 mutation correlated to 'MRNA_CNMF'.

  • GRIN2B mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • GPR160 mutation correlated to 'CN_CNMF' and 'MIRSEQ_CHIERARCHICAL'.

  • EPHA2 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • ZBTB7C mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • CHM mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • MAPK14 mutation correlated to 'CN_CNMF'.

  • C12ORF11 mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'RPPA_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • AOX1 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • SLC12A2 mutation correlated to 'CN_CNMF',  'RPPA_CNMF', and 'MRNASEQ_CNMF'.

  • UGT2A1 mutation correlated to 'CN_CNMF' and 'MIRSEQ_CHIERARCHICAL'.

  • CXCR7 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • SSRP1 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • RELA mutation correlated to 'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • KCNA3 mutation correlated to 'MRNA_CNMF',  'CN_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • CPT1B mutation correlated to 'MRNA_CHIERARCHICAL',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • PLEKHH2 mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • MMP21 mutation correlated to 'MRNA_CNMF',  'CN_CNMF', and 'MIRSEQ_MATURE_CNMF'.

  • KSR2 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • ZNF443 mutation correlated to 'CN_CNMF'.

  • ACTN1 mutation correlated to 'MRNA_CNMF',  'CN_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • CCPG1 mutation correlated to 'CN_CNMF',  'RPPA_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • PIGC mutation correlated to 'MIRSEQ_CNMF'.

  • CNOT3 mutation correlated to 'RPPA_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • TYW3 mutation correlated to 'METHLYATION_CNMF' and 'MRNASEQ_CNMF'.

  • LPPR4 mutation correlated to 'MRNA_CHIERARCHICAL',  'CN_CNMF',  'METHLYATION_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • UBR2 mutation correlated to 'MRNA_CNMF'.

  • GPBP1 mutation correlated to 'METHLYATION_CNMF' and 'MRNASEQ_CNMF'.

  • SLC43A3 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF', and 'RPPA_CHIERARCHICAL'.

  • C5ORF36 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • CPLX4 mutation correlated to 'CN_CNMF'.

  • TEX2 mutation correlated to 'CN_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • ARHGAP28 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • STK33 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • GNG12 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.

  • ACPP mutation correlated to 'MRNA_CNMF'.

  • IMMT mutation correlated to 'MRNA_CNMF',  'MRNASEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • COLEC12 mutation correlated to 'CN_CNMF',  'RPPA_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • SCYL2 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • CAPRIN2 mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'RPPA_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • CNOT10 mutation correlated to 'CN_CNMF' and 'RPPA_CNMF'.

  • LUZP1 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • BAP1 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • CDHR5 mutation correlated to 'MRNA_CHIERARCHICAL',  'CN_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • TRAF3IP3 mutation correlated to 'MRNA_CNMF' and 'CN_CNMF'.

  • RXRA mutation correlated to 'CN_CNMF',  'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • DOPEY2 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • LAMB4 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL', and 'CN_CNMF'.

  • CUBN mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • ACVR1C mutation correlated to 'RPPA_CNMF'.

  • IFNA2 mutation correlated to 'MRNA_CHIERARCHICAL',  'CN_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • ATP1A4 mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • GUCY2F mutation correlated to 'MRNA_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • ZNF643 mutation correlated to 'MRNA_CNMF'.

  • DUSP7 mutation correlated to 'MRNASEQ_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • SOX6 mutation correlated to 'MRNA_CNMF',  'CN_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • APBA1 mutation correlated to 'CN_CNMF'.

  • RREB1 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • KIAA0355 mutation correlated to 'RPPA_CNMF'.

  • PTPN13 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • TNKS2 mutation correlated to 'MRNA_CNMF' and 'CN_CNMF'.

  • XPO4 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • TRIM36 mutation correlated to 'MRNASEQ_CNMF' and 'MIRSEQ_CHIERARCHICAL'.

  • DIAPH3 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CNMF'.

  • KDR mutation correlated to 'MRNA_CNMF',  'CN_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • STK40 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL', and 'MRNASEQ_CHIERARCHICAL'.

  • XRCC6 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • MRPL44 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • SMOX mutation correlated to 'MIRSEQ_CHIERARCHICAL'.

  • CENPJ mutation correlated to 'CN_CNMF',  'RPPA_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • DUSP16 mutation correlated to 'RPPA_CNMF'.

  • ZHX3 mutation correlated to 'CN_CNMF' and 'MIRSEQ_CHIERARCHICAL'.

  • EPHA5 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • SPAST mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • SIN3A mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • GLB1L2 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • OSBPL1A mutation correlated to 'CN_CNMF',  'RPPA_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • AFM mutation correlated to 'MRNA_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • YIPF1 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • TSPAN7 mutation correlated to 'MRNASEQ_CHIERARCHICAL' and 'MIRSEQ_CHIERARCHICAL'.

  • MLLT10 mutation correlated to 'CN_CNMF',  'RPPA_CNMF', and 'MIRSEQ_CNMF'.

  • CCDC6 mutation correlated to 'CN_CNMF'.

  • SGOL2 mutation correlated to 'MRNA_CNMF'.

  • HECW1 mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • C14ORF180 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • USP14 mutation correlated to 'CN_CNMF'.

  • TMEM144 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • HIST4H4 mutation correlated to 'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • ASTE1 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL', and 'CN_CNMF'.

  • FBXO38 mutation correlated to 'MRNA_CHIERARCHICAL',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • ZNF318 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'RPPA_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • NUP133 mutation correlated to 'MRNA_CNMF',  'CN_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • ARAF mutation correlated to 'MRNA_CHIERARCHICAL',  'CN_CNMF',  'RPPA_CNMF',  'RPPA_CHIERARCHICAL', and 'MRNASEQ_CHIERARCHICAL'.

  • MXRA5 mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • PAX2 mutation correlated to 'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • FZD3 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • LRRFIP2 mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • SEZ6L mutation correlated to 'CN_CNMF'.

  • ENTHD1 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • NEDD9 mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • GDF6 mutation correlated to 'MRNA_CNMF'.

  • G3BP1 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • CYP4F11 mutation correlated to 'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • UBE3C mutation correlated to 'MRNA_CNMF' and 'MIRSEQ_CHIERARCHICAL'.

  • LIPH mutation correlated to 'MIRSEQ_CHIERARCHICAL'.

  • GLT8D1 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • C20ORF43 mutation correlated to 'CN_CNMF'.

  • GOLIM4 mutation correlated to 'MRNA_CNMF' and 'CN_CNMF'.

  • MTMR1 mutation correlated to 'MRNA_CHIERARCHICAL' and 'CN_CNMF'.

  • TRPM6 mutation correlated to 'MRNA_CHIERARCHICAL',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • C17ORF71 mutation correlated to 'MRNA_CNMF' and 'MIRSEQ_CHIERARCHICAL'.

  • CDH24 mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • SMARCA1 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'METHLYATION_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • MORC1 mutation correlated to 'RPPA_CNMF' and 'MIRSEQ_MATURE_CNMF'.

  • ABL1 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • TTC13 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • ST14 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • MUC2 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.

  • CTTN mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • NFIB mutation correlated to 'CN_CNMF'.

  • IFNA1 mutation correlated to 'RPPA_CHIERARCHICAL' and 'MRNASEQ_CHIERARCHICAL'.

  • RGS3 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • CCDC89 mutation correlated to 'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • MIA2 mutation correlated to 'MIRSEQ_CHIERARCHICAL'.

  • IL3 mutation correlated to 'RPPA_CNMF' and 'MIRSEQ_CHIERARCHICAL'.

  • DCLRE1A mutation correlated to 'CN_CNMF' and 'MIRSEQ_CHIERARCHICAL'.

  • ORC4L mutation correlated to 'MRNA_CNMF' and 'CN_CNMF'.

  • LRRN1 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • KIAA1267 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • RPS6KA6 mutation correlated to 'MIRSEQ_MATURE_CNMF'.

  • GPRIN3 mutation correlated to 'MRNA_CHIERARCHICAL' and 'RPPA_CNMF'.

  • ATP2A2 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • ACCN5 mutation correlated to 'MRNA_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • LRRTM2 mutation correlated to 'METHLYATION_CNMF'.

  • ATR mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • FBLIM1 mutation correlated to 'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • CCDC14 mutation correlated to 'MRNA_CHIERARCHICAL' and 'CN_CNMF'.

  • MYO1D mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL', and 'CN_CNMF'.

  • ZNF608 mutation correlated to 'CN_CNMF'.

  • IDE mutation correlated to 'RPPA_CNMF'.

  • AGBL5 mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • LDLR mutation correlated to 'MRNA_CNMF' and 'MRNA_CHIERARCHICAL'.

  • NUF2 mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • ZNF521 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • OR4N2 mutation correlated to 'MRNASEQ_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • CELSR1 mutation correlated to 'MRNA_CHIERARCHICAL',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • SDAD1 mutation correlated to 'MRNASEQ_CHIERARCHICAL' and 'MIRSEQ_CNMF'.

  • PLCG1 mutation correlated to 'MRNASEQ_CHIERARCHICAL' and 'MIRSEQ_CHIERARCHICAL'.

  • SMC4 mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • NDUFV2 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • SYT2 mutation correlated to 'MRNA_CNMF' and 'MIRSEQ_CHIERARCHICAL'.

  • KIT mutation correlated to 'MRNA_CNMF',  'RPPA_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • ERMP1 mutation correlated to 'CN_CNMF'.

  • NOV mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • NTN4 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • XRN1 mutation correlated to 'CN_CNMF'.

  • FAM175A mutation correlated to 'MRNA_CNMF'.

  • CSF3R mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • SAMD4A mutation correlated to 'CN_CNMF'.

  • CCDC11 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • TRPM2 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • TRIP12 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • BBS2 mutation correlated to 'MRNA_CNMF',  'CN_CNMF', and 'RPPA_CNMF'.

  • KIF13A mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • KNTC1 mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • TRIM45 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • UEVLD mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • PEX2 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • C16ORF71 mutation correlated to 'MRNA_CNMF' and 'CN_CNMF'.

  • SLC6A3 mutation correlated to 'METHLYATION_CNMF',  'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • ZNF462 mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • HOXD9 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • MGEA5 mutation correlated to 'CN_CNMF'.

  • C7ORF33 mutation correlated to 'CN_CNMF'.

  • ATP2C2 mutation correlated to 'CN_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • DCAF8L1 mutation correlated to 'MRNA_CNMF' and 'CN_CNMF'.

  • CENPA mutation correlated to 'CN_CNMF'.

  • MST1R mutation correlated to 'CN_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • NONO mutation correlated to 'MRNASEQ_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • DYRK4 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • ZMIZ1 mutation correlated to 'MRNASEQ_CHIERARCHICAL' and 'MIRSEQ_CHIERARCHICAL'.

  • RALGAPB mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'RPPA_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • DCLRE1C mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • SLC9A9 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • C17ORF58 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • GORASP1 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • RAD18 mutation correlated to 'CN_CNMF',  'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • OR5H1 mutation correlated to 'MIRSEQ_CNMF'.

  • ROR1 mutation correlated to 'MRNA_CNMF',  'CN_CNMF', and 'RPPA_CNMF'.

  • RNASE2 mutation correlated to 'CN_CNMF'.

  • TRIO mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • CTSL1 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • KIF5B mutation correlated to 'MRNA_CHIERARCHICAL',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • SEMA3A mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • PCDHGA4 mutation correlated to 'MRNA_CHIERARCHICAL',  'CN_CNMF',  'RPPA_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • KBTBD8 mutation correlated to 'CN_CNMF'.

  • CPEB1 mutation correlated to 'CN_CNMF'.

  • SKIV2L2 mutation correlated to 'MRNA_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • AMPD1 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'METHLYATION_CNMF', and 'MRNASEQ_CNMF'.

  • MIPEP mutation correlated to 'MRNA_CNMF' and 'CN_CNMF'.

  • DDX11 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • VEPH1 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'RPPA_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • RBP3 mutation correlated to 'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • FAM160B1 mutation correlated to 'CN_CNMF' and 'RPPA_CHIERARCHICAL'.

  • UBD mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • OR8K1 mutation correlated to 'CN_CNMF'.

  • SLC30A8 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • MPZL1 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • CCDC112 mutation correlated to 'MRNA_CNMF',  'CN_CNMF', and 'RPPA_CNMF'.

  • TOMM70A mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • CDHR3 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • ZNF559 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL', and 'CN_CNMF'.

  • MAK mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • GPR156 mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • KIAA2018 mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • BMP10 mutation correlated to 'MIRSEQ_CNMF'.

  • FOXO4 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • SLITRK2 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • MTF2 mutation correlated to 'MRNA_CNMF',  'CN_CNMF', and 'RPPA_CHIERARCHICAL'.

  • MICAL1 mutation correlated to 'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • ZNF41 mutation correlated to 'MRNA_CNMF'.

  • SLC26A7 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • ARMC2 mutation correlated to 'MIRSEQ_MATURE_CNMF'.

  • CDH8 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • ADAM17 mutation correlated to 'MRNA_CNMF' and 'CN_CNMF'.

  • CHMP4B mutation correlated to 'CN_CNMF'.

  • TMPRSS5 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • TBC1D25 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • ZNF418 mutation correlated to 'MRNA_CNMF',  'CN_CNMF', and 'MRNASEQ_CNMF'.

  • GSTM4 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • PCDHGC4 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • KIAA1967 mutation correlated to 'MIRSEQ_CHIERARCHICAL'.

  • PTPN1 mutation correlated to 'MRNA_CNMF' and 'CN_CNMF'.

  • ZNF266 mutation correlated to 'RPPA_CHIERARCHICAL'.

  • ADAMTS16 mutation correlated to 'CN_CNMF' and 'MIRSEQ_MATURE_CNMF'.

  • MCM9 mutation correlated to 'MRNA_CNMF'.

  • MMP19 mutation correlated to 'MRNA_CHIERARCHICAL' and 'MIRSEQ_CHIERARCHICAL'.

  • ATG10 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • GIMAP8 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • TNXB mutation correlated to 'CN_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • ANKRD6 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • WDR17 mutation correlated to 'CN_CNMF'.

  • MRPL47 mutation correlated to 'MRNA_CNMF' and 'CN_CNMF'.

  • TRPV2 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • RAG1 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • IL8 mutation correlated to 'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • KLRK1 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL', and 'CN_CNMF'.

  • MGAT5 mutation correlated to 'MRNA_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • SPANXN3 mutation correlated to 'MRNASEQ_CHIERARCHICAL' and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • CYP27B1 mutation correlated to 'MRNA_CHIERARCHICAL' and 'CN_CNMF'.

  • CASC5 mutation correlated to 'CN_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • PRKCG mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • COL11A1 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • OR5L2 mutation correlated to 'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • EHBP1L1 mutation correlated to 'MRNASEQ_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • CNOT6L mutation correlated to 'RPPA_CHIERARCHICAL'.

  • C3ORF27 mutation correlated to 'MIRSEQ_CHIERARCHICAL'.

  • OTUD4 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • SFRS12IP1 mutation correlated to 'CN_CNMF'.

  • SBF1 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • MYST3 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • ZNF846 mutation correlated to 'MRNA_CNMF' and 'CN_CNMF'.

  • TEX11 mutation correlated to 'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • SORBS1 mutation correlated to 'CN_CNMF' and 'MIRSEQ_CHIERARCHICAL'.

  • GLT25D1 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • SETD7 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • C9ORF102 mutation correlated to 'MRNA_CNMF' and 'CN_CNMF'.

  • LSM14A mutation correlated to 'CN_CNMF'.

  • SMPDL3B mutation correlated to 'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.

  • KIF26A mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • C6ORF203 mutation correlated to 'CN_CNMF' and 'MIRSEQ_CHIERARCHICAL'.

  • GPR158 mutation correlated to 'CN_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • CSNK1E mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • RNF103 mutation correlated to 'MRNA_CNMF' and 'CN_CNMF'.

  • CEBPA mutation correlated to 'RPPA_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • IP6K3 mutation correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.

  • CLSTN1 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • EPC2 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • SKIV2L mutation correlated to 'CN_CNMF',  'MRNASEQ_CNMF', and 'MIRSEQ_CNMF'.

  • COL5A2 mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • SLC9A2 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • KIAA0196 mutation correlated to 'MRNA_CNMF'.

  • ANGPTL2 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • C2ORF49 mutation correlated to 'CN_CNMF' and 'MIRSEQ_CHIERARCHICAL'.

  • MUS81 mutation correlated to 'METHLYATION_CNMF',  'RPPA_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • AKT1 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • OGFRL1 mutation correlated to 'MRNA_CNMF',  'CN_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • VPS72 mutation correlated to 'CN_CNMF',  'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • TAX1BP1 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • SLCO6A1 mutation correlated to 'MRNA_CHIERARCHICAL' and 'RPPA_CNMF'.

  • TBCE mutation correlated to 'CN_CNMF'.

  • KIAA0922 mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • STK3 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • GLRA3 mutation correlated to 'MRNA_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • FKBP5 mutation correlated to 'MRNASEQ_CHIERARCHICAL' and 'MIRSEQ_CHIERARCHICAL'.

  • C6ORF15 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • ZC3H12C mutation correlated to 'MRNA_CNMF',  'CN_CNMF', and 'METHLYATION_CNMF'.

  • OR2F2 mutation correlated to 'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • SLC27A3 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • C6ORF70 mutation correlated to 'CN_CNMF'.

  • SFI1 mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • ELANE mutation correlated to 'MRNASEQ_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • QSER1 mutation correlated to 'MRNA_CNMF' and 'CN_CNMF'.

  • FER1L6 mutation correlated to 'MRNA_CNMF',  'RPPA_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • NUP107 mutation correlated to 'CN_CNMF' and 'MIRSEQ_CHIERARCHICAL'.

  • HIP1 mutation correlated to 'MIRSEQ_CHIERARCHICAL'.

  • AP3B1 mutation correlated to 'MIRSEQ_CHIERARCHICAL'.

  • LY75 mutation correlated to 'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • RRP9 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • CAPS2 mutation correlated to 'MRNASEQ_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • ESYT1 mutation correlated to 'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • KRT1 mutation correlated to 'MRNA_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • SUPT6H mutation correlated to 'CN_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • TRAF3 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • IPO11 mutation correlated to 'MRNA_CNMF' and 'MRNA_CHIERARCHICAL'.

  • AFF3 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • BTBD7 mutation correlated to 'MRNA_CNMF',  'CN_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • B3GALNT2 mutation correlated to 'MRNASEQ_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • OR4N5 mutation correlated to 'MRNASEQ_CNMF'.

  • GADD45GIP1 mutation correlated to 'MRNASEQ_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • STOX2 mutation correlated to 'METHLYATION_CNMF'.

  • TXNRD1 mutation correlated to 'RPPA_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • GABRB2 mutation correlated to 'MRNA_CNMF'.

  • NAA15 mutation correlated to 'CN_CNMF',  'RPPA_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • ZNF274 mutation correlated to 'RPPA_CNMF'.

  • PRKRIR mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • SYNJ1 mutation correlated to 'MRNA_CNMF' and 'CN_CNMF'.

  • TEX14 mutation correlated to 'MRNA_CHIERARCHICAL',  'CN_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • F9 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL', and 'CN_CNMF'.

  • SMEK1 mutation correlated to 'MRNASEQ_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • TSC1 mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.

  • LRIG1 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • SEC14L1 mutation correlated to 'MRNASEQ_CHIERARCHICAL' and 'MIRSEQ_CHIERARCHICAL'.

  • ZNF142 mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • SLC22A4 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • KLHDC9 mutation correlated to 'CN_CNMF',  'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • ANKRD12 mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • CTNND1 mutation correlated to 'CN_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • RBM16 mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • RASA1 mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'METHLYATION_CNMF', and 'MIRSEQ_MATURE_CNMF'.

Results
Overview of the results

Table 1.  Get Full Table Overview of the association between mutation status of 2222 genes and 12 molecular subtypes. Shown in the table are P values (Q values). Thresholded by P value < 0.05 and Q value < 0.25, 5558 significant findings detected.

Clinical
Features 		MRNA
CNMF 		MRNA
CHIERARCHICAL 		CN
CNMF 		METHLYATION
CNMF 		RPPA
CNMF 		RPPA
CHIERARCHICAL 		MRNASEQ
CNMF 		MRNASEQ
CHIERARCHICAL 		MIRSEQ
CNMF 		MIRSEQ
CHIERARCHICAL 		MIRSEQ
MATURE
CNMF 		MIRSEQ
MATURE
CHIERARCHICAL
nMutated (%) nWild-Type Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test
LARP4B 31 (6%) 458 0.00139
(0.0305) 		0.00144
(0.031) 		1e-05
(0.00111) 		0.0295
(0.176) 		0.0174
(0.132) 		0.252
(0.577) 		0.00437
(0.0605) 		0.00011
(0.00558) 		0.0126
(0.111) 		0.00326
(0.0514) 		0.00492
(0.0634) 		0.45
(0.776)
MACF1 66 (13%) 423 3e-05
(0.0022) 		4e-05
(0.00269) 		1e-05
(0.00111) 		0.0167
(0.128) 		0.0291
(0.174) 		0.468
(0.795) 		0.00079
(0.0209) 		1e-05
(0.00111) 		0.0287
(0.172) 		0.00017
(0.00754) 		0.0273
(0.167) 		0.828
(1.00)
FAM179A 29 (6%) 460 0.00632
(0.073) 		0.00645
(0.0737) 		0.00019
(0.00802) 		0.0285
(0.172) 		0.0268
(0.166) 		0.114
(0.374) 		0.00513
(0.0645) 		1e-05
(0.00111) 		0.104
(0.356) 		0.00665
(0.0747) 		0.00268
(0.0455) 		0.0349
(0.193)
APC 403 (82%) 86 0.0177
(0.133) 		0.00403
(0.0579) 		0.0254
(0.161) 		0.0329
(0.185) 		0.183
(0.484) 		0.565
(0.873) 		0.00015
(0.00691) 		1e-05
(0.00111) 		1e-05
(0.00111) 		0.00015
(0.00691) 		0.0371
(0.201) 		0.268
(0.594)
RNF43 47 (10%) 442 0.00032
(0.0114) 		0.0246
(0.159) 		1e-05
(0.00111) 		0.00019
(0.00802) 		0.134
(0.409) 		0.45
(0.776) 		1e-05
(0.00111) 		1e-05
(0.00111) 		8e-05
(0.00452) 		1e-05
(0.00111) 		0.00012
(0.00589) 		0.1
(0.348)
FBXW7 131 (27%) 358 0.047
(0.231) 		0.00707
(0.0774) 		0.00011
(0.00558) 		0.459
(0.785) 		0.00201
(0.0376) 		0.575
(0.881) 		0.00469
(0.0619) 		1e-05
(0.00111) 		0.00655
(0.0742) 		0.00271
(0.0458) 		0.298
(0.627) 		0.0442
(0.223)
BMPR2 36 (7%) 453 0.0002
(0.00826) 		3e-05
(0.0022) 		1e-05
(0.00111) 		0.0114
(0.104) 		0.224
(0.54) 		0.886
(1.00) 		0.00199
(0.0373) 		1e-05
(0.00111) 		0.0159
(0.125) 		7e-05
(0.00408) 		0.00119
(0.0276) 		0.293
(0.621)
GPATCH8 15 (3%) 474 0.0171
(0.13) 		0.0134
(0.114) 		0.00032
(0.0114) 		0.0358
(0.196) 		0.00501
(0.0638) 		0.594
(0.898) 		0.00426
(0.0595) 		0.0002
(0.00826) 		0.25
(0.576) 		0.0147
(0.12) 		0.0045
(0.0611) 		0.282
(0.61)
ATM 156 (32%) 333 0.00111
(0.0263) 		0.0521
(0.246) 		0.00422
(0.0592) 		0.0405
(0.212) 		0.00541
(0.0664) 		0.422
(0.75) 		1e-05
(0.00111) 		1e-05
(0.00111) 		1e-05
(0.00111) 		1e-05
(0.00111) 		0.0168
(0.128) 		0.223
(0.538)
DST 77 (16%) 412 0.001
(0.0245) 		0.0145
(0.119) 		0.00055
(0.0165) 		0.0662
(0.277) 		0.0337
(0.188) 		0.025
(0.16) 		0.00018
(0.00778) 		1e-05
(0.00111) 		0.00228
(0.0409) 		0.014
(0.117) 		0.169
(0.465) 		0.895
(1.00)
MLL2 59 (12%) 430 0.00514
(0.0646) 		0.00454
(0.0613) 		7e-05
(0.00408) 		0.0743
(0.293) 		0.00087
(0.0223) 		0.125
(0.393) 		0.00095
(0.0235) 		1e-05
(0.00111) 		0.00651
(0.074) 		0.00224
(0.0404) 		0.00031
(0.0112) 		0.31
(0.638)
BRAF 109 (22%) 380 1e-05
(0.00111) 		1e-05
(0.00111) 		1e-05
(0.00111) 		0.00044
(0.0142) 		0.0619
(0.27) 		0.256
(0.578) 		1e-05
(0.00111) 		1e-05
(0.00111) 		1e-05
(0.00111) 		1e-05
(0.00111) 		0.00377
(0.0558) 		0.176
(0.475)
EP300 46 (9%) 443 0.00063
(0.0181) 		0.00546
(0.0668) 		0.00018
(0.00778) 		0.00583
(0.0692) 		0.19
(0.491) 		0.407
(0.733) 		0.00081
(0.0212) 		0.00025
(0.00959) 		0.244
(0.569) 		0.00143
(0.0309) 		0.014
(0.116) 		0.0447
(0.225)
CIC 23 (5%) 466 0.0177
(0.133) 		0.0127
(0.111) 		0.00019
(0.00802) 		0.13
(0.401) 		0.00452
(0.0612) 		0.191
(0.493) 		0.00645
(0.0737) 		1e-05
(0.00111) 		0.0125
(0.11) 		0.00807
(0.0838) 		0.0161
(0.126) 		0.562
(0.873)
MDN1 57 (12%) 432 4e-05
(0.00269) 		3e-05
(0.0022) 		1e-05
(0.00111) 		0.118
(0.383) 		0.0253
(0.161) 		0.953
(1.00) 		0.0199
(0.142) 		5e-05
(0.00318) 		0.0152
(0.123) 		0.00011
(0.00558) 		0.00185
(0.0358) 		0.248
(0.574)
NEB 66 (13%) 423 9e-05
(0.00485) 		0.00517
(0.0648) 		9e-05
(0.00485) 		0.0666
(0.277) 		0.0519
(0.246) 		0.194
(0.497) 		0.00865
(0.0867) 		1e-05
(0.00111) 		0.0142
(0.118) 		0.00076
(0.0204) 		0.0114
(0.104) 		0.0341
(0.189)
SPEN 34 (7%) 455 0.00779
(0.0825) 		0.00044
(0.0142) 		0.00015
(0.00691) 		0.00202
(0.0376) 		0.0478
(0.233) 		0.788
(1.00) 		0.0819
(0.31) 		0.0001
(0.00522) 		0.0187
(0.136) 		0.00879
(0.0873) 		0.0247
(0.159) 		0.757
(1.00)
ZBTB20 22 (4%) 467 0.00153
(0.0321) 		0.00477
(0.0623) 		9e-05
(0.00485) 		0.00273
(0.046) 		0.00879
(0.0873) 		0.0815
(0.309) 		0.0255
(0.162) 		1e-05
(0.00111) 		0.0911
(0.329) 		0.00011
(0.00558) 		0.0879
(0.321) 		0.522
(0.843)
PTCH1 103 (21%) 386 0.00029
(0.0107) 		0.00476
(0.0623) 		0.0396
(0.209) 		0.285
(0.614) 		0.0414
(0.214) 		0.649
(0.936) 		1e-05
(0.00111) 		1e-05
(0.00111) 		1e-05
(0.00111) 		1e-05
(0.00111) 		0.211
(0.52) 		0.111
(0.369)
SMAD4 144 (29%) 345 0.0155
(0.124) 		0.0487
(0.236) 		0.688
(0.966) 		0.233
(0.553) 		0.27
(0.595) 		0.00516
(0.0647) 		1e-05
(0.00111) 		1e-05
(0.00111) 		1e-05
(0.00111) 		2e-05
(0.0017) 		0.0607
(0.268) 		0.0455
(0.227)
SETD2 46 (9%) 443 0.0105
(0.0981) 		0.024
(0.157) 		4e-05
(0.00269) 		0.0004
(0.0132) 		0.856
(1.00) 		0.5
(0.827) 		0.00112
(0.0265) 		2e-05
(0.0017) 		1e-05
(0.00111) 		0.00048
(0.0151) 		0.833
(1.00) 		0.79
(1.00)
CREBBP 70 (14%) 419 2e-05
(0.0017) 		0.00021
(0.00856) 		0.00012
(0.00589) 		0.00019
(0.00802) 		0.315
(0.644) 		0.981
(1.00) 		0.015
(0.122) 		1e-05
(0.00111) 		0.00044
(0.0142) 		8e-05
(0.00452) 		0.274
(0.6) 		0.117
(0.38)
NCAPD2 21 (4%) 468 0.0053
(0.0657) 		0.88
(1.00) 		1e-05
(0.00111) 		0.0093
(0.0906) 		0.00859
(0.0864) 		0.0234
(0.156) 		0.00589
(0.0696) 		2e-05
(0.0017) 		0.68
(0.961) 		0.00684
(0.076) 		0.071
(0.288) 		0.576
(0.883)
ZFYVE26 32 (7%) 457 0.00254
(0.0439) 		0.0037
(0.0553) 		0.00038
(0.0128) 		0.0189
(0.137) 		0.376
(0.705) 		0.453
(0.78) 		0.0194
(0.139) 		1e-05
(0.00111) 		0.165
(0.459) 		0.00883
(0.0875) 		0.0203
(0.144) 		0.114
(0.374)
ARHGEF10 24 (5%) 465 0.0015
(0.0317) 		0.0001
(0.00522) 		0.00043
(0.014) 		0.0682
(0.281) 		0.0318
(0.183) 		0.795
(1.00) 		0.0305
(0.179) 		0.0006
(0.0175) 		0.147
(0.428) 		0.00994
(0.0951) 		0.0243
(0.158) 		0.268
(0.593)
EZH2 46 (9%) 443 0.0266
(0.165) 		0.0186
(0.136) 		0.015
(0.122) 		0.499
(0.825) 		0.0374
(0.202) 		0.245
(0.57) 		0.00011
(0.00558) 		1e-05
(0.00111) 		0.00031
(0.0112) 		3e-05
(0.0022) 		0.208
(0.515) 		0.0654
(0.276)
EPHA7 42 (9%) 447 0.0239
(0.157) 		0.0267
(0.165) 		0.00431
(0.06) 		0.00206
(0.0381) 		0.0255
(0.162) 		0.887
(1.00) 		0.00416
(0.0588) 		0.00021
(0.00856) 		0.187
(0.487) 		0.00576
(0.0688) 		0.0563
(0.258) 		0.65
(0.937)
PIK3CA 211 (43%) 278 0.0108
(0.1) 		0.0597
(0.267) 		0.0293
(0.175) 		0.278
(0.605) 		0.0245
(0.158) 		0.00815
(0.0842) 		1e-05
(0.00111) 		1e-05
(0.00111) 		1e-05
(0.00111) 		1e-05
(0.00111) 		0.906
(1.00) 		0.93
(1.00)
PLEKHA6 20 (4%) 469 0.0115
(0.104) 		0.00078
(0.0207) 		1e-05
(0.00111) 		0.0112
(0.103) 		0.249
(0.575) 		0.555
(0.87) 		0.00442
(0.0609) 		1e-05
(0.00111) 		0.107
(0.361) 		3e-05
(0.0022) 		0.0249
(0.16) 		0.129
(0.399)
MAP7D1 15 (3%) 474 0.00645
(0.0737) 		0.0181
(0.134) 		0.0238
(0.157) 		0.013
(0.112) 		0.00026
(0.00988) 		1e-05
(0.00111) 		0.00455
(0.0614) 		0.00134
(0.0297) 		0.12
(0.386) 		0.789
(1.00)
FRY 41 (8%) 448 0.00053
(0.0162) 		0.00476
(0.0623) 		1e-05
(0.00111) 		0.00023
(0.00909) 		0.733
(0.999) 		0.803
(1.00) 		0.0014
(0.0305) 		1e-05
(0.00111) 		0.0655
(0.276) 		0.00597
(0.0702) 		0.00902
(0.0888) 		0.432
(0.76)
PTPRC 29 (6%) 460 0.0178
(0.133) 		0.057
(0.26) 		0.00077
(0.0205) 		0.0307
(0.18) 		0.0486
(0.235) 		0.493
(0.819) 		0.0485
(0.235) 		0.00049
(0.0153) 		0.0743
(0.293) 		0.0238
(0.157) 		0.0194
(0.139) 		0.401
(0.726)
KIF21B 25 (5%) 464 0.0037
(0.0553) 		0.0187
(0.136) 		6e-05
(0.00366) 		0.0993
(0.346) 		0.0793
(0.303) 		0.00873
(0.087) 		0.0193
(0.139) 		2e-05
(0.0017) 		0.00709
(0.0776) 		0.0103
(0.0973) 		0.648
(0.935) 		0.34
(0.667)
IGF2R 41 (8%) 448 0.00035
(0.0122) 		0.00431
(0.06) 		1e-05
(0.00111) 		0.00406
(0.058) 		0.0474
(0.233) 		0.941
(1.00) 		0.0119
(0.107) 		1e-05
(0.00111) 		0.224
(0.539) 		1e-05
(0.00111) 		0.0691
(0.283) 		0.641
(0.928)
FLNB 31 (6%) 458 0.00036
(0.0124) 		0.00101
(0.0246) 		1e-05
(0.00111) 		0.00019
(0.00802) 		0.937
(1.00) 		0.814
(1.00) 		0.00204
(0.0379) 		9e-05
(0.00485) 		0.776
(1.00) 		0.00193
(0.0367) 		0.0143
(0.118) 		0.281
(0.609)
BRD8 18 (4%) 471 0.00086
(0.0222) 		0.0149
(0.122) 		0.00039
(0.013) 		0.0344
(0.191) 		0.608
(0.909) 		0.822
(1.00) 		0.0489
(0.236) 		0.0001
(0.00522) 		0.0762
(0.297) 		0.00225
(0.0405) 		0.0243
(0.158) 		0.687
(0.965)
ANK3 54 (11%) 435 0.00023
(0.00909) 		0.00492
(0.0634) 		1e-05
(0.00111) 		0.0801
(0.305) 		0.236
(0.558) 		0.538
(0.858) 		0.0554
(0.256) 		1e-05
(0.00111) 		0.0246
(0.159) 		2e-05
(0.0017) 		0.00012
(0.00589) 		0.0255
(0.162)
GTF3C1 30 (6%) 459 0.0069
(0.0763) 		0.0243
(0.158) 		4e-05
(0.00269) 		0.0002
(0.00826) 		0.161
(0.454) 		0.964
(1.00) 		0.00043
(0.014) 		3e-05
(0.0022) 		0.138
(0.414) 		0.028
(0.17) 		0.00872
(0.0869) 		0.222
(0.537)
FAM193A 17 (3%) 472 0.00035
(0.0122) 		0.0205
(0.144) 		0.0253
(0.161) 		0.56
(0.871) 		0.00014
(0.0066) 		1e-05
(0.00111) 		0.0294
(0.175) 		0.00466
(0.0619) 		0.0239
(0.157) 		0.869
(1.00)
GLB1L2 14 (3%) 475 0.00605
(0.0708) 		0.019
(0.138) 		0.00357
(0.0544) 		0.0322
(0.183) 		0.932
(1.00) 		0.926
(1.00) 		0.0111
(0.102) 		2e-05
(0.0017) 		0.48
(0.808) 		0.00075
(0.0202) 		8e-05
(0.00452) 		0.378
(0.707)
LRRN1 19 (4%) 470 0.0052
(0.065) 		0.0148
(0.121) 		1e-05
(0.00111) 		0.0107
(0.0993) 		0.282
(0.61) 		0.275
(0.601) 		0.036
(0.197) 		2e-05
(0.0017) 		0.222
(0.536) 		5e-05
(0.00318) 		0.00014
(0.0066) 		0.339
(0.666)
TRPM2 26 (5%) 463 0.00945
(0.0917) 		0.017
(0.129) 		1e-05
(0.00111) 		0.00936
(0.0911) 		0.464
(0.791) 		0.25
(0.576) 		0.00342
(0.053) 		3e-05
(0.0022) 		0.498
(0.825) 		0.00049
(0.0153) 		0.00368
(0.0551) 		0.574
(0.881)
KNTC1 25 (5%) 464 0.00393
(0.057) 		0.549
(0.866) 		0.00019
(0.00802) 		0.0298
(0.177) 		0.134
(0.41) 		0.0584
(0.264) 		0.00126
(0.0287) 		2e-05
(0.0017) 		0.0141
(0.117) 		0.0477
(0.233) 		0.0191
(0.138) 		0.211
(0.519)
TP53 323 (66%) 166 0.00257
(0.0443) 		5e-05
(0.00318) 		1e-05
(0.00111) 		0.302
(0.631) 		0.113
(0.373) 		0.246
(0.57) 		0.00289
(0.048) 		1e-05
(0.00111) 		1e-05
(0.00111) 		3e-05
(0.0022) 		0.365
(0.694) 		0.281
(0.609)
PRKDC 70 (14%) 419 0.0212
(0.147) 		0.0259
(0.163) 		0.00292
(0.0483) 		0.538
(0.858) 		0.209
(0.516) 		0.519
(0.84) 		0.00048
(0.0151) 		1e-05
(0.00111) 		0.00047
(0.0149) 		0.00454
(0.0613) 		0.243
(0.568) 		0.271
(0.597)
NF1 107 (22%) 382 0.00321
(0.0509) 		0.322
(0.65) 		0.416
(0.744) 		0.215
(0.525) 		0.00577
(0.0688) 		0.0249
(0.16) 		1e-05
(0.00111) 		1e-05
(0.00111) 		1e-05
(0.00111) 		1e-05
(0.00111) 		0.931
(1.00) 		0.0712
(0.288)
ROS1 54 (11%) 435 0.00533
(0.0659) 		0.0256
(0.162) 		0.00188
(0.036) 		0.148
(0.43) 		0.0145
(0.119) 		0.22
(0.534) 		0.094
(0.336) 		1e-05
(0.00111) 		0.00392
(0.0569) 		0.043
(0.219) 		0.383
(0.712) 		0.641
(0.928)
DDX26B 16 (3%) 473 1e-05
(0.00111) 		0.0127
(0.111) 		0.0189
(0.137) 		0.244
(0.569) 		0.00018
(0.00778) 		4e-05
(0.00269) 		0.0184
(0.135) 		0.0508
(0.242) 		0.0253
(0.161) 		0.433
(0.76)
PTEN 186 (38%) 303 0.0107
(0.0992) 		0.0925
(0.332) 		0.134
(0.409) 		0.264
(0.589) 		0.00431
(0.06) 		0.00215
(0.0393) 		1e-05
(0.00111) 		1e-05
(0.00111) 		1e-05
(0.00111) 		1e-05
(0.00111) 		0.603
(0.905) 		0.575
(0.882)
CHD3 25 (5%) 464 0.00024
(0.00936) 		0.00025
(0.00959) 		1e-05
(0.00111) 		0.0714
(0.288) 		0.132
(0.406) 		0.287
(0.615) 		0.0354
(0.195) 		1e-05
(0.00111) 		0.0855
(0.316) 		1e-05
(0.00111) 		0.0241
(0.157) 		0.67
(0.954)
PTK2 21 (4%) 468 0.0167
(0.128) 		0.0622
(0.271) 		0.0189
(0.138) 		0.042
(0.216) 		0.0294
(0.175) 		0.0466
(0.23) 		0.0185
(0.136) 		0.00052
(0.0161) 		0.382
(0.711) 		0.579
(0.885) 		0.391
(0.716) 		0.426
(0.753)
C15ORF52 12 (2%) 477 0.0174
(0.132) 		0.0137
(0.115) 		0.00014
(0.0066) 		0.0327
(0.185) 		0.91
(1.00) 		0.668
(0.953) 		0.0208
(0.145) 		0.00014
(0.0066) 		0.501
(0.828) 		0.00463
(0.0618) 		0.0964
(0.34) 		0.672
(0.955)
SVIL 34 (7%) 455 0.0605
(0.268) 		0.125
(0.393) 		1e-05
(0.00111) 		0.00421
(0.0591) 		0.0858
(0.317) 		0.497
(0.824) 		0.00446
(0.061) 		1e-05
(0.00111) 		0.00315
(0.0504) 		0.00035
(0.0122) 		1e-05
(0.00111) 		0.235
(0.556)
XYLT2 14 (3%) 475 0.00025
(0.00959) 		0.0173
(0.131) 		0.297
(0.626) 		0.203
(0.509) 		5e-05
(0.00318) 		1e-05
(0.00111) 		0.0262
(0.164) 		0.0494
(0.238) 		0.0242
(0.158) 		0.87
(1.00)
FHOD3 30 (6%) 459 0.00404
(0.0579) 		0.0173
(0.131) 		1e-05
(0.00111) 		0.13
(0.402) 		0.149
(0.432) 		0.252
(0.577) 		0.0348
(0.193) 		1e-05
(0.00111) 		0.269
(0.594) 		7e-05
(0.00408) 		0.00015
(0.00691) 		0.547
(0.865)
MLL3 66 (13%) 423 0.00139
(0.0305) 		0.0173
(0.131) 		0.028
(0.17) 		0.662
(0.948) 		0.132
(0.405) 		0.147
(0.429) 		0.00419
(0.059) 		1e-05
(0.00111) 		0.00064
(0.0182) 		0.00042
(0.0138) 		0.327
(0.656) 		0.531
(0.851)
USP34 47 (10%) 442 0.429
(0.757) 		0.236
(0.558) 		5e-05
(0.00318) 		0.089
(0.324) 		0.0342
(0.19) 		1
(1.00) 		0.00027
(0.0101) 		1e-05
(0.00111) 		0.0424
(0.218) 		0.00083
(0.0215) 		0.00054
(0.0164) 		0.754
(1.00)
CD58 15 (3%) 474 0.00014
(0.0066) 		0.00469
(0.0619) 		0.877
(1.00) 		0.202
(0.508) 		0.00067
(0.0187) 		1e-05
(0.00111) 		0.0086
(0.0865) 		0.04
(0.21) 		0.00012
(0.00589) 		0.548
(0.866)
PKD2L1 24 (5%) 465 0.699
(0.971) 		0.658
(0.945) 		0.0014
(0.0305) 		0.0119
(0.107) 		0.69
(0.967) 		0.774
(1.00) 		0.0283
(0.171) 		0.00045
(0.0144) 		0.0127
(0.111) 		7e-05
(0.00408) 		0.0256
(0.162) 		0.683
(0.963)
GPR98 69 (14%) 420 8e-05
(0.00452) 		0.00024
(0.00936) 		1e-05
(0.00111) 		0.189
(0.49) 		0.0243
(0.158) 		0.752
(1.00) 		0.0244
(0.158) 		1e-05
(0.00111) 		0.0949
(0.338) 		0.00172
(0.0343) 		0.182
(0.482) 		0.142
(0.42)
BAZ1B 27 (6%) 462 0.00729
(0.0789) 		0.0719
(0.289) 		0.0101
(0.0962) 		0.779
(1.00) 		0.00388
(0.0566) 		0.644
(0.931) 		0.00521
(0.065) 		0.00105
(0.0253) 		0.0692
(0.284) 		0.0005
(0.0156) 		0.00247
(0.0432) 		0.394
(0.719)
ZCCHC6 20 (4%) 469 0.534
(0.854) 		0.595
(0.898) 		0.00218
(0.0397) 		0.00222
(0.0401) 		0.633
(0.927) 		0.13
(0.401) 		0.00648
(0.0739) 		0.0101
(0.0962) 		0.0301
(0.177) 		0.0135
(0.115) 		0.00374
(0.0556) 		0.192
(0.494)
CAMSAP1L1 23 (5%) 466 0.00364
(0.0549) 		0.00308
(0.0497) 		0.00176
(0.0347) 		0.0124
(0.11) 		0.408
(0.734) 		0.422
(0.75) 		0.0159
(0.125) 		0.00028
(0.0104) 		0.0073
(0.0789) 		0.621
(0.919) 		0.23
(0.55) 		0.892
(1.00)
SYNE1 142 (29%) 347 9e-05
(0.00485) 		3e-05
(0.0022) 		1e-05
(0.00111) 		0.0665
(0.277) 		0.753
(1.00) 		0.846
(1.00) 		0.0227
(0.153) 		1e-05
(0.00111) 		0.0352
(0.194) 		3e-05
(0.0022) 		0.242
(0.566) 		0.453
(0.78)
TRRAP 57 (12%) 432 0.00303
(0.0493) 		0.0727
(0.291) 		0.0357
(0.196) 		0.0225
(0.152) 		0.279
(0.606) 		0.632
(0.927) 		0.00451
(0.0612) 		0.0002
(0.00826) 		0.276
(0.602) 		0.0123
(0.11) 		0.0421
(0.216) 		0.165
(0.459)
CENPF 46 (9%) 443 1e-05
(0.00111) 		2e-05
(0.0017) 		0.00491
(0.0634) 		0.677
(0.958) 		0.0123
(0.109) 		0.00919
(0.09) 		0.229
(0.549) 		8e-05
(0.00452) 		0.136
(0.411) 		0.00055
(0.0165) 		0.283
(0.611) 		0.337
(0.665)
INSRR 32 (7%) 457 0.0621
(0.271) 		0.00524
(0.0652) 		0.00903
(0.0889) 		0.238
(0.561) 		0.0247
(0.159) 		0.00968
(0.0934) 		0.229
(0.549) 		5e-05
(0.00318) 		0.178
(0.477) 		0.0247
(0.159) 		0.00288
(0.0479) 		0.894
(1.00)
LRP2 87 (18%) 402 0.00549
(0.0669) 		0.00088
(0.0225) 		0.00035
(0.0122) 		0.0608
(0.268) 		0.0152
(0.123) 		0.878
(1.00) 		0.482
(0.81) 		0.0025
(0.0435) 		0.00522
(0.0651) 		0.013
(0.112) 		0.184
(0.484) 		0.508
(0.832)
HMCN1 82 (17%) 407 2e-05
(0.0017) 		0.00016
(0.00722) 		1e-05
(0.00111) 		0.627
(0.925) 		0.00351
(0.0539) 		0.351
(0.678) 		0.019
(0.138) 		4e-05
(0.00269) 		0.0687
(0.282) 		0.0387
(0.207) 		0.578
(0.884) 		0.278
(0.606)
CSMD3 108 (22%) 381 0.00966
(0.0933) 		0.00063
(0.0181) 		0.00495
(0.0636) 		0.332
(0.659) 		0.012
(0.108) 		0.831
(1.00) 		0.014
(0.117) 		1e-05
(0.00111) 		0.112
(0.371) 		0.00234
(0.0416) 		0.689
(0.966) 		0.892
(1.00)
USH2A 88 (18%) 401 0.00181
(0.0353) 		0.0132
(0.113) 		0.00339
(0.0526) 		0.0629
(0.272) 		0.146
(0.426) 		0.737
(1.00) 		0.00806
(0.0838) 		0.00016
(0.00722) 		0.0344
(0.191) 		0.0246
(0.159) 		0.904
(1.00) 		0.353
(0.681)
UBR4 47 (10%) 442 0.0296
(0.176) 		0.0776
(0.3) 		1e-05
(0.00111) 		0.191
(0.493) 		0.0211
(0.147) 		0.837
(1.00) 		0.0509
(0.242) 		1e-05
(0.00111) 		0.0191
(0.138) 		0.00069
(0.0192) 		0.0206
(0.145) 		0.596
(0.899)
MLL4 39 (8%) 450 0.161
(0.453) 		0.275
(0.601) 		1e-05
(0.00111) 		0.00031
(0.0112) 		0.141
(0.417) 		0.719
(0.988) 		0.00063
(0.0181) 		1e-05
(0.00111) 		0.00101
(0.0246) 		1e-05
(0.00111) 		0.00187
(0.0359) 		0.895
(1.00)
TNFAIP3 37 (8%) 452 0.612
(0.912) 		0.233
(0.553) 		0.0428
(0.219) 		0.00153
(0.0321) 		0.119
(0.384) 		0.85
(1.00) 		5e-05
(0.00318) 		2e-05
(0.0017) 		1e-05
(0.00111) 		0.0203
(0.144) 		0.00058
(0.0171) 		0.169
(0.465)
HYDIN 93 (19%) 396 0.00235
(0.0416) 		0.00367
(0.055) 		1e-05
(0.00111) 		0.00152
(0.032) 		0.483
(0.81) 		1
(1.00) 		0.0751
(0.294) 		1e-05
(0.00111) 		0.0541
(0.252) 		0.00867
(0.0867) 		0.0208
(0.145) 		0.423
(0.751)
KIAA0564 25 (5%) 464 0.00115
(0.0269) 		0.308
(0.637) 		0.00012
(0.00589) 		0.122
(0.388) 		0.0322
(0.183) 		0.107
(0.362) 		0.00653
(0.0741) 		0.00117
(0.0273) 		0.832
(1.00) 		0.00579
(0.0689) 		0.00094
(0.0235) 		0.381
(0.71)
EIF5B 16 (3%) 473 0.0008
(0.021) 		0.00521
(0.065) 		0.344
(0.671) 		0.934
(1.00) 		0.00329
(0.0515) 		2e-05
(0.0017) 		0.0499
(0.24) 		0.0329
(0.185) 		0.0009
(0.0228) 		0.672
(0.955)
RGS22 27 (6%) 462 0.0151
(0.122) 		1
(1.00) 		0.00147
(0.0313) 		0.00047
(0.0149) 		0.192
(0.495) 		0.92
(1.00) 		0.00023
(0.00909) 		1e-05
(0.00111) 		0.00048
(0.0151) 		0.312
(0.639) 		9e-05
(0.00485) 		0.378
(0.707)
OR4M2 16 (3%) 473 0.00363
(0.0549) 		0.638
(0.927) 		2e-05
(0.0017) 		0.0464
(0.23) 		0.738
(1.00) 		0.822
(1.00) 		0.0217
(0.149) 		2e-05
(0.0017) 		0.383
(0.712) 		0.00236
(0.0418) 		0.00395
(0.0571) 		0.448
(0.775)
NOS3 20 (4%) 469 0.0257
(0.162) 		0.0349
(0.193) 		0.648
(0.935) 		0.1
(0.348) 		0.00173
(0.0344) 		2e-05
(0.0017) 		0.00233
(0.0415) 		0.0253
(0.161) 		0.0259
(0.163) 		0.381
(0.71)
USP9X 33 (7%) 456 0.00319
(0.0507) 		0.0478
(0.233) 		0.00016
(0.00722) 		0.232
(0.552) 		0.605
(0.906) 		0.965
(1.00) 		0.237
(0.559) 		0.00024
(0.00936) 		0.00222
(0.0401) 		0.0312
(0.181) 		0.00329
(0.0515) 		0.757
(1.00)
DNAH17 32 (7%) 457 0.00064
(0.0182) 		0.173
(0.47) 		0.00874
(0.087) 		0.0466
(0.23) 		0.00053
(0.0162) 		2e-05
(0.0017) 		0.00298
(0.0489) 		0.133
(0.407) 		0.00555
(0.0675) 		0.923
(1.00)
DNAH6 24 (5%) 465 0.0636
(0.274) 		0.347
(0.675) 		2e-05
(0.0017) 		0.00073
(0.0199) 		0.0308
(0.18) 		0.56
(0.871) 		0.0103
(0.0971) 		1e-05
(0.00111) 		0.069
(0.283) 		0.0018
(0.0352) 		0.0304
(0.179) 		0.952
(1.00)
MYH11 35 (7%) 454 1e-05
(0.00111) 		1e-05
(0.00111) 		0.00014
(0.0066) 		0.279
(0.607) 		0.156
(0.444) 		0.831
(1.00) 		0.00393
(0.057) 		0.00047
(0.0149) 		0.117
(0.38) 		0.00041
(0.0135) 		0.00689
(0.0763) 		0.339
(0.666)
MYH3 37 (8%) 452 0.00163
(0.0335) 		0.00358
(0.0545) 		0.00237
(0.0418) 		0.103
(0.355) 		0.00586
(0.0694) 		0.527
(0.848) 		0.0303
(0.178) 		0.0006
(0.0175) 		0.0206
(0.145) 		0.078
(0.301) 		0.279
(0.606) 		0.735
(1.00)
ANKRD50 21 (4%) 468 0.00246
(0.0431) 		0.0493
(0.237) 		0.00068
(0.019) 		0.0189
(0.137) 		0.733
(0.999) 		0.295
(0.624) 		0.0187
(0.136) 		0.00026
(0.00988) 		0.825
(1.00) 		0.00089
(0.0226) 		0.0845
(0.314) 		1
(1.00)
PKHD1L1 46 (9%) 443 4e-05
(0.00269) 		0.00152
(0.032) 		9e-05
(0.00485) 		0.118
(0.383) 		0.0494
(0.238) 		0.299
(0.628) 		0.0607
(0.268) 		3e-05
(0.0022) 		0.278
(0.606) 		0.00837
(0.0852) 		0.00491
(0.0634) 		0.459
(0.786)
ADAMTSL3 46 (9%) 443 0.00279
(0.0467) 		0.016
(0.125) 		0.0083
(0.0848) 		0.0166
(0.128) 		0.486
(0.813) 		0.155
(0.442) 		0.064
(0.275) 		3e-05
(0.0022) 		0.048
(0.234) 		0.00491
(0.0634) 		0.151
(0.436) 		0.257
(0.579)
DMXL2 37 (8%) 452 1e-05
(0.00111) 		0.00312
(0.05) 		1e-05
(0.00111) 		0.09
(0.326) 		0.279
(0.606) 		0.482
(0.81) 		0.0422
(0.217) 		0.0002
(0.00826) 		0.05
(0.24) 		0.0323
(0.184) 		0.0651
(0.276) 		0.206
(0.512)
CEP164 25 (5%) 464 0.00108
(0.0258) 		0.00381
(0.056) 		0.00125
(0.0287) 		0.00586
(0.0694) 		0.163
(0.456) 		0.159
(0.45) 		0.0301
(0.177) 		0.00044
(0.0142) 		0.473
(0.801) 		0.00037
(0.0126) 		0.665
(0.951) 		0.19
(0.492)
CHD1 25 (5%) 464 0.00771
(0.082) 		0.0004
(0.0132) 		0.00271
(0.0458) 		0.0101
(0.0958) 		0.03
(0.177) 		0.705
(0.976) 		0.62
(0.918) 		0.0696
(0.284) 		0.461
(0.788) 		0.00172
(0.0343) 		0.0162
(0.126) 		0.459
(0.786)
MEGF8 27 (6%) 462 0.00531
(0.0658) 		0.0156
(0.124) 		1e-05
(0.00111) 		8e-05
(0.00452) 		0.091
(0.329) 		0.447
(0.773) 		0.00027
(0.0101) 		1e-05
(0.00111) 		0.184
(0.485) 		1e-05
(0.00111) 		0.0724
(0.29) 		0.192
(0.494)
GON4L 23 (5%) 466 0.00497
(0.0637) 		0.125
(0.393) 		0.00011
(0.00558) 		0.0226
(0.152) 		0.324
(0.653) 		1
(1.00) 		0.00724
(0.0786) 		0.0139
(0.116) 		0.523
(0.844) 		0.403
(0.728) 		0.00154
(0.0323) 		0.024
(0.157)
DNMT1 24 (5%) 465 0.0484
(0.235) 		0.0394
(0.209) 		0.0108
(0.1) 		0.0684
(0.282) 		0.831
(1.00) 		0.55
(0.867) 		0.00253
(0.0438) 		0.0086
(0.0865) 		0.0321
(0.183) 		0.00325
(0.0513)
SPARCL1 15 (3%) 474 0.0726
(0.29) 		0.0397
(0.209) 		2e-05
(0.0017) 		0.0383
(0.205) 		0.652
(0.938) 		0.743
(1.00) 		0.0317
(0.182) 		0.00276
(0.0464) 		0.39
(0.716) 		0.0148
(0.121) 		0.00366
(0.0549) 		0.188
(0.489)
DLGAP3 17 (3%) 472 0.023
(0.154) 		0.737
(1.00) 		7e-05
(0.00408) 		0.0377
(0.203) 		0.0983
(0.344) 		0.202
(0.508) 		0.0188
(0.137) 		8e-05
(0.00452) 		0.111
(0.369) 		0.0287
(0.173) 		0.00457
(0.0614) 		0.448
(0.775)
HK3 22 (4%) 467 0.0646
(0.275) 		0.184
(0.485) 		0.031
(0.181) 		0.0473
(0.232) 		0.594
(0.898) 		0.884
(1.00) 		0.0322
(0.183) 		0.00084
(0.0218) 		0.0469
(0.231) 		0.00029
(0.0107) 		0.0206
(0.145) 		0.38
(0.71)
BIRC6 39 (8%) 450 6e-05
(0.00366) 		0.00502
(0.0638) 		1e-05
(0.00111) 		0.0316
(0.182) 		0.005
(0.0638) 		0.18
(0.48) 		0.0579
(0.262) 		3e-05
(0.0022) 		0.396
(0.721) 		0.00806
(0.0838) 		0.198
(0.501) 		0.442
(0.769)
CACNA1D 23 (5%) 466 0.0156
(0.124) 		0.831
(1.00) 		1e-05
(0.00111) 		0.00564
(0.0679) 		0.271
(0.596) 		0.514
(0.836) 		0.00062
(0.018) 		1e-05
(0.00111) 		0.0973
(0.342) 		4e-05
(0.00269) 		4e-05
(0.00269) 		0.186
(0.487)
C5ORF36 20 (4%) 469 0.255
(0.578) 		0.638
(0.927) 		0.00032
(0.0114) 		0.0132
(0.113) 		0.0358
(0.196) 		0.53
(0.85) 		0.00057
(0.0169) 		1e-05
(0.00111) 		0.087
(0.319) 		0.0166
(0.128) 		0.00013
(0.00626) 		0.684
(0.963)
DOPEY2 16 (3%) 473 0.00162
(0.0334) 		0.0397
(0.209) 		0.00015
(0.00691) 		0.0379
(0.204) 		1
(1.00) 		0.709
(0.98) 		0.0476
(0.233) 		0.0156
(0.124) 		0.0721
(0.289) 		0.0266
(0.165) 		0.361
(0.69) 		1
(1.00)
ABL1 30 (6%) 459 0.00906
(0.0891) 		0.0318
(0.183) 		0.603
(0.905) 		0.892
(1.00) 		0.00145
(0.0311) 		1e-05
(0.00111) 		0.00101
(0.0246) 		0.00034
(0.012) 		0.00502
(0.0638) 		0.681
(0.962)
MUC2 25 (5%) 464 0.0179
(0.134) 		0.0133
(0.114) 		0.00306
(0.0495) 		0.0667
(0.278) 		0.959
(1.00) 		0.621
(0.919) 		0.0137
(0.115) 		7e-05
(0.00408) 		0.00556
(0.0675) 		0.587
(0.891) 		0.0163
(0.127) 		0.462
(0.788)
CSF3R 15 (3%) 474 0.0371
(0.201) 		0.0222
(0.151) 		0.00167
(0.0339) 		0.00956
(0.0926) 		0.428
(0.755) 		0.532
(0.851) 		0.0642
(0.275) 		1e-05
(0.00111) 		0.0557
(0.257) 		4e-05
(0.00269) 		0.0045
(0.0611) 		1
(1.00)
PCDHGA4 19 (4%) 470 0.0734
(0.291) 		0.00303
(0.0493) 		0.00317
(0.0505) 		0.45
(0.776) 		0.00974
(0.0938) 		0.0413
(0.214) 		0.139
(0.415) 		0.00126
(0.0287) 		0.506
(0.832) 		0.00388
(0.0566) 		0.0245
(0.159) 		1
(1.00)
KIAA2018 22 (4%) 467 0.0112
(0.103) 		0.376
(0.706) 		1e-05
(0.00111) 		0.0247
(0.159) 		0.212
(0.521) 		0.37
(0.699) 		0.00774
(0.0823) 		0.00037
(0.0126) 		0.11
(0.368) 		0.0051
(0.0643) 		0.0136
(0.115) 		0.22
(0.534)
CLSTN1 16 (3%) 473 0.00601
(0.0706) 		0.02
(0.142) 		0.0012
(0.0278) 		0.0425
(0.218) 		0.167
(0.461) 		0.824
(1.00) 		0.177
(0.477) 		8e-05
(0.00452) 		0.876
(1.00) 		0.0304
(0.179) 		0.00352
(0.054) 		1
(1.00)
ZNF142 15 (3%) 474 0.0126
(0.111) 		0.117
(0.38) 		0.00045
(0.0144) 		0.00461
(0.0617) 		0.454
(0.78) 		0.802
(1.00) 		0.179
(0.479) 		1e-05
(0.00111) 		0.0499
(0.24) 		0.00502
(0.0638) 		0.00463
(0.0618) 		1
(1.00)
ARID1A 83 (17%) 406 0.0209
(0.146) 		0.104
(0.357) 		0.00032
(0.0114) 		0.0717
(0.289) 		0.0933
(0.334) 		0.622
(0.92) 		0.00228
(0.0409) 		1e-05
(0.00111) 		0.00027
(0.0101) 		0.00018
(0.00778) 		0.0618
(0.27) 		0.568
(0.875)
CDH1 86 (18%) 403 0.0036
(0.0546) 		0.0456
(0.227) 		0.0553
(0.256) 		0.524
(0.845) 		0.117
(0.381) 		0.287
(0.616) 		1e-05
(0.00111) 		1e-05
(0.00111) 		1e-05
(0.00111) 		1e-05
(0.00111) 		0.538
(0.859) 		0.117
(0.38)
WNT1 7 (1%) 482 0.01
(0.0957) 		0.0655
(0.276) 		0.617
(0.916) 		0.684
(0.963) 		0.0109
(0.101) 		2e-05
(0.0017) 		0.0143
(0.118) 		0.0242
(0.158) 		0.00469
(0.0619) 		0.449
(0.775)
FMN2 63 (13%) 426 0.724
(0.992) 		0.898
(1.00) 		0.0239
(0.157) 		0.416
(0.743) 		0.00014
(0.0066) 		0.248
(0.574) 		1e-05
(0.00111) 		1e-05
(0.00111) 		2e-05
(0.0017) 		0.00082
(0.0214) 		0.127
(0.396) 		0.137
(0.413)
NF2 67 (14%) 422 0.438
(0.764) 		0.553
(0.87) 		0.0366
(0.199) 		0.185
(0.485) 		0.00045
(0.0144) 		0.225
(0.54) 		1e-05
(0.00111) 		1e-05
(0.00111) 		1e-05
(0.00111) 		3e-05
(0.0022) 		0.165
(0.459) 		0.257
(0.579)
MVK 14 (3%) 475 5e-05
(0.00318) 		0.0217
(0.149) 		0.108
(0.363) 		0.145
(0.425) 		0.0006
(0.0175) 		1e-05
(0.00111) 		0.29
(0.619) 		0.00012
(0.00589) 		0.0251
(0.16) 		0.758
(1.00)
ALPK2 46 (9%) 443 0.0107
(0.0997) 		0.309
(0.637) 		0.0001
(0.00522) 		0.367
(0.696) 		0.0682
(0.281) 		0.799
(1.00) 		0.00047
(0.0149) 		1e-05
(0.00111) 		0.00234
(0.0416) 		7e-05
(0.00408) 		0.128
(0.398) 		0.28
(0.608)
ASXL1 46 (9%) 443 0.00971
(0.0936) 		0.338
(0.666) 		0.00445
(0.061) 		0.464
(0.791) 		0.415
(0.742) 		0.616
(0.915) 		0.019
(0.138) 		1e-05
(0.00111) 		0.00446
(0.061) 		0.0281
(0.17) 		0.708
(0.979) 		0.0664
(0.277)
MPHOSPH10 18 (4%) 471 0.00012
(0.00589) 		0.00586
(0.0694) 		0.0538
(0.252) 		0.528
(0.848) 		0.00323
(0.0511) 		3e-05
(0.0022) 		0.0256
(0.162) 		0.0482
(0.234) 		0.174
(0.472) 		0.34
(0.667)
TOP2B 25 (5%) 464 0.132
(0.405) 		0.637
(0.927) 		1e-05
(0.00111) 		0.563
(0.873) 		0.278
(0.606) 		0.62
(0.918) 		0.0369
(0.2) 		0.00018
(0.00778) 		0.0001
(0.00522) 		0.0195
(0.139) 		0.00373
(0.0556) 		0.189
(0.491)
HLA-A 19 (4%) 470 0.0226
(0.152) 		0.115
(0.376) 		0.00178
(0.035) 		0.0133
(0.114) 		0.488
(0.815) 		1
(1.00) 		6e-05
(0.00366) 		0.00012
(0.00589) 		0.106
(0.359) 		0.0326
(0.185) 		0.137
(0.413) 		1
(1.00)
CTNNB1 93 (19%) 396 0.789
(1.00) 		0.261
(0.584) 		0.644
(0.93) 		0.555
(0.87) 		5e-05
(0.00318) 		0.0299
(0.177) 		1e-05
(0.00111) 		1e-05
(0.00111) 		1e-05
(0.00111) 		1e-05
(0.00111) 		0.0557
(0.257) 		0.198
(0.501)
SAPS2 13 (3%) 476 0.00184
(0.0357) 		0.0395
(0.209) 		0.658
(0.945) 		0.917
(1.00) 		0.00227
(0.0408) 		1e-05
(0.00111) 		0.567
(0.874) 		0.00137
(0.0302) 		0.0141
(0.117) 		0.0833
(0.312)
MYST4 30 (6%) 459 0.00711
(0.0777) 		0.00085
(0.0219) 		0.0117
(0.106) 		0.163
(0.457) 		0.479
(0.807) 		0.336
(0.664) 		0.23
(0.55) 		0.00035
(0.0122) 		0.984
(1.00) 		0.00731
(0.079) 		0.00865
(0.0867) 		0.365
(0.694)
RBMX 20 (4%) 469 0.0807
(0.306) 		0.124
(0.391) 		0.00489
(0.0634) 		0.0401
(0.21) 		7e-05
(0.00408) 		2e-05
(0.0017) 		0.00906
(0.0891) 		0.0321
(0.183) 		0.593
(0.897) 		1
(1.00)
OXSM 14 (3%) 475 0.0264
(0.164) 		0.00618
(0.072) 		0.036
(0.197) 		0.581
(0.886) 		0.0412
(0.214) 		0.746
(1.00) 		0.982
(1.00) 		0.0534
(0.25) 		0.886
(1.00) 		0.0125
(0.11) 		0.0416
(0.215) 		0.32
(0.649)
NTAN1 10 (2%) 479 0.064
(0.275) 		0.0137
(0.115) 		0.00095
(0.0235) 		0.0252
(0.161) 		0.191
(0.493) 		0.189
(0.49) 		0.0941
(0.336) 		3e-05
(0.0022) 		0.0195
(0.14) 		0.0274
(0.168)
KCTD3 19 (4%) 470 0.0017
(0.0342) 		0.833
(1.00) 		5e-05
(0.00318) 		0.143
(0.421) 		0.253
(0.577) 		0.369
(0.698) 		0.0388
(0.207) 		1e-05
(0.00111) 		0.397
(0.722) 		0.0316
(0.182) 		0.00055
(0.0165) 		0.436
(0.763)
SHROOM4 28 (6%) 461 0.00564
(0.0679) 		0.0181
(0.134) 		0.00382
(0.056) 		0.616
(0.915) 		0.139
(0.415) 		0.43
(0.757) 		0.0882
(0.322) 		0.00037
(0.0126) 		0.00327
(0.0514) 		0.0205
(0.145) 		0.763
(1.00) 		0.4
(0.726)
USP7 26 (5%) 463 0.00568
(0.0683) 		0.337
(0.665) 		4e-05
(0.00269) 		0.176
(0.476) 		0.209
(0.516) 		0.112
(0.371) 		0.0423
(0.217) 		0.00041
(0.0135) 		0.269
(0.594) 		0.0216
(0.149) 		0.00798
(0.0836) 		0.127
(0.396)
GIGYF2 30 (6%) 459 0.00815
(0.0842) 		0.355
(0.683) 		0.00074
(0.0201) 		0.00103
(0.025) 		0.464
(0.79) 		0.696
(0.969) 		0.23
(0.55) 		2e-05
(0.0017) 		0.122
(0.388) 		0.0457
(0.228) 		0.016
(0.125) 		0.565
(0.874)
HIPK2 26 (5%) 463 0.122
(0.387) 		0.0132
(0.113) 		0.107
(0.361) 		0.467
(0.793) 		0.0111
(0.102) 		0.345
(0.673) 		0.014
(0.116) 		0.00015
(0.00691) 		0.0125
(0.11) 		0.018
(0.134) 		0.348
(0.676) 		0.426
(0.753)
SGK269 23 (5%) 466 0.00765
(0.0816) 		0.349
(0.676) 		7e-05
(0.00408) 		0.103
(0.356) 		0.165
(0.459) 		0.826
(1.00) 		0.00672
(0.0751) 		1e-05
(0.00111) 		0.022
(0.151) 		0.0169
(0.129) 		0.0692
(0.284) 		0.729
(0.997)
F8 41 (8%) 448 0.00311
(0.0499) 		0.0779
(0.301) 		7e-05
(0.00408) 		0.0673
(0.279) 		0.235
(0.555) 		0.772
(1.00) 		0.101
(0.351) 		5e-05
(0.00318) 		0.0448
(0.225) 		0.00532
(0.0658) 		0.0143
(0.118) 		0.323
(0.652)
MIER3 14 (3%) 475 0.00043
(0.014) 		0.00511
(0.0644) 		4e-05
(0.00269) 		0.779
(1.00) 		0.462
(0.788) 		0.395
(0.72) 		0.0987
(0.345) 		0.0124
(0.11) 		0.0282
(0.17) 		0.00491
(0.0634)
MSH6 45 (9%) 444 0.0117
(0.106) 		0.00838
(0.0852) 		0.0166
(0.128) 		0.358
(0.687) 		0.0862
(0.317) 		0.0962
(0.34) 		0.114
(0.375) 		0.0058
(0.0689) 		0.00041
(0.0135) 		0.0255
(0.162) 		0.48
(0.808) 		0.856
(1.00)
PPARGC1A 23 (5%) 466 0.00593
(0.0699) 		0.00063
(0.0181) 		0.00354
(0.0542) 		0.278
(0.606) 		0.782
(1.00) 		0.117
(0.379) 		0.263
(0.589) 		0.0051
(0.0643) 		0.07
(0.285) 		0.00525
(0.0653) 		0.0239
(0.157) 		0.67
(0.954)
ATP6V1B1 16 (3%) 473 0.0141
(0.117) 		0.106
(0.36) 		0.00073
(0.0199) 		0.0359
(0.197) 		0.875
(1.00) 		0.0481
(0.234) 		0.738
(1.00) 		0.0162
(0.126) 		0.354
(0.682) 		0.157
(0.445) 		0.0165
(0.127) 		0.564
(0.873)
G3BP2 10 (2%) 479 0.0078
(0.0825) 		1
(1.00) 		0.0008
(0.021) 		0.126
(0.394) 		0.0328
(0.185) 		0.165
(0.459) 		0.0122
(0.109) 		0.0259
(0.163) 		0.0834
(0.313) 		0.191
(0.494) 		0.0255
(0.162) 		0.871
(1.00)
PKDREJ 36 (7%) 453 0.152
(0.436) 		0.175
(0.474) 		0.00879
(0.0873) 		0.364
(0.692) 		0.0563
(0.258) 		0.018
(0.134) 		0.00303
(0.0493) 		0.00012
(0.00589) 		0.0105
(0.0983) 		0.00115
(0.0269) 		0.236
(0.557) 		0.205
(0.511)
C14ORF43 20 (4%) 469 0.255
(0.578) 		0.019
(0.138) 		0.00029
(0.0107) 		0.068
(0.281) 		0.235
(0.556) 		0.132
(0.405) 		0.0215
(0.148) 		1e-05
(0.00111) 		0.161
(0.453) 		0.00644
(0.0737) 		2e-05
(0.0017) 		0.163
(0.457)
MKI67 44 (9%) 445 1e-05
(0.00111) 		1e-05
(0.00111) 		0.00028
(0.0104) 		0.282
(0.611) 		0.142
(0.419) 		0.893
(1.00) 		0.828
(1.00) 		2e-05
(0.0017) 		0.487
(0.814) 		0.00725
(0.0787) 		0.00112
(0.0265) 		0.499
(0.825)
ERBB3 30 (6%) 459 0.0942
(0.336) 		0.0214
(0.148) 		0.00214
(0.0391) 		0.0626
(0.271) 		0.496
(0.822) 		0.797
(1.00) 		0.0253
(0.161) 		0.0403
(0.211) 		0.0745
(0.293) 		0.00863
(0.0866) 		0.0389
(0.207) 		0.563
(0.873)
KCNH7 38 (8%) 451 0.00158
(0.0328) 		0.00481
(0.0627) 		0.0647
(0.275) 		0.0338
(0.189) 		0.0018
(0.0352) 		0.0992
(0.346) 		0.243
(0.567) 		0.0053
(0.0657) 		0.433
(0.76) 		0.0199
(0.142) 		0.274
(0.601) 		0.26
(0.583)
DNAH8 67 (14%) 422 0.00027
(0.0101) 		0.0632
(0.273) 		0.00027
(0.0101) 		0.271
(0.596) 		0.116
(0.379) 		0.538
(0.858) 		0.0257
(0.162) 		0.00073
(0.0199) 		0.0637
(0.274) 		0.0342
(0.19) 		0.00635
(0.0732) 		0.27
(0.595)
IL1RAPL1 28 (6%) 461 0.061
(0.269) 		0.549
(0.866) 		0.00898
(0.0885) 		0.655
(0.942) 		0.041
(0.213) 		0.0346
(0.192) 		0.374
(0.704) 		0.0165
(0.127) 		0.0319
(0.183) 		0.102
(0.353) 		0.011
(0.102) 		0.694
(0.969)
KIAA1797 24 (5%) 465 0.00125
(0.0287) 		0.244
(0.569) 		0.00201
(0.0376) 		0.183
(0.484) 		0.345
(0.673) 		0.957
(1.00) 		0.0376
(0.203) 		0.00075
(0.0202) 		0.248
(0.573) 		0.00158
(0.0328) 		0.0238
(0.157) 		0.892
(1.00)
RELN 71 (15%) 418 0.0005
(0.0156) 		0.0168
(0.128) 		2e-05
(0.0017) 		0.541
(0.861) 		0.249
(0.576) 		1
(1.00) 		0.162
(0.455) 		1e-05
(0.00111) 		0.153
(0.438) 		0.0014
(0.0305) 		0.00238
(0.0419) 		0.927
(1.00)
EGFR 84 (17%) 405 0.164
(0.457) 		0.0101
(0.0961) 		0.199
(0.503) 		0.39
(0.716) 		0.0169
(0.129) 		0.442
(0.769) 		1e-05
(0.00111) 		1e-05
(0.00111) 		1e-05
(0.00111) 		2e-05
(0.0017) 		0.312
(0.639) 		0.635
(0.927)
EPHA3 65 (13%) 424 0.00019
(0.00802) 		0.0411
(0.214) 		0.0314
(0.182) 		0.123
(0.389) 		0.00645
(0.0737) 		0.841
(1.00) 		0.139
(0.415) 		3e-05
(0.0022) 		0.161
(0.454) 		0.00735
(0.0793) 		0.406
(0.731) 		0.108
(0.363)
GRM8 22 (4%) 467 0.0229
(0.153) 		0.252
(0.577) 		0.00464
(0.0619) 		0.0206
(0.145) 		0.213
(0.522) 		0.826
(1.00) 		0.0224
(0.152) 		0.00019
(0.00802) 		0.0662
(0.277) 		0.00076
(0.0204) 		0.159
(0.45) 		0.303
(0.633)
ZNF644 21 (4%) 468 0.0272
(0.167) 		0.00665
(0.0747) 		0.0103
(0.0969) 		0.00988
(0.0947) 		0.145
(0.425) 		0.592
(0.896) 		0.104
(0.357) 		0.0187
(0.136) 		0.798
(1.00) 		0.0163
(0.127) 		0.245
(0.57) 		0.518
(0.84)
RBL2 23 (5%) 466 0.00307
(0.0496) 		0.00355
(0.0542) 		0.00863
(0.0866) 		0.00794
(0.0834) 		0.271
(0.596) 		0.912
(1.00) 		0.238
(0.56) 		0.00233
(0.0415) 		0.177
(0.477) 		0.00568
(0.0683) 		0.27
(0.595) 		0.219
(0.532)
MAP2K4 34 (7%) 455 0.27
(0.595) 		0.358
(0.687) 		0.0308
(0.18) 		0.00446
(0.061) 		0.571
(0.878) 		0.426
(0.753) 		0.0474
(0.233) 		0.0986
(0.345) 		0.0177
(0.133) 		0.0334
(0.187) 		0.00895
(0.0884) 		0.923
(1.00)
CCDC88A 36 (7%) 453 0.0101
(0.096) 		0.0939
(0.336) 		0.00124
(0.0286) 		0.0333
(0.187) 		0.112
(0.372) 		0.719
(0.988) 		0.0364
(0.198) 		0.00049
(0.0153) 		0.122
(0.388) 		0.0452
(0.226) 		0.135
(0.411) 		0.341
(0.668)
PLXNA3 19 (4%) 470 0.00328
(0.0515) 		0.0189
(0.137) 		0.461
(0.788) 		0.609
(0.91) 		0.00207
(0.0383) 		1e-05
(0.00111) 		0.00024
(0.00936) 		0.0835
(0.313) 		0.00248
(0.0433) 		1
(1.00)
PIK3C3 26 (5%) 463 0.00347
(0.0535) 		0.00671
(0.075) 		0.00504
(0.064) 		0.675
(0.956) 		0.204
(0.51) 		0.217
(0.529) 		0.339
(0.666) 		0.00198
(0.0373) 		0.531
(0.851) 		0.00072
(0.0198) 		0.0127
(0.111) 		0.787
(1.00)
ITPR1 41 (8%) 448 9e-05
(0.00485) 		0.00918
(0.09) 		1e-05
(0.00111) 		0.541
(0.861) 		0.42
(0.747) 		0.92
(1.00) 		0.471
(0.799) 		1e-05
(0.00111) 		0.0698
(0.285) 		0.00719
(0.0782) 		0.00017
(0.00754) 		0.876
(1.00)
IQSEC2 17 (3%) 472 0.37
(0.7) 		0.0594
(0.267) 		0.0152
(0.123) 		0.00472
(0.0621) 		0.48
(0.808) 		0.339
(0.666) 		3e-05
(0.0022) 		1e-05
(0.00111) 		0.0083
(0.0848) 		0.0001
(0.00522)
DSG4 24 (5%) 465 0.00126
(0.0287) 		0.00526
(0.0654) 		1e-05
(0.00111) 		0.518
(0.84) 		0.247
(0.573) 		0.288
(0.617) 		0.853
(1.00) 		0.00039
(0.013) 		0.299
(0.629) 		0.0189
(0.137) 		0.0143
(0.118) 		0.234
(0.555)
ATAD5 25 (5%) 464 0.00103
(0.025) 		0.308
(0.637) 		0.00039
(0.013) 		0.283
(0.611) 		0.57
(0.877) 		0.907
(1.00) 		0.0478
(0.233) 		6e-05
(0.00366) 		0.538
(0.858) 		0.0002
(0.00826) 		2e-05
(0.0017) 		0.166
(0.46)
WNK4 12 (2%) 477 0.121
(0.387) 		0.0134
(0.114) 		0.00218
(0.0397) 		0.113
(0.373) 		0.0472
(0.232) 		0.69
(0.967) 		0.0295
(0.176) 		0.00057
(0.0169) 		0.522
(0.843) 		0.0405
(0.212)
ASPM 47 (10%) 442 0.00175
(0.0347) 		0.0017
(0.0342) 		1e-05
(0.00111) 		0.215
(0.526) 		0.0482
(0.234) 		0.613
(0.913) 		0.321
(0.65) 		4e-05
(0.00269) 		0.544
(0.864) 		0.00977
(0.0939) 		0.48
(0.808) 		0.707
(0.978)
TNRC6C 20 (4%) 469 0.00338
(0.0525) 		0.0623
(0.271) 		1e-05
(0.00111) 		0.00928
(0.0905) 		0.347
(0.674) 		0.679
(0.96) 		0.0209
(0.146) 		1e-05
(0.00111) 		0.0672
(0.279) 		0.00317
(0.0505)
WWC3 27 (6%) 462 0.00259
(0.0445) 		0.0488
(0.236) 		0.00146
(0.0312) 		0.412
(0.739) 		0.00668
(0.0748) 		0.303
(0.633) 		0.326
(0.655) 		0.00159
(0.0329) 		0.0903
(0.327) 		0.00722
(0.0785) 		0.133
(0.408) 		0.295
(0.624)
EYS 41 (8%) 448 0.00148
(0.0315) 		3e-05
(0.0022) 		0.00058
(0.0171) 		0.227
(0.544) 		0.765
(1.00) 		0.672
(0.955) 		0.114
(0.374) 		1e-05
(0.00111) 		0.268
(0.594) 		0.00683
(0.0759) 		0.00025
(0.00959) 		0.405
(0.73)
NIPBL 37 (8%) 452 0.0001
(0.00522) 		0.00803
(0.0836) 		1e-05
(0.00111) 		0.012
(0.108) 		0.0581
(0.263) 		1
(1.00) 		0.419
(0.747) 		0.00138
(0.0303) 		0.0258
(0.163) 		0.0912
(0.329) 		0.135
(0.411) 		0.383
(0.712)
ADNP2 17 (3%) 472 0.0159
(0.125) 		0.175
(0.474) 		0.0153
(0.123) 		0.00893
(0.0882) 		0.413
(0.74) 		0.611
(0.911) 		0.00237
(0.0418) 		0.00045
(0.0144) 		0.3
(0.63) 		0.00187
(0.0359) 		0.135
(0.411) 		0.562
(0.873)
NOD2 20 (4%) 469 0.0655
(0.276) 		0.349
(0.677) 		1e-05
(0.00111) 		0.194
(0.497) 		0.0244
(0.158) 		0.157
(0.445) 		0.0316
(0.182) 		0.00028
(0.0104) 		0.0242
(0.158) 		0.0458
(0.228) 		0.703
(0.975) 		0.841
(1.00)
UPF2 19 (4%) 470 0.00143
(0.0309) 		0.0204
(0.144) 		7e-05
(0.00408) 		0.0466
(0.23) 		0.437
(0.764) 		0.527
(0.847) 		0.00923
(0.0902) 		0.00538
(0.0663) 		0.288
(0.616) 		0.0977
(0.343) 		0.0866
(0.318) 		0.376
(0.706)
ARHGAP32 26 (5%) 463 0.0014
(0.0305) 		0.016
(0.125) 		0.0208
(0.146) 		0.00951
(0.0922) 		0.966
(1.00) 		0.862
(1.00) 		0.13
(0.401) 		0.0112
(0.103) 		0.623
(0.921) 		0.00235
(0.0416)
GNAS 36 (7%) 453 0.206
(0.512) 		0.199
(0.503) 		0.0317
(0.183) 		0.504
(0.83) 		0.308
(0.637) 		0.173
(0.47) 		0.00036
(0.0124) 		2e-05
(0.0017) 		0.0224
(0.152) 		0.0128
(0.111) 		0.00654
(0.0741) 		0.077
(0.299)
BAIAP2L1 13 (3%) 476 0.00886
(0.0877) 		0.0369
(0.2) 		0.512
(0.834) 		1
(1.00) 		0.0138
(0.115) 		2e-05
(0.0017) 		0.271
(0.596) 		0.0363
(0.198) 		0.0242
(0.158) 		0.869
(1.00)
ANKRD17 30 (6%) 459 0.00311
(0.0499) 		0.0395
(0.209) 		0.00015
(0.00691) 		0.125
(0.393) 		0.386
(0.713) 		0.198
(0.5) 		0.0714
(0.288) 		1e-05
(0.00111) 		0.0818
(0.31) 		0.00017
(0.00754) 		0.00291
(0.0482) 		0.38
(0.71)
CDH10 42 (9%) 447 0.00015
(0.00691) 		0.00131
(0.0293) 		2e-05
(0.0017) 		0.67
(0.954) 		0.379
(0.709) 		0.456
(0.783) 		0.281
(0.609) 		2e-05
(0.0017) 		0.0846
(0.315) 		0.00218
(0.0397) 		0.00488
(0.0633) 		0.15
(0.433)
MAP4K4 21 (4%) 468 0.00557
(0.0675) 		0.0156
(0.124) 		0.0015
(0.0317) 		0.0675
(0.28) 		0.073
(0.291) 		0.043
(0.219) 		0.095
(0.338) 		0.00135
(0.0298) 		0.101
(0.351) 		0.00638
(0.0734) 		0.872
(1.00) 		0.84
(1.00)
PAX6 16 (3%) 473 0.0272
(0.167) 		0.00644
(0.0737) 		0.00655
(0.0742) 		0.0475
(0.233) 		0.211
(0.52) 		0.574
(0.88) 		0.0868
(0.319) 		0.028
(0.17) 		0.437
(0.764) 		0.0148
(0.121) 		0.783
(1.00) 		1
(1.00)
AP1G2 15 (3%) 474 0.00176
(0.0347) 		0.00053
(0.0162) 		0.00108
(0.0258) 		0.178
(0.477) 		0.0776
(0.3) 		0.635
(0.927) 		0.0315
(0.182) 		0.00485
(0.063) 		0.227
(0.545) 		0.0226
(0.152) 		0.0953
(0.338) 		0.867
(1.00)
YSK4 30 (6%) 459 0.00544
(0.0666) 		0.0396
(0.209) 		0.00119
(0.0276) 		0.841
(1.00) 		0.375
(0.705) 		1
(1.00) 		0.914
(1.00) 		0.0442
(0.223) 		0.872
(1.00) 		0.00476
(0.0623) 		0.00155
(0.0324) 		1
(1.00)
MAP3K4 39 (8%) 450 0.00861
(0.0865) 		0.00853
(0.0861) 		1e-05
(0.00111) 		0.413
(0.74) 		0.667
(0.951) 		0.712
(0.983) 		0.358
(0.687) 		0.00219
(0.0399) 		0.405
(0.73) 		0.0445
(0.224) 		0.027
(0.166) 		0.547
(0.865)
RTN4 21 (4%) 468 0.00286
(0.0477) 		0.00347
(0.0535) 		1e-05
(0.00111) 		0.0131
(0.113) 		0.493
(0.819) 		0.549
(0.866) 		0.139
(0.415) 		0.00471
(0.062) 		0.239
(0.563) 		0.374
(0.704) 		0.0007
(0.0194) 		0.869
(1.00)
ZMYND8 29 (6%) 460 0.0603
(0.268) 		0.546
(0.865) 		0.00247
(0.0432) 		0.014
(0.116) 		0.041
(0.213) 		0.211
(0.519) 		0.0112
(0.103) 		2e-05
(0.0017) 		0.0731
(0.291) 		0.00865
(0.0867) 		0.767
(1.00) 		0.0616
(0.269)
RAPGEF2 24 (5%) 465 0.00117
(0.0273) 		0.311
(0.638) 		1e-05
(0.00111) 		0.00757
(0.0811) 		0.0649
(0.276) 		1
(1.00) 		0.0298
(0.177) 		1e-05
(0.00111) 		0.145
(0.424) 		0.0471
(0.232) 		0.0929
(0.333) 		0.885
(1.00)
BCAR3 13 (3%) 476 0.00144
(0.031) 		0.101
(0.351) 		0.194
(0.497) 		0.326
(0.656) 		0.00279
(0.0467) 		0.00099
(0.0243) 		0.028
(0.17) 		0.00867
(0.0867) 		0.0247
(0.159) 		0.565
(0.874)
RYR2 104 (21%) 385 0.0568
(0.259) 		0.0202
(0.143) 		0.00064
(0.0182) 		0.13
(0.401) 		0.0121
(0.108) 		0.524
(0.845) 		0.0169
(0.129) 		4e-05
(0.00269) 		0.0248
(0.16) 		0.0509
(0.242) 		0.348
(0.676) 		0.376
(0.706)
VPS33A 8 (2%) 481 0.032
(0.183) 		0.00315
(0.0504) 		0.0049
(0.0634) 		0.037
(0.201) 		0.143
(0.42) 		0.189
(0.49) 		0.273
(0.599) 		0.00212
(0.0389) 		0.368
(0.697) 		0.0143
(0.118)
FSTL4 17 (3%) 472 0.784
(1.00) 		0.349
(0.677) 		0.00165
(0.0337) 		0.0182
(0.135) 		0.00871
(0.0869) 		0.0407
(0.212) 		0.00366
(0.0549) 		8e-05
(0.00452) 		0.0524
(0.247) 		0.33
(0.657) 		0.302
(0.632) 		0.757
(1.00)
PRKCD 13 (3%) 476 0.0175
(0.132) 		0.253
(0.577) 		0.00106
(0.0255) 		0.0763
(0.297) 		0.0261
(0.164) 		0.561
(0.872) 		0.0452
(0.226) 		0.00926
(0.0904) 		0.332
(0.66) 		0.0146
(0.12)
UHRF1BP1L 21 (4%) 468 0.00038
(0.0128) 		0.00022
(0.00882) 		0.026
(0.164) 		0.0842
(0.314) 		0.461
(0.788) 		0.61
(0.91) 		0.967
(1.00) 		0.0445
(0.224) 		0.175
(0.475) 		0.02
(0.142) 		0.0312
(0.181) 		1
(1.00)
THRAP3 12 (2%) 477 0.0234
(0.156) 		0.00635
(0.0732) 		0.00028
(0.0104) 		0.714
(0.984) 		0.0228
(0.153) 		0.0566
(0.259) 		0.611
(0.912) 		0.0345
(0.191) 		0.513
(0.835) 		0.00456
(0.0614)
PCDH19 22 (4%) 467 0.0158
(0.125) 		0.34
(0.667) 		0.021
(0.146) 		0.0249
(0.16) 		0.0425
(0.218) 		0.773
(1.00) 		0.0655
(0.276) 		0.0322
(0.183) 		0.12
(0.385) 		0.0194
(0.139) 		0.595
(0.899) 		0.393
(0.718)
MOV10L1 17 (3%) 472 0.0322
(0.183) 		0.0481
(0.234) 		0.166
(0.461) 		0.61
(0.91) 		0.0243
(0.158) 		0.879
(1.00) 		0.763
(1.00) 		0.0236
(0.156) 		0.0405
(0.212) 		0.0376
(0.203)
JAK1 20 (4%) 469 0.12
(0.385) 		0.184
(0.485) 		6e-05
(0.00366) 		0.00553
(0.0673) 		0.061
(0.269) 		0.301
(0.63) 		4e-05
(0.00269) 		1e-05
(0.00111) 		0.019
(0.138) 		0.0189
(0.137) 		0.307
(0.636) 		0.567
(0.875)
EPHA4 25 (5%) 464 0.0433
(0.22) 		0.0153
(0.123) 		0.00027
(0.0101) 		0.0759
(0.296) 		0.438
(0.765) 		0.916
(1.00) 		0.709
(0.98) 		0.00129
(0.0291) 		0.0222
(0.151) 		0.0172
(0.13) 		0.354
(0.683) 		0.116
(0.378)
MAP7 14 (3%) 475 0.00686
(0.0761) 		0.185
(0.485) 		0.00346
(0.0535) 		0.392
(0.717) 		0.26
(0.584) 		1
(1.00) 		0.0419
(0.216) 		0.0163
(0.127) 		0.0898
(0.326) 		0.00697
(0.0769) 		0.00445
(0.061) 		0.444
(0.771)
LMTK3 16 (3%) 473 0.00595
(0.0701) 		0.374
(0.704) 		0.211
(0.52) 		0.572
(0.879) 		0.00602
(0.0706) 		0.00016
(0.00722) 		0.00016
(0.00722) 		0.00507
(0.0641) 		0.00264
(0.0452) 		0.381
(0.711)
HERC1 33 (7%) 456 0.00109
(0.0259) 		0.0102
(0.0966) 		0.00064
(0.0182) 		0.00535
(0.066) 		0.128
(0.399) 		0.381
(0.71) 		0.538
(0.858) 		0.00084
(0.0218) 		0.451
(0.777) 		0.399
(0.725) 		0.00144
(0.031) 		0.19
(0.492)
C9ORF125 12 (2%) 477 0.00392
(0.0569) 		0.00339
(0.0526) 		0.00022
(0.00882) 		0.068
(0.281) 		0.318
(0.646) 		0.84
(1.00) 		0.0306
(0.179) 		2e-05
(0.0017) 		0.702
(0.974) 		0.0282
(0.17)
BTBD11 23 (5%) 466 0.0131
(0.113) 		0.0163
(0.127) 		1e-05
(0.00111) 		0.108
(0.363) 		0.679
(0.96) 		0.901
(1.00) 		0.268
(0.594) 		0.0142
(0.118) 		0.39
(0.716) 		0.0386
(0.206) 		0.0236
(0.156) 		0.432
(0.759)
ZBTB7C 15 (3%) 474 0.00863
(0.0866) 		0.00204
(0.0379) 		0.00249
(0.0434) 		0.583
(0.887) 		0.192
(0.494) 		0.0239
(0.157) 		0.663
(0.949) 		0.00055
(0.0165) 		0.16
(0.452) 		0.00134
(0.0297) 		0.084
(0.314) 		0.0624
(0.271)
ARHGAP28 14 (3%) 475 0.00454
(0.0613) 		0.0157
(0.124) 		4e-05
(0.00269) 		0.204
(0.51) 		0.506
(0.832) 		0.613
(0.913) 		0.121
(0.387) 		2e-05
(0.0017) 		0.435
(0.763) 		0.00089
(0.0226) 		0.025
(0.16) 		0.577
(0.884)
GNG12 8 (2%) 481 0.00451
(0.0612) 		0.00924
(0.0903) 		0.304
(0.634) 		0.683
(0.963) 		0.00034
(0.012) 		1e-05
(0.00111) 		0.00163
(0.0335) 		0.0713
(0.288) 		0.0237
(0.157) 		0.674
(0.955)
HECW1 39 (8%) 450 0.036
(0.197) 		0.58
(0.885) 		0.00132
(0.0294) 		0.292
(0.621) 		0.672
(0.955) 		0.506
(0.832) 		0.0286
(0.172) 		2e-05
(0.0017) 		0.0844
(0.314) 		0.0433
(0.22) 		0.00315
(0.0504) 		0.56
(0.871)
ZNF318 30 (6%) 459 0.00222
(0.0401) 		2e-05
(0.0017) 		7e-05
(0.00408) 		0.24
(0.564) 		0.0402
(0.211) 		0.709
(0.98) 		0.206
(0.513) 		8e-05
(0.00452) 		0.415
(0.743) 		0.00166
(0.0338) 		0.307
(0.636) 		1
(1.00)
FZD3 14 (3%) 475 0.00089
(0.0226) 		0.017
(0.13) 		0.00015
(0.00691) 		0.204
(0.511) 		1
(1.00) 		0.783
(1.00) 		0.0228
(0.153) 		0.0334
(0.187) 		0.411
(0.737) 		0.0377
(0.203)
CDH24 12 (2%) 477 0.0272
(0.167) 		0.253
(0.577) 		0.0466
(0.23) 		0.0261
(0.164) 		0.845
(1.00) 		0.164
(0.458) 		0.0251
(0.16) 		0.00609
(0.0712) 		0.416
(0.744) 		0.00462
(0.0617)
KIT 112 (23%) 377 0.0342
(0.19) 		1
(1.00) 		0.309
(0.637) 		0.834
(1.00) 		0.0213
(0.148) 		0.271
(0.596) 		1e-05
(0.00111) 		1e-05
(0.00111) 		1e-05
(0.00111) 		1e-05
(0.00111) 		0.481
(0.809) 		0.743
(1.00)
TRIP12 31 (6%) 458 0.00016
(0.00722) 		0.0167
(0.128) 		0.00013
(0.00626) 		0.00268
(0.0455) 		0.189
(0.49) 		0.418
(0.746) 		0.154
(0.44) 		1e-05
(0.00111) 		0.697
(0.97) 		0.00239
(0.042) 		0.0872
(0.32) 		0.779
(1.00)
VEPH1 20 (4%) 469 0.0173
(0.131) 		0.0037
(0.0553) 		0.00125
(0.0287) 		0.257
(0.58) 		0.0475
(0.233) 		0.479
(0.807) 		1
(1.00) 		0.0115
(0.104) 		0.771
(1.00) 		0.111
(0.369) 		0.0143
(0.118) 		0.644
(0.93)
GIMAP8 21 (4%) 468 0.00176
(0.0347) 		0.0152
(0.123) 		9e-05
(0.00485) 		0.0104
(0.0975) 		0.0112
(0.103) 		0.252
(0.577) 		0.753
(1.00) 		0.0297
(0.176) 		0.888
(1.00) 		0.673
(0.955) 		0.182
(0.483) 		0.349
(0.677)
TRPV2 12 (2%) 477 0.00702
(0.0772) 		0.0017
(0.0342) 		0.00017
(0.00754) 		0.252
(0.577) 		0.0753
(0.295) 		0.85
(1.00) 		0.14
(0.417) 		0.00208
(0.0384) 		0.44
(0.767) 		0.0215
(0.149) 		0.00471
(0.062) 		1
(1.00)
COL5A2 22 (4%) 467 0.00694
(0.0766) 		0.231
(0.551) 		0.0299
(0.177) 		0.00964
(0.0932) 		0.353
(0.68) 		0.329
(0.656) 		0.00184
(0.0357) 		0.0113
(0.104) 		0.386
(0.713) 		0.0262
(0.164) 		0.781
(1.00) 		1
(1.00)
ANGPTL2 13 (3%) 476 0.022
(0.15) 		0.0185
(0.136) 		4e-05
(0.00269) 		0.203
(0.509) 		0.272
(0.598) 		0.849
(1.00) 		0.0739
(0.292) 		1e-05
(0.00111) 		0.281
(0.609) 		0.0174
(0.132) 		0.00473
(0.0622) 		1
(1.00)
MUS81 7 (1%) 482 0.105
(0.359) 		0.004
(0.0578) 		0.0291
(0.174) 		0.594
(0.898) 		0.0137
(0.115) 		0.00559
(0.0675) 		0.0134
(0.114) 		0.0287
(0.172)
SOX9 41 (8%) 448 0.452
(0.778) 		0.255
(0.578) 		4e-05
(0.00269) 		0.0166
(0.128) 		0.965
(1.00) 		0.717
(0.987) 		0.00277
(0.0465) 		0.0102
(0.0964) 		0.308
(0.637) 		0.0166
(0.128) 		0.691
(0.968) 		0.962
(1.00)
FAM123B 60 (12%) 429 0.0254
(0.161) 		0.269
(0.594) 		0.00844
(0.0856) 		0.00964
(0.0932) 		0.75
(1.00) 		0.911
(1.00) 		0.339
(0.666) 		0.0326
(0.185) 		0.74
(1.00) 		0.00142
(0.0309) 		0.63
(0.926) 		0.468
(0.795)
B2M 17 (3%) 472 0.0737
(0.292) 		0.553
(0.87) 		0.00032
(0.0114) 		0.0129
(0.112) 		0.0318
(0.183) 		0.573
(0.88) 		0.0682
(0.281) 		0.00027
(0.0101) 		0.265
(0.59) 		0.187
(0.488) 		0.00156
(0.0325) 		0.576
(0.883)
MLH1 59 (12%) 430 0.22
(0.534) 		0.254
(0.577) 		0.0479
(0.234) 		0.171
(0.467) 		0.671
(0.955) 		0.723
(0.991) 		1e-05
(0.00111) 		1e-05
(0.00111) 		1e-05
(0.00111) 		2e-05
(0.0017) 		0.148
(0.429) 		0.0786
(0.302)
GGT1 10 (2%) 479 0.176
(0.476) 		0.00091
(0.0229) 		0.656
(0.943) 		0.763
(1.00) 		0.00156
(0.0325) 		0.00035
(0.0122) 		0.00616
(0.0718) 		0.263
(0.587) 		0.0294
(0.175) 		0.0529
(0.249)
EGR1 12 (2%) 477 0.0168
(0.128) 		0.027
(0.166) 		0.313
(0.64) 		0.641
(0.928) 		0.00282
(0.0471) 		0.00036
(0.0124) 		0.653
(0.939) 		0.0368
(0.2) 		0.0593
(0.267) 		0.449
(0.775)
BCL9 27 (6%) 462 0.049
(0.237) 		0.0165
(0.127) 		0.00055
(0.0165) 		0.713
(0.983) 		0.341
(0.668) 		0.843
(1.00) 		0.936
(1.00) 		0.00032
(0.0114) 		0.545
(0.864) 		0.00133
(0.0296) 		0.0799
(0.304) 		0.575
(0.881)
ST3GAL6 12 (2%) 477 0.0261
(0.164) 		0.0064
(0.0735) 		0.00307
(0.0496) 		0.124
(0.391) 		0.511
(0.833) 		0.911
(1.00) 		0.445
(0.771) 		0.0194
(0.139) 		0.294
(0.623) 		0.0453
(0.226) 		0.0847
(0.315) 		0.693
(0.969)
NLRC4 26 (5%) 463 0.00845
(0.0856) 		0.239
(0.563) 		0.0167
(0.128) 		0.0712
(0.288) 		0.535
(0.854) 		0.349
(0.677) 		0.17
(0.466) 		0.016
(0.125) 		0.119
(0.385) 		1e-05
(0.00111) 		0.0135
(0.115) 		0.339
(0.666)
PLAGL2 6 (1%) 483 0.0214
(0.148) 		0.0652
(0.276) 		1
(1.00) 		1
(1.00) 		0.00014
(0.0066) 		2e-05
(0.0017) 		0.00177
(0.0349) 		0.0227
(0.153)
C11ORF30 23 (5%) 466 0.00042
(0.0138) 		0.0036
(0.0546) 		9e-05
(0.00485) 		0.279
(0.606) 		0.0473
(0.232) 		0.623
(0.922) 		0.189
(0.49) 		0.0142
(0.117) 		0.182
(0.483) 		0.787
(1.00) 		0.645
(0.931) 		0.672
(0.955)
PRRG1 14 (3%) 475 0.269
(0.594) 		0.105
(0.359) 		0.0413
(0.214) 		0.247
(0.572) 		0.0017
(0.0342) 		2e-05
(0.0017) 		0.00448
(0.061) 		0.0216
(0.149) 		0.194
(0.497) 		0.175
(0.474)
PIK3R1 51 (10%) 438 0.317
(0.646) 		0.468
(0.795) 		0.0502
(0.241) 		0.406
(0.731) 		0.0183
(0.135) 		0.695
(0.969) 		0.0069
(0.0763) 		5e-05
(0.00318) 		0.0167
(0.128) 		0.0294
(0.175) 		0.935
(1.00) 		0.416
(0.743)
RB1 102 (21%) 387 0.136
(0.412) 		0.338
(0.666) 		0.109
(0.365) 		0.00812
(0.084) 		0.172
(0.469) 		0.499
(0.825) 		1e-05
(0.00111) 		1e-05
(0.00111) 		1e-05
(0.00111) 		1e-05
(0.00111) 		0.991
(1.00) 		0.783
(1.00)
ALDH1A3 19 (4%) 470 0.00888
(0.0878) 		0.243
(0.568) 		0.00129
(0.0291) 		0.0127
(0.111) 		0.226
(0.543) 		0.611
(0.912) 		0.0131
(0.113) 		0.00548
(0.0668) 		0.235
(0.556) 		0.124
(0.391) 		0.0862
(0.317) 		0.577
(0.884)
BCORL1 27 (6%) 462 0.0269
(0.166) 		0.255
(0.577) 		0.00172
(0.0343) 		0.15
(0.433) 		0.157
(0.445) 		0.447
(0.773) 		0.0182
(0.135) 		1e-05
(0.00111) 		0.124
(0.391) 		0.237
(0.559) 		0.00803
(0.0836) 		0.694
(0.969)
SLC12A6 26 (5%) 463 0.00083
(0.0215) 		0.579
(0.885) 		0.00035
(0.0122) 		0.0783
(0.301) 		0.673
(0.955) 		0.288
(0.617) 		0.00668
(0.0748) 		1e-05
(0.00111) 		0.0675
(0.279) 		0.0629
(0.272) 		0.00815
(0.0842) 		0.221
(0.535)
IDH1 21 (4%) 468 0.121
(0.387) 		0.0136
(0.115) 		0.236
(0.557) 		0.533
(0.853) 		0.673
(0.955) 		0.489
(0.816) 		0.009
(0.0887) 		0.00151
(0.0319) 		0.00422
(0.0592) 		0.105
(0.359) 		0.0453
(0.226) 		1
(1.00)
CASP8 18 (4%) 471 0.00054
(0.0164) 		1e-05
(0.00111) 		1e-05
(0.00111) 		0.114
(0.375) 		0.137
(0.413) 		0.0977
(0.343) 		0.221
(0.535) 		4e-05
(0.00269) 		0.0744
(0.293) 		0.00029
(0.0107) 		0.627
(0.925) 		0.448
(0.775)
HPS3 23 (5%) 466 0.00573
(0.0686) 		0.0151
(0.122) 		0.0182
(0.135) 		0.285
(0.613) 		0.212
(0.521) 		0.772
(1.00) 		0.509
(0.832) 		0.0049
(0.0634) 		0.0853
(0.316) 		0.0429
(0.219) 		0.0596
(0.267) 		0.449
(0.775)
GLI1 21 (4%) 468 0.051
(0.243) 		0.231
(0.551) 		0.00777
(0.0824) 		0.204
(0.51) 		0.0308
(0.18) 		0.534
(0.854) 		0.0548
(0.255) 		6e-05
(0.00366) 		0.00224
(0.0404) 		0.264
(0.589) 		0.0313
(0.182) 		0.885
(1.00)
BCL9L 25 (5%) 464 0.174
(0.473) 		0.794
(1.00) 		0.00129
(0.0291) 		0.0639
(0.274) 		0.0477
(0.233) 		0.502
(0.829) 		0.034
(0.189) 		0.00178
(0.035) 		0.738
(1.00) 		0.361
(0.69) 		0.0237
(0.157) 		0.756
(1.00)
ARFGEF1 37 (8%) 452 1e-05
(0.00111) 		0.0407
(0.212) 		0.00053
(0.0162) 		1
(1.00) 		0.582
(0.887) 		0.42
(0.748) 		0.187
(0.488) 		0.00274
(0.0462) 		0.244
(0.569) 		0.00143
(0.0309) 		0.188
(0.49) 		0.778
(1.00)
ECT2 19 (4%) 470 0.00729
(0.0789) 		0.0141
(0.117) 		0.0468
(0.231) 		1
(1.00) 		0.144
(0.424) 		0.35
(0.678) 		0.638
(0.927) 		0.00628
(0.0727) 		0.249
(0.575) 		0.0177
(0.133) 		0.347
(0.675) 		0.52
(0.841)
IL12RB2 19 (4%) 470 0.00539
(0.0663) 		0.88
(1.00) 		0.00118
(0.0275) 		0.432
(0.759) 		0.0321
(0.183) 		0.508
(0.832) 		0.155
(0.443) 		0.00624
(0.0724) 		0.794
(1.00) 		0.0655
(0.276) 		0.00028
(0.0104) 		0.921
(1.00)
CAB39L 10 (2%) 479 0.00077
(0.0205) 		0.00979
(0.0941) 		0.0519
(0.246) 		0.272
(0.597) 		0.0105
(0.0983) 		2e-05
(0.0017) 		0.189
(0.49) 		0.158
(0.449) 		0.00417
(0.0588) 		1
(1.00)
ARHGAP5 23 (5%) 466 0.00627
(0.0727) 		0.545
(0.864) 		0.00093
(0.0233) 		0.0741
(0.292) 		0.391
(0.716) 		0.582
(0.887) 		0.266
(0.591) 		0.00026
(0.00988) 		0.832
(1.00) 		0.00075
(0.0202) 		0.0253
(0.161) 		0.547
(0.865)
EP400 40 (8%) 449 0.00449
(0.0611) 		0.00748
(0.0803) 		0.0258
(0.163) 		0.165
(0.459) 		0.915
(1.00) 		0.612
(0.912) 		0.21
(0.518) 		0.00316
(0.0504) 		0.875
(1.00) 		0.00208
(0.0384) 		1
(1.00) 		0.598
(0.901)
PDGFRA 54 (11%) 435 0.0183
(0.135) 		0.509
(0.832) 		0.103
(0.356) 		0.852
(1.00) 		0.462
(0.788) 		0.894
(1.00) 		0.0393
(0.209) 		2e-05
(0.0017) 		0.00458
(0.0614) 		0.0226
(0.152) 		0.809
(1.00) 		0.191
(0.493)
RBAK 18 (4%) 471 0.00779
(0.0825) 		1
(1.00) 		0.107
(0.361) 		0.715
(0.986) 		0.11
(0.369) 		0.0617
(0.27) 		0.0104
(0.0975) 		0.00258
(0.0444) 		0.0327
(0.185) 		0.141
(0.417) 		0.0445
(0.224) 		1
(1.00)
EIF2AK4 20 (4%) 469 0.00369
(0.0552) 		0.0215
(0.149) 		0.00291
(0.0482) 		0.11
(0.369) 		0.00468
(0.0619) 		0.535
(0.855) 		0.0939
(0.336) 		0.0147
(0.12) 		0.171
(0.467) 		0.0528
(0.249) 		0.872
(1.00) 		0.84
(1.00)
DNAH12 25 (5%) 464 0.00187
(0.0359) 		0.015
(0.122) 		2e-05
(0.0017) 		0.124
(0.39) 		0.784
(1.00) 		0.571
(0.878) 		0.00289
(0.048) 		0.00308
(0.0497) 		0.125
(0.393) 		0.0502
(0.241) 		0.665
(0.95) 		0.633
(0.927)
E2F7 26 (5%) 463 0.0067
(0.075) 		0.0394
(0.209) 		0.00727
(0.0787) 		0.421
(0.749) 		0.676
(0.957) 		0.857
(1.00) 		0.911
(1.00) 		0.00316
(0.0504) 		0.304
(0.634) 		0.0388
(0.207) 		0.0712
(0.288) 		0.578
(0.884)
SMTN 16 (3%) 473 6e-05
(0.00366) 		0.013
(0.112) 		0.0606
(0.268) 		0.165
(0.459) 		0.00125
(0.0287) 		1e-05
(0.00111) 		0.672
(0.955) 		0.0403
(0.211) 		0.095
(0.338) 		0.87
(1.00)
AKAP3 23 (5%) 466 0.161
(0.454) 		1
(1.00) 		0.034
(0.189) 		0.0101
(0.0962) 		0.325
(0.655) 		0.318
(0.647) 		0.014
(0.117) 		0.0457
(0.228) 		0.659
(0.945) 		0.0355
(0.195) 		0.327
(0.656) 		0.428
(0.755)
CBL 39 (8%) 450 0.0514
(0.244) 		1
(1.00) 		0.877
(1.00) 		0.484
(0.811) 		0.425
(0.753) 		0.646
(0.933) 		0.00771
(0.082) 		0.00021
(0.00856) 		0.00184
(0.0357) 		0.00313
(0.0502) 		0.0101
(0.096) 		0.518
(0.84)
TET3 24 (5%) 465 0.942
(1.00) 		0.657
(0.944) 		0.00301
(0.0491) 		0.0316
(0.182) 		0.831
(1.00) 		0.268
(0.594) 		0.0885
(0.323) 		0.00619
(0.0721) 		0.151
(0.436) 		0.0066
(0.0743) 		0.00038
(0.0128) 		0.643
(0.93)
KDM3B 34 (7%) 455 0.00728
(0.0788) 		0.0312
(0.181) 		0.0272
(0.167) 		0.314
(0.642) 		0.507
(0.832) 		0.898
(1.00) 		0.486
(0.814) 		0.0387
(0.207) 		0.21
(0.519) 		0.00168
(0.034) 		0.0613
(0.269) 		0.704
(0.975)
ERBB2IP 18 (4%) 471 0.00092
(0.0231) 		0.242
(0.566) 		0.00331
(0.0517) 		0.0404
(0.211) 		0.248
(0.574) 		0.553
(0.87) 		0.00168
(0.034) 		0.00666
(0.0747) 		0.264
(0.589) 		0.253
(0.577) 		0.39
(0.716) 		0.757
(1.00)
KRAS 231 (47%) 258 2e-05
(0.0017) 		3e-05
(0.0022) 		0.192
(0.494) 		0.00144
(0.031) 		0.519
(0.84) 		0.389
(0.716) 		3e-05
(0.0022) 		7e-05
(0.00408) 		0.172
(0.469) 		0.582
(0.887) 		0.442
(0.769) 		0.7
(0.972)
LATS1 21 (4%) 468 0.0607
(0.268) 		0.547
(0.865) 		0.0001
(0.00522) 		0.0622
(0.271) 		0.25
(0.576) 		0.523
(0.845) 		0.0201
(0.143) 		0.0021
(0.0386) 		0.416
(0.744) 		0.00114
(0.0268) 		0.00396
(0.0573) 		0.162
(0.455)
OR1J2 13 (3%) 476 0.93
(1.00) 		0.431
(0.759) 		0.506
(0.832) 		0.012
(0.108) 		0.0116
(0.105) 		0.00666
(0.0747) 		0.0018
(0.0352) 		0.0413
(0.214)
ZC3H13 40 (8%) 449 0.00011
(0.00558) 		0.00011
(0.00558) 		0.0012
(0.0278) 		0.917
(1.00) 		0.157
(0.447) 		0.564
(0.873) 		0.155
(0.442) 		0.00095
(0.0235) 		0.281
(0.609) 		0.00683
(0.0759) 		0.736
(1.00) 		0.683
(0.963)
DDX59 13 (3%) 476 0.0109
(0.101) 		0.0391
(0.208) 		0.0449
(0.225) 		0.56
(0.871) 		0.003
(0.049) 		0.00193
(0.0367) 		0.631
(0.926) 		0.182
(0.483) 		0.629
(0.925) 		0.446
(0.773)
MET 49 (10%) 440 0.0226
(0.152) 		0.739
(1.00) 		0.453
(0.779) 		0.633
(0.927) 		0.41
(0.736) 		0.335
(0.663) 		1e-05
(0.00111) 		2e-05
(0.0017) 		1e-05
(0.00111) 		0.00361
(0.0547) 		0.15
(0.433) 		0.557
(0.87)
CHML 24 (5%) 465 0.165
(0.459) 		0.0184
(0.135) 		0.218
(0.531) 		0.0433
(0.22) 		0.688
(0.966) 		0.0226
(0.152) 		0.00375
(0.0556) 		0.0343
(0.191) 		0.133
(0.407) 		0.451
(0.777) 		0.547
(0.865) 		0.357
(0.686)
DEPDC5 24 (5%) 465 0.132
(0.405) 		0.116
(0.377) 		0.00013
(0.00626) 		0.145
(0.424) 		0.96
(1.00) 		0.955
(1.00) 		0.384
(0.712) 		3e-05
(0.0022) 		0.0237
(0.157) 		0.0205
(0.145) 		0.0333
(0.187) 		0.565
(0.873)
PTPRK 38 (8%) 451 0.00105
(0.0253) 		3e-05
(0.0022) 		3e-05
(0.0022) 		0.365
(0.694) 		0.449
(0.775) 		0.315
(0.643) 		0.398
(0.723) 		4e-05
(0.00269) 		0.0759
(0.296) 		0.00132
(0.0294) 		0.31
(0.637) 		0.134
(0.408)
BRCA2 58 (12%) 431 0.149
(0.432) 		0.506
(0.832) 		0.00667
(0.0748) 		0.271
(0.596) 		0.0816
(0.309) 		0.739
(1.00) 		0.00645
(0.0737) 		4e-05
(0.00269) 		0.00199
(0.0373) 		0.00447
(0.061) 		0.126
(0.394) 		0.442
(0.769)
LYST 40 (8%) 449 5e-05
(0.00318) 		0.0003
(0.0109) 		3e-05
(0.0022) 		0.643
(0.93) 		0.567
(0.875) 		0.495
(0.821) 		0.639
(0.927) 		0.00012
(0.00589) 		0.0778
(0.3) 		0.00116
(0.0272) 		0.851
(1.00) 		0.435
(0.762)
NGEF 18 (4%) 471 0.228
(0.548) 		0.903
(1.00) 		0.033
(0.185) 		0.523
(0.844) 		0.00874
(0.087) 		0.00409
(0.0583) 		0.034
(0.189) 		0.0421
(0.217) 		0.23
(0.55) 		0.189
(0.49)
JMJD1C 27 (6%) 462 0.00355
(0.0542) 		0.0547
(0.254) 		0.0414
(0.214) 		0.13
(0.401) 		0.0432
(0.22) 		0.0351
(0.194) 		0.487
(0.814) 		0.0239
(0.157) 		0.933
(1.00) 		0.63
(0.925) 		0.0991
(0.346) 		1
(1.00)
MSH2 37 (8%) 452 0.0361
(0.197) 		0.88
(1.00) 		0.0207
(0.145) 		0.189
(0.49) 		0.463
(0.79) 		0.699
(0.971) 		0.0155
(0.124) 		0.0001
(0.00522) 		0.0006
(0.0175) 		0.334
(0.662) 		0.191
(0.493) 		1
(1.00)
DNAH11 75 (15%) 414 0.023
(0.154) 		0.0181
(0.134) 		0.0156
(0.124) 		0.333
(0.661) 		0.0545
(0.254) 		0.56
(0.871) 		0.0446
(0.225) 		0.00832
(0.0849) 		0.22
(0.534) 		0.0815
(0.309) 		0.562
(0.873) 		0.556
(0.87)
ODZ1 77 (16%) 412 0.127
(0.397) 		0.106
(0.36) 		0.00523
(0.0651) 		0.126
(0.394) 		0.509
(0.832) 		0.047
(0.231) 		0.0293
(0.175) 		1e-05
(0.00111) 		0.0667
(0.278) 		0.00575
(0.0688) 		0.478
(0.806) 		0.381
(0.71)
FBN2 46 (9%) 443 0.00028
(0.0104) 		0.00075
(0.0202) 		0.00187
(0.0359) 		0.261
(0.584) 		0.0787
(0.302) 		0.365
(0.694) 		0.276
(0.603) 		0.00018
(0.00778) 		0.445
(0.772) 		0.00151
(0.0319) 		0.31
(0.637) 		0.792
(1.00)
JAK2 46 (9%) 443 0.00517
(0.0648) 		0.124
(0.391) 		0.435
(0.762) 		1
(1.00) 		0.322
(0.651) 		0.109
(0.365) 		0.00167
(0.0339) 		3e-05
(0.0022) 		2e-05
(0.0017) 		0.00223
(0.0403) 		0.325
(0.655) 		0.82
(1.00)
PTPN11 40 (8%) 449 0.308
(0.637) 		0.557
(0.87) 		0.832
(1.00) 		0.0414
(0.214) 		0.141
(0.418) 		0.17
(0.466) 		0.00052
(0.0161) 		1e-05
(0.00111) 		0.00079
(0.0209) 		0.0058
(0.0689) 		0.122
(0.387) 		0.114
(0.374)
KIAA1409 43 (9%) 446 2e-05
(0.0017) 		1e-05
(0.00111) 		9e-05
(0.00485) 		0.105
(0.359) 		0.195
(0.498) 		0.206
(0.512) 		0.0777
(0.3) 		1e-05
(0.00111) 		0.258
(0.581) 		0.00078
(0.0207) 		0.157
(0.445) 		0.874
(1.00)
DOCK1 27 (6%) 462 0.00366
(0.0549) 		0.796
(1.00) 		7e-05
(0.00408) 		0.468
(0.795) 		0.666
(0.951) 		0.618
(0.916) 		0.406
(0.731) 		0.00023
(0.00909) 		0.00267
(0.0455) 		0.00869
(0.0867) 		0.0922
(0.332) 		0.921
(1.00)
PHF3 26 (5%) 463 0.00511
(0.0644) 		0.0156
(0.124) 		0.154
(0.44) 		0.359
(0.687) 		0.0641
(0.275) 		0.726
(0.993) 		0.0257
(0.163) 		0.00193
(0.0367) 		0.0268
(0.166) 		0.0852
(0.316) 		0.596
(0.899) 		1
(1.00)
C9ORF131 13 (3%) 476 0.016
(0.125) 		0.233
(0.553) 		6e-05
(0.00366) 		0.032
(0.183) 		0.204
(0.511) 		0.36
(0.689) 		0.0244
(0.158) 		2e-05
(0.0017) 		0.251
(0.577) 		0.134
(0.409)
HAS2 10 (2%) 479 0.00772
(0.0821) 		0.182
(0.483) 		0.00447
(0.061) 		0.00146
(0.0312) 		1
(1.00) 		0.911
(1.00) 		0.0204
(0.144) 		0.0161
(0.126) 		1
(1.00) 		0.164
(0.459)
INSM2 11 (2%) 478 0.00881
(0.0875) 		0.036
(0.197) 		0.194
(0.497) 		0.363
(0.692) 		0.00154
(0.0323) 		2e-05
(0.0017) 		0.0691
(0.283) 		0.0114
(0.104) 		0.0957
(0.339) 		0.87
(1.00)
LNPEP 19 (4%) 470 0.00491
(0.0634) 		0.124
(0.391) 		0.00304
(0.0493) 		0.532
(0.851) 		0.759
(1.00) 		0.267
(0.592) 		0.107
(0.361) 		0.0429
(0.219) 		0.59
(0.895) 		0.0247
(0.159) 		0.0007
(0.0194) 		0.669
(0.954)
GOLGB1 42 (9%) 447 0.00096
(0.0237) 		0.07
(0.285) 		0.00152
(0.032) 		0.195
(0.498) 		0.238
(0.561) 		0.648
(0.935) 		0.245
(0.57) 		0.00267
(0.0455) 		0.55
(0.867) 		0.011
(0.101) 		0.0171
(0.13) 		0.331
(0.658)
HGS 10 (2%) 479 0.0562
(0.258) 		0.0268
(0.166) 		0.697
(0.97) 		0.363
(0.692) 		0.00221
(0.0401) 		2e-05
(0.0017) 		0.00023
(0.00909) 		0.214
(0.524) 		0.00432
(0.06) 		1
(1.00)
WBP11 8 (2%) 481 0.0234
(0.156) 		0.0264
(0.164) 		1
(1.00) 		0.493
(0.82) 		0.101
(0.35) 		0.0312
(0.181) 		0.00558
(0.0675) 		0.0232
(0.155)
MEPE 18 (4%) 471 0.00791
(0.0833) 		0.638
(0.927) 		0.0106
(0.0987) 		0.151
(0.436) 		0.374
(0.704) 		0.503
(0.83) 		0.237
(0.56) 		0.014
(0.116) 		0.0166
(0.128) 		0.0174
(0.132) 		0.39
(0.716) 		1
(1.00)
AKAP9 50 (10%) 439 4e-05
(0.00269) 		0.00091
(0.0229) 		1e-05
(0.00111) 		0.518
(0.84) 		0.577
(0.883) 		0.953
(1.00) 		0.052
(0.246) 		0.00025
(0.00959) 		0.12
(0.386) 		0.00169
(0.0341) 		0.0751
(0.294) 		0.103
(0.354)
KIF21A 29 (6%) 460 0.038
(0.204) 		0.308
(0.637) 		1e-05
(0.00111) 		0.245
(0.57) 		0.0288
(0.173) 		0.302
(0.631) 		0.0519
(0.246) 		0.00018
(0.00778) 		0.319
(0.648) 		0.006
(0.0706) 		0.143
(0.42) 		0.64
(0.928)
POLE 34 (7%) 455 7e-05
(0.00408) 		0.00108
(0.0258) 		1e-05
(0.00111) 		0.284
(0.612) 		0.248
(0.574) 		0.711
(0.982) 		0.368
(0.698) 		0.00037
(0.0126) 		0.162
(0.455) 		0.0477
(0.233) 		0.0782
(0.301) 		0.356
(0.685)
VAV2 19 (4%) 470 0.0478
(0.233) 		0.618
(0.916) 		0.248
(0.574) 		0.0749
(0.294) 		0.0285
(0.172) 		0.00168
(0.034) 		0.00241
(0.0424) 		0.104
(0.356) 		0.0239
(0.157) 		0.632
(0.927)
IBTK 23 (5%) 466 0.00164
(0.0336) 		0.0477
(0.233) 		0.0139
(0.116) 		0.563
(0.873) 		0.481
(0.809) 		0.329
(0.656) 		0.659
(0.945) 		0.00823
(0.0845) 		0.914
(1.00) 		0.0325
(0.184) 		0.592
(0.896) 		0.499
(0.825)
IQGAP1 24 (5%) 465 0.00014
(0.0066) 		2e-05
(0.0017) 		0.00497
(0.0637) 		0.175
(0.474) 		0.0898
(0.326) 		0.628
(0.925) 		0.537
(0.857) 		0.00048
(0.0151) 		0.0636
(0.274) 		0.00208
(0.0384) 		0.0793
(0.303) 		0.634
(0.927)
ADAMTS4 18 (4%) 471 0.153
(0.439) 		0.789
(1.00) 		0.00579
(0.0689) 		0.00268
(0.0455) 		0.208
(0.515) 		0.262
(0.586) 		0.0184
(0.135) 		2e-05
(0.0017) 		0.0006
(0.0175) 		0.058
(0.263) 		0.0969
(0.341) 		0.489
(0.816)
DOCK5 29 (6%) 460 0.00018
(0.00778) 		0.00013
(0.00626) 		1e-05
(0.00111) 		0.177
(0.477) 		0.199
(0.503) 		0.867
(1.00) 		0.519
(0.84) 		2e-05
(0.0017) 		0.211
(0.519) 		0.325
(0.655) 		0.00481
(0.0627) 		1
(1.00)
VPS13B 60 (12%) 429 0.138
(0.413) 		0.258
(0.58) 		0.0004
(0.0132) 		0.0238
(0.157) 		0.0847
(0.315) 		0.405
(0.73) 		0.0467
(0.23) 		0.00037
(0.0126) 		0.252
(0.577) 		0.00694
(0.0766) 		0.358
(0.687) 		0.121
(0.387)
HELQ 20 (4%) 469 0.00364
(0.0549) 		0.252
(0.577) 		0.00516
(0.0647) 		0.531
(0.851) 		0.222
(0.536) 		0.0538
(0.252) 		0.802
(1.00) 		0.00202
(0.0376) 		0.284
(0.612) 		0.0254
(0.161) 		0.0126
(0.111) 		0.194
(0.497)
SYNRG 18 (4%) 471 0.0221
(0.151) 		0.00063
(0.0181) 		0.0108
(0.1) 		0.00535
(0.066) 		0.124
(0.39) 		0.157
(0.447) 		0.23
(0.55) 		0.083
(0.312) 		0.584
(0.888) 		0.0163
(0.127) 		0.293
(0.622) 		0.729
(0.997)
TRIM33 20 (4%) 469 0.00679
(0.0757) 		0.305
(0.634) 		0.0139
(0.116) 		0.722
(0.991) 		0.138
(0.414) 		0.743
(1.00) 		0.325
(0.654) 		0.00016
(0.00722) 		0.399
(0.725) 		0.00657
(0.0743) 		0.06
(0.268) 		0.0271
(0.167)
ZFP3 12 (2%) 477 0.00138
(0.0303) 		0.0485
(0.235) 		0.00212
(0.0389) 		0.556
(0.87) 		0.0352
(0.194) 		0.637
(0.927) 		0.0794
(0.303) 		0.01
(0.0955) 		0.164
(0.459) 		0.0769
(0.299)
KLKB1 15 (3%) 474 0.00595
(0.0701) 		0.00166
(0.0338) 		0.00171
(0.0343) 		0.436
(0.763) 		0.112
(0.372) 		0.0896
(0.326) 		0.303
(0.633) 		0.00019
(0.00802) 		0.212
(0.521) 		0.00079
(0.0209)
GLI2 26 (5%) 463 0.546
(0.865) 		0.219
(0.533) 		0.39
(0.716) 		0.728
(0.995) 		0.0025
(0.0435) 		6e-05
(0.00366) 		0.00683
(0.0759) 		0.00645
(0.0737) 		0.0377
(0.203) 		0.772
(1.00)
HUWE1 47 (10%) 442 0.00018
(0.00778) 		0.00416
(0.0588) 		0.00746
(0.0802) 		0.059
(0.265) 		0.419
(0.747) 		0.444
(0.771) 		0.18
(0.48) 		7e-05
(0.00408) 		0.107
(0.361) 		0.00089
(0.0226) 		0.167
(0.461) 		0.92
(1.00)
TJP1 22 (4%) 467 0.00532
(0.0658) 		0.0155
(0.124) 		0.062
(0.27) 		0.269
(0.594) 		0.724
(0.992) 		1
(1.00) 		0.408
(0.734) 		0.0004
(0.0132) 		0.0476
(0.233) 		0.00645
(0.0737) 		1
(1.00) 		0.87
(1.00)
ALDOB 15 (3%) 474 0.0268
(0.166) 		0.00085
(0.0219) 		0.0001
(0.00522) 		0.0668
(0.278) 		0.199
(0.503) 		0.558
(0.87) 		0.0299
(0.177) 		0.00395
(0.0571) 		0.131
(0.403) 		0.274
(0.6) 		0.872
(1.00) 		0.564
(0.873)
PIK3R4 17 (3%) 472 0.0356
(0.196) 		0.063
(0.272) 		0.00806
(0.0838) 		0.582
(0.886) 		0.69
(0.968) 		0.769
(1.00) 		0.0444
(0.224) 		0.0331
(0.186) 		0.542
(0.862) 		0.456
(0.783) 		0.423
(0.751) 		0.0152
(0.123)
EPHB1 43 (9%) 446 0.0363
(0.198) 		0.58
(0.885) 		0.00117
(0.0273) 		0.738
(1.00) 		0.0884
(0.323) 		0.581
(0.886) 		0.00046
(0.0147) 		2e-05
(0.0017) 		0.0329
(0.185) 		0.145
(0.424) 		0.178
(0.477) 		0.52
(0.842)
LGR4 17 (3%) 472 0.221
(0.535) 		0.638
(0.927) 		2e-05
(0.0017) 		0.0194
(0.139) 		0.736
(1.00) 		0.822
(1.00) 		0.0208
(0.146) 		0.019
(0.138) 		0.016
(0.125) 		0.235
(0.555)
KIF16B 31 (6%) 458 0.00029
(0.0107) 		0.00016
(0.00722) 		0.00034
(0.012) 		0.703
(0.975) 		1
(1.00) 		0.119
(0.384) 		0.818
(1.00) 		0.00039
(0.013) 		0.124
(0.39) 		0.0119
(0.107) 		0.0741
(0.292) 		0.392
(0.717)
A2M 28 (6%) 461 0.00334
(0.0521) 		0.0166
(0.128) 		0.00985
(0.0945) 		0.284
(0.612) 		0.00345
(0.0534) 		0.16
(0.453) 		0.186
(0.486) 		0.0384
(0.206) 		0.685
(0.964) 		0.0597
(0.267) 		0.0954
(0.338) 		0.865
(1.00)
COL3A1 32 (7%) 457 0.0013
(0.0292) 		0.00092
(0.0231) 		0.00553
(0.0673) 		0.518
(0.84) 		0.292
(0.62) 		0.741
(1.00) 		0.735
(1.00) 		0.00064
(0.0182) 		0.0484
(0.235) 		0.192
(0.494) 		0.538
(0.858) 		0.921
(1.00)
KIAA0649 10 (2%) 479 0.00451
(0.0612) 		0.00966
(0.0933) 		0.0954
(0.338) 		0.809
(1.00) 		0.0241
(0.157) 		2e-05
(0.0017) 		0.162
(0.456) 		0.0387
(0.207)
POLQ 33 (7%) 456 0.0173
(0.131) 		0.374
(0.704) 		1e-05
(0.00111) 		0.0893
(0.325) 		0.00682
(0.0759) 		0.335
(0.663) 		0.0731
(0.291) 		0.00071
(0.0196) 		0.096
(0.34) 		0.00746
(0.0802) 		0.0583
(0.264) 		0.492
(0.818)
SMC1B 22 (4%) 467 0.00493
(0.0634) 		0.549
(0.866) 		0.00037
(0.0126) 		0.0362
(0.198) 		0.793
(1.00) 		0.523
(0.844) 		0.0602
(0.268) 		0.0216
(0.149) 		0.294
(0.623) 		0.112
(0.372) 		0.0149
(0.121) 		0.835
(1.00)
ITGB6 18 (4%) 471 0.0157
(0.124) 		0.0607
(0.268) 		0.0298
(0.177) 		0.141
(0.417) 		0.207
(0.513) 		0.413
(0.74) 		0.0249
(0.16) 		0.00082
(0.0214) 		0.106
(0.36) 		0.0746
(0.293) 		0.0256
(0.162) 		0.378
(0.708)
ARAP3 24 (5%) 465 0.00858
(0.0864) 		0.00184
(0.0357) 		0.00045
(0.0144) 		0.0518
(0.246) 		0.018
(0.134) 		0.536
(0.856) 		0.417
(0.745) 		0.00033
(0.0117) 		0.0906
(0.328) 		0.124
(0.39) 		0.327
(0.656) 		0.468
(0.795)
KIAA0556 24 (5%) 465 0.00922
(0.0902) 		0.0153
(0.123) 		0.019
(0.138) 		0.109
(0.366) 		0.0421
(0.217) 		0.274
(0.6) 		0.553
(0.87) 		0.0003
(0.0109) 		0.213
(0.522) 		0.0911
(0.329) 		0.669
(0.953) 		0.631
(0.926)
CBLN3 6 (1%) 483 0.0225
(0.152) 		0.292
(0.62) 		0.0298
(0.177) 		1
(1.00) 		0.00546
(0.0668) 		0.0209
(0.146) 		0.0144
(0.119) 		0.0695
(0.284)
CTNNA3 26 (5%) 463 0.137
(0.412) 		0.048
(0.234) 		0.00104
(0.0252) 		0.0117
(0.106) 		0.408
(0.734) 		0.288
(0.617) 		0.0623
(0.271) 		1e-05
(0.00111) 		0.337
(0.665) 		0.15
(0.434) 		0.0244
(0.158) 		1
(1.00)
AKAP11 25 (5%) 464 0.00091
(0.0229) 		0.34
(0.667) 		0.0349
(0.193) 		0.246
(0.572) 		0.048
(0.234) 		0.295
(0.624) 		0.333
(0.66) 		0.00353
(0.0542) 		0.209
(0.517) 		0.0294
(0.175) 		0.0722
(0.29) 		0.579
(0.884)
CETN3 6 (1%) 483 0.0226
(0.152) 		0.289
(0.618) 		0.00482
(0.0628) 		0.337
(0.665) 		0.00383
(0.0561) 		0.00129
(0.0291) 		0.0308
(0.18) 		0.0867
(0.318)
SFRS15 20 (4%) 469 0.0146
(0.12) 		0.0957
(0.339) 		3e-05
(0.0022) 		0.0241
(0.157) 		0.0543
(0.253) 		0.337
(0.665) 		0.203
(0.51) 		0.0113
(0.103) 		0.383
(0.712) 		0.115
(0.376) 		0.024
(0.157) 		0.13
(0.401)
PTPN14 21 (4%) 468 0.00716
(0.078) 		0.072
(0.289) 		0.00142
(0.0309) 		0.402
(0.728) 		0.116
(0.378) 		0.741
(1.00) 		0.252
(0.577) 		0.0174
(0.131) 		0.188
(0.49) 		0.0316
(0.182) 		0.0004
(0.0132) 		1
(1.00)
FZD6 15 (3%) 474 0.00403
(0.0579) 		0.638
(0.927) 		0.012
(0.108) 		0.851
(1.00) 		0.318
(0.647) 		0.636
(0.927) 		0.0573
(0.261) 		0.0143
(0.118) 		0.558
(0.87) 		0.00198
(0.0373) 		0.0131
(0.113) 		0.672
(0.955)
PPFIBP1 14 (3%) 475 0.0315
(0.182) 		0.0406
(0.212) 		0.00077
(0.0205) 		0.554
(0.87) 		0.0463
(0.229) 		1
(1.00) 		0.855
(1.00) 		0.0179
(0.134) 		0.0981
(0.344) 		0.095
(0.338) 		0.625
(0.923) 		0.471
(0.798)
NTNG1 17 (3%) 472 0.138
(0.414) 		0.835
(1.00) 		0.374
(0.704) 		0.022
(0.151) 		0.162
(0.455) 		0.945
(1.00) 		0.0117
(0.106) 		0.00932
(0.0908) 		0.018
(0.134) 		0.0196
(0.14) 		0.192
(0.495) 		0.129
(0.399)
CWF19L2 19 (4%) 470 0.00251
(0.0436) 		0.595
(0.899) 		0.00362
(0.0548) 		0.197
(0.499) 		0.171
(0.468) 		0.0494
(0.238) 		0.571
(0.878) 		0.0111
(0.102) 		0.715
(0.985) 		0.00222
(0.0401) 		0.268
(0.594) 		0.672
(0.955)
HIST2H2AC 6 (1%) 483 0.272
(0.598) 		0.14
(0.416) 		0.792
(1.00) 		0.422
(0.75) 		0.00765
(0.0816) 		0.0321
(0.183) 		0.00379
(0.056) 		0.0323
(0.184) 		0.416
(0.744) 		0.00512
(0.0645)
SETX 34 (7%) 455 0.00399
(0.0577) 		0.197
(0.499) 		0.0253
(0.161) 		0.345
(0.673) 		0.451
(0.777) 		0.48
(0.808) 		0.0579
(0.263) 		0.0041
(0.0584) 		0.535
(0.854) 		0.00928
(0.0905) 		0.00108
(0.0258) 		1
(1.00)
MED14 19 (4%) 470 0.011
(0.102) 		0.00043
(0.014) 		0.00015
(0.00691) 		0.617
(0.916) 		0.00296
(0.0487) 		0.234
(0.555) 		0.825
(1.00) 		0.127
(0.396) 		0.565
(0.873) 		0.0358
(0.196) 		0.179
(0.479) 		0.355
(0.683)
GGA2 13 (3%) 476 0.0179
(0.133) 		0.0141
(0.117) 		0.00123
(0.0283) 		0.327
(0.656) 		0.603
(0.905) 		0.4
(0.726) 		0.3
(0.629) 		0.03
(0.177) 		0.0318
(0.183) 		0.15
(0.433)
EXPH5 24 (5%) 465 0.00126
(0.0287) 		0.0484
(0.235) 		0.0104
(0.0977) 		0.0365
(0.199) 		0.0845
(0.314) 		0.111
(0.369) 		0.521
(0.842) 		0.0237
(0.157) 		0.233
(0.553) 		0.0635
(0.274) 		0.82
(1.00) 		0.22
(0.535)
LEPRE1 9 (2%) 480 0.0186
(0.136) 		0.079
(0.302) 		0.762
(1.00) 		0.189
(0.49) 		0.0002
(0.00826) 		1e-05
(0.00111) 		0.0301
(0.177) 		0.0194
(0.139) 		0.356
(0.685) 		0.87
(1.00)
CDC42BPA 30 (6%) 459 0.00656
(0.0742) 		0.00024
(0.00936) 		0.00054
(0.0164) 		0.592
(0.897) 		0.157
(0.445) 		0.49
(0.817) 		0.482
(0.809) 		0.00372
(0.0555) 		0.856
(1.00) 		0.00023
(0.00909) 		0.359
(0.687) 		0.869
(1.00)
NCOA5 13 (3%) 476 0.031
(0.181) 		0.00321
(0.0509) 		0.00167
(0.0339) 		0.143
(0.421) 		0.389
(0.716) 		0.468
(0.796) 		0.0358
(0.196) 		0.0025
(0.0435) 		0.245
(0.57) 		0.0857
(0.317) 		0.268
(0.594) 		0.128
(0.398)
ARHGAP27 12 (2%) 477 0.00732
(0.0791) 		0.00186
(0.0359) 		0.00285
(0.0476) 		1
(1.00) 		0.604
(0.905) 		1
(1.00) 		0.412
(0.739) 		0.00214
(0.0391) 		0.25
(0.577) 		0.00221
(0.0401)
C20ORF117 18 (4%) 471 0.0588
(0.265) 		0.213
(0.522) 		0.00159
(0.0329) 		0.177
(0.477) 		0.371
(0.701) 		0.22
(0.535) 		0.0463
(0.229) 		4e-05
(0.00269) 		0.544
(0.864) 		0.0332
(0.186) 		0.00304
(0.0493) 		0.543
(0.862)
SLC44A4 12 (2%) 477 0.121
(0.387) 		0.461
(0.788) 		0.00026
(0.00988) 		0.0766
(0.298) 		0.182
(0.483) 		0.85
(1.00) 		0.0294
(0.175) 		6e-05
(0.00366) 		0.0906
(0.328) 		0.0437
(0.222) 		0.0253
(0.161) 		0.671
(0.955)
PNPLA8 19 (4%) 470 0.0264
(0.164) 		0.00644
(0.0737) 		0.00064
(0.0182) 		0.377
(0.707) 		0.271
(0.596) 		0.65
(0.937) 		0.346
(0.673) 		0.0287
(0.172) 		0.454
(0.78) 		0.198
(0.5) 		0.0138
(0.115) 		0.866
(1.00)
RUNX2 9 (2%) 480 0.0315
(0.182) 		0.0598
(0.267) 		0.00143
(0.0309) 		0.251
(0.577) 		0.156
(0.444) 		0.0506
(0.242) 		0.0138
(0.115) 		0.0044
(0.0608) 		0.284
(0.611) 		0.153
(0.439) 		0.00061
(0.0178) 		0.87
(1.00)
HIF3A 15 (3%) 474 0.0271
(0.167) 		0.0192
(0.139) 		9e-05
(0.00485) 		0.0769
(0.299) 		0.419
(0.747) 		0.246
(0.571) 		0.0649
(0.276) 		6e-05
(0.00366) 		0.478
(0.806) 		0.0665
(0.277) 		0.00386
(0.0564) 		0.577
(0.884)
ATRX 33 (7%) 456 0.163
(0.456) 		0.0227
(0.153) 		0.00423
(0.0593) 		0.374
(0.704) 		0.262
(0.586) 		0.328
(0.656) 		0.028
(0.17) 		0.00182
(0.0355) 		0.0805
(0.306) 		0.0128
(0.111) 		0.932
(1.00) 		0.834
(1.00)
KCTD9 5 (1%) 484 0.0427
(0.219) 		0.327
(0.656) 		0.0108
(0.1) 		0.0985
(0.345) 		0.00025
(0.00959) 		0.00038
(0.0128) 		0.0585
(0.264) 		0.0129
(0.112) 		0.0962
(0.34) 		0.43
(0.757)
CHD7 39 (8%) 450 0.00057
(0.0169) 		0.162
(0.455) 		1e-05
(0.00111) 		0.362
(0.691) 		0.0786
(0.302) 		0.327
(0.656) 		0.23
(0.55) 		2e-05
(0.0017) 		0.573
(0.88) 		0.0148
(0.121) 		0.0316
(0.182) 		0.297
(0.626)
SAMD9 29 (6%) 460 0.0479
(0.234) 		0.689
(0.967) 		0.00411
(0.0585) 		0.11
(0.368) 		0.263
(0.589) 		0.933
(1.00) 		0.0012
(0.0278) 		0.00816
(0.0842) 		0.341
(0.668) 		0.00101
(0.0246) 		0.121
(0.387) 		0.568
(0.875)
MED13 22 (4%) 467 0.00541
(0.0664) 		0.0713
(0.288) 		0.00023
(0.00909) 		0.528
(0.848) 		0.573
(0.879) 		1
(1.00) 		0.0437
(0.222) 		0.0002
(0.00826) 		0.358
(0.687) 		0.0002
(0.00826) 		0.137
(0.413) 		1
(1.00)
TRIM46 15 (3%) 474 0.00013
(0.00626) 		0.0394
(0.209) 		0.736
(1.00) 		1
(1.00) 		0.0123
(0.109) 		0.00023
(0.00909) 		0.634
(0.927) 		0.0552
(0.256) 		0.0254
(0.161) 		0.87
(1.00)
CDK5RAP2 25 (5%) 464 0.016
(0.125) 		0.555
(0.87) 		0.00034
(0.012) 		0.305
(0.635) 		0.14
(0.416) 		0.15
(0.433) 		0.161
(0.454) 		2e-05
(0.0017) 		0.0788
(0.302) 		0.0268
(0.166) 		0.00363
(0.0549) 		0.577
(0.883)
YTHDF2 12 (2%) 477 0.00118
(0.0275) 		0.0549
(0.255) 		0.0747
(0.293) 		0.85
(1.00) 		0.0611
(0.269) 		0.00012
(0.00589) 		0.0352
(0.194) 		0.00909
(0.0893) 		0.0245
(0.158) 		0.633
(0.927)
C5ORF42 41 (8%) 448 0.0577
(0.262) 		0.161
(0.453) 		4e-05
(0.00269) 		0.00752
(0.0807) 		0.0118
(0.106) 		0.0333
(0.187) 		0.0792
(0.303) 		0.00195
(0.037) 		0.792
(1.00) 		0.109
(0.365) 		0.436
(0.763) 		0.659
(0.945)
HIF1A 12 (2%) 477 0.0326
(0.184) 		0.0401
(0.211) 		0.00025
(0.00959) 		0.0792
(0.303) 		0.247
(0.572) 		0.638
(0.927) 		0.248
(0.573) 		0.0106
(0.0992) 		0.216
(0.526) 		0.479
(0.808) 		0.0242
(0.158) 		0.871
(1.00)
C1S 13 (3%) 476 0.00382
(0.056) 		0.0449
(0.225) 		0.00882
(0.0875) 		0.603
(0.905) 		0.419
(0.747) 		0.743
(1.00) 		0.336
(0.664) 		0.0141
(0.117) 		0.974
(1.00) 		0.124
(0.392) 		0.00858
(0.0864) 		0.67
(0.954)
SNAPC2 6 (1%) 483 0.0226
(0.152) 		0.0361
(0.197) 		1
(1.00) 		0.77
(1.00) 		0.037
(0.201) 		0.0223
(0.152) 		0.259
(0.583) 		0.00602
(0.0706)
FCAMR 12 (2%) 477 0.00237
(0.0418) 		0.0683
(0.281) 		0.427
(0.754) 		0.724
(0.992) 		0.00748
(0.0803) 		1e-05
(0.00111) 		0.845
(1.00) 		0.0375
(0.202) 		0.00356
(0.0543) 		0.191
(0.493)
TBX4 11 (2%) 478 0.0163
(0.127) 		0.0609
(0.268) 		0.00821
(0.0844) 		0.125
(0.393) 		0.658
(0.945) 		0.528
(0.848) 		0.0734
(0.291) 		0.00016
(0.00722) 		0.703
(0.975) 		0.0116
(0.105) 		0.00467
(0.0619) 		1
(1.00)
TRIP6 11 (2%) 478 0.00813
(0.0841) 		0.0126
(0.111) 		0.656
(0.943) 		1
(1.00) 		5e-05
(0.00318) 		1e-05
(0.00111) 		0.0688
(0.282) 		0.331
(0.658) 		0.0029
(0.0481) 		1
(1.00)
HECW2 32 (7%) 457 0.00702
(0.0772) 		0.0252
(0.161) 		0.00091
(0.0229) 		0.363
(0.692) 		0.0574
(0.261) 		0.3
(0.63) 		0.352
(0.679) 		0.00441
(0.0608) 		0.212
(0.521) 		0.0371
(0.201) 		0.114
(0.373) 		1
(1.00)
MECOM 21 (4%) 468 0.00956
(0.0926) 		0.0622
(0.271) 		0.00188
(0.036) 		0.527
(0.847) 		0.236
(0.557) 		0.532
(0.852) 		0.218
(0.53) 		5e-05
(0.00318) 		0.918
(1.00) 		0.0239
(0.157) 		0.00386
(0.0564) 		0.579
(0.885)
MYO3A 43 (9%) 446 3e-05
(0.0022) 		0.00322
(0.051) 		0.0543
(0.253) 		0.752
(1.00) 		0.0128
(0.111) 		0.551
(0.868) 		0.409
(0.736) 		0.00105
(0.0253) 		0.0842
(0.314) 		0.585
(0.889) 		0.0321
(0.183) 		0.691
(0.968)
ABCD4 10 (2%) 479 0.0322
(0.183) 		0.00289
(0.048) 		0.00085
(0.0219) 		0.0646
(0.275) 		0.264
(0.59) 		1
(1.00) 		0.235
(0.556) 		0.00065
(0.0183) 		0.601
(0.904) 		0.042
(0.216)
REL 11 (2%) 478 0.065
(0.276) 		0.0128
(0.111) 		0.409
(0.735) 		0.221
(0.535) 		0.136
(0.412) 		0.0237
(0.157) 		0.0173
(0.131) 		0.0308
(0.18) 		0.12
(0.386) 		0.0183
(0.135) 		0.871
(1.00) 		0.564
(0.873)
IGFN1 17 (3%) 472 0.00367
(0.055) 		0.0623
(0.271) 		0.0329
(0.185) 		0.0536
(0.251) 		0.436
(0.763) 		0.891
(1.00) 		0.0109
(0.101) 		0.00233
(0.0415) 		0.143
(0.421) 		0.0866
(0.318) 		0.00476
(0.0623) 		0.696
(0.969)
NRAP 27 (6%) 462 0.00413
(0.0586) 		0.103
(0.356) 		0.00061
(0.0178) 		0.00507
(0.0641) 		0.159
(0.45) 		0.626
(0.924) 		0.0151
(0.122) 		0.00117
(0.0273) 		0.178
(0.477) 		0.0561
(0.258) 		0.302
(0.631) 		0.519
(0.84)
EPHA2 11 (2%) 478 0.0314
(0.182) 		0.00311
(0.0499) 		0.033
(0.185) 		0.204
(0.511) 		0.511
(0.833) 		1
(1.00) 		0.0748
(0.294) 		6e-05
(0.00366) 		0.621
(0.919) 		0.00012
(0.00589) 		0.136
(0.412) 		0.45
(0.776)
AOX1 13 (3%) 476 0.00736
(0.0794) 		0.00168
(0.034) 		0.0455
(0.227) 		0.634
(0.927) 		0.603
(0.905) 		0.839
(1.00) 		0.87
(1.00) 		0.0233
(0.155) 		0.269
(0.594) 		0.0261
(0.164) 		0.0598
(0.267) 		0.45
(0.776)
CUBN 58 (12%) 431 0.0228
(0.153) 		0.0685
(0.282) 		1e-05
(0.00111) 		0.0683
(0.281) 		0.979
(1.00) 		1
(1.00) 		0.06
(0.268) 		0.0002
(0.00826) 		0.0644
(0.275) 		0.00011
(0.00558) 		0.00029
(0.0107) 		0.202
(0.509)
ATP1A4 19 (4%) 470 0.00877
(0.0873) 		0.337
(0.665) 		0.00304
(0.0493) 		0.725
(0.993) 		0.319
(0.647) 		0.364
(0.693) 		0.851
(1.00) 		0.0216
(0.149) 		0.912
(1.00) 		0.0105
(0.0981) 		0.271
(0.596) 		0.015
(0.122)
PTPN13 25 (5%) 464 0.446
(0.773) 		0.657
(0.944) 		0.00094
(0.0235) 		0.0443
(0.224) 		0.566
(0.874) 		0.742
(1.00) 		0.0457
(0.228) 		0.00798
(0.0836) 		0.681
(0.962) 		0.272
(0.598) 		0.358
(0.687) 		0.0271
(0.167)
MRPL44 10 (2%) 479 0.0272
(0.167) 		0.0065
(0.074) 		0.00527
(0.0655) 		1
(1.00) 		0.697
(0.97) 		0.45
(0.776) 		0.17
(0.467) 		0.0519
(0.246) 		0.241
(0.564) 		0.0417
(0.215) 		0.00444
(0.061) 		1
(1.00)
SPAST 10 (2%) 479 0.0269
(0.166) 		0.00656
(0.0742) 		0.0114
(0.104) 		0.0557
(0.257) 		0.911
(1.00) 		0.0961
(0.34) 		0.805
(1.00) 		0.0836
(0.313) 		0.218
(0.532) 		0.0117
(0.106) 		0.0251
(0.16) 		0.871
(1.00)
ARAF 10 (2%) 479 0.0651
(0.276) 		0.0138
(0.115) 		0.00064
(0.0182) 		0.18
(0.48) 		0.0235
(0.156) 		0.0492
(0.237) 		0.414
(0.742) 		0.00455
(0.0614) 		0.737
(1.00) 		0.17
(0.467) 		0.394
(0.719) 		0.266
(0.591)
LRRFIP2 16 (3%) 473 0.0012
(0.0278) 		0.133
(0.407) 		0.00704
(0.0773) 		0.398
(0.724) 		0.939
(1.00) 		0.453
(0.779) 		0.291
(0.619) 		0.003
(0.049) 		0.339
(0.666) 		3e-05
(0.0022) 		0.00793
(0.0833) 		0.87
(1.00)
G3BP1 12 (2%) 477 0.00851
(0.086) 		0.00175
(0.0347) 		0.0002
(0.00826) 		0.289
(0.618) 		0.318
(0.647) 		0.583
(0.888) 		0.192
(0.495) 		0.0189
(0.137) 		0.649
(0.936) 		0.00087
(0.0223)
SMARCA1 26 (5%) 463 0.0109
(0.101) 		0.0312
(0.181) 		0.0001
(0.00522) 		0.00905
(0.089) 		0.6
(0.903) 		0.608
(0.909) 		0.555
(0.87) 		0.0134
(0.114) 		0.543
(0.863) 		0.156
(0.445) 		0.32
(0.649) 		0.79
(1.00)
TTC13 10 (2%) 479 0.0155
(0.124) 		0.0386
(0.206) 		0.00035
(0.0122) 		0.195
(0.498) 		0.17
(0.467) 		0.669
(0.953) 		0.113
(0.372) 		0.0116
(0.105) 		0.283
(0.611) 		0.0273
(0.167)
RGS3 18 (4%) 471 0.0041
(0.0584) 		0.00466
(0.0619) 		0.00022
(0.00882) 		1
(1.00) 		0.802
(1.00) 		0.395
(0.72) 		0.924
(1.00) 		0.00411
(0.0585) 		0.968
(1.00) 		0.0218
(0.149) 		0.0506
(0.242) 		0.633
(0.927)
ATP2A2 16 (3%) 473 0.00861
(0.0865) 		0.0015
(0.0317) 		0.00126
(0.0287) 		0.124
(0.391) 		0.0509
(0.243) 		0.135
(0.411) 		0.615
(0.915) 		0.00087
(0.0223) 		0.214
(0.524) 		0.00733
(0.0792)
ATR 33 (7%) 456 0.00349
(0.0537) 		0.274
(0.601) 		0.00446
(0.061) 		0.723
(0.991) 		0.315
(0.643) 		0.749
(1.00) 		0.743
(1.00) 		0.0263
(0.164) 		0.0103
(0.0971) 		0.00698
(0.0769) 		0.0945
(0.337) 		1
(1.00)
AGBL5 13 (3%) 476 0.00819
(0.0843) 		0.184
(0.485) 		0.00075
(0.0202) 		0.12
(0.386) 		0.39
(0.716) 		0.311
(0.638) 		0.0864
(0.318) 		3e-05
(0.0022) 		0.756
(1.00) 		0.0135
(0.115) 		0.0243
(0.158) 		0.673
(0.955)
NUF2 16 (3%) 473 0.00177
(0.0349) 		0.554
(0.87) 		9e-05
(0.00485) 		0.236
(0.557) 		0.607
(0.907) 		0.454
(0.78) 		0.0518
(0.246) 		0.0042
(0.0591) 		0.211
(0.52) 		0.0104
(0.0979) 		0.0137
(0.115) 		0.672
(0.955)
ZNF521 34 (7%) 455 0.104
(0.356) 		0.387
(0.714) 		0.00841
(0.0853) 		0.0209
(0.146) 		0.37
(0.7) 		0.4
(0.726) 		0.0908
(0.328) 		0.0305
(0.179) 		0.0359
(0.197) 		0.0249
(0.16) 		0.602
(0.905) 		0.268
(0.594)
CELSR1 23 (5%) 466 0.867
(1.00) 		0.0447
(0.225) 		0.00366
(0.0549) 		0.0656
(0.276) 		0.293
(0.621) 		0.708
(0.979) 		0.0728
(0.291) 		1e-05
(0.00111) 		0.298
(0.627) 		0.0382
(0.205) 		0.00401
(0.0578) 		0.293
(0.621)
KIF13A 22 (4%) 467 0.0413
(0.214) 		1
(1.00) 		0.00718
(0.0782) 		0.133
(0.407) 		0.14
(0.417) 		0.295
(0.624) 		0.00343
(0.0531) 		0.003
(0.049) 		0.0679
(0.281) 		0.0391
(0.208) 		0.357
(0.687) 		0.219
(0.532)
TRIM45 14 (3%) 475 0.0221
(0.151) 		0.00064
(0.0182) 		0.00133
(0.0296) 		0.0775
(0.3) 		0.679
(0.96) 		0.162
(0.455) 		0.0609
(0.268) 		0.00064
(0.0182) 		0.481
(0.809) 		0.00602
(0.0706)
PEX2 10 (2%) 479 0.00069
(0.0192) 		0.032
(0.183) 		0.121
(0.387) 		0.367
(0.696) 		0.00259
(0.0445) 		0.00148
(0.0315) 		0.0017
(0.0342) 		0.219
(0.532)
ATP2C2 11 (2%) 478 0.00496
(0.0637) 		0.0774
(0.3) 		0.31
(0.637) 		1
(1.00) 		0.00921
(0.0901) 		2e-05
(0.0017) 		0.227
(0.545) 		0.0696
(0.284) 		0.00081
(0.0212) 		0.00694
(0.0766)
MST1R 14 (3%) 475 0.0165
(0.127) 		0.167
(0.461) 		0.245
(0.57) 		0.105
(0.359) 		0.00147
(0.0313) 		1e-05
(0.00111) 		0.00147
(0.0313) 		0.0027
(0.0458) 		0.307
(0.637) 		0.568
(0.876)
RALGAPB 15 (3%) 474 0.00723
(0.0786) 		0.0719
(0.289) 		0.00017
(0.00754) 		0.435
(0.762) 		0.0138
(0.115) 		0.461
(0.788) 		0.374
(0.704) 		2e-05
(0.0017) 		0.855
(1.00) 		0.00068
(0.019) 		0.0952
(0.338) 		1
(1.00)
AMPD1 18 (4%) 471 0.00262
(0.0449) 		0.0479
(0.234) 		0.00028
(0.0104) 		0.00345
(0.0534) 		0.945
(1.00) 		0.415
(0.742) 		0.0391
(0.208) 		0.0573
(0.261) 		0.736
(1.00) 		0.416
(0.744) 		0.232
(0.552) 		0.685
(0.964)
MAK 12 (2%) 477 0.0152
(0.123) 		0.0395
(0.209) 		0.0002
(0.00826) 		0.234
(0.554) 		0.809
(1.00) 		1
(1.00) 		0.61
(0.911) 		0.044
(0.223) 		0.419
(0.747) 		0.00404
(0.0579) 		0.136
(0.412) 		0.563
(0.873)
PCDHGC4 15 (3%) 474 0.0121
(0.108) 		0.017
(0.13) 		0.00133
(0.0296) 		0.891
(1.00) 		0.085
(0.315) 		0.925
(1.00) 		0.461
(0.788) 		0.0201
(0.143) 		0.914
(1.00) 		0.516
(0.838) 		0.00465
(0.0619) 		1
(1.00)
OTUD4 20 (4%) 469 0.0224
(0.152) 		0.0189
(0.137) 		0.00186
(0.0359) 		0.28
(0.608) 		0.821
(1.00) 		0.16
(0.451) 		0.122
(0.388) 		0.00055
(0.0165) 		0.267
(0.593) 		0.0425
(0.218)
MYST3 27 (6%) 462 0.00719
(0.0782) 		0.00446
(0.061) 		7e-05
(0.00408) 		0.862
(1.00) 		0.506
(0.832) 		0.0826
(0.311) 		0.175
(0.474) 		0.00426
(0.0595) 		0.687
(0.965) 		0.00502
(0.0638) 		0.243
(0.567) 		0.0935
(0.335)
TAX1BP1 14 (3%) 475 0.0504
(0.241) 		1
(1.00) 		0.00033
(0.0117) 		0.0381
(0.204) 		0.245
(0.57) 		0.743
(1.00) 		0.216
(0.526) 		3e-05
(0.0022) 		0.142
(0.418) 		0.0245
(0.158) 		0.0239
(0.157) 		1
(1.00)
OR2F2 8 (2%) 481 0.756
(1.00) 		0.0278
(0.169) 		0.328
(0.656) 		0.0417
(0.215) 		0.00167
(0.0339) 		0.0955
(0.338) 		0.0155
(0.124) 		0.0306
(0.179) 		0.0651
(0.276) 		0.868
(1.00)
SLC27A3 7 (1%) 482 0.0227
(0.153) 		0.0124
(0.11) 		0.618
(0.916) 		0.682
(0.962) 		0.194
(0.497) 		0.00803
(0.0836) 		0.499
(0.825) 		0.0353
(0.194) 		0.00425
(0.0595) 		1
(1.00)
SFI1 12 (2%) 477 0.0037
(0.0553) 		0.105
(0.358) 		0.00022
(0.00882) 		0.328
(0.656) 		0.734
(1) 		1
(1.00) 		0.067
(0.278) 		0.00048
(0.0151) 		0.376
(0.706) 		0.00653
(0.0741) 		0.00429
(0.0599) 		1
(1.00)
TRAF3 12 (2%) 477 0.00691
(0.0764) 		0.00165
(0.0337) 		0.00372
(0.0555) 		0.196
(0.499) 		0.268
(0.594) 		0.528
(0.848) 		0.518
(0.84) 		0.00038
(0.0128) 		0.806
(1.00) 		0.00133
(0.0296) 		0.0833
(0.312) 		0.563
(0.873)
AFF3 25 (5%) 464 0.00985
(0.0945) 		0.00253
(0.0438) 		0.00574
(0.0687) 		0.0892
(0.325) 		0.374
(0.704) 		0.959
(1.00) 		0.208
(0.515) 		0.0337
(0.188) 		0.659
(0.945) 		0.102
(0.352) 		0.0134
(0.114) 		0.868
(1.00)
ANKRD12 26 (5%) 463 0.00202
(0.0376) 		0.279
(0.606) 		4e-05
(0.00269) 		0.0713
(0.288) 		0.668
(0.952) 		0.526
(0.847) 		0.217
(0.528) 		0.00331
(0.0517) 		0.0482
(0.234) 		0.00349
(0.0537) 		0.137
(0.413) 		0.564
(0.873)
CTNND1 20 (4%) 469 0.0628
(0.272) 		0.791
(1.00) 		3e-05
(0.0022) 		0.0539
(0.252) 		0.313
(0.64) 		0.721
(0.99) 		0.00499
(0.0638) 		2e-05
(0.0017) 		0.119
(0.384) 		0.0246
(0.159) 		0.0247
(0.159) 		0.892
(1.00)
TXNDC2 24 (5%) 465 0.694
(0.969) 		0.449
(0.776) 		0.144
(0.422) 		0.953
(1.00) 		0.00366
(0.0549) 		9e-05
(0.00485) 		0.00176
(0.0347) 		0.00509
(0.0643) 		0.097
(0.341) 		0.286
(0.614)
BCOR 30 (6%) 459 0.0384
(0.205) 		0.309
(0.637) 		0.00024
(0.00936) 		0.0615
(0.269) 		0.315
(0.643) 		0.833
(1.00) 		0.00863
(0.0866) 		0.0007
(0.0194) 		0.155
(0.442) 		0.131
(0.404) 		0.106
(0.359) 		0.684
(0.963)
STARD3NL 15 (3%) 474 0.0119
(0.107) 		0.402
(0.728) 		0.932
(1.00) 		0.191
(0.493) 		0.00386
(0.0564) 		0.0154
(0.123) 		0.00883
(0.0875) 		0.252
(0.577) 		0.931
(1.00) 		0.757
(1.00)
SELPLG 19 (4%) 470 0.632
(0.927) 		0.161
(0.453) 		0.226
(0.543) 		0.745
(1.00) 		0.0341
(0.189) 		3e-05
(0.0022) 		0.0369
(0.2) 		0.8
(1.00) 		0.0254
(0.162) 		0.852
(1.00)
CHUK 24 (5%) 465 0.0157
(0.124) 		0.555
(0.87) 		0.0311
(0.181) 		0.0209
(0.146) 		0.545
(0.864) 		0.161
(0.454) 		0.155
(0.443) 		0.00442
(0.0609) 		0.0756
(0.296) 		0.135
(0.41) 		0.629
(0.925) 		0.498
(0.824)
MGA 43 (9%) 446 0.0917
(0.33) 		0.352
(0.679) 		1e-05
(0.00111) 		0.0596
(0.267) 		0.837
(1.00) 		0.947
(1.00) 		0.00609
(0.0712) 		1e-05
(0.00111) 		0.3
(0.629) 		0.00649
(0.074) 		0.83
(1.00) 		0.381
(0.71)
TPRKB 10 (2%) 479 0.487
(0.814) 		0.369
(0.699) 		0.732
(0.998) 		0.895
(1.00) 		0.0059
(0.0697) 		0.00075
(0.0202) 		0.00225
(0.0405) 		0.0294
(0.175)
ERBB2 36 (7%) 453 0.152
(0.437) 		0.139
(0.415) 		0.181
(0.481) 		0.283
(0.611) 		0.0241
(0.157) 		0.324
(0.654) 		0.00762
(0.0815) 		0.00076
(0.0204) 		0.0873
(0.32) 		0.0063
(0.0728) 		0.508
(0.832) 		0.68
(0.961)
NR1H3 15 (3%) 474 0.308
(0.637) 		0.0607
(0.268) 		0.021
(0.146) 		1
(1.00) 		0.0779
(0.301) 		0.363
(0.692) 		0.388
(0.715) 		0.00817
(0.0842) 		0.0189
(0.137) 		0.075
(0.294) 		0.00412
(0.0586) 		0.757
(1.00)
C2ORF29 19 (4%) 470 0.796
(1.00) 		0.0448
(0.225) 		0.222
(0.537) 		0.793
(1.00) 		0.00406
(0.058) 		0.00079
(0.0209) 		6e-05
(0.00366) 		0.289
(0.617) 		0.357
(0.686) 		0.485
(0.812)
ZDHHC7 12 (2%) 477 0.00405
(0.058) 		0.0626
(0.272) 		0.0201
(0.143) 		0.143
(0.421) 		0.0329
(0.185) 		0.74
(1.00) 		0.434
(0.761) 		0.00541
(0.0664) 		0.422
(0.75) 		0.789
(1.00) 		0.0608
(0.268) 		0.449
(0.775)
CDK12 33 (7%) 456 0.281
(0.609) 		0.596
(0.899) 		0.0007
(0.0194) 		0.0918
(0.331) 		0.757
(1.00) 		1
(1.00) 		0.00374
(0.0556) 		0.00072
(0.0198) 		0.126
(0.395) 		0.04
(0.21) 		0.0581
(0.263) 		0.0921
(0.331)
GMPS 17 (3%) 472 0.00689
(0.0763) 		0.337
(0.665) 		0.0204
(0.144) 		0.399
(0.725) 		0.00796
(0.0835) 		0.77
(1.00) 		0.576
(0.882) 		0.428
(0.755) 		0.296
(0.625) 		0.436
(0.763) 		0.039
(0.208) 		0.378
(0.707)
ZNF486 13 (3%) 476 0.0641
(0.275) 		0.183
(0.484) 		0.0449
(0.225) 		0.00285
(0.0476) 		0.896
(1.00) 		0.885
(1.00) 		0.357
(0.686) 		9e-05
(0.00485) 		0.267
(0.592) 		0.0332
(0.186)
LDHA 14 (3%) 475 0.0651
(0.276) 		0.185
(0.485) 		0.467
(0.793) 		0.122
(0.388) 		0.0454
(0.227) 		0.00306
(0.0495) 		0.461
(0.788) 		0.417
(0.745) 		0.00713
(0.0779) 		0.0259
(0.163) 		0.0573
(0.261) 		0.757
(1.00)
ICAM5 15 (3%) 474 0.0101
(0.0962) 		0.0698
(0.285) 		0.939
(1.00) 		0.823
(1.00) 		0.01
(0.0956) 		0.0192
(0.139) 		0.56
(0.871) 		0.0246
(0.159) 		0.631
(0.926) 		0.312
(0.64)
RBM44 15 (3%) 474 0.00401
(0.0578) 		0.55
(0.866) 		2e-05
(0.0017) 		0.0793
(0.303) 		0.298
(0.627) 		1
(1.00) 		0.103
(0.354) 		0.036
(0.197) 		0.00558
(0.0675) 		0.161
(0.454) 		0.254
(0.577) 		1
(1.00)
TPM4 9 (2%) 480 0.016
(0.125) 		0.0395
(0.209) 		0.126
(0.395) 		1
(1.00) 		1
(1.00) 		0.862
(1.00) 		0.754
(1.00) 		0.0201
(0.143) 		0.292
(0.621) 		0.0297
(0.176)
USP24 34 (7%) 455 0.00819
(0.0843) 		0.0715
(0.289) 		0.0141
(0.117) 		0.0846
(0.314) 		0.0604
(0.268) 		0.375
(0.705) 		0.0281
(0.17) 		3e-05
(0.0022) 		0.0813
(0.308) 		0.0667
(0.278) 		0.281
(0.609) 		0.363
(0.692)
TRIP11 26 (5%) 463 0.0262
(0.164) 		0.53
(0.85) 		0.00402
(0.0578) 		0.646
(0.933) 		0.0915
(0.33) 		0.0541
(0.252) 		0.743
(1.00) 		0.00919
(0.09) 		0.278
(0.605) 		0.0476
(0.233) 		0.348
(0.676) 		0.787
(1.00)
ECM2 20 (4%) 469 0.0276
(0.168) 		0.00625
(0.0725) 		0.0234
(0.156) 		0.00628
(0.0727) 		0.679
(0.96) 		1
(1.00) 		0.456
(0.783) 		0.163
(0.457) 		0.194
(0.497) 		0.824
(1.00) 		0.873
(1.00) 		0.692
(0.969)
KRT2 15 (3%) 474 0.336
(0.664) 		0.579
(0.885) 		0.14
(0.417) 		0.461
(0.788) 		0.00652
(0.0741) 		0.00038
(0.0128) 		0.0327
(0.185) 		0.0155
(0.124) 		0.699
(0.971) 		0.375
(0.705)
HTR2A 23 (5%) 466 0.00807
(0.0838) 		1
(1.00) 		0.904
(1.00) 		1
(1.00) 		0.0796
(0.304) 		0.918
(1.00) 		0.0429
(0.219) 		0.00017
(0.00754) 		0.0105
(0.0982) 		0.141
(0.417) 		0.965
(1.00) 		0.371
(0.701)
TFE3 11 (2%) 478 0.275
(0.601) 		0.252
(0.577) 		0.00197
(0.0373) 		0.112
(0.371) 		0.319
(0.648) 		0.838
(1.00) 		0.0224
(0.152) 		0.00011
(0.00558) 		0.638
(0.927) 		0.0238
(0.157)
NCOA6 29 (6%) 460 0.025
(0.16) 		0.0623
(0.271) 		0.00247
(0.0432) 		0.244
(0.569) 		0.372
(0.702) 		0.366
(0.695) 		0.176
(0.475) 		0.0016
(0.0331) 		0.55
(0.867) 		0.034
(0.189) 		0.468
(0.795) 		0.521
(0.842)
CEP135 25 (5%) 464 0.00044
(0.0142) 		0.0481
(0.234) 		0.108
(0.364) 		0.704
(0.975) 		0.819
(1.00) 		0.919
(1.00) 		0.482
(0.81) 		0.0493
(0.238) 		0.712
(0.983) 		0.0232
(0.155) 		0.0692
(0.283) 		0.264
(0.589)
FGFR2 53 (11%) 436 0.0653
(0.276) 		0.348
(0.676) 		0.0827
(0.311) 		0.235
(0.556) 		0.164
(0.457) 		0.201
(0.506) 		2e-05
(0.0017) 		1e-05
(0.00111) 		1e-05
(0.00111) 		0.00025
(0.00959) 		0.298
(0.627) 		0.338
(0.666)
ERBB4 59 (12%) 430 0.024
(0.157) 		0.173
(0.47) 		0.0269
(0.166) 		0.541
(0.861) 		0.871
(1.00) 		0.339
(0.666) 		0.134
(0.409) 		0.0263
(0.164) 		0.191
(0.492) 		0.0195
(0.139) 		0.74
(1.00) 		0.125
(0.393)
UGT3A2 22 (4%) 467 0.0362
(0.197) 		0.879
(1.00) 		0.00108
(0.0258) 		0.181
(0.482) 		0.144
(0.423) 		0.384
(0.712) 		0.168
(0.463) 		0.00435
(0.0603) 		0.132
(0.407) 		0.147
(0.427) 		0.00056
(0.0168) 		0.461
(0.787)
MEN1 27 (6%) 462 0.324
(0.653) 		0.339
(0.666) 		0.276
(0.603) 		0.955
(1.00) 		1e-05
(0.00111) 		1e-05
(0.00111) 		0.00064
(0.0182) 		0.105
(0.358) 		0.38
(0.709) 		0.00889
(0.0879)
SLC4A10 29 (6%) 460 0.064
(0.275) 		1
(1.00) 		0.0134
(0.114) 		0.185
(0.485) 		0.965
(1.00) 		0.683
(0.963) 		0.0545
(0.254) 		0.0001
(0.00522) 		0.00921
(0.0901) 		0.00841
(0.0853) 		0.703
(0.975) 		0.359
(0.688)
KLHL10 21 (4%) 468 0.0244
(0.158) 		0.664
(0.949) 		0.143
(0.421) 		0.15
(0.434) 		0.00338
(0.0525) 		1e-05
(0.00111) 		0.0283
(0.171) 		0.109
(0.366) 		0.118
(0.383) 		0.46
(0.787)
MMP13 16 (3%) 473 0.00773
(0.0822) 		0.619
(0.918) 		0.152
(0.436) 		0.166
(0.46) 		0.291
(0.619) 		0.146
(0.426) 		0.0166
(0.128) 		0.00621
(0.0722) 		0.0558
(0.257) 		0.0124
(0.11) 		0.293
(0.621) 		0.377
(0.706)
THOC5 16 (3%) 473 0.0161
(0.126) 		0.555
(0.87) 		0.00088
(0.0225) 		0.18
(0.48) 		1
(1.00) 		0.583
(0.887) 		0.0291
(0.174) 		0.00391
(0.0569) 		0.111
(0.37) 		0.176
(0.475) 		0.346
(0.674) 		1
(1.00)
FLT3 32 (7%) 457 0.0237
(0.157) 		0.742
(1.00) 		0.25
(0.576) 		0.0843
(0.314) 		0.858
(1.00) 		0.135
(0.41) 		0.0168
(0.129) 		0.00012
(0.00589) 		0.0549
(0.255) 		0.0068
(0.0757) 		0.204
(0.511) 		0.0729
(0.291)
RNF128 15 (3%) 474 0.00017
(0.00754) 		0.0276
(0.168) 		0.482
(0.81) 		0.756
(1.00) 		0.00021
(0.00856) 		1e-05
(0.00111) 		0.638
(0.927) 		0.668
(0.952) 		0.137
(0.413) 		0.565
(0.873)
USP29 22 (4%) 467 0.00097
(0.0239) 		0.0957
(0.339) 		2e-05
(0.0017) 		0.106
(0.36) 		0.211
(0.519) 		0.891
(1.00) 		0.363
(0.692) 		0.0346
(0.192) 		0.625
(0.924) 		0.288
(0.617) 		0.00802
(0.0836) 		0.871
(1.00)
NBEA 53 (11%) 436 0.111
(0.369) 		0.827
(1.00) 		0.00167
(0.0339) 		0.0757
(0.296) 		0.11
(0.369) 		0.913
(1.00) 		0.0476
(0.233) 		0.00121
(0.0279) 		0.00351
(0.0539) 		0.0871
(0.32) 		0.674
(0.955) 		1
(1.00)
NCOA7 17 (3%) 472 0.0162
(0.126) 		0.0392
(0.208) 		0.133
(0.407) 		0.523
(0.844) 		0.392
(0.717) 		0.302
(0.631) 		0.148
(0.429) 		0.00065
(0.0183) 		0.394
(0.719) 		0.0301
(0.177) 		0.665
(0.95) 		0.577
(0.883)
DENND4A 26 (5%) 463 0.00332
(0.0518) 		0.076
(0.297) 		0.0067
(0.075) 		0.28
(0.608) 		0.403
(0.729) 		0.243
(0.568) 		0.156
(0.444) 		0.0342
(0.19) 		0.205
(0.511) 		0.0319
(0.183) 		0.629
(0.925) 		0.522
(0.843)
ALX4 12 (2%) 477 0.0158
(0.125) 		0.149
(0.432) 		0.321
(0.65) 		0.116
(0.378) 		0.00404
(0.0579) 		1e-05
(0.00111) 		0.476
(0.804) 		0.0586
(0.264) 		0.00823
(0.0845) 		0.128
(0.397)
C12ORF40 24 (5%) 465 0.0635
(0.274) 		0.182
(0.483) 		0.142
(0.419) 		0.507
(0.832) 		0.532
(0.852) 		0.827
(1.00) 		0.00053
(0.0162) 		2e-05
(0.0017) 		0.00467
(0.0619) 		0.00085
(0.0219) 		0.725
(0.992) 		0.364
(0.693)
ERCC5 23 (5%) 466 0.0217
(0.149) 		0.0462
(0.229) 		0.00076
(0.0204) 		0.0507
(0.242) 		0.489
(0.816) 		0.079
(0.302) 		0.0911
(0.329) 		3e-05
(0.0022) 		0.574
(0.881) 		0.295
(0.623) 		0.835
(1.00) 		0.398
(0.723)
TRPM7 30 (6%) 459 0.00288
(0.0479) 		0.308
(0.637) 		0.00349
(0.0537) 		0.293
(0.621) 		0.0308
(0.18) 		0.107
(0.361) 		0.189
(0.49) 		0.00528
(0.0656) 		0.365
(0.694) 		0.116
(0.379) 		0.0557
(0.257) 		0.0687
(0.282)
USP26 24 (5%) 465 0.00182
(0.0355) 		0.0631
(0.273) 		1e-05
(0.00111) 		0.079
(0.302) 		0.274
(0.6) 		0.956
(1.00) 		0.00402
(0.0578) 		2e-05
(0.0017) 		0.15
(0.433) 		0.106
(0.36) 		0.138
(0.414) 		1
(1.00)
OVCH1 26 (5%) 463 0.0262
(0.164) 		0.528
(0.848) 		0.0206
(0.145) 		0.481
(0.809) 		0.424
(0.752) 		0.32
(0.649) 		0.558
(0.87) 		0.0306
(0.179) 		0.906
(1.00) 		0.0253
(0.161) 		1
(1.00) 		0.519
(0.84)
MUC17 55 (11%) 434 0.0132
(0.113) 		0.194
(0.497) 		0.00071
(0.0196) 		0.0529
(0.249) 		0.0504
(0.241) 		0.622
(0.92) 		0.45
(0.776) 		0.00021
(0.00856) 		0.316
(0.645) 		0.0276
(0.168) 		0.583
(0.888) 		0.336
(0.664)
LIG1 20 (4%) 469 0.00143
(0.0309) 		0.557
(0.87) 		0.0191
(0.138) 		0.298
(0.627) 		0.393
(0.718) 		0.952
(1.00) 		0.0765
(0.298) 		0.0071
(0.0777) 		0.139
(0.415) 		0.0368
(0.2) 		0.317
(0.645) 		0.95
(1.00)
FGFR3 23 (5%) 466 0.0175
(0.132) 		0.244
(0.569) 		0.136
(0.412) 		0.0669
(0.278) 		0.00119
(0.0276) 		1e-05
(0.00111) 		0.00134
(0.0297) 		0.108
(0.363) 		0.265
(0.591) 		0.913
(1.00)
LHCGR 24 (5%) 465 0.374
(0.704) 		1
(1.00) 		0.0468
(0.231) 		0.199
(0.503) 		0.88
(1.00) 		0.956
(1.00) 		0.0169
(0.129) 		0.0193
(0.139) 		0.00222
(0.0401) 		0.518
(0.84) 		0.33
(0.657) 		0.548
(0.866)
TSHR 48 (10%) 441 0.114
(0.373) 		0.0708
(0.287) 		0.0422
(0.217) 		0.932
(1.00) 		0.0781
(0.301) 		0.559
(0.871) 		0.00049
(0.0153) 		1e-05
(0.00111) 		0.00382
(0.056) 		0.0624
(0.271) 		0.445
(0.771) 		0.711
(0.982)
MYO3B 34 (7%) 455 0.0659
(0.276) 		0.185
(0.485) 		0.229
(0.549) 		0.456
(0.783) 		0.31
(0.637) 		0.708
(0.979) 		0.0128
(0.111) 		0.00019
(0.00802) 		0.00484
(0.0629) 		0.0227
(0.153) 		0.154
(0.441) 		0.519
(0.84)
HEPACAM2 14 (3%) 475 0.0315
(0.182) 		0.0395
(0.209) 		0.0151
(0.122) 		0.0847
(0.315) 		0.114
(0.374) 		0.363
(0.692) 		0.114
(0.375) 		0.00032
(0.0114) 		0.125
(0.394) 		0.133
(0.407) 		0.358
(0.687) 		0.429
(0.757)
AGBL2 15 (3%) 474 0.00354
(0.0542) 		1
(1.00) 		0.0458
(0.228) 		0.12
(0.386) 		0.506
(0.832) 		0.15
(0.433) 		0.181
(0.481) 		0.0477
(0.233) 		0.0273
(0.167) 		0.84
(1.00)
DAXX 16 (3%) 473 0.404
(0.729) 		0.334
(0.662) 		0.042
(0.216) 		0.167
(0.461) 		0.0196
(0.14) 		0.00132
(0.0294) 		0.00018
(0.00778) 		0.372
(0.702) 		0.116
(0.379) 		0.382
(0.711)
TIAL1 13 (3%) 476 0.016
(0.125) 		0.0411
(0.214) 		0.0005
(0.0156) 		0.438
(0.765) 		0.927
(1.00) 		1
(1.00) 		0.277
(0.603) 		0.00114
(0.0268) 		0.482
(0.81) 		0.12
(0.386)
SMC2 29 (6%) 460 0.205
(0.511) 		0.0206
(0.145) 		0.0459
(0.228) 		0.864
(1.00) 		0.638
(0.927) 		0.429
(0.756) 		0.0117
(0.106) 		0.00015
(0.00691) 		0.0691
(0.283) 		0.288
(0.616) 		0.0963
(0.34) 		0.183
(0.484)
FBXO34 12 (2%) 477 0.0647
(0.275) 		0.35
(0.677) 		0.00212
(0.0389) 		0.437
(0.764) 		0.716
(0.986) 		0.0123
(0.109) 		0.0206
(0.145) 		0.00851
(0.086) 		0.654
(0.94) 		0.175
(0.475) 		0.0604
(0.268) 		0.449
(0.775)
BRCA1 29 (6%) 460 0.00199
(0.0373) 		0.123
(0.39) 		0.00687
(0.0762) 		0.263
(0.587) 		0.793
(1.00) 		0.635
(0.927) 		0.206
(0.513) 		0.00434
(0.0602) 		0.0747
(0.293) 		0.0195
(0.14) 		0.0561
(0.258) 		0.402
(0.727)
STAB2 36 (7%) 453 0.00058
(0.0171) 		0.00781
(0.0826) 		0.00011
(0.00558) 		0.678
(0.959) 		0.437
(0.764) 		0.936
(1.00) 		0.254
(0.577) 		0.0466
(0.23) 		0.172
(0.469) 		0.175
(0.474) 		0.329
(0.656) 		0.436
(0.763)
ADAMTS19 25 (5%) 464 0.0358
(0.196) 		0.244
(0.569) 		0.00533
(0.0659) 		0.0366
(0.199) 		0.372
(0.702) 		0.791
(1.00) 		0.0925
(0.332) 		0.00174
(0.0346) 		0.36
(0.688) 		0.436
(0.763) 		0.439
(0.766) 		0.64
(0.928)
CNTNAP5 47 (10%) 442 0.0701
(0.285) 		0.43
(0.758) 		0.0128
(0.112) 		1
(1.00) 		0.482
(0.81) 		0.682
(0.962) 		0.0271
(0.167) 		0.00024
(0.00936) 		0.0118
(0.107) 		0.425
(0.753) 		0.0685
(0.282) 		0.0762
(0.297)
TMPRSS15 26 (5%) 463 0.00041
(0.0135) 		0.048
(0.234) 		0.0338
(0.189) 		0.909
(1.00) 		0.371
(0.701) 		0.633
(0.927) 		0.427
(0.755) 		0.0888
(0.323) 		0.925
(1.00) 		0.0324
(0.184) 		0.0838
(0.313) 		0.347
(0.675)
APOB 67 (14%) 422 0.00121
(0.0279) 		0.013
(0.113) 		0.00055
(0.0165) 		0.0661
(0.277) 		0.335
(0.663) 		0.896
(1.00) 		0.0789
(0.302) 		0.00112
(0.0265) 		0.165
(0.459) 		0.0729
(0.291) 		0.722
(0.99) 		0.771
(1.00)
PLCB2 10 (2%) 479 0.0178
(0.133) 		0.0134
(0.114) 		0.625
(0.924) 		0.118
(0.382) 		0.279
(0.606) 		0.0118
(0.106) 		0.642
(0.929) 		0.00614
(0.0717) 		0.908
(1.00) 		0.517
(0.839)
PTPRD 38 (8%) 451 0.00462
(0.0617) 		0.0313
(0.182) 		0.575
(0.881) 		0.877
(1.00) 		0.134
(0.409) 		0.653
(0.94) 		0.226
(0.542) 		0.016
(0.125) 		0.0981
(0.344) 		0.00156
(0.0325) 		0.367
(0.696) 		1
(1.00)
SCN3A 49 (10%) 440 0.00055
(0.0165) 		0.00083
(0.0215) 		0.00089
(0.0226) 		0.75
(1.00) 		0.558
(0.87) 		0.287
(0.616) 		0.15
(0.434) 		0.0204
(0.144) 		0.196
(0.498) 		0.113
(0.373) 		1
(1.00) 		0.467
(0.794)
ERCC6 33 (7%) 456 0.0474
(0.232) 		0.0966
(0.341) 		0.00311
(0.0499) 		0.389
(0.716) 		0.315
(0.642) 		0.316
(0.645) 		0.263
(0.588) 		0.00098
(0.0241) 		0.508
(0.832) 		0.0323
(0.184) 		0.942
(1.00) 		0.195
(0.498)
CUL2 15 (3%) 474 0.00402
(0.0578) 		0.253
(0.577) 		0.0118
(0.107) 		0.368
(0.697) 		0.0736
(0.292) 		0.0809
(0.307) 		0.635
(0.927) 		0.00192
(0.0366) 		0.38
(0.709) 		0.0538
(0.252) 		0.00429
(0.0599) 		0.446
(0.773)
SCLT1 19 (4%) 470 0.00551
(0.0671) 		0.0729
(0.291) 		0.0155
(0.124) 		0.247
(0.573) 		0.249
(0.575) 		0.522
(0.843) 		0.199
(0.503) 		0.00054
(0.0164) 		0.261
(0.586) 		0.0457
(0.228) 		0.231
(0.551) 		0.284
(0.612)
ZFC3H1 21 (4%) 468 0.283
(0.611) 		0.31
(0.637) 		8e-05
(0.00452) 		0.105
(0.359) 		0.679
(0.96) 		1
(1.00) 		0.098
(0.343) 		0.00624
(0.0724) 		0.412
(0.739) 		0.0015
(0.0317) 		0.0138
(0.115) 		0.869
(1.00)
RNF145 17 (3%) 472 0.0307
(0.18) 		0.0318
(0.183) 		0.49
(0.816) 		0.521
(0.843) 		0.0482
(0.234) 		0.00319
(0.0507) 		0.371
(0.701) 		0.173
(0.47) 		0.129
(0.4) 		0.912
(1.00)
GGTLC2 7 (1%) 482 0.718
(0.987) 		0.0263
(0.164) 		0.239
(0.562) 		0.577
(0.884) 		0.00516
(0.0647) 		0.00649
(0.074) 		0.351
(0.678) 		0.014
(0.116)
IFITM3 8 (2%) 481 0.757
(1.00) 		0.283
(0.611) 		0.142
(0.419) 		0.188
(0.488) 		0.0324
(0.184) 		0.0382
(0.205) 		0.00936
(0.0911) 		0.0272
(0.167)
SMG1 27 (6%) 462 0.00138
(0.0303) 		0.104
(0.357) 		0.00559
(0.0675) 		0.0207
(0.145) 		0.495
(0.822) 		0.229
(0.549) 		0.531
(0.851) 		0.00382
(0.056) 		0.542
(0.862) 		0.067
(0.278) 		0.118
(0.383) 		0.726
(0.994)
N4BP2 27 (6%) 462 0.0545
(0.253) 		0.546
(0.865) 		0.00014
(0.0066) 		0.212
(0.52) 		0.0362
(0.197) 		0.235
(0.555) 		0.379
(0.709) 		0.00851
(0.086) 		0.391
(0.716) 		0.253
(0.577) 		0.0115
(0.105) 		0.95
(1.00)
GTF2IRD2 6 (1%) 483 0.527
(0.847) 		1
(1.00) 		0.00477
(0.0623) 		0.0412
(0.214) 		0.045
(0.225) 		0.0114
(0.104) 		0.18
(0.48) 		0.409
(0.734)
SPCS2 5 (1%) 484 1
(1.00) 		0.04
(0.21) 		0.298
(0.627) 		0.0287
(0.172) 		0.0721
(0.289) 		0.0786
(0.302) 		0.0314
(0.182) 		0.00237
(0.0418)
RAD51AP2 19 (4%) 470 0.00375
(0.0556) 		0.545
(0.865) 		2e-05
(0.0017) 		0.0108
(0.1) 		0.109
(0.365) 		0.768
(1.00) 		0.0567
(0.259) 		0.00297
(0.0488) 		0.919
(1.00) 		0.452
(0.778) 		0.462
(0.788) 		1
(1.00)
BMPR1A 18 (4%) 471 0.0267
(0.166) 		0.00665
(0.0747) 		0.00052
(0.0161) 		0.0613
(0.269) 		0.301
(0.63) 		0.17
(0.466) 		0.735
(1.00) 		0.0173
(0.131) 		0.749
(1.00) 		0.162
(0.455) 		0.593
(0.897) 		0.767
(1.00)
MAP9 18 (4%) 471 0.231
(0.551) 		0.183
(0.484) 		0.0473
(0.232) 		0.476
(0.804) 		0.298
(0.627) 		0.391
(0.716) 		0.066
(0.276) 		0.00469
(0.0619) 		0.00276
(0.0464) 		0.0943
(0.337) 		0.0445
(0.224) 		0.522
(0.844)
ACVR2A 18 (4%) 471 0.106
(0.36) 		0.657
(0.943) 		0.0136
(0.115) 		0.0188
(0.137) 		0.163
(0.456) 		0.0467
(0.23) 		0.187
(0.488) 		0.174
(0.473) 		0.804
(1.00) 		0.271
(0.596) 		0.0243
(0.158) 		0.577
(0.883)
RNF20 21 (4%) 468 0.114
(0.374) 		0.575
(0.882) 		0.00384
(0.0562) 		0.104
(0.357) 		0.0453
(0.226) 		0.751
(1.00) 		0.0169
(0.129) 		0.00095
(0.0235) 		0.431
(0.759) 		0.118
(0.383) 		0.305
(0.635) 		0.567
(0.875)
SCN2A 50 (10%) 439 0.0069
(0.0763) 		0.00547
(0.0668) 		0.00268
(0.0455) 		0.762
(1.00) 		0.637
(0.927) 		0.419
(0.747) 		0.257
(0.58) 		0.00198
(0.0373) 		0.0996
(0.347) 		0.106
(0.36) 		0.602
(0.905) 		0.787
(1.00)
ABCB4 27 (6%) 462 0.00038
(0.0128) 		0.251
(0.577) 		5e-05
(0.00318) 		0.378
(0.707) 		0.17
(0.467) 		0.3
(0.629) 		0.221
(0.535) 		0.00354
(0.0542) 		0.472
(0.8) 		0.0855
(0.316) 		0.0153
(0.123) 		0.395
(0.72)
ZNF14 14 (3%) 475 0.0162
(0.126) 		1
(1.00) 		0.00104
(0.0252) 		0.476
(0.805) 		0.423
(0.75) 		1
(1.00) 		0.516
(0.838) 		0.204
(0.51) 		0.026
(0.164) 		0.00835
(0.0851) 		0.491
(0.818) 		0.638
(0.927)
SEC31A 15 (3%) 474 0.275
(0.601) 		0.183
(0.484) 		0.0467
(0.23) 		0.203
(0.509) 		0.284
(0.612) 		0.8
(1.00) 		0.0373
(0.202) 		0.00209
(0.0385) 		0.541
(0.861) 		0.0677
(0.28) 		0.0125
(0.11) 		0.083
(0.312)
KIAA0319L 20 (4%) 469 0.134
(0.41) 		0.0718
(0.289) 		0.00031
(0.0112) 		0.103
(0.356) 		0.255
(0.577) 		0.278
(0.605) 		0.189
(0.49) 		0.00235
(0.0416) 		0.188
(0.489) 		0.015
(0.122) 		0.025
(0.16) 		0.671
(0.954)
PAXIP1 20 (4%) 469 0.032
(0.183) 		0.00293
(0.0484) 		0.0131
(0.113) 		0.684
(0.963) 		0.111
(0.37) 		0.732
(0.999) 		0.097
(0.341) 		0.0008
(0.021) 		0.114
(0.375) 		0.143
(0.42) 		0.189
(0.49) 		0.574
(0.881)
TAOK3 20 (4%) 469 0.0261
(0.164) 		0.0885
(0.323) 		0.00083
(0.0215) 		0.192
(0.495) 		0.39
(0.716) 		0.785
(1.00) 		0.239
(0.563) 		0.00012
(0.00589) 		0.0498
(0.239) 		0.0543
(0.253)
C7ORF58 26 (5%) 463 0.00381
(0.056) 		0.104
(0.357) 		0.0312
(0.181) 		0.07
(0.285) 		0.176
(0.475) 		0.73
(0.997) 		0.549
(0.866) 		0.00271
(0.0458) 		0.149
(0.432) 		0.00631
(0.0729) 		0.115
(0.376) 		0.731
(0.998)
ATP11C 29 (6%) 460 0.375
(0.705) 		0.377
(0.706) 		0.0105
(0.0984) 		0.107
(0.361) 		0.0226
(0.152) 		0.221
(0.535) 		0.0224
(0.152) 		0.00792
(0.0833) 		0.0777
(0.3) 		0.394
(0.719) 		0.662
(0.948) 		0.834
(1.00)
RBM19 21 (4%) 468 0.00752
(0.0807) 		0.00019
(0.00802) 		0.0565
(0.259) 		0.946
(1.00) 		0.00623
(0.0724) 		0.261
(0.584) 		0.504
(0.831) 		0.00115
(0.0269) 		0.43
(0.758) 		0.235
(0.555) 		0.0797
(0.304) 		0.269
(0.594)
YLPM1 24 (5%) 465 0.067
(0.278) 		0.42
(0.748) 		1e-05
(0.00111) 		0.0128
(0.111) 		0.642
(0.928) 		0.856
(1.00) 		0.0048
(0.0627) 		3e-05
(0.0022) 		0.0544
(0.253) 		0.0628
(0.272) 		0.136
(0.411) 		1
(1.00)
ANKHD1 34 (7%) 455 0.0491
(0.237) 		0.69
(0.967) 		0.00061
(0.0178) 		0.253
(0.577) 		0.298
(0.627) 		0.693
(0.969) 		0.185
(0.485) 		0.00086
(0.0222) 		0.289
(0.617) 		0.231
(0.551) 		0.00498
(0.0638) 		0.896
(1.00)
GPR22 9 (2%) 480 0.0121
(0.108) 		0.204
(0.511) 		0.0065
(0.074) 		0.0488
(0.236) 		0.0592
(0.266) 		0.0207
(0.145) 		0.568
(0.875) 		0.0687
(0.282)
EEF1D 12 (2%) 477 0.0208
(0.146) 		0.238
(0.561) 		0.487
(0.814) 		0.368
(0.697) 		0.00077
(0.0205) 		3e-05
(0.0022) 		0.097
(0.341) 		0.0158
(0.125) 		0.303
(0.633) 		1
(1.00)
EXOC4 20 (4%) 469 0.132
(0.406) 		0.0454
(0.227) 		0.00848
(0.0858) 		0.0773
(0.3) 		0.641
(0.928) 		0.349
(0.677) 		0.00919
(0.09) 		0.00037
(0.0126) 		0.323
(0.652) 		0.107
(0.361) 		0.355
(0.684) 		1
(1.00)
IKZF4 13 (3%) 476 0.321
(0.65) 		1
(1.00) 		0.869
(1.00) 		0.636
(0.927) 		0.0216
(0.149) 		0.00098
(0.0241) 		0.0103
(0.0968) 		0.0365
(0.199) 		0.909
(1.00) 		0.886
(1.00)
RHPN2 18 (4%) 471 0.0229
(0.153) 		0.637
(0.927) 		0.159
(0.45) 		0.676
(0.957) 		0.46
(0.787) 		0.75
(1.00) 		0.531
(0.851) 		0.0473
(0.232) 		0.0132
(0.113) 		0.0096
(0.0929)
PAK7 26 (5%) 463 0.0297
(0.176) 		0.58
(0.885) 		0.00448
(0.061) 		0.631
(0.926) 		0.343
(0.67) 		0.204
(0.511) 		0.104
(0.357) 		0.0474
(0.233) 		0.0406
(0.212) 		0.147
(0.428) 		0.352
(0.68) 		0.433
(0.76)
WNK3 32 (7%) 457 0.125
(0.392) 		0.557
(0.87) 		0.0493
(0.238) 		0.0317
(0.182) 		0.493
(0.819) 		1
(1.00) 		0.404
(0.73) 		0.114
(0.374) 		0.048
(0.234) 		0.0127
(0.111) 		0.0964
(0.34) 		1
(1.00)
C1ORF168 16 (3%) 473 0.0224
(0.152) 		0.253
(0.577) 		0.0157
(0.124) 		0.739
(1.00) 		0.48
(0.808) 		0.933
(1.00) 		0.179
(0.479) 		0.0877
(0.321) 		0.752
(1.00) 		0.00789
(0.0831) 		0.00818
(0.0843) 		0.871
(1.00)
SV2A 23 (5%) 466 0.41
(0.737) 		0.335
(0.663) 		0.0189
(0.137) 		0.0176
(0.133) 		0.0448
(0.225) 		0.874
(1.00) 		0.319
(0.648) 		0.0175
(0.132) 		0.656
(0.943) 		0.107
(0.361) 		1
(1.00) 		0.671
(0.955)
RAB40C 8 (2%) 481 0.00991
(0.0949) 		0.202
(0.508) 		0.733
(0.999) 		1
(1.00) 		0.0198
(0.141) 		5e-05
(0.00318) 		0.846
(1.00) 		0.00909
(0.0893)
FOXN3 11 (2%) 478 0.0638
(0.274) 		0.013
(0.112) 		0.0329
(0.185) 		0.115
(0.376) 		0.0861
(0.317) 		0.239
(0.562) 		0.333
(0.66) 		0.0303
(0.178) 		0.426
(0.753) 		0.00376
(0.0557)
IL2RG 8 (2%) 481 0.00448
(0.061) 		0.142
(0.419) 		0.222
(0.537) 		0.0689
(0.283) 		0.00095
(0.0235) 		5e-05
(0.00318) 		0.33
(0.657) 		0.115
(0.375) 		0.025
(0.16) 		0.671
(0.954)
C14ORF102 19 (4%) 470 0.0013
(0.0292) 		0.304
(0.634) 		0.00016
(0.00722) 		0.935
(1.00) 		1
(1.00) 		0.75
(1.00) 		0.908
(1.00) 		0.00518
(0.0648) 		0.197
(0.5) 		0.00196
(0.0371) 		0.0838
(0.314) 		0.311
(0.638)
PTPRN 17 (3%) 472 0.12
(0.386) 		0.253
(0.577) 		0.00017
(0.00754) 		0.195
(0.498) 		0.181
(0.481) 		0.0281
(0.17) 		0.261
(0.585) 		0.0362
(0.198) 		0.984
(1.00) 		0.0203
(0.144) 		0.0945
(0.337) 		0.871
(1.00)
MCCC1 19 (4%) 470 0.00391
(0.0569) 		0.105
(0.359) 		0.0152
(0.123) 		0.18
(0.481) 		0.0763
(0.297) 		0.196
(0.499) 		0.102
(0.353) 		0.00034
(0.012) 		0.548
(0.866) 		0.00134
(0.0297)
FAM189B 13 (3%) 476 0.118
(0.383) 		0.0134
(0.114) 		0.0107
(0.0993) 		0.257
(0.58) 		0.797
(1.00) 		0.283
(0.611) 		0.127
(0.396) 		9e-05
(0.00485) 		0.456
(0.783) 		0.0155
(0.124) 		0.872
(1.00) 		1
(1.00)
SFRS18 13 (3%) 476 0.0261
(0.164) 		0.739
(1.00) 		3e-05
(0.0022) 		0.0705
(0.287) 		0.204
(0.511) 		0.299
(0.629) 		0.0839
(0.314) 		0.0132
(0.113) 		0.498
(0.824) 		0.0608
(0.268) 		0.00449
(0.0611) 		0.448
(0.775)
CRYGA 5 (1%) 484 0.043
(0.219) 		0.0127
(0.111) 		0.14
(0.416) 		0.718
(0.987) 		0.00053
(0.0162) 		0.00044
(0.0142) 		0.684
(0.963) 		0.325
(0.654)
NCAPD3 26 (5%) 463 0.00673
(0.0751) 		0.0726
(0.29) 		0.00776
(0.0824) 		0.215
(0.525) 		0.801
(1.00) 		0.466
(0.793) 		0.265
(0.591) 		0.0046
(0.0616) 		0.0217
(0.149) 		0.747
(1.00) 		0.0748
(0.294) 		0.922
(1.00)
MTTP 28 (6%) 461 0.1
(0.348) 		0.0972
(0.342) 		0.00435
(0.0603) 		0.786
(1.00) 		0.0255
(0.162) 		0.0628
(0.272) 		0.575
(0.881) 		0.0272
(0.167) 		0.698
(0.971) 		0.00265
(0.0453) 		0.374
(0.704) 		0.772
(1.00)
HEPH 19 (4%) 470 0.00802
(0.0836) 		0.351
(0.678) 		0.356
(0.685) 		0.101
(0.35) 		0.394
(0.719) 		0.508
(0.832) 		0.0157
(0.124) 		0.00367
(0.055) 		0.00392
(0.0569) 		0.504
(0.831) 		1
(1.00) 		0.252
(0.577)
MAP2 43 (9%) 446 0.0064
(0.0735) 		0.0355
(0.195) 		3e-05
(0.0022) 		0.282
(0.61) 		0.162
(0.455) 		0.203
(0.51) 		0.169
(0.465) 		0.00573
(0.0686) 		0.707
(0.978) 		0.517
(0.839) 		0.33
(0.657) 		0.619
(0.917)
EIF4G2 15 (3%) 474 0.00702
(0.0772) 		0.0228
(0.153) 		0.0284
(0.171) 		0.584
(0.888) 		0.0416
(0.215) 		0.801
(1.00) 		1
(1.00) 		0.143
(0.422) 		0.684
(0.963) 		0.473
(0.801) 		0.872
(1.00) 		0.842
(1.00)
TMEM45A 4 (1%) 485 0.539
(0.86) 		0.0376
(0.203) 		1
(1.00) 		0.673
(0.955) 		0.038
(0.204) 		0.0469
(0.231) 		0.108
(0.363) 		0.914
(1.00) 		0.00462
(0.0617) 		1
(1.00)
NRK 29 (6%) 460 0.0123
(0.109) 		0.375
(0.705) 		0.0301
(0.177) 		0.201
(0.506) 		0.121
(0.387) 		0.955
(1.00) 		0.419
(0.747) 		0.0015
(0.0317) 		0.0901
(0.327) 		0.0441
(0.223) 		0.66
(0.946) 		0.852
(1.00)
NLK 11 (2%) 478 0.386
(0.713) 		0.367
(0.697) 		0.0326
(0.185) 		0.188
(0.488) 		0.0106
(0.0987) 		0.0102
(0.0968) 		0.0014
(0.0305) 		0.547
(0.865)
GUCY1A3 26 (5%) 463 0.186
(0.486) 		0.046
(0.229) 		0.00636
(0.0732) 		0.658
(0.945) 		0.354
(0.682) 		0.14
(0.416) 		0.286
(0.615) 		0.0207
(0.145) 		0.68
(0.961) 		0.011
(0.101) 		0.353
(0.681) 		0.732
(0.998)
MCF2L2 23 (5%) 466 0.387
(0.714) 		1
(1.00) 		0.00019
(0.00802) 		0.00548
(0.0668) 		0.0448
(0.225) 		0.469
(0.796) 		0.25
(0.577) 		0.0523
(0.247) 		0.587
(0.892) 		0.198
(0.501) 		0.0245
(0.158) 		0.87
(1.00)
ZKSCAN1 8 (2%) 481 0.0234
(0.156) 		0.0064
(0.0735) 		0.00501
(0.0638) 		0.11
(0.369) 		0.0511
(0.243) 		0.0665
(0.277) 		0.347
(0.675) 		0.213
(0.522) 		0.283
(0.611) 		0.0291
(0.174)
ATP12A 30 (6%) 459 0.0201
(0.143) 		0.0703
(0.286) 		0.00801
(0.0836) 		1
(1.00) 		0.704
(0.976) 		0.884
(1.00) 		0.938
(1.00) 		0.00025
(0.00959) 		0.673
(0.955) 		0.00558
(0.0675) 		0.23
(0.55) 		0.684
(0.963)
C12ORF10 4 (1%) 485 0.534
(0.854) 		0.0371
(0.201) 		0.455
(0.781) 		0.299
(0.628) 		0.0162
(0.127) 		0.0087
(0.0868) 		0.0282
(0.171) 		0.338
(0.666)
WT1 30 (6%) 459 0.167
(0.461) 		0.255
(0.578) 		0.138
(0.414) 		0.726
(0.993) 		0.171
(0.468) 		0.609
(0.91) 		0.0187
(0.137) 		0.00107
(0.0257) 		0.00776
(0.0824) 		0.0328
(0.185) 		0.335
(0.663) 		0.683
(0.963)
HCRTR2 7 (1%) 482 0.12
(0.386) 		0.184
(0.484) 		0.791
(1.00) 		0.0379
(0.203) 		0.16
(0.452) 		1
(1.00) 		0.0119
(0.107) 		0.0464
(0.229) 		0.502
(0.829) 		0.0135
(0.115)
KIAA0195 18 (4%) 471 0.91
(1.00) 		0.834
(1.00) 		0.00091
(0.0229) 		0.106
(0.359) 		0.0212
(0.147) 		0.0132
(0.113) 		0.0669
(0.278) 		1e-05
(0.00111) 		0.11
(0.368) 		0.146
(0.427) 		0.0801
(0.305) 		0.758
(1.00)
FAM20B 10 (2%) 479 0.0302
(0.178) 		0.0203
(0.144) 		0.278
(0.605) 		0.723
(0.991) 		0.824
(1.00) 		0.0198
(0.141) 		0.083
(0.312) 		0.395
(0.72) 		0.0241
(0.157) 		0.672
(0.955)
ACTL6A 7 (1%) 482 0.0272
(0.167) 		0.00631
(0.0729) 		0.022
(0.151) 		0.142
(0.419) 		0.486
(0.814) 		0.144
(0.423) 		0.0585
(0.264) 		0.783
(1.00) 		0.049
(0.236)
MED12L 31 (6%) 458 0.0243
(0.158) 		0.0272
(0.167) 		0.00102
(0.0248) 		0.0305
(0.179) 		0.266
(0.591) 		0.549
(0.866) 		0.101
(0.351) 		0.267
(0.593) 		0.0742
(0.292) 		0.929
(1.00) 		0.0645
(0.275) 		1
(1.00)
STK36 18 (4%) 471 0.273
(0.599) 		0.255
(0.577) 		0.027
(0.166) 		0.172
(0.469) 		0.0396
(0.209) 		0.233
(0.554) 		0.0249
(0.16) 		0.058
(0.263) 		0.00694
(0.0766) 		0.394
(0.719) 		0.138
(0.414) 		0.133
(0.408)
GPR141 11 (2%) 478 0.018
(0.134) 		0.0131
(0.113) 		0.166
(0.461) 		0.603
(0.905) 		0.0469
(0.231) 		0.186
(0.486) 		0.335
(0.663) 		0.0179
(0.134) 		0.277
(0.603) 		0.057
(0.26) 		0.0605
(0.268) 		1
(1.00)
MATN3 6 (1%) 483 0.0313
(0.182) 		0.00309
(0.0498) 		0.0219
(0.15) 		0.332
(0.66) 		1
(1.00) 		0.48
(0.808) 		0.03
(0.177) 		0.932
(1.00) 		0.284
(0.613)
CHRM2 26 (5%) 463 0.135
(0.411) 		0.311
(0.638) 		0.00022
(0.00882) 		0.0626
(0.271) 		0.546
(0.865) 		0.0426
(0.218) 		0.0171
(0.13) 		0.619
(0.917) 		0.0809
(0.307) 		0.0193
(0.139) 		0.668
(0.952) 		0.191
(0.493)
CEP290 31 (6%) 458 0.00083
(0.0215) 		0.00327
(0.0514) 		0.00024
(0.00936) 		0.125
(0.393) 		0.133
(0.407) 		0.672
(0.955) 		0.0847
(0.315) 		0.0661
(0.277) 		0.716
(0.986) 		0.0477
(0.233) 		0.708
(0.979) 		0.606
(0.906)
GPR126 19 (4%) 470 0.0384
(0.205) 		0.151
(0.436) 		7e-05
(0.00408) 		0.0545
(0.254) 		0.772
(1.00) 		0.0128
(0.111) 		0.0167
(0.128) 		0.305
(0.635) 		0.513
(0.835) 		0.111
(0.369)
MC3R 14 (3%) 475 0.554
(0.87) 		0.123
(0.39) 		0.321
(0.65) 		0.157
(0.447) 		0.015
(0.122) 		0.0146
(0.12) 		0.02
(0.142) 		0.00311
(0.0499) 		0.59
(0.895) 		0.697
(0.97)
CPS1 34 (7%) 455 0.0206
(0.145) 		0.385
(0.712) 		0.0452
(0.226) 		0.644
(0.93) 		0.00753
(0.0807) 		0.67
(0.954) 		0.318
(0.647) 		0.0152
(0.123) 		0.51
(0.832) 		0.09
(0.326) 		0.0906
(0.328) 		0.922
(1.00)
SBNO1 18 (4%) 471 0.0367
(0.2) 		0.88
(1.00) 		0.0461
(0.229) 		0.0991
(0.346) 		0.144
(0.423) 		0.591
(0.896) 		0.36
(0.688) 		0.00543
(0.0666) 		0.724
(0.992) 		0.0159
(0.125) 		0.073
(0.291) 		0.575
(0.881)
FLT1 35 (7%) 454 0.00239
(0.042) 		0.00896
(0.0884) 		0.0351
(0.194) 		0.962
(1.00) 		0.208
(0.515) 		0.896
(1.00) 		0.548
(0.866) 		0.0159
(0.125) 		0.895
(1.00) 		0.21
(0.518) 		0.595
(0.898) 		0.182
(0.483)
OR6K2 16 (3%) 473 0.111
(0.37) 		0.0577
(0.262) 		3e-05
(0.0022) 		0.039
(0.208) 		0.0561
(0.258) 		0.573
(0.88) 		0.00213
(0.039) 		0.00201
(0.0376) 		0.646
(0.932) 		0.501
(0.828)
FGD3 14 (3%) 475 0.0173
(0.131) 		0.186
(0.487) 		0.00546
(0.0668) 		0.00673
(0.0751) 		0.0785
(0.302) 		0.132
(0.406) 		0.0736
(0.292) 		0.00024
(0.00936) 		0.0782
(0.301) 		0.0672
(0.279) 		0.392
(0.717) 		0.573
(0.88)
VPS13C 28 (6%) 461 0.0044
(0.0608) 		0.385
(0.713) 		0.00045
(0.0144) 		0.104
(0.357) 		0.792
(1.00) 		0.636
(0.927) 		0.139
(0.415) 		0.0477
(0.233) 		0.0646
(0.275) 		0.0263
(0.164) 		0.555
(0.87) 		0.38
(0.709)
BRSK1 18 (4%) 471 0.0175
(0.132) 		0.00011
(0.00558) 		0.00715
(0.078) 		0.236
(0.557) 		0.819
(1.00) 		0.189
(0.49) 		0.265
(0.591) 		0.0935
(0.335) 		0.182
(0.483) 		0.00049
(0.0153) 		0.136
(0.412) 		0.694
(0.969)
HLA-B 12 (2%) 477 0.00014
(0.0066) 		0.147
(0.429) 		0.183
(0.484) 		0.195
(0.498) 		0.00401
(0.0578) 		0.0006
(0.0175) 		0.244
(0.569) 		0.00266
(0.0455)
VASH1 5 (1%) 484 0.0436
(0.221) 		0.0128
(0.111) 		0.637
(0.927) 		0.718
(0.987) 		0.0201
(0.143) 		2e-05
(0.0017) 		0.127
(0.396) 		0.213
(0.522)
LIX1 11 (2%) 478 0.016
(0.125) 		0.553
(0.87) 		0.00249
(0.0434) 		0.713
(0.983) 		0.716
(0.986) 		0.841
(1.00) 		0.506
(0.832) 		0.0342
(0.19) 		0.635
(0.927) 		0.0411
(0.214)
KTN1 20 (4%) 469 0.0705
(0.286) 		0.00515
(0.0647) 		0.00017
(0.00754) 		0.755
(1.00) 		0.316
(0.645) 		0.455
(0.782) 		0.604
(0.905) 		0.00035
(0.0122) 		0.221
(0.535) 		0.00189
(0.0361)
LRRN3 23 (5%) 466 0.0186
(0.136) 		0.00108
(0.0258) 		0.0193
(0.139) 		0.827
(1.00) 		0.783
(1.00) 		0.741
(1.00) 		0.344
(0.671) 		0.0239
(0.157) 		0.49
(0.816) 		0.329
(0.656) 		0.136
(0.412) 		0.841
(1.00)
PTCH2 19 (4%) 470 0.167
(0.461) 		0.0185
(0.136) 		0.0204
(0.144) 		0.297
(0.626) 		0.184
(0.485) 		1
(1.00) 		0.556
(0.87) 		0.00518
(0.0648) 		0.495
(0.822) 		0.244
(0.569) 		0.0242
(0.158) 		0.485
(0.813)
MUC7 11 (2%) 478 0.284
(0.611) 		0.296
(0.626) 		0.461
(0.788) 		0.0126
(0.11) 		0.0411
(0.214) 		0.0135
(0.114) 		0.171
(0.468) 		0.43
(0.758) 		0.0257
(0.162) 		0.682
(0.962)
ANKRD26 23 (5%) 466 0.00896
(0.0884) 		0.0722
(0.29) 		0.031
(0.181) 		0.0759
(0.296) 		0.483
(0.81) 		1
(1.00) 		0.0114
(0.104) 		0.00265
(0.0453) 		0.831
(1.00) 		0.112
(0.371) 		0.866
(1.00) 		0.19
(0.491)
TDRD7 16 (3%) 473 0.00355
(0.0542) 		0.638
(0.927) 		0.0131
(0.113) 		0.74
(1.00) 		0.486
(0.814) 		0.31
(0.638) 		0.317
(0.645) 		0.0279
(0.17) 		0.341
(0.668) 		0.00268
(0.0455)
SERPINA9 11 (2%) 478 0.0494
(0.238) 		0.558
(0.87) 		0.693
(0.969) 		0.667
(0.951) 		0.047
(0.231) 		0.0008
(0.021) 		0.0093
(0.0906) 		0.115
(0.376) 		0.357
(0.686) 		0.869
(1.00)
SATB1 17 (3%) 472 0.628
(0.925) 		1
(1.00) 		0.189
(0.49) 		0.655
(0.942) 		0.0155
(0.124) 		0.0873
(0.32) 		0.0866
(0.318) 		0.00011
(0.00558) 		0.0378
(0.203) 		0.0658
(0.276) 		0.00074
(0.0201) 		0.671
(0.954)
CYP7B1 21 (4%) 468 0.0224
(0.152) 		0.253
(0.577) 		0.0128
(0.112) 		0.0435
(0.221) 		0.139
(0.415) 		0.317
(0.645) 		0.0657
(0.276) 		0.00672
(0.0751) 		0.235
(0.556) 		0.447
(0.773) 		0.301
(0.63) 		1
(1.00)
PHF21A 12 (2%) 477 0.0264
(0.164) 		0.00615
(0.0718) 		0.00113
(0.0266) 		0.71
(0.981) 		0.193
(0.497) 		0.742
(1.00) 		0.145
(0.424) 		0.0187
(0.136) 		0.281
(0.609) 		0.108
(0.364)
DDX17 8 (2%) 481 0.065
(0.276) 		0.0135
(0.114) 		0.0244
(0.158) 		0.196
(0.498) 		0.902
(1.00) 		0.64
(0.927) 		0.29
(0.619) 		0.00186
(0.0359) 		0.829
(1.00) 		0.264
(0.589) 		0.0241
(0.157) 		0.67
(0.954)
LBP 8 (2%) 481 0.172
(0.469) 		0.568
(0.876) 		0.0287
(0.172) 		0.0405
(0.212) 		0.0316
(0.182) 		0.054
(0.252) 		0.0294
(0.175) 		0.318
(0.646) 		0.628
(0.925) 		1
(1.00)
HCLS1 16 (3%) 473 0.00997
(0.0953) 		0.134
(0.409) 		0.00067
(0.0187) 		0.494
(0.82) 		0.932
(1.00) 		0.638
(0.927) 		0.377
(0.706) 		0.0414
(0.214) 		0.428
(0.755) 		0.00447
(0.061)
MTOR 38 (8%) 451 0.0277
(0.168) 		0.101
(0.351) 		0.00145
(0.0311) 		0.15
(0.433) 		0.706
(0.978) 		0.863
(1.00) 		0.147
(0.429) 		0.00077
(0.0205) 		0.362
(0.691) 		0.108
(0.364) 		0.00706
(0.0774) 		1
(1.00)
ATRNL1 27 (6%) 462 0.112
(0.371) 		0.31
(0.637) 		0.00075
(0.0202) 		0.726
(0.993) 		0.0418
(0.215) 		0.0418
(0.216) 		0.57
(0.876) 		0.0146
(0.12) 		0.156
(0.445) 		0.165
(0.459) 		0.231
(0.551) 		0.92
(1.00)
IRS4 31 (6%) 458 0.153
(0.44) 		0.0171
(0.13) 		0.0145
(0.119) 		0.168
(0.463) 		0.277
(0.604) 		0.354
(0.682) 		0.204
(0.511) 		0.00052
(0.0161) 		0.139
(0.415) 		0.00384
(0.0562) 		0.0572
(0.261) 		0.195
(0.498)
CEL 9 (2%) 480 0.00493
(0.0634) 		0.067
(0.278) 		0.66
(0.946) 		0.812
(1.00) 		0.00803
(0.0836) 		1e-05
(0.00111) 		0.0819
(0.31) 		0.132
(0.406) 		0.00371
(0.0554) 		0.576
(0.882)
ZHX2 20 (4%) 469 0.147
(0.429) 		0.376
(0.706) 		0.00148
(0.0315) 		0.0718
(0.289) 		0.393
(0.718) 		0.783
(1.00) 		0.0295
(0.176) 		0.00181
(0.0353) 		0.0743
(0.293) 		0.00336
(0.0524)
STAT3 9 (2%) 480 0.247
(0.572) 		0.604
(0.905) 		0.904
(1.00) 		0.566
(0.874) 		0.039
(0.208) 		0.00493
(0.0634) 		0.0195
(0.139) 		0.743
(1.00) 		7e-05
(0.00408) 		0.759
(1.00)
ATP13A5 27 (6%) 462 0.206
(0.513) 		1
(1.00) 		0.00505
(0.064) 		0.00317
(0.0505) 		0.297
(0.626) 		0.382
(0.711) 		0.014
(0.117) 		0.104
(0.356) 		0.328
(0.656) 		0.409
(0.735) 		0.0332
(0.186) 		0.22
(0.535)
INPPL1 14 (3%) 475 0.0852
(0.316) 		0.0393
(0.209) 		0.225
(0.542) 		0.309
(0.637) 		0.045
(0.225) 		0.312
(0.639) 		0.362
(0.691) 		0.00468
(0.0619) 		0.959
(1.00) 		0.0078
(0.0825) 		0.0954
(0.338) 		0.869
(1.00)
GAD2 16 (3%) 473 0.0179
(0.134) 		0.00642
(0.0737) 		0.0231
(0.154) 		1
(1.00) 		0.321
(0.65) 		0.822
(1.00) 		0.708
(0.979) 		0.428
(0.755) 		0.201
(0.505) 		0.013
(0.112) 		0.557
(0.87) 		0.841
(1.00)
USP44 17 (3%) 472 0.00107
(0.0257) 		0.0166
(0.128) 		0.0315
(0.182) 		0.633
(0.927) 		0.939
(1.00) 		0.715
(0.985) 		0.227
(0.544) 		0.0517
(0.245) 		0.53
(0.85) 		0.00217
(0.0396) 		0.192
(0.494) 		0.127
(0.397)
MAGI1 26 (5%) 463 0.151
(0.435) 		0.341
(0.668) 		6e-05
(0.00366) 		0.284
(0.613) 		0.575
(0.881) 		0.746
(1.00) 		0.099
(0.346) 		0.00659
(0.0743) 		0.0713
(0.288) 		0.00311
(0.0499) 		0.00256
(0.0442) 		0.192
(0.495)
CLPTM1 12 (2%) 477 0.0011
(0.0261) 		0.0355
(0.195) 		0.289
(0.617) 		0.745
(1.00) 		0.035
(0.193) 		0.0006
(0.0175) 		0.518
(0.84) 		0.688
(0.966) 		0.256
(0.578) 		0.694
(0.969)
RAPGEF6 20 (4%) 469 0.0408
(0.213) 		0.388
(0.715) 		0.0158
(0.125) 		0.282
(0.61) 		1
(1.00) 		0.941
(1.00) 		0.153
(0.439) 		0.0338
(0.189) 		0.357
(0.686) 		0.037
(0.2) 		0.358
(0.687) 		0.603
(0.905)
HEATR4 17 (3%) 472 0.256
(0.579) 		0.114
(0.375) 		0.00315
(0.0504) 		0.024
(0.157) 		0.0602
(0.268) 		0.505
(0.831) 		0.209
(0.517) 		0.00831
(0.0848) 		0.607
(0.907) 		0.0295
(0.176) 		0.0799
(0.304) 		1
(1.00)
WAC 15 (3%) 474 0.0324
(0.184) 		0.558
(0.87) 		0.00261
(0.0448) 		0.636
(0.927) 		0.774
(1.00) 		0.117
(0.38) 		0.508
(0.832) 		0.0885
(0.323) 		0.0409
(0.213) 		0.0423
(0.217) 		0.392
(0.717) 		0.758
(1.00)
ZNF354C 18 (4%) 471 0.00503
(0.0639) 		0.0156
(0.124) 		0.0255
(0.162) 		0.192
(0.495) 		0.708
(0.979) 		0.649
(0.936) 		0.519
(0.84) 		0.234
(0.555) 		0.726
(0.993) 		0.0364
(0.198) 		0.267
(0.593) 		0.363
(0.692)
PACS2 5 (1%) 484 0.045
(0.225) 		0.197
(0.5) 		0.832
(1.00) 		0.674
(0.955) 		0.014
(0.117) 		0.0003
(0.0109) 		0.0364
(0.198) 		0.323
(0.652) 		0.137
(0.413) 		0.566
(0.874)
FANCD2 18 (4%) 471 0.0173
(0.131) 		0.0982
(0.344) 		0.00259
(0.0445) 		0.437
(0.764) 		0.508
(0.832) 		1
(1.00) 		0.576
(0.882) 		0.0132
(0.113) 		0.464
(0.79) 		0.00291
(0.0482) 		0.703
(0.975) 		0.564
(0.873)
GNA14 13 (3%) 476 0.00692
(0.0765) 		0.0019
(0.0363) 		0.00591
(0.0698) 		0.635
(0.927) 		0.197
(0.499) 		0.306
(0.635) 		0.823
(1.00) 		0.0099
(0.0949) 		0.368
(0.698) 		0.144
(0.423)
PTPRG 25 (5%) 464 0.0187
(0.137) 		0.057
(0.26) 		0.00066
(0.0185) 		0.0129
(0.112) 		0.444
(0.771) 		0.46
(0.787) 		0.672
(0.955) 		0.00185
(0.0358) 		0.11
(0.367) 		0.0642
(0.275) 		0.0788
(0.302) 		0.756
(1.00)
MALT1 12 (2%) 477 0.00529
(0.0656) 		0.0154
(0.123) 		0.0351
(0.194) 		0.196
(0.498) 		0.389
(0.716) 		0.615
(0.914) 		0.165
(0.459) 		0.0775
(0.3) 		0.321
(0.65) 		0.0165
(0.127)
LRIG2 9 (2%) 480 0.0121
(0.108) 		0.026
(0.164) 		0.903
(1.00) 		1
(1.00) 		0.14
(0.417) 		0.0235
(0.156) 		0.0701
(0.285) 		0.0318
(0.183)
FBXO40 21 (4%) 468 0.135
(0.41) 		0.339
(0.666) 		0.0405
(0.212) 		0.298
(0.627) 		0.0398
(0.21) 		0.16
(0.452) 		0.552
(0.869) 		0.00094
(0.0235) 		0.296
(0.625) 		0.241
(0.564) 		0.0247
(0.159) 		1
(1.00)
ARHGAP29 19 (4%) 470 0.0987
(0.345) 		0.337
(0.665) 		0.00705
(0.0773) 		0.243
(0.568) 		0.287
(0.615) 		0.178
(0.478) 		0.0403
(0.211) 		0.0114
(0.104) 		0.603
(0.905) 		0.00346
(0.0535) 		0.699
(0.971) 		1
(1.00)
ITGA5 17 (3%) 472 0.0463
(0.229) 		0.0224
(0.152) 		0.0309
(0.18) 		0.742
(1.00) 		0.265
(0.59) 		0.469
(0.797) 		0.361
(0.69) 		0.0152
(0.123) 		0.739
(1.00) 		0.121
(0.387)
CCDC158 19 (4%) 470 0.0267
(0.166) 		0.595
(0.898) 		0.00065
(0.0183) 		0.024
(0.157) 		0.436
(0.763) 		0.748
(1.00) 		0.0261
(0.164) 		0.185
(0.485) 		0.17
(0.465) 		0.104
(0.357) 		0.359
(0.687) 		0.869
(1.00)
GRM1 32 (7%) 457 0.0582
(0.263) 		0.0244
(0.158) 		0.00063
(0.0181) 		0.267
(0.593) 		0.0948
(0.337) 		0.404
(0.729) 		0.052
(0.246) 		0.0466
(0.23) 		0.253
(0.577) 		0.0359
(0.197) 		0.0706
(0.287) 		0.657
(0.943)
KIAA0240 11 (2%) 478 0.00537
(0.0662) 		0.00138
(0.0303) 		0.00176
(0.0347) 		0.383
(0.712) 		0.384
(0.712) 		1
(1.00) 		0.177
(0.477) 		0.008
(0.0836) 		0.968
(1.00) 		0.518
(0.84)
KLHL34 13 (3%) 476 0.357
(0.686) 		0.13
(0.402) 		0.115
(0.377) 		0.916
(1.00) 		0.00299
(0.049) 		1e-05
(0.00111) 		0.0003
(0.0109) 		0.123
(0.389) 		0.00457
(0.0614) 		0.141
(0.418)
TNKS 10 (2%) 479 0.44
(0.767) 		0.0399
(0.21) 		0.127
(0.396) 		0.139
(0.415) 		0.154
(0.441) 		0.893
(1.00) 		0.027
(0.167) 		0.0282
(0.17) 		0.0329
(0.185) 		0.461
(0.788) 		0.136
(0.412) 		1
(1.00)
IVD 6 (1%) 483 0.0538
(0.252) 		0.328
(0.656) 		0.0789
(0.302) 		0.141
(0.418) 		0.0167
(0.128) 		0.00234
(0.0416) 		0.0196
(0.14) 		0.0382
(0.205)
RBM15B 9 (2%) 480 0.00161
(0.0333) 		0.127
(0.396) 		0.135
(0.411) 		0.326
(0.655) 		0.26
(0.583) 		0.00999
(0.0955) 		1
(1.00) 		0.0276
(0.168) 		0.024
(0.157) 		0.868
(1.00)
RBM15 20 (4%) 469 0.0056
(0.0676) 		0.244
(0.569) 		0.00789
(0.0831) 		0.182
(0.482) 		0.112
(0.371) 		0.94
(1.00) 		0.473
(0.802) 		0.00253
(0.0438) 		0.687
(0.965) 		0.00087
(0.0223) 		0.627
(0.925) 		0.309
(0.637)
BTBD3 13 (3%) 476 0.0493
(0.237) 		0.508
(0.832) 		0.199
(0.503) 		0.283
(0.611) 		0.014
(0.116) 		0.00037
(0.0126) 		0.00548
(0.0668) 		0.563
(0.873)
SBSN 10 (2%) 479 0.00381
(0.056) 		0.00306
(0.0495) 		0.0128
(0.111) 		0.0659
(0.276) 		0.382
(0.711) 		1
(1.00) 		0.724
(0.992) 		0.0177
(0.133) 		0.205
(0.512) 		0.545
(0.864) 		0.628
(0.925) 		1
(1.00)
CCDC110 14 (3%) 475 0.0227
(0.153) 		1
(1.00) 		0.00028
(0.0104) 		0.437
(0.764) 		0.327
(0.656) 		0.196
(0.498) 		0.0587
(0.265) 		0.00758
(0.0811) 		0.489
(0.816) 		0.228
(0.547) 		0.00453
(0.0613) 		1
(1.00)
AFF1 14 (3%) 475 0.0743
(0.293) 		0.179
(0.479) 		0.0438
(0.222) 		0.404
(0.729) 		0.0734
(0.291) 		0.0491
(0.237) 		0.753
(1.00) 		0.0103
(0.0968) 		0.861
(1.00) 		0.0291
(0.174) 		0.27
(0.595) 		0.766
(1.00)
AMBRA1 19 (4%) 470 0.00159
(0.0329) 		0.039
(0.208) 		0.00031
(0.0112) 		1
(1.00) 		0.0799
(0.304) 		0.734
(0.999) 		0.156
(0.444) 		0.00091
(0.0229) 		0.165
(0.459) 		0.101
(0.351) 		0.401
(0.726) 		0.46
(0.787)
BLM 19 (4%) 470 0.00222
(0.0401) 		0.0953
(0.338) 		2e-05
(0.0017) 		0.0732
(0.291) 		0.166
(0.461) 		0.363
(0.692) 		0.226
(0.544) 		0.00828
(0.0848) 		0.626
(0.925) 		0.0163
(0.127) 		0.358
(0.687) 		0.43
(0.757)
CLCN3 13 (3%) 476 0.257
(0.58) 		0.253
(0.577) 		0.046
(0.228) 		0.224
(0.539) 		0.0206
(0.145) 		0.103
(0.356) 		0.437
(0.764) 		0.00868
(0.0867) 		0.308
(0.637) 		0.0138
(0.116) 		0.415
(0.742) 		0.266
(0.591)
ST18 27 (6%) 462 0.114
(0.374) 		0.659
(0.946) 		0.00025
(0.00959) 		0.0758
(0.296) 		0.0904
(0.327) 		0.0697
(0.285) 		0.0153
(0.123) 		0.00175
(0.0347) 		0.0084
(0.0853) 		0.359
(0.687) 		0.627
(0.925) 		0.266
(0.591)
WFS1 12 (2%) 477 0.0508
(0.242) 		0.506
(0.832) 		0.351
(0.678) 		0.438
(0.765) 		0.00602
(0.0706) 		0.00055
(0.0165) 		0.00021
(0.00856) 		0.0155
(0.124) 		0.0932
(0.334) 		0.684
(0.963)
MTMR8 15 (3%) 474 0.0321
(0.183) 		0.0401
(0.21) 		0.709
(0.98) 		0.341
(0.668) 		0.245
(0.57) 		0.583
(0.887) 		0.46
(0.787) 		0.0279
(0.17) 		0.349
(0.676) 		0.00047
(0.0149) 		0.553
(0.87) 		0.563
(0.873)
TPR 25 (5%) 464 0.00444
(0.061) 		0.00976
(0.0939) 		0.0532
(0.25) 		0.401
(0.726) 		0.554
(0.87) 		0.24
(0.563) 		0.213
(0.522) 		0.0162
(0.127) 		0.0989
(0.346) 		0.00727
(0.0787) 		0.146
(0.426) 		0.868
(1.00)
USP1 9 (2%) 480 0.00184
(0.0357) 		0.0374
(0.202) 		0.421
(0.749) 		0.365
(0.694) 		0.00226
(0.0407) 		0.00017
(0.00754) 		0.19
(0.492) 		0.108
(0.363) 		0.136
(0.411) 		0.564
(0.873)
ISOC2 5 (1%) 484 0.322
(0.651) 		1
(1.00) 		0.85
(1.00) 		0.592
(0.896) 		0.0139
(0.116) 		0.0223
(0.152) 		0.0371
(0.201) 		0.0356
(0.195)
ABHD2 12 (2%) 477 0.0168
(0.129) 		0.0388
(0.207) 		0.287
(0.616) 		0.818
(1.00) 		0.536
(0.856) 		0.64
(0.928) 		0.876
(1.00) 		0.0438
(0.222) 		0.712
(0.983) 		0.0206
(0.145) 		0.136
(0.412) 		1
(1.00)
ESR1 20 (4%) 469 0.0696
(0.284) 		0.00302
(0.0492) 		0.00043
(0.014) 		0.31
(0.637) 		0.349
(0.677) 		0.642
(0.929) 		0.17
(0.467) 		1e-05
(0.00111) 		0.194
(0.497) 		0.0192
(0.139) 		0.36
(0.688) 		0.868
(1.00)
ZNF555 9 (2%) 480 0.0227
(0.153) 		0.00686
(0.0761) 		0.0234
(0.156) 		0.391
(0.716) 		0.535
(0.855) 		1
(1.00) 		0.0645
(0.275) 		0.0125
(0.11) 		0.551
(0.867) 		0.15
(0.433)
SFRS2IP 27 (6%) 462 0.0136
(0.115) 		0.527
(0.848) 		0.00013
(0.00626) 		0.459
(0.786) 		0.566
(0.874) 		0.707
(0.978) 		0.243
(0.568) 		0.0019
(0.0363) 		0.132
(0.407) 		0.788
(1.00) 		0.00329
(0.0515) 		0.578
(0.884)
ATAD2 22 (4%) 467 0.00713
(0.0779) 		0.00188
(0.036) 		0.00015
(0.00691) 		0.335
(0.663) 		0.346
(0.674) 		0.916
(1.00) 		0.111
(0.369) 		0.00184
(0.0357) 		0.216
(0.527) 		0.123
(0.389) 		0.519
(0.84) 		0.52
(0.842)
GRIN2B 28 (6%) 461 0.00559
(0.0675) 		0.0719
(0.289) 		0.00205
(0.038) 		0.318
(0.647) 		0.275
(0.601) 		0.507
(0.832) 		0.19
(0.492) 		0.00022
(0.00882) 		0.528
(0.848) 		0.00416
(0.0588) 		0.121
(0.387) 		0.885
(1.00)
C12ORF11 14 (3%) 475 0.0331
(0.186) 		0.792
(1.00) 		0.00886
(0.0877) 		0.444
(0.771) 		0.041
(0.213) 		0.104
(0.357) 		0.0956
(0.339) 		0.045
(0.225) 		0.482
(0.81) 		0.158
(0.449) 		0.0603
(0.268) 		1
(1.00)
CPT1B 11 (2%) 478 0.122
(0.388) 		0.0137
(0.115) 		0.0293
(0.175) 		1
(1.00) 		0.604
(0.905) 		0.529
(0.849) 		0.925
(1.00) 		0.00251
(0.0436) 		1
(1.00) 		0.0107
(0.0998) 		0.0708
(0.287) 		0.522
(0.843)
PLEKHH2 23 (5%) 466 0.00075
(0.0202) 		0.0961
(0.34) 		1e-05
(0.00111) 		0.397
(0.722) 		0.792
(1.00) 		0.299
(0.629) 		0.281
(0.609) 		0.00569
(0.0683) 		0.61
(0.911) 		0.012
(0.107) 		0.269
(0.594) 		0.603
(0.905)
KSR2 21 (4%) 468 0.31
(0.637) 		0.682
(0.962) 		0.00013
(0.00626) 		0.0411
(0.214) 		0.0922
(0.332) 		0.193
(0.495) 		0.00495
(0.0636) 		0.00128
(0.029) 		0.188
(0.489) 		0.624
(0.923) 		0.104
(0.357) 		0.925
(1.00)
LPPR4 27 (6%) 462 0.14
(0.416) 		0.00794
(0.0834) 		0.00973
(0.0937) 		0.0182
(0.135) 		0.326
(0.655) 		0.316
(0.644) 		0.354
(0.682) 		0.0351
(0.194) 		0.334
(0.661) 		0.103
(0.354) 		0.358
(0.687) 		0.869
(1.00)
TEX2 12 (2%) 477 0.00019
(0.00802) 		0.0666
(0.277) 		0.39
(0.716) 		0.261
(0.585) 		0.00027
(0.0101) 		0.00014
(0.0066) 		0.511
(0.834) 		0.0647
(0.275) 		0.00484
(0.0629) 		1
(1.00)
CAPRIN2 17 (3%) 472 0.036
(0.197) 		0.309
(0.637) 		0.0155
(0.124) 		0.4
(0.725) 		0.00426
(0.0595) 		0.301
(0.63) 		0.256
(0.578) 		0.0448
(0.225) 		0.575
(0.881) 		0.28
(0.607) 		0.27
(0.595) 		0.375
(0.705)
SIN3A 20 (4%) 469 0.0231
(0.154) 		0.639
(0.927) 		0.00022
(0.00882) 		0.714
(0.984) 		0.469
(0.797) 		0.707
(0.979) 		0.595
(0.898) 		0.00256
(0.0442) 		0.24
(0.563) 		0.0202
(0.143) 		0.353
(0.68) 		1
(1.00)
AFM 17 (3%) 472 0.029
(0.174) 		0.338
(0.665) 		0.186
(0.486) 		0.319
(0.648) 		0.196
(0.498) 		0.628
(0.925) 		0.884
(1.00) 		0.292
(0.62) 		0.658
(0.945) 		0.0242
(0.158) 		0.0131
(0.113) 		0.041
(0.213)
MXRA5 46 (9%) 443 0.00648
(0.0739) 		0.578
(0.884) 		3e-05
(0.0022) 		0.0998
(0.348) 		0.795
(1.00) 		0.115
(0.376) 		0.00246
(0.0431) 		4e-05
(0.00269) 		0.18
(0.48) 		0.277
(0.604) 		0.064
(0.275) 		0.78
(1.00)
PAX2 7 (1%) 482 0.0645
(0.275) 		0.35
(0.678) 		0.0999
(0.348) 		0.0371
(0.201) 		0.509
(0.832) 		0.294
(0.622) 		0.0114
(0.104) 		0.00558
(0.0675) 		0.351
(0.679) 		0.0208
(0.146)
NEDD9 13 (3%) 476 0.00827
(0.0847) 		0.0719
(0.289) 		0.00033
(0.0117) 		0.124
(0.392) 		0.601
(0.904) 		0.636
(0.927) 		0.146
(0.426) 		0.00636
(0.0732) 		0.215
(0.525) 		0.0425
(0.218)
TRPM6 30 (6%) 459 0.0651
(0.276) 		0.0399
(0.21) 		1e-05
(0.00111) 		0.182
(0.483) 		0.282
(0.61) 		0.095
(0.338) 		0.0621
(0.271) 		0.0014
(0.0305) 		0.316
(0.644) 		0.0129
(0.112) 		0.0918
(0.331) 		0.683
(0.963)
KIAA1267 19 (4%) 470 0.0911
(0.329) 		0.104
(0.357) 		0.00098
(0.0241) 		0.0242
(0.158) 		1
(1.00) 		0.537
(0.857) 		0.116
(0.378) 		0.0042
(0.0591) 		0.265
(0.591) 		0.00045
(0.0144) 		0.0854
(0.316) 		0.578
(0.884)
SMC4 20 (4%) 469 0.0491
(0.237) 		0.0771
(0.299) 		3e-05
(0.0022) 		0.602
(0.905) 		0.506
(0.832) 		0.569
(0.876) 		0.0219
(0.15) 		0.0307
(0.18) 		0.789
(1.00) 		0.143
(0.421)
NTN4 9 (2%) 480 0.566
(0.874) 		0.676
(0.958) 		0.0379
(0.204) 		0.0369
(0.2) 		0.108
(0.364) 		0.0326
(0.184) 		0.672
(0.955) 		0.695
(0.969) 		0.392
(0.717) 		0.0265
(0.165)
ZNF462 28 (6%) 461 0.0134
(0.114) 		0.152
(0.438) 		1e-05
(0.00111) 		0.184
(0.485) 		0.0613
(0.269) 		0.168
(0.463) 		0.218
(0.531) 		4e-05
(0.00269) 		0.39
(0.716) 		0.00262
(0.0449) 		0.0696
(0.284) 		0.142
(0.419)
SLC9A9 23 (5%) 466 0.00389
(0.0567) 		0.0171
(0.13) 		0.0217
(0.149) 		1
(1.00) 		0.627
(0.925) 		0.057
(0.26) 		0.643
(0.93) 		0.0491
(0.237) 		0.22
(0.533) 		0.202
(0.508)
TRIO 32 (7%) 457 0.0103
(0.0968) 		0.185
(0.485) 		0.00075
(0.0202) 		0.0701
(0.285) 		0.219
(0.532) 		0.327
(0.656) 		0.0781
(0.301) 		0.00281
(0.047) 		0.802
(1.00) 		0.00643
(0.0737) 		0.233
(0.554) 		0.649
(0.936)
KIF5B 17 (3%) 472 0.132
(0.406) 		0.045
(0.225) 		0.0004
(0.0132) 		0.929
(1.00) 		0.939
(1.00) 		0.938
(1.00) 		0.985
(1.00) 		0.00993
(0.095) 		0.478
(0.806) 		0.0303
(0.178) 		0.0954
(0.338) 		0.87
(1.00)
SEMA3A 16 (3%) 473 0.0304
(0.179) 		0.335
(0.663) 		0.0131
(0.113) 		0.557
(0.87) 		0.209
(0.517) 		0.147
(0.428) 		0.229
(0.549) 		0.0236
(0.156) 		0.98
(1.00) 		0.0458
(0.228) 		0.393
(0.718) 		1
(1.00)
DDX11 8 (2%) 481 0.00464
(0.0619) 		0.0259
(0.163) 		1
(1.00) 		0.723
(0.991) 		0.00233
(0.0415) 		0.00432
(0.06) 		0.49
(0.816) 		0.38
(0.71)
SLC30A8 17 (3%) 472 0.00162
(0.0334) 		0.0151
(0.122) 		0.464
(0.79) 		0.85
(1.00) 		0.938
(1.00) 		0.937
(1.00) 		0.72
(0.989) 		0.00485
(0.063) 		0.803
(1.00) 		0.0114
(0.104) 		0.557
(0.87) 		0.254
(0.577)
CDHR3 15 (3%) 474 3e-05
(0.0022) 		0.00621
(0.0722) 		0.105
(0.358) 		0.636
(0.927) 		0.00069
(0.0192) 		2e-05
(0.0017) 		0.134
(0.408) 		0.0907
(0.328) 		0.147
(0.428) 		0.427
(0.754)
GPR156 14 (3%) 475 0.0013
(0.0292) 		0.105
(0.359) 		0.00033
(0.0117) 		0.712
(0.983) 		0.426
(0.753) 		0.211
(0.519) 		0.409
(0.736) 		0.0111
(0.102) 		0.53
(0.85) 		0.0447
(0.225)
FOXO4 13 (3%) 476 0.628
(0.925) 		1
(1.00) 		0.00859
(0.0864) 		0.0324
(0.184) 		1
(1.00) 		1
(1.00) 		0.0749
(0.294) 		0.0282
(0.171) 		0.51
(0.832) 		0.0224
(0.152)
SLITRK2 26 (5%) 463 0.00711
(0.0777) 		0.0249
(0.16) 		0.0212
(0.147) 		0.0524
(0.247) 		0.665
(0.95) 		0.741
(1.00) 		0.238
(0.561) 		3e-05
(0.0022) 		0.427
(0.754) 		0.154
(0.441) 		0.0868
(0.319) 		0.381
(0.71)
CDH8 40 (8%) 449 0.00058
(0.0171) 		0.0003
(0.0109) 		0.0227
(0.153) 		0.933
(1.00) 		0.893
(1.00) 		0.831
(1.00) 		0.491
(0.818) 		0.00095
(0.0235) 		0.568
(0.875) 		0.203
(0.509) 		0.0773
(0.3) 		0.625
(0.924)
TBC1D25 11 (2%) 478 0.0108
(0.1) 		0.00041
(0.0135) 		0.00577
(0.0688) 		0.556
(0.87) 		0.166
(0.46) 		0.0832
(0.312) 		0.429
(0.756) 		0.0315
(0.182) 		0.474
(0.802) 		0.101
(0.349)
TNXB 43 (9%) 446 0.125
(0.392) 		0.767
(1.00) 		6e-05
(0.00366) 		0.586
(0.89) 		0.0774
(0.3) 		0.354
(0.683) 		0.114
(0.374) 		0.00034
(0.012) 		0.0125
(0.11) 		0.0397
(0.21) 		0.0733
(0.291) 		0.835
(1.00)
CASC5 22 (4%) 467 0.112
(0.372) 		0.88
(1.00) 		0.00018
(0.00778) 		0.106
(0.36) 		0.185
(0.485) 		0.345
(0.673) 		0.43
(0.757) 		0.00127
(0.0288) 		0.135
(0.41) 		0.0252
(0.161) 		0.00365
(0.0549) 		0.575
(0.881)
PRKCG 24 (5%) 465 0.0008
(0.021) 		0.00498
(0.0638) 		0.0166
(0.128) 		0.24
(0.563) 		0.226
(0.543) 		1
(1.00) 		0.222
(0.536) 		0.101
(0.351) 		0.543
(0.863) 		0.0189
(0.137) 		0.0851
(0.316) 		1
(1.00)
SMPDL3B 9 (2%) 480 0.748
(1.00) 		0.0249
(0.16) 		1
(1.00) 		0.724
(0.992) 		0.0591
(0.266) 		0.032
(0.183) 		0.0112
(0.103) 		0.7
(0.972) 		0.024
(0.157) 		0.868
(1.00)
KIF26A 10 (2%) 479 0.0112
(0.103) 		0.013
(0.112) 		0.0524
(0.247) 		0.361
(0.69) 		0.00022
(0.00882) 		1e-05
(0.00111) 		0.638
(0.927) 		0.0733
(0.291)
GPR158 29 (6%) 460 0.318
(0.646) 		0.519
(0.84) 		0.00194
(0.0369) 		0.748
(1.00) 		0.565
(0.873) 		0.727
(0.994) 		0.31
(0.638) 		3e-05
(0.0022) 		0.295
(0.624) 		0.00149
(0.0317) 		0.00172
(0.0343) 		0.521
(0.843)
CEBPA 17 (3%) 472 0.911
(1.00) 		0.86
(1.00) 		0.001
(0.0245) 		0.0621
(0.271) 		0.00058
(0.0171) 		2e-05
(0.0017) 		1e-05
(0.00111) 		0.0585
(0.264) 		0.664
(0.95) 		0.892
(1.00)
KIAA0922 21 (4%) 468 0.00091
(0.0229) 		0.097
(0.341) 		0.00763
(0.0815) 		0.739
(1.00) 		0.39
(0.716) 		1
(1.00) 		0.401
(0.726) 		0.0312
(0.181) 		0.775
(1.00) 		0.0067
(0.075) 		1
(1.00) 		0.15
(0.433)
ESYT1 10 (2%) 479 0.628
(0.925) 		0.0322
(0.183) 		1
(1.00) 		0.499
(0.825) 		0.0285
(0.172) 		0.0151
(0.122) 		0.881
(1.00) 		0.13
(0.401) 		0.196
(0.498) 		0.0417
(0.215)
SUPT6H 23 (5%) 466 0.309
(0.637) 		0.0762
(0.297) 		0.0018
(0.0352) 		0.121
(0.387) 		0.688
(0.965) 		0.745
(1.00) 		0.402
(0.728) 		0.021
(0.146) 		0.0282
(0.17) 		0.00157
(0.0327) 		0.728
(0.995) 		0.281
(0.609)
TXNRD1 9 (2%) 480 0.0653
(0.276) 		0.254
(0.577) 		0.126
(0.394) 		0.141
(0.417) 		0.00484
(0.0629) 		0.339
(0.666) 		0.0445
(0.224) 		0.02
(0.142) 		0.122
(0.387) 		0.862
(1.00) 		0.0236
(0.156) 		0.635
(0.927)
NAA15 15 (3%) 474 0.0745
(0.293) 		0.0608
(0.268) 		0.0066
(0.0743) 		0.0948
(0.337) 		0.00836
(0.0852) 		0.634
(0.927) 		0.237
(0.56) 		0.00886
(0.0877) 		0.889
(1.00) 		0.00506
(0.0641)
TSC1 14 (3%) 475 0.0226
(0.152) 		0.254
(0.577) 		0.00355
(0.0542) 		0.176
(0.475) 		0.423
(0.75) 		0.196
(0.498) 		0.458
(0.785) 		0.0947
(0.337) 		0.0264
(0.164) 		0.193
(0.497) 		0.00401
(0.0578) 		0.561
(0.872)
RBM16 16 (3%) 473 0.00558
(0.0675) 		0.0722
(0.29) 		0.00374
(0.0556) 		0.291
(0.62) 		0.0856
(0.316) 		0.756
(1.00) 		0.615
(0.914) 		0.00949
(0.0921) 		0.253
(0.577) 		0.0832
(0.312) 		0.025
(0.16) 		0.127
(0.396)
RASA1 19 (4%) 470 0.0259
(0.163) 		0.595
(0.898) 		1e-05
(0.00111) 		0.00839
(0.0853) 		0.905
(1.00) 		0.76
(1.00) 		0.115
(0.375) 		0.0509
(0.242) 		0.195
(0.498) 		0.475
(0.803) 		0.00417
(0.0588) 		0.565
(0.874)
CRIPAK 29 (6%) 460 0.368
(0.697) 		0.107
(0.361) 		0.804
(1.00) 		0.41
(0.737) 		1e-05
(0.00111) 		1e-05
(0.00111) 		0.00113
(0.0266) 		0.164
(0.458) 		0.737
(1.00) 		0.401
(0.726)
ZFP36L2 17 (3%) 472 0.131
(0.404) 		0.448
(0.774) 		0.073
(0.291) 		0.419
(0.747) 		0.0319
(0.183) 		1e-05
(0.00111) 		0.182
(0.483) 		0.307
(0.636) 		0.0143
(0.118) 		0.363
(0.692)
FAM9A 12 (2%) 477 0.00485
(0.063) 		0.437
(0.764) 		0.512
(0.834) 		0.404
(0.73) 		0.203
(0.509) 		0.00076
(0.0204) 		0.23
(0.55) 		0.0537
(0.251) 		0.0251
(0.161) 		0.566
(0.874)
RPTN 18 (4%) 471 0.502
(0.829) 		0.787
(1.00) 		1
(1.00) 		0.707
(0.979) 		0.00018
(0.00778) 		0.0001
(0.00522) 		2e-05
(0.0017) 		0.0892
(0.324) 		0.35
(0.678) 		0.308
(0.637)
THOC7 11 (2%) 478 0.458
(0.784) 		0.175
(0.475) 		0.631
(0.926) 		0.284
(0.612) 		0.0552
(0.256) 		0.0411
(0.214) 		0.00984
(0.0944) 		0.0123
(0.109) 		0.152
(0.438) 		0.569
(0.876)
P2RY13 15 (3%) 474 0.0204
(0.144) 		0.0103
(0.0973) 		0.603
(0.905) 		0.916
(1.00) 		0.0799
(0.304) 		0.0415
(0.215) 		0.21
(0.518) 		0.346
(0.674) 		0.874
(1.00) 		1
(1.00)
PLEKHF2 12 (2%) 477 0.451
(0.777) 		0.929
(1.00) 		0.348
(0.676) 		0.526
(0.847) 		0.0467
(0.23) 		0.0171
(0.13) 		0.0207
(0.145) 		0.335
(0.663) 		0.346
(0.674) 		0.216
(0.526)
ALG12 7 (1%) 482 0.0103
(0.0973) 		0.0121
(0.108) 		0.547
(0.865) 		0.885
(1.00) 		0.0111
(0.102) 		0.118
(0.383) 		0.319
(0.648) 		0.133
(0.408)
RSPH3 11 (2%) 478 0.345
(0.672) 		0.124
(0.39) 		0.173
(0.471) 		0.822
(1.00) 		0.113
(0.373) 		0.0004
(0.0132) 		0.227
(0.545) 		0.348
(0.676) 		0.00198
(0.0373) 		0.00939
(0.0912)
VCX2 12 (2%) 477 0.245
(0.569) 		0.0657
(0.276) 		1
(1.00) 		0.558
(0.87) 		0.00533
(0.0659) 		0.00541
(0.0664) 		0.00109
(0.0259) 		0.0798
(0.304) 		0.533
(0.853) 		0.515
(0.836)
SLC26A8 19 (4%) 470 0.0264
(0.164) 		0.739
(1.00) 		5e-05
(0.00318) 		0.401
(0.726) 		0.865
(1.00) 		0.622
(0.921) 		0.636
(0.927) 		0.00808
(0.0838) 		0.684
(0.963) 		0.556
(0.87) 		0.89
(1.00) 		0.642
(0.929)
L1TD1 20 (4%) 469 0.0014
(0.0305) 		0.124
(0.39) 		0.01
(0.0956) 		0.0667
(0.278) 		0.414
(0.742) 		0.832
(1.00) 		0.138
(0.414) 		0.0131
(0.113) 		0.44
(0.767) 		0.0709
(0.287) 		0.866
(1.00) 		0.383
(0.712)
FKBP9 19 (4%) 470 0.00394
(0.0571) 		0.254
(0.577) 		0.00062
(0.018) 		0.144
(0.423) 		0.112
(0.372) 		0.941
(1.00) 		0.264
(0.589) 		0.00131
(0.0293) 		0.379
(0.709) 		0.498
(0.824) 		0.0729
(0.291) 		1
(1.00)
NEXN 20 (4%) 469 0.00833
(0.085) 		0.638
(0.927) 		0.243
(0.568) 		0.797
(1.00) 		0.0233
(0.155) 		0.0369
(0.2) 		0.743
(1.00) 		0.0989
(0.346) 		0.265
(0.591) 		0.31
(0.637) 		0.672
(0.955) 		0.2
(0.504)
HIST1H1T 10 (2%) 479 0.738
(1.00) 		0.852
(1.00) 		0.193
(0.497) 		0.605
(0.906) 		0.00147
(0.0313) 		0.00707
(0.0774) 		0.00568
(0.0683) 		0.594
(0.898) 		1
(1.00) 		0.267
(0.592)
KDM6A 28 (6%) 461 0.416
(0.743) 		0.545
(0.865) 		0.22
(0.534) 		0.891
(1.00) 		0.00048
(0.0151) 		1e-05
(0.00111) 		0.00051
(0.0159) 		0.346
(0.674) 		0.528
(0.848) 		0.194
(0.497)
CLSPN 34 (7%) 455 0.0982
(0.344) 		0.88
(1.00) 		0.275
(0.601) 		0.138
(0.414) 		0.621
(0.919) 		0.969
(1.00) 		0.0125
(0.11) 		0.00466
(0.0619) 		0.0299
(0.177) 		0.246
(0.571) 		0.234
(0.554) 		0.301
(0.63)
FRMPD4 36 (7%) 453 0.016
(0.125) 		0.556
(0.87) 		0.807
(1.00) 		0.574
(0.881) 		0.89
(1.00) 		0.45
(0.776) 		0.00918
(0.09) 		0.00055
(0.0165) 		0.0773
(0.3) 		0.148
(0.43) 		0.413
(0.74) 		0.819
(1.00)
GFI1 11 (2%) 478 0.0177
(0.133) 		0.0131
(0.113) 		0.657
(0.944) 		1
(1.00) 		0.085
(0.315) 		0.74
(1.00) 		0.547
(0.865) 		0.0166
(0.128) 		0.728
(0.995) 		0.152
(0.438)
SLC9A10 23 (5%) 466 0.0314
(0.182) 		0.577
(0.884) 		0.0192
(0.139) 		0.109
(0.366) 		0.0318
(0.183) 		0.959
(1.00) 		0.126
(0.395) 		0.0577
(0.262) 		0.758
(1.00) 		0.39
(0.716) 		0.134
(0.41) 		0.322
(0.65)
CDX2 6 (1%) 483 0.0225
(0.152) 		0.197
(0.499) 		1
(1.00) 		0.497
(0.823) 		0.0354
(0.195) 		0.00211
(0.0387) 		0.259
(0.583) 		0.274
(0.6)
NAA25 18 (4%) 471 0.00381
(0.056) 		0.0101
(0.0962) 		0.00585
(0.0693) 		0.499
(0.825) 		0.434
(0.762) 		0.42
(0.747) 		0.288
(0.617) 		0.157
(0.447) 		0.4
(0.725) 		0.108
(0.363) 		0.909
(1.00) 		0.177
(0.476)
FIGNL1 19 (4%) 470 0.00382
(0.056) 		0.739
(1.00) 		0.0653
(0.276) 		0.701
(0.973) 		0.61
(0.911) 		0.636
(0.927) 		0.556
(0.87) 		0.0247
(0.159) 		0.73
(0.997) 		0.0124
(0.11)
GNPAT 19 (4%) 470 0.171
(0.468) 		0.482
(0.81) 		0.105
(0.359) 		0.268
(0.594) 		0.00407
(0.0581) 		9e-05
(0.00485) 		0.00531
(0.0658) 		0.172
(0.47) 		0.269
(0.594) 		0.787
(1.00)
OSBPL11 19 (4%) 470 0.00659
(0.0743) 		0.00189
(0.0361) 		0.0715
(0.289) 		0.402
(0.728) 		0.283
(0.611) 		0.241
(0.565) 		0.592
(0.896) 		0.0237
(0.157) 		0.391
(0.716) 		0.115
(0.376) 		0.834
(1.00) 		0.731
(0.998)
SLK 25 (5%) 464 0.0225
(0.152) 		0.638
(0.927) 		0.00175
(0.0347) 		0.455
(0.781) 		0.34
(0.667) 		0.157
(0.446) 		0.68
(0.961) 		0.00659
(0.0743) 		0.108
(0.364) 		0.661
(0.947) 		0.343
(0.671) 		0.681
(0.962)
ZFX 14 (3%) 475 0.00634
(0.0732) 		0.0183
(0.135) 		0.258
(0.581) 		0.583
(0.887) 		0.381
(0.71) 		0.839
(1.00) 		0.532
(0.852) 		0.0306
(0.179) 		0.96
(1.00) 		0.0738
(0.292) 		0.252
(0.577) 		1
(1.00)
PIK3IP1 9 (2%) 480 0.0738
(0.292) 		0.143
(0.42) 		0.381
(0.711) 		0.292
(0.621) 		0.00768
(0.0818) 		0.0109
(0.101) 		0.00296
(0.0487) 		0.649
(0.936) 		0.785
(1.00) 		1
(1.00)
C10ORF79 32 (7%) 457 0.00152
(0.032) 		0.311
(0.638) 		0.0288
(0.173) 		0.272
(0.598) 		0.622
(0.92) 		0.186
(0.486) 		0.338
(0.665) 		0.00649
(0.074) 		0.254
(0.577) 		0.0681
(0.281) 		0.467
(0.794) 		0.322
(0.65)
AXIN2 24 (5%) 465 0.179
(0.479) 		0.593
(0.897) 		0.0105
(0.0985) 		0.297
(0.626) 		0.267
(0.593) 		0.774
(1.00) 		0.211
(0.52) 		0.0234
(0.156) 		0.669
(0.953) 		0.126
(0.395) 		0.0239
(0.157) 		0.433
(0.76)
FAHD2A 7 (1%) 482 0.106
(0.359) 		0.383
(0.712) 		0.0243
(0.158) 		0.187
(0.487) 		0.233
(0.553) 		0.00056
(0.0168) 		0.322
(0.651) 		0.386
(0.713) 		0.00071
(0.0196) 		0.487
(0.814)
MBD6 16 (3%) 473 0.155
(0.442) 		0.463
(0.79) 		0.0038
(0.056) 		0.532
(0.851) 		0.609
(0.91) 		0.559
(0.871) 		0.243
(0.568) 		1e-05
(0.00111) 		0.249
(0.575) 		0.00458
(0.0614)
SENP6 18 (4%) 471 0.107
(0.361) 		0.194
(0.497) 		0.187
(0.487) 		0.372
(0.702) 		0.0148
(0.121) 		1e-05
(0.00111) 		0.0722
(0.29) 		0.0439
(0.222) 		0.781
(1.00) 		0.696
(0.969)
FAM133B 5 (1%) 484 0.042
(0.216) 		0.385
(0.712) 		0.374
(0.704) 		0.168
(0.462) 		0.104
(0.357) 		0.031
(0.181) 		0.407
(0.732) 		0.766
(1.00) 		0.0135
(0.114) 		0.867
(1.00)
RBM12 15 (3%) 474 0.786
(1.00) 		0.351
(0.678) 		0.0458
(0.228) 		0.0857
(0.317) 		0.499
(0.825) 		0.782
(1.00) 		0.0778
(0.3) 		0.00735
(0.0793) 		0.0106
(0.0987) 		0.849
(1.00) 		1
(1.00) 		0.766
(1.00)
PI4K2B 14 (3%) 475 0.291
(0.62) 		0.296
(0.625) 		0.359
(0.687) 		0.559
(0.871) 		0.0164
(0.127) 		0.0266
(0.165) 		0.0796
(0.304) 		0.00454
(0.0613) 		0.782
(1.00) 		0.449
(0.775)
LINGO4 10 (2%) 479 0.073
(0.291) 		0.00336
(0.0524) 		0.0109
(0.101) 		0.864
(1.00) 		0.352
(0.68) 		0.638
(0.927) 		0.583
(0.887) 		0.061
(0.269) 		0.755
(1.00) 		0.00809
(0.0839)
MOBKL2B 9 (2%) 480 0.533
(0.853) 		0.82
(1.00) 		0.818
(1.00) 		0.895
(1.00) 		0.0316
(0.182) 		0.00058
(0.0171) 		0.0141
(0.117) 		0.3
(0.63) 		0.697
(0.97) 		0.87
(1.00)
NT5DC3 14 (3%) 475 0.419
(0.747) 		0.402
(0.728) 		0.319
(0.648) 		0.612
(0.912) 		0.0189
(0.137) 		0.00103
(0.025) 		0.123
(0.39) 		0.126
(0.394) 		0.00132
(0.0294) 		0.188
(0.489)
CARD11 49 (10%) 440 0.606
(0.906) 		0.338
(0.666) 		0.379
(0.708) 		0.906
(1.00) 		0.538
(0.858) 		0.748
(1.00) 		0.014
(0.116) 		0.00095
(0.0235) 		0.00577
(0.0688) 		0.32
(0.649) 		0.959
(1.00) 		0.95
(1.00)
NUP188 23 (5%) 466 0.0415
(0.215) 		1
(1.00) 		0.0177
(0.133) 		0.947
(1.00) 		0.689
(0.966) 		0.676
(0.957) 		0.574
(0.881) 		0.0647
(0.275) 		0.134
(0.409) 		0.092
(0.331) 		0.00252
(0.0437) 		0.492
(0.818)
CNIH4 6 (1%) 483 0.371
(0.701) 		0.686
(0.964) 		0.137
(0.413) 		0.212
(0.52) 		0.00616
(0.0718) 		0.014
(0.117) 		0.0308
(0.18) 		0.679
(0.961) 		0.546
(0.865) 		0.869
(1.00)
TOP2A 20 (4%) 469 0.073
(0.291) 		0.833
(1.00) 		0.00062
(0.018) 		0.194
(0.497) 		0.739
(1.00) 		0.556
(0.87) 		0.0769
(0.299) 		6e-05
(0.00366) 		0.0214
(0.148) 		0.129
(0.4) 		0.0603
(0.268) 		1
(1.00)
OR51E1 15 (3%) 474 0.122
(0.387) 		1
(1.00) 		0.711
(0.982) 		0.369
(0.699) 		0.609
(0.91) 		0.768
(1.00) 		0.196
(0.499) 		0.0134
(0.114) 		0.0287
(0.172) 		0.0275
(0.168) 		0.39
(0.716) 		0.483
(0.81)
UBQLN2 12 (2%) 477 0.0156
(0.124) 		0.369
(0.698) 		0.0427
(0.218) 		0.193
(0.495) 		0.0555
(0.257) 		0.00039
(0.013) 		0.745
(1.00) 		0.224
(0.539) 		1
(1.00) 		0.603
(0.905)
OSBPL2 12 (2%) 477 0.337
(0.665) 		0.742
(1.00) 		0.213
(0.522) 		0.407
(0.733) 		0.0335
(0.187) 		0.0006
(0.0175) 		0.0174
(0.132) 		0.506
(0.832)
CRY1 16 (3%) 473 0.0216
(0.149) 		0.615
(0.914) 		0.192
(0.494) 		0.879
(1.00) 		0.117
(0.38) 		0.0171
(0.13) 		0.124
(0.391) 		0.0135
(0.114) 		0.868
(1.00) 		0.147
(0.429)
PALB2 20 (4%) 469 0.114
(0.373) 		0.0159
(0.125) 		0.026
(0.164) 		0.617
(0.916) 		0.665
(0.95) 		0.579
(0.885) 		0.107
(0.361) 		0.0153
(0.123) 		0.106
(0.359) 		0.0508
(0.242)
PAQR5 8 (2%) 481 0.93
(1.00) 		0.322
(0.651) 		0.684
(0.963) 		0.83
(1.00) 		0.0316
(0.182) 		0.00507
(0.0641) 		0.00172
(0.0343) 		0.463
(0.789)
FAHD2B 6 (1%) 483 0.0222
(0.151) 		0.0667
(0.278) 		0.511
(0.833) 		0.58
(0.885) 		0.0081
(0.0839) 		4e-05
(0.00269) 		0.262
(0.587) 		0.42
(0.748)
B4GALNT4 11 (2%) 478 0.0002
(0.00826) 		0.0733
(0.291) 		0.115
(0.376) 		0.763
(1.00) 		0.0135
(0.114) 		1e-05
(0.00111) 		0.427
(0.754) 		0.0504
(0.241) 		0.134
(0.41) 		1
(1.00)
RUNX1 41 (8%) 448 0.0734
(0.291) 		0.177
(0.477) 		0.334
(0.662) 		0.246
(0.572) 		0.184
(0.485) 		0.114
(0.373) 		4e-05
(0.00269) 		4e-05
(0.00269) 		2e-05
(0.0017) 		0.16
(0.452) 		0.462
(0.788) 		0.85
(1.00)
C9ORF84 21 (4%) 468 0.00846
(0.0857) 		0.341
(0.668) 		0.00065
(0.0183) 		0.476
(0.805) 		0.282
(0.611) 		0.625
(0.923) 		0.133
(0.407) 		0.0654
(0.276) 		0.0678
(0.28) 		0.00131
(0.0293) 		0.106
(0.36) 		0.567
(0.875)
ZNF449 14 (3%) 475 0.00813
(0.0841) 		0.351
(0.678) 		0.0227
(0.153) 		0.25
(0.576) 		0.0858
(0.317) 		0.636
(0.927) 		0.255
(0.578) 		0.00144
(0.031) 		0.762
(1.00) 		0.0927
(0.333) 		0.425
(0.753) 		0.0965
(0.34)
MBTD1 11 (2%) 478 0.738
(1.00) 		0.465
(0.792) 		0.735
(1) 		1
(1.00) 		0.00421
(0.0591) 		0.0011
(0.0261) 		0.0741
(0.292) 		0.159
(0.451) 		0.0134
(0.114) 		0.603
(0.905)
MKL2 11 (2%) 478 0.034
(0.189) 		0.437
(0.764) 		0.658
(0.945) 		0.895
(1.00) 		0.167
(0.461) 		3e-05
(0.0022) 		0.0827
(0.311) 		0.49
(0.816) 		0.0248
(0.159) 		0.27
(0.595)
PTPN12 21 (4%) 468 0.00704
(0.0773) 		0.233
(0.553) 		0.00016
(0.00722) 		0.853
(1.00) 		0.616
(0.915) 		0.497
(0.823) 		0.798
(1.00) 		0.00476
(0.0623) 		0.382
(0.711) 		0.0993
(0.346) 		0.254
(0.577) 		1
(1.00)
SPR 7 (1%) 482 0.326
(0.655) 		0.0262
(0.164) 		1
(1.00) 		1
(1.00) 		0.00021
(0.00856) 		8e-05
(0.00452) 		0.0734
(0.291) 		0.417
(0.745)
HORMAD1 13 (3%) 476 0.0323
(0.184) 		0.0673
(0.279) 		0.539
(0.859) 		0.56
(0.871) 		0.11
(0.369) 		0.0136
(0.115) 		0.146
(0.426) 		0.5
(0.826) 		0.00327
(0.0514) 		0.0533
(0.25)
KIAA1012 25 (5%) 464 0.0538
(0.252) 		0.106
(0.359) 		0.00238
(0.0419) 		0.376
(0.706) 		0.299
(0.628) 		1
(1.00) 		0.531
(0.851) 		0.00716
(0.078) 		0.347
(0.675) 		0.0448
(0.225) 		0.146
(0.426) 		0.429
(0.756)
TGFBR1 17 (3%) 472 0.0353
(0.195) 		0.244
(0.569) 		0.00025
(0.00959) 		0.147
(0.428) 		0.594
(0.898) 		0.419
(0.747) 		0.104
(0.357) 		0.00229
(0.0411) 		0.288
(0.616) 		0.333
(0.66)
KCNS3 21 (4%) 468 0.405
(0.73) 		1
(1.00) 		0.32
(0.649) 		0.126
(0.395) 		0.312
(0.639) 		0.505
(0.832) 		0.177
(0.477) 		0.0158
(0.125) 		0.068
(0.281) 		0.0278
(0.169) 		0.0309
(0.18) 		0.939
(1.00)
DCAF6 18 (4%) 471 0.00497
(0.0637) 		0.125
(0.392) 		0.0535
(0.251) 		0.25
(0.576) 		0.0508
(0.242) 		0.147
(0.428) 		0.547
(0.865) 		0.00301
(0.0491) 		0.546
(0.865) 		0.0179
(0.134) 		0.356
(0.686) 		0.87
(1.00)
RING1 11 (2%) 478 0.00471
(0.062) 		0.0672
(0.279) 		0.267
(0.592) 		0.84
(1.00) 		0.0104
(0.0977) 		0.00111
(0.0263) 		0.17
(0.466) 		0.917
(1.00) 		0.254
(0.577) 		0.697
(0.97)
SLC7A6 7 (1%) 482 0.135
(0.411) 		0.504
(0.831) 		0.24
(0.563) 		0.76
(1.00) 		0.0423
(0.217) 		0.0268
(0.166) 		0.00337
(0.0525) 		0.246
(0.571)
IQGAP2 27 (6%) 462 0.166
(0.46) 		0.0397
(0.21) 		0.0425
(0.218) 		0.553
(0.87) 		0.269
(0.594) 		0.512
(0.834) 		0.832
(1.00) 		0.162
(0.455) 		0.791
(1.00) 		5e-05
(0.00318) 		0.292
(0.621) 		0.149
(0.432)
OR1I1 11 (2%) 478 0.412
(0.738) 		0.0376
(0.203) 		0.774
(1.00) 		0.114
(0.375) 		0.166
(0.46) 		0.0296
(0.176) 		0.0568
(0.259) 		0.0153
(0.123) 		0.872
(1.00) 		0.563
(0.873)
MRPS5 12 (2%) 477 0.00302
(0.0492) 		0.787
(1.00) 		0.39
(0.716) 		0.285
(0.613) 		0.207
(0.513) 		0.0748
(0.294) 		0.00181
(0.0353) 		0.00038
(0.0128)
DSG1 21 (4%) 468 0.00395
(0.0571) 		0.104
(0.357) 		0.00237
(0.0418) 		0.631
(0.926) 		0.00556
(0.0675) 		0.0655
(0.276) 		0.383
(0.711) 		0.152
(0.437) 		0.809
(1.00) 		0.373
(0.703) 		0.0597
(0.267) 		1
(1.00)
DKK2 26 (5%) 463 0.0273
(0.167) 		0.0233
(0.155) 		1
(1.00) 		0.498
(0.825) 		0.0678
(0.28) 		0.352
(0.68) 		0.0855
(0.316) 		0.0116
(0.106) 		0.42
(0.748) 		0.153
(0.439) 		0.833
(1.00) 		0.548
(0.866)
HIVEP2 24 (5%) 465 0.0158
(0.125) 		0.342
(0.669) 		0.00233
(0.0415) 		0.299
(0.627) 		0.0121
(0.108) 		1
(1.00) 		0.955
(1.00) 		0.0608
(0.268) 		0.989
(1.00) 		0.0744
(0.293) 		0.628
(0.925) 		1
(1.00)
CLVS2 10 (2%) 479 0.00766
(0.0817) 		0.185
(0.485) 		0.248
(0.574) 		0.572
(0.878) 		0.76
(1.00) 		0.45
(0.776) 		0.945
(1.00) 		0.0448
(0.225) 		0.0192
(0.139) 		0.0842
(0.314)
ANKRD30A 33 (7%) 456 0.0643
(0.275) 		1
(1.00) 		0.647
(0.934) 		0.938
(1.00) 		0.0432
(0.22) 		0.0823
(0.31) 		0.00579
(0.0689) 		9e-05
(0.00485) 		0.145
(0.424) 		0.185
(0.485) 		0.251
(0.577) 		0.534
(0.854)
KIRREL2 15 (3%) 474 0.817
(1.00) 		0.738
(1.00) 		0.0069
(0.0763) 		0.4
(0.725) 		0.303
(0.633) 		0.456
(0.783) 		0.246
(0.572) 		0.00057
(0.0169) 		0.206
(0.513) 		0.0283
(0.171) 		0.697
(0.97) 		0.767
(1.00)
ASNSD1 10 (2%) 479 0.0315
(0.182) 		0.0627
(0.272) 		0.0125
(0.11) 		0.0282
(0.171) 		0.477
(0.806) 		0.221
(0.535) 		0.0976
(0.343) 		0.332
(0.66) 		0.218
(0.531) 		0.768
(1.00)
RNF111 16 (3%) 473 0.005
(0.0638) 		0.00447
(0.061) 		0.0538
(0.252) 		0.919
(1.00) 		0.111
(0.369) 		0.83
(1.00) 		0.984
(1.00) 		0.0109
(0.101) 		0.713
(0.983) 		0.508
(0.832)
SOX7 12 (2%) 477 0.0307
(0.18) 		0.0619
(0.27) 		0.0302
(0.178) 		0.82
(1.00) 		0.0844
(0.314) 		0.07
(0.285) 		0.366
(0.696) 		0.0392
(0.208) 		0.927
(1.00) 		0.529
(0.849) 		0.78
(1.00) 		0.139
(0.416)
XPOT 11 (2%) 478 0.12
(0.386) 		0.254
(0.577) 		0.00189
(0.0361) 		0.113
(0.373) 		0.381
(0.71) 		0.328
(0.656) 		0.00496
(0.0637) 		0.0773
(0.3) 		0.418
(0.746) 		0.332
(0.659) 		0.168
(0.462) 		0.0263
(0.164)
SMARCA4 33 (7%) 456 0.586
(0.89) 		0.529
(0.849) 		0.00095
(0.0235) 		0.213
(0.522) 		0.784
(1.00) 		0.74
(1.00) 		0.102
(0.353) 		0.00095
(0.0235) 		0.138
(0.414) 		0.0274
(0.168) 		0.0862
(0.317) 		0.442
(0.769)
RUFY1 14 (3%) 475 0.164
(0.457) 		0.559
(0.871) 		0.868
(1.00) 		0.499
(0.825) 		0.00054
(0.0164) 		0.00057
(0.0169) 		0.00232
(0.0415) 		0.0631
(0.273)
ARID2 37 (8%) 452 0.26
(0.584) 		0.0144
(0.119) 		0.00417
(0.0588) 		0.344
(0.671) 		0.0929
(0.333) 		0.723
(0.991) 		0.25
(0.576) 		0.0223
(0.152) 		0.473
(0.801) 		0.445
(0.772) 		0.164
(0.457) 		0.613
(0.913)
OR2M3 17 (3%) 472 0.136
(0.412) 		0.16
(0.451) 		0.00507
(0.0641) 		0.147
(0.429) 		0.0357
(0.196) 		0.019
(0.138) 		0.473
(0.801) 		0.0637
(0.274) 		0.359
(0.687) 		0.768
(1.00)
TMEM169 14 (3%) 475 0.0896
(0.326) 		0.4
(0.725) 		0.628
(0.925) 		0.81
(1.00) 		0.149
(0.431) 		0.00738
(0.0795) 		0.0209
(0.146) 		0.0242
(0.158) 		0.326
(0.655) 		0.731
(0.998)
CDK17 11 (2%) 478 0.00161
(0.0333) 		0.554
(0.87) 		0.03
(0.177) 		0.635
(0.927) 		0.733
(0.999) 		0.51
(0.833) 		0.498
(0.824) 		0.0105
(0.0983) 		0.76
(1.00) 		0.773
(1.00) 		0.135
(0.411) 		1
(1.00)
LNX2 18 (4%) 471 0.0038
(0.056) 		0.00444
(0.061) 		0.142
(0.419) 		0.511
(0.833) 		0.65
(0.937) 		0.75
(1.00) 		0.834
(1.00) 		0.00651
(0.074) 		0.689
(0.967) 		0.388
(0.715)
C5ORF34 12 (2%) 477 0.0641
(0.275) 		0.184
(0.484) 		0.167
(0.462) 		0.432
(0.76) 		0.0138
(0.116) 		0.105
(0.358) 		0.231
(0.551) 		0.0107
(0.0997) 		0.584
(0.888) 		0.0125
(0.11) 		0.783
(1.00) 		0.14
(0.416)
SYT1 13 (3%) 476 0.026
(0.164) 		0.936
(1.00) 		0.297
(0.626) 		0.709
(0.98) 		0.0877
(0.321) 		0.00643
(0.0737) 		0.0146
(0.12) 		0.311
(0.638)
TTF1 11 (2%) 478 0.00498
(0.0638) 		0.0772
(0.3) 		0.846
(1.00) 		1
(1.00) 		0.0905
(0.328) 		0.00359
(0.0545) 		0.434
(0.761) 		0.0395
(0.209) 		0.252
(0.577) 		0.563
(0.873)
PLCH2 19 (4%) 470 0.309
(0.637) 		0.482
(0.81) 		0.25
(0.576) 		0.0935
(0.335) 		0.00376
(0.0557) 		0.00171
(0.0343) 		0.00072
(0.0198) 		0.115
(0.376) 		1
(1.00) 		0.794
(1.00)
RNASEL 14 (3%) 475 0.309
(0.637) 		0.557
(0.87) 		0.0313
(0.182) 		0.64
(0.928) 		0.0209
(0.146) 		0.162
(0.455) 		0.144
(0.423) 		0.195
(0.498) 		0.514
(0.835) 		0.0142
(0.118) 		0.327
(0.656) 		0.55
(0.867)
ATP8B1 28 (6%) 461 0.159
(0.451) 		0.689
(0.967) 		0.00296
(0.0487) 		0.0714
(0.288) 		0.00096
(0.0237) 		0.0769
(0.299) 		0.00938
(0.0912) 		0.118
(0.383) 		0.569
(0.876) 		0.0652
(0.276) 		0.232
(0.552) 		0.414
(0.741)
ITGAV 17 (3%) 472 0.48
(0.808) 		1
(1.00) 		0.0087
(0.0868) 		0.177
(0.477) 		0.167
(0.462) 		0.392
(0.717) 		0.0104
(0.0975) 		0.00421
(0.0591) 		0.307
(0.636) 		0.184
(0.484) 		0.267
(0.593) 		0.869
(1.00)
ENPP3 11 (2%) 478 0.00829
(0.0848) 		0.186
(0.487) 		0.00218
(0.0397) 		0.078
(0.301) 		0.603
(0.905) 		0.693
(0.969) 		0.329
(0.656) 		0.007
(0.0771) 		0.291
(0.619) 		0.0654
(0.276) 		0.135
(0.411) 		0.449
(0.775)
CHEK2 10 (2%) 479 0.127
(0.396) 		0.198
(0.5) 		0.00127
(0.0288) 		0.0305
(0.179) 		0.343
(0.671) 		0.0337
(0.188) 		0.321
(0.65) 		0.101
(0.351)
ENTPD4 18 (4%) 471 0.121
(0.387) 		0.251
(0.577) 		0.00564
(0.0679) 		0.433
(0.76) 		0.199
(0.503) 		0.887
(1.00) 		0.24
(0.563) 		7e-05
(0.00408) 		0.129
(0.4) 		0.0336
(0.188) 		0.0648
(0.275) 		0.87
(1.00)
ABLIM3 18 (4%) 471 0.00202
(0.0376) 		0.0033
(0.0516) 		0.0101
(0.0962) 		0.935
(1.00) 		0.188
(0.489) 		0.867
(1.00) 		0.623
(0.921) 		0.0979
(0.343) 		0.748
(1.00) 		0.0576
(0.262) 		0.666
(0.951) 		0.295
(0.624)
PCDH12 20 (4%) 469 0.00916
(0.0899) 		0.31
(0.637) 		0.00064
(0.0182) 		0.533
(0.853) 		0.583
(0.888) 		0.147
(0.428) 		0.435
(0.763) 		0.00419
(0.059) 		0.232
(0.552) 		0.14
(0.417)
SLC7A10 8 (2%) 481 0.00482
(0.0628) 		0.291
(0.619) 		0.904
(1.00) 		0.723
(0.991) 		0.0662
(0.277) 		8e-05
(0.00452) 		0.636
(0.927) 		0.00883
(0.0875) 		0.135
(0.411) 		0.449
(0.775)
GAB1 15 (3%) 474 0.00897
(0.0885) 		0.0224
(0.152) 		0.178
(0.477) 		0.584
(0.888) 		1
(1.00) 		0.486
(0.814) 		0.247
(0.573) 		0.188
(0.49) 		0.959
(1.00) 		0.0337
(0.188) 		0.147
(0.427) 		0.868
(1.00)
KIF2C 12 (2%) 477 0.0159
(0.125) 		0.834
(1.00) 		0.288
(0.617) 		1
(1.00) 		0.0656
(0.276) 		0.0324
(0.184) 		0.857
(1.00) 		0.0484
(0.235) 		0.113
(0.373) 		0.143
(0.422)
PVRL4 10 (2%) 479 0.0315
(0.182) 		0.00305
(0.0494) 		0.487
(0.814) 		1
(1.00) 		0.221
(0.535) 		0.07
(0.285) 		0.845
(1.00) 		0.175
(0.474) 		0.635
(0.927) 		0.0175
(0.132)
POLM 12 (2%) 477 0.0158
(0.125) 		0.149
(0.432) 		0.628
(0.925) 		0.287
(0.615) 		0.00818
(0.0843) 		5e-05
(0.00318) 		0.758
(1.00) 		0.0901
(0.327)
RCSD1 16 (3%) 473 0.31
(0.637) 		0.556
(0.87) 		0.121
(0.387) 		0.534
(0.854) 		0.876
(1.00) 		0.935
(1.00) 		0.242
(0.567) 		0.0285
(0.172) 		0.114
(0.374) 		0.0464
(0.23) 		0.045
(0.225) 		0.115
(0.376)
CSNK1D 15 (3%) 474 0.0161
(0.126) 		0.0394
(0.209) 		0.056
(0.257) 		0.686
(0.964) 		0.301
(0.63) 		0.768
(1.00) 		0.335
(0.663) 		0.0536
(0.251) 		0.0957
(0.339) 		0.0255
(0.162) 		0.0952
(0.338) 		0.766
(1.00)
ARMCX5 8 (2%) 481 0.123
(0.389) 		0.0133
(0.114) 		0.201
(0.507) 		0.323
(0.652) 		0.618
(0.916) 		0.483
(0.81) 		0.952
(1.00) 		0.0494
(0.238) 		0.503
(0.829) 		0.0449
(0.225)
KDM5C 23 (5%) 466 0.00328
(0.0515) 		0.00013
(0.00626) 		0.294
(0.623) 		0.843
(1.00) 		0.626
(0.924) 		0.23
(0.55) 		0.84
(1.00) 		0.0462
(0.229) 		0.949
(1.00) 		0.0741
(0.292)
ATP8B2 18 (4%) 471 0.0261
(0.164) 		0.253
(0.577) 		0.00157
(0.0327) 		0.246
(0.571) 		0.223
(0.538) 		0.0873
(0.32) 		0.735
(1.00) 		0.0257
(0.162) 		0.59
(0.895) 		0.056
(0.257) 		0.27
(0.595) 		1
(1.00)
RIF1 41 (8%) 448 0.0222
(0.151) 		0.0695
(0.284) 		0.0137
(0.115) 		0.777
(1.00) 		0.0888
(0.324) 		0.261
(0.584) 		0.379
(0.708) 		0.00329
(0.0515) 		0.0964
(0.34) 		0.0814
(0.308) 		0.131
(0.404) 		0.614
(0.914)
LRRC23 9 (2%) 480 0.941
(1.00) 		0.477
(0.806) 		0.31
(0.637) 		0.512
(0.834) 		0.0185
(0.136) 		0.0271
(0.167) 		0.0385
(0.206) 		0.0678
(0.28) 		0.7
(0.972) 		0.87
(1.00)
SF1 16 (3%) 473 0.074
(0.292) 		0.04
(0.21) 		0.188
(0.488) 		0.514
(0.835) 		0.162
(0.455) 		0.707
(0.978) 		0.889
(1.00) 		0.0106
(0.0987) 		0.436
(0.764) 		0.0154
(0.124) 		0.931
(1.00) 		0.266
(0.591)
BTNL3 8 (2%) 481 0.0046
(0.0616) 		0.203
(0.509) 		0.176
(0.476) 		0.29
(0.619) 		0.0109
(0.101) 		5e-05
(0.00318) 		0.328
(0.656) 		0.144
(0.423)
RPGRIP1L 18 (4%) 471 0.00267
(0.0455) 		0.31
(0.637) 		0.0301
(0.177) 		0.92
(1.00) 		0.164
(0.458) 		0.768
(1.00) 		0.663
(0.949) 		0.105
(0.359) 		0.754
(1.00) 		0.122
(0.387) 		0.0259
(0.163) 		0.365
(0.694)
CACHD1 27 (6%) 462 0.00359
(0.0545) 		0.19
(0.491) 		0.0176
(0.133) 		0.182
(0.483) 		0.0424
(0.218) 		0.693
(0.969) 		0.783
(1.00) 		0.0898
(0.326) 		0.76
(1.00) 		0.214
(0.524) 		0.303
(0.633) 		1
(1.00)
ULK1 11 (2%) 478 0.0683
(0.281) 		0.0194
(0.139) 		0.206
(0.512) 		0.918
(1.00) 		0.00208
(0.0384) 		0.0001
(0.00522) 		0.171
(0.467) 		0.483
(0.81)
TOX 18 (4%) 471 0.0455
(0.227) 		0.186
(0.487) 		0.0269
(0.166) 		0.494
(0.821) 		0.435
(0.762) 		0.398
(0.723) 		0.324
(0.654) 		0.0398
(0.21) 		0.175
(0.475) 		0.24
(0.563) 		0.168
(0.462) 		0.446
(0.773)
ABCF3 16 (3%) 473 0.0647
(0.275) 		0.0136
(0.115) 		0.012
(0.108) 		0.882
(1.00) 		0.803
(1.00) 		0.839
(1.00) 		0.0599
(0.268) 		0.0139
(0.116) 		0.255
(0.577) 		0.32
(0.649) 		0.0964
(0.34) 		0.87
(1.00)
GRM7 30 (6%) 459 0.322
(0.65) 		1
(1.00) 		0.0318
(0.183) 		0.915
(1.00) 		0.565
(0.873) 		0.506
(0.832) 		0.192
(0.495) 		0.218
(0.532) 		0.0142
(0.117) 		0.434
(0.761) 		0.0276
(0.168) 		0.339
(0.666)
DNAJC11 12 (2%) 477 0.00597
(0.0702) 		0.25
(0.577) 		0.0128
(0.111) 		0.776
(1.00) 		0.382
(0.711) 		0.911
(1.00) 		0.823
(1.00) 		0.0377
(0.203) 		0.141
(0.418) 		0.103
(0.354)
CORO1C 8 (2%) 481 0.756
(1.00) 		0.496
(0.822) 		0.545
(0.864) 		0.168
(0.462) 		0.0213
(0.147) 		0.0224
(0.152) 		0.00493
(0.0634) 		0.358
(0.687) 		0.872
(1.00) 		0.692
(0.969)
SPANXC 4 (1%) 485 0.339
(0.666) 		0.111
(0.369) 		0.337
(0.665) 		0.298
(0.627) 		0.0163
(0.127) 		0.0134
(0.114) 		0.741
(1.00) 		0.049
(0.237)
YES1 10 (2%) 479 0.286
(0.615) 		0.296
(0.626) 		0.154
(0.44) 		0.133
(0.407) 		0.0265
(0.165) 		0.00543
(0.0666) 		0.0492
(0.237) 		0.126
(0.394) 		0.194
(0.497) 		0.219
(0.532)
ZNF721 17 (3%) 472 0.00273
(0.046) 		0.31
(0.638) 		5e-05
(0.00318) 		0.06
(0.268) 		0.0221
(0.151) 		0.77
(1.00) 		0.3
(0.629) 		0.0509
(0.242) 		0.073
(0.291) 		0.185
(0.485) 		0.138
(0.414) 		1
(1.00)
KIFAP3 9 (2%) 480 0.00458
(0.0614) 		0.253
(0.577) 		0.153
(0.439) 		0.895
(1.00) 		0.177
(0.477) 		0.032
(0.183) 		0.491
(0.817) 		0.0242
(0.158)
BAZ2B 19 (4%) 470 0.0264
(0.164) 		0.253
(0.577) 		0.154
(0.44) 		0.832
(1.00) 		0.185
(0.485) 		0.61
(0.911) 		0.301
(0.63) 		0.0206
(0.145) 		0.972
(1.00) 		0.0376
(0.203) 		0.628
(0.925) 		0.312
(0.64)
DDB1 15 (3%) 474 0.0729
(0.291) 		0.0406
(0.212) 		0.0117
(0.106) 		0.248
(0.573) 		0.182
(0.483) 		0.781
(1.00) 		0.569
(0.876) 		0.0155
(0.124) 		0.288
(0.617) 		0.137
(0.413)
ADAM30 13 (3%) 476 0.255
(0.578) 		0.0462
(0.229) 		0.00727
(0.0787) 		0.197
(0.5) 		0.0924
(0.332) 		0.439
(0.766) 		0.33
(0.657) 		0.0138
(0.115) 		0.954
(1.00) 		0.0931
(0.334) 		1
(1.00) 		0.894
(1.00)
CCR2 7 (1%) 482 0.281
(0.609) 		1
(1.00) 		0.238
(0.56) 		0.663
(0.949) 		0.018
(0.134) 		0.0178
(0.133) 		0.0109
(0.101) 		0.571
(0.878)
EFEMP1 20 (4%) 469 0.273
(0.599) 		0.184
(0.484) 		0.72
(0.988) 		0.108
(0.363) 		0.00126
(0.0287) 		0.191
(0.493) 		0.0378
(0.203) 		0.0218
(0.149) 		0.104
(0.356) 		0.348
(0.676) 		0.411
(0.737) 		0.656
(0.943)
RPS6KA3 16 (3%) 473 0.00541
(0.0664) 		0.244
(0.569) 		0.0121
(0.108) 		0.12
(0.386) 		0.733
(0.999) 		0.148
(0.43) 		0.0872
(0.32) 		0.0267
(0.165) 		0.837
(1.00) 		0.167
(0.462)
MIA3 21 (4%) 468 0.071
(0.288) 		0.828
(1.00) 		0.00036
(0.0124) 		0.238
(0.56) 		0.271
(0.596) 		0.886
(1.00) 		0.0602
(0.268) 		0.0285
(0.172) 		0.836
(1.00) 		0.118
(0.383) 		9e-05
(0.00485) 		0.189
(0.49)
EFHC2 17 (3%) 472 0.022
(0.151) 		0.0445
(0.224) 		0.0571
(0.26) 		0.936
(1.00) 		0.166
(0.46) 		0.934
(1.00) 		0.623
(0.921) 		0.00923
(0.0902) 		0.548
(0.866) 		0.0657
(0.276) 		0.139
(0.415) 		0.563
(0.873)
PALLD 12 (2%) 477 0.0152
(0.123) 		0.178
(0.477) 		0.227
(0.544) 		1
(1.00) 		0.0821
(0.31) 		0.133
(0.407) 		0.732
(0.999) 		0.0102
(0.0968) 		0.599
(0.902) 		0.0694
(0.284) 		0.00448
(0.061) 		0.694
(0.969)
TAT 15 (3%) 474 0.00602
(0.0706) 		0.253
(0.577) 		8e-05
(0.00452) 		0.367
(0.696) 		0.428
(0.755) 		0.467
(0.793) 		0.248
(0.574) 		0.0777
(0.3) 		0.291
(0.619) 		0.205
(0.512) 		0.00466
(0.0619) 		1
(1.00)
SLC22A16 15 (3%) 474 0.0742
(0.292) 		0.833
(1.00) 		7e-05
(0.00408) 		0.0665
(0.277) 		0.425
(0.752) 		0.781
(1.00) 		0.0325
(0.184) 		4e-05
(0.00269) 		0.889
(1.00) 		0.174
(0.472) 		0.254
(0.577) 		0.563
(0.873)
RNF10 15 (3%) 474 0.00915
(0.0898) 		0.0154
(0.124) 		0.0032
(0.0508) 		0.113
(0.373) 		0.299
(0.628) 		0.196
(0.499) 		0.839
(1.00) 		0.103
(0.354) 		0.53
(0.85) 		0.429
(0.757) 		0.484
(0.812) 		0.111
(0.369)
OR5K2 11 (2%) 478 0.00788
(0.0831) 		0.0726
(0.29) 		0.775
(1.00) 		0.917
(1.00) 		0.00348
(0.0537) 		0.00489
(0.0634) 		0.324
(0.654) 		0.419
(0.747) 		0.19
(0.492) 		0.672
(0.955)
TNNI3K 26 (5%) 463 0.0292
(0.175) 		0.0164
(0.127) 		0.052
(0.246) 		1
(1.00) 		0.196
(0.498) 		1
(1.00) 		0.753
(1.00) 		0.00904
(0.089) 		0.233
(0.553) 		0.404
(0.729) 		0.464
(0.79) 		0.489
(0.816)
DHX36 17 (3%) 472 0.0121
(0.108) 		0.297
(0.626) 		0.166
(0.46) 		0.557
(0.87) 		0.0223
(0.152) 		3e-05
(0.0022) 		0.693
(0.969) 		0.124
(0.391) 		0.112
(0.372) 		0.432
(0.76)
DOCK8 22 (4%) 467 0.432
(0.759) 		1
(1.00) 		0.00179
(0.0351) 		0.377
(0.706) 		0.389
(0.716) 		0.301
(0.63) 		0.361
(0.69) 		0.00036
(0.0124) 		0.154
(0.44) 		0.128
(0.399) 		0.0108
(0.1) 		0.951
(1.00)
AGFG2 12 (2%) 477 0.0729
(0.291) 		0.0399
(0.21) 		0.015
(0.122) 		0.818
(1.00) 		0.292
(0.621) 		0.0917
(0.33) 		0.435
(0.763) 		0.0202
(0.143) 		0.5
(0.827) 		0.0788
(0.302) 		0.873
(1.00) 		0.842
(1.00)
VWA5A 15 (3%) 474 0.0334
(0.187) 		0.552
(0.869) 		0.0461
(0.229) 		0.321
(0.65) 		1
(1.00) 		0.57
(0.877) 		0.905
(1.00) 		0.155
(0.443) 		0.202
(0.507) 		0.00126
(0.0287) 		0.0841
(0.314) 		0.0606
(0.268)
BRD4 21 (4%) 468 0.178
(0.478) 		0.0183
(0.135) 		0.00234
(0.0416) 		0.283
(0.611) 		0.0828
(0.312) 		0.733
(0.999) 		0.546
(0.865) 		0.00305
(0.0494) 		0.384
(0.712) 		0.375
(0.705) 		0.0732
(0.291) 		0.849
(1.00)
PSMA2 6 (1%) 483 0.0223
(0.152) 		0.0123
(0.109) 		0.122
(0.388) 		1
(1.00) 		0.103
(0.356) 		0.00523
(0.0651) 		0.407
(0.732) 		0.179
(0.479)
ERCC6L 16 (3%) 473 0.00172
(0.0343) 		0.546
(0.865) 		0.00073
(0.0199) 		0.437
(0.764) 		0.425
(0.753) 		0.922
(1.00) 		0.371
(0.7) 		0.0399
(0.21) 		0.295
(0.624) 		0.115
(0.376) 		0.136
(0.411) 		1
(1.00)
VEZF1 7 (1%) 482 0.0616
(0.269) 		0.182
(0.483) 		0.00499
(0.0638) 		0.336
(0.664) 		0.0212
(0.147) 		3e-05
(0.0022) 		0.181
(0.481) 		0.0594
(0.267)
CYSLTR2 17 (3%) 472 0.0412
(0.214) 		0.556
(0.87) 		0.438
(0.764) 		0.881
(1.00) 		0.341
(0.668) 		0.0241
(0.157) 		0.345
(0.672) 		0.371
(0.701) 		0.0497
(0.239) 		0.0572
(0.261) 		0.231
(0.551) 		0.491
(0.817)
PER3 18 (4%) 471 0.0367
(0.2) 		0.252
(0.577) 		0.0003
(0.0109) 		0.257
(0.58) 		0.632
(0.927) 		0.195
(0.498) 		0.116
(0.378) 		0.0104
(0.0975) 		0.257
(0.58) 		0.485
(0.812) 		0.137
(0.413) 		1
(1.00)
HPSE 11 (2%) 478 0.00782
(0.0826) 		0.0945
(0.337) 		0.901
(1.00) 		0.642
(0.929) 		0.00341
(0.0529) 		0.0156
(0.124) 		0.324
(0.653) 		0.0545
(0.253) 		0.268
(0.594) 		0.129
(0.4)
C9ORF71 4 (1%) 485 0.122
(0.388) 		0.389
(0.716) 		0.0185
(0.136) 		0.18
(0.481) 		0.0374
(0.202) 		0.00554
(0.0674) 		0.598
(0.901) 		0.247
(0.573)
UPF3A 9 (2%) 480 0.0124
(0.11) 		0.637
(0.927) 		0.847
(1.00) 		1
(1.00) 		0.148
(0.431) 		0.00378
(0.0559) 		0.735
(1.00) 		0.0201
(0.143)
ZNF585A 19 (4%) 470 0.00707
(0.0774) 		0.187
(0.487) 		0.00067
(0.0187) 		0.437
(0.764) 		0.937
(1.00) 		0.933
(1.00) 		0.224
(0.54) 		0.0285
(0.172) 		0.624
(0.923) 		0.139
(0.415)
ANKRD10 9 (2%) 480 0.127
(0.396) 		0.713
(0.984) 		0.903
(1.00) 		0.158
(0.449) 		0.00563
(0.0679) 		0.0558
(0.257) 		0.047
(0.231) 		0.0366
(0.199)
GDE1 6 (1%) 483 0.627
(0.925) 		0.517
(0.839) 		0.0617
(0.27) 		0.506
(0.832) 		0.0459
(0.228) 		0.0365
(0.199) 		0.0332
(0.186) 		0.051
(0.243)
ADM 6 (1%) 483 0.0216
(0.149) 		0.556
(0.87) 		0.548
(0.865) 		0.717
(0.987) 		0.132
(0.405) 		0.0152
(0.123) 		0.636
(0.927) 		0.0171
(0.13)
ZNF182 16 (3%) 473 0.0057
(0.0684) 		0.88
(1.00) 		0.00846
(0.0857) 		0.368
(0.697) 		0.42
(0.748) 		0.396
(0.721) 		0.268
(0.594) 		0.0898
(0.326) 		0.241
(0.565) 		0.0386
(0.206)
DLL3 7 (1%) 482 0.0647
(0.275) 		1
(1.00) 		0.00969
(0.0935) 		0.557
(0.87) 		0.239
(0.562) 		1
(1.00) 		0.457
(0.783) 		0.0269
(0.166) 		0.437
(0.764) 		0.0334
(0.187)
MCART1 13 (3%) 476 0.00187
(0.0359) 		0.0379
(0.204) 		1
(1.00) 		0.0805
(0.306) 		0.0147
(0.121) 		0.0759
(0.296) 		0.499
(0.826) 		0.225
(0.541) 		0.425
(0.753) 		0.322
(0.651)
USP28 28 (6%) 461 0.115
(0.375) 		0.135
(0.41) 		0.0519
(0.246) 		0.4
(0.726) 		0.0412
(0.214) 		0.809
(1.00) 		0.648
(0.935) 		0.0261
(0.164) 		0.553
(0.87) 		0.261
(0.584) 		0.867
(1.00) 		0.0389
(0.207)
FER 17 (3%) 472 0.136
(0.411) 		0.659
(0.945) 		0.044
(0.223) 		1
(1.00) 		0.0126
(0.111) 		0.941
(1.00) 		0.883
(1.00) 		0.0178
(0.133) 		0.59
(0.895) 		0.307
(0.637) 		0.303
(0.633) 		0.757
(1.00)
MARVELD2 11 (2%) 478 0.00464
(0.0619) 		0.128
(0.398) 		0.267
(0.593) 		0.695
(0.969) 		0.0217
(0.149) 		0.00019
(0.00802) 		0.162
(0.455) 		0.376
(0.705)
ATAD2B 18 (4%) 471 0.289
(0.617) 		0.656
(0.943) 		0.0337
(0.188) 		0.131
(0.403) 		0.313
(0.641) 		0.677
(0.958) 		0.00965
(0.0933) 		0.0131
(0.113) 		0.235
(0.556) 		0.185
(0.485) 		0.353
(0.681) 		0.886
(1.00)
DSC2 15 (3%) 474 0.0522
(0.247) 		0.43
(0.758) 		0.0791
(0.302) 		1
(1.00) 		0.0345
(0.191) 		0.043
(0.219) 		0.359
(0.687) 		0.759
(1.00) 		0.0132
(0.113) 		0.869
(1.00)
C18ORF19 9 (2%) 480 0.0157
(0.124) 		0.0393
(0.209) 		0.461
(0.788) 		0.0772
(0.3) 		0.903
(1.00) 		0.641
(0.928) 		0.285
(0.613) 		0.228
(0.547) 		0.757
(1.00) 		0.0442
(0.223)
SLC11A2 9 (2%) 480 0.0325
(0.184) 		0.555
(0.87) 		0.00165
(0.0337) 		0.381
(0.711) 		0.139
(0.415) 		0.719
(0.988) 		0.29
(0.619) 		0.00939
(0.0912) 		0.405
(0.731) 		0.5
(0.826)
PTPRJ 18 (4%) 471 0.0328
(0.185) 		0.0394
(0.209) 		0.128
(0.399) 		0.725
(0.993) 		0.736
(1.00) 		0.101
(0.35) 		0.306
(0.635) 		0.00753
(0.0807) 		0.4
(0.725) 		0.0533
(0.25) 		1
(1.00) 		1
(1.00)
EHHADH 15 (3%) 474 0.0651
(0.276) 		0.25
(0.577) 		0.107
(0.361) 		0.0247
(0.159) 		0.083
(0.312) 		0.246
(0.571) 		0.0121
(0.108) 		0.251
(0.577) 		0.28
(0.608) 		0.0155
(0.124) 		0.666
(0.951) 		0.575
(0.881)
ESCO1 17 (3%) 472 0.005
(0.0638) 		0.105
(0.358) 		0.00327
(0.0514) 		0.641
(0.928) 		0.275
(0.602) 		0.159
(0.45) 		0.489
(0.816) 		0.217
(0.529) 		0.764
(1.00) 		0.306
(0.636) 		0.00352
(0.054) 		0.576
(0.883)
ANKRD23 5 (1%) 484 0.388
(0.715) 		0.385
(0.713) 		0.165
(0.459) 		1
(1.00) 		0.00374
(0.0556) 		0.00018
(0.00778) 		0.325
(0.655) 		0.0426
(0.218)
ST6GALNAC3 13 (3%) 476 0.165
(0.459) 		0.194
(0.497) 		0.507
(0.832) 		0.529
(0.849) 		0.00432
(0.06) 		0.00057
(0.0169) 		0.0241
(0.157) 		0.291
(0.62) 		0.647
(0.933) 		0.431
(0.758)
NHLRC2 9 (2%) 480 0.127
(0.396) 		0.18
(0.48) 		0.04
(0.21) 		0.0409
(0.213) 		0.401
(0.727) 		0.392
(0.717) 		0.205
(0.512) 		0.635
(0.927) 		0.00805
(0.0838) 		0.129
(0.4)
CT47B1 8 (2%) 481 0.81
(1.00) 		1
(1.00) 		0.614
(0.913) 		0.191
(0.492) 		0.0213
(0.148) 		0.0303
(0.178) 		0.0209
(0.146) 		0.238
(0.56) 		1
(1.00) 		0.217
(0.529)
WDR5B 13 (3%) 476 0.484
(0.811) 		0.291
(0.619) 		0.13
(0.401) 		0.159
(0.45) 		0.0001
(0.00522) 		0.0186
(0.136) 		0.118
(0.382) 		0.305
(0.635) 		0.0444
(0.224) 		0.586
(0.891) 		0.931
(1.00) 		0.695
(0.969)
IFIH1 16 (3%) 473 0.0163
(0.127) 		0.0621
(0.271) 		0.0552
(0.256) 		0.0251
(0.161) 		0.424
(0.752) 		0.543
(0.863) 		0.0893
(0.325) 		0.00499
(0.0638) 		0.118
(0.382) 		0.1
(0.348) 		0.185
(0.485) 		0.684
(0.963)
CRTC1 13 (3%) 476 0.00747
(0.0803) 		0.0863
(0.317) 		0.196
(0.499) 		0.564
(0.873) 		0.00286
(0.0477) 		1e-05
(0.00111) 		0.336
(0.664) 		0.893
(1.00) 		0.137
(0.413) 		1
(1.00)
CASP1 6 (1%) 483 0.0526
(0.248) 		0.0372
(0.201) 		0.797
(1.00) 		0.772
(1.00) 		0.35
(0.677) 		0.00301
(0.0491) 		0.506
(0.832) 		0.0074
(0.0797)
PTPRB 18 (4%) 471 0.0331
(0.186) 		0.0633
(0.273) 		0.00043
(0.014) 		0.294
(0.623) 		0.0693
(0.284) 		0.107
(0.361) 		0.67
(0.954) 		0.041
(0.213) 		0.399
(0.725) 		0.541
(0.861) 		0.463
(0.789) 		0.485
(0.812)
ATIC 14 (3%) 475 0.12
(0.386) 		0.0132
(0.113) 		0.0124
(0.11) 		0.399
(0.725) 		0.926
(1.00) 		0.194
(0.497) 		0.258
(0.58) 		0.0365
(0.199) 		0.411
(0.738) 		0.354
(0.683) 		0.783
(1.00) 		1
(1.00)
POLD3 11 (2%) 478 0.00456
(0.0614) 		0.114
(0.374) 		0.0936
(0.335) 		0.916
(1.00) 		0.00918
(0.09) 		0.00081
(0.0212) 		1
(1.00) 		0.373
(0.704) 		0.256
(0.578) 		0.565
(0.873)
ZBTB33 16 (3%) 473 0.274
(0.6) 		0.253
(0.577) 		0.00868
(0.0867) 		0.25
(0.577) 		0.347
(0.675) 		0.61
(0.911) 		0.471
(0.799) 		0.00022
(0.00882) 		0.0965
(0.34) 		0.351
(0.678) 		0.00438
(0.0606) 		1
(1.00)
THUMPD3 12 (2%) 477 0.0651
(0.276) 		1
(1.00) 		0.0231
(0.154) 		0.127
(0.396) 		0.0418
(0.215) 		0.245
(0.569) 		0.233
(0.554) 		0.0991
(0.346) 		0.438
(0.765) 		0.074
(0.292) 		0.0395
(0.209) 		0.381
(0.71)
ZBTB5 7 (1%) 482 0.00996
(0.0953) 		0.139
(0.416) 		0.06
(0.268) 		0.213
(0.523) 		0.00053
(0.0162) 		0.00064
(0.0182) 		0.281
(0.609) 		0.138
(0.414) 		0.137
(0.413) 		1
(1.00)
EMR3 17 (3%) 472 0.00557
(0.0675) 		0.0712
(0.288) 		0.0853
(0.316) 		0.739
(1.00) 		0.834
(1.00) 		1
(1.00) 		0.103
(0.354) 		0.00827
(0.0847) 		0.332
(0.659) 		0.00168
(0.034)
OSR1 4 (1%) 485 0.867
(1.00) 		1
(1.00) 		0.611
(0.912) 		1
(1.00) 		0.0293
(0.175) 		0.00231
(0.0413) 		0.0665
(0.277) 		0.0208
(0.145)
ASB11 8 (2%) 481 0.00326
(0.0514) 		0.113
(0.372) 		0.0786
(0.302) 		0.663
(0.949) 		0.00088
(0.0225) 		0.00027
(0.0101) 		0.33
(0.657) 		0.468
(0.795)
C7ORF50 5 (1%) 484 0.384
(0.712) 		0.0373
(0.201) 		0.685
(0.963) 		0.328
(0.656) 		0.0223
(0.152) 		0.00202
(0.0376) 		0.127
(0.396) 		0.262
(0.586)
CCDC66 13 (3%) 476 0.0634
(0.273) 		0.349
(0.677) 		0.00203
(0.0377) 		0.479
(0.807) 		0.911
(1.00) 		0.366
(0.695) 		0.143
(0.421) 		9e-05
(0.00485) 		0.861
(1.00) 		0.28
(0.608) 		0.0238
(0.157) 		0.868
(1.00)
MAP2K1 12 (2%) 477 0.408
(0.734) 		0.739
(1.00) 		0.0311
(0.181) 		0.18
(0.481) 		0.72
(0.988) 		0.839
(1.00) 		0.00723
(0.0786) 		0.353
(0.68) 		0.271
(0.596) 		0.0191
(0.138)
UGT1A1 11 (2%) 478 0.229
(0.549) 		0.255
(0.577) 		0.00196
(0.0371) 		0.505
(0.831) 		1
(1.00) 		0.223
(0.537) 		0.792
(1.00) 		0.00612
(0.0715) 		0.713
(0.984) 		0.379
(0.708) 		0.00869
(0.0867) 		1
(1.00)
NCR3 5 (1%) 484 0.176
(0.476) 		0.0383
(0.205) 		0.284
(0.612) 		0.0894
(0.325) 		0.116
(0.377) 		0.0149
(0.121) 		0.684
(0.963) 		0.00361
(0.0547)
GDA 7 (1%) 482 0.216
(0.528) 		0.394
(0.719) 		1
(1.00) 		0.774
(1.00) 		0.0426
(0.218) 		0.0145
(0.119) 		0.034
(0.189) 		0.199
(0.503) 		1
(1.00) 		0.269
(0.594)
STAT5B 13 (3%) 476 0.00879
(0.0873) 		0.072
(0.289) 		0.00272
(0.046) 		0.606
(0.907) 		0.0535
(0.251) 		0.317
(0.645) 		0.406
(0.731) 		0.0235
(0.156) 		0.555
(0.87) 		0.354
(0.682) 		0.355
(0.684) 		0.601
(0.904)
MCF2 32 (7%) 457 0.35
(0.678) 		0.0313
(0.182) 		0.0114
(0.104) 		0.0935
(0.335) 		0.289
(0.617) 		0.963
(1.00) 		0.0858
(0.317) 		0.0307
(0.18) 		0.828
(1.00) 		0.104
(0.356) 		0.0861
(0.317) 		1
(1.00)
PARG 12 (2%) 477 0.0459
(0.228) 		0.617
(0.915) 		0.27
(0.595) 		0.761
(1.00) 		0.0342
(0.19) 		0.00047
(0.0149) 		0.35
(0.678) 		0.396
(0.721)
OR6A2 8 (2%) 481 0.05
(0.24) 		0.327
(0.656) 		0.029
(0.174) 		0.139
(0.415) 		0.0262
(0.164) 		0.121
(0.387) 		0.338
(0.666) 		0.783
(1.00)
SCARA5 15 (3%) 474 0.29
(0.618) 		0.162
(0.455) 		0.177
(0.477) 		0.0774
(0.3) 		0.678
(0.959) 		0.92
(1.00) 		0.246
(0.571) 		0.002
(0.0375) 		0.771
(1.00) 		0.00727
(0.0787) 		0.00062
(0.018) 		0.673
(0.955)
PAK4 6 (1%) 483 0.103
(0.356) 		0.289
(0.617) 		0.329
(0.656) 		0.664
(0.95) 		0.00538
(0.0663) 		1e-05
(0.00111) 		0.0018
(0.0352) 		0.0607
(0.268)
TAF2 20 (4%) 469 0.00013
(0.00626) 		0.303
(0.633) 		0.00131
(0.0293) 		0.0784
(0.301) 		0.263
(0.588) 		0.288
(0.616) 		0.793
(1.00) 		0.109
(0.365) 		0.593
(0.897) 		0.779
(1.00) 		0.0252
(0.161) 		1
(1.00)
SLC25A17 8 (2%) 481 0.0731
(0.291) 		0.0403
(0.211) 		0.00413
(0.0586) 		0.557
(0.87) 		0.733
(0.999) 		1
(1.00) 		0.338
(0.665) 		0.0211
(0.147) 		0.902
(1.00) 		0.42
(0.748)
URGCP 18 (4%) 471 0.118
(0.383) 		0.184
(0.484) 		0.007
(0.0771) 		0.0153
(0.123) 		0.65
(0.936) 		0.444
(0.771) 		0.0683
(0.281) 		0.00058
(0.0171) 		0.254
(0.577) 		0.185
(0.485) 		0.0697
(0.285) 		0.547
(0.865)
DACT1 16 (3%) 473 0.0734
(0.291) 		0.556
(0.87) 		0.0004
(0.0132) 		0.0654
(0.276) 		0.281
(0.609) 		0.823
(1.00) 		0.0213
(0.147) 		0.00786
(0.0829) 		0.348
(0.676) 		0.0853
(0.316)
SULF2 25 (5%) 464 0.0339
(0.189) 		0.107
(0.361) 		0.135
(0.411) 		0.457
(0.784) 		0.204
(0.511) 		0.439
(0.766) 		0.108
(0.363) 		0.0431
(0.219) 		0.272
(0.597) 		0.0296
(0.176) 		0.143
(0.421) 		0.779
(1.00)
ARMC9 8 (2%) 481 0.00775
(0.0823) 		0.183
(0.484) 		0.205
(0.511) 		0.631
(0.926) 		0.241
(0.564) 		0.338
(0.666) 		0.673
(0.955) 		0.0195
(0.139) 		0.384
(0.712) 		0.0285
(0.172)
SNAPC1 7 (1%) 482 0.0154
(0.123) 		0.00294
(0.0485) 		0.0604
(0.268) 		0.777
(1.00) 		0.492
(0.818) 		0.885
(1.00) 		0.457
(0.784) 		0.0636
(0.274) 		0.885
(1.00) 		0.0132
(0.113)
NUP205 26 (5%) 463 0.15
(0.433) 		0.174
(0.474) 		0.00053
(0.0162) 		0.108
(0.364) 		0.293
(0.621) 		0.678
(0.959) 		0.0759
(0.296) 		0.0331
(0.186) 		0.814
(1.00) 		0.0238
(0.157) 		0.389
(0.716) 		0.268
(0.593)
BCHE 29 (6%) 460 0.026
(0.164) 		0.0737
(0.292) 		0.142
(0.42) 		0.913
(1.00) 		0.568
(0.875) 		0.961
(1.00) 		0.722
(0.99) 		0.0184
(0.135) 		0.733
(0.999) 		0.0428
(0.219) 		0.965
(1.00) 		0.569
(0.876)
NTRK2 25 (5%) 464 0.0163
(0.127) 		1
(1.00) 		0.196
(0.498) 		0.921
(1.00) 		0.73
(0.997) 		0.921
(1.00) 		0.0111
(0.102) 		0.00847
(0.0857) 		0.126
(0.394) 		0.14
(0.416) 		0.872
(1.00) 		0.0859
(0.317)
DPP8 14 (3%) 475 0.00677
(0.0755) 		0.0229
(0.153) 		0.00347
(0.0535) 		0.287
(0.616) 		0.732
(0.998) 		0.337
(0.664) 		0.0773
(0.3) 		0.0754
(0.295) 		0.208
(0.515) 		0.301
(0.63)
CAPRIN1 12 (2%) 477 0.373
(0.702) 		0.176
(0.475) 		0.0542
(0.253) 		0.00765
(0.0816) 		0.327
(0.656) 		0.118
(0.383) 		0.612
(0.912) 		0.0472
(0.232) 		0.807
(1.00) 		0.00231
(0.0413)
MTA2 12 (2%) 477 0.0184
(0.135) 		0.0188
(0.137) 		0.226
(0.543) 		0.201
(0.507) 		0.294
(0.622) 		0.0909
(0.329) 		0.612
(0.912) 		0.0584
(0.264) 		0.975
(1.00) 		0.00653
(0.0741) 		0.871
(1.00) 		0.56
(0.871)
RIMS2 40 (8%) 449 0.00169
(0.0341) 		0.093
(0.334) 		0.0236
(0.156) 		0.539
(0.86) 		0.131
(0.404) 		0.399
(0.725) 		0.133
(0.407) 		0.00111
(0.0263) 		0.0881
(0.322) 		0.515
(0.836) 		0.428
(0.755) 		0.896
(1.00)
ZFYVE16 19 (4%) 470 0.282
(0.609) 		0.376
(0.706) 		3e-05
(0.0022) 		0.15
(0.433) 		0.0558
(0.257) 		0.146
(0.426) 		0.0183
(0.135) 		0.00795
(0.0835) 		0.344
(0.671) 		0.209
(0.517)
APOBEC4 9 (2%) 480 0.00379
(0.056) 		0.638
(0.927) 		0.00467
(0.0619) 		0.206
(0.512) 		0.275
(0.602) 		1
(1.00) 		0.374
(0.704) 		0.0504
(0.241) 		0.693
(0.969) 		0.0272
(0.167)
KIFC2 6 (1%) 483 0.442
(0.769) 		0.879
(1.00) 		1
(1.00) 		0.853
(1.00) 		0.0616
(0.27) 		0.0101
(0.0959) 		0.00205
(0.038) 		0.00535
(0.066)
MCM4 14 (3%) 475 0.0151
(0.122) 		0.0616
(0.269) 		0.00195
(0.037) 		0.178
(0.477) 		0.35
(0.677) 		0.441
(0.768) 		0.204
(0.51) 		0.022
(0.151) 		0.496
(0.823) 		0.218
(0.53) 		1
(1.00) 		0.672
(0.955)
ARHGEF3 11 (2%) 478 0.0644
(0.275) 		0.254
(0.577) 		0.00557
(0.0675) 		0.497
(0.824) 		0.0374
(0.202) 		0.167
(0.461) 		0.329
(0.656) 		0.00382
(0.056) 		0.473
(0.801) 		0.143
(0.422) 		0.139
(0.415) 		1
(1.00)
TTBK2 18 (4%) 471 0.0271
(0.167) 		0.739
(1.00) 		0.00065
(0.0183) 		0.176
(0.475) 		0.477
(0.806) 		0.567
(0.875) 		0.173
(0.471) 		0.0226
(0.152) 		0.494
(0.821) 		0.405
(0.73) 		0.0716
(0.289) 		0.191
(0.493)
SLIT3 27 (6%) 462 0.497
(0.824) 		0.34
(0.667) 		1e-05
(0.00111) 		0.0766
(0.298) 		0.505
(0.831) 		1
(1.00) 		0.165
(0.459) 		0.00868
(0.0867) 		0.13
(0.402) 		0.0408
(0.213) 		0.667
(0.951) 		0.58
(0.885)
KIF14 13 (3%) 476 0.0058
(0.0689) 		0.244
(0.569) 		0.0293
(0.175) 		0.179
(0.479) 		1
(1.00) 		0.911
(1.00) 		0.106
(0.36) 		0.0519
(0.246) 		0.519
(0.84) 		0.0494
(0.238) 		0.872
(1.00) 		1
(1.00)
MRE11A 14 (3%) 475 0.00838
(0.0852) 		0.349
(0.677) 		0.00032
(0.0114) 		0.314
(0.642) 		0.247
(0.572) 		0.363
(0.692) 		0.0723
(0.29) 		0.00201
(0.0376) 		0.208
(0.515) 		0.0515
(0.245) 		0.327
(0.656) 		0.869
(1.00)
TSHZ1 13 (3%) 476 0.00358
(0.0545) 		0.253
(0.577) 		0.00078
(0.0207) 		0.396
(0.721) 		0.112
(0.371) 		0.784
(1.00) 		0.335
(0.663) 		0.00456
(0.0614) 		0.415
(0.743) 		0.502
(0.828)
RPS6KA5 11 (2%) 478 0.0221
(0.151) 		0.00635
(0.0732) 		0.03
(0.177) 		0.289
(0.617) 		0.39
(0.716) 		0.425
(0.753) 		0.0557
(0.257) 		0.0702
(0.286) 		1
(1.00) 		0.061
(0.268)
CDC73 22 (4%) 467 0.0263
(0.164) 		0.0488
(0.236) 		0.808
(1.00) 		0.376
(0.706) 		0.0276
(0.168) 		0.952
(1.00) 		0.165
(0.459) 		0.0544
(0.253) 		0.531
(0.851) 		0.652
(0.939) 		0.93
(1.00) 		0.382
(0.711)
MYH15 29 (6%) 460 0.0316
(0.182) 		0.153
(0.439) 		0.0017
(0.0342) 		0.19
(0.492) 		0.48
(0.808) 		0.775
(1.00) 		0.276
(0.603) 		0.0285
(0.172) 		0.587
(0.891) 		0.245
(0.57) 		0.747
(1.00) 		0.594
(0.898)
ATP2B4 21 (4%) 468 0.0089
(0.0879) 		0.88
(1.00) 		0.00298
(0.0489) 		0.598
(0.901) 		0.263
(0.587) 		0.752
(1.00) 		0.327
(0.656) 		0.048
(0.234) 		0.519
(0.84) 		0.535
(0.854) 		0.691
(0.968) 		0.923
(1.00)
PCDHGA8 18 (4%) 471 0.0739
(0.292) 		0.557
(0.87) 		9e-05
(0.00485) 		0.404
(0.729) 		0.46
(0.787) 		0.574
(0.881) 		0.251
(0.577) 		0.00127
(0.0288) 		0.0982
(0.344) 		0.0089
(0.0879) 		0.0923
(0.332) 		0.158
(0.447)
C20ORF177 13 (3%) 476 0.00808
(0.0838) 		0.347
(0.675) 		0.179
(0.479) 		0.126
(0.395) 		0.0425
(0.218) 		0.194
(0.497) 		0.113
(0.373) 		0.139
(0.415) 		0.375
(0.705) 		0.0331
(0.186) 		0.724
(0.992) 		0.788
(1.00)
RBL1 19 (4%) 470 0.309
(0.637) 		0.557
(0.87) 		0.0684
(0.282) 		0.422
(0.749) 		0.206
(0.512) 		0.0308
(0.18) 		0.0482
(0.234) 		0.0182
(0.135) 		0.972
(1.00) 		0.0603
(0.268)
MANBA 13 (3%) 476 0.00147
(0.0313) 		0.00049
(0.0153) 		0.00735
(0.0793) 		0.521
(0.842) 		0.0731
(0.291) 		0.263
(0.588) 		0.905
(1.00) 		0.0835
(0.313) 		0.651
(0.937) 		0.587
(0.891)
TUT1 10 (2%) 479 0.307
(0.636) 		0.175
(0.475) 		0.011
(0.101) 		0.288
(0.617) 		0.00052
(0.0161) 		0.132
(0.406) 		0.143
(0.422) 		0.0456
(0.227) 		0.621
(0.919) 		0.219
(0.532)
ARHGEF11 23 (5%) 466 0.0097
(0.0935) 		0.0759
(0.296) 		0.00838
(0.0852) 		0.533
(0.852) 		0.396
(0.721) 		0.953
(1.00) 		0.646
(0.933) 		0.0486
(0.235) 		0.494
(0.821) 		0.0684
(0.282) 		0.119
(0.385) 		1
(1.00)
C7ORF66 8 (2%) 481 0.593
(0.897) 		0.637
(0.927) 		0.0781
(0.301) 		0.339
(0.666) 		0.0282
(0.17) 		0.0495
(0.238) 		0.00991
(0.0949) 		0.289
(0.617) 		0.703
(0.975) 		0.565
(0.873)
DUSP9 9 (2%) 480 0.244
(0.568) 		0.738
(1.00) 		0.153
(0.439) 		0.0328
(0.185) 		0.187
(0.487) 		0.0395
(0.209) 		0.0279
(0.17) 		0.0932
(0.334) 		0.555
(0.87) 		0.379
(0.708)
ERCC3 20 (4%) 469 0.0432
(0.22) 		0.432
(0.759) 		0.0479
(0.234) 		0.178
(0.477) 		0.661
(0.947) 		0.723
(0.991) 		0.227
(0.546) 		0.0686
(0.282) 		0.848
(1.00) 		0.028
(0.17) 		1
(1.00) 		0.766
(1.00)
IL21R 14 (3%) 475 0.31
(0.637) 		0.175
(0.475) 		0.0121
(0.108) 		0.121
(0.387) 		0.858
(1.00) 		1
(1.00) 		0.0687
(0.282) 		0.00983
(0.0944) 		0.255
(0.578) 		0.00098
(0.0241)
NUP210L 24 (5%) 465 0.0608
(0.268) 		0.123
(0.389) 		0.00074
(0.0201) 		0.241
(0.565) 		0.159
(0.451) 		0.867
(1.00) 		0.688
(0.966) 		0.00209
(0.0385) 		0.0538
(0.251) 		0.42
(0.747) 		0.032
(0.183) 		0.886
(1.00)
RRAGD 7 (1%) 482 0.779
(1.00) 		0.878
(1.00) 		0.579
(0.885) 		0.031
(0.181) 		0.0181
(0.135) 		0.0102
(0.0968) 		0.384
(0.712) 		0.253
(0.577)
ANKRD40 9 (2%) 480 0.662
(0.948) 		0.557
(0.87) 		0.0749
(0.294) 		0.013
(0.112) 		0.895
(1.00) 		0.219
(0.532) 		0.32
(0.649) 		0.00416
(0.0588) 		0.523
(0.844) 		0.448
(0.775) 		0.00432
(0.06) 		1
(1.00)
CUX1 17 (3%) 472 0.258
(0.58) 		0.74
(1.00) 		0.00173
(0.0344) 		0.37
(0.7) 		0.69
(0.967) 		0.363
(0.692) 		0.301
(0.63) 		0.00067
(0.0187) 		0.351
(0.678) 		0.0036
(0.0546) 		0.088
(0.322) 		0.382
(0.711)
NLRP11 20 (4%) 469 0.0177
(0.133) 		0.0484
(0.235) 		0.00887
(0.0878) 		0.4
(0.725) 		0.0799
(0.304) 		0.857
(1.00) 		0.385
(0.713) 		0.245
(0.57) 		0.469
(0.796) 		0.603
(0.905) 		0.35
(0.678) 		0.923
(1.00)
RUSC2 13 (3%) 476 0.133
(0.407) 		0.252
(0.577) 		0.00817
(0.0842) 		0.396
(0.721) 		0.454
(0.78) 		0.801
(1.00) 		0.435
(0.763) 		0.00274
(0.0462) 		0.342
(0.669) 		0.0136
(0.115) 		0.136
(0.412) 		1
(1.00)
ZEB1 23 (5%) 466 0.136
(0.412) 		0.00238
(0.0419) 		0.0449
(0.225) 		0.429
(0.757) 		0.875
(1.00) 		0.442
(0.769) 		0.112
(0.371) 		0.0181
(0.134) 		0.583
(0.887) 		0.12
(0.386) 		0.228
(0.547) 		0.379
(0.709)
CSGALNACT1 9 (2%) 480 0.113
(0.372) 		0.0931
(0.334) 		0.389
(0.715) 		0.463
(0.789) 		0.015
(0.122) 		0.00644
(0.0737) 		0.0119
(0.107) 		0.145
(0.425) 		1
(1.00) 		1
(1.00)
ARHGEF7 21 (4%) 468 0.0152
(0.123) 		0.0189
(0.137) 		0.167
(0.461) 		0.105
(0.358) 		0.282
(0.61) 		0.627
(0.925) 		0.256
(0.578) 		0.00565
(0.068) 		0.503
(0.83) 		0.194
(0.497) 		0.269
(0.594) 		0.128
(0.398)
WDR65 6 (1%) 483 0.0226
(0.152) 		0.392
(0.717) 		0.329
(0.656) 		0.666
(0.951) 		0.35
(0.677) 		0.0318
(0.183) 		0.886
(1.00) 		0.54
(0.861) 		0.00437
(0.0605) 		1
(1.00)
KIAA0319 17 (3%) 472 0.033
(0.186) 		0.549
(0.866) 		0.00992
(0.095) 		0.257
(0.579) 		0.735
(1.00) 		0.359
(0.688) 		0.0193
(0.139) 		0.217
(0.528) 		0.531
(0.851) 		0.138
(0.414)
HECTD2 12 (2%) 477 0.00407
(0.0581) 		0.547
(0.865) 		0.00016
(0.00722) 		0.329
(0.656) 		0.606
(0.906) 		0.328
(0.656) 		0.154
(0.44) 		0.474
(0.802) 		0.551
(0.868) 		0.0434
(0.221)
CDH18 37 (8%) 452 0.0159
(0.125) 		0.0386
(0.206) 		0.0213
(0.148) 		0.171
(0.468) 		0.804
(1.00) 		0.602
(0.904) 		0.578
(0.884) 		0.174
(0.472) 		0.522
(0.843) 		0.0999
(0.348) 		0.278
(0.606) 		1
(1.00)
PODXL 10 (2%) 479 0.018
(0.134) 		0.0144
(0.118) 		0.00388
(0.0566) 		0.633
(0.927) 		0.434
(0.761) 		0.119
(0.384) 		0.783
(1.00) 		0.26
(0.584) 		0.702
(0.974) 		0.681
(0.961)
TCEANC 9 (2%) 480 0.0257
(0.163) 		0.252
(0.577) 		0.00184
(0.0357) 		0.555
(0.87) 		0.31
(0.637) 		0.642
(0.929) 		0.194
(0.497) 		0.0475
(0.233) 		0.437
(0.764) 		0.158
(0.449) 		0.137
(0.413) 		1
(1.00)
TATDN2 12 (2%) 477 0.0344
(0.191) 		0.125
(0.393) 		0.00518
(0.0648) 		0.633
(0.927) 		0.795
(1.00) 		0.847
(1.00) 		0.412
(0.739) 		0.0734
(0.291) 		0.265
(0.591) 		0.0495
(0.238) 		0.255
(0.578) 		0.696
(0.969)
GLTSCR1 12 (2%) 477 0.231
(0.551) 		0.253
(0.577) 		0.288
(0.617) 		0.118
(0.383) 		0.0528
(0.249) 		0.272
(0.597) 		0.00303
(0.0493) 		0.0297
(0.176) 		0.0961
(0.34) 		0.597
(0.9) 		0.00052
(0.0161) 		0.672
(0.955)
LEPROTL1 5 (1%) 484 0.0436
(0.221) 		0.0428
(0.219) 		0.851
(1.00) 		0.094
(0.336) 		0.0211
(0.147) 		0.191
(0.493) 		0.199
(0.503)
OR9Q1 6 (1%) 483 0.153
(0.439) 		0.383
(0.712) 		0.73
(0.997) 		1
(1.00) 		0.0491
(0.237) 		0.00093
(0.0233) 		0.0474
(0.232) 		0.159
(0.451) 		0.138
(0.414) 		1
(1.00)
ATL1 12 (2%) 477 0.0263
(0.164) 		0.255
(0.577) 		0.0002
(0.00826) 		0.0187
(0.137) 		0.652
(0.939) 		0.582
(0.887) 		0.134
(0.41) 		0.0758
(0.296) 		0.111
(0.369) 		0.522
(0.843)
METT10D 11 (2%) 478 0.0222
(0.151) 		1
(1.00) 		0.0295
(0.175) 		0.253
(0.577) 		0.113
(0.373) 		0.417
(0.744) 		0.635
(0.927) 		0.164
(0.458) 		0.126
(0.395) 		0.00079
(0.0209)
ALAS1 10 (2%) 479 0.0632
(0.273) 		0.252
(0.577) 		0.0134
(0.114) 		0.383
(0.712) 		0.876
(1.00) 		0.583
(0.887) 		0.727
(0.995) 		0.0114
(0.104) 		0.653
(0.939) 		0.0355
(0.195)
CTCFL 16 (3%) 473 0.00167
(0.0339) 		0.0157
(0.124) 		0.00012
(0.00589) 		0.497
(0.823) 		0.164
(0.459) 		0.636
(0.927) 		0.745
(1.00) 		0.0949
(0.338) 		0.93
(1.00) 		0.17
(0.466) 		0.592
(0.896) 		0.764
(1.00)
EPHA6 24 (5%) 465 0.0323
(0.184) 		0.232
(0.552) 		0.142
(0.419) 		0.633
(0.927) 		0.467
(0.793) 		0.269
(0.594) 		0.0372
(0.201) 		0.0241
(0.157) 		0.276
(0.602) 		0.182
(0.482) 		0.333
(0.66) 		0.601
(0.904)
KIAA1407 13 (3%) 476 0.026
(0.164) 		0.255
(0.577) 		0.288
(0.617) 		1
(1.00) 		0.522
(0.843) 		0.284
(0.612) 		0.886
(1.00) 		0.0338
(0.188) 		0.879
(1.00) 		0.00518
(0.0648) 		0.391
(0.716) 		1
(1.00)
LIMCH1 15 (3%) 474 0.0439
(0.222) 		0.00469
(0.0619) 		0.00761
(0.0814) 		0.495
(0.821) 		0.0617
(0.27) 		0.157
(0.445) 		0.561
(0.872) 		0.158
(0.449) 		0.601
(0.904) 		0.53
(0.85)
ACTRT1 13 (3%) 476 0.0176
(0.132) 		0.0128
(0.111) 		0.451
(0.777) 		0.161
(0.454) 		0.903
(1.00) 		1
(1.00) 		0.476
(0.804) 		0.0354
(0.195) 		0.467
(0.794) 		0.648
(0.935) 		0.0799
(0.304) 		0.604
(0.905)
SLC12A2 18 (4%) 471 0.104
(0.357) 		0.339
(0.666) 		0.0247
(0.159) 		0.192
(0.495) 		0.046
(0.228) 		0.706
(0.977) 		0.0301
(0.177) 		0.242
(0.566) 		0.216
(0.527) 		0.339
(0.666) 		0.357
(0.686) 		0.869
(1.00)
RELA 10 (2%) 479 0.165
(0.459) 		0.0458
(0.228) 		0.832
(1.00) 		0.824
(1.00) 		0.395
(0.72) 		0.0225
(0.152) 		0.205
(0.512) 		0.0274
(0.168) 		0.78
(1.00) 		0.139
(0.415)
KCNA3 20 (4%) 469 0.00849
(0.0858) 		0.0581
(0.263) 		0.00243
(0.0427) 		0.239
(0.563) 		0.77
(1.00) 		0.867
(1.00) 		0.121
(0.387) 		0.00203
(0.0377) 		0.47
(0.798) 		0.174
(0.472) 		0.0969
(0.341) 		0.676
(0.957)
MMP21 12 (2%) 477 0.0312
(0.181) 		0.554
(0.87) 		0.0022
(0.04) 		0.494
(0.821) 		0.6
(0.904) 		0.636
(0.927) 		0.611
(0.911) 		0.485
(0.812) 		0.502
(0.829) 		0.347
(0.674) 		0.00456
(0.0614) 		1
(1.00)
ACTN1 13 (3%) 476 0.0081
(0.0839) 		1
(1.00) 		0.0287
(0.172) 		0.104
(0.357) 		0.868
(1.00) 		0.542
(0.862) 		0.601
(0.904) 		0.0401
(0.211) 		0.532
(0.851) 		0.284
(0.612) 		0.145
(0.425) 		0.671
(0.954)
CCPG1 12 (2%) 477 0.113
(0.373) 		0.337
(0.665) 		0.0162
(0.127) 		0.14
(0.416) 		0.00867
(0.0867) 		0.565
(0.873) 		0.144
(0.423) 		0.0116
(0.105) 		0.681
(0.962) 		0.464
(0.791) 		0.256
(0.578) 		0.561
(0.872)
SLC43A3 13 (3%) 476 0.0547
(0.254) 		0.125
(0.393) 		0.00248
(0.0433) 		0.0044
(0.0608) 		0.2
(0.505) 		0.0253
(0.161) 		0.523
(0.844) 		0.109
(0.366) 		0.721
(0.989) 		0.286
(0.614) 		0.137
(0.413) 		1
(1.00)
IMMT 8 (2%) 481 0.00838
(0.0852) 		0.244
(0.569) 		0.333
(0.66) 		0.374
(0.704) 		0.719
(0.988) 		0.0412
(0.214) 		0.195
(0.498) 		0.111
(0.369) 		0.00683
(0.0759)
COLEC12 19 (4%) 470 0.0983
(0.344) 		0.308
(0.637) 		0.00267
(0.0455) 		0.617
(0.916) 		0.018
(0.134) 		0.933
(1.00) 		0.413
(0.74) 		0.016
(0.126) 		0.808
(1.00) 		0.302
(0.632)
BAP1 14 (3%) 475 0.0166
(0.128) 		0.0468
(0.231) 		0.421
(0.749) 		0.638
(0.927) 		0.066
(0.276) 		0.00324
(0.0512) 		0.368
(0.697) 		0.502
(0.829) 		0.303
(0.633) 		0.821
(1.00)
CDHR5 12 (2%) 477 0.179
(0.479) 		0.019
(0.138) 		0.0281
(0.17) 		0.382
(0.711) 		0.428
(0.755) 		0.135
(0.411) 		0.234
(0.554) 		0.0421
(0.216) 		0.926
(1.00) 		0.255
(0.578) 		0.254
(0.577) 		0.696
(0.969)
RXRA 8 (2%) 481 0.00441
(0.0608) 		0.178
(0.477) 		0.164
(0.457) 		1
(1.00) 		0.00273
(0.046) 		3e-05
(0.0022) 		0.492
(0.819) 		0.0562
(0.258)
LAMB4 30 (6%) 459 0.00156
(0.0325) 		0.0204
(0.144) 		0.0469
(0.231) 		0.132
(0.405) 		0.0823
(0.31) 		0.419
(0.747) 		0.585
(0.889) 		0.141
(0.417) 		0.884
(1.00) 		0.137
(0.413) 		0.792
(1.00) 		0.769
(1.00)
IFNA2 10 (2%) 479 0.0746
(0.293) 		0.0403
(0.211) 		0.0117
(0.106) 		0.682
(0.962) 		0.212
(0.521) 		0.498
(0.824) 		0.846
(1.00) 		0.0269
(0.166) 		0.475
(0.804) 		0.335
(0.663)
SOX6 16 (3%) 473 0.0225
(0.152) 		1
(1.00) 		0.00143
(0.0309) 		0.851
(1.00) 		0.424
(0.752) 		0.179
(0.479) 		0.297
(0.627) 		0.0149
(0.122) 		0.24
(0.563) 		0.275
(0.602) 		0.0956
(0.339) 		0.763
(1.00)
KDR 32 (7%) 457 0.00386
(0.0564) 		0.126
(0.394) 		0.00021
(0.00856) 		0.857
(1.00) 		0.0541
(0.252) 		0.123
(0.388) 		0.399
(0.724) 		0.00509
(0.0643) 		0.347
(0.674) 		0.34
(0.667) 		0.0582
(0.263) 		0.922
(1.00)
STK40 9 (2%) 480 0.016
(0.125) 		0.0395
(0.209) 		0.234
(0.554) 		1
(1.00) 		0.616
(0.915) 		1
(1.00) 		0.402
(0.727) 		0.0219
(0.15) 		1
(1.00) 		0.218
(0.53) 		0.626
(0.924) 		0.694
(0.969)
CENPJ 22 (4%) 467 0.071
(0.288) 		0.548
(0.866) 		1e-05
(0.00111) 		0.452
(0.779) 		0.0399
(0.21) 		0.674
(0.955) 		0.17
(0.467) 		0.0409
(0.213) 		0.105
(0.359) 		0.444
(0.771) 		0.189
(0.49) 		0.132
(0.406)
EPHA5 39 (8%) 450 0.127
(0.396) 		0.188
(0.49) 		0.0432
(0.22) 		0.0161
(0.126) 		0.209
(0.517) 		0.523
(0.844) 		0.579
(0.885) 		0.029
(0.174) 		0.701
(0.973) 		0.335
(0.663) 		1
(1.00) 		0.888
(1.00)
OSBPL1A 11 (2%) 478 0.017
(0.129) 		0.477
(0.806) 		0.047
(0.231) 		0.692
(0.969) 		0.091
(0.329) 		0.00672
(0.0751) 		0.896
(1.00) 		0.23
(0.55) 		0.195
(0.498) 		0.893
(1.00)
MLLT10 11 (2%) 478 0.359
(0.687) 		0.214
(0.523) 		0.0309
(0.18) 		0.529
(0.849) 		0.0366
(0.199) 		0.912
(1.00) 		0.763
(1.00) 		0.617
(0.916) 		0.0184
(0.135) 		0.437
(0.764) 		0.554
(0.87) 		0.195
(0.498)
HIST4H4 3 (1%) 486 0.66
(0.946) 		0.778
(1.00) 		0.0139
(0.116) 		0.00821
(0.0844) 		0.0672
(0.279) 		0.0348
(0.192)
ASTE1 10 (2%) 479 0.00377
(0.0558) 		0.0447
(0.225) 		0.0126
(0.111) 		0.627
(0.925) 		0.815
(1.00) 		0.725
(0.993) 		0.806
(1.00) 		0.0509
(0.242) 		0.622
(0.92) 		0.0549
(0.255)
FBXO38 18 (4%) 471 0.368
(0.698) 		0.0403
(0.211) 		0.0517
(0.245) 		0.111
(0.369) 		0.0541
(0.252) 		0.612
(0.912) 		0.084
(0.314) 		0.00035
(0.0122) 		0.0785
(0.302) 		0.269
(0.594) 		0.025
(0.16) 		0.462
(0.788)
NUP133 19 (4%) 470 0.00579
(0.0689) 		0.58
(0.885) 		0.00012
(0.00589) 		0.236
(0.558) 		0.65
(0.937) 		0.47
(0.798) 		0.178
(0.478) 		0.045
(0.225) 		0.838
(1.00) 		0.317
(0.645)
ENTHD1 11 (2%) 478 0.032
(0.183) 		0.0374
(0.202) 		0.659
(0.945) 		0.695
(0.969) 		0.116
(0.379) 		0.0136
(0.115) 		0.897
(1.00) 		0.276
(0.603)
CYP4F11 7 (1%) 482 0.00616
(0.0718) 		0.384
(0.712) 		0.0644
(0.275) 		0.758
(1.00) 		0.168
(0.462) 		0.0175
(0.132) 		0.0472
(0.232) 		0.23
(0.55) 		0.135
(0.411) 		0.561
(0.872)
CCDC89 4 (1%) 485 0.122
(0.388) 		0.557
(0.87) 		1
(1.00) 		0.0413
(0.214) 		0.0169
(0.129) 		0.0031
(0.0499) 		1
(1.00) 		0.802
(1.00)
FBLIM1 6 (1%) 483 0.0945
(0.337) 		0.195
(0.498) 		1
(1.00) 		1
(1.00) 		0.00254
(0.0439) 		0.00764
(0.0816) 		0.0389
(0.207) 		0.453
(0.78)
MYO1D 11 (2%) 478 0.00393
(0.057) 		0.0461
(0.229) 		0.0358
(0.196) 		0.522
(0.843) 		0.83
(1.00) 		0.545
(0.864) 		0.756
(1.00) 		0.0659
(0.276) 		0.702
(0.974) 		0.551
(0.867)
BBS2 14 (3%) 475 0.00554
(0.0674) 		0.881
(1.00) 		0.0456
(0.227) 		0.665
(0.95) 		0.0185
(0.136) 		0.203
(0.509) 		0.881
(1.00) 		0.633
(0.927) 		0.878
(1.00) 		0.949
(1.00)
SLC6A3 8 (2%) 481 0.206
(0.513) 		0.0202
(0.143) 		0.51
(0.833) 		0.578
(0.884) 		0.0097
(0.0935) 		0.00146
(0.0312) 		0.567
(0.875) 		0.212
(0.521)
RAD18 15 (3%) 474 0.626
(0.924) 		0.789
(1.00) 		0.0468
(0.231) 		0.829
(1.00) 		0.506
(0.832) 		0.932
(1.00) 		0.0403
(0.211) 		0.0039
(0.0568) 		0.468
(0.795) 		0.193
(0.497) 		0.269
(0.594) 		0.669
(0.954)
ROR1 23 (5%) 466 0.0268
(0.166) 		0.199
(0.503) 		0.0444
(0.224) 		0.7
(0.972) 		0.0404
(0.211) 		0.675
(0.956) 		0.655
(0.942) 		0.101
(0.351) 		0.524
(0.845) 		0.0521
(0.246)
SKIV2L2 13 (3%) 476 0.00806
(0.0838) 		0.185
(0.485) 		0.331
(0.659) 		0.608
(0.909) 		0.698
(0.97) 		0.803
(1.00) 		0.205
(0.512) 		0.00741
(0.0798) 		0.0334
(0.187) 		0.46
(0.787) 		0.692
(0.969) 		0.921
(1.00)
RBP3 14 (3%) 475 0.308
(0.637) 		0.833
(1.00) 		0.00338
(0.0525) 		0.306
(0.636) 		0.0835
(0.313) 		0.745
(1.00) 		0.301
(0.63) 		0.00293
(0.0484) 		0.206
(0.512) 		0.00417
(0.0588) 		0.873
(1.00) 		1
(1.00)
CCDC112 9 (2%) 480 0.0273
(0.167) 		0.254
(0.577) 		0.0118
(0.106) 		0.557
(0.87) 		0.03
(0.177) 		0.759
(1.00) 		0.375
(0.705) 		0.298
(0.627) 		0.844
(1.00) 		0.388
(0.715)
ZNF559 16 (3%) 473 0.00178
(0.035) 		0.00763
(0.0815) 		0.0234
(0.156) 		0.195
(0.498) 		0.35
(0.678) 		0.796
(1.00) 		0.7
(0.972) 		0.116
(0.378) 		0.149
(0.432) 		0.369
(0.698) 		1
(1.00) 		0.869
(1.00)
MTF2 9 (2%) 480 0.00792
(0.0833) 		1
(1.00) 		0.00172
(0.0343) 		0.289
(0.617) 		0.261
(0.585) 		0.0313
(0.182) 		0.671
(0.954) 		0.0799
(0.304) 		0.844
(1.00) 		0.721
(0.989)
MICAL1 9 (2%) 480 0.00163
(0.0335) 		0.179
(0.479) 		0.27
(0.595) 		1
(1.00) 		0.0589
(0.265) 		0.00065
(0.0183) 		0.602
(0.905) 		0.0156
(0.124) 		0.136
(0.412) 		0.447
(0.774)
ZNF418 14 (3%) 475 0.00365
(0.0549) 		0.0604
(0.268) 		0.0228
(0.153) 		0.254
(0.577) 		0.542
(0.862) 		0.147
(0.429) 		0.0438
(0.222) 		0.145
(0.424) 		0.435
(0.763) 		0.231
(0.551)
IL8 6 (1%) 483 0.0532
(0.25) 		1
(1.00) 		0.508
(0.832) 		0.666
(0.951) 		0.00199
(0.0373) 		0.00979
(0.0941) 		0.23
(0.55) 		0.0339
(0.189) 		0.872
(1.00) 		0.558
(0.87)
KLRK1 8 (2%) 481 0.0323
(0.184) 		0.00296
(0.0487) 		0.0247
(0.159) 		0.193
(0.497) 		0.374
(0.704) 		0.169
(0.465) 		0.298
(0.627) 		0.0563
(0.258) 		0.828
(1.00) 		0.69
(0.967)
MGAT5 13 (3%) 476 0.0157
(0.125) 		0.18
(0.48) 		0.567
(0.875) 		0.297
(0.627) 		0.869
(1.00) 		0.429
(0.756) 		0.304
(0.634) 		0.014
(0.116) 		0.49
(0.816) 		0.026
(0.164) 		0.699
(0.971) 		0.869
(1.00)
COL11A1 52 (11%) 437 0.331
(0.658) 		0.405
(0.73) 		0.00019
(0.00802) 		0.0403
(0.211) 		0.0776
(0.3) 		0.849
(1.00) 		0.14
(0.417) 		1e-05
(0.00111) 		0.378
(0.708) 		0.117
(0.38) 		0.109
(0.365) 		0.813
(1.00)
OR5L2 15 (3%) 474 0.0873
(0.32) 		0.175
(0.474) 		0.651
(0.938) 		0.8
(1.00) 		0.0354
(0.195) 		0.00045
(0.0144) 		0.0351
(0.194) 		0.0845
(0.314) 		0.137
(0.412) 		0.564
(0.873)
SBF1 16 (3%) 473 0.121
(0.387) 		0.184
(0.485) 		0.00035
(0.0122) 		0.0372
(0.201) 		0.874
(1.00) 		1
(1.00) 		0.243
(0.568) 		1e-05
(0.00111) 		0.355
(0.683) 		0.367
(0.697) 		0.0961
(0.34) 		0.488
(0.815)
TEX11 21 (4%) 468 0.203
(0.51) 		0.303
(0.633) 		0.256
(0.579) 		0.205
(0.512) 		0.187
(0.487) 		0.0543
(0.253) 		0.499
(0.825) 		0.0121
(0.108) 		0.0215
(0.149) 		0.0232
(0.155) 		1
(1.00) 		0.175
(0.475)
SKIV2L 13 (3%) 476 0.0669
(0.278) 		0.252
(0.577) 		0.0328
(0.185) 		0.122
(0.388) 		0.699
(0.972) 		0.396
(0.721) 		0.0389
(0.207) 		0.107
(0.361) 		0.0211
(0.147) 		0.0854
(0.316) 		0.644
(0.93) 		0.606
(0.906)
OGFRL1 10 (2%) 479 0.0127
(0.111) 		0.117
(0.38) 		0.00426
(0.0595) 		0.381
(0.711) 		0.713
(0.984) 		0.764
(1.00) 		0.283
(0.611) 		0.0166
(0.128) 		1
(1.00) 		0.316
(0.645)
VPS72 8 (2%) 481 0.024
(0.157) 		0.205
(0.511) 		1
(1.00) 		0.221
(0.535) 		0.0205
(0.145) 		0.00081
(0.0212) 		0.143
(0.42) 		0.231
(0.551)
ZC3H12C 15 (3%) 474 0.0143
(0.118) 		0.0733
(0.291) 		0.0177
(0.133) 		0.0276
(0.168) 		0.0751
(0.294) 		0.784
(1.00) 		0.084
(0.314) 		0.348
(0.676) 		0.117
(0.38) 		0.371
(0.7)
FER1L6 33 (7%) 456 0.00257
(0.0443) 		0.374
(0.704) 		0.112
(0.371) 		0.189
(0.49) 		0.0312
(0.181) 		0.275
(0.601) 		0.532
(0.852) 		0.0895
(0.325) 		0.728
(0.995) 		0.0393
(0.209) 		0.682
(0.962) 		0.834
(1.00)
LY75 11 (2%) 478 0.12
(0.386) 		0.184
(0.484) 		0.033
(0.185) 		0.444
(0.771) 		0.121
(0.387) 		1
(1.00) 		0.606
(0.906) 		0.0397
(0.209) 		0.409
(0.736) 		0.0244
(0.158)
KRT1 15 (3%) 474 0.0159
(0.125) 		0.554
(0.87) 		0.0746
(0.293) 		0.506
(0.832) 		0.607
(0.907) 		0.635
(0.927) 		0.06
(0.268) 		0.0217
(0.149) 		0.125
(0.392) 		0.0975
(0.342) 		0.00477
(0.0623) 		1
(1.00)
BTBD7 12 (2%) 477 0.0269
(0.166) 		0.213
(0.522) 		0.0153
(0.123) 		0.82
(1.00) 		0.389
(0.716) 		0.145
(0.424) 		0.292
(0.62) 		0.02
(0.142) 		0.881
(1.00) 		0.517
(0.839)
TEX14 25 (5%) 464 0.0552
(0.256) 		0.0151
(0.122) 		0.00538
(0.0663) 		0.858
(1.00) 		0.235
(0.556) 		0.369
(0.698) 		0.796
(1.00) 		0.003
(0.049) 		0.347
(0.675) 		0.187
(0.487) 		0.27
(0.595) 		0.94
(1.00)
F9 20 (4%) 469 0.00597
(0.0702) 		0.0225
(0.152) 		0.037
(0.2) 		0.426
(0.753) 		0.897
(1.00) 		0.249
(0.576) 		0.977
(1.00) 		0.5
(0.826) 		0.117
(0.38) 		0.581
(0.886) 		0.869
(1.00) 		0.318
(0.647)
KLHDC9 5 (1%) 484 0.0439
(0.222) 		0.327
(0.656) 		0.0621
(0.271) 		0.212
(0.521) 		0.0204
(0.144) 		0.00076
(0.0204) 		0.352
(0.679) 		0.126
(0.394)
ACVR1B 28 (6%) 461 0.362
(0.691) 		0.115
(0.376) 		0.00038
(0.0128) 		0.333
(0.66) 		0.294
(0.623) 		0.447
(0.773) 		0.485
(0.813) 		0.0781
(0.301) 		0.282
(0.61) 		0.165
(0.459) 		0.00365
(0.0549) 		0.266
(0.591)
SMAD2 22 (4%) 467 0.0923
(0.332) 		0.359
(0.688) 		0.0127
(0.111) 		0.481
(0.808) 		0.433
(0.761) 		0.749
(1.00) 		0.00804
(0.0837) 		0.195
(0.498) 		0.0537
(0.251) 		0.674
(0.956) 		0.415
(0.743) 		1
(1.00)
ATXN3L 20 (4%) 469 0.121
(0.387) 		0.639
(0.927) 		0.452
(0.778) 		0.947
(1.00) 		0.185
(0.485) 		0.136
(0.411) 		0.323
(0.653) 		0.172
(0.47) 		0.0022
(0.04) 		0.0468
(0.231) 		0.343
(0.67) 		0.756
(1.00)
DIP2B 30 (6%) 459 0.0341
(0.19) 		0.0754
(0.295) 		0.319
(0.647) 		0.25
(0.576) 		0.283
(0.611) 		0.55
(0.867) 		0.063
(0.272) 		0.0374
(0.202) 		0.196
(0.499) 		0.17
(0.465) 		1
(1.00) 		0.175
(0.474)
IFT57 13 (3%) 476 0.327
(0.656) 		0.741
(1.00) 		0.246
(0.571) 		0.637
(0.927) 		0.0264
(0.164) 		0.019
(0.138) 		0.477
(0.806) 		0.761
(1.00)
DCLK2 16 (3%) 473 0.0065
(0.074) 		0.336
(0.664) 		0.425
(0.753) 		0.919
(1.00) 		0.014
(0.117) 		0.803
(1.00) 		0.617
(0.916) 		0.658
(0.945) 		0.697
(0.97) 		0.571
(0.878) 		0.781
(1.00) 		0.695
(0.969)
FYN 17 (3%) 472 0.0224
(0.152) 		0.739
(1.00) 		0.0129
(0.112) 		1
(1.00) 		0.234
(0.555) 		0.937
(1.00) 		0.0916
(0.33) 		0.146
(0.427) 		0.305
(0.635) 		0.288
(0.617) 		0.78
(1.00) 		0.313
(0.64)
MAP4K3 21 (4%) 468 0.133
(0.407) 		0.635
(0.927) 		0.0318
(0.183) 		0.0992
(0.346) 		0.214
(0.524) 		0.734
(0.999) 		0.0628
(0.272) 		0.00033
(0.0117) 		0.0551
(0.256) 		0.0865
(0.318) 		0.189
(0.49) 		0.342
(0.669)
BIRC3 15 (3%) 474 0.0159
(0.125) 		0.557
(0.87) 		0.205
(0.511) 		0.616
(0.915) 		0.871
(1.00) 		0.745
(1.00) 		0.502
(0.829) 		0.0319
(0.183) 		0.466
(0.793) 		0.362
(0.691) 		0.593
(0.897) 		0.671
(0.955)
PRPH2 13 (3%) 476 0.0178
(0.133) 		0.0135
(0.114) 		0.108
(0.363) 		0.694
(0.969) 		0.206
(0.512) 		1
(1.00) 		0.92
(1.00) 		0.138
(0.414) 		0.428
(0.755) 		0.425
(0.752) 		0.168
(0.463) 		0.451
(0.777)
CLEC4F 20 (4%) 469 0.157
(0.445) 		0.182
(0.483) 		0.0003
(0.0109) 		0.11
(0.367) 		0.25
(0.577) 		0.581
(0.886) 		0.0769
(0.299) 		0.051
(0.243) 		0.679
(0.96) 		0.289
(0.618) 		0.0246
(0.159) 		0.871
(1.00)
CYLD 27 (6%) 462 0.223
(0.537) 		0.74
(1.00) 		0.913
(1.00) 		0.922
(1.00) 		0.0176
(0.132) 		0.821
(1.00) 		0.0778
(0.3) 		0.0123
(0.109) 		0.143
(0.422) 		0.051
(0.243) 		0.901
(1.00) 		0.299
(0.629)
AMOT 16 (3%) 473 0.273
(0.599) 		0.185
(0.485) 		0.0043
(0.06) 		0.239
(0.562) 		0.938
(1.00) 		1
(1.00) 		0.208
(0.515) 		0.026
(0.164) 		1
(1.00) 		0.418
(0.745) 		0.48
(0.808) 		0.251
(0.577)
TMEM126A 7 (1%) 482 0.918
(1.00) 		0.0956
(0.339) 		0.0842
(0.314) 		0.327
(0.656) 		0.063
(0.272) 		0.0211
(0.146) 		0.0386
(0.206) 		0.48
(0.808)
OR5V1 18 (4%) 471 0.122
(0.387) 		1
(1.00) 		0.919
(1.00) 		0.713
(0.983) 		0.0545
(0.254) 		0.316
(0.644) 		0.178
(0.477) 		0.0121
(0.108) 		0.0402
(0.211) 		0.111
(0.369) 		0.71
(0.981) 		0.215
(0.525)
SLAMF7 11 (2%) 478 0.443
(0.77) 		0.48
(0.808) 		0.772
(1.00) 		0.763
(1.00) 		0.0418
(0.215) 		0.0259
(0.163) 		0.294
(0.623) 		0.566
(0.874)
ATG5 9 (2%) 480 0.629
(0.925) 		1
(1.00) 		0.296
(0.625) 		0.383
(0.712) 		0.197
(0.5) 		0.142
(0.419) 		0.968
(1.00) 		0.013
(0.113) 		0.342
(0.669) 		0.00831
(0.0848)
DUSP1 7 (1%) 482 0.513
(0.835) 		0.774
(1.00) 		0.0146
(0.12) 		0.759
(1.00) 		0.221
(0.535) 		0.315
(0.643) 		0.0112
(0.103) 		0.0607
(0.268) 		0.21
(0.518) 		0.565
(0.873)
ATP11B 19 (4%) 470 0.0318
(0.183) 		0.555
(0.87) 		0.0653
(0.276) 		0.504
(0.831) 		0.0426
(0.218) 		0.508
(0.832) 		0.202
(0.507) 		0.067
(0.278) 		0.264
(0.589) 		0.321
(0.65) 		0.724
(0.992) 		0.364
(0.693)
NEFH 14 (3%) 475 0.0654
(0.276) 		1
(1.00) 		0.0498
(0.239) 		0.308
(0.637) 		0.526
(0.847) 		0.926
(1.00) 		0.219
(0.532) 		0.00705
(0.0773) 		0.0558
(0.257) 		0.525
(0.847)
KIAA1804 26 (5%) 463 0.268
(0.594) 		0.941
(1.00) 		0.0207
(0.145) 		0.0842
(0.314) 		0.305
(0.634) 		0.351
(0.678) 		0.253
(0.577) 		0.0253
(0.161) 		0.0816
(0.309) 		0.474
(0.802) 		0.137
(0.413) 		1
(1.00)
TM9SF2 11 (2%) 478 0.00474
(0.0622) 		0.113
(0.373) 		0.113
(0.373) 		0.158
(0.449) 		0.509
(0.832) 		0.0178
(0.133) 		0.162
(0.455) 		0.333
(0.661) 		0.0944
(0.337) 		0.869
(1.00)
TUBA4A 12 (2%) 477 0.63
(0.925) 		1
(1.00) 		0.0479
(0.234) 		0.583
(0.887) 		0.177
(0.477) 		0.565
(0.873) 		0.185
(0.485) 		0.0398
(0.21) 		0.167
(0.461) 		0.426
(0.753) 		0.361
(0.69) 		0.767
(1.00)
LRRC39 9 (2%) 480 0.074
(0.292) 		0.443
(0.77) 		0.082
(0.31) 		0.0687
(0.282) 		0.0721
(0.289) 		0.0107
(0.0995) 		0.502
(0.829) 		0.0338
(0.188)
ST8SIA6 14 (3%) 475 0.0655
(0.276) 		1
(1.00) 		0.0132
(0.113) 		0.508
(0.832) 		0.542
(0.862) 		0.334
(0.661) 		0.255
(0.578) 		0.0102
(0.0966) 		0.896
(1.00) 		0.759
(1.00) 		0.485
(0.812) 		0.254
(0.577)
OR7C2 12 (2%) 477 0.85
(1.00) 		0.919
(1.00) 		0.0252
(0.161) 		0.309
(0.637) 		0.182
(0.483) 		0.0465
(0.23) 		0.151
(0.435) 		0.0631
(0.273) 		0.783
(1.00) 		0.839
(1.00)
INTS4 22 (4%) 467 0.0744
(0.293) 		0.557
(0.87) 		0.167
(0.461) 		0.953
(1.00) 		0.314
(0.642) 		0.0588
(0.265) 		0.0462
(0.229) 		0.00198
(0.0373) 		0.129
(0.4) 		0.642
(0.929) 		0.0903
(0.327) 		0.567
(0.875)
DDX23 21 (4%) 468 0.0273
(0.167) 		0.254
(0.577) 		0.244
(0.569) 		0.901
(1.00) 		0.00415
(0.0588) 		0.311
(0.638) 		0.449
(0.775) 		0.0783
(0.301) 		0.0703
(0.286) 		0.663
(0.949) 		0.23
(0.55) 		0.305
(0.635)
GMCL1 14 (3%) 475 0.765
(1.00) 		0.937
(1.00) 		0.108
(0.363) 		0.391
(0.716) 		0.00714
(0.0779) 		0.00114
(0.0268) 		0.316
(0.644) 		0.812
(1.00) 		0.588
(0.892) 		0.772
(1.00)
RBMX2 12 (2%) 477 0.288
(0.617) 		0.506
(0.832) 		0.489
(0.816) 		1
(1.00) 		0.021
(0.146) 		0.00109
(0.0259) 		0.771
(1.00) 		0.0635
(0.274)
ZNF280B 13 (3%) 476 0.032
(0.183) 		0.232
(0.552) 		0.0245
(0.158) 		0.915
(1.00) 		0.116
(0.377) 		0.185
(0.485) 		0.392
(0.717) 		0.521
(0.842) 		0.208
(0.516) 		0.405
(0.73) 		0.872
(1.00) 		0.564
(0.873)
CCDC160 11 (2%) 478 0.256
(0.578) 		0.847
(1.00) 		0.00504
(0.064) 		0.0125
(0.11) 		0.318
(0.647) 		0.639
(0.927) 		0.0977
(0.343) 		0.165
(0.459) 		0.127
(0.396) 		0.28
(0.608)
TCF7L2 35 (7%) 454 0.962
(1.00) 		0.646
(0.933) 		0.00727
(0.0787) 		0.378
(0.707) 		0.131
(0.403) 		0.605
(0.906) 		0.552
(0.869) 		0.188
(0.49) 		0.948
(1.00) 		0.629
(0.925) 		0.244
(0.569) 		0.0368
(0.2)
RAG1AP1 6 (1%) 483 0.791
(1.00) 		0.865
(1.00) 		0.0105
(0.0985) 		0.101
(0.35) 		0.583
(0.887) 		0.045
(0.225) 		0.744
(1.00) 		0.106
(0.36)
SLC28A2 15 (3%) 474 0.0224
(0.152) 		0.524
(0.845) 		0.609
(0.91) 		0.636
(0.927) 		0.0178
(0.133) 		0.0665
(0.277) 		0.168
(0.463) 		0.207
(0.514) 		0.872
(1.00) 		0.378
(0.707)
ZNF583 18 (4%) 471 0.0297
(0.176) 		0.878
(1.00) 		0.012
(0.108) 		0.753
(1.00) 		0.321
(0.65) 		0.274
(0.6) 		0.728
(0.995) 		0.0636
(0.274) 		0.112
(0.372) 		0.149
(0.432) 		0.137
(0.413) 		0.563
(0.873)
MAGEA1 14 (3%) 475 0.661
(0.947) 		0.182
(0.483) 		0.245
(0.57) 		0.104
(0.357) 		0.0175
(0.132) 		0.00417
(0.0588) 		0.0539
(0.252) 		0.407
(0.732) 		0.138
(0.414) 		0.492
(0.819)
SNAI2 11 (2%) 478 0.345
(0.673) 		0.435
(0.762) 		0.0132
(0.113) 		0.19
(0.491) 		0.021
(0.146) 		0.228
(0.548) 		0.31
(0.637) 		0.559
(0.87)
BAG4 8 (2%) 481 0.0174
(0.132) 		0.383
(0.712) 		1
(1.00) 		0.716
(0.986) 		0.257
(0.579) 		0.0412
(0.214) 		0.491
(0.817) 		0.141
(0.417)
RNF182 16 (3%) 473 0.0647
(0.275) 		0.621
(0.919) 		0.253
(0.577) 		0.942
(1.00) 		0.894
(1.00) 		0.448
(0.774) 		0.0102
(0.0966) 		0.0106
(0.099) 		0.365
(0.694) 		0.81
(1.00) 		0.761
(1.00) 		0.321
(0.65)
SLC33A1 10 (2%) 479 0.00426
(0.0595) 		0.603
(0.905) 		0.309
(0.637) 		0.0588
(0.265) 		0.107
(0.362) 		0.012
(0.108) 		0.161
(0.454) 		0.713
(0.984) 		0.252
(0.577) 		0.562
(0.873)
F2RL1 8 (2%) 481 0.0574
(0.261) 		0.714
(0.985) 		0.0247
(0.159) 		0.682
(0.962) 		0.225
(0.542) 		0.00312
(0.05) 		0.913
(1.00) 		0.676
(0.958)
WEE1 12 (2%) 477 0.00349
(0.0537) 		0.371
(0.701) 		0.301
(0.63) 		0.147
(0.428) 		0.0912
(0.329) 		0.0171
(0.13) 		0.104
(0.356) 		0.788
(1.00)
NSUN6 10 (2%) 479 0.0129
(0.112) 		0.604
(0.905) 		0.507
(0.832) 		0.916
(1.00) 		0.411
(0.737) 		0.00385
(0.0563) 		1
(1.00) 		0.139
(0.415) 		0.873
(1.00) 		0.563
(0.873)
GATA3 16 (3%) 473 0.628
(0.925) 		0.252
(0.577) 		0.02
(0.142) 		0.213
(0.522) 		0.208
(0.516) 		0.498
(0.824) 		0.186
(0.486) 		0.00401
(0.0578) 		0.479
(0.807) 		0.0522
(0.247) 		0.256
(0.578) 		0.562
(0.872)
PRDM1 22 (4%) 467 0.0528
(0.249) 		0.739
(1.00) 		0.0834
(0.313) 		0.0769
(0.299) 		0.792
(1.00) 		0.3
(0.63) 		0.0994
(0.347) 		0.024
(0.157) 		0.00183
(0.0356) 		0.0712
(0.288)
ZNF708 13 (3%) 476 0.0154
(0.123) 		1
(1.00) 		0.0329
(0.185) 		0.638
(0.927) 		0.506
(0.832) 		0.483
(0.81) 		0.836
(1.00) 		0.0618
(0.27) 		0.14
(0.416) 		0.603
(0.905)
IL13RA2 16 (3%) 473 0.788
(1.00) 		1
(1.00) 		0.608
(0.909) 		0.776
(1.00) 		0.0851
(0.316) 		0.363
(0.692) 		0.413
(0.74) 		0.0311
(0.181) 		0.0347
(0.192) 		0.207
(0.514) 		0.781
(1.00) 		1
(1.00)
TGFBR2 23 (5%) 466 0.111
(0.369) 		0.337
(0.665) 		0.0392
(0.208) 		0.946
(1.00) 		0.712
(0.983) 		0.53
(0.85) 		0.259
(0.583) 		0.0321
(0.183) 		0.548
(0.866) 		0.131
(0.404) 		0.678
(0.959) 		0.682
(0.962)
HIST1H1E 6 (1%) 483 0.0932
(0.334) 		0.0669
(0.278) 		0.386
(0.714) 		0.578
(0.884) 		0.00561
(0.0677) 		0.0217
(0.149) 		0.184
(0.484) 		0.234
(0.555)
NLRP13 31 (6%) 458 0.0163
(0.127) 		0.691
(0.968) 		0.0658
(0.276) 		0.332
(0.659) 		0.221
(0.535) 		0.811
(1.00) 		0.599
(0.902) 		0.0384
(0.205) 		0.709
(0.98) 		0.198
(0.502) 		0.832
(1.00) 		1
(1.00)
PIK3C2A 22 (4%) 467 0.166
(0.46) 		0.252
(0.577) 		0.007
(0.0771) 		0.862
(1.00) 		0.506
(0.832) 		0.478
(0.806) 		0.315
(0.644) 		0.00519
(0.0649) 		0.0506
(0.242) 		0.607
(0.908) 		0.0908
(0.328) 		0.0831
(0.312)
DPCR1 15 (3%) 474 0.00975
(0.0939) 		0.28
(0.608) 		0.736
(1.00) 		0.364
(0.693) 		0.346
(0.674) 		0.0273
(0.167) 		0.0952
(0.338) 		0.271
(0.596) 		0.203
(0.51) 		0.169
(0.464)
GPR112 38 (8%) 451 0.288
(0.617) 		0.045
(0.225) 		0.031
(0.181) 		0.511
(0.833) 		0.612
(0.912) 		0.574
(0.881) 		0.678
(0.959) 		0.271
(0.596) 		0.408
(0.734) 		0.35
(0.678) 		0.25
(0.576) 		0.789
(1.00)
PPP2R1A 14 (3%) 475 0.155
(0.442) 		0.121
(0.387) 		0.199
(0.503) 		0.56
(0.871) 		0.216
(0.527) 		0.00012
(0.00589) 		0.765
(1.00) 		0.173
(0.472) 		0.00481
(0.0627) 		1
(1.00)
NUP54 10 (2%) 479 0.0519
(0.246) 		0.0779
(0.301) 		0.715
(0.986) 		0.301
(0.63) 		0.496
(0.822) 		0.0483
(0.235) 		0.907
(1.00) 		0.0262
(0.164) 		0.695
(0.969) 		0.871
(1.00)
FUBP3 9 (2%) 480 0.00164
(0.0336) 		0.203
(0.509) 		0.165
(0.459) 		0.363
(0.692) 		0.0568
(0.259) 		0.00073
(0.0199) 		0.307
(0.637) 		0.0841
(0.314)
MARK1 29 (6%) 460 0.0266
(0.165) 		0.131
(0.403) 		0.0192
(0.139) 		0.508
(0.832) 		0.322
(0.651) 		0.318
(0.647) 		0.433
(0.761) 		0.35
(0.678) 		0.525
(0.846) 		0.305
(0.635) 		0.891
(1.00) 		0.922
(1.00)
ENPEP 23 (5%) 466 0.00242
(0.0425) 		0.531
(0.851) 		0.00226
(0.0407) 		0.172
(0.469) 		1
(1.00) 		0.695
(0.969) 		0.293
(0.622) 		0.0917
(0.33) 		0.528
(0.848) 		0.488
(0.815) 		0.367
(0.697) 		0.282
(0.61)
C6ORF170 23 (5%) 466 0.00523
(0.0651) 		0.547
(0.865) 		0.0195
(0.14) 		0.183
(0.484) 		0.572
(0.878) 		0.861
(1.00) 		0.299
(0.628) 		0.232
(0.552) 		0.616
(0.915) 		0.364
(0.693) 		0.594
(0.898) 		1
(1.00)
SKIL 9 (2%) 480 0.883
(1.00) 		0.496
(0.822) 		0.278
(0.605) 		0.16
(0.452) 		0.0162
(0.126) 		0.00492
(0.0634) 		0.128
(0.397) 		0.256
(0.578) 		0.306
(0.636) 		0.0619
(0.27)
WDR78 16 (3%) 473 0.0268
(0.166) 		0.0452
(0.226) 		0.057
(0.26) 		0.27
(0.595) 		0.168
(0.462) 		0.939
(1.00) 		0.453
(0.779) 		0.0674
(0.279) 		0.259
(0.583) 		0.481
(0.809)
GRIA4 37 (8%) 452 0.425
(0.752) 		0.918
(1.00) 		0.134
(0.409) 		0.049
(0.237) 		0.23
(0.55) 		0.54
(0.861) 		0.473
(0.801) 		0.0243
(0.158) 		0.838
(1.00) 		0.986
(1.00) 		0.362
(0.691) 		0.23
(0.55)
ATP6V1A 11 (2%) 478 0.527
(0.847) 		0.0131
(0.113) 		0.308
(0.637) 		0.807
(1.00) 		0.346
(0.674) 		0.0313
(0.181) 		0.0976
(0.343) 		0.269
(0.594) 		0.39
(0.716) 		0.671
(0.954)
FLG2 33 (7%) 456 0.32
(0.649) 		0.135
(0.411) 		0.00096
(0.0237) 		0.083
(0.312) 		0.729
(0.996) 		0.669
(0.954) 		0.303
(0.633) 		0.128
(0.397) 		0.441
(0.768) 		0.139
(0.415) 		0.0344
(0.191) 		0.595
(0.898)
BAI3 54 (11%) 435 0.0599
(0.268) 		0.0305
(0.179) 		0.172
(0.469) 		0.123
(0.389) 		0.164
(0.457) 		0.164
(0.459) 		0.585
(0.889) 		0.0612
(0.269) 		0.194
(0.497) 		0.0202
(0.143) 		0.0685
(0.282) 		0.441
(0.768)
CTBP2 7 (1%) 482 0.104
(0.357) 		0.635
(0.927) 		1
(1.00) 		1
(1.00) 		0.0218
(0.15) 		0.0062
(0.0722) 		0.483
(0.81) 		0.635
(0.927)
NTRK3 31 (6%) 458 0.0176
(0.133) 		0.377
(0.706) 		0.285
(0.613) 		0.395
(0.72) 		0.573
(0.88) 		0.814
(1.00) 		0.891
(1.00) 		0.0135
(0.114) 		0.657
(0.943) 		0.555
(0.87) 		0.921
(1.00) 		0.772
(1.00)
MYEOV 7 (1%) 482 0.328
(0.656) 		0.384
(0.712) 		0.434
(0.762) 		0.309
(0.637) 		0.229
(0.549) 		0.0116
(0.105) 		0.0392
(0.208) 		0.307
(0.636)
RAF1 15 (3%) 474 0.404
(0.73) 		0.556
(0.87) 		0.0238
(0.157) 		0.309
(0.637) 		0.478
(0.806) 		0.569
(0.876) 		0.56
(0.871) 		0.0487
(0.236) 		0.731
(0.998) 		0.944
(1.00)
CYLC1 34 (7%) 455 0.112
(0.371) 		0.58
(0.885) 		0.0588
(0.265) 		0.21
(0.518) 		0.187
(0.488) 		0.486
(0.813) 		0.00279
(0.0467) 		4e-05
(0.00269) 		0.286
(0.615) 		0.121
(0.387) 		0.309
(0.637) 		0.677
(0.958)
CLIP4 14 (3%) 475 0.0267
(0.165) 		0.019
(0.138) 		0.163
(0.456) 		0.126
(0.394) 		0.716
(0.986) 		0.36
(0.689) 		0.0723
(0.29) 		0.13
(0.401) 		0.793
(1.00) 		0.279
(0.606) 		0.255
(0.578) 		1
(1.00)
CLCNKA 10 (2%) 479 0.0595
(0.267) 		0.242
(0.566) 		0.903
(1.00) 		0.64
(0.928) 		0.0185
(0.136) 		0.00018
(0.00778) 		0.172
(0.469) 		0.114
(0.374) 		0.0606
(0.268) 		0.697
(0.97)
ALG2 8 (2%) 481 0.00786
(0.0829) 		0.252
(0.577) 		0.0759
(0.296) 		1
(1.00) 		0.508
(0.832) 		1
(1.00) 		1
(1.00) 		0.417
(0.745) 		0.827
(1.00) 		0.00456
(0.0614)
C6ORF89 7 (1%) 482 0.0319
(0.183) 		0.557
(0.87) 		0.0178
(0.133) 		0.0594
(0.267) 		0.731
(0.998) 		0.851
(1.00) 		0.531
(0.851) 		0.757
(1.00) 		0.943
(1.00) 		0.589
(0.894) 		0.703
(0.975) 		0.561
(0.872)
STK38L 10 (2%) 479 0.0078
(0.0825) 		1
(1.00) 		0.293
(0.622) 		0.716
(0.986) 		0.317
(0.645) 		1
(1.00) 		0.826
(1.00) 		0.0854
(0.316) 		0.0191
(0.138) 		0.455
(0.781) 		1
(1.00) 		0.841
(1.00)
SLC2A3 12 (2%) 477 0.289
(0.617) 		0.312
(0.639) 		0.676
(0.957) 		1
(1.00) 		0.0208
(0.145) 		0.00707
(0.0774) 		0.578
(0.884) 		0.357
(0.686) 		0.228
(0.548) 		0.852
(1.00)
CASC1 14 (3%) 475 0.00855
(0.0862) 		0.578
(0.884) 		0.0351
(0.194) 		1
(1.00) 		0.919
(1.00) 		0.841
(1.00) 		0.636
(0.927) 		0.128
(0.398) 		0.888
(1.00) 		0.259
(0.583)
FGFR1 19 (4%) 470 0.12
(0.386) 		1
(1.00) 		0.0962
(0.34) 		0.42
(0.748) 		0.227
(0.544) 		0.0258
(0.163) 		0.0267
(0.165) 		0.101
(0.351) 		0.464
(0.791) 		0.177
(0.477) 		0.872
(1.00) 		0.309
(0.637)
OSMR 22 (4%) 467 0.272
(0.598) 		0.577
(0.883) 		0.0115
(0.105) 		0.0667
(0.278) 		0.612
(0.912) 		1
(1.00) 		0.437
(0.764) 		0.00659
(0.0743) 		0.165
(0.459) 		0.388
(0.715) 		0.343
(0.67) 		0.266
(0.591)
RASA2 17 (3%) 472 0.153
(0.439) 		0.787
(1.00) 		0.0585
(0.264) 		0.294
(0.623) 		0.648
(0.935) 		0.0463
(0.229) 		0.121
(0.387) 		0.0247
(0.159) 		0.0791
(0.303) 		0.0638
(0.274) 		0.0943
(0.336) 		0.87
(1.00)
TAF12 4 (1%) 485 0.259
(0.583) 		0.832
(1.00) 		0.0551
(0.255) 		0.3
(0.629) 		0.0389
(0.207) 		0.059
(0.266) 		0.0284
(0.171) 		0.165
(0.459)
ZNF286A 9 (2%) 480 0.0638
(0.274) 		0.789
(1.00) 		0.0117
(0.106) 		0.0279
(0.17) 		0.66
(0.946) 		0.725
(0.993) 		0.12
(0.385) 		0.499
(0.825) 		0.123
(0.39) 		0.723
(0.991) 		0.358
(0.687) 		0.767
(1.00)
ZNF570 11 (2%) 478 0.0317
(0.182) 		0.554
(0.87) 		0.278
(0.606) 		0.821
(1.00) 		0.321
(0.65) 		1
(1.00) 		0.327
(0.656) 		0.207
(0.514) 		0.871
(1.00) 		0.0481
(0.234) 		0.0596
(0.267) 		0.45
(0.776)
ETV1 15 (3%) 474 0.0223
(0.152) 		0.737
(1.00) 		0.0121
(0.108) 		0.369
(0.698) 		0.107
(0.361) 		0.634
(0.927) 		0.159
(0.451) 		0.243
(0.568) 		0.125
(0.393) 		0.0998
(0.348) 		0.118
(0.383) 		1
(1.00)
ATG2B 18 (4%) 471 0.01
(0.0955) 		0.531
(0.851) 		0.00211
(0.0387) 		0.257
(0.58) 		0.489
(0.816) 		0.89
(1.00) 		0.118
(0.383) 		0.0762
(0.297) 		0.912
(1.00) 		0.254
(0.577) 		0.0596
(0.267) 		1
(1.00)
ALK 40 (8%) 449 0.053
(0.249) 		0.00802
(0.0836) 		0.00114
(0.0268) 		0.966
(1.00) 		0.128
(0.399) 		0.158
(0.448) 		0.403
(0.729) 		0.172
(0.47) 		0.723
(0.991) 		0.145
(0.425) 		0.726
(0.993) 		0.725
(0.992)
SNTN 7 (1%) 482 0.452
(0.778) 		0.0948
(0.337) 		0.0517
(0.245) 		0.615
(0.915) 		0.038
(0.204) 		0.0219
(0.15) 		0.337
(0.665) 		0.381
(0.71) 		0.255
(0.577) 		0.695
(0.969)
ZNF711 11 (2%) 478 0.333
(0.66) 		0.48
(0.808) 		0.676
(0.958) 		0.134
(0.409) 		0.0193
(0.139) 		0.0181
(0.135) 		0.123
(0.39) 		0.42
(0.748) 		0.083
(0.312) 		0.563
(0.873)
CHRM3 15 (3%) 474 0.127
(0.396) 		0.398
(0.723) 		0.938
(1.00) 		0.88
(1.00) 		0.194
(0.497) 		0.0355
(0.195) 		0.0193
(0.139) 		0.317
(0.646) 		0.692
(0.969) 		0.335
(0.663)
GPR87 11 (2%) 478 0.0744
(0.293) 		0.0394
(0.209) 		0.00803
(0.0836) 		0.681
(0.962) 		0.141
(0.417) 		0.19
(0.492) 		0.461
(0.788) 		0.33
(0.657) 		0.784
(1.00) 		0.578
(0.884)
PRKCI 20 (4%) 469 0.0266
(0.165) 		0.0886
(0.323) 		0.0654
(0.276) 		0.16
(0.453) 		0.625
(0.924) 		0.109
(0.366) 		0.0571
(0.26) 		0.00925
(0.0903) 		0.655
(0.942) 		0.0803
(0.305) 		1
(1.00) 		0.379
(0.709)
RPA3 4 (1%) 485 1
(1.00) 		0.689
(0.967) 		0.284
(0.611) 		0.0218
(0.15) 		0.207
(0.514) 		0.128
(0.397) 		0.0438
(0.222) 		0.353
(0.68) 		0.255
(0.577) 		0.112
(0.371)
ELFN2 9 (2%) 480 0.422
(0.75) 		0.446
(0.772) 		0.509
(0.832) 		0.58
(0.885) 		0.227
(0.545) 		0.0354
(0.195) 		0.0834
(0.313) 		0.014
(0.117)
ANAPC4 12 (2%) 477 0.718
(0.987) 		1
(1.00) 		1
(1.00) 		0.612
(0.912) 		0.4
(0.726) 		0.0318
(0.183) 		0.0764
(0.297) 		0.0489
(0.236) 		0.699
(0.971) 		0.374
(0.704)
ITGB8 12 (2%) 477 0.0066
(0.0743) 		0.0711
(0.288) 		0.00326
(0.0514) 		0.681
(0.962) 		0.192
(0.495) 		0.91
(1.00) 		0.382
(0.711) 		0.49
(0.816) 		0.25
(0.576) 		0.142
(0.419) 		0.782
(1.00) 		0.695
(0.969)
RTP3 5 (1%) 484 0.877
(1.00) 		0.449
(0.775) 		0.0844
(0.314) 		0.035
(0.193) 		0.0741
(0.292) 		0.0274
(0.167) 		0.105
(0.358) 		0.875
(1.00)
MTDH 13 (3%) 476 0.404
(0.729) 		0.835
(1.00) 		0.034
(0.189) 		0.582
(0.886) 		0.508
(0.832) 		0.298
(0.627) 		0.629
(0.925) 		0.00658
(0.0743) 		0.457
(0.784) 		0.0784
(0.301) 		0.136
(0.412) 		0.694
(0.969)
GPNMB 14 (3%) 475 0.543
(0.863) 		0.71
(0.981) 		0.141
(0.417) 		0.21
(0.519) 		0.0388
(0.207) 		0.0124
(0.11) 		0.391
(0.716) 		0.134
(0.409) 		0.0601
(0.268) 		1
(1.00)
MAP7D3 23 (5%) 466 0.0224
(0.152) 		0.636
(0.927) 		0.0567
(0.259) 		0.36
(0.689) 		0.484
(0.811) 		0.773
(1.00) 		0.113
(0.373) 		0.0426
(0.218) 		0.873
(1.00) 		0.0825
(0.311) 		0.394
(0.719) 		0.263
(0.588)
ELF3 10 (2%) 479 0.345
(0.672) 		0.0323
(0.184) 		0.579
(0.884) 		0.0381
(0.204) 		0.22
(0.535) 		0.327
(0.656) 		0.0553
(0.256) 		0.0667
(0.278) 		0.255
(0.578) 		0.292
(0.62)
ZNF180 18 (4%) 471 0.00271
(0.0458) 		0.308
(0.637) 		0.0244
(0.158) 		0.686
(0.964) 		0.937
(1.00) 		0.489
(0.816) 		0.714
(0.984) 		0.481
(0.808) 		0.639
(0.927) 		0.331
(0.658)
PLEK 14 (3%) 475 0.00681
(0.0758) 		0.125
(0.392) 		0.0453
(0.226) 		0.634
(0.927) 		0.388
(0.715) 		0.851
(1.00) 		0.408
(0.734) 		0.0931
(0.334) 		0.214
(0.524) 		0.188
(0.489)
MST4 8 (2%) 481 0.869
(1.00) 		0.233
(0.554) 		0.873
(1.00) 		0.115
(0.375) 		0.101
(0.351) 		0.00976
(0.0939) 		0.00446
(0.061) 		0.643
(0.929)
IFIT2 8 (2%) 481 0.12
(0.386) 		0.183
(0.484) 		0.00474
(0.0622) 		0.0762
(0.297) 		0.614
(0.913) 		0.487
(0.814) 		0.272
(0.598) 		0.0698
(0.285) 		0.273
(0.599) 		0.00925
(0.0903) 		0.0843
(0.314) 		1
(1.00)
ZNF197 12 (2%) 477 0.309
(0.637) 		0.833
(1.00) 		0.0161
(0.126) 		0.144
(0.424) 		1
(1.00) 		0.721
(0.99) 		0.144
(0.423) 		0.0532
(0.25) 		0.599
(0.903) 		0.00355
(0.0542) 		0.705
(0.976) 		0.31
(0.637)
NIPA2 8 (2%) 481 0.238
(0.561) 		0.0452
(0.226) 		0.206
(0.512) 		0.111
(0.369) 		0.829
(1.00) 		0.252
(0.577) 		0.0905
(0.328) 		0.255
(0.577) 		0.285
(0.613) 		0.00026
(0.00988)
NSUN2 12 (2%) 477 0.273
(0.599) 		0.256
(0.578) 		0.74
(1.00) 		0.0382
(0.205) 		0.0164
(0.127) 		0.101
(0.352) 		0.183
(0.484) 		0.0502
(0.241) 		0.51
(0.833) 		0.542
(0.862)
CYP4X1 6 (1%) 483 0.905
(1.00) 		0.681
(0.962) 		1
(1.00) 		0.169
(0.465) 		0.0488
(0.236) 		0.117
(0.38) 		0.0303
(0.178) 		0.0656
(0.276) 		0.627
(0.925) 		0.448
(0.775)
PNPLA5 12 (2%) 477 0.00152
(0.032) 		0.0781
(0.301) 		1
(1.00) 		0.841
(1.00) 		0.0559
(0.257) 		1e-05
(0.00111) 		0.142
(0.419) 		0.371
(0.701)
CD101 11 (2%) 478 0.0225
(0.152) 		1
(1.00) 		0.0297
(0.176) 		0.14
(0.417) 		0.306
(0.636) 		0.363
(0.692) 		0.161
(0.454) 		0.315
(0.643) 		0.375
(0.705) 		0.0685
(0.282) 		0.781
(1.00) 		0.311
(0.638)
RHEB 5 (1%) 484 0.637
(0.927) 		0.328
(0.656) 		1
(1.00) 		0.326
(0.656) 		0.0192
(0.139) 		0.0481
(0.234) 		0.407
(0.732) 		0.993
(1.00)
KIAA0406 15 (3%) 474 0.943
(1.00) 		0.118
(0.382) 		0.153
(0.439) 		0.437
(0.764) 		0.282
(0.609) 		0.171
(0.468) 		0.236
(0.557) 		0.0137
(0.115) 		0.194
(0.497) 		0.0133
(0.113) 		0.0887
(0.323) 		0.522
(0.843)
DOCK10 28 (6%) 461 0.0446
(0.225) 		0.234
(0.554) 		0.0236
(0.156) 		0.145
(0.424) 		0.473
(0.801) 		0.254
(0.577) 		0.652
(0.939) 		0.181
(0.481) 		0.909
(1.00) 		0.256
(0.578) 		0.663
(0.949) 		0.767
(1.00)
VAV3 27 (6%) 462 0.0548
(0.254) 		0.431
(0.759) 		0.0032
(0.0508) 		0.285
(0.613) 		0.0127
(0.111) 		0.779
(1.00) 		0.0555
(0.257) 		0.238
(0.561) 		0.219
(0.532) 		0.0579
(0.263) 		0.0518
(0.246) 		0.265
(0.591)
GATA1 17 (3%) 472 0.00582
(0.0691) 		0.253
(0.577) 		0.405
(0.73) 		0.927
(1.00) 		0.933
(1.00) 		0.926
(1.00) 		0.819
(1.00) 		0.0572
(0.261) 		0.0529
(0.249) 		0.0423
(0.217) 		0.872
(1.00) 		0.379
(0.709)
ZNF799 7 (1%) 482 0.377
(0.706) 		0.865
(1.00) 		0.16
(0.451) 		0.0178
(0.133) 		0.313
(0.64) 		0.00785
(0.0829) 		0.661
(0.947) 		0.0557
(0.257)
CLDN10 13 (3%) 476 0.787
(1.00) 		0.348
(0.676) 		0.00853
(0.0861) 		0.308
(0.637) 		0.561
(0.871) 		0.263
(0.588) 		0.674
(0.955) 		0.00235
(0.0416) 		0.747
(1.00) 		0.217
(0.528) 		0.136
(0.412) 		1
(1.00)
IL1RL1 16 (3%) 473 0.318
(0.646) 		0.092
(0.331) 		0.605
(0.906) 		0.455
(0.781) 		0.054
(0.252) 		0.00018
(0.00778) 		0.0526
(0.248) 		0.044
(0.223) 		0.175
(0.474) 		0.341
(0.668)
HDAC5 12 (2%) 477 0.081
(0.307) 		0.306
(0.636) 		0.388
(0.715) 		0.85
(1.00) 		0.149
(0.432) 		6e-05
(0.00366) 		0.125
(0.392) 		0.00568
(0.0683) 		0.0892
(0.324) 		0.755
(1.00)
RANBP1 6 (1%) 483 0.441
(0.768) 		0.288
(0.617) 		0.239
(0.562) 		1
(1.00) 		0.0202
(0.143) 		0.00507
(0.0641) 		0.741
(1.00) 		0.575
(0.882)
WDR66 22 (4%) 467 0.00103
(0.025) 		0.827
(1.00) 		0.00185
(0.0358) 		0.151
(0.436) 		0.661
(0.947) 		0.68
(0.961) 		0.705
(0.976) 		0.0817
(0.309) 		0.558
(0.87) 		0.573
(0.88) 		0.209
(0.517) 		0.791
(1.00)
IRAK3 9 (2%) 480 0.0189
(0.137) 		0.71
(0.981) 		0.735
(1.00) 		0.724
(0.992) 		0.261
(0.584) 		0.0476
(0.233) 		0.489
(0.816) 		0.342
(0.669)
ING2 7 (1%) 482 0.0606
(0.268) 		0.253
(0.577) 		0.238
(0.56) 		1
(1.00) 		0.0334
(0.187) 		0.00065
(0.0183) 		0.385
(0.712) 		0.535
(0.855)
ATP6V1D 6 (1%) 483 0.269
(0.594) 		0.52
(0.841) 		0.328
(0.656) 		0.759
(1.00) 		0.0183
(0.135) 		0.0616
(0.269) 		0.00193
(0.0367) 		0.714
(0.984)
FAM26E 5 (1%) 484 0.0428
(0.219) 		0.389
(0.716) 		0.361
(0.69) 		0.674
(0.955) 		0.114
(0.375) 		0.0015
(0.0317) 		0.128
(0.397) 		0.0548
(0.255)
SAFB 16 (3%) 473 0.0615
(0.269) 		0.231
(0.551) 		0.00364
(0.0549) 		0.533
(0.852) 		0.0512
(0.243) 		0.278
(0.605) 		0.184
(0.484) 		0.046
(0.228) 		0.0709
(0.288) 		0.219
(0.532)
OR4E2 5 (1%) 484 0.0437
(0.222) 		0.196
(0.498) 		0.297
(0.627) 		0.132
(0.406) 		0.115
(0.376) 		0.00122
(0.0281) 		0.508
(0.832) 		0.332
(0.659)
CARD6 18 (4%) 471 0.0225
(0.152) 		0.637
(0.927) 		0.0951
(0.338) 		0.813
(1.00) 		0.85
(1.00) 		0.944
(1.00) 		0.517
(0.839) 		0.0407
(0.212) 		0.87
(1.00) 		0.353
(0.681) 		0.768
(1.00) 		0.359
(0.688)
MORC2 14 (3%) 475 0.222
(0.536) 		0.635
(0.927) 		0.0161
(0.126) 		0.398
(0.724) 		0.392
(0.717) 		0.541
(0.862) 		0.451
(0.776) 		0.0356
(0.196) 		0.641
(0.928) 		0.312
(0.639) 		0.27
(0.595) 		0.673
(0.955)
CYP4A22 13 (3%) 476 0.0328
(0.185) 		1
(1.00) 		0.187
(0.488) 		0.15
(0.433) 		0.149
(0.432) 		0.156
(0.445) 		0.0792
(0.303) 		0.0427
(0.218) 		0.627
(0.925) 		0.13
(0.402)
LPGAT1 4 (1%) 485 0.614
(0.913) 		0.11
(0.368) 		0.831
(1.00) 		0.673
(0.955) 		0.0776
(0.3) 		0.0112
(0.103) 		0.0279
(0.17) 		0.527
(0.847) 		0.0838
(0.313) 		0.841
(1.00)
EEA1 16 (3%) 473 0.699
(0.971) 		0.878
(1.00) 		0.00557
(0.0675) 		0.072
(0.289) 		0.892
(1.00) 		0.54
(0.861) 		0.197
(0.5) 		0.0429
(0.219) 		0.231
(0.551) 		0.148
(0.43)
ADAM22 11 (2%) 478 0.0503
(0.241) 		0.178
(0.477) 		0.0156
(0.124) 		0.07
(0.285) 		0.428
(0.755) 		0.56
(0.871) 		0.135
(0.41) 		0.0356
(0.195) 		0.759
(1.00) 		0.484
(0.811) 		0.0698
(0.285) 		0.55
(0.866)
PPP1R3A 38 (8%) 451 0.00271
(0.0458) 		0.357
(0.686) 		0.136
(0.411) 		1
(1.00) 		0.529
(0.849) 		0.581
(0.886) 		0.713
(0.984) 		0.012
(0.108) 		0.263
(0.588) 		0.49
(0.817) 		0.079
(0.302) 		1
(1.00)
OR4D2 4 (1%) 485 0.537
(0.858) 		0.391
(0.716) 		0.358
(0.687) 		0.183
(0.484) 		0.0378
(0.203) 		0.00281
(0.047) 		1
(1.00) 		0.848
(1.00)
ARNT2 14 (3%) 475 0.0266
(0.165) 		0.255
(0.577) 		0.0869
(0.319) 		0.915
(1.00) 		0.244
(0.569) 		0.366
(0.694) 		0.742
(1.00) 		0.0758
(0.296) 		0.586
(0.891) 		0.0203
(0.143) 		1
(1.00) 		0.375
(0.705)
SPANXN2 8 (2%) 481 0.0178
(0.133) 		0.0131
(0.113) 		0.328
(0.656) 		0.528
(0.848) 		0.143
(0.421) 		1
(1.00) 		0.671
(0.954) 		0.0947
(0.337) 		0.844
(1.00) 		0.518
(0.84)
ICOSLG 5 (1%) 484 0.387
(0.715) 		0.383
(0.712) 		0.373
(0.703) 		1
(1.00) 		0.0189
(0.137) 		0.00457
(0.0614) 		0.634
(0.927) 		0.732
(0.998) 		0.137
(0.413) 		1
(1.00)
THOC6 8 (2%) 481 0.195
(0.498) 		0.877
(1.00) 		1
(1.00) 		1
(1.00) 		0.558
(0.87) 		0.102
(0.353) 		0.0422
(0.217) 		0.00446
(0.061)
FSHR 19 (4%) 470 0.0108
(0.0999) 		0.153
(0.439) 		0.508
(0.832) 		0.0262
(0.164) 		0.21
(0.518) 		0.554
(0.87) 		0.897
(1.00) 		0.445
(0.772) 		0.436
(0.764) 		0.332
(0.66) 		0.0959
(0.339) 		0.426
(0.753)
EIF2B5 16 (3%) 473 0.12
(0.386) 		0.0896
(0.326) 		0.066
(0.276) 		1
(1.00) 		0.752
(1.00) 		0.61
(0.911) 		0.038
(0.204) 		0.248
(0.573) 		0.0397
(0.21) 		0.144
(0.423) 		0.0845
(0.314) 		1
(1.00)
INTS3 8 (2%) 481 0.0654
(0.276) 		0.0136
(0.115) 		0.127
(0.396) 		0.864
(1.00) 		0.617
(0.916) 		1
(1.00) 		0.231
(0.551) 		0.0701
(0.285) 		0.953
(1.00) 		0.0325
(0.184)
DBN1 13 (3%) 476 0.0545
(0.253) 		0.863
(1.00) 		0.286
(0.614) 		0.393
(0.718) 		0.193
(0.496) 		0.00915
(0.0898) 		0.313
(0.641) 		0.0399
(0.21) 		0.0795
(0.304) 		0.157
(0.445)
TFEC 12 (2%) 477 0.0804
(0.306) 		0.309
(0.637) 		0.391
(0.716) 		0.194
(0.497) 		0.0078
(0.0825) 		0.024
(0.157) 		0.897
(1.00) 		0.467
(0.793) 		0.167
(0.462) 		0.447
(0.774)
ZNF83 20 (4%) 469 0.00235
(0.0416) 		0.342
(0.669) 		0.0094
(0.0913) 		0.194
(0.497) 		0.817
(1.00) 		0.807
(1.00) 		0.201
(0.506) 		0.0947
(0.337) 		0.058
(0.263) 		0.495
(0.821) 		0.257
(0.579) 		0.563
(0.873)
CDC27 16 (3%) 473 0.00038
(0.0128) 		0.528
(0.848) 		0.00284
(0.0474) 		0.126
(0.394) 		0.574
(0.881) 		0.56
(0.871) 		0.321
(0.65) 		0.11
(0.368) 		0.528
(0.848) 		0.291
(0.62)
UAP1L1 7 (1%) 482 0.374
(0.704) 		0.012
(0.108) 		0.683
(0.962) 		0.828
(1.00) 		0.567
(0.875) 		0.0183
(0.135) 		0.381
(0.71) 		0.442
(0.769) 		0.78
(1.00) 		1
(1.00)
PCDH20 24 (5%) 465 0.431
(0.758) 		0.124
(0.39) 		0.0979
(0.343) 		0.122
(0.388) 		0.464
(0.791) 		0.957
(1.00) 		0.214
(0.523) 		0.0331
(0.186) 		0.764
(1.00) 		0.00267
(0.0455) 		0.201
(0.506) 		0.799
(1.00)
PDP2 6 (1%) 483 0.0224
(0.152) 		0.63
(0.926) 		1
(1.00) 		1
(1.00) 		0.084
(0.314) 		0.0403
(0.211) 		0.248
(0.573) 		0.15
(0.433)
RARS2 10 (2%) 479 0.0235
(0.156) 		0.64
(0.927) 		0.00591
(0.0698) 		0.0772
(0.3) 		0.545
(0.865) 		1
(1.00) 		0.283
(0.611) 		0.481
(0.809) 		0.737
(1.00) 		0.841
(1.00)
CD55 8 (2%) 481 0.44
(0.767) 		0.0398
(0.21) 		0.209
(0.516) 		0.558
(0.87) 		1
(1.00) 		0.0787
(0.302) 		0.297
(0.626) 		0.0575
(0.261) 		0.846
(1.00) 		0.00096
(0.0237)
PFN4 6 (1%) 483 0.0936
(0.335) 		0.194
(0.497) 		1
(1.00) 		0.404
(0.729) 		0.0352
(0.194) 		0.00502
(0.0638) 		0.26
(0.583) 		0.0959
(0.339)
LAX1 5 (1%) 484 0.0425
(0.218) 		0.556
(0.87) 		0.138
(0.414) 		0.502
(0.829) 		0.19
(0.492) 		0.00055
(0.0165) 		0.688
(0.966) 		0.054
(0.252)
C13ORF23 13 (3%) 476 0.0652
(0.276) 		0.253
(0.577) 		0.122
(0.388) 		0.366
(0.696) 		0.541
(0.862) 		0.283
(0.611) 		0.546
(0.865) 		0.0401
(0.211) 		0.464
(0.791) 		0.0029
(0.0481) 		0.268
(0.594) 		0.643
(0.93)
PTTG1IP 7 (1%) 482 0.0292
(0.175) 		0.445
(0.771) 		0.306
(0.635) 		1
(1.00) 		0.123
(0.389) 		0.0459
(0.228) 		0.35
(0.678) 		0.301
(0.63)
ARFIP1 12 (2%) 477 0.05
(0.24) 		0.554
(0.87) 		0.0165
(0.127) 		0.0685
(0.282) 		0.17
(0.465) 		0.561
(0.871) 		0.0563
(0.258) 		0.0661
(0.277) 		0.746
(1.00) 		0.338
(0.666)
VWCE 15 (3%) 474 0.0636
(0.274) 		0.253
(0.577) 		0.0884
(0.323) 		0.368
(0.698) 		0.298
(0.627) 		0.706
(0.978) 		0.2
(0.503) 		0.022
(0.15) 		0.102
(0.353) 		0.42
(0.748) 		0.465
(0.791) 		0.0337
(0.188)
CXORF38 6 (1%) 483 0.15
(0.433) 		0.139
(0.415) 		0.873
(1.00) 		0.761
(1.00) 		0.00529
(0.0656) 		0.00823
(0.0845) 		0.742
(1.00) 		0.534
(0.854)
C12ORF49 4 (1%) 485 0.735
(1.00) 		0.322
(0.651) 		0.795
(1.00) 		0.0813
(0.308) 		0.0297
(0.176) 		0.00296
(0.0487) 		0.0679
(0.281) 		0.103
(0.356)
OSTM1 5 (1%) 484 0.638
(0.927) 		0.134
(0.409) 		0.298
(0.627) 		0.343
(0.67) 		0.0582
(0.263) 		0.00417
(0.0588) 		0.0283
(0.171) 		0.323
(0.653) 		0.138
(0.414) 		0.14
(0.416)
TXNDC17 5 (1%) 484 0.791
(1.00) 		0.278
(0.606) 		0.552
(0.869) 		0.829
(1.00) 		0.0559
(0.257) 		0.0133
(0.113) 		0.00829
(0.0848) 		0.277
(0.604)
ZNF620 9 (2%) 480 0.0646
(0.275) 		0.183
(0.484) 		0.00158
(0.0328) 		0.385
(0.713) 		0.659
(0.945) 		0.327
(0.656) 		0.0489
(0.236) 		0.126
(0.395) 		0.6
(0.903) 		0.33
(0.657)
RANBP17 12 (2%) 477 0.155
(0.442) 		1
(1.00) 		0.0165
(0.128) 		0.479
(0.807) 		0.287
(0.616) 		0.365
(0.694) 		0.482
(0.809) 		0.00716
(0.078) 		0.343
(0.67) 		0.437
(0.764) 		0.0585
(0.264) 		0.893
(1.00)
AHCTF1 23 (5%) 466 0.0358
(0.196) 		0.133
(0.407) 		0.104
(0.356) 		0.0732
(0.291) 		0.39
(0.716) 		0.674
(0.955) 		0.251
(0.577) 		0.0702
(0.286) 		0.606
(0.907) 		0.265
(0.591) 		0.00746
(0.0802) 		0.952
(1.00)
OR6C1 8 (2%) 481 0.87
(1.00) 		0.664
(0.949) 		0.616
(0.915) 		1
(1.00) 		0.0137
(0.115) 		0.0154
(0.123) 		0.064
(0.275) 		0.728
(0.995) 		0.699
(0.971) 		0.431
(0.759)
ARHGAP11A 16 (3%) 473 0.0724
(0.29) 		0.834
(1.00) 		0.0124
(0.11) 		0.34
(0.667) 		0.63
(0.926) 		0.43
(0.758) 		0.309
(0.637) 		0.0318
(0.183) 		0.0634
(0.273) 		0.0961
(0.34) 		0.0971
(0.341) 		0.87
(1.00)
CCAR1 20 (4%) 469 0.257
(0.579) 		0.641
(0.928) 		0.0268
(0.166) 		0.0983
(0.344) 		0.264
(0.59) 		0.0539
(0.252) 		0.0764
(0.297) 		0.0422
(0.217) 		0.905
(1.00) 		0.636
(0.927) 		0.402
(0.728) 		0.566
(0.874)
PHF1 7 (1%) 482 0.283
(0.611) 		0.877
(1.00) 		1
(1.00) 		0.682
(0.962) 		0.218
(0.532) 		0.00876
(0.0872) 		0.0293
(0.175) 		0.425
(0.752) 		0.135
(0.411) 		1
(1.00)
MYLK4 14 (3%) 475 0.0116
(0.106) 		0.592
(0.896) 		0.876
(1.00) 		0.454
(0.78) 		0.21
(0.519) 		0.0164
(0.127) 		0.0534
(0.25) 		0.177
(0.477) 		0.492
(0.818) 		0.472
(0.801)
GNA11 7 (1%) 482 0.107
(0.361) 		0.139
(0.416) 		0.329
(0.656) 		1
(1.00) 		0.0215
(0.149) 		0.0127
(0.111) 		0.479
(0.807) 		0.41
(0.736) 		0.871
(1.00) 		0.564
(0.873)
SLC22A3 13 (3%) 476 0.0649
(0.276) 		1
(1.00) 		0.00854
(0.0861) 		0.309
(0.637) 		1
(1.00) 		0.194
(0.497) 		0.251
(0.577) 		0.02
(0.142) 		0.635
(0.927) 		0.648
(0.935) 		0.138
(0.414) 		1
(1.00)
NOL9 7 (1%) 482 0.513
(0.835) 		0.0127
(0.111) 		0.614
(0.914) 		0.546
(0.865) 		0.231
(0.551) 		0.0162
(0.126) 		0.862
(1.00) 		0.492
(0.818)
BUB1B 11 (2%) 478 0.027
(0.166) 		0.637
(0.927) 		0.0308
(0.18) 		0.683
(0.963) 		0.384
(0.712) 		0.565
(0.873) 		0.827
(1.00) 		0.725
(0.993) 		0.921
(1.00) 		0.397
(0.723) 		0.872
(1.00) 		0.561
(0.872)
MFSD9 12 (2%) 477 0.065
(0.276) 		1
(1.00) 		0.0472
(0.232) 		0.0777
(0.3) 		0.511
(0.833) 		1
(1.00) 		0.168
(0.463) 		0.00317
(0.0505) 		0.248
(0.573) 		0.595
(0.899) 		0.485
(0.812) 		1
(1.00)
HSPA4L 12 (2%) 477 0.0225
(0.152) 		0.0457
(0.228) 		0.0819
(0.31) 		1
(1.00) 		1
(1.00) 		1
(1.00) 		1
(1.00) 		0.0962
(0.34) 		0.826
(1.00) 		0.236
(0.557)
TBL1XR1 13 (3%) 476 0.0273
(0.167) 		0.0878
(0.321) 		0.00757
(0.0811) 		0.141
(0.418) 		0.777
(1.00) 		0.917
(1.00) 		0.108
(0.363) 		0.0593
(0.267) 		0.303
(0.633) 		0.221
(0.535)
RRS1 4 (1%) 485 0.532
(0.851) 		1
(1.00) 		0.0189
(0.138) 		0.185
(0.485) 		0.14
(0.416) 		0.00573
(0.0686) 		0.6
(0.903) 		0.443
(0.771)
PIGK 12 (2%) 477 0.0163
(0.127) 		0.0407
(0.212) 		0.292
(0.621) 		0.904
(1.00) 		0.701
(0.973) 		0.886
(1.00) 		0.578
(0.884) 		0.149
(0.433) 		0.473
(0.802) 		0.128
(0.397)
COPB2 16 (3%) 473 0.13
(0.401) 		0.635
(0.927) 		0.0558
(0.257) 		1
(1.00) 		0.174
(0.474) 		0.509
(0.832) 		0.673
(0.955) 		0.0151
(0.122) 		0.839
(1.00) 		0.00522
(0.0651) 		0.665
(0.951) 		0.348
(0.676)
CIZ1 16 (3%) 473 0.834
(1.00) 		0.794
(1.00) 		0.053
(0.249) 		0.397
(0.722) 		0.939
(1.00) 		0.0987
(0.345) 		0.283
(0.611) 		0.0991
(0.346) 		0.0381
(0.204) 		0.652
(0.939) 		0.00442
(0.0609) 		0.447
(0.773)
KDM2B 22 (4%) 467 0.212
(0.52) 		0.106
(0.359) 		0.00847
(0.0857) 		0.095
(0.338) 		0.187
(0.487) 		1
(1.00) 		0.32
(0.649) 		0.0004
(0.0132) 		0.0913
(0.329) 		0.079
(0.302) 		0.097
(0.341) 		0.489
(0.816)
SERPINB10 12 (2%) 477 0.0156
(0.124) 		0.556
(0.87) 		0.00829
(0.0848) 		1
(1.00) 		0.832
(1.00) 		1
(1.00) 		0.61
(0.911) 		0.425
(0.752) 		0.438
(0.765) 		0.362
(0.69) 		0.36
(0.688) 		0.869
(1.00)
SIRT4 7 (1%) 482 0.016
(0.125) 		0.554
(0.87) 		0.0101
(0.0962) 		0.777
(1.00) 		0.874
(1.00) 		0.759
(1.00) 		0.474
(0.802) 		0.181
(0.482) 		0.887
(1.00) 		0.507
(0.832)
PRRT2 6 (1%) 483 0.152
(0.437) 		0.0658
(0.276) 		0.358
(0.687) 		0.184
(0.485) 		0.00575
(0.0688) 		0.0014
(0.0305) 		0.149
(0.433) 		0.818
(1.00)
PARP1 15 (3%) 474 0.00189
(0.0361) 		0.639
(0.927) 		0.678
(0.959) 		0.933
(1.00) 		0.131
(0.403) 		0.00375
(0.0556) 		0.84
(1.00) 		0.0865
(0.318) 		0.146
(0.426) 		1
(1.00)
ZKSCAN2 17 (3%) 472 0.00543
(0.0666) 		0.00166
(0.0338) 		0.176
(0.476) 		0.74
(1.00) 		0.268
(0.593) 		0.526
(0.847) 		0.744
(1.00) 		0.0827
(0.311) 		0.707
(0.979) 		0.317
(0.646) 		0.181
(0.481) 		0.293
(0.621)
BST2 6 (1%) 483 0.0935
(0.335) 		0.383
(0.712) 		0.333
(0.66) 		0.0416
(0.215) 		0.104
(0.357) 		0.0103
(0.0973) 		0.181
(0.482) 		0.114
(0.375)
ZNF619 11 (2%) 478 0.0717
(0.289) 		0.0609
(0.268) 		0.00022
(0.00882) 		0.14
(0.416) 		0.216
(0.526) 		0.293
(0.622) 		0.223
(0.537) 		0.00128
(0.029) 		0.23
(0.55) 		0.187
(0.488)
TCEAL5 5 (1%) 484 0.79
(1.00) 		0.388
(0.715) 		1
(1.00) 		0.719
(0.988) 		0.0147
(0.12) 		0.0205
(0.145) 		0.633
(0.927) 		0.272
(0.598) 		0.0601
(0.268) 		0.446
(0.773)
C14ORF39 17 (3%) 472 0.066
(0.277) 		1
(1.00) 		0.0325
(0.184) 		0.291
(0.62) 		0.291
(0.619) 		0.129
(0.4) 		0.317
(0.646) 		0.00472
(0.0621) 		0.675
(0.957) 		0.118
(0.383) 		0.167
(0.462) 		0.253
(0.577)
PHF14 16 (3%) 473 0.0727
(0.291) 		0.177
(0.477) 		0.00544
(0.0666) 		0.239
(0.562) 		0.75
(1.00) 		0.94
(1.00) 		0.0825
(0.311) 		0.00199
(0.0373) 		0.949
(1.00) 		0.172
(0.469) 		0.135
(0.411) 		0.696
(0.969)
POMGNT1 8 (2%) 481 0.0656
(0.276) 		0.681
(0.962) 		0.165
(0.459) 		0.548
(0.866) 		0.541
(0.862) 		0.0191
(0.138) 		0.49
(0.817) 		0.0128
(0.111)
OR2A5 13 (3%) 476 0.0318
(0.183) 		0.554
(0.87) 		0.235
(0.556) 		0.662
(0.948) 		0.0135
(0.114) 		0.0822
(0.31) 		0.934
(1.00) 		0.172
(0.469) 		0.427
(0.754) 		0.122
(0.387) 		0.594
(0.898) 		0.319
(0.648)
HAUS3 10 (2%) 479 0.0082
(0.0844) 		1
(1.00) 		0.163
(0.456) 		0.57
(0.876) 		0.696
(0.969) 		0.404
(0.73) 		1
(1.00) 		0.00589
(0.0696) 		0.804
(1.00) 		0.197
(0.499)
PCSK1 19 (4%) 470 0.00375
(0.0556) 		0.638
(0.927) 		0.0824
(0.311) 		0.0158
(0.125) 		0.451
(0.777) 		0.363
(0.692) 		0.356
(0.685) 		0.125
(0.393) 		0.565
(0.873) 		0.114
(0.375) 		0.354
(0.683) 		0.885
(1.00)
B4GALT6 10 (2%) 479 0.0733
(0.291) 		0.0601
(0.268) 		0.00547
(0.0668) 		0.0762
(0.297) 		0.819
(1.00) 		0.512
(0.834) 		0.265
(0.59) 		0.0692
(0.283) 		0.221
(0.535) 		0.0462
(0.229)
RAD21 17 (3%) 472 0.172
(0.469) 		0.0216
(0.149) 		0.00802
(0.0836) 		0.29
(0.618) 		0.839
(1.00) 		0.833
(1.00) 		0.78
(1.00) 		0.177
(0.477) 		0.576
(0.883) 		0.559
(0.87) 		0.391
(0.716) 		0.756
(1.00)
C6ORF222 6 (1%) 483 0.0644
(0.275) 		0.252
(0.577) 		0.0223
(0.152) 		0.113
(0.373) 		0.376
(0.706) 		1
(1.00) 		0.133
(0.407) 		0.0159
(0.125) 		0.689
(0.967) 		0.0656
(0.276)
KIAA1632 31 (6%) 458 0.00053
(0.0162) 		0.174
(0.472) 		0.0479
(0.233) 		0.751
(1.00) 		0.69
(0.967) 		0.925
(1.00) 		0.198
(0.501) 		0.0787
(0.302) 		0.984
(1.00) 		0.509
(0.832) 		0.103
(0.355) 		0.856
(1.00)
ADK 7 (1%) 482 0.0976
(0.343) 		0.253
(0.577) 		1
(1.00) 		0.684
(0.963) 		0.0101
(0.096) 		0.0252
(0.161) 		0.321
(0.65) 		0.107
(0.361)
MMP7 10 (2%) 479 0.0739
(0.292) 		0.0393
(0.209) 		0.0206
(0.145) 		0.329
(0.656) 		0.6
(0.903) 		0.839
(1.00) 		0.0879
(0.321) 		0.193
(0.496) 		0.436
(0.764) 		0.235
(0.556)
APAF1 20 (4%) 469 0.00727
(0.0787) 		0.00316
(0.0504) 		0.446
(0.773) 		0.0777
(0.3) 		0.642
(0.928) 		1
(1.00) 		0.977
(1.00) 		0.0977
(0.343) 		0.0968
(0.341) 		0.156
(0.444)
ZNF605 8 (2%) 481 0.0378
(0.203) 		0.444
(0.771) 		0.615
(0.914) 		0.775
(1.00) 		0.102
(0.353) 		0.0299
(0.177) 		0.913
(1.00) 		0.435
(0.762) 		0.254
(0.577) 		1
(1.00)
ITPR2 28 (6%) 461 0.0104
(0.0978) 		0.598
(0.901) 		0.00209
(0.0385) 		0.265
(0.59) 		0.0759
(0.296) 		0.718
(0.987) 		0.688
(0.965) 		0.117
(0.38) 		0.707
(0.978) 		0.0956
(0.339) 		0.0859
(0.317) 		0.693
(0.969)
INADL 16 (3%) 473 0.371
(0.701) 		0.557
(0.87) 		0.0013
(0.0292) 		0.0462
(0.229) 		0.478
(0.806) 		0.393
(0.718) 		0.0863
(0.318) 		0.0811
(0.308) 		0.548
(0.866) 		0.568
(0.875) 		0.593
(0.897) 		1
(1.00)
SLC38A9 12 (2%) 477 0.0727
(0.29) 		0.555
(0.87) 		0.00023
(0.00909) 		0.0783
(0.301) 		0.319
(0.648) 		0.918
(1.00) 		0.0694
(0.284) 		0.00449
(0.0611) 		0.599
(0.902) 		0.0874
(0.32)
SLCO1B1 23 (5%) 466 0.0412
(0.214) 		0.431
(0.758) 		0.199
(0.502) 		0.636
(0.927) 		0.865
(1.00) 		0.536
(0.855) 		0.609
(0.91) 		0.0346
(0.192) 		0.407
(0.733) 		0.0852
(0.316) 		0.55
(0.867) 		0.302
(0.631)
GPSM2 13 (3%) 476 0.0105
(0.0984) 		0.311
(0.639) 		0.808
(1.00) 		0.501
(0.828) 		0.0851
(0.316) 		0.00601
(0.0706) 		0.337
(0.665) 		0.622
(0.92) 		0.193
(0.497) 		0.671
(0.954)
SMARCB1 24 (5%) 465 0.32
(0.649) 		0.121
(0.387) 		0.318
(0.647) 		0.882
(1.00) 		0.339
(0.666) 		0.597
(0.9) 		0.00117
(0.0273) 		0.0137
(0.115) 		0.0627
(0.272) 		0.139
(0.415) 		0.703
(0.975) 		0.194
(0.497)
KIAA0528 17 (3%) 472 0.256
(0.578) 		0.638
(0.927) 		0.0008
(0.021) 		0.689
(0.966) 		0.392
(0.717) 		0.123
(0.389) 		0.755
(1.00) 		0.01
(0.0958) 		0.773
(1.00) 		0.908
(1.00) 		0.78
(1.00) 		1
(1.00)
GABPA 12 (2%) 477 0.0732
(0.291) 		0.0613
(0.269) 		0.0152
(0.123) 		0.32
(0.649) 		0.12
(0.385) 		1
(1.00) 		0.856
(1.00) 		0.0329
(0.185) 		0.222
(0.536) 		0.241
(0.564) 		0.666
(0.951) 		0.346
(0.673)
STAU2 10 (2%) 479 0.12
(0.386) 		0.252
(0.577) 		0.0112
(0.103) 		0.204
(0.51) 		0.0242
(0.158) 		0.545
(0.864) 		0.519
(0.84) 		0.0789
(0.302) 		0.471
(0.799) 		0.868
(1.00) 		0.0836
(0.313) 		0.841
(1.00)
STK35 6 (1%) 483 0.0223
(0.152) 		0.385
(0.712) 		0.105
(0.359) 		0.1
(0.348) 		0.0831
(0.312) 		0.045
(0.225) 		0.742
(1.00) 		0.509
(0.832)
ZNF43 22 (4%) 467 0.00331
(0.0517) 		0.0689
(0.283) 		0.145
(0.425) 		1
(1.00) 		0.39
(0.716) 		0.581
(0.886) 		0.25
(0.576) 		0.728
(0.995) 		0.942
(1.00) 		0.175
(0.474) 		0.00166
(0.0338) 		0.822
(1.00)
NFASC 35 (7%) 454 0.0632
(0.273) 		0.0556
(0.257) 		0.0248
(0.159) 		0.913
(1.00) 		0.138
(0.414) 		0.732
(0.999) 		0.43
(0.758) 		0.502
(0.829) 		0.559
(0.87) 		0.352
(0.679) 		0.0241
(0.157) 		1
(1.00)
ACTA1 14 (3%) 475 0.123
(0.39) 		0.184
(0.484) 		0.00635
(0.0732) 		0.307
(0.637) 		0.525
(0.846) 		0.926
(1.00) 		0.405
(0.73) 		0.00231
(0.0413) 		0.0956
(0.339) 		0.59
(0.894) 		0.49
(0.817) 		0.893
(1.00)
COL6A5 36 (7%) 453 0.0711
(0.288) 		0.549
(0.866) 		0.0114
(0.104) 		0.196
(0.498) 		0.0532
(0.25) 		0.941
(1.00) 		0.155
(0.442) 		0.00013
(0.00626) 		0.465
(0.792) 		0.0973
(0.342) 		0.203
(0.51) 		0.763
(1.00)
RAB3C 15 (3%) 474 0.788
(1.00) 		1
(1.00) 		0.0398
(0.21) 		0.0267
(0.165) 		0.939
(1.00) 		0.715
(0.986) 		0.321
(0.65) 		0.753
(1.00) 		0.174
(0.473) 		0.832
(1.00) 		0.628
(0.925) 		0.841
(1.00)
AP1M1 9 (2%) 480 0.461
(0.788) 		0.635
(0.927) 		0.903
(1.00) 		0.895
(1.00) 		0.259
(0.583) 		0.044
(0.223) 		0.0825
(0.311) 		0.162
(0.455) 		0.00417
(0.0588) 		0.842
(1.00)
KRT222 8 (2%) 481 0.00799
(0.0836) 		1
(1.00) 		0.00573
(0.0686) 		0.385
(0.713) 		0.386
(0.713) 		0.159
(0.451) 		1
(1.00) 		0.236
(0.557) 		0.827
(1.00) 		0.971
(1.00) 		0.483
(0.81) 		0.252
(0.577)
RDBP 7 (1%) 482 0.01
(0.0955) 		0.0663
(0.277) 		0.687
(0.965) 		0.402
(0.727) 		0.0834
(0.313) 		0.00521
(0.065) 		0.327
(0.656) 		0.416
(0.744)
PEBP4 7 (1%) 482 0.0979
(0.343) 		0.232
(0.552) 		0.509
(0.832) 		0.577
(0.884) 		0.0216
(0.149) 		0.00105
(0.0253) 		0.368
(0.698) 		0.441
(0.768)
SAMD9L 30 (6%) 459 0.0735
(0.291) 		0.259
(0.583) 		0.008
(0.0836) 		0.704
(0.975) 		0.436
(0.763) 		0.0586
(0.264) 		0.659
(0.945) 		0.203
(0.509) 		0.724
(0.992) 		0.476
(0.805) 		0.598
(0.901) 		0.00628
(0.0727)
DIMT1L 6 (1%) 483 0.443
(0.77) 		0.289
(0.618) 		0.873
(1.00) 		1
(1.00) 		0.0487
(0.236) 		0.021
(0.146) 		0.247
(0.572) 		0.275
(0.601)
NR3C1 10 (2%) 479 0.00866
(0.0867) 		1
(1.00) 		0.288
(0.617) 		0.0491
(0.237) 		0.277
(0.604) 		0.638
(0.927) 		0.655
(0.942) 		0.162
(0.455) 		0.393
(0.718) 		0.376
(0.706) 		0.389
(0.716) 		0.0957
(0.339)
POLDIP3 7 (1%) 482 0.0737
(0.292) 		0.177
(0.477) 		0.0058
(0.0689) 		0.173
(0.47) 		0.343
(0.67) 		0.324
(0.653) 		0.0586
(0.264) 		0.436
(0.764) 		0.00357
(0.0544)
TAF6 10 (2%) 479 0.016
(0.125) 		0.0402
(0.211) 		0.206
(0.512) 		0.593
(0.897) 		0.0698
(0.285) 		0.0703
(0.286) 		0.614
(0.914) 		0.105
(0.358) 		0.421
(0.748) 		0.477
(0.806)
CHRNA3 11 (2%) 478 0.282
(0.61) 		0.305
(0.635) 		0.466
(0.793) 		0.239
(0.562) 		0.0503
(0.241) 		0.00661
(0.0744) 		0.00592
(0.0698) 		0.402
(0.727) 		0.304
(0.634) 		0.191
(0.493)
ADH7 7 (1%) 482 0.00787
(0.083) 		1
(1.00) 		0.022
(0.151) 		1
(1.00) 		0.0643
(0.275) 		0.777
(1.00) 		0.312
(0.639) 		0.184
(0.485) 		0.902
(1.00) 		0.185
(0.485)
AIM2 9 (2%) 480 0.0179
(0.134) 		0.0792
(0.303) 		0.175
(0.475) 		0.0584
(0.264) 		0.26
(0.583) 		0.0163
(0.127) 		0.695
(0.969) 		0.178
(0.477)
DNAJC7 8 (2%) 481 0.0647
(0.275) 		1
(1.00) 		0.00469
(0.0619) 		0.197
(0.499) 		0.436
(0.763) 		0.68
(0.961) 		0.272
(0.597) 		0.0194
(0.139) 		0.844
(1.00) 		0.105
(0.358)
TXLNG 10 (2%) 479 0.0271
(0.167) 		0.253
(0.577) 		0.00073
(0.0199) 		0.329
(0.656) 		0.277
(0.604) 		0.0596
(0.267) 		0.113
(0.373) 		0.223
(0.538) 		0.584
(0.888) 		0.151
(0.435)
RCOR3 13 (3%) 476 0.178
(0.477) 		0.255
(0.578) 		0.0455
(0.227) 		0.129
(0.4) 		0.304
(0.634) 		0.365
(0.694) 		0.0972
(0.342) 		0.014
(0.117) 		0.245
(0.569) 		0.207
(0.514) 		0.871
(1.00) 		1
(1.00)
MFAP1 5 (1%) 484 0.0763
(0.297) 		1
(1.00) 		0.686
(0.964) 		0.326
(0.655) 		0.00666
(0.0747) 		0.0202
(0.143) 		0.129
(0.4) 		0.695
(0.969)
RNF215 3 (1%) 486 0.663
(0.949) 		0.78
(1.00) 		0.336
(0.664) 		1
(1.00) 		0.12
(0.386) 		0.00662
(0.0745) 		0.22
(0.533) 		0.0359
(0.197)
F2R 11 (2%) 478 0.0333
(0.187) 		0.403
(0.729) 		0.211
(0.52) 		0.74
(1.00) 		0.0512
(0.244) 		0.0419
(0.216) 		0.0931
(0.334) 		0.664
(0.949)
CYP20A1 8 (2%) 481 0.00337
(0.0525) 		0.682
(0.962) 		0.875
(1.00) 		0.863
(1.00) 		0.56
(0.871) 		0.0482
(0.234) 		0.634
(0.927) 		0.706
(0.978)
TCF7 12 (2%) 477 0.132
(0.405) 		0.115
(0.376) 		0.00013
(0.00626) 		0.0252
(0.161) 		0.424
(0.752) 		0.542
(0.862) 		0.0741
(0.292) 		0.141
(0.417) 		0.539
(0.859) 		0.414
(0.741)
PREX2 35 (7%) 454 0.0549
(0.255) 		0.0167
(0.128) 		0.197
(0.499) 		0.488
(0.815) 		0.101
(0.351) 		0.786
(1.00) 		0.186
(0.486) 		0.0181
(0.135) 		0.149
(0.432) 		0.375
(0.705) 		0.367
(0.696) 		0.618
(0.916)
DLEC1 19 (4%) 470 0.121
(0.387) 		0.254
(0.577) 		0.0148
(0.121) 		0.445
(0.772) 		1
(1.00) 		0.69
(0.967) 		0.155
(0.442) 		0.00409
(0.0583) 		0.36
(0.689) 		0.129
(0.4) 		0.0573
(0.261) 		0.428
(0.755)
STK38 11 (2%) 478 0.0722
(0.29) 		0.114
(0.375) 		0.463
(0.789) 		0.0792
(0.303) 		0.00936
(0.0911) 		0.00577
(0.0688) 		0.184
(0.484) 		0.141
(0.417) 		0.146
(0.427) 		0.768
(1.00)
ARID5A 8 (2%) 481 0.208
(0.515) 		0.636
(0.927) 		0.616
(0.915) 		0.19
(0.492) 		0.145
(0.425) 		0.00186
(0.0359) 		0.205
(0.512) 		0.504
(0.831) 		0.00446
(0.061) 		0.562
(0.872)
BEND2 23 (5%) 466 0.00063
(0.0181) 		0.00126
(0.0287) 		0.117
(0.381) 		0.6
(0.904) 		0.791
(1.00) 		0.613
(0.913) 		0.99
(1.00) 		0.24
(0.563) 		0.922
(1.00) 		0.546
(0.865) 		0.783
(1.00) 		1
(1.00)
KLF3 7 (1%) 482 0.327
(0.656) 		0.196
(0.498) 		0.298
(0.627) 		0.0094
(0.0913) 		0.189
(0.491) 		0.022
(0.15) 		0.904
(1.00) 		0.385
(0.712)
SENP8 4 (1%) 485 0.121
(0.387) 		0.556
(0.87) 		0.359
(0.687) 		0.83
(1.00) 		0.0102
(0.0968) 		0.00324
(0.0512) 		0.214
(0.524) 		0.784
(1.00)
KRT9 13 (3%) 476 0.222
(0.537) 		0.739
(1.00) 		0.00745
(0.0802) 		0.0613
(0.269) 		0.268
(0.594) 		0.186
(0.487) 		0.0806
(0.306) 		0.164
(0.458) 		0.2
(0.504) 		0.0101
(0.0962)
CROT 11 (2%) 478 0.0737
(0.292) 		0.178
(0.478) 		0.625
(0.923) 		0.712
(0.983) 		0.0321
(0.183) 		0.404
(0.729) 		0.606
(0.907) 		0.25
(0.576) 		0.882
(1.00) 		0.728
(0.995) 		0.0243
(0.158) 		0.765
(1.00)
SMO 13 (3%) 476 0.351
(0.678) 		0.163
(0.456) 		0.203
(0.51) 		0.917
(1.00) 		0.00102
(0.0248) 		0.0339
(0.189) 		0.152
(0.438) 		0.237
(0.56) 		0.28
(0.608) 		0.121
(0.387)
ALCAM 12 (2%) 477 0.48
(0.808) 		0.61
(0.91) 		0.539
(0.86) 		0.783
(1.00) 		0.15
(0.433) 		0.0487
(0.236) 		0.034
(0.189) 		0.317
(0.646) 		0.0579
(0.263) 		0.291
(0.62)
CDKL2 11 (2%) 478 0.0158
(0.125) 		0.233
(0.553) 		0.0299
(0.177) 		0.183
(0.484) 		0.795
(1.00) 		0.885
(1.00) 		0.51
(0.832) 		0.559
(0.871) 		0.426
(0.753) 		0.11
(0.367)
SULT1C4 3 (1%) 486 0.00838
(0.0852) 		0.0132
(0.113) 		0.276
(0.603) 		0.896
(1.00) 		0.311
(0.638)
C6ORF146 8 (2%) 481 0.0645
(0.275) 		0.183
(0.484) 		0.00472
(0.0621) 		0.385
(0.713) 		0.0705
(0.286) 		0.895
(1.00) 		0.29
(0.618) 		0.0188
(0.137) 		0.483
(0.81) 		0.0793
(0.303)
BRD2 12 (2%) 477 0.0727
(0.291) 		0.555
(0.87) 		0.00197
(0.0373) 		0.179
(0.479) 		0.19
(0.491) 		0.3
(0.629) 		0.359
(0.688) 		0.2
(0.505) 		0.639
(0.927) 		0.0436
(0.221)
WFDC10B 5 (1%) 484 0.491
(0.817) 		0.866
(1.00) 		0.73
(0.997) 		0.421
(0.748) 		0.0308
(0.18) 		0.0298
(0.177) 		0.632
(0.927) 		0.162
(0.456)
HSPBAP1 8 (2%) 481 0.591
(0.896) 		0.232
(0.552) 		0.615
(0.914) 		0.364
(0.692) 		0.101
(0.35) 		0.00201
(0.0376) 		0.0108
(0.1) 		0.173
(0.471) 		0.0657
(0.276) 		0.176
(0.475)
NXPH1 9 (2%) 480 0.00783
(0.0827) 		1
(1.00) 		0.334
(0.662) 		0.137
(0.413) 		0.909
(1.00) 		0.328
(0.656) 		0.259
(0.583) 		0.0311
(0.181) 		0.683
(0.963) 		0.107
(0.361) 		0.666
(0.951) 		1
(1.00)
ATP10B 17 (3%) 472 0.119
(0.384) 		0.185
(0.485) 		0.167
(0.461) 		0.834
(1.00) 		0.71
(0.981) 		0.941
(1.00) 		0.201
(0.507) 		0.00563
(0.0679) 		0.0384
(0.206) 		0.161
(0.453) 		0.306
(0.635) 		0.578
(0.884)
KCNN4 7 (1%) 482 0.351
(0.678) 		0.204
(0.511) 		0.376
(0.706) 		0.17
(0.466) 		0.23
(0.55) 		0.0408
(0.213) 		0.0721
(0.289) 		0.00054
(0.0164)
NOVA1 19 (4%) 470 0.104
(0.357) 		0.655
(0.941) 		0.0932
(0.334) 		0.568
(0.875) 		0.904
(1.00) 		1
(1.00) 		0.103
(0.356) 		0.0406
(0.212) 		0.878
(1.00) 		0.0447
(0.225) 		0.41
(0.736) 		0.731
(0.998)
AGXT2L1 13 (3%) 476 0.0589
(0.265) 		0.242
(0.566) 		0.0233
(0.155) 		0.069
(0.283) 		0.205
(0.511) 		1
(1.00) 		0.035
(0.194) 		0.0595
(0.267) 		0.46
(0.787) 		0.385
(0.712)
PROM1 16 (3%) 473 0.00823
(0.0845) 		1
(1.00) 		0.426
(0.753) 		0.936
(1.00) 		0.32
(0.649) 		0.821
(1.00) 		0.28
(0.608) 		0.00105
(0.0253) 		0.614
(0.914) 		0.0878
(0.321) 		0.866
(1.00) 		0.294
(0.622)
CCDC141 23 (5%) 466 0.00878
(0.0873) 		0.124
(0.39) 		0.199
(0.503) 		0.637
(0.927) 		0.864
(1.00) 		0.95
(1.00) 		0.745
(1.00) 		0.0238
(0.157) 		0.38
(0.709) 		0.692
(0.968)
CSPP1 18 (4%) 471 0.0265
(0.165) 		0.738
(1.00) 		0.0436
(0.221) 		0.526
(0.847) 		0.166
(0.46) 		0.636
(0.927) 		0.506
(0.832) 		0.102
(0.352) 		1
(1.00) 		0.129
(0.4) 		0.726
(0.993) 		0.789
(1.00)
CDS2 10 (2%) 479 0.0165
(0.127) 		0.0608
(0.268) 		0.0566
(0.259) 		0.0546
(0.254) 		0.509
(0.832) 		1
(1.00) 		0.826
(1.00) 		0.0153
(0.123) 		0.65
(0.937) 		0.0589
(0.265)
TMEM195 9 (2%) 480 0.0402
(0.211) 		0.678
(0.959) 		0.0231
(0.154) 		0.384
(0.712) 		1
(1.00) 		0.307
(0.636) 		0.377
(0.706) 		0.178
(0.477) 		0.219
(0.532) 		0.177
(0.477)
ABCG2 15 (3%) 474 0.0616
(0.269) 		0.545
(0.864) 		0.0276
(0.168) 		0.446
(0.773) 		0.018
(0.134) 		0.215
(0.525) 		0.584
(0.889) 		0.208
(0.515) 		1
(1.00) 		0.0675
(0.279) 		0.168
(0.462) 		0.0683
(0.281)
TMEM168 16 (3%) 473 0.00592
(0.0698) 		0.579
(0.884) 		0.00066
(0.0185) 		0.438
(0.764) 		1
(1.00) 		0.936
(1.00) 		0.199
(0.503) 		0.293
(0.621) 		0.863
(1.00) 		0.0544
(0.253)
ARHGAP25 12 (2%) 477 0.785
(1.00) 		0.35
(0.678) 		0.568
(0.875) 		0.0328
(0.185) 		0.0261
(0.164) 		0.784
(1.00) 		0.536
(0.856) 		0.245
(0.57) 		0.951
(1.00) 		0.379
(0.709) 		0.357
(0.686) 		0.149
(0.433)
ZSCAN20 17 (3%) 472 0.183
(0.484) 		0.795
(1.00) 		0.483
(0.81) 		0.0178
(0.133) 		0.349
(0.677) 		0.667
(0.951) 		0.0183
(0.135) 		0.181
(0.482) 		0.952
(1.00) 		0.401
(0.727) 		0.207
(0.513) 		0.838
(1.00)
XKR3 15 (3%) 474 0.0739
(0.292) 		0.556
(0.87) 		0.0203
(0.144) 		1
(1.00) 		0.0246
(0.159) 		0.782
(1.00) 		0.865
(1.00) 		0.349
(0.677) 		0.436
(0.763) 		0.596
(0.899) 		0.0849
(0.315) 		0.841
(1.00)
AAMP 3 (1%) 486 0.278
(0.605) 		0.519
(0.84) 		0.609
(0.91) 		0.423
(0.751) 		0.0477
(0.233) 		0.00171
(0.0343) 		0.216
(0.528) 		0.649
(0.936) 		0.136
(0.411) 		1
(1.00)
MBP 6 (1%) 483 0.12
(0.386) 		0.252
(0.577) 		0.0228
(0.153) 		0.513
(0.835) 		0.507
(0.832) 		1
(1.00) 		0.507
(0.832) 		0.0165
(0.127) 		0.886
(1.00) 		0.098
(0.343)
ZNF512 3 (1%) 486 0.0532
(0.25) 		0.295
(0.624) 		0.184
(0.484) 		0.00825
(0.0846) 		0.0653
(0.276) 		0.0485
(0.235)
CD79A 6 (1%) 483 0.12
(0.386) 		0.0138
(0.115) 		0.0925
(0.332) 		0.778
(1.00) 		0.875
(1.00) 		0.493
(0.819) 		0.509
(0.832) 		0.294
(0.623) 		0.509
(0.832) 		0.0247
(0.159)
OR8K3 12 (2%) 477 0.00173
(0.0344) 		0.555
(0.87) 		0.224
(0.539) 		0.0198
(0.141) 		0.153
(0.439) 		0.896
(1.00) 		0.427
(0.754) 		0.178
(0.477) 		0.771
(1.00) 		0.655
(0.942) 		0.252
(0.577) 		0.563
(0.873)
ITGA4 17 (3%) 472 0.0298
(0.177) 		0.879
(1.00) 		0.0534
(0.25) 		0.465
(0.792) 		0.94
(1.00) 		0.555
(0.87) 		0.603
(0.905) 		0.087
(0.319) 		0.576
(0.882) 		0.141
(0.418) 		0.00145
(0.0311) 		0.148
(0.431)
C6ORF150 10 (2%) 479 0.0159
(0.125) 		0.555
(0.87) 		0.275
(0.602) 		0.139
(0.415) 		0.604
(0.905) 		0.763
(1.00) 		0.0164
(0.127) 		0.161
(0.454) 		0.6
(0.904) 		0.883
(1.00)
FAM151A 6 (1%) 483 0.0124
(0.11) 		0.329
(0.656) 		0.0781
(0.301) 		0.762
(1.00) 		0.0842
(0.314) 		0.045
(0.225) 		0.569
(0.876) 		0.356
(0.684)
DZIP1L 16 (3%) 473 0.22
(0.535) 		0.739
(1.00) 		0.0339
(0.189) 		1
(1.00) 		0.0694
(0.284) 		0.362
(0.691) 		0.853
(1.00) 		0.0621
(0.271) 		0.352
(0.68) 		0.105
(0.358) 		0.00291
(0.0482) 		0.892
(1.00)
GSG2 6 (1%) 483 0.0122
(0.109) 		0.0371
(0.201) 		0.733
(0.999) 		1
(1.00) 		0.241
(0.564) 		0.0603
(0.268) 		0.509
(0.832) 		0.979
(1.00)
TAF1 26 (5%) 463 0.0149
(0.121) 		0.599
(0.902) 		0.215
(0.525) 		0.191
(0.493) 		0.473
(0.802) 		0.583
(0.887) 		0.486
(0.813) 		0.0439
(0.222) 		0.623
(0.921) 		0.07
(0.285) 		0.483
(0.81) 		0.126
(0.395)
ITPRIPL1 8 (2%) 481 0.206
(0.513) 		0.028
(0.17) 		0.264
(0.59) 		0.363
(0.692) 		0.0663
(0.277) 		0.03
(0.177) 		0.437
(0.764) 		0.296
(0.625)
GOT1 6 (1%) 483 0.0263
(0.164) 		0.74
(1.00) 		0.102
(0.353) 		0.17
(0.467) 		0.342
(0.668) 		0.195
(0.498) 		0.749
(1.00) 		0.334
(0.662) 		0.0472
(0.232)
SRGAP3 19 (4%) 470 0.106
(0.359) 		0.0572
(0.261) 		0.146
(0.426) 		0.164
(0.458) 		0.394
(0.719) 		0.507
(0.832) 		0.0998
(0.348) 		0.001
(0.0245) 		0.0967
(0.341) 		0.00011
(0.00558) 		0.0955
(0.338) 		0.87
(1.00)
CATSPER4 13 (3%) 476 0.818
(1.00) 		0.638
(0.927) 		0.0109
(0.101) 		0.115
(0.376) 		0.189
(0.49) 		0.301
(0.63) 		0.0259
(0.163) 		0.29
(0.618) 		0.183
(0.484) 		0.161
(0.454) 		0.872
(1.00) 		0.562
(0.873)
SF3B2 10 (2%) 479 0.00457
(0.0614) 		0.396
(0.721) 		0.245
(0.569) 		0.481
(0.809) 		0.107
(0.361) 		0.0156
(0.124) 		0.084
(0.314) 		0.199
(0.503) 		0.135
(0.411) 		1
(1.00)
ZNF232 4 (1%) 485 0.342
(0.669) 		1
(1.00) 		0.166
(0.46) 		0.667
(0.952) 		0.0292
(0.175) 		0.0475
(0.233) 		1
(1.00) 		0.88
(1.00)
IFITM5 4 (1%) 485 0.863
(1.00) 		0.324
(0.653) 		0.167
(0.461) 		0.402
(0.727) 		0.0382
(0.205) 		0.0207
(0.145) 		0.212
(0.521) 		0.31
(0.637)
APLP1 17 (3%) 472 0.438
(0.765) 		0.0298
(0.177) 		0.0315
(0.182) 		0.819
(1.00) 		0.61
(0.911) 		0.86
(1.00) 		0.0784
(0.301) 		0.521
(0.843) 		0.103
(0.355) 		0.432
(0.76)
PCSK5 15 (3%) 474 0.0222
(0.151) 		0.0877
(0.321) 		0.0557
(0.257) 		0.764
(1.00) 		0.0248
(0.159) 		0.635
(0.927) 		0.663
(0.949) 		0.233
(0.552) 		0.782
(1.00) 		0.146
(0.426) 		0.873
(1.00) 		0.696
(0.969)
DYRK3 16 (3%) 473 0.0983
(0.344) 		0.0724
(0.29) 		0.00022
(0.00882) 		0.437
(0.764) 		0.736
(1.00) 		0.361
(0.689) 		0.379
(0.708) 		0.0378
(0.203) 		0.225
(0.541) 		0.425
(0.753)
ZBTB24 11 (2%) 478 0.00808
(0.0838) 		1
(1.00) 		0.408
(0.734) 		1
(1.00) 		1
(1.00) 		0.147
(0.429) 		0.948
(1.00) 		0.0503
(0.241) 		0.682
(0.962) 		0.0452
(0.226) 		1
(1.00) 		1
(1.00)
TNRC6B 23 (5%) 466 0.384
(0.712) 		1
(1.00) 		0.00023
(0.00909) 		0.194
(0.497) 		0.754
(1.00) 		0.906
(1.00) 		0.0631
(0.273) 		0.0674
(0.279) 		0.804
(1.00) 		0.0161
(0.126) 		0.393
(0.718) 		1
(1.00)
OR5AK2 9 (2%) 480 0.121
(0.387) 		0.253
(0.577) 		0.748
(1.00) 		1
(1.00) 		0.732
(0.999) 		0.808
(1.00) 		0.714
(0.984) 		0.038
(0.204) 		0.807
(1.00) 		0.0411
(0.214) 		0.146
(0.427) 		1
(1.00)
ARHGEF6 15 (3%) 474 0.0146
(0.12) 		0.105
(0.358) 		0.00246
(0.0431) 		0.606
(0.906) 		0.139
(0.415) 		0.5
(0.826) 		0.698
(0.971) 		0.155
(0.442) 		0.652
(0.939) 		0.269
(0.594)
GJA10 14 (3%) 475 0.00366
(0.0549) 		1
(1.00) 		0.00103
(0.025) 		0.328
(0.656) 		0.274
(0.6) 		0.128
(0.397) 		0.962
(1.00) 		0.474
(0.802) 		0.213
(0.522) 		0.77
(1.00)
ZNF323 11 (2%) 478 0.442
(0.769) 		0.583
(0.887) 		0.696
(0.969) 		0.822
(1.00) 		0.571
(0.878) 		0.0301
(0.177) 		0.713
(0.983) 		0.697
(0.97) 		0.00855
(0.0862) 		1
(1.00)
ACRC 15 (3%) 474 0.0579
(0.262) 		0.0718
(0.289) 		0.0418
(0.215) 		1
(1.00) 		0.297
(0.626) 		0.188
(0.49) 		0.426
(0.753) 		0.338
(0.666) 		0.227
(0.544) 		0.0417
(0.215)
SLC25A40 5 (1%) 484 0.00813
(0.0841) 		1
(1.00) 		0.0432
(0.22) 		0.633
(0.927) 		0.594
(0.898) 		0.687
(0.965) 		0.455
(0.782) 		1
(1.00) 		0.283
(0.611)
DHX32 12 (2%) 477 0.119
(0.384) 		0.184
(0.485) 		0.483
(0.81) 		0.0954
(0.338) 		0.39
(0.716) 		0.787
(1.00) 		0.0279
(0.17) 		0.116
(0.378) 		0.598
(0.901) 		0.0417
(0.215) 		0.358
(0.687) 		0.869
(1.00)
ZNF124 8 (2%) 481 0.0049
(0.0634) 		0.18
(0.479) 		0.176
(0.475) 		1
(1.00) 		0.082
(0.31) 		0.0153
(0.123) 		0.383
(0.712) 		0.907
(1.00)
SLC38A5 6 (1%) 483 0.906
(1.00) 		0.196
(0.498) 		1
(1.00) 		0.826
(1.00) 		0.0352
(0.194) 		0.00208
(0.0384) 		0.183
(0.484) 		0.656
(0.943)
WEE2 10 (2%) 479 0.0208
(0.146) 		1
(1.00) 		0.0813
(0.308) 		0.328
(0.656) 		0.309
(0.637) 		0.0364
(0.198) 		0.259
(0.583) 		0.0617
(0.27)
ZNF7 14 (3%) 475 0.0224
(0.152) 		0.74
(1.00) 		0.0119
(0.107) 		0.127
(0.396) 		0.201
(0.506) 		0.849
(1.00) 		0.47
(0.797) 		0.292
(0.62) 		0.618
(0.916) 		0.805
(1.00) 		0.7
(0.972) 		1
(1.00)
LDLRAD3 6 (1%) 483 0.0227
(0.153) 		0.393
(0.718) 		0.732
(0.998) 		0.0428
(0.219) 		0.241
(0.565) 		0.0873
(0.32) 		0.0591
(0.266) 		0.0576
(0.262)
PLD5 15 (3%) 474 0.179
(0.478) 		0.0452
(0.226) 		0.315
(0.644) 		0.851
(1.00) 		0.188
(0.49) 		0.841
(1.00) 		0.827
(1.00) 		0.0986
(0.345) 		0.561
(0.872) 		0.0301
(0.177) 		0.085
(0.315) 		0.138
(0.414)
SON 24 (5%) 465 0.465
(0.791) 		0.0975
(0.343) 		0.0193
(0.139) 		0.527
(0.848) 		0.639
(0.927) 		0.775
(1.00) 		0.441
(0.768) 		0.106
(0.36) 		0.328
(0.656) 		0.281
(0.609) 		0.00072
(0.0198) 		0.672
(0.955)
SPATA16 12 (2%) 477 0.0591
(0.266) 		0.0159
(0.125) 		0.0455
(0.227) 		0.527
(0.847) 		0.203
(0.509) 		0.916
(1.00) 		0.52
(0.842) 		0.146
(0.426) 		0.854
(1.00) 		0.0785
(0.302) 		0.0843
(0.314) 		0.448
(0.774)
MFRP 12 (2%) 477 0.0013
(0.0292) 		0.0548
(0.255) 		0.199
(0.503) 		0.848
(1.00) 		0.0559
(0.257) 		0.00675
(0.0753) 		0.0969
(0.341) 		0.0598
(0.267) 		0.628
(0.925) 		0.697
(0.97)
PIGN 9 (2%) 480 0.122
(0.388) 		0.185
(0.485) 		0.0236
(0.156) 		0.327
(0.656) 		1
(1.00) 		1
(1.00) 		0.359
(0.687) 		0.0183
(0.135) 		0.38
(0.71) 		0.259
(0.583)
KIAA1919 9 (2%) 480 0.00165
(0.0337) 		0.181
(0.482) 		0.513
(0.835) 		0.297
(0.626) 		0.0577
(0.262) 		0.0112
(0.103) 		0.758
(1.00) 		0.248
(0.573)
ZNF594 16 (3%) 473 0.0324
(0.184) 		0.554
(0.87) 		0.103
(0.356) 		0.19
(0.492) 		0.0353
(0.195) 		0.611
(0.911) 		0.446
(0.773) 		0.388
(0.715) 		0.439
(0.766) 		0.181
(0.481) 		0.355
(0.683) 		0.885
(1.00)
GPR160 5 (1%) 484 0.0659
(0.276) 		0.183
(0.484) 		0.0433
(0.22) 		0.546
(0.865) 		0.504
(0.831) 		0.683
(0.963) 		0.146
(0.427) 		0.822
(1.00) 		0.0163
(0.127)
UGT2A1 10 (2%) 479 0.12
(0.386) 		0.0894
(0.325) 		0.00088
(0.0225) 		0.78
(1.00) 		0.388
(0.715) 		0.886
(1.00) 		0.116
(0.379) 		0.145
(0.425) 		0.369
(0.699) 		0.0063
(0.0728)
SSRP1 15 (3%) 474 0.122
(0.388) 		0.186
(0.486) 		0.0167
(0.128) 		0.813
(1.00) 		0.115
(0.376) 		0.104
(0.357) 		0.288
(0.617) 		0.00018
(0.00778) 		0.0723
(0.29) 		0.182
(0.483) 		0.0972
(0.342) 		0.87
(1.00)
CNOT3 8 (2%) 481 0.593
(0.897) 		1
(1.00) 		0.0304
(0.179) 		0.19
(0.492) 		0.769
(1.00) 		0.0402
(0.211) 		0.636
(0.927) 		0.0676
(0.28)
TYW3 7 (1%) 482 0.454
(0.78) 		0.032
(0.183) 		0.0778
(0.3) 		0.335
(0.663) 		0.0174
(0.132) 		0.0606
(0.268) 		0.14
(0.416) 		0.642
(0.929) 		0.344
(0.671) 		0.757
(1.00)
GPBP1 13 (3%) 476 0.123
(0.39) 		0.0467
(0.23) 		0.677
(0.958) 		0.727
(0.995) 		0.00626
(0.0726) 		0.0731
(0.291) 		0.691
(0.968) 		0.0854
(0.316) 		0.665
(0.95) 		0.189
(0.49)
STK33 16 (3%) 473 0.121
(0.387) 		0.256
(0.578) 		0.0427
(0.218) 		0.522
(0.843) 		0.287
(0.616) 		0.281
(0.609) 		0.282
(0.61) 		0.00954
(0.0925) 		0.0734
(0.291) 		0.138
(0.414) 		0.166
(0.46) 		0.692
(0.969)
CNOT10 10 (2%) 479 0.0174
(0.132) 		0.141
(0.417) 		0.0322
(0.183) 		0.364
(0.693) 		0.518
(0.84) 		0.145
(0.425) 		0.778
(1.00) 		0.383
(0.712) 		0.782
(1.00) 		1
(1.00)
LUZP1 16 (3%) 473 0.131
(0.404) 		0.636
(0.927) 		0.00066
(0.0185) 		0.0659
(0.276) 		0.761
(1.00) 		0.209
(0.516) 		0.0875
(0.32) 		0.00276
(0.0464) 		0.73
(0.997) 		0.851
(1.00) 		0.136
(0.411) 		1
(1.00)
TRAF3IP3 13 (3%) 476 0.00702
(0.0772) 		0.0727
(0.291) 		0.0327
(0.185) 		0.711
(0.982) 		0.0826
(0.311) 		0.637
(0.927) 		0.731
(0.998) 		0.242
(0.565) 		0.49
(0.816) 		0.173
(0.47) 		0.136
(0.411) 		0.841
(1.00)
GUCY2F 23 (5%) 466 0.0265
(0.165) 		0.307
(0.636) 		0.15
(0.434) 		0.21
(0.519) 		0.9
(1.00) 		0.628
(0.925) 		0.92
(1.00) 		0.0316
(0.182) 		0.324
(0.653) 		0.0524
(0.247) 		0.382
(0.711) 		0.305
(0.635)
DUSP7 8 (2%) 481 1
(1.00) 		0.382
(0.711) 		0.443
(0.77) 		1
(1.00) 		0.036
(0.197) 		0.0174
(0.132) 		0.954
(1.00) 		0.637
(0.927)
TNKS2 22 (4%) 467 0.00382
(0.056) 		0.121
(0.387) 		0.0315
(0.182) 		0.172
(0.469) 		0.171
(0.468) 		0.368
(0.697) 		0.891
(1.00) 		0.0766
(0.298) 		0.953
(1.00) 		0.252
(0.577) 		0.46
(0.787) 		0.129
(0.4)
XPO4 20 (4%) 469 0.0754
(0.295) 		1
(1.00) 		0.00125
(0.0287) 		0.0707
(0.287) 		0.689
(0.967) 		0.158
(0.449) 		0.0998
(0.348) 		0.0363
(0.198) 		0.24
(0.563) 		0.27
(0.595) 		0.359
(0.688) 		0.603
(0.905)
TRIM36 15 (3%) 474 0.0607
(0.268) 		0.23
(0.55) 		0.918
(1.00) 		0.149
(0.432) 		0.391
(0.716) 		0.366
(0.695) 		0.0269
(0.166) 		0.102
(0.352) 		0.11
(0.367) 		0.0178
(0.133) 		0.18
(0.48) 		0.168
(0.463)
DIAPH3 18 (4%) 471 0.23
(0.55) 		0.464
(0.791) 		0.0275
(0.168) 		0.103
(0.355) 		0.171
(0.468) 		0.558
(0.87) 		0.0212
(0.147) 		0.0697
(0.285) 		0.225
(0.542) 		0.766
(1.00) 		0.758
(1.00) 		0.674
(0.956)
ZHX3 14 (3%) 475 0.111
(0.37) 		0.0719
(0.289) 		0.00616
(0.0718) 		0.715
(0.985) 		1
(1.00) 		0.43
(0.758) 		0.507
(0.832) 		0.155
(0.442) 		0.293
(0.621) 		0.0122
(0.109) 		0.136
(0.412) 		1
(1.00)
YIPF1 6 (1%) 483 0.0666
(0.277) 		0.187
(0.487) 		0.0221
(0.151) 		1
(1.00) 		1
(1.00) 		0.0905
(0.328) 		0.726
(0.993) 		0.0432
(0.22) 		0.639
(0.927) 		0.59
(0.895)
TSPAN7 9 (2%) 480 0.234
(0.555) 		0.205
(0.511) 		0.164
(0.458) 		0.547
(0.865) 		0.235
(0.556) 		0.00358
(0.0545) 		0.473
(0.801) 		0.0477
(0.233) 		0.874
(1.00) 		0.562
(0.872)
UBE3C 19 (4%) 470 0.041
(0.214) 		0.307
(0.636) 		0.202
(0.508) 		0.397
(0.722) 		0.348
(0.676) 		0.852
(1.00) 		0.94
(1.00) 		0.226
(0.542) 		0.576
(0.882) 		0.00853
(0.0861) 		0.761
(1.00) 		1
(1.00)
GOLIM4 11 (2%) 478 0.00415
(0.0588) 		0.123
(0.389) 		0.0291
(0.174) 		0.74
(1.00) 		0.658
(0.945) 		1
(1.00) 		0.43
(0.758) 		0.131
(0.404) 		0.399
(0.725) 		0.0599
(0.268)
MTMR1 13 (3%) 476 0.258
(0.581) 		0.0467
(0.23) 		0.0292
(0.175) 		0.496
(0.822) 		0.349
(0.677) 		0.691
(0.968) 		0.406
(0.732) 		0.197
(0.5) 		0.598
(0.901) 		0.436
(0.763)
C17ORF71 11 (2%) 478 0.00584
(0.0692) 		0.241
(0.565) 		0.628
(0.925) 		1
(1.00) 		1
(1.00) 		0.84
(1.00) 		0.079
(0.302) 		0.0753
(0.295) 		0.702
(0.974) 		0.0132
(0.113) 		0.704
(0.976) 		0.56
(0.871)
MORC1 18 (4%) 471 0.282
(0.61) 		0.901
(1.00) 		0.23
(0.55) 		0.16
(0.452) 		0.0419
(0.216) 		0.0907
(0.328) 		0.813
(1.00) 		0.779
(1.00) 		0.136
(0.411) 		0.546
(0.865) 		0.0243
(0.158) 		0.321
(0.65)
IFNA1 7 (1%) 482 0.231
(0.551) 		0.879
(1.00) 		0.445
(0.771) 		0.0412
(0.214) 		0.222
(0.536) 		0.0253
(0.161) 		0.181
(0.481) 		0.375
(0.705)
IL3 6 (1%) 483 0.274
(0.6) 		0.184
(0.485) 		0.906
(1.00) 		0.201
(0.506) 		0.0105
(0.0982) 		0.505
(0.831) 		0.76
(1.00) 		0.707
(0.978) 		1
(1.00) 		0.032
(0.183)
DCLRE1A 13 (3%) 476 0.0975
(0.343) 		0.0573
(0.261) 		0.0239
(0.157) 		0.865
(1.00) 		0.847
(1.00) 		0.131
(0.404) 		0.823
(1.00) 		0.24
(0.563) 		0.404
(0.73) 		0.00466
(0.0619) 		0.254
(0.577) 		0.694
(0.969)
ORC4L 7 (1%) 482 0.00797
(0.0836) 		0.253
(0.577) 		0.00578
(0.0689) 		0.391
(0.716) 		0.875
(1.00) 		0.58
(0.885) 		0.262
(0.586) 		0.0949
(0.338) 		0.261
(0.584) 		0.155
(0.443)
GPRIN3 10 (2%) 479 0.073
(0.291) 		0.039
(0.208) 		0.491
(0.818) 		0.523
(0.844) 		0.00484
(0.0629) 		0.811
(1.00) 		0.225
(0.541) 		0.0712
(0.288) 		0.782
(1.00) 		0.801
(1.00)
ACCN5 14 (3%) 475 0.00354
(0.0542) 		1
(1.00) 		0.267
(0.593) 		0.763
(1.00) 		0.116
(0.379) 		0.327
(0.656) 		0.945
(1.00) 		0.0275
(0.168) 		0.248
(0.574) 		0.751
(1.00) 		0.784
(1.00) 		1
(1.00)
CCDC14 11 (2%) 478 0.122
(0.387) 		0.0137
(0.115) 		0.00508
(0.0642) 		0.0784
(0.301) 		0.136
(0.412) 		0.605
(0.906) 		0.466
(0.792) 		0.0576
(0.262) 		0.475
(0.804) 		0.763
(1.00) 		0.135
(0.411) 		0.563
(0.873)
LDLR 12 (2%) 477 0.00405
(0.058) 		0.00637
(0.0733) 		0.0513
(0.244) 		0.503
(0.83) 		0.92
(1.00) 		0.133
(0.408) 		0.839
(1.00) 		0.112
(0.372) 		0.635
(0.927) 		0.131
(0.404)
OR4N2 10 (2%) 479 0.152
(0.436) 		0.397
(0.723) 		0.817
(1.00) 		0.419
(0.747) 		0.0304
(0.179) 		0.0487
(0.236) 		0.333
(0.66) 		0.0535
(0.251)
SDAD1 8 (2%) 481 0.0624
(0.271) 		0.0699
(0.285) 		0.616
(0.915) 		0.775
(1.00) 		0.101
(0.352) 		0.0239
(0.157) 		0.0415
(0.215) 		0.499
(0.825) 		0.872
(1.00) 		0.842
(1.00)
PLCG1 19 (4%) 470 0.154
(0.44) 		0.184
(0.484) 		0.243
(0.568) 		0.945
(1.00) 		0.0725
(0.29) 		0.641
(0.928) 		0.2
(0.505) 		0.00258
(0.0444) 		0.176
(0.476) 		0.00825
(0.0846) 		0.933
(1.00) 		0.692
(0.968)
NDUFV2 3 (1%) 486 0.0361
(0.197) 		1
(1.00) 		0.318
(0.647) 		0.031
(0.181) 		0.643
(0.93) 		0.365
(0.694)
SYT2 9 (2%) 480 0.0077
(0.082) 		1
(1.00) 		0.462
(0.788) 		0.0658
(0.276) 		0.276
(0.603) 		0.512
(0.834) 		0.319
(0.647) 		0.171
(0.467) 		0.144
(0.423) 		0.0121
(0.108)
C16ORF71 7 (1%) 482 0.0327
(0.185) 		0.0609
(0.268) 		0.0103
(0.0972) 		0.545
(0.864) 		0.719
(0.988) 		0.912
(1.00) 		0.829
(1.00) 		0.527
(0.847) 		0.81
(1.00)
DCAF8L1 18 (4%) 471 0.00136
(0.03) 		0.305
(0.635) 		0.0172
(0.131) 		0.737
(1.00) 		0.63
(0.925) 		0.575
(0.882) 		0.621
(0.92) 		0.141
(0.418) 		0.85
(1.00) 		0.511
(0.833) 		0.136
(0.412) 		1
(1.00)
NONO 12 (2%) 477 0.451
(0.777) 		0.309
(0.637) 		0.32
(0.649) 		0.84
(1.00) 		0.0204
(0.144) 		0.0342
(0.19) 		0.391
(0.716) 		0.303
(0.633) 		0.596
(0.9) 		0.671
(0.954)
DYRK4 14 (3%) 475 0.403
(0.728) 		0.178
(0.478) 		0.0477
(0.233) 		0.258
(0.58) 		0.243
(0.567) 		1
(1.00) 		0.213
(0.522) 		0.0135
(0.115) 		0.0629
(0.272) 		0.566
(0.874) 		0.483
(0.81) 		1
(1.00)
ZMIZ1 11 (2%) 478 0.121
(0.387) 		0.182
(0.483) 		0.0682
(0.281) 		0.819
(1.00) 		0.192
(0.495) 		0.165
(0.459) 		0.271
(0.596) 		0.0127
(0.111) 		0.525
(0.846) 		0.0288
(0.173)
DCLRE1C 12 (2%) 477 0.0146
(0.12) 		0.583
(0.888) 		0.732
(0.999) 		0.0645
(0.275) 		0.355
(0.683) 		0.0332
(0.186) 		0.952
(1.00) 		0.131
(0.404)
GORASP1 11 (2%) 478 0.0655
(0.276) 		0.185
(0.485) 		0.032
(0.183) 		0.605
(0.906) 		0.117
(0.381) 		0.442
(0.769) 		0.343
(0.67) 		0.0103
(0.097) 		0.88
(1.00) 		0.641
(0.928) 		0.137
(0.412) 		1
(1.00)
MIPEP 9 (2%) 480 0.0078
(0.0825) 		0.185
(0.485) 		0.0122
(0.109) 		0.384
(0.712) 		1
(1.00) 		0.495
(0.822) 		0.376
(0.706) 		0.108
(0.363) 		0.284
(0.612) 		0.283
(0.611)
FAM160B1 9 (2%) 480 0.0645
(0.275) 		0.788
(1.00) 		0.00172
(0.0343) 		0.131
(0.404) 		0.547
(0.865) 		0.0136
(0.115) 		0.167
(0.462) 		0.281
(0.609) 		0.293
(0.622) 		0.258
(0.581)
ADAM17 13 (3%) 476 0.0387
(0.207) 		0.594
(0.898) 		0.0008
(0.021) 		0.327
(0.656) 		0.659
(0.945) 		0.763
(1.00) 		0.119
(0.384) 		0.364
(0.693) 		0.722
(0.99) 		0.296
(0.626) 		0.0609
(0.268) 		0.446
(0.773)
PTPN1 10 (2%) 479 0.0223
(0.152) 		0.639
(0.927) 		0.0118
(0.107) 		0.524
(0.845) 		0.909
(1.00) 		1
(1.00) 		0.557
(0.87) 		0.823
(1.00) 		0.0606
(0.268) 		0.167
(0.461) 		0.255
(0.578) 		0.565
(0.873)
ADAMTS16 33 (7%) 456 0.144
(0.422) 		0.355
(0.684) 		0.0309
(0.18) 		0.795
(1.00) 		0.414
(0.742) 		0.314
(0.642) 		0.605
(0.906) 		0.425
(0.752) 		0.116
(0.378) 		0.334
(0.662) 		0.0186
(0.136) 		0.0643
(0.275)
MMP19 12 (2%) 477 0.113
(0.373) 		0.0148
(0.121) 		0.0687
(0.282) 		0.632
(0.927) 		0.66
(0.946) 		0.147
(0.428) 		0.747
(1.00) 		0.222
(0.536) 		0.129
(0.399) 		0.0243
(0.158) 		0.136
(0.411) 		0.694
(0.969)
ATG10 5 (1%) 484 0.043
(0.219) 		0.514
(0.835) 		0.374
(0.704) 		0.504
(0.83) 		0.459
(0.786) 		0.0207
(0.145) 		0.585
(0.89) 		0.199
(0.503)
ANKRD6 13 (3%) 476 0.102
(0.353) 		0.738
(1.00) 		0.0265
(0.165) 		0.143
(0.422) 		0.697
(0.97) 		0.142
(0.419) 		0.0838
(0.314) 		0.0319
(0.183) 		0.747
(1.00) 		0.814
(1.00)
MRPL47 6 (1%) 483 0.017
(0.129) 		0.556
(0.87) 		0.00259
(0.0445) 		1
(1.00) 		0.848
(1.00) 		1
(1.00) 		0.669
(0.954) 		0.142
(0.419) 		0.686
(0.965) 		0.573
(0.88)
RAG1 17 (3%) 472 0.151
(0.436) 		0.517
(0.839) 		0.00026
(0.00988) 		0.495
(0.821) 		0.14
(0.417) 		0.54
(0.861) 		0.237
(0.56) 		0.0397
(0.209) 		0.163
(0.457) 		0.467
(0.794) 		0.137
(0.413) 		1
(1.00)
SPANXN3 9 (2%) 480 0.386
(0.713) 		0.741
(1.00) 		1
(1.00) 		0.824
(1.00) 		0.208
(0.514) 		0.0197
(0.14) 		0.422
(0.75) 		0.8
(1.00) 		0.624
(0.922) 		0.0378
(0.203)
CYP27B1 8 (2%) 481 0.118
(0.383) 		0.0139
(0.116) 		0.0243
(0.158) 		0.385
(0.712) 		0.264
(0.589) 		0.886
(1.00) 		0.289
(0.617) 		0.102
(0.354) 		0.903
(1.00) 		0.728
(0.996)
EHBP1L1 8 (2%) 481 0.331
(0.658) 		0.291
(0.619) 		0.447
(0.773) 		0.413
(0.74) 		0.0199
(0.142) 		0.00654
(0.0741) 		0.635
(0.927) 		0.624
(0.922) 		0.871
(1.00) 		0.693
(0.969)
ZNF846 10 (2%) 479 0.0227
(0.153) 		1
(1.00) 		0.00071
(0.0196) 		0.0758
(0.296) 		1
(1.00) 		0.119
(0.383) 		0.187
(0.488) 		0.566
(0.874) 		0.23
(0.55) 		0.484
(0.811)
SORBS1 12 (2%) 477 0.071
(0.288) 		0.125
(0.393) 		0.00297
(0.0488) 		0.629
(0.925) 		0.246
(0.571) 		0.132
(0.406) 		0.106
(0.359) 		0.11
(0.369) 		0.0799
(0.304) 		0.00938
(0.0912)
GLT25D1 9 (2%) 480 0.0227
(0.153) 		0.288
(0.617) 		0.0825
(0.311) 		0.465
(0.791) 		0.234
(0.554) 		0.0266
(0.165) 		0.472
(0.8) 		0.096
(0.339)
SETD7 9 (2%) 480 0.0627
(0.272) 		0.348
(0.676) 		0.0121
(0.108) 		0.14
(0.416) 		0.373
(0.702) 		0.599
(0.902) 		0.113
(0.373) 		0.00137
(0.0302) 		0.693
(0.969) 		0.444
(0.771)
C9ORF102 10 (2%) 479 0.0084
(0.0853) 		0.879
(1.00) 		0.00154
(0.0323) 		0.389
(0.716) 		0.874
(1.00) 		0.579
(0.885) 		0.0986
(0.345) 		0.552
(0.869) 		0.229
(0.549) 		0.159
(0.45)
C6ORF203 5 (1%) 484 0.0432
(0.22) 		0.779
(1.00) 		1
(1.00) 		0.529
(0.849) 		0.127
(0.396) 		0.0618
(0.27) 		0.684
(0.963) 		0.0131
(0.113)
CSNK1E 9 (2%) 480 0.0122
(0.109) 		0.112
(0.372) 		0.696
(0.969) 		0.546
(0.865) 		0.396
(0.721) 		0.0137
(0.115) 		0.125
(0.393) 		0.427
(0.754) 		0.871
(1.00) 		0.561
(0.871)
RNF103 9 (2%) 480 0.00659
(0.0743) 		0.252
(0.577) 		0.00161
(0.0333) 		0.392
(0.717) 		0.141
(0.418) 		0.884
(1.00) 		0.373
(0.704) 		0.71
(0.981) 		0.364
(0.693) 		0.326
(0.655)
IP6K3 9 (2%) 480 0.132
(0.405) 		0.74
(1.00) 		0.0376
(0.203) 		0.0188
(0.137) 		0.508
(0.832) 		0.664
(0.95) 		0.288
(0.616) 		0.61
(0.911) 		0.338
(0.666) 		0.471
(0.799)
SLC9A2 12 (2%) 477 0.0485
(0.235) 		0.309
(0.637) 		0.213
(0.522) 		0.364
(0.692) 		0.0502
(0.241) 		0.008
(0.0836) 		0.79
(1.00) 		0.503
(0.83) 		0.466
(0.793) 		0.696
(0.969)
C2ORF49 5 (1%) 484 0.0641
(0.275) 		1
(1.00) 		0.0437
(0.222) 		0.684
(0.963) 		0.83
(1.00) 		0.686
(0.964) 		0.0613
(0.269) 		0.93
(1.00) 		0.0145
(0.119)
SLCO6A1 28 (6%) 461 0.0741
(0.292) 		0.04
(0.21) 		0.0942
(0.336) 		0.827
(1.00) 		0.0252
(0.161) 		0.321
(0.65) 		0.978
(1.00) 		0.273
(0.599) 		0.887
(1.00) 		0.104
(0.358) 		0.901
(1.00) 		1
(1.00)
GLRA3 10 (2%) 479 0.00142
(0.0309) 		0.555
(0.87) 		0.0634
(0.273) 		0.63
(0.926) 		0.491
(0.818) 		0.773
(1.00) 		0.596
(0.899) 		0.0235
(0.156) 		0.968
(1.00) 		0.162
(0.455)
FKBP5 7 (1%) 482 0.105
(0.358) 		1
(1.00) 		0.239
(0.561) 		0.579
(0.885) 		0.609
(0.909) 		0.046
(0.228) 		0.478
(0.806) 		0.028
(0.17)
C6ORF15 6 (1%) 483 0.0228
(0.153) 		0.555
(0.87) 		0.14
(0.416) 		0.72
(0.988) 		0.242
(0.565) 		0.0295
(0.176) 		0.887
(1.00) 		0.162
(0.455)
ELANE 7 (1%) 482 0.105
(0.359) 		0.292
(0.62) 		0.507
(0.832) 		0.579
(0.885) 		0.0326
(0.184) 		0.0242
(0.158) 		0.384
(0.712) 		0.0834
(0.313)
QSER1 17 (3%) 472 0.032
(0.183) 		0.553
(0.87) 		0.0119
(0.107) 		0.0925
(0.332) 		0.107
(0.362) 		0.559
(0.87) 		0.367
(0.696) 		0.0671
(0.279) 		0.725
(0.992) 		0.492
(0.819) 		0.782
(1.00) 		1
(1.00)
NUP107 13 (3%) 476 0.0773
(0.3) 		0.34
(0.667) 		0.0151
(0.122) 		1
(1.00) 		1
(1.00) 		0.405
(0.73) 		0.169
(0.464) 		0.286
(0.615) 		0.091
(0.329) 		0.0299
(0.177)
CAPS2 12 (2%) 477 0.133
(0.408) 		0.936
(1.00) 		0.288
(0.617) 		1
(1.00) 		0.0215
(0.149) 		9e-05
(0.00485) 		0.167
(0.461) 		0.785
(1.00)
IPO11 15 (3%) 474 0.0269
(0.166) 		0.00654
(0.0741) 		0.0878
(0.321) 		0.862
(1.00) 		0.391
(0.716) 		0.508
(0.832) 		0.966
(1.00) 		0.112
(0.372) 		0.37
(0.7) 		0.617
(0.916) 		1
(1.00) 		0.072
(0.289)
B3GALNT2 3 (1%) 486 0.278
(0.605) 		0.515
(0.836) 		0.0561
(0.258) 		0.3
(0.629) 		0.048
(0.234) 		0.0306
(0.18) 		0.0653
(0.276) 		0.428
(0.755)
GADD45GIP1 4 (1%) 485 0.535
(0.855) 		0.558
(0.87) 		0.0154
(0.123) 		0.00268
(0.0455) 		0.346
(0.673) 		0.385
(0.713) 		0.783
(1.00) 		0.312
(0.639)
SYNJ1 19 (4%) 470 0.00265
(0.0453) 		0.313
(0.64) 		9e-05
(0.00485) 		0.741
(1.00) 		0.167
(0.461) 		0.88
(1.00) 		0.375
(0.704) 		0.0796
(0.304) 		0.716
(0.986) 		0.0726
(0.29) 		0.0878
(0.321) 		0.757
(1.00)
SMEK1 9 (2%) 480 0.164
(0.457) 		0.179
(0.479) 		0.0778
(0.3) 		0.667
(0.951) 		0.00653
(0.0741) 		0.015
(0.122) 		0.804
(1.00) 		0.9
(1.00) 		0.269
(0.594) 		0.543
(0.862)
SEC14L1 11 (2%) 478 0.0637
(0.274) 		0.183
(0.484) 		0.0584
(0.264) 		0.638
(0.927) 		0.0931
(0.334) 		0.275
(0.601) 		0.508
(0.832) 		0.00361
(0.0547) 		0.636
(0.927) 		0.0168
(0.129)
SLC22A4 5 (1%) 484 0.0432
(0.22) 		0.389
(0.716) 		0.374
(0.704) 		0.505
(0.831) 		0.19
(0.492) 		0.00141
(0.0307) 		0.506
(0.832) 		0.198
(0.501)
OR4D10 16 (3%) 473 0.0083
(0.0848) 		0.184
(0.485) 		0.493
(0.819) 		0.262
(0.586) 		0.112
(0.372) 		0.941
(1.00) 		0.134
(0.409) 		0.0663
(0.277) 		0.333
(0.661) 		0.255
(0.577) 		0.667
(0.952) 		0.634
(0.927)
MAPK6 19 (4%) 470 0.119
(0.385) 		0.183
(0.484) 		0.0723
(0.29) 		0.271
(0.596) 		0.113
(0.372) 		0.572
(0.878) 		0.51
(0.832) 		0.00824
(0.0845) 		0.166
(0.461) 		0.0647
(0.275) 		0.728
(0.995) 		0.787
(1.00)
GRB2 11 (2%) 478 0.0647
(0.275) 		0.185
(0.485) 		0.263
(0.587) 		0.395
(0.72) 		0.384
(0.712) 		0.822
(1.00) 		0.57
(0.877) 		0.012
(0.108) 		0.17
(0.466) 		0.18
(0.479) 		0.255
(0.578) 		1
(1.00)
RBPJ 18 (4%) 471 0.224
(0.539) 		0.637
(0.927) 		0.019
(0.138) 		0.658
(0.945) 		0.625
(0.923) 		1
(1.00) 		0.625
(0.923) 		0.0701
(0.285) 		0.262
(0.586) 		0.122
(0.388) 		0.466
(0.793) 		0.492
(0.819)
RBBP7 17 (3%) 472 0.0001
(0.00522) 		0.0709
(0.287) 		0.0565
(0.259) 		0.148
(0.429) 		0.174
(0.474) 		0.941
(1.00) 		0.696
(0.969) 		0.114
(0.375) 		0.111
(0.369) 		0.848
(1.00) 		0.137
(0.413) 		0.842
(1.00)
C14ORF184 7 (1%) 482 0.135
(0.411) 		1
(1.00) 		0.326
(0.655) 		0.763
(1.00) 		0.0576
(0.262) 		0.0613
(0.269) 		0.00059
(0.0174) 		0.362
(0.691)
GMNN 5 (1%) 484 0.424
(0.752) 		0.558
(0.87) 		0.374
(0.704) 		0.719
(0.988) 		0.349
(0.677) 		0.0393
(0.209) 		0.21
(0.518) 		0.167
(0.462)
KIAA1586 13 (3%) 476 0.0272
(0.167) 		0.64
(0.928) 		0.052
(0.246) 		0.667
(0.951) 		1
(1.00) 		0.195
(0.498) 		0.177
(0.477) 		0.31
(0.637) 		0.2
(0.504) 		0.289
(0.617) 		0.357
(0.686) 		0.766
(1.00)
EXD2 13 (3%) 476 0.029
(0.174) 		0.195
(0.498) 		0.162
(0.455) 		0.16
(0.453) 		0.112
(0.371) 		0.0558
(0.257) 		0.0709
(0.287) 		0.288
(0.617) 		0.931
(1.00) 		0.382
(0.711)
PRKAA2 16 (3%) 473 0.837
(1.00) 		0.793
(1.00) 		0.00605
(0.0708) 		0.434
(0.762) 		0.186
(0.487) 		0.527
(0.847) 		0.0613
(0.269) 		0.419
(0.747) 		0.779
(1.00) 		0.275
(0.601) 		0.357
(0.686) 		0.868
(1.00)
MLLT6 17 (3%) 472 0.232
(0.552) 		0.252
(0.577) 		0.168
(0.462) 		0.7
(0.972) 		0.209
(0.516) 		0.555
(0.87) 		0.175
(0.474) 		0.0009
(0.0228) 		0.0653
(0.276) 		0.09
(0.326) 		0.491
(0.818) 		0.266
(0.591)
SCAI 15 (3%) 474 0.119
(0.385) 		1
(1.00) 		0.0287
(0.172) 		0.149
(0.432) 		0.14
(0.416) 		0.365
(0.694) 		0.726
(0.993) 		0.0574
(0.261) 		0.633
(0.927) 		0.17
(0.467)
KLK10 8 (2%) 481 0.176
(0.475) 		0.712
(0.983) 		0.0781
(0.301) 		0.337
(0.665) 		0.145
(0.424) 		0.0152
(0.123) 		0.22
(0.534) 		0.388
(0.715) 		0.0844
(0.314) 		1
(1.00)
HAUS6 17 (3%) 472 0.027
(0.166) 		0.253
(0.577) 		0.0621
(0.271) 		0.936
(1.00) 		0.508
(0.832) 		0.81
(1.00) 		0.984
(1.00) 		0.756
(1.00) 		0.227
(0.545) 		0.726
(0.993) 		0.864
(1.00) 		0.82
(1.00)
ZNF789 7 (1%) 482 0.324
(0.654) 		0.53
(0.85) 		0.00514
(0.0646) 		0.582
(0.887) 		0.761
(1.00) 		0.157
(0.447) 		0.941
(1.00) 		0.781
(1.00)
DDX43 14 (3%) 475 0.273
(0.599) 		0.463
(0.789) 		0.359
(0.687) 		0.339
(0.666) 		0.0549
(0.255) 		0.869
(1.00) 		0.216
(0.527) 		0.133
(0.407) 		0.872
(1.00) 		0.503
(0.83) 		0.0271
(0.167) 		0.545
(0.864)
EHBP1 25 (5%) 464 0.106
(0.36) 		0.336
(0.664) 		0.38
(0.709) 		0.202
(0.508) 		0.959
(1.00) 		0.556
(0.87) 		0.437
(0.764) 		0.0127
(0.111) 		0.0774
(0.3) 		0.126
(0.395) 		0.391
(0.716) 		1
(1.00)
IVL 20 (4%) 469 1
(1.00) 		1
(1.00) 		0.139
(0.415) 		0.4
(0.725) 		0.838
(1.00) 		0.507
(0.832) 		0.0192
(0.139) 		0.0891
(0.324) 		0.13
(0.401) 		0.75
(1.00) 		0.628
(0.925) 		0.0764
(0.297)
IDH2 18 (4%) 471 0.106
(0.359) 		0.0033
(0.0516) 		0.4
(0.725) 		0.723
(0.991) 		0.645
(0.931) 		0.937
(1.00) 		0.535
(0.855) 		0.0882
(0.322) 		0.0651
(0.276) 		0.124
(0.392)
KLC4 17 (3%) 472 0.135
(0.411) 		0.0719
(0.289) 		0.102
(0.353) 		0.723
(0.991) 		1
(1.00) 		0.231
(0.551) 		0.717
(0.987) 		0.549
(0.866) 		0.305
(0.635) 		0.0264
(0.164) 		0.873
(1.00) 		0.838
(1.00)
UQCRC2 10 (2%) 479 0.86
(1.00) 		0.0987
(0.345) 		0.616
(0.915) 		0.363
(0.692) 		0.209
(0.516) 		0.744
(1.00) 		0.758
(1.00) 		0.325
(0.655) 		0.63
(0.926) 		0.0103
(0.0968)
SCD5 8 (2%) 481 0.756
(1.00) 		0.877
(1.00) 		0.241
(0.564) 		0.168
(0.462) 		0.559
(0.87) 		0.0229
(0.153) 		0.592
(0.896) 		0.208
(0.514)
ADAM28 20 (4%) 469 0.073
(0.291) 		0.556
(0.87) 		0.246
(0.571) 		0.653
(0.94) 		0.462
(0.788) 		0.852
(1.00) 		0.541
(0.862) 		0.0262
(0.164) 		0.666
(0.951) 		0.26
(0.583) 		0.761
(1.00) 		0.67
(0.954)
PTPN3 16 (3%) 473 0.121
(0.387) 		0.21
(0.519) 		0.121
(0.387) 		0.864
(1.00) 		0.525
(0.846) 		0.209
(0.516) 		0.675
(0.956) 		0.132
(0.405) 		0.0104
(0.0979) 		0.239
(0.563) 		0.06
(0.268) 		0.695
(0.969)
ALDH2 12 (2%) 477 0.206
(0.513) 		0.915
(1.00) 		0.763
(1.00) 		0.404
(0.729) 		0.356
(0.685) 		0.0505
(0.241) 		0.757
(1.00) 		0.0398
(0.21) 		0.783
(1.00) 		0.449
(0.775)
FBXO21 9 (2%) 480 0.258
(0.58) 		0.115
(0.375) 		0.127
(0.396) 		0.389
(0.716) 		0.306
(0.636) 		0.306
(0.635) 		0.224
(0.54) 		0.005
(0.0638) 		0.736
(1.00) 		0.0562
(0.258)
MMP8 13 (3%) 476 0.121
(0.387) 		0.536
(0.855) 		0.146
(0.426) 		0.00431
(0.06) 		0.194
(0.497) 		0.0522
(0.247) 		0.57
(0.876) 		0.574
(0.881) 		0.0827
(0.311) 		1
(1.00)
COLEC10 10 (2%) 479 0.0655
(0.276) 		0.183
(0.484) 		0.469
(0.796) 		0.0819
(0.31) 		0.818
(1.00) 		0.723
(0.992) 		0.323
(0.652) 		0.0386
(0.206) 		0.0906
(0.328) 		0.141
(0.418)
C2ORF77 9 (2%) 480 0.0736
(0.292) 		1
(1.00) 		0.0227
(0.152) 		0.385
(0.712) 		0.192
(0.495) 		0.603
(0.905) 		0.29
(0.618) 		0.342
(0.669) 		0.756
(1.00) 		0.177
(0.477)
DHRS7 10 (2%) 479 0.0569
(0.26) 		0.302
(0.631) 		0.514
(0.835) 		0.329
(0.656) 		0.212
(0.521) 		0.00444
(0.061) 		0.126
(0.394) 		0.113
(0.373)
PANK3 7 (1%) 482 0.0741
(0.292) 		0.556
(0.87) 		0.904
(1.00) 		0.513
(0.835) 		0.434
(0.761) 		0.886
(1.00) 		0.912
(1.00) 		0.33
(0.657) 		0.904
(1.00) 		0.0124
(0.11)
C12ORF5 6 (1%) 483 1
(1.00) 		0.875
(1.00) 		0.0781
(0.301) 		0.337
(0.664) 		0.0618
(0.27) 		0.00984
(0.0944) 		0.15
(0.434) 		0.37
(0.699)
HNF1B 10 (2%) 479 0.74
(1.00) 		0.128
(0.398) 		0.573
(0.88) 		0.822
(1.00) 		0.397
(0.721) 		0.0344
(0.191) 		0.129
(0.399) 		0.548
(0.866) 		0.783
(1.00) 		0.447
(0.773)
DDX5 9 (2%) 480 0.163
(0.457) 		0.636
(0.927) 		0.0311
(0.181) 		0.55
(0.866) 		0.084
(0.314) 		0.154
(0.44) 		0.204
(0.51) 		0.781
(1.00)
PTPDC1 10 (2%) 479 0.482
(0.81) 		1
(1.00) 		0.276
(0.603) 		0.253
(0.577) 		0.831
(1.00) 		1
(1.00) 		0.172
(0.469) 		0.00231
(0.0413) 		0.88
(1.00) 		0.285
(0.613)
TNMD 11 (2%) 478 0.372
(0.702) 		0.0622
(0.271) 		0.0634
(0.273) 		0.125
(0.394) 		0.466
(0.792) 		0.74
(1.00) 		0.0757
(0.296) 		0.00685
(0.076) 		0.639
(0.927) 		0.244
(0.569) 		0.138
(0.414) 		1
(1.00)
JAK3 28 (6%) 461 0.181
(0.482) 		0.0184
(0.136) 		0.233
(0.552) 		0.592
(0.897) 		0.756
(1.00) 		0.952
(1.00) 		0.133
(0.407) 		0.08
(0.305) 		0.061
(0.269) 		0.244
(0.569) 		0.503
(0.83) 		0.672
(0.955)
KDM5B 28 (6%) 461 0.0114
(0.104) 		0.186
(0.486) 		0.072
(0.289) 		0.417
(0.745) 		1
(1.00) 		0.44
(0.767) 		1
(1.00) 		0.203
(0.509) 		0.6
(0.903) 		0.233
(0.553) 		0.142
(0.42) 		0.732
(0.999)
NR4A2 13 (3%) 476 0.112
(0.372) 		0.0154
(0.123) 		0.162
(0.455) 		1
(1.00) 		0.542
(0.862) 		0.428
(0.755) 		0.573
(0.88) 		0.426
(0.753) 		0.871
(1.00) 		0.421
(0.748) 		0.268
(0.594) 		0.267
(0.593)
TUBE1 12 (2%) 477 0.309
(0.637) 		1
(1.00) 		0.00109
(0.0259) 		0.245
(0.57) 		0.512
(0.834) 		0.402
(0.727) 		0.356
(0.685) 		0.211
(0.52) 		0.118
(0.383) 		0.0805
(0.306)
TRIM32 12 (2%) 477 0.181
(0.481) 		0.256
(0.578) 		0.568
(0.875) 		1
(1.00) 		0.347
(0.674) 		0.526
(0.847) 		1
(1.00) 		0.179
(0.479) 		0.741
(1.00) 		0.0319
(0.183) 		0.699
(0.971) 		0.869
(1.00)
WNT16 8 (2%) 481 0.0654
(0.276) 		0.444
(0.771) 		0.875
(1.00) 		0.859
(1.00) 		0.309
(0.637) 		0.00299
(0.049) 		0.276
(0.603) 		0.1
(0.348)
ZNF189 19 (4%) 470 0.371
(0.701) 		0.684
(0.963) 		0.094
(0.336) 		0.733
(0.999) 		0.236
(0.557) 		0.0208
(0.145) 		0.179
(0.479) 		0.559
(0.871)
PRKCH 14 (3%) 475 0.786
(1.00) 		0.622
(0.92) 		0.0928
(0.333) 		0.313
(0.641) 		0.452
(0.778) 		0.568
(0.875) 		0.42
(0.748) 		0.0109
(0.101) 		0.131
(0.405) 		0.364
(0.693) 		0.0667
(0.278) 		1
(1.00)
FNDC7 9 (2%) 480 0.11
(0.369) 		0.605
(0.906) 		0.14
(0.417) 		0.885
(1.00) 		0.162
(0.456) 		0.0233
(0.155) 		0.0832
(0.312) 		0.867
(1.00)
ZNF438 13 (3%) 476 0.0649
(0.276) 		0.183
(0.484) 		0.237
(0.559) 		0.789
(1.00) 		0.199
(0.503) 		0.0496
(0.238) 		0.632
(0.927) 		0.42
(0.748) 		0.772
(1.00) 		0.0524
(0.247)
NRAS 44 (9%) 445 0.0403
(0.211) 		0.136
(0.412) 		0.175
(0.474) 		0.963
(1.00) 		0.614
(0.914) 		0.723
(0.991) 		0.787
(1.00) 		0.487
(0.814) 		0.2
(0.504) 		0.725
(0.992) 		0.96
(1.00) 		0.514
(0.836)
SLC24A2 19 (4%) 470 0.214
(0.524) 		0.126
(0.394) 		0.0179
(0.134) 		0.935
(1.00) 		0.515
(0.836) 		0.897
(1.00) 		0.826
(1.00) 		0.158
(0.449) 		0.3
(0.629) 		0.53
(0.85) 		0.594
(0.898) 		0.544
(0.864)
TXNDC15 7 (1%) 482 0.0649
(0.276) 		0.184
(0.484) 		0.514
(0.836) 		1
(1.00) 		0.239
(0.563) 		0.665
(0.951) 		0.549
(0.866) 		0.0457
(0.228) 		0.885
(1.00) 		0.324
(0.653)
ETAA1 18 (4%) 471 0.00546
(0.0668) 		0.88
(1.00) 		0.0523
(0.247) 		0.535
(0.855) 		0.593
(0.897) 		0.733
(0.999) 		0.175
(0.474) 		0.129
(0.399) 		0.231
(0.55) 		0.0564
(0.258) 		0.0863
(0.317) 		0.314
(0.642)
RNF160 18 (4%) 471 0.221
(0.535) 		0.252
(0.577) 		0.00802
(0.0836) 		0.811
(1.00) 		0.0721
(0.29) 		0.16
(0.452) 		0.904
(1.00) 		0.677
(0.958) 		0.422
(0.75) 		0.612
(0.912) 		0.425
(0.753) 		1
(1.00)
TRIM23 13 (3%) 476 0.0332
(0.186) 		0.559
(0.871) 		0.566
(0.874) 		0.582
(0.887) 		0.19
(0.492) 		0.328
(0.656) 		0.795
(1.00) 		0.251
(0.577) 		0.496
(0.822) 		0.0561
(0.258) 		0.781
(1.00) 		0.692
(0.969)
AGFG1 16 (3%) 473 0.566
(0.874) 		0.291
(0.62) 		0.212
(0.521) 		0.617
(0.916) 		0.444
(0.771) 		0.198
(0.502) 		0.446
(0.773) 		0.0216
(0.149) 		0.414
(0.741) 		0.0825
(0.311) 		0.137
(0.413) 		1
(1.00)
RAB28 7 (1%) 482 0.0613
(0.269) 		0.0655
(0.276) 		0.433
(0.761) 		0.684
(0.963) 		0.122
(0.387) 		0.00111
(0.0263) 		0.115
(0.375) 		0.161
(0.454)
ACP6 6 (1%) 483 0.626
(0.924) 		0.682
(0.962) 		0.829
(1.00) 		0.136
(0.411) 		0.11
(0.369) 		0.0212
(0.147) 		0.248
(0.574) 		0.766
(1.00)
UBC 5 (1%) 484 0.873
(1.00) 		0.164
(0.457) 		0.372
(0.702) 		0.507
(0.832) 		0.0261
(0.164) 		0.0898
(0.326) 		0.0596
(0.267) 		0.266
(0.591)
GABRA6 21 (4%) 468 0.122
(0.387) 		0.739
(1.00) 		0.109
(0.367) 		0.182
(0.483) 		0.494
(0.821) 		0.86
(1.00) 		0.126
(0.394) 		0.0384
(0.205) 		0.134
(0.41) 		0.0903
(0.327)
TOB1 8 (2%) 481 0.333
(0.66) 		0.382
(0.711) 		0.328
(0.656) 		0.579
(0.885) 		0.0372
(0.201) 		0.0535
(0.251) 		0.49
(0.817) 		0.462
(0.788)
KIR2DL3 19 (4%) 470 0.978
(1.00) 		0.489
(0.816) 		0.348
(0.675) 		0.302
(0.632) 		0.242
(0.566) 		0.144
(0.424) 		0.0342
(0.19) 		0.235
(0.556) 		0.207
(0.514) 		0.566
(0.874)
OR2T33 18 (4%) 471 0.0269
(0.166) 		0.739
(1.00) 		0.283
(0.611) 		0.431
(0.758) 		0.644
(0.93) 		0.821
(1.00) 		0.423
(0.751) 		0.654
(0.94) 		0.7
(0.972) 		0.386
(0.713) 		0.555
(0.87) 		0.561
(0.872)
C14ORF159 10 (2%) 479 0.412
(0.739) 		0.74
(1.00) 		0.177
(0.477) 		0.565
(0.873) 		0.239
(0.562) 		0.00015
(0.00691) 		0.58
(0.885) 		0.497
(0.823) 		0.782
(1.00) 		0.694
(0.969)
ACOT9 5 (1%) 484 0.791
(1.00) 		1
(1.00) 		0.454
(0.78) 		0.0414
(0.214) 		1
(1.00) 		0.299
(0.629) 		0.506
(0.832) 		0.193
(0.497)
DMRTB1 6 (1%) 483 0.441
(0.768) 		0.631
(0.926) 		0.105
(0.358) 		0.168
(0.463) 		0.346
(0.674) 		0.0422
(0.217) 		0.885
(1.00) 		0.652
(0.939)
NUP160 11 (2%) 478 0.786
(1.00) 		0.184
(0.485) 		0.0629
(0.272) 		0.892
(1.00) 		0.571
(0.878) 		0.824
(1.00) 		0.506
(0.832) 		0.0295
(0.175) 		0.221
(0.535) 		0.0682
(0.281)
FBLN5 10 (2%) 479 0.859
(1.00) 		1
(1.00) 		0.262
(0.586) 		0.127
(0.396) 		0.131
(0.404) 		0.00626
(0.0726) 		0.0533
(0.25) 		0.0827
(0.311) 		0.871
(1.00) 		0.693
(0.969)
UIMC1 9 (2%) 480 0.637
(0.927) 		0.516
(0.838) 		0.264
(0.59) 		0.366
(0.695) 		0.0939
(0.336) 		0.0428
(0.219) 		0.954
(1.00) 		0.527
(0.847)
PRKD1 29 (6%) 460 0.504
(0.83) 		0.353
(0.681) 		0.0199
(0.142) 		0.144
(0.423) 		0.479
(0.807) 		0.83
(1.00) 		0.652
(0.939) 		0.851
(1.00) 		0.408
(0.734) 		0.925
(1.00) 		0.266
(0.591) 		1
(1.00)
GTF3C3 18 (4%) 471 0.122
(0.388) 		1
(1.00) 		0.083
(0.312) 		0.13
(0.401) 		0.0689
(0.283) 		0.134
(0.409) 		0.153
(0.439) 		0.0347
(0.192) 		0.0792
(0.303) 		0.523
(0.844) 		0.306
(0.635) 		0.685
(0.964)
MYH1 36 (7%) 453 0.0687
(0.282) 		0.83
(1.00) 		0.157
(0.446) 		0.819
(1.00) 		0.363
(0.692) 		0.691
(0.968) 		0.211
(0.519) 		0.0151
(0.122) 		0.203
(0.509) 		0.238
(0.561) 		0.939
(1.00) 		0.392
(0.717)
FKTN 9 (2%) 480 0.0725
(0.29) 		0.554
(0.87) 		0.0182
(0.135) 		0.63
(0.925) 		0.26
(0.583) 		0.67
(0.954) 		0.167
(0.461) 		0.0808
(0.307) 		0.283
(0.611) 		0.195
(0.498)
PAK3 20 (4%) 469 0.221
(0.536) 		0.639
(0.927) 		0.168
(0.462) 		0.105
(0.359) 		0.253
(0.577) 		0.945
(1.00) 		0.0992
(0.346) 		0.0171
(0.13) 		0.212
(0.521) 		0.103
(0.355) 		0.394
(0.719) 		0.635
(0.927)
ABCC4 20 (4%) 469 0.697
(0.97) 		0.659
(0.945) 		0.026
(0.164) 		0.616
(0.915) 		0.35
(0.678) 		0.411
(0.737) 		0.834
(1.00) 		0.313
(0.641) 		0.758
(1.00) 		0.504
(0.831) 		1
(1.00) 		0.87
(1.00)
PLA2G4E 11 (2%) 478 0.167
(0.461) 		0.403
(0.729) 		0.605
(0.906) 		0.84
(1.00) 		0.0523
(0.247) 		0.00069
(0.0192) 		0.0847
(0.315) 		0.269
(0.594)
ART5 10 (2%) 479 0.0636
(0.274) 		0.142
(0.419) 		0.733
(0.999) 		0.642
(0.929) 		0.0557
(0.257) 		0.00778
(0.0825) 		0.701
(0.973) 		0.741
(1.00) 		0.137
(0.413) 		0.447
(0.774)
CDC6 10 (2%) 479 0.626
(0.924) 		0.399
(0.724) 		0.598
(0.901) 		0.512
(0.834) 		0.213
(0.522) 		0.0286
(0.172) 		0.307
(0.636) 		0.163
(0.456) 		0.194
(0.497) 		0.869
(1.00)
LPCAT3 5 (1%) 484 0.384
(0.712) 		0.778
(1.00) 		0.361
(0.69) 		0.671
(0.954) 		0.456
(0.783) 		0.45
(0.776) 		0.306
(0.635) 		0.914
(1.00) 		0.00422
(0.0592) 		1
(1.00)
PSD 17 (3%) 472 0.0622
(0.271) 		0.062
(0.27) 		0.103
(0.355) 		0.367
(0.696) 		0.297
(0.626) 		0.933
(1.00) 		0.558
(0.87) 		0.0163
(0.127) 		0.261
(0.584) 		0.139
(0.415) 		0.305
(0.634) 		0.893
(1.00)
CDC5L 13 (3%) 476 0.00868
(0.0867) 		0.687
(0.965) 		0.795
(1.00) 		1
(1.00) 		0.0718
(0.289) 		0.213
(0.523) 		0.472
(0.8) 		0.344
(0.671) 		0.427
(0.755) 		0.602
(0.904)
SCLY 12 (2%) 477 0.273
(0.599) 		0.184
(0.485) 		0.568
(0.875) 		0.256
(0.578) 		0.542
(0.862) 		1
(1.00) 		0.549
(0.866) 		0.05
(0.24) 		0.39
(0.716) 		0.49
(0.816) 		0.0602
(0.268) 		0.45
(0.776)
SYNCRIP 12 (2%) 477 0.039
(0.208) 		0.68
(0.961) 		0.288
(0.617) 		0.0793
(0.303) 		0.544
(0.864) 		0.334
(0.662) 		0.424
(0.752) 		0.393
(0.718) 		0.211
(0.52) 		0.371
(0.701) 		0.0852
(0.316) 		0.84
(1.00)
KRT14 9 (2%) 480 0.46
(0.787) 		0.819
(1.00) 		0.793
(1.00) 		0.14
(0.416) 		0.161
(0.454) 		0.00163
(0.0335) 		0.534
(0.854) 		0.948
(1.00)
CLVS1 12 (2%) 477 0.0648
(0.275) 		0.183
(0.484) 		0.923
(1.00) 		0.285
(0.614) 		0.845
(1.00) 		0.581
(0.886) 		0.451
(0.776) 		0.152
(0.437) 		0.292
(0.62) 		0.603
(0.905) 		0.483
(0.81) 		0.0175
(0.132)
LASS3 17 (3%) 472 0.00965
(0.0933) 		0.515
(0.836) 		0.166
(0.46) 		0.834
(1.00) 		0.439
(0.766) 		0.0725
(0.29) 		0.497
(0.823) 		0.0669
(0.278) 		0.527
(0.848) 		0.346
(0.674)
MPO 16 (3%) 473 0.0254
(0.162) 		0.64
(0.928) 		0.153
(0.439) 		0.177
(0.477) 		0.289
(0.617) 		0.636
(0.927) 		0.783
(1.00) 		0.203
(0.509) 		0.471
(0.798) 		0.507
(0.832) 		0.169
(0.464) 		0.869
(1.00)
LAMC1 23 (5%) 466 0.0271
(0.167) 		0.309
(0.637) 		0.274
(0.6) 		0.25
(0.576) 		0.34
(0.667) 		0.138
(0.414) 		0.971
(1.00) 		0.148
(0.43) 		0.552
(0.869) 		0.24
(0.563) 		0.698
(0.971) 		0.542
(0.862)
OR4N4 18 (4%) 471 0.00375
(0.0556) 		0.639
(0.927) 		0.246
(0.572) 		1
(1.00) 		0.347
(0.675) 		0.332
(0.659) 		0.677
(0.958) 		0.0504
(0.241) 		0.194
(0.497) 		0.181
(0.481) 		0.623
(0.921) 		0.0999
(0.348)
ABI3BP 23 (5%) 466 0.259
(0.582) 		0.212
(0.521) 		0.201
(0.505) 		0.223
(0.538) 		0.0624
(0.271) 		0.584
(0.888) 		0.718
(0.987) 		0.161
(0.453) 		0.423
(0.75) 		0.565
(0.874) 		0.0166
(0.128) 		1
(1.00)
AK3L1 4 (1%) 485 0.123
(0.39) 		0.555
(0.87) 		0.0179
(0.134) 		0.829
(1.00) 		0.14
(0.416) 		0.126
(0.394) 		0.0795
(0.303) 		0.231
(0.551)
PNP 4 (1%) 485 0.0374
(0.202) 		0.641
(0.928) 		1
(1.00) 		0.773
(1.00) 		0.415
(0.743) 		0.131
(0.404) 		0.742
(1.00) 		0.128
(0.397)
TNPO1 17 (3%) 472 0.0535
(0.251) 		0.124
(0.392) 		0.00452
(0.0612) 		0.312
(0.64) 		0.87
(1.00) 		0.924
(1.00) 		0.798
(1.00) 		0.0604
(0.268) 		0.407
(0.732) 		0.963
(1.00) 		0.097
(0.341) 		0.87
(1.00)
NME7 9 (2%) 480 0.0403
(0.211) 		1
(1.00) 		0.126
(0.395) 		0.207
(0.513) 		1
(1.00) 		0.418
(0.745) 		0.442
(0.77) 		0.524
(0.845) 		0.733
(0.999) 		0.555
(0.87)
SP4 12 (2%) 477 0.0633
(0.273) 		0.254
(0.577) 		0.0735
(0.291) 		0.915
(1.00) 		0.833
(1.00) 		0.403
(0.728) 		0.486
(0.813) 		0.0356
(0.195) 		0.0906
(0.328) 		0.153
(0.439) 		0.872
(1.00) 		1
(1.00)
WWTR1 7 (1%) 482 0.328
(0.656) 		0.195
(0.498) 		0.506
(0.832) 		0.337
(0.665) 		0.224
(0.54) 		0.212
(0.521) 		0.904
(1.00) 		0.692
(0.969) 		0.00432
(0.06) 		1
(1.00)
REXO4 5 (1%) 484 0.0435
(0.221) 		0.11
(0.369) 		0.0815
(0.309) 		0.851
(1.00) 		0.493
(0.82) 		0.116
(0.378) 		0.507
(0.832) 		0.213
(0.522)
RASAL2 16 (3%) 473 0.134
(0.409) 		0.0616
(0.269) 		0.0877
(0.321) 		1
(1.00) 		0.115
(0.377) 		0.0495
(0.238) 		0.659
(0.946) 		0.344
(0.671) 		0.674
(0.955) 		0.416
(0.743)
BACE2 11 (2%) 478 0.0645
(0.275) 		0.252
(0.577) 		0.0692
(0.284) 		1
(1.00) 		0.903
(1.00) 		0.808
(1.00) 		0.327
(0.656) 		0.0252
(0.161) 		0.153
(0.439) 		0.328
(0.656) 		0.359
(0.687) 		0.674
(0.956)
OAS1 9 (2%) 480 0.0183
(0.135) 		0.253
(0.577) 		0.255
(0.578) 		0.449
(0.775) 		0.0783
(0.301) 		0.665
(0.951) 		0.57
(0.877) 		0.327
(0.656) 		1
(1.00) 		0.861
(1.00) 		1
(1.00) 		1
(1.00)
IL18R1 16 (3%) 473 0.0777
(0.3) 		0.376
(0.706) 		0.0595
(0.267) 		0.29
(0.618) 		0.651
(0.938) 		0.285
(0.613) 		0.204
(0.511) 		0.138
(0.413) 		0.0497
(0.239) 		0.319
(0.648)
AIFM1 13 (3%) 476 0.565
(0.873) 		0.863
(1.00) 		0.677
(0.958) 		0.85
(1.00) 		0.292
(0.62) 		0.0439
(0.222) 		0.206
(0.512) 		0.477
(0.805)
TRMT5 8 (2%) 481 0.0398
(0.21) 		1
(1.00) 		0.312
(0.639) 		0.46
(0.787) 		0.769
(1.00) 		0.067
(0.278) 		0.385
(0.713) 		0.309
(0.637)
KCTD16 14 (3%) 475 0.627
(0.925) 		1
(1.00) 		0.557
(0.87) 		0.313
(0.64) 		0.102
(0.352) 		0.482
(0.81) 		0.364
(0.694) 		0.0413
(0.214) 		0.332
(0.659) 		0.395
(0.72) 		0.766
(1.00) 		0.779
(1.00)
MFN1 14 (3%) 475 0.542
(0.862) 		0.495
(0.821) 		0.0825
(0.311) 		0.209
(0.516) 		0.0843
(0.314) 		6e-05
(0.00366) 		0.0527
(0.248) 		0.0747
(0.293) 		0.12
(0.386) 		0.394
(0.719)
NUDCD1 10 (2%) 479 0.121
(0.387) 		0.251
(0.577) 		0.286
(0.615) 		1
(1.00) 		0.0323
(0.184) 		0.188
(0.489) 		0.944
(1.00) 		0.308
(0.637) 		0.78
(1.00) 		0.15
(0.434) 		1
(1.00) 		0.376
(0.706)
ZNF439 5 (1%) 484 0.0443
(0.224) 		0.516
(0.837) 		0.633
(0.927) 		0.342
(0.669) 		1
(1.00) 		0.279
(0.606) 		0.19
(0.492) 		0.748
(1.00)
LRP6 27 (6%) 462 0.06
(0.268) 		0.0879
(0.321) 		0.0201
(0.143) 		0.175
(0.475) 		0.479
(0.808) 		0.775
(1.00) 		0.385
(0.713) 		0.663
(0.949) 		0.269
(0.594) 		0.0528
(0.249) 		0.665
(0.95) 		0.579
(0.885)
EFHC1 13 (3%) 476 0.408
(0.734) 		1
(1.00) 		0.534
(0.854) 		1
(1.00) 		0.629
(0.925) 		0.849
(1.00) 		0.0455
(0.227) 		0.415
(0.743) 		0.876
(1.00) 		0.135
(0.41) 		0.19
(0.492) 		0.0967
(0.341)
CDC7 12 (2%) 477 0.122
(0.387) 		0.184
(0.485) 		0.0192
(0.138) 		0.398
(0.723) 		0.919
(1.00) 		0.529
(0.849) 		0.547
(0.865) 		0.0579
(0.263) 		0.458
(0.785) 		0.178
(0.477) 		0.873
(1.00) 		0.193
(0.497)
LAS1L 11 (2%) 478 0.272
(0.597) 		0.182
(0.483) 		0.413
(0.739) 		0.0794
(0.303) 		0.506
(0.832) 		0.396
(0.721) 		0.332
(0.659) 		0.138
(0.414) 		0.0301
(0.177) 		0.0502
(0.241) 		0.0956
(0.339) 		0.67
(0.954)
HSD17B11 5 (1%) 484 0.875
(1.00) 		0.738
(1.00) 		0.0182
(0.135) 		0.182
(0.483) 		0.0743
(0.293) 		0.173
(0.47) 		0.104
(0.357) 		0.433
(0.76)
WNK1 22 (4%) 467 0.0716
(0.289) 		0.106
(0.359) 		0.0886
(0.323) 		0.211
(0.519) 		0.207
(0.513) 		0.346
(0.674) 		0.251
(0.577) 		0.0419
(0.216) 		0.923
(1.00) 		0.269
(0.594)
FRS3 12 (2%) 477 0.324
(0.654) 		0.301
(0.631) 		0.603
(0.905) 		0.918
(1.00) 		0.336
(0.664) 		0.229
(0.549) 		0.433
(0.76) 		0.942
(1.00) 		1
(1.00) 		0.0258
(0.163)
CEACAM1 5 (1%) 484 0.563
(0.873) 		0.26
(0.583) 		0.828
(1.00) 		0.184
(0.485) 		0.15
(0.434) 		0.225
(0.542) 		0.376
(0.706) 		0.826
(1.00) 		0.505
(0.831) 		0.0191
(0.138)
ZNF564 12 (2%) 477 0.0165
(0.127) 		0.231
(0.55) 		0.225
(0.541) 		0.146
(0.426) 		0.833
(1.00) 		0.822
(1.00) 		0.72
(0.988) 		0.337
(0.665) 		0.785
(1.00) 		0.0903
(0.327)
SLC46A3 9 (2%) 480 0.307
(0.636) 		1
(1.00) 		0.0234
(0.156) 		0.075
(0.294) 		0.435
(0.762) 		0.307
(0.636) 		0.194
(0.497) 		0.176
(0.476) 		0.693
(0.969) 		0.531
(0.851)
CCDC93 12 (2%) 477 0.256
(0.579) 		0.37
(0.7) 		0.482
(0.81) 		0.635
(0.927) 		0.0664
(0.277) 		0.00439
(0.0607) 		0.556
(0.87) 		0.718
(0.987) 		0.951
(1.00) 		0.297
(0.626)
LPIN2 10 (2%) 479 0.312
(0.639) 		0.456
(0.782) 		0.0305
(0.179) 		0.328
(0.656) 		0.176
(0.476) 		0.511
(0.833) 		0.519
(0.84) 		0.448
(0.775) 		0.701
(0.973) 		0.877
(1.00)
TAB3 13 (3%) 476 0.0639
(0.274) 		0.185
(0.485) 		0.107
(0.361) 		0.16
(0.452) 		0.91
(1.00) 		0.909
(1.00) 		0.445
(0.772) 		0.0475
(0.233) 		0.349
(0.677) 		0.183
(0.484) 		0.244
(0.569) 		0.758
(1.00)
SNX2 14 (3%) 475 0.818
(1.00) 		0.846
(1.00) 		0.0308
(0.18) 		0.0951
(0.338) 		0.366
(0.695) 		1
(1.00) 		0.0869
(0.319) 		0.47
(0.797) 		0.871
(1.00) 		0.229
(0.549) 		0.779
(1.00) 		1
(1.00)
SNRNP200 23 (5%) 466 0.28
(0.608) 		0.153
(0.439) 		0.0321
(0.183) 		0.171
(0.468) 		0.116
(0.378) 		0.471
(0.799) 		0.152
(0.436) 		0.266
(0.592) 		0.144
(0.423) 		0.733
(0.999) 		0.346
(0.674) 		0.47
(0.797)
ZMYM4 19 (4%) 470 0.57
(0.877) 		0.532
(0.852) 		0.0154
(0.123) 		0.29
(0.618) 		0.341
(0.668) 		0.258
(0.581) 		0.638
(0.927) 		0.514
(0.835) 		0.904
(1.00) 		0.581
(0.886)
OR7C1 11 (2%) 478 0.173
(0.47) 		0.0229
(0.153) 		0.346
(0.674) 		0.633
(0.927) 		0.104
(0.356) 		0.22
(0.535) 		0.483
(0.81) 		0.28
(0.608) 		0.398
(0.724) 		0.362
(0.692) 		0.872
(1.00) 		0.563
(0.873)
LUM 14 (3%) 475 0.309
(0.637) 		0.834
(1.00) 		0.0903
(0.327) 		0.499
(0.826) 		0.724
(0.992) 		0.338
(0.666) 		0.897
(1.00) 		0.00195
(0.037) 		0.256
(0.578) 		0.307
(0.636) 		0.645
(0.932) 		0.765
(1.00)
DHX35 13 (3%) 476 0.0154
(0.124) 		1
(1.00) 		0.0889
(0.324) 		0.818
(1.00) 		0.606
(0.906) 		0.148
(0.431) 		0.376
(0.706) 		0.295
(0.624) 		0.0595
(0.267) 		0.432
(0.759) 		0.872
(1.00) 		1
(1.00)
SLC25A13 17 (3%) 472 0.183
(0.484) 		0.701
(0.973) 		0.213
(0.522) 		0.466
(0.793) 		0.848
(1.00) 		0.668
(0.953) 		0.303
(0.632) 		0.606
(0.906) 		0.417
(0.745) 		0.0204
(0.144)
ACTL8 9 (2%) 480 0.0169
(0.129) 		0.252
(0.577) 		0.164
(0.459) 		0.877
(1.00) 		0.206
(0.512) 		0.165
(0.459) 		0.365
(0.694) 		0.363
(0.692) 		0.25
(0.576) 		0.0806
(0.306) 		0.706
(0.977) 		0.843
(1.00)
PPP1R12A 16 (3%) 473 0.627
(0.925) 		0.255
(0.577) 		0.409
(0.735) 		0.776
(1.00) 		0.492
(0.818) 		0.731
(0.998) 		0.666
(0.951) 		0.0446
(0.225) 		0.749
(1.00) 		0.542
(0.862) 		0.0915
(0.33) 		0.0829
(0.312)
SLC22A9 10 (2%) 479 0.249
(0.575) 		0.223
(0.538) 		0.165
(0.459) 		0.0683
(0.281) 		0.0231
(0.154) 		0.0644
(0.275) 		0.758
(1.00) 		0.479
(0.808) 		0.491
(0.817) 		1
(1.00)
ZNF384 9 (2%) 480 0.59
(0.895) 		0.113
(0.373) 		0.0722
(0.29) 		0.564
(0.873) 		0.161
(0.454) 		0.00844
(0.0856) 		0.195
(0.498) 		0.0948
(0.337) 		0.871
(1.00) 		1
(1.00)
G2E3 15 (3%) 474 0.405
(0.73) 		0.177
(0.477) 		0.0118
(0.106) 		0.0868
(0.319) 		0.321
(0.65) 		0.715
(0.986) 		0.304
(0.633) 		0.0872
(0.32) 		0.743
(1.00) 		0.0592
(0.266)
PPIG 15 (3%) 474 0.113
(0.373) 		0.0714
(0.288) 		0.0541
(0.252) 		0.765
(1.00) 		0.131
(0.404) 		0.743
(1.00) 		0.301
(0.63) 		0.00717
(0.0781) 		0.664
(0.95) 		0.122
(0.388) 		0.271
(0.596) 		0.486
(0.814)
HNRNPH3 4 (1%) 485 0.535
(0.854) 		0.113
(0.373) 		0.796
(1.00) 		0.59
(0.894) 		0.09
(0.326) 		0.0217
(0.149) 		0.306
(0.635) 		0.282
(0.61)
FAS 9 (2%) 480 0.0124
(0.11) 		0.714
(0.985) 		0.138
(0.414) 		0.308
(0.637) 		0.26
(0.584) 		0.219
(0.532) 		0.736
(1.00) 		0.901
(1.00)
ETF1 12 (2%) 477 0.074
(0.292) 		0.177
(0.477) 		0.224
(0.54) 		0.604
(0.905) 		0.833
(1.00) 		0.822
(1.00) 		0.856
(1.00) 		0.021
(0.146) 		0.232
(0.552) 		0.569
(0.876)
CD244 7 (1%) 482 0.00792
(0.0833) 		0.25
(0.577) 		0.515
(0.836) 		0.204
(0.51) 		1
(1.00) 		0.774
(1.00) 		0.911
(1.00) 		0.0911
(0.329) 		0.29
(0.618) 		0.777
(1.00) 		0.417
(0.745) 		0.693
(0.969)
ADAM18 23 (5%) 466 0.431
(0.759) 		0.431
(0.759) 		0.089
(0.324) 		1
(1.00) 		0.923
(1.00) 		0.773
(1.00) 		0.368
(0.698) 		0.396
(0.721) 		0.894
(1.00) 		0.0148
(0.121)
GSS 9 (2%) 480 0.0653
(0.276) 		0.252
(0.577) 		0.099
(0.346) 		0.328
(0.656) 		0.616
(0.915) 		0.31
(0.637) 		0.67
(0.954) 		0.0367
(0.2) 		0.383
(0.712) 		0.737
(1.00)
OR5H15 7 (1%) 482 0.348
(0.676) 		0.875
(1.00) 		0.616
(0.915) 		0.364
(0.694) 		0.221
(0.535) 		0.00505
(0.064) 		0.866
(1.00) 		0.127
(0.396)
ACTL6B 9 (2%) 480 0.789
(1.00) 		0.094
(0.336) 		0.141
(0.418) 		0.684
(0.963) 		0.365
(0.694) 		0.153
(0.439) 		0.0828
(0.311) 		0.00199
(0.0373)
ZNF167 18 (4%) 471 0.387
(0.714) 		1
(1.00) 		0.00406
(0.058) 		0.112
(0.371) 		0.77
(1.00) 		0.809
(1.00) 		0.214
(0.524) 		0.121
(0.387) 		0.197
(0.499) 		0.99
(1.00) 		0.0961
(0.34) 		0.428
(0.755)
C4ORF49 5 (1%) 484 0.635
(0.927) 		0.631
(0.926) 		0.633
(0.927) 		0.717
(0.987) 		0.171
(0.468) 		0.0237
(0.157) 		0.406
(0.732) 		0.749
(1.00)
KLRC3 6 (1%) 483 0.0541
(0.252) 		0.558
(0.87) 		0.635
(0.927) 		1
(1.00) 		0.24
(0.563) 		0.195
(0.498) 		0.885
(1.00) 		0.0438
(0.222)
GABRP 13 (3%) 476 0.0661
(0.277) 		0.788
(1.00) 		0.567
(0.875) 		0.368
(0.698) 		0.904
(1.00) 		0.725
(0.992) 		0.0136
(0.115) 		0.436
(0.763) 		0.63
(0.926) 		0.33
(0.657) 		0.871
(1.00) 		0.841
(1.00)
CCT5 8 (2%) 481 0.629
(0.925) 		0.463
(0.789) 		0.164
(0.457) 		0.632
(0.927) 		0.508
(0.832) 		0.58
(0.885) 		0.674
(0.955) 		0.0335
(0.187) 		0.491
(0.817) 		0.0705
(0.286)
MRPS18B 5 (1%) 484 0.296
(0.625) 		0.323
(0.653) 		0.25
(0.576) 		0.0411
(0.214) 		0.172
(0.47) 		0.0953
(0.338) 		0.325
(0.655) 		0.564
(0.873)
LEF1 9 (2%) 480 0.165
(0.459) 		0.0878
(0.321) 		0.0181
(0.134) 		0.557
(0.87) 		0.615
(0.914) 		0.547
(0.865) 		0.201
(0.505) 		0.421
(0.749) 		0.692
(0.969) 		0.901
(1.00)
ENSA 6 (1%) 483 0.182
(0.483) 		1
(1.00) 		0.848
(1.00) 		0.271
(0.596) 		0.587
(0.892) 		0.00126
(0.0287) 		0.943
(1.00) 		0.269
(0.594) 		0.0603
(0.268) 		0.695
(0.969)
GPR75 9 (2%) 480 0.0235
(0.156) 		0.204
(0.51) 		0.176
(0.476) 		0.329
(0.656) 		0.0601
(0.268) 		0.117
(0.38) 		0.807
(1.00) 		0.389
(0.716)
MAPK9 12 (2%) 477 0.308
(0.637) 		0.453
(0.779) 		0.222
(0.536) 		0.605
(0.906) 		1
(1.00) 		0.359
(0.687) 		0.736
(1.00) 		0.261
(0.585) 		0.577
(0.883) 		0.757
(1.00) 		0.0129
(0.112) 		0.187
(0.487)
TMEM131 22 (4%) 467 0.166
(0.46) 		0.74
(1.00) 		0.456
(0.782) 		0.542
(0.862) 		0.756
(1.00) 		0.286
(0.614) 		0.165
(0.459) 		0.0243
(0.158) 		0.0556
(0.257) 		0.749
(1.00) 		0.136
(0.411) 		0.696
(0.969)
FUCA2 5 (1%) 484 0.352
(0.679) 		0.165
(0.459) 		0.684
(0.963) 		0.829
(1.00) 		0.137
(0.413) 		0.0123
(0.109) 		0.0861
(0.317) 		0.325
(0.655)
VN1R4 8 (2%) 481 0.513
(0.835) 		0.684
(0.963) 		0.265
(0.591) 		0.549
(0.866) 		0.0222
(0.151) 		0.0966
(0.341) 		0.267
(0.593) 		0.354
(0.683)
TRIB1 9 (2%) 480 0.234
(0.555) 		0.716
(0.986) 		1
(1.00) 		0.853
(1.00) 		0.26
(0.583) 		0.00294
(0.0485) 		0.502
(0.829) 		0.506
(0.832) 		0.596
(0.899) 		1
(1.00)
JMJD6 9 (2%) 480 0.462
(0.788) 		0.635
(0.927) 		0.904
(1.00) 		0.896
(1.00) 		0.236
(0.557) 		0.109
(0.367) 		0.0197
(0.141) 		0.276
(0.603) 		0.873
(1.00) 		0.842
(1.00)
ZC3H6 18 (4%) 471 0.114
(0.374) 		0.878
(1.00) 		0.00092
(0.0231) 		0.617
(0.916) 		0.112
(0.371) 		0.1
(0.348) 		0.137
(0.412) 		0.203
(0.509) 		0.542
(0.862) 		0.356
(0.685) 		0.628
(0.925) 		0.636
(0.927)
TMEM48 11 (2%) 478 0.0635
(0.274) 		1
(1.00) 		0.00203
(0.0377) 		0.497
(0.823) 		0.603
(0.905) 		0.917
(1.00) 		0.212
(0.521) 		0.156
(0.445) 		0.825
(1.00) 		0.363
(0.692)
METTL9 4 (1%) 485 0.537
(0.857) 		0.207
(0.513) 		0.61
(0.91) 		0.3
(0.629) 		0.139
(0.415) 		0.0464
(0.229) 		0.105
(0.358) 		0.0629
(0.272)
MTF1 10 (2%) 479 0.0228
(0.153) 		0.254
(0.577) 		0.064
(0.275) 		0.384
(0.712) 		0.617
(0.915) 		0.549
(0.866) 		0.0994
(0.347) 		0.636
(0.927) 		0.703
(0.975) 		0.35
(0.678)
STYK1 7 (1%) 482 0.719
(0.988) 		0.592
(0.896) 		0.388
(0.715) 		0.289
(0.618) 		0.174
(0.472) 		0.00705
(0.0773) 		0.862
(1.00) 		0.723
(0.991)
NDUFAF1 7 (1%) 482 0.328
(0.656) 		0.5
(0.826) 		0.197
(0.5) 		0.76
(1.00) 		0.044
(0.223) 		0.0576
(0.262) 		0.138
(0.413) 		0.134
(0.409)
ENPP1 15 (3%) 474 0.404
(0.729) 		0.834
(1.00) 		0.288
(0.616) 		0.294
(0.623) 		0.364
(0.693) 		0.556
(0.87) 		0.255
(0.578) 		0.0475
(0.233) 		0.67
(0.954) 		0.822
(1.00) 		0.0611
(0.269) 		1
(1.00)
CASP4 10 (2%) 479 0.624
(0.923) 		0.819
(1.00) 		0.172
(0.469) 		0.821
(1.00) 		0.485
(0.812) 		0.0464
(0.23) 		0.306
(0.636) 		0.68
(0.961)
DIAPH2 25 (5%) 464 0.0963
(0.34) 		0.319
(0.647) 		0.304
(0.634) 		0.133
(0.407) 		0.83
(1.00) 		0.193
(0.497) 		0.469
(0.797) 		0.0387
(0.207) 		0.365
(0.694) 		0.21
(0.518) 		0.92
(1.00) 		0.47
(0.798)
ASPG 7 (1%) 482 0.105
(0.358) 		0.139
(0.415) 		0.138
(0.414) 		0.505
(0.831) 		0.23
(0.55) 		0.0077
(0.082) 		0.48
(0.808) 		0.31
(0.638)
CDK14 17 (3%) 472 1
(1.00) 		0.655
(0.942) 		0.891
(1.00) 		1
(1.00) 		0.297
(0.626) 		0.317
(0.645) 		0.0724
(0.29) 		0.285
(0.613) 		0.279
(0.607) 		0.00885
(0.0877) 		0.0645
(0.275) 		0.219
(0.532)
OR8A1 5 (1%) 484 0.272
(0.597) 		0.527
(0.847) 		0.359
(0.688) 		0.672
(0.955) 		0.0579
(0.263) 		0.00322
(0.051) 		0.104
(0.357) 		0.638
(0.927)
SPINT4 4 (1%) 485 0.536
(0.856) 		1
(1.00) 		0.555
(0.87) 		0.829
(1.00) 		0.161
(0.453) 		0.0412
(0.214) 		0.188
(0.489) 		0.513
(0.835)
STRADB 7 (1%) 482 0.056
(0.258) 		0.254
(0.577) 		0.207
(0.514) 		0.273
(0.599) 		0.761
(1.00) 		0.0307
(0.18) 		0.826
(1.00) 		0.567
(0.875)
HNMT 8 (2%) 481 0.591
(0.895) 		0.29
(0.618) 		0.238
(0.56) 		0.666
(0.951) 		0.0679
(0.281) 		0.0481
(0.234) 		0.488
(0.815) 		0.409
(0.734) 		0.138
(0.413) 		1
(1.00)
CXXC5 6 (1%) 483 0.102
(0.352) 		0.198
(0.501) 		0.635
(0.927) 		0.598
(0.901) 		0.0841
(0.314) 		0.0444
(0.224) 		0.602
(0.905) 		0.696
(0.969)
SPAG1 12 (2%) 477 0.444
(0.771) 		1
(1.00) 		0.286
(0.614) 		0.0281
(0.17) 		1
(1.00) 		0.215
(0.525) 		0.59
(0.894) 		0.889
(1.00) 		0.845
(1.00) 		0.549
(0.866)
SPZ1 11 (2%) 478 0.0735
(0.291) 		0.835
(1.00) 		0.00511
(0.0644) 		0.205
(0.512) 		0.238
(0.561) 		0.578
(0.884) 		0.925
(1.00) 		0.613
(0.913) 		0.641
(0.928) 		0.779
(1.00) 		0.27
(0.595) 		0.545
(0.864)
CSNK2A2 7 (1%) 482 0.549
(0.866) 		0.384
(0.712) 		0.876
(1.00) 		0.666
(0.951) 		0.0574
(0.261) 		0.0355
(0.195) 		0.863
(1.00) 		0.409
(0.735)
CBX3 7 (1%) 482 0.275
(0.602) 		0.185
(0.485) 		0.106
(0.36) 		0.0379
(0.203) 		0.24
(0.564) 		0.581
(0.886) 		0.0509
(0.242) 		0.153
(0.439) 		0.502
(0.829) 		0.156
(0.445)
ZBP1 13 (3%) 476 0.0713
(0.288) 		0.548
(0.866) 		0.0557
(0.257) 		0.325
(0.655) 		0.911
(1.00) 		0.742
(1.00) 		0.0567
(0.259) 		0.265
(0.59) 		0.32
(0.649) 		0.0126
(0.111) 		0.357
(0.687) 		0.67
(0.954)
TRAM1L1 14 (3%) 475 0.0738
(0.292) 		0.0618
(0.27) 		0.36
(0.688) 		0.402
(0.727) 		0.692
(0.969) 		0.878
(1.00) 		0.777
(1.00) 		0.0259
(0.163) 		0.764
(1.00) 		0.207
(0.513) 		1
(1.00) 		0.063
(0.272)
ZNF547 10 (2%) 479 0.249
(0.575) 		1
(1.00) 		0.213
(0.522) 		0.823
(1.00) 		0.533
(0.852) 		0.0274
(0.168) 		0.854
(1.00) 		0.105
(0.358)
ADCY9 20 (4%) 469 1
(1.00) 		0.834
(1.00) 		0.167
(0.461) 		0.712
(0.983) 		0.458
(0.785) 		0.807
(1.00) 		0.214
(0.524) 		0.0394
(0.209) 		0.618
(0.916) 		0.316
(0.644) 		0.0862
(0.317) 		0.82
(1.00)
AGAP4 4 (1%) 485 0.195
(0.497) 		0.0186
(0.136) 		0.139
(0.415) 		0.128
(0.397) 		0.184
(0.485) 		0.312
(0.639)
OR11H12 5 (1%) 484 0.874
(1.00) 		0.557
(0.87) 		0.829
(1.00) 		1
(1.00) 		0.605
(0.906) 		0.4
(0.725) 		0.0318
(0.183) 		0.0521
(0.246)
CHMP4C 4 (1%) 485 0.339
(0.666) 		0.777
(1.00) 		0.794
(1.00) 		0.588
(0.893) 		0.303
(0.633) 		0.0428
(0.219) 		0.304
(0.634) 		0.283
(0.611)
CLGN 13 (3%) 476 0.0076
(0.0813) 		0.29
(0.618) 		0.651
(0.938) 		0.745
(1.00) 		0.332
(0.66) 		0.0555
(0.257) 		0.481
(0.809) 		0.234
(0.554)
EML4 10 (2%) 479 0.018
(0.134) 		0.25
(0.577) 		0.277
(0.604) 		0.893
(1.00) 		0.616
(0.915) 		1
(1.00) 		0.943
(1.00) 		0.753
(1.00) 		1
(1.00) 		0.55
(0.866)
AWAT1 9 (2%) 480 0.0747
(0.293) 		0.178
(0.477) 		0.112
(0.371) 		1
(1.00) 		0.31
(0.637) 		0.638
(0.927) 		0.968
(1.00) 		0.0452
(0.226) 		0.734
(0.999) 		0.77
(1.00)
GSTA5 8 (2%) 481 0.868
(1.00) 		0.52
(0.841) 		0.331
(0.658) 		0.409
(0.736) 		0.593
(0.897) 		0.0351
(0.194) 		0.377
(0.707) 		0.647
(0.933)
NXF3 12 (2%) 477 0.743
(1.00) 		0.133
(0.407) 		0.177
(0.477) 		0.564
(0.873) 		0.103
(0.356) 		0.00011
(0.00558) 		0.547
(0.865) 		0.146
(0.426)
HRSP12 7 (1%) 482 0.0644
(0.275) 		1
(1.00) 		0.0617
(0.27) 		0.555
(0.87) 		0.384
(0.712) 		0.0183
(0.135) 		0.139
(0.415) 		0.154
(0.44) 		0.441
(0.769) 		0.442
(0.769)
CTCF 19 (4%) 470 0.158
(0.449) 		0.377
(0.706) 		0.0717
(0.289) 		0.194
(0.497) 		0.0781
(0.301) 		0.306
(0.636) 		0.194
(0.497) 		0.0247
(0.159) 		0.069
(0.283) 		0.129
(0.4)
GRB14 11 (2%) 478 0.00623
(0.0724) 		0.253
(0.577) 		0.0856
(0.316) 		0.141
(0.418) 		0.731
(0.998) 		0.724
(0.992) 		0.826
(1.00) 		0.0937
(0.335) 		1
(1.00) 		0.634
(0.927)
MAP3K12 14 (3%) 475 0.275
(0.601) 		1
(1.00) 		0.105
(0.358) 		0.125
(0.394) 		0.749
(1.00) 		0.286
(0.614) 		0.3
(0.629) 		0.406
(0.731) 		0.213
(0.522) 		0.162
(0.456) 		0.0025
(0.0435) 		0.189
(0.49)
ACAT2 9 (2%) 480 0.0239
(0.157) 		0.891
(1.00) 		0.794
(1.00) 		0.422
(0.75) 		0.601
(0.904) 		0.0777
(0.3) 		0.0841
(0.314) 		0.377
(0.707) 		0.0593
(0.266) 		0.698
(0.97)
C14ORF50 8 (2%) 481 0.222
(0.536) 		0.0462
(0.229) 		0.206
(0.512) 		0.112
(0.371) 		0.765
(1.00) 		0.167
(0.461) 		0.336
(0.664) 		0.171
(0.468) 		0.367
(0.696) 		0.697
(0.97)
KCNG4 10 (2%) 479 0.601
(0.904) 		0.396
(0.721) 		0.201
(0.506) 		0.0598
(0.267) 		0.545
(0.864) 		0.0206
(0.145) 		0.0693
(0.284) 		0.703
(0.975) 		0.231
(0.55) 		0.921
(1.00)
EPC1 13 (3%) 476 0.328
(0.656) 		0.74
(1.00) 		0.424
(0.752) 		0.246
(0.571) 		0.175
(0.474) 		0.0449
(0.225) 		0.086
(0.317) 		0.0586
(0.264) 		0.393
(0.718) 		0.52
(0.841)
FAM91A1 12 (2%) 477 0.0639
(0.274) 		1
(1.00) 		0.212
(0.521) 		0.436
(0.763) 		0.103
(0.355) 		0.06
(0.268) 		0.182
(0.483) 		0.0326
(0.185) 		0.905
(1.00) 		0.808
(1.00)
OR2Y1 8 (2%) 481 0.332
(0.659) 		0.0513
(0.244) 		0.383
(0.712) 		0.895
(1.00) 		0.258
(0.58) 		0.00474
(0.0622) 		0.826
(1.00) 		0.669
(0.953)
CBLL1 6 (1%) 483 0.149
(0.432) 		0.196
(0.498) 		0.848
(1.00) 		0.85
(1.00) 		0.104
(0.357) 		0.0207
(0.145) 		0.183
(0.484) 		0.159
(0.451)
MERTK 20 (4%) 469 0.221
(0.535) 		0.74
(1.00) 		0.158
(0.447) 		0.174
(0.473) 		0.117
(0.379) 		0.232
(0.552) 		0.177
(0.477) 		0.079
(0.302) 		0.78
(1.00) 		0.0169
(0.129) 		0.0941
(0.336) 		0.852
(1.00)
PRMT8 14 (3%) 475 0.613
(0.913) 		0.639
(0.927) 		0.105
(0.359) 		0.0772
(0.3) 		0.601
(0.904) 		0.84
(1.00) 		0.014
(0.116) 		0.0557
(0.257) 		0.684
(0.963) 		0.0921
(0.331) 		0.593
(0.897) 		0.868
(1.00)
SAPS3 15 (3%) 474 0.0605
(0.268) 		0.388
(0.715) 		0.00029
(0.0107) 		1
(1.00) 		0.073
(0.291) 		0.849
(1.00) 		0.541
(0.861) 		0.185
(0.485) 		0.64
(0.928) 		0.333
(0.661) 		0.356
(0.685) 		0.219
(0.532)
MOV10 14 (3%) 475 0.441
(0.768) 		0.555
(0.87) 		0.419
(0.747) 		0.367
(0.696) 		0.734
(0.999) 		0.92
(1.00) 		0.802
(1.00) 		0.344
(0.671) 		0.0132
(0.113) 		0.0604
(0.268)
UFSP2 5 (1%) 484 0.0428
(0.219) 		0.779
(1.00) 		0.553
(0.87) 		0.327
(0.656) 		0.329
(0.656) 		0.146
(0.426) 		0.741
(1.00) 		0.253
(0.577)
RIMBP3 6 (1%) 483 0.441
(0.768) 		1
(1.00) 		1
(1.00) 		0.504
(0.83) 		0.558
(0.87) 		0.249
(0.575) 		0.244
(0.569) 		0.00952
(0.0923)
KLF12 5 (1%) 484 0.788
(1.00) 		1
(1.00) 		0.0182
(0.135) 		0.672
(0.955) 		0.641
(0.928) 		0.343
(0.67) 		0.508
(0.832) 		0.597
(0.9)
VIM 9 (2%) 480 0.066
(0.276) 		0.349
(0.677) 		0.00473
(0.0622) 		0.195
(0.498) 		0.199
(0.503) 		0.758
(1.00) 		1
(1.00) 		0.11
(0.368) 		0.571
(0.878) 		0.316
(0.644)
GLG1 14 (3%) 475 0.221
(0.535) 		0.0887
(0.323) 		0.24
(0.563) 		0.559
(0.87) 		0.163
(0.457) 		0.248
(0.573) 		0.165
(0.459) 		0.024
(0.157) 		0.541
(0.862) 		0.0746
(0.293) 		0.757
(1.00) 		0.269
(0.594)
MFSD6 8 (2%) 481 0.56
(0.871) 		0.392
(0.717) 		0.0285
(0.172) 		0.139
(0.415) 		0.37
(0.699) 		0.0672
(0.279) 		0.125
(0.393) 		0.422
(0.75) 		0.301
(0.63) 		0.892
(1.00)
USP16 8 (2%) 481 0.0319
(0.183) 		0.555
(0.87) 		0.164
(0.458) 		0.56
(0.871) 		0.543
(0.863) 		0.506
(0.832) 		0.418
(0.747) 		0.467
(0.794) 		0.322
(0.651) 		0.82
(1.00)
OR4C15 16 (3%) 473 0.0642
(0.275) 		1
(1.00) 		0.104
(0.357) 		0.101
(0.351) 		0.752
(1.00) 		0.13
(0.402) 		0.708
(0.979) 		0.0264
(0.164) 		0.945
(1.00) 		0.216
(0.527) 		0.463
(0.789) 		1
(1.00)
TRPA1 32 (7%) 457 0.298
(0.627) 		0.507
(0.832) 		0.413
(0.74) 		0.19
(0.491) 		0.425
(0.752) 		0.968
(1.00) 		0.518
(0.84) 		0.00474
(0.0622) 		0.802
(1.00) 		0.849
(1.00) 		0.136
(0.411) 		0.324
(0.653)
FBXO45 6 (1%) 483 0.628
(0.925) 		0.205
(0.511) 		1
(1.00) 		1
(1.00) 		0.0235
(0.156) 		0.0885
(0.323) 		0.672
(0.955) 		0.571
(0.878)
LEO1 12 (2%) 477 0.00143
(0.0309) 		0.178
(0.478) 		0.0813
(0.308) 		0.495
(0.821) 		0.658
(0.945) 		0.637
(0.927) 		0.0896
(0.326) 		0.068
(0.281) 		0.232
(0.552) 		0.647
(0.934) 		0.873
(1.00) 		1
(1.00)
DNAJB9 6 (1%) 483 0.0219
(0.15) 		0.203
(0.509) 		0.24
(0.563) 		0.664
(0.95) 		0.215
(0.526) 		0.0557
(0.257) 		0.23
(0.55) 		0.0948
(0.337)
RNF219 19 (4%) 470 0.207
(0.514) 		0.64
(0.928) 		0.0943
(0.336) 		0.294
(0.623) 		0.804
(1.00) 		0.351
(0.679) 		0.0582
(0.263) 		0.0135
(0.115) 		0.0588
(0.265) 		0.25
(0.576) 		0.0708
(0.287) 		0.189
(0.49)
PPP2R2B 11 (2%) 478 0.626
(0.924) 		1
(1.00) 		0.212
(0.52) 		0.605
(0.906) 		0.895
(1.00) 		0.887
(1.00) 		0.47
(0.797) 		0.0217
(0.149) 		0.748
(1.00) 		0.495
(0.821) 		0.268
(0.594) 		0.177
(0.477)
NEK1 14 (3%) 475 0.105
(0.358) 		0.657
(0.944) 		0.00607
(0.071) 		0.113
(0.373) 		0.0738
(0.292) 		0.26
(0.584) 		0.471
(0.799) 		0.162
(0.455) 		0.729
(0.996) 		0.123
(0.389) 		0.0597
(0.267) 		0.451
(0.777)
CEACAM6 4 (1%) 485 0.0882
(0.322) 		0.388
(0.715) 		1
(1.00) 		0.297
(0.626) 		0.16
(0.453) 		0.111
(0.37) 		0.0276
(0.168) 		0.54
(0.86)
KRTAP12-3 3 (1%) 486 0.278
(0.605) 		0.113
(0.373) 		0.793
(1.00) 		0.593
(0.897) 		0.0146
(0.12) 		0.0841
(0.314) 		0.643
(0.93) 		0.842
(1.00)
TFAP2C 11 (2%) 478 0.685
(0.963) 		0.481
(0.809) 		0.734
(0.999) 		0.29
(0.619) 		0.443
(0.77) 		0.0159
(0.125) 		0.298
(0.627) 		0.473
(0.801)
C10ORF119 9 (2%) 480 0.234
(0.554) 		0.712
(0.983) 		0.508
(0.832) 		0.205
(0.511) 		0.601
(0.904) 		0.0388
(0.207) 		1
(1.00) 		0.119
(0.384)
RRAS2 7 (1%) 482 0.281
(0.609) 		0.688
(0.966) 		0.508
(0.832) 		0.58
(0.885) 		0.731
(0.998) 		0.0403
(0.211) 		0.387
(0.714) 		0.293
(0.622)
TMLHE 5 (1%) 484 0.865
(1.00) 		1
(1.00) 		0.244
(0.569) 		0.0439
(0.222) 		0.823
(1.00) 		0.208
(0.516) 		0.507
(0.832) 		0.918
(1.00)
FBXL4 8 (2%) 481 0.87
(1.00) 		0.879
(1.00) 		0.904
(1.00) 		0.0597
(0.267) 		0.631
(0.926) 		0.0104
(0.0974) 		0.549
(0.866) 		0.764
(1.00)
PLCG2 21 (4%) 468 0.203
(0.509) 		0.548
(0.866) 		0.00402
(0.0578) 		0.164
(0.458) 		0.494
(0.82) 		0.818
(1.00) 		0.279
(0.607) 		0.0657
(0.276) 		0.386
(0.713) 		0.308
(0.637)
CYP2A6 12 (2%) 477 0.309
(0.637) 		1
(1.00) 		0.849
(1.00) 		0.179
(0.478) 		0.869
(1.00) 		0.21
(0.518) 		0.365
(0.694) 		0.0275
(0.168) 		0.757
(1.00) 		0.487
(0.814) 		0.356
(0.685) 		0.052
(0.246)
PSD3 11 (2%) 478 0.0563
(0.258) 		0.0767
(0.298) 		0.602
(0.905) 		0.358
(0.687) 		0.21
(0.518) 		0.0286
(0.172) 		0.426
(0.753) 		0.0982
(0.344)
NKTR 14 (3%) 475 0.223
(0.538) 		0.255
(0.578) 		0.128
(0.399) 		0.581
(0.886) 		0.588
(0.892) 		0.0965
(0.34) 		0.73
(0.997) 		0.0484
(0.235) 		0.887
(1.00) 		0.129
(0.4) 		0.269
(0.594) 		0.487
(0.814)
KLF5 12 (2%) 477 0.717
(0.987) 		0.786
(1.00) 		0.084
(0.314) 		0.742
(1.00) 		0.289
(0.618) 		0.0164
(0.127) 		0.303
(0.633) 		0.884
(1.00)
GANAB 14 (3%) 475 0.28
(0.608) 		0.231
(0.551) 		0.764
(1.00) 		0.0603
(0.268) 		0.197
(0.5) 		0.558
(0.87) 		0.0463
(0.229) 		0.424
(0.752) 		0.259
(0.582) 		0.422
(0.75) 		0.546
(0.865) 		0.218
(0.531)
OR2T34 6 (1%) 483 0.194
(0.497) 		0.787
(1.00) 		0.734
(0.999) 		0.172
(0.469) 		0.0443
(0.224) 		0.334
(0.661) 		0.575
(0.881) 		0.83
(1.00) 		0.112
(0.371)
C7ORF60 6 (1%) 483 0.0941
(0.336) 		0.521
(0.843) 		0.875
(1.00) 		0.758
(1.00) 		0.0482
(0.234) 		0.0833
(0.313) 		0.449
(0.775) 		0.632
(0.927) 		1
(1.00) 		1
(1.00)
KRTAP10-11 6 (1%) 483 0.735
(1.00) 		0.739
(1.00) 		0.0772
(0.3) 		0.667
(0.951) 		0.394
(0.719) 		0.0277
(0.169) 		0.943
(1.00) 		0.306
(0.635) 		0.484
(0.811) 		0.695
(0.969)
TMC8 7 (1%) 482 0.0606
(0.268) 		0.288
(0.617) 		0.544
(0.864) 		0.851
(1.00) 		0.168
(0.463) 		0.00603
(0.0707) 		0.322
(0.651) 		0.202
(0.508)
CPN2 10 (2%) 479 0.0501
(0.24) 		0.64
(0.928) 		0.176
(0.476) 		0.641
(0.928) 		0.195
(0.497) 		0.0164
(0.127) 		0.316
(0.645) 		0.581
(0.886) 		0.507
(0.832) 		0.0742
(0.292)
C20ORF151 11 (2%) 478 0.0317
(0.182) 		0.497
(0.823) 		0.927
(1.00) 		1
(1.00) 		0.324
(0.654) 		0.104
(0.356) 		0.297
(0.626) 		0.301
(0.63) 		0.39
(0.716) 		0.891
(1.00)
TF 14 (3%) 475 0.00327
(0.0514) 		0.339
(0.666) 		0.42
(0.748) 		1
(1.00) 		0.178
(0.477) 		0.509
(0.832) 		0.203
(0.51) 		0.28
(0.608) 		0.403
(0.728) 		0.185
(0.485)
LRRC37B 9 (2%) 480 0.883
(1.00) 		0.666
(0.951) 		0.196
(0.499) 		0.885
(1.00) 		0.189
(0.49) 		0.0531
(0.249) 		0.0285
(0.172) 		0.785
(1.00) 		0.705
(0.976) 		0.841
(1.00)
ZNF436 7 (1%) 482 0.283
(0.611) 		0.773
(1.00) 		0.386
(0.713) 		0.579
(0.884) 		0.378
(0.708) 		0.056
(0.258) 		0.0377
(0.203) 		0.114
(0.374)
A1CF 8 (2%) 481 0.017
(0.13) 		0.252
(0.577) 		0.755
(1.00) 		0.595
(0.899) 		0.33
(0.658) 		0.116
(0.377) 		0.468
(0.795) 		0.643
(0.929) 		0.955
(1.00) 		0.489
(0.816)
P2RX7 13 (3%) 476 0.629
(0.925) 		1
(1.00) 		0.811
(1.00) 		0.121
(0.387) 		0.213
(0.522) 		0.604
(0.905) 		0.0319
(0.183) 		0.0729
(0.291) 		0.144
(0.423) 		0.109
(0.365)
UCHL5 5 (1%) 484 0.636
(0.927) 		1
(1.00) 		0.0839
(0.314) 		0.0354
(0.195) 		0.644
(0.93) 		0.235
(0.555) 		0.866
(1.00) 		0.0859
(0.317)
CD34 6 (1%) 483 0.154
(0.441) 		0.329
(0.656) 		0.83
(1.00) 		0.527
(0.848) 		0.103
(0.356) 		0.0246
(0.159) 		0.575
(0.881) 		0.921
(1.00)
ZSWIM3 13 (3%) 476 0.287
(0.616) 		0.117
(0.379) 		0.33
(0.657) 		0.0198
(0.141) 		0.353
(0.681) 		0.695
(0.969) 		0.469
(0.796) 		0.386
(0.713) 		0.863
(1.00) 		0.297
(0.626)
DDHD2 11 (2%) 478 0.121
(0.387) 		0.0141
(0.117) 		0.167
(0.461) 		0.548
(0.865) 		0.6
(0.904) 		0.583
(0.887) 		0.79
(1.00) 		0.0871
(0.32) 		0.712
(0.983) 		0.251
(0.577) 		0.783
(1.00) 		0.448
(0.774)
NUFIP1 8 (2%) 481 0.00452
(0.0612) 		0.289
(0.617) 		0.874
(1.00) 		0.0556
(0.257) 		0.122
(0.388) 		0.102
(0.352) 		0.736
(1.00) 		0.694
(0.969)
ARHGEF1 15 (3%) 474 0.103
(0.356) 		0.251
(0.577) 		0.0892
(0.325) 		0.123
(0.389) 		0.653
(0.94) 		0.395
(0.72) 		0.555
(0.87) 		0.00959
(0.0928) 		0.43
(0.758) 		0.0749
(0.294) 		0.0705
(0.287) 		0.576
(0.882)
ATF2 7 (1%) 482 0.905
(1.00) 		0.629
(0.925) 		0.795
(1.00) 		1
(1.00) 		0.366
(0.696) 		0.00278
(0.0467) 		0.31
(0.637) 		0.685
(0.963)
GTF2A1L 21 (4%) 468 0.785
(1.00) 		0.689
(0.967) 		0.155
(0.442) 		0.573
(0.88) 		0.00675
(0.0753) 		0.691
(0.968) 		0.48
(0.808) 		0.95
(1.00) 		0.152
(0.437) 		0.626
(0.925) 		0.707
(0.979) 		0.78
(1.00)
PSMD6 8 (2%) 481 0.00471
(0.062) 		0.384
(0.712) 		0.55
(0.867) 		0.528
(0.848) 		0.558
(0.87) 		0.195
(0.497) 		0.684
(0.963) 		0.154
(0.441)
HPS6 7 (1%) 482 0.0643
(0.275) 		0.184
(0.485) 		0.0604
(0.268) 		0.113
(0.372) 		0.159
(0.451) 		0.206
(0.513) 		0.474
(0.802) 		0.183
(0.484) 		0.795
(1.00) 		0.0149
(0.121)
AP4B1 12 (2%) 477 0.0781
(0.301) 		0.721
(0.99) 		0.381
(0.711) 		0.0547
(0.254) 		0.569
(0.876) 		0.0559
(0.257) 		0.477
(0.806) 		0.0173
(0.131)
LEMD1 3 (1%) 486 0.279
(0.606) 		0.113
(0.372) 		0.0697
(0.285) 		0.00163
(0.0335) 		0.857
(1.00) 		0.618
(0.916)
RC3H2 10 (2%) 479 0.488
(0.815) 		0.604
(0.905) 		0.659
(0.945) 		0.696
(0.969) 		0.201
(0.506) 		0.03
(0.177) 		0.0796
(0.304) 		0.254
(0.577) 		0.553
(0.87) 		0.84
(1.00)
SBDS 3 (1%) 486 0.227
(0.545) 		0.0266
(0.165) 		0.15
(0.434) 		0.0779
(0.301) 		0.0888
(0.323) 		0.0733
(0.291)
SULT1E1 5 (1%) 484 0.0438
(0.222) 		0.0609
(0.268) 		0.684
(0.963) 		0.827
(1.00) 		0.263
(0.589) 		0.455
(0.782) 		0.931
(1.00) 		0.62
(0.918)
DYM 10 (2%) 479 0.00819
(0.0843) 		1
(1.00) 		0.0636
(0.274) 		0.445
(0.772) 		1
(1.00) 		0.328
(0.656) 		0.169
(0.464) 		0.232
(0.552) 		0.327
(0.656) 		0.316
(0.645)
PCDH9 45 (9%) 444 0.338
(0.666) 		0.287
(0.616) 		0.0298
(0.177) 		0.289
(0.617) 		0.193
(0.496) 		0.703
(0.975) 		0.191
(0.493) 		0.0697
(0.285) 		0.742
(1.00) 		0.442
(0.769) 		0.358
(0.687) 		0.869
(1.00)
CASP10 7 (1%) 482 0.719
(0.988) 		1
(1.00) 		0.195
(0.498) 		0.681
(0.962) 		0.494
(0.821) 		0.405
(0.73) 		0.477
(0.805) 		0.00441
(0.0608)
PSMB8 7 (1%) 482 0.195
(0.498) 		0.0608
(0.268) 		0.105
(0.358) 		0.388
(0.715) 		0.383
(0.712) 		0.289
(0.617) 		0.0506
(0.242) 		0.0272
(0.167) 		0.827
(1.00) 		0.382
(0.711)
BTF3L4 5 (1%) 484 0.141
(0.418) 		0.527
(0.848) 		0.359
(0.687) 		0.672
(0.955) 		0.0844
(0.314) 		0.00539
(0.0663) 		0.104
(0.357) 		0.877
(1.00)
NDST3 18 (4%) 471 0.126
(0.394) 		0.176
(0.476) 		0.0128
(0.111) 		0.193
(0.496) 		0.559
(0.871) 		0.888
(1.00) 		0.634
(0.927) 		0.383
(0.712) 		0.5
(0.826) 		0.803
(1.00) 		0.135
(0.411) 		0.565
(0.874)
MAGEA4 7 (1%) 482 0.199
(0.503) 		0.63
(0.926) 		0.896
(1.00) 		1
(1.00) 		0.436
(0.763) 		0.0213
(0.148) 		0.691
(0.968) 		0.52
(0.841) 		0.0857
(0.317) 		0.314
(0.642)
IL1F8 3 (1%) 486 0.417
(0.744) 		0.641
(0.928) 		0.0696
(0.284) 		0.0156
(0.124) 		0.0669
(0.278) 		0.283
(0.611)
CCR8 7 (1%) 482 0.0646
(0.275) 		0.0136
(0.115) 		0.454
(0.78) 		0.689
(0.967) 		0.388
(0.715) 		0.666
(0.951) 		1
(1.00) 		0.0742
(0.292) 		0.0899
(0.326) 		0.459
(0.786) 		0.553
(0.87) 		0.842
(1.00)
XG 7 (1%) 482 0.721
(0.99) 		0.45
(0.776) 		0.491
(0.817) 		0.684
(0.963) 		0.0622
(0.271) 		0.0441
(0.223) 		0.386
(0.713) 		0.816
(1.00) 		0.207
(0.514) 		0.195
(0.497)
CATSPER2 7 (1%) 482 0.00579
(0.0689) 		0.384
(0.712) 		0.434
(0.762) 		0.425
(0.753) 		0.456
(0.783) 		0.369
(0.698) 		0.944
(1.00) 		0.78
(1.00)
PPP2R5E 8 (2%) 481 0.0243
(0.158) 		0.0658
(0.276) 		0.164
(0.458) 		0.19
(0.492) 		0.114
(0.375) 		0.0606
(0.268) 		0.478
(0.806) 		0.0724
(0.29)
ADAM20 6 (1%) 483 0.34
(0.667) 		1
(1.00) 		0.197
(0.5) 		0.41
(0.736) 		0.0451
(0.226) 		0.129
(0.4) 		0.479
(0.808) 		0.431
(0.758) 		0.698
(0.971) 		0.111
(0.369)
ERGIC1 5 (1%) 484 1
(1.00) 		0.629
(0.925) 		0.136
(0.412) 		0.506
(0.832) 		0.0507
(0.242) 		0.0258
(0.163) 		0.128
(0.397) 		0.365
(0.694)
FAF2 8 (2%) 481 0.122
(0.388) 		0.0135
(0.115) 		0.165
(0.459) 		0.327
(0.656) 		0.817
(1.00) 		0.372
(0.701) 		0.926
(1.00) 		0.231
(0.551) 		0.914
(1.00) 		0.595
(0.898) 		0.304
(0.634) 		0.692
(0.969)
TBC1D10C 9 (2%) 480 0.164
(0.458) 		0.23
(0.55) 		0.874
(1.00) 		0.338
(0.665) 		0.602
(0.904) 		0.0104
(0.0977) 		0.071
(0.288) 		0.183
(0.484) 		0.595
(0.899) 		0.547
(0.865)
CD84 12 (2%) 477 0.0649
(0.276) 		0.186
(0.486) 		0.00471
(0.062) 		0.76
(1.00) 		0.606
(0.906) 		0.149
(0.432) 		0.734
(0.999) 		0.181
(0.481) 		0.712
(0.983) 		0.731
(0.998) 		1
(1.00) 		0.695
(0.969)
OR9G4 8 (2%) 481 0.755
(1.00) 		0.878
(1.00) 		0.658
(0.945) 		0.564
(0.873) 		0.558
(0.87) 		0.213
(0.522) 		0.483
(0.81) 		0.00614
(0.0717)
NBPF14 3 (1%) 486 0.66
(0.946) 		0.514
(0.835) 		0.795
(1.00) 		0.772
(1.00) 		0.0485
(0.235) 		0.108
(0.363) 		0.259
(0.583) 		0.402
(0.727)
SSX2IP 9 (2%) 480 0.00791
(0.0833) 		0.62
(0.918) 		0.46
(0.787) 		0.386
(0.713) 		1
(1.00) 		0.639
(0.927) 		0.858
(1.00) 		0.0781
(0.301) 		0.692
(0.969) 		0.248
(0.574)
AGT 10 (2%) 479 0.065
(0.276) 		0.187
(0.487) 		0.00079
(0.0209) 		0.29
(0.619) 		0.0747
(0.293) 		0.669
(0.953) 		0.448
(0.775) 		0.0852
(0.316) 		0.551
(0.868) 		0.191
(0.493) 		0.0827
(0.311) 		0.314
(0.642)
MRPS22 10 (2%) 479 0.486
(0.813) 		0.446
(0.773) 		0.212
(0.521) 		0.364
(0.693) 		0.309
(0.637) 		0.0336
(0.188) 		0.265
(0.591) 		0.0502
(0.241)
PANK1 7 (1%) 482 0.0651
(0.276) 		0.254
(0.577) 		0.0102
(0.0966) 		0.195
(0.498) 		0.618
(0.916) 		0.774
(1.00) 		0.0527
(0.248) 		0.0928
(0.333) 		0.636
(0.927) 		0.703
(0.975)
HCFC1R1 5 (1%) 484 0.385
(0.713) 		1
(1.00) 		0.372
(0.702) 		0.715
(0.986) 		0.602
(0.904) 		0.0217
(0.149) 		0.631
(0.926) 		0.257
(0.58)
EPRS 23 (5%) 466 0.018
(0.134) 		0.0738
(0.292) 		0.104
(0.357) 		0.453
(0.779) 		0.614
(0.914) 		0.498
(0.824) 		0.99
(1.00) 		0.273
(0.599) 		0.542
(0.862) 		0.325
(0.655) 		0.256
(0.578) 		0.841
(1.00)
HIST1H1A 9 (2%) 480 0.0191
(0.138) 		0.877
(1.00) 		0.91
(1.00) 		0.211
(0.519) 		0.0859
(0.317) 		0.0811
(0.308) 		0.583
(0.888) 		0.112
(0.371)
DLGAP5 10 (2%) 479 0.0637
(0.274) 		0.35
(0.678) 		0.339
(0.666) 		0.0488
(0.236) 		0.919
(1.00) 		0.134
(0.409) 		0.626
(0.924) 		0.643
(0.93) 		0.701
(0.973) 		0.928
(1.00)
HIVEP1 20 (4%) 469 0.0057
(0.0684) 		0.881
(1.00) 		0.0522
(0.246) 		0.239
(0.562) 		0.316
(0.644) 		0.192
(0.495) 		0.218
(0.531) 		0.175
(0.475) 		0.359
(0.687) 		0.321
(0.65) 		0.191
(0.493) 		0.604
(0.905)
CCNH 7 (1%) 482 0.327
(0.656) 		0.529
(0.849) 		0.005
(0.0638) 		0.336
(0.664) 		0.0973
(0.342) 		0.297
(0.626) 		0.377
(0.706) 		0.0867
(0.319) 		0.085
(0.315) 		0.562
(0.873)
NAP1L4 6 (1%) 483 1
(1.00) 		0.833
(1.00) 		0.14
(0.416) 		0.719
(0.987) 		0.37
(0.7) 		0.0115
(0.104) 		0.401
(0.727) 		0.185
(0.485)
MANF 4 (1%) 485 0.121
(0.387) 		0.556
(0.87) 		0.793
(1.00) 		0.422
(0.75) 		0.268
(0.593) 		0.0124
(0.11) 		0.598
(0.901) 		0.614
(0.914)
SLC16A5 10 (2%) 479 0.0609
(0.268) 		0.0612
(0.269) 		0.387
(0.714) 		0.737
(1.00) 		0.0373
(0.202) 		0.402
(0.727) 		0.893
(1.00) 		0.4
(0.725) 		0.439
(0.766) 		0.482
(0.81)
SUPT3H 11 (2%) 478 0.0318
(0.183) 		0.232
(0.552) 		0.168
(0.463) 		1
(1.00) 		0.172
(0.469) 		0.295
(0.624) 		0.739
(1.00) 		0.271
(0.596) 		0.379
(0.709) 		0.329
(0.656)
SERPINB5 6 (1%) 483 0.737
(1.00) 		0.631
(0.926) 		0.512
(0.834) 		1
(1.00) 		0.434
(0.762) 		0.942
(1.00) 		0.029
(0.174) 		0.419
(0.747)
METTL5 6 (1%) 483 0.444
(0.771) 		0.323
(0.652) 		0.509
(0.832) 		0.207
(0.513) 		0.89
(1.00) 		0.0763
(0.297) 		0.26
(0.584) 		0.0222
(0.151)
GAB3 12 (2%) 477 0.431
(0.758) 		0.545
(0.864) 		0.0153
(0.123) 		0.328
(0.656) 		0.912
(1.00) 		0.363
(0.692) 		0.601
(0.904) 		0.503
(0.829) 		0.417
(0.745) 		0.525
(0.847) 		0.627
(0.925) 		1
(1.00)
GIMAP5 8 (2%) 481 0.00091
(0.0229) 		0.0587
(0.265) 		0.232
(0.552) 		0.818
(1.00) 		0.808
(1.00) 		0.24
(0.564) 		0.95
(1.00) 		0.458
(0.784) 		0.072
(0.289)
TRIM55 19 (4%) 470 0.267
(0.593) 		0.25
(0.577) 		0.00037
(0.0126) 		0.614
(0.914) 		0.477
(0.805) 		1
(1.00) 		0.808
(1.00) 		0.177
(0.477) 		0.17
(0.466) 		0.812
(1.00) 		1
(1.00) 		0.546
(0.865)
IPPK 9 (2%) 480 0.462
(0.788) 		0.139
(0.415) 		0.00467
(0.0619) 		0.328
(0.656) 		0.234
(0.554) 		0.404
(0.729) 		0.377
(0.706) 		0.561
(0.872) 		0.136
(0.411) 		0.84
(1.00)
PIK3C2G 23 (5%) 466 0.0714
(0.288) 		1
(1.00) 		0.0013
(0.0292) 		0.334
(0.661) 		0.0914
(0.33) 		0.393
(0.717) 		0.317
(0.646) 		0.0796
(0.304) 		0.613
(0.913) 		0.361
(0.69) 		0.932
(1.00) 		0.893
(1.00)
SIX5 5 (1%) 484 0.177
(0.477) 		0.113
(0.372) 		0.166
(0.46) 		0.403
(0.729) 		0.456
(0.783) 		0.0212
(0.147) 		0.506
(0.832) 		0.229
(0.549)
C1ORF85 8 (2%) 481 0.0593
(0.267) 		0.633
(0.927) 		0.0723
(0.29) 		0.565
(0.873) 		0.0939
(0.336) 		0.0111
(0.102) 		0.955
(1.00) 		0.813
(1.00) 		0.0956
(0.339) 		0.766
(1.00)
CYP3A7 12 (2%) 477 0.034
(0.189) 		0.546
(0.865) 		0.223
(0.538) 		1
(1.00) 		0.777
(1.00) 		0.696
(0.969) 		0.762
(1.00) 		0.729
(0.996) 		0.541
(0.861) 		0.287
(0.616)
PAK1 11 (2%) 478 0.0733
(0.291) 		1
(1.00) 		0.00279
(0.0467) 		0.288
(0.617) 		0.082
(0.31) 		1
(1.00) 		0.678
(0.959) 		0.649
(0.936) 		0.476
(0.804) 		0.655
(0.942)
IRGQ 5 (1%) 484 0.384
(0.712) 		0.391
(0.716) 		0.138
(0.414) 		0.717
(0.987) 		0.602
(0.905) 		0.0289
(0.174) 		0.587
(0.891) 		0.0856
(0.316)
NLRP1 28 (6%) 461 0.126
(0.395) 		0.276
(0.602) 		0.00505
(0.064) 		0.38
(0.709) 		0.706
(0.978) 		0.434
(0.761) 		0.776
(1.00) 		0.11
(0.369) 		0.211
(0.52) 		0.954
(1.00) 		0.106
(0.359) 		0.602
(0.905)
METT5D1 7 (1%) 482 0.374
(0.704) 		0.382
(0.711) 		0.375
(0.705) 		0.506
(0.832) 		0.121
(0.387) 		0.0464
(0.23) 		0.296
(0.625) 		0.389
(0.716) 		0.389
(0.716) 		0.267
(0.593)
BCAP29 8 (2%) 481 0.0646
(0.275) 		0.126
(0.394) 		0.546
(0.865) 		0.854
(1.00) 		0.0178
(0.133) 		0.0542
(0.252) 		0.0696
(0.284) 		0.435
(0.762)
ATAD1 9 (2%) 480 0.0232
(0.155) 		0.18
(0.48) 		0.176
(0.476) 		0.638
(0.927) 		0.393
(0.718) 		0.0695
(0.284) 		0.756
(1.00) 		0.579
(0.885)
PRPF4B 16 (3%) 473 0.402
(0.728) 		1
(1.00) 		0.103
(0.354) 		0.936
(1.00) 		0.421
(0.748) 		1
(1.00) 		0.194
(0.497) 		0.00665
(0.0747) 		0.0736
(0.292) 		0.258
(0.58) 		0.0954
(0.338) 		0.764
(1.00)
ABCB6 8 (2%) 481 0.31
(0.638) 		0.554
(0.87) 		0.127
(0.396) 		0.0193
(0.139) 		0.141
(0.417) 		1
(1.00) 		0.827
(1.00) 		0.0902
(0.327) 		0.902
(1.00) 		0.642
(0.929)
GGNBP2 13 (3%) 476 0.0409
(0.213) 		1
(1.00) 		0.36
(0.689) 		0.434
(0.762) 		0.423
(0.75) 		0.245
(0.57) 		0.114
(0.375) 		0.0576
(0.262) 		0.187
(0.488) 		0.575
(0.881)
CCDC3 5 (1%) 484 0.179
(0.478) 		0.689
(0.967) 		1
(1.00) 		1
(1.00) 		0.243
(0.568) 		0.00128
(0.029) 		0.325
(0.654) 		0.336
(0.664)
IFLTD1 13 (3%) 476 0.441
(0.768) 		0.0385
(0.206) 		0.29
(0.618) 		0.837
(1.00) 		0.927
(1.00) 		0.92
(1.00) 		0.784
(1.00) 		0.613
(0.913) 		0.146
(0.425) 		0.203
(0.509)
HIST1H1B 8 (2%) 481 0.0664
(0.277) 		0.891
(1.00) 		0.239
(0.561) 		0.759
(1.00) 		0.091
(0.329) 		0.00802
(0.0836) 		0.0712
(0.288) 		0.291
(0.619)
MAGOHB 4 (1%) 485 0.222
(0.537) 		0.0606
(0.268) 		0.83
(1.00) 		0.673
(0.955) 		0.0677
(0.28) 		0.0308
(0.18) 		0.346
(0.674) 		0.384
(0.712) 		0.705
(0.976) 		0.564
(0.873)
ZNF577 13 (3%) 476 0.013
(0.112) 		0.64
(0.928) 		0.123
(0.388) 		0.143
(0.422) 		1
(1.00) 		0.569
(0.876) 		0.434
(0.762) 		0.0534
(0.25) 		0.509
(0.832) 		0.136
(0.412) 		0.0848
(0.315) 		0.563
(0.873)
MTIF2 11 (2%) 478 0.0651
(0.276) 		1
(1.00) 		0.146
(0.426) 		0.204
(0.51) 		0.213
(0.523) 		0.166
(0.46) 		0.171
(0.467) 		0.0326
(0.185) 		1
(1.00) 		0.0706
(0.287) 		0.627
(0.925) 		0.195
(0.498)
IGDCC3 12 (2%) 477 0.0459
(0.228) 		0.529
(0.849) 		0.48
(0.808) 		0.556
(0.87) 		0.909
(1.00) 		0.911
(1.00) 		0.38
(0.709) 		0.42
(0.748) 		0.599
(0.902) 		0.381
(0.71) 		0.781
(1.00) 		0.446
(0.773)
C15ORF33 12 (2%) 477 0.134
(0.408) 		0.114
(0.375) 		0.0513
(0.244) 		0.444
(0.771) 		1
(1.00) 		0.585
(0.889) 		0.489
(0.816) 		0.612
(0.912) 		0.0475
(0.233) 		0.702
(0.974)
MAOB 9 (2%) 480 0.386
(0.713) 		0.636
(0.927) 		0.831
(1.00) 		0.327
(0.656) 		0.366
(0.695) 		0.212
(0.521) 		0.0163
(0.127) 		0.33
(0.657) 		0.484
(0.811) 		0.381
(0.71)
MMP27 9 (2%) 480 0.0316
(0.182) 		0.554
(0.87) 		0.444
(0.771) 		0.528
(0.848) 		0.506
(0.832) 		1
(1.00) 		0.935
(1.00) 		0.712
(0.983) 		0.402
(0.728) 		0.186
(0.486) 		0.872
(1.00) 		0.564
(0.873)
HOOK3 11 (2%) 478 0.372
(0.702) 		0.178
(0.477) 		0.0328
(0.185) 		0.18
(0.48) 		0.696
(0.969) 		0.11
(0.368) 		0.138
(0.414) 		0.445
(0.772) 		0.759
(1.00) 		0.589
(0.893) 		0.871
(1.00) 		1
(1.00)
ATP6V0A4 13 (3%) 476 0.113
(0.373) 		0.88
(1.00) 		0.00089
(0.0226) 		0.205
(0.512) 		0.713
(0.983) 		1
(1.00) 		0.283
(0.611) 		0.0993
(0.346) 		0.518
(0.84) 		0.196
(0.499)
RCOR1 4 (1%) 485 0.122
(0.388) 		0.111
(0.369) 		0.796
(1.00) 		0.589
(0.894) 		0.918
(1.00) 		0.0168
(0.129) 		0.598
(0.901) 		0.568
(0.875)
OR1L1 8 (2%) 481 0.37
(0.699) 		0.876
(1.00) 		0.509
(0.832) 		0.759
(1.00) 		0.0199
(0.142) 		0.143
(0.421) 		0.511
(0.833) 		0.186
(0.486)
CCDC55 13 (3%) 476 0.236
(0.557) 		0.196
(0.499) 		0.177
(0.476) 		1
(1.00) 		0.0763
(0.297) 		0.00466
(0.0619) 		0.0921
(0.331) 		0.378
(0.707) 		0.872
(1.00) 		1
(1.00)
AASDH 21 (4%) 468 0.312
(0.639) 		0.556
(0.87) 		0.619
(0.917) 		0.541
(0.861) 		0.688
(0.966) 		0.819
(1.00) 		0.2
(0.505) 		0.021
(0.146) 		0.358
(0.687) 		0.268
(0.594) 		0.166
(0.46) 		0.566
(0.874)
IGSF5 15 (3%) 474 0.0782
(0.301) 		0.154
(0.44) 		0.00573
(0.0686) 		0.124
(0.39) 		0.649
(0.935) 		0.742
(1.00) 		0.283
(0.611) 		0.811
(1.00) 		0.342
(0.669) 		0.0702
(0.286)
TPK1 8 (2%) 481 0.477
(0.805) 		0.233
(0.554) 		0.633
(0.927) 		0.341
(0.668) 		0.0997
(0.347) 		0.0242
(0.158) 		0.507
(0.832) 		0.547
(0.865) 		0.782
(1.00) 		1
(1.00)
GRK5 12 (2%) 477 0.407
(0.732) 		0.116
(0.379) 		0.0114
(0.104) 		0.445
(0.772) 		0.206
(0.513) 		0.763
(1.00) 		0.895
(1.00) 		0.396
(0.721) 		0.31
(0.637) 		0.731
(0.998)
STAU1 11 (2%) 478 0.211
(0.519) 		0.852
(1.00) 		0.676
(0.957) 		0.559
(0.871) 		0.0873
(0.32) 		0.00461
(0.0617) 		0.183
(0.484) 		0.48
(0.808) 		0.0719
(0.289) 		1
(1.00)
IKBKB 9 (2%) 480 0.244
(0.569) 		0.776
(1.00) 		0.111
(0.369) 		0.0161
(0.126) 		0.877
(1.00) 		0.2
(0.504) 		0.894
(1.00) 		0.977
(1.00)
PPIL5 4 (1%) 485 0.733
(0.999) 		0.397
(0.722) 		0.454
(0.78) 		0.826
(1.00) 		0.92
(1.00) 		0.143
(0.42) 		1
(1.00) 		0.0121
(0.108)
RNF8 7 (1%) 482 0.106
(0.359) 		0.0273
(0.167) 		0.51
(0.833) 		0.292
(0.621) 		0.192
(0.495) 		0.214
(0.523) 		0.172
(0.469) 		0.0997
(0.347)
CNTNAP3 14 (3%) 475 0.0268
(0.166) 		0.738
(1.00) 		0.0745
(0.293) 		0.123
(0.388) 		0.821
(1.00) 		0.247
(0.573) 		0.301
(0.63) 		0.247
(0.572) 		0.486
(0.813) 		0.335
(0.663) 		0.626
(0.925) 		0.314
(0.642)
CHM 5 (1%) 484 0.0513
(0.244) 		0.203
(0.509) 		0.359
(0.688) 		0.673
(0.955) 		0.373
(0.703) 		0.0128
(0.112) 		0.324
(0.653) 		0.368
(0.697) 		0.705
(0.976) 		0.561
(0.872)
MAPK14 8 (2%) 481 0.0649
(0.276) 		0.461
(0.788) 		0.0113
(0.104) 		0.526
(0.847) 		1
(1.00) 		0.411
(0.737) 		0.86
(1.00) 		0.789
(1.00) 		0.309
(0.637) 		0.486
(0.814)
CXCR7 21 (4%) 468 0.256
(0.578) 		0.369
(0.698) 		0.148
(0.431) 		0.7
(0.972) 		0.492
(0.819) 		0.941
(1.00) 		0.327
(0.656) 		0.0353
(0.194) 		0.412
(0.739) 		0.173
(0.47) 		0.699
(0.971) 		0.604
(0.905)
ZNF443 9 (2%) 480 0.447
(0.774) 		0.581
(0.886) 		0.00176
(0.0347) 		0.512
(0.834) 		0.31
(0.637) 		0.51
(0.833) 		0.199
(0.503) 		0.791
(1.00) 		0.438
(0.765) 		0.634
(0.927)
PIGC 4 (1%) 485 0.341
(0.668) 		1
(1.00) 		0.553
(0.87) 		0.526
(0.847) 		0.16
(0.451) 		0.203
(0.509) 		0.0272
(0.167) 		0.796
(1.00)
UBR2 19 (4%) 470 0.0103
(0.097) 		0.528
(0.848) 		0.797
(1.00) 		0.794
(1.00) 		0.287
(0.616) 		0.129
(0.399) 		0.805
(1.00) 		0.118
(0.382) 		0.724
(0.992) 		0.831
(1.00) 		0.868
(1.00) 		0.293
(0.621)
CPLX4 5 (1%) 484 0.0433
(0.22) 		0.848
(1.00) 		0.342
(0.668) 		0.376
(0.706) 		0.197
(0.5) 		0.687
(0.965) 		0.855
(1.00)
ACPP 4 (1%) 485 0.0316
(0.182) 		0.557
(0.87) 		0.12
(0.385) 		0.183
(0.484) 		0.823
(1.00) 		0.391
(0.716) 		0.669
(0.954)
SCYL2 21 (4%) 468 0.373
(0.703) 		1
(1.00) 		0.143
(0.421) 		0.616
(0.915) 		0.904
(1.00) 		0.346
(0.673) 		0.117
(0.38) 		0.00048
(0.0151) 		0.474
(0.802) 		0.368
(0.697) 		0.193
(0.496) 		0.868
(1.00)
ACVR1C 11 (2%) 478 0.785
(1.00) 		0.348
(0.676) 		0.609
(0.91) 		1
(1.00) 		0.00817
(0.0842) 		0.288
(0.616) 		0.663
(0.949) 		0.44
(0.767) 		0.113
(0.373) 		0.542
(0.862) 		0.254
(0.577) 		1
(1.00)
ZNF643 10 (2%) 479 0.0156
(0.124) 		1
(1.00) 		0.625
(0.924) 		1
(1.00) 		0.31
(0.637) 		0.253
(0.577) 		0.849
(1.00) 		0.181
(0.482) 		1
(1.00) 		0.423
(0.75)
APBA1 14 (3%) 475 0.387
(0.714) 		0.548
(0.866) 		0.0233
(0.155) 		0.129
(0.4) 		0.42
(0.748) 		0.0918
(0.331) 		0.188
(0.489) 		0.584
(0.888) 		0.115
(0.375) 		0.57
(0.877) 		0.783
(1.00) 		0.112
(0.371)
RREB1 13 (3%) 476 0.121
(0.387) 		0.185
(0.485) 		0.349
(0.677) 		0.919
(1.00) 		0.183
(0.484) 		1
(1.00) 		0.547
(0.865) 		0.0127
(0.111) 		0.265
(0.59) 		0.483
(0.81) 		0.781
(1.00) 		0.38
(0.709)
KIAA0355 7 (1%) 482 0.547
(0.865) 		0.592
(0.897) 		0.0156
(0.124) 		0.0676
(0.28) 		0.297
(0.626) 		0.126
(0.394) 		0.336
(0.664) 		0.0575
(0.261)
XRCC6 8 (2%) 481 0.063
(0.272) 		1
(1.00) 		0.0598
(0.267) 		0.331
(0.658) 		0.733
(0.999) 		0.64
(0.928) 		0.288
(0.616) 		0.0142
(0.117) 		0.377
(0.707) 		0.0744
(0.293)
SMOX 8 (2%) 481 0.0659
(0.276) 		0.182
(0.483) 		0.0603
(0.268) 		0.738
(1.00) 		0.731
(0.998) 		1
(1.00) 		0.381
(0.71) 		0.0661
(0.277) 		0.132
(0.406) 		0.0488
(0.236)
DUSP16 11 (2%) 478 0.0979
(0.343) 		0.0724
(0.29) 		0.168
(0.462) 		0.0536
(0.251) 		0.0411
(0.214) 		0.255
(0.578) 		0.264
(0.589) 		0.244
(0.569) 		0.474
(0.802) 		0.119
(0.384)
CCDC6 11 (2%) 478 0.03
(0.177) 		0.0949
(0.338) 		0.426
(0.753) 		0.31
(0.637) 		0.332
(0.66) 		0.316
(0.645) 		0.0577
(0.262) 		0.915
(1.00)
SGOL2 16 (3%) 473 0.0153
(0.123) 		0.833
(1.00) 		0.0527
(0.248) 		0.576
(0.882) 		0.298
(0.627) 		0.635
(0.927) 		0.784
(1.00) 		0.131
(0.403) 		0.239
(0.563) 		0.0567
(0.259) 		0.626
(0.925) 		1
(1.00)
C14ORF180 4 (1%) 485 0.535
(0.854) 		1
(1.00) 		0.683
(0.963) 		0.828
(1.00) 		0.139
(0.415) 		0.00325
(0.0513) 		0.0681
(0.281) 		0.248
(0.574) 		0.138
(0.414) 		0.693
(0.969)
USP14 7 (1%) 482 0.0058
(0.0689) 		0.141
(0.417) 		0.509
(0.832) 		0.579
(0.885) 		0.169
(0.465) 		0.0657
(0.276) 		0.48
(0.808) 		0.908
(1.00) 		0.872
(1.00) 		0.841
(1.00)
TMEM144 8 (2%) 481 0.309
(0.637) 		0.177
(0.477) 		0.0612
(0.269) 		0.393
(0.718) 		1
(1.00) 		0.76
(1.00) 		0.414
(0.741) 		0.0473
(0.232) 		0.733
(0.999) 		0.118
(0.382) 		0.136
(0.411) 		1
(1.00)
SEZ6L 20 (4%) 469 0.158
(0.449) 		0.34
(0.667) 		0.0143
(0.118) 		0.507
(0.832) 		0.306
(0.635) 		0.649
(0.936) 		1
(1.00) 		0.652
(0.939) 		0.426
(0.753) 		0.268
(0.594) 		0.0969
(0.341) 		0.869
(1.00)
GDF6 7 (1%) 482 0.0177
(0.133) 		0.462
(0.788) 		1
(1.00) 		0.392
(0.717) 		1
(1.00) 		1
(1.00) 		0.351
(0.678) 		0.217
(0.529) 		0.496
(0.823) 		0.574
(0.881)
LIPH 10 (2%) 479 0.0663
(0.277) 		1
(1.00) 		0.0572
(0.261) 		1
(1.00) 		0.513
(0.835) 		0.267
(0.592) 		0.497
(0.823) 		0.202
(0.507) 		1
(1.00) 		0.0266
(0.165)
GLT8D1 9 (2%) 480 0.628
(0.925) 		0.12
(0.386) 		0.127
(0.396) 		0.254
(0.577) 		0.332
(0.659) 		0.864
(1.00) 		0.395
(0.72) 		0.0355
(0.195) 		0.696
(0.969) 		0.784
(1.00)
C20ORF43 4 (1%) 485 0.037
(0.201) 		0.513
(0.835) 		0.764
(1.00) 		0.225
(0.541) 		0.746
(1.00) 		0.0593
(0.266)
ST14 12 (2%) 477 0.208
(0.515) 		0.763
(1.00) 		0.692
(0.969) 		0.498
(0.824) 		0.264
(0.59) 		0.00835
(0.0851) 		0.39
(0.716) 		0.194
(0.497) 		0.703
(0.975) 		0.839
(1.00)
CTTN 5 (1%) 484 0.176
(0.476) 		0.555
(0.87) 		0.613
(0.913) 		0.592
(0.896) 		0.114
(0.374) 		0.0427
(0.218) 		0.504
(0.831) 		0.749
(1.00)
NFIB 14 (3%) 475 0.223
(0.537) 		0.739
(1.00) 		0.00304
(0.0493) 		0.142
(0.419) 		0.523
(0.844) 		0.265
(0.59) 		0.38
(0.709) 		0.0972
(0.342) 		0.597
(0.9) 		0.111
(0.369) 		0.78
(1.00) 		1
(1.00)
MIA2 12 (2%) 477 0.193
(0.496) 		0.789
(1.00) 		0.425
(0.753) 		0.399
(0.725) 		0.54
(0.86) 		0.783
(1.00) 		0.173
(0.47) 		0.0824
(0.311) 		0.772
(1.00) 		0.0372
(0.201) 		0.463
(0.789) 		0.603
(0.905)
RPS6KA6 18 (4%) 471 0.697
(0.97) 		0.656
(0.943) 		0.25
(0.576) 		0.864
(1.00) 		0.523
(0.844) 		0.51
(0.832) 		0.652
(0.939) 		0.123
(0.389) 		0.163
(0.457) 		0.219
(0.532) 		0.00255
(0.0441) 		0.755
(1.00)
LRRTM2 9 (2%) 480 0.132
(0.405) 		0.0666
(0.277) 		0.109
(0.366) 		0.0186
(0.136) 		0.0803
(0.305) 		0.336
(0.664) 		1
(1.00) 		0.67
(0.954) 		0.341
(0.668) 		0.117
(0.379)
ZNF608 13 (3%) 476 0.403
(0.728) 		0.677
(0.958) 		0.0233
(0.155) 		0.113
(0.373) 		0.911
(1.00) 		0.605
(0.906) 		0.433
(0.76) 		0.25
(0.576) 		0.766
(1.00) 		0.838
(1.00) 		0.597
(0.9) 		1
(1.00)
IDE 13 (3%) 476 0.171
(0.468) 		0.445
(0.772) 		0.535
(0.854) 		0.161
(0.453) 		0.0148
(0.121) 		0.582
(0.887) 		0.87
(1.00) 		0.943
(1.00) 		0.794
(1.00) 		0.628
(0.925)
ERMP1 11 (2%) 478 0.135
(0.411) 		1
(1.00) 		0.0288
(0.173) 		0.0757
(0.296) 		0.513
(0.835) 		0.911
(1.00) 		0.633
(0.927) 		0.654
(0.941) 		0.474
(0.802) 		0.641
(0.928)
NOV 10 (2%) 479 1
(1.00) 		0.177
(0.477) 		0.172
(0.469) 		0.11
(0.369) 		0.0837
(0.313) 		0.0327
(0.185) 		0.43
(0.757) 		0.163
(0.456)
XRN1 24 (5%) 465 0.158
(0.448) 		0.377
(0.706) 		0.0459
(0.228) 		0.526
(0.847) 		0.207
(0.514) 		0.414
(0.741) 		0.425
(0.753) 		0.375
(0.705) 		0.518
(0.84) 		0.104
(0.356) 		0.0579
(0.263) 		0.362
(0.691)
FAM175A 8 (2%) 481 0.0081
(0.0839) 		0.254
(0.577) 		0.0606
(0.268) 		1
(1.00) 		0.275
(0.602) 		0.641
(0.928) 		0.674
(0.955) 		0.114
(0.375) 		0.15
(0.433) 		0.332
(0.659)
SAMD4A 11 (2%) 478 0.205
(0.511) 		0.833
(1.00) 		0.0324
(0.184) 		0.326
(0.656) 		0.474
(0.802) 		0.562
(0.872) 		0.161
(0.453) 		0.304
(0.634) 		0.649
(0.936) 		0.143
(0.421)
CCDC11 10 (2%) 479 0.0629
(0.272) 		0.253
(0.577) 		0.623
(0.921) 		0.774
(1.00) 		0.279
(0.606) 		0.636
(0.927) 		0.969
(1.00) 		0.0075
(0.0805) 		0.208
(0.515) 		0.815
(1.00)
UEVLD 4 (1%) 485 0.34
(0.667) 		0.512
(0.834) 		0.3
(0.63) 		0.0429
(0.219) 		1
(1.00) 		0.834
(1.00)
HOXD9 5 (1%) 484 0.387
(0.714) 		0.78
(1.00) 		0.845
(1.00) 		0.853
(1.00) 		0.487
(0.814) 		0.0403
(0.211) 		0.687
(0.965) 		0.751
(1.00)
MGEA5 8 (2%) 481 0.0182
(0.135) 		0.517
(0.839) 		0.163
(0.457) 		1
(1.00) 		0.561
(0.872) 		0.79
(1.00) 		0.954
(1.00) 		0.571
(0.878)
C7ORF33 6 (1%) 483 0.222
(0.536) 		0.117
(0.38) 		0.0218
(0.15) 		0.139
(0.415) 		0.85
(1.00) 		0.144
(0.424) 		0.609
(0.91) 		0.207
(0.513) 		0.363
(0.692)
CENPA 5 (1%) 484 0.0727
(0.291) 		0.0617
(0.27) 		0.0436
(0.221) 		1
(1.00) 		0.269
(0.594) 		0.304
(0.633) 		0.0634
(0.273) 		0.271
(0.596) 		0.838
(1.00)
C17ORF58 3 (1%) 486 0.275
(0.602) 		0.777
(1.00) 		0.0679
(0.281) 		0.00144
(0.031) 		0.859
(1.00) 		0.672
(0.955)
OR5H1 10 (2%) 479 0.121
(0.387) 		0.251
(0.577) 		0.251
(0.577) 		0.233
(0.553) 		0.733
(0.999) 		0.565
(0.874) 		0.495
(0.822) 		0.479
(0.807) 		0.0196
(0.14) 		0.325
(0.654) 		0.0858
(0.317) 		0.448
(0.774)
RNASE2 5 (1%) 484 0.0443
(0.224) 		0.513
(0.835) 		0.685
(0.964) 		0.828
(1.00) 		0.687
(0.965) 		0.298
(0.627) 		1
(1.00) 		0.929
(1.00)
CTSL1 8 (2%) 481 0.0643
(0.275) 		0.184
(0.485) 		0.207
(0.513) 		1
(1.00) 		0.876
(1.00) 		1
(1.00) 		0.859
(1.00) 		0.0478
(0.233) 		1
(1.00) 		0.138
(0.414)
KBTBD8 8 (2%) 481 0.0657
(0.276) 		1
(1.00) 		0.0394
(0.209) 		0.327
(0.656) 		1
(1.00) 		0.666
(0.951) 		0.888
(1.00) 		0.201
(0.505) 		0.825
(1.00) 		0.187
(0.488)
CPEB1 7 (1%) 482 0.12
(0.386) 		1
(1.00) 		0.0097
(0.0935) 		0.202
(0.508) 		0.372
(0.702) 		0.596
(0.899) 		0.442
(0.769) 		0.95
(1.00) 		0.524
(0.845) 		0.778
(1.00)
UBD 4 (1%) 485 0.12
(0.385) 		0.781
(1.00) 		1
(1.00) 		0.771
(1.00) 		0.162
(0.455) 		0.042
(0.216) 		0.107
(0.361) 		0.884
(1.00)
OR8K1 13 (3%) 476 0.816
(1.00) 		1
(1.00) 		0.0464
(0.229) 		0.905
(1.00) 		0.921
(1.00) 		0.915
(1.00) 		0.938
(1.00) 		0.141
(0.418) 		0.56
(0.871) 		0.0773
(0.3)
MPZL1 7 (1%) 482 0.55
(0.866) 		0.876
(1.00) 		0.511
(0.833) 		0.862
(1.00) 		0.831
(1.00) 		0.0189
(0.137) 		0.862
(1.00) 		0.341
(0.668) 		0.136
(0.412) 		1
(1.00)
TOMM70A 10 (2%) 479 0.122
(0.388) 		0.255
(0.577) 		0.127
(0.396) 		0.287
(0.616) 		0.32
(0.649) 		0.357
(0.686) 		0.235
(0.555) 		0.0189
(0.137) 		0.187
(0.488) 		0.0897
(0.326) 		0.255
(0.578) 		0.564
(0.873)
BMP10 14 (3%) 475 0.611
(0.911) 		0.233
(0.553) 		0.256
(0.578) 		1
(1.00) 		0.171
(0.468) 		0.51
(0.832) 		0.28
(0.608) 		0.105
(0.358) 		0.047
(0.231) 		0.629
(0.925) 		0.226
(0.544) 		0.188
(0.49)
ZNF41 11 (2%) 478 0.0406
(0.212) 		0.679
(0.96) 		0.263
(0.589) 		1
(1.00) 		0.277
(0.604) 		0.159
(0.45) 		0.827
(1.00) 		0.874
(1.00) 		0.42
(0.748) 		0.439
(0.766) 		0.0845
(0.314) 		0.0846
(0.314)
SLC26A7 18 (4%) 471 0.201
(0.506) 		0.308
(0.637) 		0.111
(0.369) 		0.0551
(0.255) 		0.213
(0.522) 		0.572
(0.878) 		0.262
(0.587) 		0.0041
(0.0584) 		0.346
(0.674) 		0.13
(0.401) 		0.0843
(0.314) 		0.311
(0.639)
ARMC2 8 (2%) 481 0.374
(0.704) 		0.556
(0.87) 		0.0665
(0.277) 		0.556
(0.87) 		0.374
(0.704) 		0.717
(0.987) 		0.0724
(0.29) 		0.158
(0.449) 		0.735
(1.00) 		0.788
(1.00) 		0.00412
(0.0586) 		0.562
(0.873)
CHMP4B 3 (1%) 486 0.0361
(0.197) 		0.615
(0.914) 		0.773
(1.00) 		0.605
(0.906) 		0.313
(0.64) 		1
(1.00) 		0.67
(0.954)
TMPRSS5 7 (1%) 482 0.106
(0.36) 		0.328
(0.656) 		0.446
(0.773) 		0.411
(0.738) 		0.167
(0.461) 		0.0184
(0.136) 		0.386
(0.713) 		0.09
(0.326) 		0.253
(0.577) 		1
(1.00)
GSTM4 6 (1%) 483 0.0927
(0.333) 		0.204
(0.51) 		0.139
(0.415) 		1
(1.00) 		0.432
(0.76) 		0.01
(0.0955) 		1
(1.00) 		0.479
(0.808) 		0.781
(1.00) 		1
(1.00)
KIAA1967 12 (2%) 477 0.104
(0.357) 		0.0721
(0.29) 		0.0813
(0.308) 		0.681
(0.961) 		1
(1.00) 		0.194
(0.497) 		0.955
(1.00) 		0.0884
(0.323) 		0.412
(0.739) 		0.00658
(0.0743) 		0.359
(0.688) 		0.671
(0.954)
ZNF266 9 (2%) 480 0.358
(0.687) 		0.848
(1.00) 		0.245
(0.57) 		1
(1.00) 		0.579
(0.885) 		0.0186
(0.136) 		0.755
(1.00) 		0.983
(1.00) 		0.113
(0.373) 		0.397
(0.722)
MCM9 9 (2%) 480 0.00158
(0.0328) 		0.835
(1.00) 		0.256
(0.578) 		0.328
(0.656) 		0.767
(1.00) 		0.492
(0.819) 		0.733
(0.999) 		0.311
(0.638) 		0.696
(0.969) 		0.545
(0.864)
WDR17 26 (5%) 463 0.0922
(0.332) 		0.232
(0.552) 		0.00134
(0.0297) 		0.248
(0.573) 		0.122
(0.388) 		0.174
(0.473) 		0.175
(0.474) 		0.225
(0.541) 		0.317
(0.646) 		0.216
(0.526)
CNOT6L 7 (1%) 482 0.279
(0.607) 		1
(1.00) 		0.295
(0.624) 		0.0292
(0.175) 		0.589
(0.894) 		0.0626
(0.271) 		0.792
(1.00) 		0.763
(1.00)
C3ORF27 3 (1%) 486 0.414
(0.742) 		0.795
(1.00) 		0.593
(0.897) 		0.52
(0.841) 		1
(1.00) 		1
(1.00) 		0.0294
(0.175)
SFRS12IP1 5 (1%) 484 0.0332
(0.186) 		1
(1.00) 		0.797
(1.00) 		0.772
(1.00) 		1
(1.00) 		0.211
(0.52) 		0.508
(0.832) 		0.578
(0.884)
LSM14A 11 (2%) 478 0.258
(0.58) 		0.637
(0.927) 		0.00513
(0.0645) 		0.329
(0.656) 		0.446
(0.772) 		0.762
(1.00) 		0.249
(0.575) 		0.338
(0.666) 		0.651
(0.938) 		0.0731
(0.291)
EPC2 10 (2%) 479 0.0645
(0.275) 		0.181
(0.482) 		0.511
(0.833) 		1
(1.00) 		0.105
(0.358) 		0.00026
(0.00988) 		0.168
(0.463) 		0.0648
(0.275) 		0.27
(0.595) 		0.87
(1.00)
KIAA0196 11 (2%) 478 0.0416
(0.215) 		0.231
(0.551) 		0.072
(0.289) 		1
(1.00) 		0.104
(0.357) 		0.917
(1.00) 		0.489
(0.816) 		0.171
(0.468) 		0.662
(0.948) 		0.173
(0.47)
AKT1 11 (2%) 478 0.168
(0.462) 		0.243
(0.568) 		0.764
(1.00) 		0.45
(0.776) 		0.156
(0.444) 		0.0129
(0.112) 		0.584
(0.888) 		0.0664
(0.277) 		0.594
(0.898) 		1
(1.00)
TBCE 3 (1%) 486 0.121
(0.387) 		1
(1.00) 		0.0372
(0.201) 		0.374
(0.704) 		0.848
(1.00) 		0.39
(0.716) 		0.672
(0.955)
STK3 9 (2%) 480 0.125
(0.393) 		0.254
(0.577) 		0.696
(0.969) 		0.213
(0.522) 		0.318
(0.646) 		0.0134
(0.114) 		0.733
(0.999) 		0.471
(0.799)
C6ORF70 14 (3%) 475 0.0646
(0.275) 		0.461
(0.788) 		0.0239
(0.157) 		0.25
(0.577) 		0.749
(1.00) 		0.925
(1.00) 		0.216
(0.527) 		0.225
(0.541) 		0.674
(0.955) 		0.861
(1.00) 		0.781
(1.00) 		0.694
(0.969)
HIP1 14 (3%) 475 0.122
(0.388) 		0.737
(1.00) 		0.267
(0.593) 		0.914
(1.00) 		0.588
(0.892) 		0.869
(1.00) 		0.6
(0.903) 		0.352
(0.68) 		0.631
(0.926) 		0.0149
(0.121) 		0.644
(0.931) 		0.604
(0.905)
AP3B1 12 (2%) 477 0.0607
(0.268) 		0.305
(0.635) 		0.0816
(0.309) 		0.328
(0.656) 		1
(1.00) 		0.886
(1.00) 		0.521
(0.843) 		0.319
(0.648) 		0.304
(0.634) 		0.0492
(0.237)
RRP9 14 (3%) 475 0.699
(0.971) 		0.244
(0.569) 		0.399
(0.724) 		0.205
(0.511) 		0.426
(0.753) 		0.725
(0.993) 		0.897
(1.00) 		0.0285
(0.172) 		0.684
(0.963) 		0.147
(0.429)
OR4N5 3 (1%) 486 0.416
(0.744) 		0.515
(0.836) 		0.337
(0.665) 		0.3
(0.629) 		0.0489
(0.236) 		0.127
(0.395) 		0.257
(0.579) 		0.649
(0.935)
STOX2 10 (2%) 479 0.277
(0.604) 		0.0467
(0.23) 		0.132
(0.406) 		0.807
(1.00) 		0.109
(0.365) 		0.65
(0.937) 		0.285
(0.614) 		0.109
(0.366)
GABRB2 10 (2%) 479 0.029
(0.174) 		0.39
(0.716) 		0.152
(0.438) 		0.515
(0.836) 		0.382
(0.711) 		0.4
(0.726) 		0.285
(0.613) 		0.207
(0.514) 		0.594
(0.898) 		0.238
(0.561) 		0.0848
(0.315) 		1
(1.00)
ZNF274 7 (1%) 482 0.72
(0.988) 		0.329
(0.656) 		0.0293
(0.175) 		0.759
(1.00) 		0.193
(0.496) 		0.501
(0.827) 		0.67
(0.954) 		0.579
(0.884) 		0.872
(1.00) 		1
(1.00)
PRKRIR 12 (2%) 477 0.63
(0.926) 		0.788
(1.00) 		0.0509
(0.243) 		0.396
(0.721) 		0.173
(0.47) 		0.109
(0.365) 		0.082
(0.31) 		0.0261
(0.164) 		0.65
(0.937) 		0.341
(0.668)
LRIG1 15 (3%) 474 0.0509
(0.242) 		1
(1.00) 		0.202
(0.508) 		0.308
(0.637) 		0.476
(0.805) 		0.157
(0.445) 		0.236
(0.557) 		0.0454
(0.227) 		0.359
(0.687) 		0.0523
(0.247) 		0.0953
(0.338) 		0.672
(0.955)
RHOA 13 (3%) 476 0.628
(0.925) 		0.348
(0.676) 		0.124
(0.392) 		0.604
(0.905) 		1
(1.00) 		0.823
(1.00) 		0.743
(1.00) 		0.123
(0.389) 		0.844
(1.00) 		0.834
(1.00) 		0.27
(0.595) 		0.675
(0.956)
IQCD 13 (3%) 476 0.628
(0.925) 		1
(1.00) 		0.069
(0.283) 		0.367
(0.696) 		0.796
(1.00) 		0.43
(0.758) 		0.0752
(0.294) 		0.0811
(0.308) 		0.78
(1.00) 		0.41
(0.736) 		0.758
(1.00) 		0.52
(0.841)
PCBP1 15 (3%) 474 0.445
(0.772) 		0.388
(0.715) 		0.0563
(0.258) 		0.915
(1.00) 		0.831
(1.00) 		0.298
(0.627) 		0.319
(0.648) 		0.17
(0.466) 		0.4
(0.725) 		0.0843
(0.314) 		1
(1.00) 		0.87
(1.00)
RLIM 18 (4%) 471 0.785
(1.00) 		0.349
(0.677) 		0.424
(0.752) 		0.796
(1.00) 		0.804
(1.00) 		1
(1.00) 		0.385
(0.713) 		0.122
(0.388) 		0.161
(0.454) 		0.13
(0.403) 		0.762
(1.00) 		0.788
(1.00)
PTGDR 9 (2%) 480 0.424
(0.752) 		0.495
(0.822) 		0.173
(0.47) 		0.297
(0.626) 		0.967
(1.00) 		0.391
(0.716) 		0.475
(0.803) 		0.779
(1.00)
PRPS1 9 (2%) 480 0.526
(0.847) 		0.493
(0.819) 		0.423
(0.75) 		0.33
(0.658) 		0.26
(0.584) 		0.0848
(0.315) 		0.0818
(0.31) 		0.266
(0.592)
GPR174 10 (2%) 479 0.271
(0.597) 		0.253
(0.577) 		0.268
(0.594) 		0.714
(0.985) 		0.463
(0.789) 		0.239
(0.563) 		0.342
(0.669) 		0.225
(0.541) 		0.761
(1.00) 		0.737
(1.00) 		0.256
(0.578) 		0.564
(0.873)
HMG20A 15 (3%) 474 0.771
(1.00) 		0.511
(0.833) 		0.459
(0.786) 		0.0942
(0.336) 		0.94
(1.00) 		0.879
(1.00) 		0.281
(0.609) 		0.893
(1.00) 		0.98
(1.00) 		0.791
(1.00) 		0.255
(0.578) 		0.842
(1.00)
PDCD5 11 (2%) 478 0.122
(0.388) 		0.297
(0.626) 		0.321
(0.65) 		0.328
(0.656) 		0.292
(0.621) 		0.0561
(0.258) 		0.746
(1.00) 		0.865
(1.00) 		0.419
(0.747) 		0.842
(1.00)
PRB4 12 (2%) 477 0.426
(0.753) 		0.789
(1.00) 		0.694
(0.969) 		0.223
(0.537) 		0.42
(0.748) 		0.169
(0.464) 		0.179
(0.479) 		0.0612
(0.269) 		0.458
(0.784) 		0.472
(0.8) 		1
(1.00) 		0.544
(0.864)
PON3 14 (3%) 475 0.135
(0.411) 		0.936
(1.00) 		0.286
(0.615) 		0.396
(0.721) 		0.496
(0.822) 		0.183
(0.484) 		0.62
(0.918) 		0.137
(0.413) 		0.0557
(0.257) 		0.779
(1.00)
TAF7L 13 (3%) 476 0.154
(0.44) 		0.618
(0.916) 		0.246
(0.572) 		0.369
(0.698) 		0.511
(0.833) 		1
(1.00) 		0.163
(0.456) 		0.199
(0.503) 		0.208
(0.516) 		0.0624
(0.271) 		0.247
(0.572) 		0.381
(0.71)
NEUROD1 10 (2%) 479 0.064
(0.275) 		0.182
(0.483) 		0.163
(0.457) 		0.0679
(0.281) 		1
(1.00) 		0.839
(1.00) 		0.161
(0.454) 		0.494
(0.82) 		0.209
(0.517) 		0.4
(0.725)
KCNK1 11 (2%) 478 0.713
(0.984) 		0.915
(1.00) 		0.833
(1.00) 		1
(1.00) 		0.301
(0.63) 		0.0949
(0.338) 		0.163
(0.456) 		0.701
(0.973)
FAM134A 8 (2%) 481 0.787
(1.00) 		0.183
(0.484) 		0.163
(0.456) 		0.629
(0.925) 		0.197
(0.5) 		0.304
(0.634) 		0.151
(0.434) 		0.263
(0.588) 		0.351
(0.678) 		0.302
(0.631)
EIF4A2 12 (2%) 477 0.524
(0.845) 		0.45
(0.776) 		0.422
(0.749) 		0.147
(0.427) 		0.182
(0.483) 		0.786
(1.00) 		0.25
(0.576) 		0.412
(0.739) 		0.233
(0.553) 		0.733
(0.999) 		1
(1.00) 		1
(1.00)
CATSPER1 19 (4%) 470 0.134
(0.408) 		0.243
(0.568) 		0.323
(0.652) 		0.0836
(0.313) 		0.614
(0.914) 		0.305
(0.635) 		0.303
(0.633) 		0.208
(0.515) 		0.563
(0.873) 		0.203
(0.509) 		0.761
(1.00) 		0.488
(0.815)
SMAD3 19 (4%) 470 0.136
(0.412) 		0.597
(0.9) 		0.474
(0.802) 		0.794
(1.00) 		0.898
(1.00) 		0.173
(0.47) 		0.596
(0.899) 		0.639
(0.927) 		0.571
(0.878) 		0.302
(0.631)
DCBLD1 7 (1%) 482 0.514
(0.835) 		1
(1.00) 		0.236
(0.557) 		1
(1.00) 		0.0928
(0.333) 		0.321
(0.65) 		0.107
(0.362) 		0.156
(0.444) 		0.548
(0.866) 		0.375
(0.705)
EFTUD2 17 (3%) 472 0.491
(0.817) 		0.337
(0.665) 		0.166
(0.46) 		0.638
(0.927) 		0.868
(1.00) 		0.0623
(0.271) 		0.85
(1.00) 		0.101
(0.35) 		0.815
(1.00) 		0.597
(0.9) 		0.0841
(0.314) 		0.777
(1.00)
STBD1 7 (1%) 482 0.161
(0.454) 		0.737
(1.00) 		1
(1.00) 		0.496
(0.822) 		0.366
(0.695) 		0.178
(0.478) 		0.352
(0.679) 		0.357
(0.686)
C17ORF47 7 (1%) 482 0.0646
(0.275) 		1
(1.00) 		0.373
(0.704) 		0.26
(0.584) 		1
(1.00) 		0.886
(1.00) 		1
(1.00) 		0.107
(0.361) 		0.693
(0.969) 		0.457
(0.784)
CYP1B1 12 (2%) 477 0.0741
(0.292) 		0.833
(1.00) 		0.412
(0.739) 		1
(1.00) 		0.795
(1.00) 		0.921
(1.00) 		0.484
(0.812) 		0.089
(0.324) 		0.512
(0.834) 		0.681
(0.962) 		0.206
(0.512) 		0.194
(0.497)
ZNF222 11 (2%) 478 0.402
(0.727) 		0.68
(0.961) 		0.412
(0.739) 		0.634
(0.927) 		0.26
(0.584) 		0.111
(0.37) 		0.508
(0.832) 		0.555
(0.87) 		0.968
(1.00) 		0.199
(0.503)
C19ORF66 4 (1%) 485 0.121
(0.387) 		0.111
(0.369) 		0.306
(0.635) 		0.0732
(0.291) 		0.306
(0.636) 		0.141
(0.418)
INPP1 8 (2%) 481 0.256
(0.578) 		0.594
(0.898) 		1
(1.00) 		1
(1.00) 		0.166
(0.46) 		0.145
(0.424) 		0.569
(0.876) 		0.241
(0.565)
TRIM24 20 (4%) 469 0.106
(0.359) 		0.337
(0.665) 		0.274
(0.6) 		0.618
(0.916) 		0.528
(0.848) 		0.311
(0.638) 		0.557
(0.87) 		0.398
(0.723) 		0.225
(0.542) 		0.0781
(0.301) 		0.269
(0.594) 		0.616
(0.915)
HM13 5 (1%) 484 0.0749
(0.294) 		0.153
(0.439) 		0.542
(0.862) 		0.102
(0.353) 		0.564
(0.873) 		0.398
(0.724) 		0.352
(0.68) 		0.16
(0.452)
RBM10 18 (4%) 471 0.197
(0.5) 		0.252
(0.577) 		0.555
(0.87) 		0.18
(0.479) 		0.161
(0.454) 		0.307
(0.636) 		0.285
(0.614) 		0.168
(0.462) 		0.376
(0.706) 		0.408
(0.734)
GTF2B 12 (2%) 477 0.0799
(0.304) 		0.508
(0.832) 		1
(1.00) 		0.91
(1.00) 		0.355
(0.684) 		0.131
(0.403) 		0.223
(0.538) 		0.783
(1.00)
THAP9 16 (3%) 473 0.0662
(0.277) 		0.34
(0.667) 		0.461
(0.788) 		0.503
(0.83) 		0.566
(0.874) 		0.287
(0.615) 		0.185
(0.485) 		0.189
(0.49) 		0.23
(0.55) 		0.158
(0.447)
TWISTNB 9 (2%) 480 0.605
(0.906) 		0.347
(0.674) 		0.794
(1.00) 		0.775
(1.00) 		0.693
(0.969) 		0.0644
(0.275) 		0.188
(0.488) 		0.329
(0.656) 		0.256
(0.578) 		1
(1.00)
ZAK 9 (2%) 480 0.0751
(0.294) 		0.556
(0.87) 		0.233
(0.554) 		0.382
(0.711) 		0.902
(1.00) 		0.221
(0.535) 		0.32
(0.649) 		0.0996
(0.347) 		0.755
(1.00) 		0.351
(0.678)
NOTCH2NL 6 (1%) 483 0.15
(0.434) 		0.831
(1.00) 		0.444
(0.771) 		0.664
(0.949) 		0.24
(0.563) 		0.38
(0.71) 		0.931
(1.00) 		0.887
(1.00)
CCDC18 13 (3%) 476 0.0738
(0.292) 		1
(1.00) 		0.569
(0.876) 		0.638
(0.927) 		0.26
(0.583) 		0.294
(0.623) 		0.45
(0.776) 		0.0931
(0.334) 		0.516
(0.838) 		0.2
(0.505)
OR5B2 15 (3%) 474 0.554
(0.87) 		0.228
(0.546) 		0.575
(0.881) 		0.212
(0.521) 		0.405
(0.73) 		0.0555
(0.257) 		0.418
(0.746) 		0.073
(0.291) 		0.567
(0.875) 		0.227
(0.544)
OR11G2 6 (1%) 483 0.906
(1.00) 		0.0716
(0.289) 		1
(1.00) 		0.861
(1.00) 		0.371
(0.701) 		0.0519
(0.246) 		0.634
(0.927) 		0.66
(0.946)
USP25 23 (5%) 466 0.407
(0.733) 		0.178
(0.478) 		0.431
(0.759) 		0.661
(0.947) 		0.643
(0.93) 		0.318
(0.647) 		0.277
(0.604) 		0.0507
(0.242) 		0.122
(0.388) 		0.249
(0.575) 		0.626
(0.924) 		0.521
(0.842)
TOPORS 22 (4%) 467 0.091
(0.329) 		0.319
(0.648) 		0.621
(0.92) 		0.812
(1.00) 		0.435
(0.762) 		0.219
(0.532) 		0.392
(0.717) 		0.117
(0.38) 		0.0821
(0.31) 		0.26
(0.584) 		0.347
(0.675) 		0.157
(0.446)
MMAA 12 (2%) 477 0.193
(0.496) 		0.349
(0.677) 		0.265
(0.591) 		0.399
(0.724) 		0.677
(0.958) 		0.465
(0.792) 		0.0601
(0.268) 		0.328
(0.656) 		0.391
(0.716) 		0.627
(0.925) 		0.907
(1.00) 		0.869
(1.00)
ZNF630 9 (2%) 480 0.064
(0.275) 		1
(1.00) 		0.747
(1.00) 		1
(1.00) 		0.437
(0.764) 		0.886
(1.00) 		0.44
(0.767) 		0.932
(1.00) 		0.457
(0.784) 		0.605
(0.906)
TRIM13 8 (2%) 481 0.443
(0.77) 		0.179
(0.479) 		0.316
(0.645) 		1
(1.00) 		0.295
(0.623) 		0.593
(0.897) 		0.358
(0.687) 		0.0518
(0.245) 		0.34
(0.667) 		0.223
(0.537)
GPX6 10 (2%) 479 0.0645
(0.275) 		1
(1.00) 		0.487
(0.814) 		0.8
(1.00) 		0.696
(0.969) 		0.296
(0.625) 		0.895
(1.00) 		0.218
(0.53) 		0.937
(1.00) 		0.118
(0.383) 		0.205
(0.512) 		0.379
(0.709)
KPNA5 11 (2%) 478 0.89
(1.00) 		1
(1.00) 		0.275
(0.601) 		0.358
(0.687) 		0.694
(0.969) 		0.265
(0.591) 		0.302
(0.631) 		0.207
(0.513) 		0.279
(0.607) 		0.113
(0.373)
DUSP19 12 (2%) 477 0.223
(0.538) 		0.852
(1.00) 		0.141
(0.417) 		0.745
(1.00) 		0.229
(0.549) 		0.322
(0.65) 		0.172
(0.469) 		0.734
(1)
FUT10 7 (1%) 482 0.719
(0.988) 		1
(1.00) 		0.459
(0.786) 		0.85
(1.00) 		0.312
(0.64) 		0.306
(0.636) 		0.481
(0.809) 		0.449
(0.775)
GAB2 10 (2%) 479 0.235
(0.555) 		0.604
(0.905) 		0.32
(0.649) 		0.104
(0.357) 		0.394
(0.719) 		0.387
(0.714) 		0.534
(0.854) 		0.248
(0.574) 		0.908
(1.00) 		0.27
(0.595)
COX15 7 (1%) 482 0.065
(0.276) 		0.184
(0.485) 		0.106
(0.36) 		0.32
(0.649) 		0.616
(0.915) 		1
(1.00) 		0.952
(1.00) 		0.176
(0.475) 		1
(1.00) 		0.506
(0.832)
AURKA 7 (1%) 482 0.619
(0.918) 		0.74
(1.00) 		0.265
(0.591) 		1
(1.00) 		0.253
(0.577) 		0.241
(0.565) 		0.398
(0.723) 		0.0564
(0.258) 		0.111
(0.369) 		0.563
(0.873)
RBM7 11 (2%) 478 0.687
(0.965) 		1
(1.00) 		0.123
(0.389) 		0.402
(0.728) 		0.253
(0.577) 		0.24
(0.563) 		0.358
(0.687) 		0.736
(1.00) 		0.704
(0.976) 		0.377
(0.707)
BRE 12 (2%) 477 0.275
(0.601) 		0.183
(0.484) 		0.0857
(0.317) 		0.0561
(0.258) 		0.327
(0.656) 		0.782
(1.00) 		0.0944
(0.337) 		0.328
(0.656) 		0.106
(0.359) 		0.091
(0.329) 		0.258
(0.581) 		0.695
(0.969)
MIER1 8 (2%) 481 0.549
(0.866) 		0.382
(0.711) 		0.818
(1.00) 		0.158
(0.449) 		0.443
(0.77) 		0.115
(0.376) 		0.955
(1.00) 		0.33
(0.657)
SULT6B1 12 (2%) 477 0.0649
(0.276) 		0.788
(1.00) 		0.0757
(0.296) 		0.104
(0.357) 		0.858
(1.00) 		0.428
(0.756) 		0.976
(1.00) 		0.389
(0.716) 		0.95
(1.00) 		0.745
(1.00)
EXT1 20 (4%) 469 0.462
(0.788) 		0.074
(0.292) 		0.0978
(0.343) 		1
(1.00) 		0.581
(0.886) 		0.891
(1.00) 		0.786
(1.00) 		0.243
(0.567) 		0.291
(0.619) 		0.0762
(0.297) 		0.0971
(0.341) 		0.766
(1.00)
IGFBP7 5 (1%) 484 0.384
(0.712) 		0.688
(0.966) 		0.374
(0.704) 		0.717
(0.987) 		0.208
(0.515) 		0.144
(0.423) 		0.406
(0.731) 		0.786
(1.00)
TIFA 6 (1%) 483 0.814
(1.00) 		0.449
(0.775) 		1
(1.00) 		0.526
(0.847) 		0.391
(0.716) 		0.238
(0.561) 		0.149
(0.433) 		0.57
(0.877)
ZNF691 8 (2%) 481 0.591
(0.896) 		1
(1.00) 		0.631
(0.926) 		0.596
(0.899) 		0.63
(0.926) 		0.113
(0.372) 		0.156
(0.445) 		0.196
(0.499) 		0.136
(0.412) 		0.693
(0.969)
STX7 5 (1%) 484 0.0736
(0.292) 		0.555
(0.87) 		0.122
(0.388) 		0.057
(0.26) 		0.295
(0.624) 		0.283
(0.611) 		0.639
(0.927) 		0.432
(0.759) 		0.738
(1.00)
HDAC1 5 (1%) 484 0.538
(0.858) 		0.112
(0.371) 		0.543
(0.862) 		0.717
(0.987) 		0.175
(0.474) 		0.155
(0.442) 		0.743
(1.00) 		0.665
(0.95)
NOX5 5 (1%) 484 0.179
(0.479) 		0.203
(0.51) 		0.164
(0.458) 		0.402
(0.728) 		0.102
(0.353) 		0.127
(0.396) 		0.115
(0.377) 		0.158
(0.449)
GOLPH3L 6 (1%) 483 0.907
(1.00) 		1
(1.00) 		0.769
(1.00) 		0.578
(0.884) 		0.312
(0.639) 		0.0875
(0.32) 		1
(1.00) 		0.987
(1.00)
SP110 10 (2%) 479 0.648
(0.935) 		0.764
(1.00) 		0.695
(0.969) 		0.449
(0.775) 		0.13
(0.402) 		0.0796
(0.304) 		0.0764
(0.297) 		0.212
(0.521)
ADORA3 15 (3%) 474 0.889
(1.00) 		0.463
(0.79) 		0.763
(1.00) 		0.532
(0.852) 		0.0597
(0.267) 		0.228
(0.546) 		0.0511
(0.243) 		0.0749
(0.294) 		0.179
(0.478) 		0.305
(0.635) 		0.356
(0.685) 		0.94
(1.00)
OVGP1 17 (3%) 472 0.0642
(0.275) 		0.184
(0.485) 		0.219
(0.532) 		0.832
(1.00) 		0.834
(1.00) 		0.823
(1.00) 		0.791
(1.00) 		0.133
(0.407) 		0.0561
(0.258) 		0.115
(0.375) 		0.0888
(0.324) 		0.523
(0.844)
UVRAG 11 (2%) 478 0.281
(0.609) 		0.126
(0.394) 		0.534
(0.854) 		1
(1.00) 		0.0693
(0.284) 		0.108
(0.363) 		0.0737
(0.292) 		0.624
(0.922) 		0.206
(0.513) 		0.195
(0.498)
C1ORF59 10 (2%) 479 0.818
(1.00) 		0.399
(0.724) 		0.382
(0.711) 		0.895
(1.00) 		0.292
(0.621) 		0.531
(0.851) 		0.195
(0.498) 		0.185
(0.485) 		0.547
(0.865) 		0.601
(0.904)
ESCO2 14 (3%) 475 0.307
(0.636) 		0.231
(0.551) 		0.107
(0.361) 		0.178
(0.478) 		0.0542
(0.252) 		0.612
(0.912) 		0.517
(0.839) 		0.132
(0.405) 		0.211
(0.52) 		0.244
(0.569) 		1
(1.00) 		0.266
(0.592)
SLFN12L 8 (2%) 481 0.122
(0.388) 		0.187
(0.488) 		0.202
(0.508) 		0.0553
(0.256) 		0.14
(0.416) 		0.886
(1.00) 		0.544
(0.864) 		0.419
(0.747) 		0.761
(1.00) 		0.821
(1.00)
ZNF473 16 (3%) 473 0.136
(0.412) 		0.337
(0.665) 		0.186
(0.487) 		0.369
(0.699) 		0.295
(0.624) 		0.934
(1.00) 		0.927
(1.00) 		0.689
(0.967) 		0.869
(1.00) 		0.378
(0.707) 		0.144
(0.424) 		0.428
(0.755)
HFE2 10 (2%) 479 0.526
(0.847) 		0.448
(0.774) 		0.695
(0.969) 		0.108
(0.363) 		0.627
(0.925) 		0.305
(0.635) 		0.881
(1.00) 		0.589
(0.893)
DDX3X 10 (2%) 479 0.153
(0.438) 		0.495
(0.821) 		0.876
(1.00) 		0.493
(0.819) 		0.486
(0.813) 		0.143
(0.422) 		0.759
(1.00) 		0.464
(0.79)
PPP1R12B 15 (3%) 474 0.448
(0.775) 		0.881
(1.00) 		0.599
(0.902) 		0.127
(0.396) 		0.488
(0.815) 		0.693
(0.969) 		0.747
(1.00) 		0.354
(0.682) 		0.81
(1.00) 		0.9
(1.00)
EAPP 6 (1%) 483 0.482
(0.81) 		0.642
(0.929) 		0.849
(1.00) 		0.341
(0.668) 		0.315
(0.643) 		0.156
(0.445) 		0.509
(0.832) 		0.17
(0.467)
FAAH2 14 (3%) 475 0.869
(1.00) 		0.0885
(0.323) 		0.369
(0.698) 		0.199
(0.503) 		0.0627
(0.272) 		0.0698
(0.285) 		0.334
(0.662) 		0.51
(0.833) 		0.0882
(0.322) 		0.0969
(0.341) 		1
(1.00) 		0.693
(0.969)
NAP1L1 9 (2%) 480 0.247
(0.572) 		0.905
(1.00) 		0.142
(0.419) 		0.718
(0.987) 		0.254
(0.577) 		0.0858
(0.317) 		0.417
(0.745) 		0.875
(1.00)
AKR1C4 11 (2%) 478 0.74
(1.00) 		0.603
(0.905) 		0.874
(1.00) 		0.579
(0.885) 		0.372
(0.702) 		0.217
(0.529) 		0.303
(0.633) 		0.336
(0.663) 		0.865
(1.00) 		0.822
(1.00)
E2F6 4 (1%) 485 0.295
(0.624) 		0.0716
(0.289) 		0.454
(0.781) 		0.588
(0.892) 		0.204
(0.511) 		0.157
(0.446) 		0.186
(0.487) 		0.611
(0.912) 		1
(1.00) 		1
(1.00)
GPR61 12 (2%) 477 0.28
(0.608) 		1
(1.00) 		0.739
(1.00) 		0.497
(0.823) 		0.0859
(0.317) 		0.74
(1.00) 		0.427
(0.754) 		0.18
(0.479) 		0.396
(0.721) 		0.654
(0.941) 		0.347
(0.675) 		0.281
(0.609)
OLR1 10 (2%) 479 1
(1.00) 		0.819
(1.00) 		0.831
(1.00) 		0.365
(0.694) 		0.824
(1.00) 		0.369
(0.698) 		0.761
(1.00) 		0.473
(0.801) 		0.36
(0.688) 		1
(1.00)
HIST1H1C 4 (1%) 485 0.121
(0.387) 		0.777
(1.00) 		0.249
(0.576) 		0.0821
(0.31) 		0.761
(1.00) 		0.297
(0.627) 		0.479
(0.807) 		0.495
(0.821)
RAE1 8 (2%) 481 0.371
(0.701) 		0.557
(0.87) 		0.393
(0.718) 		0.133
(0.407) 		0.534
(0.854) 		0.42
(0.747) 		1
(1.00) 		0.44
(0.767) 		0.526
(0.847) 		0.476
(0.805)
BFAR 9 (2%) 480 0.458
(0.785) 		0.495
(0.821) 		0.0777
(0.3) 		1
(1.00) 		0.391
(0.716) 		0.0972
(0.342) 		0.504
(0.831) 		0.074
(0.292)
TAPBP 5 (1%) 484 0.403
(0.729) 		0.178
(0.477) 		0.79
(1.00) 		0.83
(1.00) 		0.403
(0.729) 		0.426
(0.753) 		0.586
(0.891) 		0.587
(0.891) 		0.387
(0.714)
MSH4 15 (3%) 474 0.404
(0.73) 		0.682
(0.962) 		0.381
(0.71) 		0.34
(0.667) 		0.659
(0.945) 		0.639
(0.927) 		0.376
(0.706) 		0.647
(0.934) 		0.912
(1.00) 		0.357
(0.686) 		0.628
(0.925) 		0.0614
(0.269)
NCOA3 17 (3%) 472 0.0611
(0.269) 		0.244
(0.569) 		0.201
(0.507) 		0.921
(1.00) 		0.878
(1.00) 		0.366
(0.695) 		0.772
(1.00) 		0.0609
(0.268) 		0.948
(1.00) 		0.144
(0.423)
MYL1 8 (2%) 481 0.146
(0.426) 		0.267
(0.593) 		0.875
(1.00) 		0.413
(0.74) 		0.068
(0.281) 		0.154
(0.44) 		0.0686
(0.282) 		0.764
(1.00)
CEPT1 6 (1%) 483 0.0925
(0.332) 		0.329
(0.656) 		0.138
(0.414) 		0.507
(0.832) 		0.282
(0.611) 		0.0562
(0.258) 		0.674
(0.955) 		0.139
(0.415) 		0.0595
(0.267) 		0.694
(0.969)
TNFRSF9 10 (2%) 479 0.167
(0.461) 		1
(1.00) 		0.42
(0.748) 		0.636
(0.927) 		0.783
(1.00) 		0.247
(0.572) 		0.701
(0.973) 		0.847
(1.00)
RBPMS 4 (1%) 485 0.339
(0.666) 		0.514
(0.836) 		1
(1.00) 		0.529
(0.849) 		0.761
(1.00) 		0.392
(0.717) 		1
(1.00) 		0.861
(1.00)
C11ORF57 11 (2%) 478 0.221
(0.535) 		0.739
(1.00) 		0.168
(0.462) 		0.253
(0.577) 		0.319
(0.647) 		0.915
(1.00) 		0.169
(0.464) 		0.181
(0.482) 		0.411
(0.737) 		0.168
(0.463)
UBA3 7 (1%) 482 0.118
(0.383) 		1
(1.00) 		0.101
(0.35) 		0.329
(0.656) 		0.581
(0.886) 		0.0889
(0.324) 		0.441
(0.768) 		0.788
(1.00) 		0.903
(1.00) 		0.49
(0.816)
ATP5J2 5 (1%) 484 0.638
(0.927) 		0.833
(1.00) 		0.685
(0.964) 		1
(1.00) 		1
(1.00) 		0.955
(1.00) 		0.799
(1.00) 		1
(1.00)
ADH1B 10 (2%) 479 0.628
(0.925) 		1
(1.00) 		0.277
(0.604) 		0.094
(0.336) 		0.795
(1.00) 		0.887
(1.00) 		0.545
(0.864) 		0.205
(0.512) 		0.235
(0.555) 		0.0859
(0.317)
PARP12 11 (2%) 478 0.23
(0.55) 		0.251
(0.577) 		0.74
(1.00) 		0.129
(0.399) 		0.311
(0.638) 		0.253
(0.577) 		0.493
(0.82) 		0.463
(0.789) 		0.22
(0.534) 		0.326
(0.656) 		0.0856
(0.316) 		0.695
(0.969)
OR2V2 6 (1%) 483 0.906
(1.00) 		0.877
(1.00) 		0.874
(1.00) 		0.76
(1.00) 		0.436
(0.763) 		0.0852
(0.316) 		0.182
(0.483) 		0.809
(1.00) 		0.209
(0.516) 		1
(1.00)
PRAMEF12 7 (1%) 482 0.547
(0.865) 		1
(1.00) 		0.795
(1.00) 		0.162
(0.456) 		0.834
(1.00) 		0.188
(0.49) 		0.48
(0.808) 		0.176
(0.475) 		1
(1.00) 		0.175
(0.474)
EFCAB1 5 (1%) 484 0.154
(0.441) 		1
(1.00) 		0.637
(0.927) 		0.359
(0.687) 		0.671
(0.954) 		0.924
(1.00) 		0.823
(1.00) 		0.241
(0.565) 		0.886
(1.00)
ING1 12 (2%) 477 0.221
(0.535) 		0.738
(1.00) 		0.567
(0.875) 		0.0526
(0.248) 		1
(1.00) 		1
(1.00) 		0.234
(0.554) 		0.432
(0.76) 		0.314
(0.642) 		0.144
(0.423)
IVNS1ABP 14 (3%) 475 0.63
(0.926) 		0.789
(1.00) 		0.369
(0.698) 		1
(1.00) 		0.831
(1.00) 		0.822
(1.00) 		0.165
(0.459) 		0.0802
(0.305) 		0.333
(0.66) 		0.262
(0.587)
RFXAP 6 (1%) 483 0.401
(0.726) 		0.0556
(0.257) 		0.331
(0.658) 		0.336
(0.664) 		0.283
(0.611) 		0.345
(0.672) 		0.572
(0.878) 		0.245
(0.57)
SLC41A2 9 (2%) 480 0.244
(0.569) 		0.344
(0.671) 		0.176
(0.476) 		0.562
(0.873) 		0.502
(0.828) 		0.0829
(0.312) 		0.195
(0.498) 		0.472
(0.8)
VANGL1 13 (3%) 476 0.621
(0.919) 		0.852
(1.00) 		0.807
(1.00) 		1
(1.00) 		0.564
(0.873) 		0.515
(0.836) 		0.332
(0.66) 		0.356
(0.685) 		0.0814
(0.308) 		0.767
(1.00)
POLA1 14 (3%) 475 0.741
(1.00) 		0.698
(0.97) 		0.256
(0.578) 		0.594
(0.898) 		0.389
(0.716) 		0.284
(0.612) 		0.61
(0.911) 		0.389
(0.716) 		0.247
(0.573) 		0.607
(0.907)
CNTFR 10 (2%) 479 0.252
(0.577) 		0.906
(1.00) 		0.0707
(0.287) 		0.563
(0.873) 		0.542
(0.862) 		0.161
(0.454) 		0.285
(0.614) 		0.936
(1.00) 		0.135
(0.41) 		0.447
(0.773)
C5ORF22 11 (2%) 478 0.336
(0.664) 		0.836
(1.00) 		0.51
(0.832) 		0.912
(1.00) 		0.155
(0.442) 		0.255
(0.578) 		0.325
(0.655) 		0.133
(0.408)
OTX2 8 (2%) 481 0.165
(0.459) 		0.053
(0.249) 		1
(1.00) 		0.0885
(0.323) 		0.256
(0.578) 		0.0585
(0.264) 		0.707
(0.978) 		0.353
(0.681)
MAGEC1 33 (7%) 456 0.39
(0.716) 		0.353
(0.681) 		0.478
(0.807) 		0.24
(0.563) 		0.196
(0.498) 		0.925
(1.00) 		0.384
(0.712) 		0.184
(0.485) 		0.347
(0.674) 		0.191
(0.493) 		0.63
(0.926) 		0.0674
(0.279)
C14ORF118 10 (2%) 479 0.308
(0.637) 		0.453
(0.779) 		0.339
(0.667) 		0.878
(1.00) 		0.832
(1.00) 		0.406
(0.731) 		0.969
(1.00) 		0.498
(0.824) 		0.474
(0.802) 		0.242
(0.567)
SLC35A5 8 (2%) 481 0.531
(0.851) 		0.893
(1.00) 		0.614
(0.914) 		0.683
(0.963) 		0.444
(0.771) 		0.0714
(0.288) 		0.683
(0.963) 		0.976
(1.00)
PGM2 4 (1%) 485 1
(1.00) 		0.392
(0.717) 		0.686
(0.965) 		0.404
(0.729) 		0.141
(0.418) 		0.0807
(0.306) 		0.535
(0.854) 		0.197
(0.499)
STX16 7 (1%) 482 0.274
(0.6) 		0.254
(0.577) 		0.848
(1.00) 		0.154
(0.441) 		0.331
(0.658) 		0.76
(1.00) 		0.285
(0.613) 		0.787
(1.00) 		0.757
(1.00) 		0.41
(0.736)
NFATC3 14 (3%) 475 0.888
(1.00) 		0.119
(0.385) 		0.499
(0.826) 		0.665
(0.95) 		1
(1.00) 		0.57
(0.877) 		0.417
(0.745) 		0.649
(0.936) 		0.599
(0.902) 		0.0775
(0.3) 		0.871
(1.00) 		0.312
(0.64)
PAAF1 6 (1%) 483 0.734
(0.999) 		0.595
(0.898) 		0.383
(0.712) 		0.0543
(0.253) 		0.183
(0.484) 		0.433
(0.76) 		0.943
(1.00) 		0.584
(0.888)
C1QL3 4 (1%) 485 1
(1.00) 		0.466
(0.793) 		0.553
(0.87) 		0.829
(1.00) 		0.205
(0.512) 		0.0909
(0.328) 		0.0793
(0.303) 		0.155
(0.442)
LRRC6 4 (1%) 485 0.193
(0.497) 		0.294
(0.622) 		0.612
(0.912) 		0.298
(0.627) 		0.378
(0.707) 		0.279
(0.606) 		0.599
(0.902) 		0.0763
(0.297) 		0.556
(0.87) 		1
(1.00)
MRAS 4 (1%) 485 0.335
(0.663) 		1
(1.00) 		0.555
(0.87) 		0.252
(0.577) 		0.644
(0.93) 		0.487
(0.814) 		0.304
(0.633) 		0.315
(0.642)
OR51A4 8 (2%) 481 0.0644
(0.275) 		0.253
(0.577) 		0.163
(0.456) 		0.195
(0.498) 		1
(1.00) 		0.861
(1.00) 		0.0969
(0.341) 		0.269
(0.594) 		0.76
(1.00) 		0.234
(0.555)
RSPO2 21 (4%) 468 0.942
(1.00) 		0.509
(0.832) 		0.967
(1.00) 		0.269
(0.594) 		1
(1.00) 		0.887
(1.00) 		0.164
(0.457) 		0.397
(0.722) 		0.116
(0.378) 		0.541
(0.862) 		0.369
(0.698) 		0.281
(0.609)
LPAR6 8 (2%) 481 0.127
(0.397) 		0.68
(0.961) 		0.241
(0.565) 		0.667
(0.951) 		0.769
(1.00) 		0.113
(0.372) 		0.382
(0.711) 		0.799
(1.00)
TXNDC6 9 (2%) 480 0.154
(0.44) 		1
(1.00) 		0.639
(0.927) 		0.712
(0.983) 		0.904
(1.00) 		1
(1.00) 		0.678
(0.959) 		0.667
(0.951) 		0.282
(0.611) 		0.474
(0.802)
HERC5 21 (4%) 468 0.171
(0.467) 		0.88
(1.00) 		0.162
(0.455) 		0.796
(1.00) 		0.777
(1.00) 		0.666
(0.951) 		0.111
(0.369) 		0.407
(0.732) 		0.76
(1.00) 		0.448
(0.775) 		0.305
(0.634) 		0.447
(0.773)
BAG5 3 (1%) 486 0.278
(0.606) 		0.691
(0.968) 		0.392
(0.717) 		0.389
(0.715) 		0.123
(0.39)
MIPOL1 5 (1%) 484 0.269
(0.594) 		0.205
(0.511) 		1
(1.00) 		1
(1.00) 		0.0838
(0.313) 		0.21
(0.518) 		0.547
(0.865) 		0.745
(1.00)
CDH22 20 (4%) 469 0.569
(0.876) 		0.532
(0.852) 		0.592
(0.896) 		0.0777
(0.3) 		0.314
(0.642) 		0.369
(0.699) 		0.61
(0.91) 		0.657
(0.943) 		0.165
(0.459) 		0.806
(1.00) 		0.941
(1.00) 		0.0916
(0.33)
DCUN1D3 7 (1%) 482 0.85
(1.00) 		0.864
(1.00) 		0.704
(0.975) 		0.681
(0.962) 		0.834
(1.00) 		0.0741
(0.292) 		0.449
(0.775) 		0.0796
(0.304)
GPR115 22 (4%) 467 0.487
(0.814) 		0.242
(0.566) 		0.166
(0.46) 		0.529
(0.849) 		0.866
(1.00) 		0.456
(0.783) 		0.469
(0.796) 		0.524
(0.845) 		0.765
(1.00) 		0.343
(0.67) 		0.724
(0.992) 		0.921
(1.00)
RAB42 4 (1%) 485 0.122
(0.388) 		0.513
(0.835) 		0.338
(0.665) 		1
(1.00) 		0.3
(0.629) 		0.0999
(0.348) 		0.599
(0.902) 		0.283
(0.611)
SLC27A2 7 (1%) 482 0.119
(0.385) 		1
(1.00) 		0.327
(0.656) 		0.154
(0.44) 		0.547
(0.865) 		0.719
(0.988) 		0.911
(1.00) 		0.806
(1.00) 		0.902
(1.00) 		0.904
(1.00)
OR6C75 8 (2%) 481 0.165
(0.459) 		0.518
(0.84) 		0.306
(0.636) 		0.218
(0.532) 		0.558
(0.87) 		0.196
(0.498) 		0.636
(0.927) 		0.607
(0.908)
TRIM54 9 (2%) 480 0.422
(0.75) 		1
(1.00) 		0.115
(0.377) 		0.417
(0.745) 		0.0829
(0.312) 		0.485
(0.812) 		0.15
(0.434) 		0.294
(0.623) 		0.0839
(0.314) 		0.112
(0.372)
SGK3 10 (2%) 479 0.0749
(0.294) 		0.496
(0.823) 		0.173
(0.47) 		0.108
(0.363) 		0.344
(0.671) 		0.0865
(0.318) 		0.27
(0.595) 		0.425
(0.753)
ODAM 6 (1%) 483 0.37
(0.7) 		0.63
(0.926) 		1
(1.00) 		0.528
(0.848) 		0.586
(0.89) 		0.143
(0.42) 		0.0777
(0.3) 		0.103
(0.356)
RAB6C 5 (1%) 484 0.22
(0.535) 		1
(1.00) 		0.136
(0.412) 		0.0787
(0.302) 		0.0955
(0.338) 		0.274
(0.6)
PLEKHB2 6 (1%) 483 0.904
(1.00) 		0.739
(1.00) 		0.796
(1.00) 		0.593
(0.897) 		0.559
(0.871) 		0.0772
(0.3) 		0.243
(0.567) 		0.484
(0.812)
RALA 8 (2%) 481 0.394
(0.718) 		0.141
(0.418) 		0.303
(0.633) 		1
(1.00) 		0.925
(1.00) 		0.0714
(0.288) 		0.633
(0.927) 		0.714
(0.985)
FH 10 (2%) 479 0.628
(0.925) 		0.0773
(0.3) 		0.277
(0.604) 		0.639
(0.927) 		0.44
(0.767) 		0.27
(0.595) 		1
(1.00) 		0.506
(0.832) 		0.138
(0.414) 		0.841
(1.00)
H2AFJ 3 (1%) 486 0.417
(0.745) 		0.779
(1.00) 		0.0705
(0.286) 		0.127
(0.396) 		0.0674
(0.279) 		0.804
(1.00)
ZNF518B 14 (3%) 475 0.888
(1.00) 		0.79
(1.00) 		0.297
(0.626) 		0.636
(0.927) 		0.797
(1.00) 		0.613
(0.913) 		0.505
(0.832) 		0.107
(0.361) 		0.331
(0.658) 		0.511
(0.833) 		0.521
(0.842) 		0.38
(0.709)
APBB1IP 19 (4%) 470 0.255
(0.577) 		0.249
(0.576) 		0.244
(0.569) 		0.403
(0.728) 		0.178
(0.477) 		0.715
(0.985) 		0.59
(0.895) 		0.198
(0.5) 		0.105
(0.358) 		0.307
(0.637) 		0.692
(0.969) 		0.562
(0.873)
SLC39A2 10 (2%) 479 0.309
(0.637) 		0.176
(0.476) 		0.414
(0.741) 		0.0819
(0.31) 		0.733
(0.999) 		0.512
(0.834) 		1
(1.00) 		0.308
(0.637) 		0.863
(1.00) 		0.584
(0.888)
C14ORF28 5 (1%) 484 0.175
(0.475) 		0.513
(0.835) 		0.137
(0.413) 		0.505
(0.831) 		0.456
(0.783) 		0.293
(0.622) 		0.344
(0.671) 		0.421
(0.749)
MDH1 8 (2%) 481 0.869
(1.00) 		0.344
(0.672) 		0.383
(0.712) 		1
(1.00) 		0.309
(0.637) 		0.0775
(0.3) 		0.567
(0.875) 		0.128
(0.397) 		0.11
(0.369) 		0.843
(1.00)
KLF11 8 (2%) 481 0.755
(1.00) 		0.252
(0.577) 		0.636
(0.927) 		0.718
(0.987) 		0.559
(0.871) 		0.329
(0.656) 		0.269
(0.594) 		0.105
(0.359)
UGT1A7 8 (2%) 481 0.595
(0.898) 		0.877
(1.00) 		0.309
(0.637) 		1
(1.00) 		0.766
(1.00) 		0.0866
(0.318) 		0.864
(1.00) 		0.359
(0.688)
UST 11 (2%) 478 0.511
(0.833) 		1
(1.00) 		0.169
(0.464) 		0.509
(0.832) 		0.0515
(0.244) 		0.273
(0.599) 		0.298
(0.627) 		0.149
(0.431) 		0.93
(1.00) 		0.265
(0.591)
KRT19 4 (1%) 485 0.12
(0.386) 		0.683
(0.963) 		0.329
(0.656) 		0.34
(0.667) 		0.0961
(0.34) 		0.744
(1.00) 		0.0755
(0.295)
ZHX1 11 (2%) 478 0.412
(0.739) 		0.299
(0.628) 		0.186
(0.486) 		0.639
(0.927) 		0.526
(0.847) 		0.0858
(0.317) 		0.56
(0.871) 		0.345
(0.673) 		0.358
(0.687) 		1
(1.00)
ZNF658 14 (3%) 475 0.111
(0.37) 		0.595
(0.898) 		0.543
(0.862) 		0.569
(0.876) 		0.911
(1.00) 		1
(1.00) 		0.896
(1.00) 		0.476
(0.805) 		0.933
(1.00) 		0.508
(0.832) 		0.783
(1.00) 		0.449
(0.775)
E2F5 7 (1%) 482 0.108
(0.363) 		0.0741
(0.292) 		0.0782
(0.301) 		0.412
(0.739) 		0.494
(0.821) 		0.766
(1.00) 		0.725
(0.993) 		0.185
(0.485)
OR10J1 13 (3%) 476 0.0743
(0.293) 		0.0619
(0.27) 		0.358
(0.687) 		0.438
(0.765) 		0.512
(0.834) 		0.188
(0.489) 		0.277
(0.603) 		0.0554
(0.256) 		0.387
(0.714) 		0.663
(0.949) 		0.0594
(0.267) 		1
(1.00)
PAGE2 9 (2%) 480 0.12
(0.386) 		1
(1.00) 		0.718
(0.987) 		0.875
(1.00) 		0.705
(0.976) 		0.365
(0.694) 		0.588
(0.893) 		0.571
(0.878) 		0.805
(1.00) 		0.713
(0.983) 		0.221
(0.535) 		0.546
(0.865)
GRINA 4 (1%) 485 0.738
(1.00) 		0.691
(0.968) 		1
(1.00) 		0.0608
(0.268) 		0.417
(0.745) 		0.145
(0.424) 		0.536
(0.856) 		0.671
(0.954)
FRMD4B 8 (2%) 481 0.165
(0.459) 		0.682
(0.962) 		0.905
(1.00) 		0.511
(0.834) 		0.0814
(0.308) 		0.265
(0.59) 		0.22
(0.534) 		0.931
(1.00)
MYBPH 7 (1%) 482 0.612
(0.912) 		0.23
(0.55) 		0.265
(0.59) 		0.11
(0.369) 		0.581
(0.886) 		0.0887
(0.323) 		0.138
(0.414) 		0.394
(0.719) 		0.436
(0.764) 		0.0912
(0.329)
MLLT1 6 (1%) 483 0.625
(0.923) 		0.863
(1.00) 		0.658
(0.945) 		0.243
(0.568) 		0.298
(0.627) 		0.436
(0.763) 		0.45
(0.776) 		0.554
(0.87)
IFNAR1 7 (1%) 482 0.439
(0.766) 		0.555
(0.87) 		0.73
(0.997) 		1
(1.00) 		0.139
(0.415) 		0.719
(0.987) 		1
(1.00) 		0.458
(0.784) 		0.793
(1.00) 		0.12
(0.385)
CHRNA1 12 (2%) 477 1
(1.00) 		1
(1.00) 		0.717
(0.987) 		0.547
(0.865) 		0.174
(0.473) 		0.496
(0.822) 		0.451
(0.777) 		0.247
(0.573) 		0.579
(0.885) 		0.17
(0.466) 		0.485
(0.812) 		0.38
(0.709)
SLC16A1 10 (2%) 479 0.121
(0.387) 		0.185
(0.485) 		0.276
(0.603) 		0.126
(0.395) 		0.816
(1.00) 		0.723
(0.991) 		0.0943
(0.336) 		0.228
(0.547) 		0.636
(0.927) 		0.145
(0.424)
MRPL13 8 (2%) 481 0.207
(0.514) 		0.326
(0.655) 		0.0785
(0.302) 		0.76
(1.00) 		0.594
(0.898) 		0.148
(0.43) 		0.846
(1.00) 		0.895
(1.00)
CD3D 5 (1%) 484 0.49
(0.816) 		0.833
(1.00) 		1
(1.00) 		0.718
(0.987) 		0.602
(0.905) 		0.398
(0.723) 		0.056
(0.257) 		0.0631
(0.273)
CCDC69 5 (1%) 484 0.223
(0.538) 		1
(1.00) 		0.635
(0.927) 		1
(1.00) 		0.601
(0.904) 		0.309
(0.637) 		1
(1.00) 		0.216
(0.527)
AGTPBP1 21 (4%) 468 0.563
(0.873) 		0.832
(1.00) 		0.274
(0.6) 		0.106
(0.359) 		0.955
(1.00) 		0.255
(0.577) 		0.153
(0.439) 		0.27
(0.595) 		0.35
(0.677) 		0.681
(0.962) 		0.343
(0.67) 		0.756
(1.00)
PCOLCE2 15 (3%) 474 0.387
(0.714) 		0.432
(0.76) 		0.423
(0.75) 		0.665
(0.951) 		0.72
(0.988) 		1
(1.00) 		0.983
(1.00) 		0.671
(0.954) 		0.81
(1.00) 		0.549
(0.866) 		0.166
(0.46) 		0.0862
(0.317)
DNASE1L3 8 (2%) 481 0.313
(0.64) 		0.327
(0.656) 		0.457
(0.784) 		0.504
(0.831) 		0.925
(1.00) 		0.68
(0.961) 		0.0623
(0.271) 		0.0842
(0.314)
FAM98B 5 (1%) 484 0.178
(0.478) 		1
(1.00) 		0.797
(1.00) 		0.59
(0.895) 		0.458
(0.784) 		0.397
(0.722) 		0.864
(1.00) 		0.179
(0.478)
DCTN5 6 (1%) 483 0.442
(0.769) 		0.384
(0.712) 		1
(1.00) 		0.492
(0.818) 		0.152
(0.438) 		0.161
(0.454) 		0.26
(0.584) 		0.658
(0.945)
SERPINB7 8 (2%) 481 0.164
(0.458) 		0.289
(0.617) 		0.114
(0.373) 		0.256
(0.578) 		0.559
(0.87) 		0.0558
(0.257) 		0.636
(0.927) 		0.784
(1.00) 		0.0652
(0.276) 		1
(1.00)
WDR5 6 (1%) 483 0.441
(0.768) 		0.327
(0.656) 		0.765
(1.00) 		0.412
(0.739) 		0.436
(0.763) 		0.0567
(0.259) 		0.186
(0.486) 		0.458
(0.784)
KRTAP5-3 4 (1%) 485 0.46
(0.787) 		1
(1.00) 		0.339
(0.666) 		0.299
(0.628) 		0.374
(0.704) 		0.0602
(0.268) 		0.342
(0.669) 		0.236
(0.557)
COCH 7 (1%) 482 0.285
(0.613) 		0.388
(0.715) 		1
(1.00) 		0.852
(1.00) 		0.568
(0.875) 		0.578
(0.884) 		0.384
(0.712) 		0.0599
(0.268)
TMTC4 15 (3%) 474 0.372
(0.702) 		0.555
(0.87) 		0.187
(0.488) 		0.74
(1.00) 		0.453
(0.779) 		0.395
(0.719) 		0.511
(0.834) 		0.197
(0.5) 		0.541
(0.862) 		0.212
(0.521) 		0.146
(0.427) 		0.95
(1.00)
TGIF1 11 (2%) 478 0.487
(0.814) 		0.0609
(0.268) 		0.281
(0.609) 		0.739
(1.00) 		0.243
(0.568) 		0.485
(0.812) 		0.772
(1.00) 		0.303
(0.632) 		0.826
(1.00) 		0.392
(0.717)
NCL 12 (2%) 477 0.715
(0.986) 		0.788
(1.00) 		1
(1.00) 		0.91
(1.00) 		0.659
(0.945) 		0.0534
(0.25) 		0.575
(0.881) 		0.511
(0.833) 		0.698
(0.97) 		0.868
(1.00)
RNF38 6 (1%) 483 0.529
(0.849) 		0.558
(0.87) 		0.849
(1.00) 		0.594
(0.898) 		0.348
(0.676) 		0.112
(0.372) 		0.31
(0.637) 		0.683
(0.963) 		0.78
(1.00) 		1
(1.00)
DNAJC16 11 (2%) 478 0.306
(0.635) 		1
(1.00) 		0.0639
(0.274) 		0.602
(0.905) 		0.717
(0.987) 		0.838
(1.00) 		0.508
(0.832) 		0.205
(0.512) 		0.873
(1.00) 		0.305
(0.634) 		0.193
(0.496) 		0.869
(1.00)
TMEM92 3 (1%) 486 0.276
(0.603) 		0.266
(0.591) 		0.097
(0.341) 		0.645
(0.931) 		0.0667
(0.278)
TAS2R1 5 (1%) 484 0.176
(0.475) 		0.111
(0.369) 		0.491
(0.817) 		0.385
(0.713) 		0.685
(0.963) 		0.678
(0.959)
ZNF334 21 (4%) 468 0.201
(0.506) 		0.31
(0.637) 		0.109
(0.367) 		0.0929
(0.333) 		0.143
(0.421) 		0.752
(1.00) 		0.218
(0.531) 		0.0668
(0.278) 		0.391
(0.716) 		0.0614
(0.269) 		0.305
(0.634) 		0.495
(0.821)
C1ORF35 5 (1%) 484 0.386
(0.714) 		0.388
(0.715) 		0.335
(0.663) 		0.422
(0.75) 		0.189
(0.49) 		0.171
(0.468) 		0.408
(0.733) 		0.691
(0.968)
PLK2 7 (1%) 482 0.122
(0.388) 		1
(1.00) 		0.0604
(0.268) 		0.32
(0.65) 		0.373
(0.703) 		0.719
(0.988) 		0.952
(1.00) 		0.36
(0.689) 		0.794
(1.00) 		0.156
(0.444)
CCT4 14 (3%) 475 0.231
(0.551) 		0.461
(0.787) 		0.171
(0.468) 		0.136
(0.411) 		0.175
(0.474) 		0.393
(0.718) 		0.46
(0.787) 		0.724
(0.992) 		0.571
(0.878) 		0.541
(0.861) 		0.0606
(0.268) 		0.377
(0.706)
SLC25A44 5 (1%) 484 1
(1.00) 		0.198
(0.5) 		0.682
(0.962) 		0.83
(1.00) 		0.729
(0.997) 		0.485
(0.812) 		0.304
(0.633) 		0.961
(1.00)
PGAP3 8 (2%) 481 0.631
(0.926) 		0.183
(0.484) 		0.129
(0.399) 		1
(1.00) 		1
(1.00) 		0.415
(0.742) 		0.559
(0.87) 		0.217
(0.528) 		0.379
(0.709) 		0.489
(0.816) 		0.193
(0.496) 		0.272
(0.598)
FAM119A 6 (1%) 483 0.0657
(0.276) 		0.184
(0.485) 		0.184
(0.485) 		0.78
(1.00) 		0.796
(1.00) 		0.591
(0.895) 		1
(1.00) 		0.235
(0.555) 		0.866
(1.00) 		0.8
(1.00)
BCLAF1 22 (4%) 467 0.0842
(0.314) 		0.898
(1.00) 		0.146
(0.426) 		0.426
(0.753) 		0.447
(0.774) 		0.61
(0.911) 		0.62
(0.918) 		0.418
(0.745) 		0.152
(0.438) 		0.766
(1.00) 		0.821
(1.00) 		0.543
(0.863)
CTSZ 6 (1%) 483 0.484
(0.812) 		0.0711
(0.288) 		0.768
(1.00) 		0.113
(0.372) 		0.942
(1.00) 		0.693
(0.969) 		0.132
(0.405) 		0.563
(0.873)
GLDN 9 (2%) 480 0.438
(0.764) 		0.834
(1.00) 		0.126
(0.395) 		0.527
(0.848) 		0.33
(0.657) 		0.336
(0.664) 		0.904
(1.00) 		0.4
(0.726) 		0.928
(1.00) 		0.753
(1.00)
RARRES3 5 (1%) 484 0.323
(0.652) 		0.835
(1.00) 		0.542
(0.862) 		0.854
(1.00) 		0.567
(0.875) 		0.0854
(0.316) 		0.407
(0.732) 		0.801
(1.00)
CLDND1 10 (2%) 479 0.489
(0.816) 		0.113
(0.373) 		0.511
(0.833) 		1
(1.00) 		0.0898
(0.326) 		0.248
(0.574) 		0.376
(0.706) 		0.765
(1.00)
OR9Q2 14 (3%) 475 0.12
(0.386) 		0.462
(0.789) 		0.157
(0.447) 		0.212
(0.521) 		0.867
(1.00) 		0.743
(1.00) 		0.394
(0.719) 		0.282
(0.61) 		0.368
(0.697) 		0.377
(0.707)
TRIM31 5 (1%) 484 0.388
(0.715) 		1
(1.00) 		1
(1.00) 		0.718
(0.987) 		0.115
(0.375) 		0.38
(0.71) 		0.685
(0.964) 		0.64
(0.928)
NAA10 3 (1%) 486 0.663
(0.949) 		0.513
(0.835) 		0.266
(0.591) 		0.249
(0.575) 		0.743
(1.00) 		0.39
(0.716)
S100A2 8 (2%) 481 0.0854
(0.316) 		0.775
(1.00) 		0.295
(0.624) 		0.595
(0.898) 		0.768
(1.00) 		0.297
(0.626) 		0.51
(0.833) 		0.0828
(0.312) 		0.418
(0.746) 		0.313
(0.641)
C14ORF104 5 (1%) 484 0.0655
(0.276) 		0.788
(1.00) 		0.387
(0.714) 		0.797
(1.00) 		0.589
(0.893) 		0.873
(1.00) 		0.8
(1.00) 		0.931
(1.00) 		0.724
(0.992)
USF1 5 (1%) 484 0.176
(0.475) 		0.111
(0.369) 		0.634
(0.927) 		0.27
(0.595) 		0.487
(0.814) 		0.117
(0.38) 		0.509
(0.832) 		0.0584
(0.264)
HUS1 8 (2%) 481 0.59
(0.895) 		0.714
(0.984) 		0.532
(0.851) 		0.641
(0.928) 		0.542
(0.862) 		0.201
(0.506) 		0.686
(0.965) 		0.881
(1.00) 		0.0584
(0.264) 		0.383
(0.712)
ZNF280C 14 (3%) 475 0.122
(0.387) 		1
(1.00) 		0.397
(0.722) 		0.473
(0.802) 		0.109
(0.365) 		0.784
(1.00) 		0.852
(1.00) 		0.708
(0.979) 		0.924
(1.00) 		0.718
(0.987) 		0.666
(0.951) 		0.425
(0.753)
CIR1 10 (2%) 479 0.073
(0.291) 		0.232
(0.552) 		0.249
(0.575) 		0.681
(0.962) 		0.238
(0.56) 		0.294
(0.623) 		0.5
(0.827) 		0.099
(0.346) 		0.567
(0.875) 		0.436
(0.764) 		1
(1.00) 		0.197
(0.499)
HSP90AA1 9 (2%) 480 0.0643
(0.275) 		1
(1.00) 		0.389
(0.716) 		0.291
(0.62) 		0.382
(0.711) 		1
(1.00) 		0.968
(1.00) 		0.18
(0.48) 		0.892
(1.00) 		0.104
(0.357) 		0.484
(0.812) 		0.84
(1.00)
TMCO6 7 (1%) 482 0.065
(0.276) 		0.252
(0.577) 		0.061
(0.269) 		0.322
(0.651) 		0.632
(0.927) 		0.342
(0.669) 		0.952
(1.00) 		0.0575
(0.261) 		0.903
(1.00) 		0.16
(0.452)
FGB 6 (1%) 483 0.528
(0.848) 		0.259
(0.583) 		0.506
(0.832) 		0.291
(0.619) 		0.844
(1.00) 		0.207
(0.514) 		0.885
(1.00) 		0.742
(1.00)
DPAGT1 8 (2%) 481 0.593
(0.897) 		1
(1.00) 		0.306
(0.635) 		0.773
(1.00) 		0.696
(0.969) 		0.452
(0.778) 		0.205
(0.512) 		0.322
(0.65)
OR4B1 6 (1%) 483 0.0944
(0.337) 		0.556
(0.87) 		0.456
(0.783) 		0.504
(0.83) 		0.241
(0.565) 		0.191
(0.493) 		0.54
(0.861) 		0.539
(0.86)
C16ORF45 6 (1%) 483 0.193
(0.496) 		1
(1.00) 		0.627
(0.925) 		0.513
(0.835) 		0.455
(0.782) 		0.42
(0.748) 		0.509
(0.832) 		0.496
(0.822) 		0.292
(0.62) 		0.818
(1.00)
ICA1 7 (1%) 482 0.718
(0.987) 		0.864
(1.00) 		0.374
(0.704) 		0.718
(0.987) 		0.254
(0.577) 		0.302
(0.631) 		0.479
(0.808) 		0.605
(0.906)
AGTR2 17 (3%) 472 0.446
(0.773) 		0.244
(0.569) 		0.0772
(0.3) 		0.177
(0.477) 		0.521
(0.842) 		0.538
(0.858) 		0.559
(0.871) 		0.487
(0.814) 		0.351
(0.679) 		0.487
(0.814) 		0.136
(0.412) 		1
(1.00)
COL4A6 22 (4%) 467 0.343
(0.67) 		0.199
(0.503) 		0.187
(0.488) 		0.398
(0.723) 		0.0515
(0.245) 		0.0801
(0.305) 		0.0719
(0.289) 		0.392
(0.717) 		0.0858
(0.317) 		0.478
(0.806) 		0.644
(0.93) 		0.868
(1.00)
HEATR3 10 (2%) 479 0.19
(0.492) 		1
(1.00) 		0.277
(0.604) 		0.206
(0.513) 		0.831
(1.00) 		0.822
(1.00) 		0.519
(0.84) 		0.177
(0.477) 		0.655
(0.942) 		0.185
(0.485)
LYG1 6 (1%) 483 0.182
(0.483) 		0.512
(0.834) 		0.795
(1.00) 		0.586
(0.891) 		0.507
(0.832) 		0.268
(0.593) 		0.784
(1.00) 		0.438
(0.765)
DEK 6 (1%) 483 0.442
(0.769) 		0.866
(1.00) 		0.0786
(0.302) 		0.336
(0.664) 		0.586
(0.89) 		0.248
(0.574) 		0.106
(0.36) 		0.324
(0.654)
HAUS1 6 (1%) 483 0.0947
(0.337) 		0.261
(0.584) 		0.444
(0.771) 		0.0673
(0.279) 		0.942
(1.00) 		0.313
(0.641) 		0.35
(0.678) 		0.738
(1.00)
DBF4B 7 (1%) 482 0.121
(0.387) 		0.462
(0.788) 		0.105
(0.359) 		0.832
(1.00) 		0.445
(0.772) 		1
(1.00) 		0.872
(1.00) 		0.642
(0.929) 		0.28
(0.608) 		0.286
(0.614)
PLA2G15 6 (1%) 483 0.291
(0.62) 		0.152
(0.438) 		0.24
(0.564) 		0.76
(1.00) 		0.844
(1.00) 		0.201
(0.507) 		0.192
(0.495) 		0.654
(0.94) 		0.872
(1.00) 		0.84
(1.00)
MR1 7 (1%) 482 0.285
(0.613) 		0.164
(0.457) 		1
(1.00) 		0.579
(0.884) 		0.288
(0.616) 		0.233
(0.553) 		0.127
(0.396) 		0.698
(0.971) 		0.782
(1.00) 		1
(1.00)
FAM155B 8 (2%) 481 0.849
(1.00) 		0.139
(0.415) 		0.764
(1.00) 		0.863
(1.00) 		0.258
(0.58) 		0.329
(0.656) 		0.49
(0.816) 		0.915
(1.00)
CALCOCO2 8 (2%) 481 0.756
(1.00) 		0.878
(1.00) 		0.704
(0.975) 		1
(1.00) 		0.652
(0.939) 		0.507
(0.832) 		0.844
(1.00) 		0.646
(0.933)
IKBKE 8 (2%) 481 0.204
(0.511) 		0.133
(0.407) 		0.345
(0.673) 		0.424
(0.751) 		0.429
(0.756) 		0.192
(0.495) 		1
(1.00) 		0.329
(0.656) 		0.626
(0.924) 		0.0857
(0.317)
NFKBIE 4 (1%) 485 0.734
(0.999) 		0.2
(0.504) 		0.552
(0.869) 		0.529
(0.849) 		0.552
(0.869) 		0.39
(0.716) 		0.663
(0.949) 		0.162
(0.455)
RRM2B 5 (1%) 484 0.177
(0.477) 		0.739
(1.00) 		0.296
(0.626) 		0.595
(0.898) 		0.775
(1.00) 		0.0718
(0.289) 		0.634
(0.927) 		0.15
(0.433)
KRTAP20-1 3 (1%) 486 0.177
(0.477) 		1
(1.00) 		0.121
(0.387) 		0.114
(0.375) 		0.148
(0.43) 		0.0992
(0.346)
SPAG7 3 (1%) 486 0.663
(0.949) 		0.641
(0.928) 		0.453
(0.779) 		0.59
(0.894) 		0.12
(0.386) 		0.149
(0.432) 		0.0658
(0.276) 		0.804
(1.00)
WDR75 8 (2%) 481 0.179
(0.479) 		0.0896
(0.326) 		0.113
(0.372) 		0.111
(0.369) 		0.285
(0.613) 		1
(1.00) 		0.39
(0.716) 		0.708
(0.979) 		0.604
(0.905) 		0.88
(1.00)
NFKBIB 5 (1%) 484 0.71
(0.982) 		0.689
(0.966) 		0.361
(0.689) 		0.67
(0.954) 		0.776
(1.00) 		0.428
(0.755) 		0.232
(0.552) 		0.524
(0.846) 		0.703
(0.975) 		0.196
(0.498)
TTC24 7 (1%) 482 0.105
(0.359) 		0.632
(0.927) 		0.618
(0.917) 		0.221
(0.535) 		0.76
(1.00) 		0.0594
(0.267) 		0.662
(0.948) 		0.0981
(0.344) 		0.0607
(0.268) 		1
(1.00)
TRYX3 7 (1%) 482 0.0915
(0.33) 		0.74
(1.00) 		1
(1.00) 		1
(1.00) 		0.568
(0.876) 		0.0828
(0.311) 		0.268
(0.594) 		0.605
(0.906)
HMOX1 6 (1%) 483 0.906
(1.00) 		0.323
(0.653) 		0.731
(0.998) 		0.719
(0.987) 		0.315
(0.643) 		0.2
(0.505) 		0.884
(1.00) 		0.161
(0.453)
SLC16A2 8 (2%) 481 0.233
(0.552) 		0.253
(0.577) 		1
(1.00) 		0.738
(1.00) 		0.729
(0.996) 		1
(1.00) 		0.925
(1.00) 		0.551
(0.867) 		0.297
(0.626) 		0.304
(0.634) 		0.628
(0.925) 		0.838
(1.00)
GKN1 6 (1%) 483 0.0641
(0.275) 		0.0615
(0.269) 		0.339
(0.666) 		1
(1.00) 		1
(1.00) 		0.83
(1.00) 		1
(1.00) 		0.191
(0.493) 		0.481
(0.808) 		0.375
(0.704)
ZP2 14 (3%) 475 0.135
(0.411) 		0.0707
(0.287) 		0.266
(0.591) 		0.914
(1.00) 		0.525
(0.846) 		0.148
(0.429) 		0.913
(1.00) 		0.172
(0.469) 		0.961
(1.00) 		0.346
(0.674) 		0.628
(0.925) 		0.449
(0.775)
RAB38 5 (1%) 484 0.178
(0.478) 		0.467
(0.794) 		0.551
(0.868) 		0.328
(0.656) 		0.374
(0.704) 		0.154
(0.44) 		0.128
(0.398) 		0.247
(0.572)
OR7D4 10 (2%) 479 0.124
(0.392) 		0.743
(1.00) 		0.172
(0.469) 		0.668
(0.952) 		0.613
(0.913) 		0.106
(0.359) 		0.78
(1.00) 		0.321
(0.65) 		0.326
(0.656) 		0.11
(0.368)
NUPL2 11 (2%) 478 0.073
(0.291) 		0.553
(0.87) 		0.0503
(0.241) 		0.443
(0.77) 		0.603
(0.905) 		0.329
(0.656) 		0.973
(1.00) 		0.267
(0.592) 		0.893
(1.00) 		0.499
(0.826) 		0.699
(0.971) 		0.765
(1.00)
DTX3L 11 (2%) 478 0.119
(0.384) 		0.462
(0.788) 		0.0859
(0.317) 		1
(1.00) 		0.303
(0.633) 		0.684
(0.963) 		0.569
(0.876) 		0.0595
(0.267) 		0.71
(0.981) 		0.144
(0.423) 		0.135
(0.411) 		0.696
(0.969)
CREG2 5 (1%) 484 0.562
(0.873) 		1
(1.00) 		0.34
(0.667) 		0.298
(0.627) 		0.823
(1.00) 		0.487
(0.814) 		0.744
(1.00) 		0.105
(0.358)
GFRA4 3 (1%) 486 0.277
(0.603) 		1
(1.00) 		0.77
(1.00) 		0.694
(0.969) 		0.313
(0.64) 		1
(1.00) 		0.508
(0.832)
FGD4 10 (2%) 479 1
(1.00) 		0.457
(0.784) 		1
(1.00) 		1
(1.00) 		0.831
(1.00) 		1
(1.00) 		0.69
(0.967) 		0.558
(0.87) 		0.829
(1.00) 		0.974
(1.00) 		1
(1.00) 		0.319
(0.648)
HIST1H2BC 4 (1%) 485 0.341
(0.668) 		0.778
(1.00) 		0.554
(0.87) 		0.329
(0.656) 		0.762
(1.00) 		0.0954
(0.338) 		0.747
(1.00) 		0.432
(0.76)
CYP2C18 7 (1%) 482 0.716
(0.986) 		1
(1.00) 		1
(1.00) 		0.717
(0.987) 		0.833
(1.00) 		0.253
(0.577) 		0.481
(0.809) 		0.128
(0.398) 		0.872
(1.00) 		1
(1.00)
PSMD11 8 (2%) 481 0.164
(0.458) 		1
(1.00) 		0.278
(0.605) 		1
(1.00) 		0.927
(1.00) 		0.118
(0.382) 		0.353
(0.681) 		0.223
(0.537)
PPYR1 7 (1%) 482 0.788
(1.00) 		0.62
(0.918) 		0.283
(0.611) 		0.834
(1.00) 		0.24
(0.563) 		0.576
(0.882) 		0.874
(1.00) 		0.108
(0.364) 		1
(1.00) 		0.514
(0.835)
GCM2 14 (3%) 475 0.309
(0.637) 		0.68
(0.961) 		0.329
(0.656) 		0.125
(0.392) 		0.228
(0.547) 		0.503
(0.83) 		0.799
(1.00) 		0.148
(0.431) 		0.871
(1.00) 		0.887
(1.00) 		0.349
(0.677) 		0.0828
(0.312)
BUB1 16 (3%) 473 0.402
(0.728) 		1
(1.00) 		0.0895
(0.325) 		0.666
(0.951) 		0.343
(0.67) 		0.808
(1.00) 		0.342
(0.669) 		0.253
(0.577) 		0.389
(0.716) 		0.474
(0.802) 		0.207
(0.513) 		0.316
(0.644)
PAK2 11 (2%) 478 0.167
(0.462) 		0.438
(0.765) 		0.603
(0.905) 		0.766
(1.00) 		0.333
(0.66) 		0.126
(0.395) 		0.429
(0.756) 		0.165
(0.459)
MAOA 7 (1%) 482 0.629
(0.925) 		0.252
(0.577) 		0.848
(1.00) 		0.69
(0.967) 		0.617
(0.916) 		0.0846
(0.315) 		0.795
(1.00) 		0.753
(1.00) 		0.672
(0.955) 		0.562
(0.873)
FAM120C 8 (2%) 481 0.165
(0.459) 		0.878
(1.00) 		0.577
(0.884) 		0.0886
(0.323) 		0.23
(0.55) 		0.789
(1.00) 		0.206
(0.512) 		0.382
(0.711)
KIAA2022 39 (8%) 450 0.223
(0.537) 		0.217
(0.528) 		0.969
(1.00) 		0.965
(1.00) 		0.52
(0.841) 		0.262
(0.587) 		0.163
(0.457) 		0.485
(0.812) 		0.265
(0.591) 		0.351
(0.678) 		0.109
(0.367) 		0.149
(0.432)
SYNGR4 6 (1%) 483 0.442
(0.769) 		0.555
(0.87) 		0.0778
(0.3) 		0.76
(1.00) 		0.349
(0.677) 		0.2
(0.504) 		0.545
(0.865) 		0.104
(0.357)
OR2AE1 3 (1%) 486 0.665
(0.95) 		0.452
(0.778) 		0.768
(1.00) 		0.693
(0.969) 		0.56
(0.871) 		0.743
(1.00) 		0.718
(0.987)
SMAP1 3 (1%) 486 0.277
(0.604) 		0.693
(0.969) 		0.399
(0.724) 		1
(1.00) 		0.0663
(0.277)
EIF2AK3 12 (2%) 477 0.079
(0.302) 		0.192
(0.495) 		0.266
(0.591) 		0.439
(0.766) 		0.0714
(0.288) 		0.15
(0.433) 		0.0644
(0.275) 		0.245
(0.57) 		0.697
(0.97) 		0.43
(0.757)
SPOPL 10 (2%) 479 0.511
(0.833) 		0.906
(1.00) 		0.212
(0.521) 		0.499
(0.825) 		0.512
(0.834) 		0.129
(0.399) 		0.682
(0.962) 		0.433
(0.76)
FCRL4 13 (3%) 476 0.155
(0.442) 		1
(1.00) 		0.538
(0.858) 		0.478
(0.806) 		0.329
(0.656) 		0.337
(0.664) 		0.0511
(0.243) 		0.373
(0.703) 		0.845
(1.00) 		0.703
(0.974) 		0.265
(0.591) 		0.0834
(0.313)
OR8B12 4 (1%) 485 0.865
(1.00) 		1
(1.00) 		0.83
(1.00) 		0.528
(0.849) 		0.918
(1.00) 		0.511
(0.833) 		0.906
(1.00) 		0.486
(0.813)
LMOD1 13 (3%) 476 0.122
(0.388) 		0.184
(0.485) 		0.122
(0.388) 		1
(1.00) 		0.164
(0.458) 		1
(1.00) 		0.63
(0.926) 		0.0564
(0.258) 		0.491
(0.817) 		0.692
(0.969)
C2CD3 17 (3%) 472 0.0992
(0.346) 		0.659
(0.945) 		0.055
(0.255) 		0.402
(0.728) 		0.655
(0.942) 		0.745
(1.00) 		0.11
(0.369) 		0.368
(0.697) 		0.181
(0.482) 		0.102
(0.352)
SLC45A2 11 (2%) 478 0.276
(0.603) 		0.37
(0.699) 		0.61
(0.911) 		0.255
(0.577) 		0.305
(0.635) 		0.685
(0.964) 		0.161
(0.454) 		0.536
(0.855) 		0.54
(0.86) 		0.25
(0.576)
SLC44A1 10 (2%) 479 0.404
(0.729) 		0.834
(1.00) 		0.0582
(0.263) 		0.288
(0.617) 		0.894
(1.00) 		0.684
(0.963) 		0.171
(0.467) 		0.394
(0.719) 		0.637
(0.927) 		0.615
(0.914)
C14ORF105 3 (1%) 486 0.276
(0.603) 		0.521
(0.842) 		0.287
(0.615) 		0.55
(0.867) 		0.38
(0.709)
TMEM229B 4 (1%) 485 0.34
(0.667) 		1
(1.00) 		0.207
(0.514) 		0.439
(0.766) 		0.6
(0.904) 		0.197
(0.499)
NUDT15 4 (1%) 485 0.12
(0.386) 		0.795
(1.00) 		1
(1.00) 		0.761
(1.00) 		0.184
(0.484) 		1
(1.00) 		0.886
(1.00)
SYT14 15 (3%) 474 0.204
(0.51) 		0.548
(0.866) 		0.0536
(0.251) 		0.764
(1.00) 		1
(1.00) 		0.742
(1.00) 		0.67
(0.954) 		0.76
(1.00) 		1
(1.00) 		0.625
(0.923) 		0.699
(0.971) 		0.763
(1.00)
CD47 8 (2%) 481 0.756
(1.00) 		0.864
(1.00) 		0.615
(0.915) 		0.885
(1.00) 		0.927
(1.00) 		0.135
(0.411) 		0.635
(0.927) 		0.0517
(0.245)
RWDD4A 5 (1%) 484 0.386
(0.713) 		0.153
(0.439) 		1
(1.00) 		0.828
(1.00) 		0.226
(0.543) 		0.203
(0.509) 		0.438
(0.765) 		0.0992
(0.346) 		0.11
(0.369) 		0.843
(1.00)
PIGS 8 (2%) 481 0.0671
(0.279) 		0.385
(0.713) 		0.702
(0.974) 		1
(1.00) 		0.275
(0.602) 		0.0814
(0.308) 		0.569
(0.876) 		0.911
(1.00) 		0.0617
(0.27) 		0.45
(0.776)
OR4A16 15 (3%) 474 0.371
(0.7) 		1
(1.00) 		0.403
(0.729) 		0.339
(0.666) 		0.478
(0.806) 		0.934
(1.00) 		0.448
(0.775) 		0.633
(0.927) 		0.868
(1.00) 		0.601
(0.904) 		0.705
(0.976) 		0.562
(0.873)
IRF6 6 (1%) 483 0.44
(0.767) 		0.559
(0.871) 		0.767
(1.00) 		0.495
(0.821) 		0.509
(0.832) 		0.267
(0.593) 		0.865
(1.00) 		0.859
(1.00)
LGALS9C 6 (1%) 483 0.44
(0.767) 		1
(1.00) 		0.509
(0.832) 		1
(1.00) 		0.586
(0.891) 		0.0822
(0.31) 		0.447
(0.774) 		0.585
(0.889)
UPF3B 11 (2%) 478 0.0505
(0.241) 		0.833
(1.00) 		0.91
(1.00) 		0.891
(1.00) 		0.833
(1.00) 		0.912
(1.00) 		0.741
(1.00) 		0.986
(1.00) 		0.151
(0.436) 		0.166
(0.461)
XCL2 4 (1%) 485 0.734
(0.999) 		0.779
(1.00) 		0.795
(1.00) 		0.591
(0.895) 		0.303
(0.633) 		0.288
(0.616) 		0.535
(0.854) 		0.635
(0.927)
AASS 13 (3%) 476 0.137
(0.413) 		0.13
(0.402) 		0.123
(0.388) 		0.53
(0.85) 		0.763
(1.00) 		0.451
(0.777) 		0.311
(0.638) 		0.0523
(0.247) 		0.309
(0.637) 		0.247
(0.572)
SECISBP2 8 (2%) 481 0.477
(0.806) 		1
(1.00) 		0.617
(0.916) 		0.682
(0.962) 		0.69
(0.968) 		0.15
(0.433) 		0.635
(0.927) 		0.634
(0.927)
GPX8 3 (1%) 486 0.278
(0.605) 		0.794
(1.00) 		0.0825
(0.311) 		0.692
(0.969) 		0.412
(0.739) 		0.389
(0.716) 		0.66
(0.946)
TUBB4 7 (1%) 482 0.105
(0.359) 		0.197
(0.499) 		0.581
(0.886) 		0.246
(0.57) 		0.758
(1.00) 		0.181
(0.482) 		0.904
(1.00) 		0.134
(0.408)
HIPK3 8 (2%) 481 0.0661
(0.277) 		0.185
(0.485) 		0.333
(0.66) 		1
(1.00) 		0.281
(0.609) 		0.411
(0.737) 		0.671
(0.955) 		0.313
(0.64) 		0.914
(1.00) 		0.107
(0.361)
ENC1 13 (3%) 476 0.787
(1.00) 		1
(1.00) 		0.739
(1.00) 		0.612
(0.912) 		0.111
(0.369) 		0.428
(0.755) 		0.239
(0.562) 		0.0509
(0.242) 		0.144
(0.423) 		0.342
(0.669) 		0.871
(1.00) 		0.0612
(0.269)
WHAMM 6 (1%) 483 0.065
(0.276) 		0.462
(0.788) 		0.443
(0.771) 		1
(1.00) 		0.458
(0.785) 		0.273
(0.599) 		0.217
(0.529) 		0.867
(1.00) 		0.219
(0.532) 		0.382
(0.711)
ERN1 3 (1%) 486 0.823
(1.00) 		0.337
(0.665) 		0.423
(0.75) 		0.222
(0.536) 		0.475
(0.803) 		0.261
(0.584) 		0.638
(0.927)
CASP6 3 (1%) 486 0.277
(0.604) 		0.796
(1.00) 		0.589
(0.894) 		0.521
(0.843) 		0.582
(0.886)
WFDC5 5 (1%) 484 0.27
(0.595) 		0.835
(1.00) 		0.106
(0.36) 		0.213
(0.523) 		0.777
(1.00) 		0.397
(0.722) 		0.407
(0.733) 		0.765
(1.00)
MFSD4 6 (1%) 483 0.0937
(0.335) 		0.556
(0.87) 		1
(1.00) 		0.86
(1.00) 		0.889
(1.00) 		0.501
(0.827) 		0.605
(0.906) 		0.265
(0.59)
NAE1 9 (2%) 480 0.405
(0.73) 		0.178
(0.477) 		0.424
(0.752) 		0.0552
(0.256) 		0.313
(0.641) 		0.51
(0.833) 		0.422
(0.75) 		0.222
(0.537) 		0.0912
(0.329) 		0.121
(0.387)
DEFB129 5 (1%) 484 0.273
(0.599) 		0.254
(0.577) 		0.385
(0.713) 		0.166
(0.461) 		0.136
(0.412) 		0.263
(0.589) 		0.781
(1.00) 		0.743
(1.00) 		0.792
(1.00)
EFNB3 9 (2%) 480 0.487
(0.814) 		0.349
(0.677) 		0.232
(0.552) 		0.195
(0.498) 		0.795
(1.00) 		0.885
(1.00) 		0.0614
(0.269) 		0.513
(0.835) 		0.675
(0.956) 		0.915
(1.00)
LGALS9 5 (1%) 484 0.388
(0.715) 		0.778
(1.00) 		1
(1.00) 		0.342
(0.669) 		0.49
(0.816) 		0.0852
(0.316) 		0.931
(1.00) 		0.684
(0.963)
MSH5 8 (2%) 481 0.257
(0.58) 		0.637
(0.927) 		0.207
(0.513) 		0.778
(1.00) 		0.105
(0.359) 		0.423
(0.75) 		0.346
(0.674) 		0.264
(0.59) 		0.286
(0.614) 		0.232
(0.552)
OR5R1 14 (3%) 475 0.0872
(0.32) 		0.228
(0.548) 		0.542
(0.862) 		0.784
(1.00) 		0.319
(0.648) 		0.914
(1.00) 		0.586
(0.89) 		0.995
(1.00) 		0.871
(1.00) 		0.989
(1.00)
AP1G1 13 (3%) 476 0.0734
(0.291) 		0.557
(0.87) 		0.332
(0.659) 		0.764
(1.00) 		0.203
(0.51) 		0.135
(0.411) 		0.531
(0.851) 		0.223
(0.538) 		0.757
(1.00) 		0.621
(0.92)
PLEKHA3 8 (2%) 481 0.154
(0.44) 		0.789
(1.00) 		0.163
(0.457) 		0.384
(0.712) 		0.295
(0.624) 		0.595
(0.899) 		0.557
(0.87) 		0.206
(0.512) 		0.864
(1.00) 		0.306
(0.636)
PCNA 5 (1%) 484 0.89
(1.00) 		0.12
(0.385) 		0.874
(1.00) 		0.555
(0.87) 		1
(1.00) 		0.265
(0.591) 		0.712
(0.983) 		0.439
(0.766) 		0.232
(0.552)
TLX1NB 3 (1%) 486 1
(1.00) 		0.336
(0.664) 		1
(1.00) 		0.522
(0.843) 		1
(1.00) 		0.551
(0.868) 		0.377
(0.706)
ANAPC16 3 (1%) 486 0.822
(1.00) 		1
(1.00) 		1
(1.00) 		0.608
(0.909) 		0.367
(0.696)
AKAP7 6 (1%) 483 0.627
(0.925) 		1
(1.00) 		1
(1.00) 		0.717
(0.987) 		0.457
(0.784) 		0.577
(0.883) 		0.744
(1.00) 		0.301
(0.63)
MUM1L1 16 (3%) 473 0.179
(0.479) 		0.739
(1.00) 		0.513
(0.835) 		0.0731
(0.291) 		0.14
(0.416) 		0.541
(0.861) 		0.0723
(0.29) 		0.135
(0.411) 		0.933
(1.00) 		0.486
(0.813) 		1
(1.00) 		0.269
(0.594)
DNAJB11 9 (2%) 480 0.639
(0.927) 		0.571
(0.878) 		0.383
(0.712) 		0.289
(0.617) 		0.599
(0.902) 		0.11
(0.368) 		0.219
(0.533) 		0.307
(0.636) 		0.0598
(0.267) 		0.449
(0.775)
ARID4B 13 (3%) 476 0.31
(0.637) 		1
(1.00) 		0.0566
(0.259) 		0.116
(0.378) 		0.673
(0.955) 		0.162
(0.455) 		0.113
(0.373) 		0.0583
(0.264) 		0.387
(0.714) 		0.56
(0.871) 		0.137
(0.413) 		1
(1.00)
POPDC3 8 (2%) 481 0.309
(0.637) 		0.29
(0.619) 		0.0664
(0.277) 		1
(1.00) 		0.173
(0.47) 		0.344
(0.671) 		0.613
(0.913) 		0.323
(0.652) 		0.954
(1.00) 		0.286
(0.615)
BFSP1 9 (2%) 480 0.637
(0.927) 		0.202
(0.508) 		0.389
(0.715) 		0.884
(1.00) 		0.584
(0.888) 		0.0785
(0.301) 		0.188
(0.49) 		0.717
(0.987) 		0.491
(0.817) 		0.265
(0.591)
CLEC1A 10 (2%) 479 0.31
(0.638) 		1
(1.00) 		0.0628
(0.272) 		0.877
(1.00) 		0.175
(0.475) 		0.562
(0.873) 		0.688
(0.966) 		0.372
(0.702) 		1
(1.00) 		0.528
(0.848) 		0.137
(0.413) 		0.841
(1.00)
NAPA 7 (1%) 482 0.407
(0.732) 		0.555
(0.87) 		0.328
(0.656) 		0.0615
(0.269) 		0.457
(0.783) 		0.17
(0.467) 		0.53
(0.85) 		0.519
(0.84) 		1
(1.00) 		0.51
(0.832)
ZNF286B 5 (1%) 484 0.386
(0.713) 		0.527
(0.848) 		0.456
(0.783) 		1
(1.00) 		0.564
(0.873) 		0.248
(0.574) 		0.547
(0.865) 		0.633
(0.927)
CTSA 6 (1%) 483 0.786
(1.00) 		0.462
(0.788) 		0.094
(0.336) 		0.778
(1.00) 		0.139
(0.416) 		0.505
(0.831) 		0.51
(0.832) 		0.107
(0.362) 		0.886
(1.00) 		0.525
(0.847)
DDX55 11 (2%) 478 0.627
(0.925) 		0.254
(0.577) 		0.07
(0.285) 		0.0676
(0.28) 		0.832
(1.00) 		0.91
(1.00) 		0.333
(0.66) 		0.105
(0.359) 		0.429
(0.757) 		0.0506
(0.242)
SFRP2 10 (2%) 479 0.629
(0.925) 		0.791
(1.00) 		0.337
(0.665) 		0.284
(0.612) 		0.66
(0.946) 		0.189
(0.49) 		0.535
(0.854) 		0.139
(0.415) 		0.293
(0.622) 		0.341
(0.668)
LRRC31 16 (3%) 473 0.178
(0.477) 		0.738
(1.00) 		0.424
(0.752) 		0.472
(0.8) 		0.932
(1.00) 		1
(1.00) 		0.839
(1.00) 		0.121
(0.387) 		0.718
(0.987) 		0.907
(1.00) 		0.782
(1.00) 		0.252
(0.577)
RARG 10 (2%) 479 0.697
(0.97) 		0.12
(0.385) 		0.153
(0.439) 		0.323
(0.652) 		0.122
(0.388) 		0.773
(1.00) 		0.42
(0.748) 		0.944
(1.00) 		0.513
(0.835) 		0.552
(0.869)
TCTEX1D2 7 (1%) 482 0.487
(0.814) 		1
(1.00) 		0.621
(0.919) 		0.688
(0.966) 		0.765
(1.00) 		0.577
(0.884) 		0.872
(1.00) 		0.775
(1.00) 		0.674
(0.956) 		0.949
(1.00)
CXORF23 7 (1%) 482 0.66
(0.946) 		0.592
(0.896) 		0.797
(1.00) 		0.885
(1.00) 		0.274
(0.6) 		0.196
(0.499) 		0.338
(0.665) 		0.854
(1.00) 		0.645
(0.931) 		0.769
(1.00)
EFCAB4B 7 (1%) 482 0.0997
(0.347) 		0.633
(0.927) 		0.106
(0.36) 		0.718
(0.987) 		0.61
(0.911) 		0.063
(0.272) 		0.862
(1.00) 		0.267
(0.593)
EPSTI1 7 (1%) 482 0.105
(0.358) 		0.876
(1.00) 		0.509
(0.832) 		0.86
(1.00) 		0.609
(0.909) 		0.405
(0.73) 		0.901
(1.00) 		0.669
(0.954)
IGFBP3 8 (2%) 481 0.122
(0.387) 		0.292
(0.62) 		0.759
(1.00) 		1
(1.00) 		0.228
(0.548) 		0.486
(0.813) 		0.717
(0.987) 		0.679
(0.96) 		0.614
(0.913) 		0.981
(1.00)
SLC14A1 7 (1%) 482 0.284
(0.612) 		1
(1.00) 		0.635
(0.927) 		1
(1.00) 		0.796
(1.00) 		0.391
(0.716) 		0.308
(0.637) 		0.8
(1.00) 		0.873
(1.00) 		0.111
(0.369)
ESRP2 10 (2%) 479 0.0651
(0.276) 		0.254
(0.577) 		0.165
(0.459) 		0.712
(0.983) 		0.832
(1.00) 		0.823
(1.00) 		0.659
(0.945) 		0.166
(0.46) 		0.783
(1.00) 		0.433
(0.76) 		0.267
(0.593) 		0.765
(1.00)
IL6R 8 (2%) 481 0.628
(0.925) 		0.253
(0.577) 		0.0598
(0.267) 		1
(1.00) 		0.489
(0.816) 		0.259
(0.583) 		0.828
(1.00) 		0.16
(0.452) 		0.817
(1.00) 		0.524
(0.845)
PDSS2 6 (1%) 483 0.102
(0.353) 		0.324
(0.653) 		1
(1.00) 		1
(1.00) 		0.314
(0.642) 		0.193
(0.496) 		0.833
(1.00) 		0.224
(0.539)
SPAM1 13 (3%) 476 0.31
(0.637) 		0.835
(1.00) 		0.0803
(0.305) 		1
(1.00) 		0.809
(1.00) 		0.691
(0.968) 		0.733
(0.999) 		0.519
(0.84) 		0.757
(1.00) 		0.631
(0.926) 		0.0862
(0.317) 		0.563
(0.873)
ZFP91 8 (2%) 481 0.392
(0.717) 		0.63
(0.926) 		0.14
(0.416) 		0.684
(0.963) 		0.693
(0.969) 		0.941
(1.00) 		0.634
(0.927) 		0.33
(0.657)
OR13C5 13 (3%) 476 0.787
(1.00) 		1
(1.00) 		0.627
(0.925) 		0.921
(1.00) 		0.163
(0.457) 		0.314
(0.642) 		0.345
(0.672) 		0.0827
(0.311) 		0.633
(0.927) 		0.542
(0.862) 		0.243
(0.568) 		0.766
(1.00)
GOLGA1 8 (2%) 481 0.121
(0.387) 		0.254
(0.577) 		0.113
(0.373) 		0.633
(0.927) 		0.139
(0.415) 		0.507
(0.832) 		0.291
(0.62) 		0.656
(0.942) 		0.353
(0.681) 		0.478
(0.806)
FAM70A 8 (2%) 481 0.0658
(0.276) 		0.448
(0.775) 		0.238
(0.561) 		0.581
(0.886) 		0.717
(0.987) 		0.238
(0.561) 		0.864
(1.00) 		0.3
(0.629)
RUNDC2A 7 (1%) 482 0.154
(0.441) 		0.351
(0.679) 		0.104
(0.357) 		0.204
(0.511) 		0.616
(0.915) 		0.885
(1.00) 		0.473
(0.801) 		0.554
(0.87) 		0.931
(1.00) 		0.794
(1.00)
VCX3A 5 (1%) 484 0.295
(0.624) 		0.233
(0.553) 		0.112
(0.371) 		0.302
(0.631) 		0.491
(0.817) 		0.33
(0.657) 		0.351
(0.679) 		0.72
(0.988)
SLCO1B3 19 (4%) 470 0.167
(0.461) 		0.377
(0.706) 		0.579
(0.885) 		1
(1.00) 		0.46
(0.787) 		0.498
(0.824) 		0.268
(0.593) 		0.475
(0.804) 		0.67
(0.954) 		0.803
(1.00) 		0.416
(0.743) 		0.524
(0.845)
LCN9 4 (1%) 485 0.537
(0.856) 		1
(1.00) 		0.92
(1.00) 		0.519
(0.84) 		0.665
(0.95) 		0.652
(0.938)
MED24 11 (2%) 478 0.818
(1.00) 		0.638
(0.927) 		0.169
(0.465) 		0.195
(0.497) 		0.919
(1.00) 		0.359
(0.688) 		0.222
(0.536) 		0.324
(0.653) 		0.691
(0.968) 		0.119
(0.384)
MKLN1 11 (2%) 478 0.222
(0.536) 		0.253
(0.577) 		0.211
(0.52) 		0.325
(0.655) 		1
(1.00) 		0.165
(0.459) 		1
(1.00) 		0.571
(0.878) 		0.548
(0.866) 		0.361
(0.69)
MPHOSPH9 10 (2%) 479 0.439
(0.766) 		0.453
(0.78) 		0.277
(0.604) 		0.877
(1.00) 		0.818
(1.00) 		0.642
(0.929) 		0.691
(0.968) 		0.0766
(0.298) 		0.936
(1.00) 		0.604
(0.905) 		0.148
(0.43) 		1
(1.00)
TM7SF4 9 (2%) 480 0.0509
(0.242) 		0.821
(1.00) 		0.213
(0.522) 		0.823
(1.00) 		0.712
(0.983) 		0.609
(0.91) 		0.76
(1.00) 		0.752
(1.00)
ZNF585B 8 (2%) 481 0.0657
(0.276) 		1
(1.00) 		0.205
(0.511) 		0.629
(0.925) 		0.0889
(0.324) 		0.166
(0.46) 		0.653
(0.939) 		0.247
(0.573) 		0.636
(0.927) 		0.147
(0.428)
DRD3 6 (1%) 483 0.0646
(0.275) 		0.253
(0.577) 		0.525
(0.846) 		0.296
(0.625) 		0.583
(0.887) 		0.859
(1.00) 		1
(1.00) 		0.365
(0.694) 		0.639
(0.927) 		0.788
(1.00)
SMG7 12 (2%) 477 0.856
(1.00) 		0.446
(0.773) 		0.672
(0.955) 		0.773
(1.00) 		0.0636
(0.274) 		0.102
(0.353) 		0.329
(0.656) 		0.333
(0.66) 		0.824
(1.00) 		0.453
(0.779) 		0.627
(0.925) 		0.694
(0.969)
OR51T1 13 (3%) 476 0.12
(0.386) 		1
(1.00) 		0.683
(0.963) 		0.724
(0.992) 		0.199
(0.503) 		0.427
(0.754) 		0.62
(0.918) 		0.0621
(0.271) 		0.569
(0.876) 		0.703
(0.975) 		1
(1.00) 		1
(1.00)
NPPB 5 (1%) 484 0.22
(0.535) 		0.324
(0.654) 		0.554
(0.87) 		0.529
(0.849) 		0.603
(0.905) 		0.21
(0.519) 		0.326
(0.656) 		0.86
(1.00)
ZDHHC21 5 (1%) 484 0.89
(1.00) 		0.619
(0.918) 		0.791
(1.00) 		0.556
(0.87) 		0.327
(0.656) 		0.264
(0.59) 		0.273
(0.598) 		0.471
(0.799) 		0.846
(1.00)
AKNA 12 (2%) 477 1
(1.00) 		0.178
(0.478) 		0.133
(0.408) 		0.179
(0.479) 		0.66
(0.946) 		0.763
(1.00) 		0.954
(1.00) 		0.477
(0.805) 		0.898
(1.00) 		0.403
(0.729) 		0.627
(0.925) 		0.696
(0.969)
PHLDB2 20 (4%) 469 0.0837
(0.313) 		0.597
(0.9) 		0.208
(0.516) 		0.102
(0.354) 		0.21
(0.518) 		0.721
(0.989) 		0.182
(0.483) 		0.652
(0.938) 		0.0803
(0.305) 		0.536
(0.856)
IDI1 4 (1%) 485 0.122
(0.388) 		0.78
(1.00) 		1
(1.00) 		1
(1.00) 		0.305
(0.635) 		0.147
(0.428) 		0.302
(0.632) 		0.391
(0.716)
PDK1 7 (1%) 482 0.0604
(0.268) 		0.63
(0.925) 		0.582
(0.887) 		0.204
(0.51) 		0.611
(0.911) 		0.109
(0.365) 		0.902
(1.00) 		0.168
(0.462)
C1ORF88 6 (1%) 483 0.18
(0.481) 		1
(1.00) 		0.846
(1.00) 		1
(1.00) 		0.942
(1.00) 		0.415
(0.743) 		0.744
(1.00) 		0.39
(0.716)
PIAS2 5 (1%) 484 0.0652
(0.276) 		1
(1.00) 		0.383
(0.712) 		0.686
(0.964) 		0.674
(0.956) 		0.265
(0.59) 		0.797
(1.00) 		0.932
(1.00) 		0.801
(1.00)
HAP1 8 (2%) 481 0.627
(0.925) 		0.25
(0.576) 		0.0601
(0.268) 		0.389
(0.716) 		0.277
(0.604) 		1
(1.00) 		0.858
(1.00) 		0.557
(0.87) 		0.386
(0.713) 		0.652
(0.938)
TRAF3IP1 7 (1%) 482 0.28
(0.608) 		0.0762
(0.297) 		0.138
(0.414) 		0.505
(0.831) 		0.168
(0.463) 		0.208
(0.515) 		0.0623
(0.271) 		0.117
(0.38)
ZNF259 3 (1%) 486 0.276
(0.603) 		0.692
(0.969) 		0.566
(0.874) 		0.39
(0.716) 		0.672
(0.955)
SRL 12 (2%) 477 0.079
(0.302) 		0.504
(0.831) 		0.318
(0.647) 		0.765
(1.00) 		0.168
(0.463) 		0.0576
(0.262) 		0.295
(0.624) 		0.417
(0.744) 		0.703
(0.975) 		0.693
(0.969)
GABRA4 13 (3%) 476 0.389
(0.716) 		1
(1.00) 		0.0862
(0.317) 		1
(1.00) 		0.384
(0.712) 		0.209
(0.516) 		0.15
(0.434) 		0.773
(1.00) 		0.621
(0.919) 		0.768
(1.00) 		0.0965
(0.34) 		0.767
(1.00)
VCAN 43 (9%) 446 0.0624
(0.271) 		0.557
(0.87) 		0.0506
(0.242) 		0.671
(0.954) 		0.221
(0.535) 		0.211
(0.519) 		0.911
(1.00) 		0.335
(0.663) 		0.448
(0.774) 		0.46
(0.787) 		0.0614
(0.269) 		0.794
(1.00)
PTPMT1 7 (1%) 482 0.0803
(0.305) 		0.327
(0.656) 		0.138
(0.414) 		0.507
(0.832) 		0.128
(0.398) 		0.208
(0.515) 		0.321
(0.65) 		0.3
(0.629) 		0.167
(0.461) 		0.139
(0.416)
HEXIM2 7 (1%) 482 0.284
(0.612) 		0.875
(1.00) 		0.615
(0.914) 		0.686
(0.965) 		0.299
(0.629) 		0.298
(0.627) 		0.902
(1.00) 		0.0897
(0.326)
DPPA2 8 (2%) 481 0.165
(0.459) 		0.876
(1.00) 		0.0613
(0.269) 		0.101
(0.351) 		0.543
(0.863) 		0.0561
(0.258) 		0.331
(0.658) 		0.0715
(0.288)
DDR2 15 (3%) 474 0.174
(0.472) 		0.881
(1.00) 		0.594
(0.898) 		0.836
(1.00) 		0.583
(0.887) 		0.849
(1.00) 		0.79
(1.00) 		0.724
(0.992) 		0.707
(0.978) 		0.36
(0.688) 		0.728
(0.995) 		0.681
(0.962)
NCF2 10 (2%) 479 0.902
(1.00) 		0.221
(0.535) 		0.421
(0.749) 		0.327
(0.656) 		0.488
(0.815) 		0.126
(0.394) 		0.293
(0.621) 		0.255
(0.578)
DHDDS 6 (1%) 483 0.182
(0.483) 		0.629
(0.925) 		0.453
(0.779) 		0.251
(0.577) 		0.152
(0.438) 		0.148
(0.43) 		0.401
(0.726) 		0.119
(0.384)
ARL11 7 (1%) 482 0.0991
(0.346) 		1
(1.00) 		0.329
(0.656) 		0.338
(0.666) 		0.76
(1.00) 		0.106
(0.359) 		0.323
(0.652) 		0.539
(0.86)
HSF5 8 (2%) 481 0.12
(0.385) 		0.252
(0.577) 		0.23
(0.55) 		0.739
(1.00) 		0.197
(0.5) 		0.164
(0.457) 		1
(1.00) 		0.0636
(0.274) 		0.709
(0.98) 		0.631
(0.926) 		0.781
(1.00) 		0.311
(0.638)
SKAP2 5 (1%) 484 0.63
(0.925) 		0.251
(0.577) 		0.384
(0.712) 		0.295
(0.624) 		0.363
(0.692) 		0.83
(1.00) 		1
(1.00) 		0.704
(0.975) 		0.477
(0.806) 		0.841
(1.00)
BEX5 7 (1%) 482 0.154
(0.44) 		1
(1.00) 		0.542
(0.862) 		0.505
(0.831) 		0.221
(0.535) 		0.157
(0.447) 		0.48
(0.808) 		0.372
(0.702)
GTDC1 10 (2%) 479 0.307
(0.637) 		0.0626
(0.272) 		0.0573
(0.261) 		0.679
(0.96) 		0.194
(0.497) 		0.167
(0.461) 		0.388
(0.715) 		0.103
(0.356) 		0.963
(1.00) 		0.172
(0.47)
MYOG 6 (1%) 483 0.0928
(0.333) 		0.384
(0.712) 		0.731
(0.998) 		0.344
(0.671) 		0.215
(0.525) 		0.196
(0.498) 		0.744
(1.00) 		0.987
(1.00)
RAB22A 3 (1%) 486 0.276
(0.603) 		0.612
(0.912) 		1
(1.00) 		0.517
(0.839) 		0.29
(0.618) 		0.549
(0.866) 		0.376
(0.706)
PDGFC 10 (2%) 479 0.0636
(0.274) 		1
(1.00) 		0.127
(0.396) 		0.14
(0.416) 		0.511
(0.833) 		1
(1.00) 		0.782
(1.00) 		0.162
(0.455) 		0.738
(1.00) 		0.585
(0.889) 		0.907
(1.00) 		0.868
(1.00)
MLNR 4 (1%) 485 0.276
(0.603) 		0.112
(0.371) 		0.592
(0.896) 		0.84
(1.00) 		0.354
(0.682) 		0.823
(1.00) 		0.39
(0.716)
GSK3B 15 (3%) 474 0.136
(0.411) 		0.119
(0.385) 		0.0929
(0.333) 		0.477
(0.806) 		0.795
(1.00) 		0.782
(1.00) 		0.301
(0.63) 		0.739
(1.00) 		0.388
(0.715) 		0.811
(1.00)
CYP2C9 9 (2%) 480 0.222
(0.537) 		0.738
(1.00) 		0.748
(1.00) 		0.466
(0.792) 		0.311
(0.638) 		0.372
(0.702) 		0.515
(0.836) 		0.862
(1.00) 		0.61
(0.911) 		0.171
(0.468)
ADAM33 7 (1%) 482 0.787
(1.00) 		1
(1.00) 		0.327
(0.656) 		1
(1.00) 		0.33
(0.657) 		0.496
(0.822) 		0.76
(1.00) 		0.38
(0.709) 		0.69
(0.968) 		0.702
(0.974)
NLRP8 28 (6%) 461 0.187
(0.488) 		0.0696
(0.284) 		0.178
(0.478) 		0.779
(1.00) 		0.183
(0.484) 		0.212
(0.521) 		0.84
(1.00) 		0.15
(0.434) 		0.758
(1.00) 		0.44
(0.766) 		0.553
(0.87) 		0.315
(0.642)
ZCWPW2 14 (3%) 475 0.771
(1.00) 		1
(1.00) 		0.237
(0.559) 		0.142
(0.419) 		0.546
(0.865) 		0.391
(0.716) 		0.101
(0.351) 		0.127
(0.396) 		0.809
(1.00) 		0.446
(0.773) 		0.253
(0.577) 		1
(1.00)
MDM2 9 (2%) 480 0.0985
(0.345) 		1
(1.00) 		0.26
(0.584) 		0.404
(0.729) 		0.367
(0.696) 		0.269
(0.594) 		0.591
(0.896) 		0.152
(0.437)
BATF 3 (1%) 486 0.666
(0.951) 		0.794
(1.00) 		0.15
(0.434) 		0.318
(0.646) 		0.65
(0.937)
TMEM41B 5 (1%) 484 0.384
(0.712) 		0.516
(0.838) 		0.684
(0.963) 		0.671
(0.954) 		1
(1.00) 		0.485
(0.813) 		0.507
(0.832) 		0.802
(1.00)
NUDT16L1 3 (1%) 486 0.278
(0.605) 		0.793
(1.00) 		0.589
(0.893) 		0.606
(0.906) 		0.312
(0.64) 		0.86
(1.00) 		0.62
(0.918)
SNX33 11 (2%) 478 0.89
(1.00) 		0.122
(0.388) 		0.0717
(0.289) 		0.205
(0.511) 		0.155
(0.442) 		0.67
(0.954) 		0.159
(0.451) 		0.14
(0.417) 		0.871
(1.00) 		0.696
(0.969) 		0.0871
(0.32) 		1
(1.00)
BATF3 4 (1%) 485 0.121
(0.387) 		0.512
(0.834) 		0.83
(1.00) 		0.828
(1.00) 		0.305
(0.635) 		0.102
(0.352) 		1
(1.00) 		0.349
(0.677)
RHBDD1 8 (2%) 481 0.481
(0.809) 		0.833
(1.00) 		0.113
(0.373) 		0.529
(0.849) 		0.123
(0.39) 		1
(1.00) 		0.443
(0.771) 		0.677
(0.959) 		0.877
(1.00) 		0.866
(1.00) 		1
(1.00) 		0.195
(0.498)
KRT39 7 (1%) 482 0.735
(1.00) 		1
(1.00) 		1
(1.00) 		1
(1.00) 		0.496
(0.822) 		0.141
(0.418) 		0.662
(0.948) 		0.55
(0.867)
OR2M5 12 (2%) 477 0.258
(0.581) 		0.739
(1.00) 		0.745
(1.00) 		0.142
(0.419) 		0.321
(0.65) 		0.331
(0.658) 		0.792
(1.00) 		0.412
(0.739) 		1
(1.00) 		0.193
(0.497) 		0.35
(0.678) 		0.852
(1.00)
SGCE 8 (2%) 481 0.461
(0.788) 		0.74
(1.00) 		0.127
(0.396) 		0.0604
(0.268) 		0.832
(1.00) 		0.668
(0.953) 		0.419
(0.747) 		0.132
(0.405) 		0.657
(0.944) 		0.771
(1.00) 		0.359
(0.687) 		0.447
(0.773)
ZNF622 9 (2%) 480 0.255
(0.578) 		0.504
(0.831) 		1
(1.00) 		0.86
(1.00) 		0.121
(0.387) 		0.0612
(0.269) 		0.308
(0.637) 		0.219
(0.532) 		0.254
(0.577) 		1
(1.00)
TAB1 3 (1%) 486 0.279
(0.607) 		0.615
(0.914) 		0.0833
(0.312) 		0.267
(0.593) 		0.0956
(0.339) 		0.642
(0.929) 		0.123
(0.389)
NIT2 5 (1%) 484 0.192
(0.494) 		0.617
(0.916) 		0.387
(0.714) 		0.614
(0.914) 		1
(1.00) 		0.265
(0.591) 		0.934
(1.00) 		0.931
(1.00) 		0.526
(0.847)
DCAF12L2 20 (4%) 469 0.316
(0.644) 		0.214
(0.523) 		0.295
(0.624) 		0.618
(0.916) 		0.803
(1.00) 		0.944
(1.00) 		0.187
(0.488) 		0.0679
(0.281) 		0.0943
(0.336) 		0.141
(0.418) 		0.869
(1.00) 		0.885
(1.00)
UBA7 12 (2%) 477 0.31
(0.637) 		0.232
(0.552) 		0.226
(0.542) 		0.145
(0.424) 		0.714
(0.984) 		0.641
(0.928) 		0.578
(0.884) 		0.216
(0.526) 		0.417
(0.745) 		0.103
(0.356) 		0.782
(1.00) 		0.141
(0.418)
TSPYL4 4 (1%) 485 0.121
(0.387) 		0.252
(0.577) 		0.12
(0.386) 		0.0562
(0.258) 		1
(1.00) 		0.461
(0.787) 		0.725
(0.992) 		0.55
(0.867) 		0.469
(0.796)
RAGE 9 (2%) 480 0.19
(0.492) 		0.46
(0.787) 		0.443
(0.771) 		0.682
(0.962) 		0.152
(0.438) 		0.895
(1.00) 		0.138
(0.414) 		0.357
(0.687) 		0.31
(0.637) 		0.483
(0.81) 		0.0658
(0.276) 		0.43
(0.757)
TNNT2 8 (2%) 481 0.626
(0.924) 		0.252
(0.577) 		0.0608
(0.268) 		0.325
(0.655) 		0.544
(0.864) 		0.213
(0.522) 		0.291
(0.619) 		0.0954
(0.338) 		0.382
(0.711) 		0.654
(0.94)
TTR 4 (1%) 485 0.233
(0.553) 		0.251
(0.577) 		0.342
(0.669) 		0.457
(0.783) 		0.907
(1.00) 		0.481
(0.809) 		0.804
(1.00)
FOXA2 7 (1%) 482 1
(1.00) 		0.193
(0.496) 		0.296
(0.625) 		0.596
(0.899) 		0.38
(0.709) 		0.0745
(0.293) 		0.862
(1.00) 		0.474
(0.802)
CPB1 9 (2%) 480 0.615
(0.914) 		1
(1.00) 		1
(1.00) 		0.466
(0.793) 		0.386
(0.713) 		0.859
(1.00) 		0.477
(0.805) 		0.976
(1.00) 		0.913
(1.00) 		0.709
(0.981)
BHLHE41 5 (1%) 484 0.321
(0.65) 		0.69
(0.968) 		0.613
(0.913) 		0.424
(0.751) 		0.778
(1.00) 		0.155
(0.442) 		0.406
(0.731) 		0.432
(0.76)
NSF 4 (1%) 485 0.341
(0.668) 		0.295
(0.624) 		1
(1.00) 		0.251
(0.577) 		0.919
(1.00) 		0.142
(0.419) 		0.665
(0.951) 		0.422
(0.75)
SAMD11 6 (1%) 483 0.529
(0.849) 		0.833
(1.00) 		1
(1.00) 		0.271
(0.596) 		0.841
(1.00) 		0.107
(0.361) 		0.742
(1.00) 		0.5
(0.826)
TMSB15B 4 (1%) 485 0.0601
(0.268) 		1
(1.00) 		0.333
(0.66) 		0.297
(0.627) 		0.205
(0.511) 		0.151
(0.435) 		0.186
(0.486) 		0.915
(1.00) 		1
(1.00) 		0.312
(0.64)
FBXL19 7 (1%) 482 0.549
(0.866) 		1
(1.00) 		0.0947
(0.337) 		0.861
(1.00) 		0.301
(0.63) 		0.304
(0.633) 		0.384
(0.712) 		0.0655
(0.276)
CLTCL1 20 (4%) 469 0.0609
(0.268) 		0.796
(1.00) 		0.157
(0.446) 		0.722
(0.99) 		0.949
(1.00) 		0.944
(1.00) 		0.977
(1.00) 		0.434
(0.762) 		0.0688
(0.282) 		0.215
(0.526) 		0.781
(1.00) 		0.693
(0.969)
DCTN4 6 (1%) 483 0.219
(0.532) 		0.0553
(0.256) 		0.137
(0.413) 		0.854
(1.00) 		0.557
(0.87) 		0.163
(0.457) 		0.13
(0.401) 		0.168
(0.462)
TNFRSF13B 7 (1%) 482 0.368
(0.698) 		0.232
(0.552) 		0.0921
(0.331) 		0.515
(0.836) 		0.733
(0.999) 		0.716
(0.987) 		1
(1.00) 		0.617
(0.916) 		0.349
(0.677) 		0.232
(0.552)
MYO5A 23 (5%) 466 0.316
(0.644) 		0.633
(0.927) 		0.0982
(0.344) 		0.738
(1.00) 		0.39
(0.716) 		0.772
(1.00) 		0.178
(0.477) 		0.519
(0.84) 		0.874
(1.00) 		0.992
(1.00) 		0.832
(1.00) 		0.542
(0.862)
MNT 8 (2%) 481 0.0667
(0.278) 		0.29
(0.618) 		0.266
(0.591) 		1
(1.00) 		0.068
(0.281) 		0.269
(0.594) 		0.437
(0.764) 		0.229
(0.549) 		0.0833
(0.312) 		1
(1.00)
CAMK1 8 (2%) 481 0.0654
(0.276) 		0.184
(0.485) 		0.0611
(0.269) 		1
(1.00) 		0.735
(1.00) 		0.566
(0.874) 		0.676
(0.958) 		0.119
(0.385) 		0.386
(0.713) 		0.253
(0.577)
SRRM3 3 (1%) 486 0.664
(0.95) 		1
(1.00) 		0.151
(0.434) 		0.643
(0.93) 		0.31
(0.638)
ZP3 7 (1%) 482 0.889
(1.00) 		0.79
(1.00) 		1
(1.00) 		0.325
(0.655) 		0.549
(0.866) 		0.885
(1.00) 		0.872
(1.00) 		0.47
(0.798) 		0.903
(1.00) 		0.329
(0.656)
GLI4 5 (1%) 484 0.384
(0.712) 		0.394
(0.719) 		1
(1.00) 		0.717
(0.987) 		0.19
(0.492) 		0.282
(0.61) 		0.187
(0.488) 		0.651
(0.938)
ITGA2 9 (2%) 480 0.0511
(0.243) 		1
(1.00) 		0.127
(0.396) 		0.386
(0.713) 		0.199
(0.502) 		0.419
(0.747) 		0.221
(0.535) 		0.285
(0.614) 		0.735
(1.00) 		0.173
(0.471)
PRSS27 4 (1%) 485 0.536
(0.855) 		0.64
(0.928) 		1
(1.00) 		1
(1.00) 		0.338
(0.666) 		0.752
(1.00) 		1
(1.00) 		0.308
(0.637)
FAM167B 4 (1%) 485 0.867
(1.00) 		0.64
(0.928) 		0.419
(0.747) 		0.151
(0.435) 		0.903
(1.00) 		0.705
(0.976)
OR5AN1 6 (1%) 483 0.253
(0.577) 		0.328
(0.656) 		0.611
(0.911) 		0.588
(0.893) 		0.0611
(0.269) 		0.061
(0.269) 		0.449
(0.775) 		0.939
(1.00) 		0.166
(0.46) 		0.694
(0.969)
ARHGAP10 9 (2%) 480 0.0763
(0.297) 		0.503
(0.83) 		0.0696
(0.284) 		0.288
(0.617) 		0.604
(0.905) 		0.225
(0.541) 		1
(1.00) 		0.422
(0.75) 		0.192
(0.495) 		0.603
(0.905)
LRMP 7 (1%) 482 0.31
(0.637) 		0.556
(0.87) 		0.548
(0.866) 		0.262
(0.587) 		0.51
(0.832) 		0.29
(0.619) 		0.731
(0.998) 		0.829
(1.00) 		0.0706
(0.287) 		0.774
(1.00)
KDELR2 6 (1%) 483 0.814
(1.00) 		0.688
(0.966) 		0.511
(0.833) 		1
(1.00) 		0.799
(1.00) 		0.238
(0.56) 		0.832
(1.00) 		0.454
(0.78)
SIAH2 9 (2%) 480 0.075
(0.294) 		0.0615
(0.269) 		0.127
(0.396) 		0.327
(0.656) 		0.177
(0.477) 		1
(1.00) 		0.801
(1.00) 		0.0518
(0.246) 		0.613
(0.913) 		0.445
(0.772) 		0.167
(0.461) 		0.141
(0.418)
YWHAH 5 (1%) 484 1
(1.00) 		0.112
(0.371) 		0.555
(0.87) 		0.328
(0.656) 		0.244
(0.569) 		0.0535
(0.251) 		0.631
(0.926) 		0.0694
(0.284)
OR5A1 5 (1%) 484 0.142
(0.419) 		1
(1.00) 		0.546
(0.865) 		0.721
(0.99) 		0.0565
(0.258) 		0.0568
(0.26) 		0.127
(0.396) 		0.35
(0.677)
CPO 9 (2%) 480 0.748
(1.00) 		0.569
(0.876) 		0.545
(0.864) 		0.717
(0.987) 		0.6
(0.903) 		0.61
(0.91) 		0.31
(0.637) 		0.519
(0.84)
CLK4 9 (2%) 480 0.526
(0.847) 		0.711
(0.983) 		0.815
(1.00) 		0.465
(0.792) 		0.118
(0.383) 		0.0615
(0.269) 		0.318
(0.647) 		0.321
(0.65) 		1
(1.00) 		0.145
(0.424)
ATG4D 12 (2%) 477 0.461
(0.787) 		0.638
(0.927) 		0.0808
(0.307) 		0.633
(0.927) 		0.177
(0.477) 		0.309
(0.637) 		0.145
(0.424) 		0.0833
(0.312) 		0.419
(0.747) 		0.454
(0.781)
ALG9 4 (1%) 485 0.536
(0.856) 		1
(1.00) 		0.423
(0.751) 		0.235
(0.556) 		0.295
(0.624) 		0.741
(1.00) 		0.735
(1)
MAGEB2 14 (3%) 475 0.231
(0.551) 		0.458
(0.785) 		0.357
(0.686) 		0.113
(0.373) 		0.164
(0.457) 		0.527
(0.848) 		0.42
(0.748) 		0.405
(0.73) 		0.745
(1.00) 		0.79
(1.00) 		0.644
(0.93) 		0.318
(0.647)
HIST1H3B 4 (1%) 485 0.339
(0.666) 		0.641
(0.928) 		0.454
(0.781) 		1
(1.00) 		0.92
(1.00) 		0.132
(0.406) 		0.904
(1.00) 		0.286
(0.615)
GLTPD2 4 (1%) 485 0.122
(0.388) 		0.776
(1.00) 		0.249
(0.575) 		0.0821
(0.31) 		0.337
(0.665) 		0.298
(0.627) 		0.744
(1.00) 		0.836
(1.00)
SLC35A1 3 (1%) 486 0.662
(0.948) 		0.519
(0.84) 		0.58
(0.885) 		0.549
(0.866) 		0.377
(0.706)
IFI35 8 (2%) 481 0.628
(0.925) 		0.254
(0.577) 		0.311
(0.638) 		0.0977
(0.343) 		0.476
(0.805) 		0.327
(0.656) 		0.187
(0.488) 		0.362
(0.69) 		0.154
(0.44) 		0.564
(0.873)
DAGLB 6 (1%) 483 0.119
(0.384) 		0.347
(0.675) 		0.526
(0.847) 		0.778
(1.00) 		0.634
(0.927) 		0.341
(0.668) 		0.458
(0.784) 		0.5
(0.826) 		0.604
(0.905) 		0.657
(0.943)
CXCL9 7 (1%) 482 0.0646
(0.275) 		1
(1.00) 		0.106
(0.36) 		0.558
(0.87) 		0.385
(0.712) 		0.667
(0.951) 		0.456
(0.783) 		0.189
(0.49) 		0.945
(1.00) 		0.724
(0.992)
CCDC111 9 (2%) 480 0.192
(0.494) 		0.617
(0.916) 		0.462
(0.788) 		0.879
(1.00) 		0.195
(0.498) 		0.119
(0.385) 		0.584
(0.888) 		0.405
(0.73) 		0.757
(1.00) 		0.0677
(0.28)
C10ORF81 4 (1%) 485 0.616
(0.915) 		0.339
(0.666) 		0.423
(0.751) 		1
(1.00) 		0.84
(1.00) 		1
(1.00) 		0.204
(0.51)
CUTC 5 (1%) 484 0.636
(0.927) 		0.468
(0.796) 		0.554
(0.87) 		0.325
(0.655) 		0.775
(1.00) 		0.108
(0.363) 		0.327
(0.656) 		0.182
(0.483)
IGJ 4 (1%) 485 0.123
(0.389) 		0.685
(0.964) 		0.83
(1.00) 		0.459
(0.786) 		0.353
(0.681) 		0.551
(0.867) 		0.936
(1.00)
SUSD5 9 (2%) 480 0.243
(0.568) 		0.327
(0.656) 		0.31
(0.637) 		0.809
(1.00) 		0.622
(0.92) 		0.309
(0.637) 		0.433
(0.76) 		0.81
(1.00) 		0.136
(0.412) 		0.696
(0.969)
CDKL4 5 (1%) 484 0.179
(0.479) 		0.198
(0.502) 		0.686
(0.964) 		0.828
(1.00) 		0.528
(0.849) 		0.934
(1.00) 		0.544
(0.864) 		0.3
(0.63)
RASGRP3 13 (3%) 476 0.134
(0.409) 		0.848
(1.00) 		0.359
(0.688) 		0.797
(1.00) 		0.0704
(0.286) 		0.0632
(0.273) 		0.258
(0.58) 		0.786
(1.00) 		0.314
(0.642) 		0.299
(0.629)
SIGLEC14 8 (2%) 481 0.0601
(0.268) 		0.68
(0.961) 		0.241
(0.564) 		0.665
(0.95) 		0.859
(1.00) 		0.0651
(0.276) 		0.788
(1.00) 		0.588
(0.892) 		0.137
(0.413) 		0.695
(0.969)
CALCR 12 (2%) 477 0.118
(0.383) 		0.738
(1.00) 		0.483
(0.81) 		0.345
(0.673) 		0.0906
(0.328) 		0.503
(0.83) 		0.808
(1.00) 		0.735
(1.00) 		0.526
(0.847) 		0.839
(1.00) 		0.0819
(0.31) 		0.268
(0.594)
ZFP1 4 (1%) 485 0.122
(0.388) 		0.696
(0.969) 		0.169
(0.464) 		0.821
(1.00) 		0.431
(0.758)
FAM199X 10 (2%) 479 0.395
(0.72) 		0.82
(1.00) 		0.384
(0.712) 		0.287
(0.616) 		0.53
(0.85) 		0.37
(0.699) 		0.0834
(0.313) 		0.12
(0.386) 		0.873
(1.00) 		0.315
(0.642)
GNA15 6 (1%) 483 0.527
(0.848) 		0.513
(0.835) 		0.545
(0.865) 		0.853
(1.00) 		0.842
(1.00) 		0.186
(0.487) 		0.378
(0.707) 		0.525
(0.846)
ZNF763 11 (2%) 478 0.274
(0.6) 		1
(1.00) 		0.409
(0.735) 		0.396
(0.721) 		0.514
(0.836) 		0.165
(0.459) 		0.464
(0.79) 		0.61
(0.911) 		0.417
(0.744) 		0.832
(1.00) 		0.137
(0.413) 		0.695
(0.969)
PKIA 10 (2%) 479 0.152
(0.438) 		0.178
(0.478) 		0.265
(0.59) 		0.886
(1.00) 		0.131
(0.403) 		0.0864
(0.318) 		0.31
(0.637) 		0.673
(0.955) 		0.255
(0.577) 		0.696
(0.969)
HPCA 6 (1%) 483 0.179
(0.479) 		0.195
(0.498) 		0.0938
(0.335) 		0.858
(1.00) 		0.888
(1.00) 		0.185
(0.485) 		0.26
(0.583) 		0.879
(1.00)
EIF2B3 6 (1%) 483 0.152
(0.436) 		0.153
(0.439) 		0.545
(0.864) 		0.718
(0.987) 		0.842
(1.00) 		0.513
(0.835) 		0.0814
(0.308) 		0.114
(0.374) 		0.871
(1.00) 		0.378
(0.708)
'APC MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0177 (Fisher's exact test), Q value = 0.13

Table S1.  Gene #1: 'APC MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
APC MUTATED 25 47 47 34
APC WILD-TYPE 21 11 17 9

Figure S1.  Get High-res Image Gene #1: 'APC MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'APC MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00403 (Fisher's exact test), Q value = 0.058

Table S2.  Gene #1: 'APC MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
APC MUTATED 29 69 55
APC WILD-TYPE 22 14 22

Figure S2.  Get High-res Image Gene #1: 'APC MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'APC MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0254 (Fisher's exact test), Q value = 0.16

Table S3.  Gene #1: 'APC MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
APC MUTATED 134 156 89 17
APC WILD-TYPE 44 27 12 3

Figure S3.  Get High-res Image Gene #1: 'APC MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'APC MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0329 (Fisher's exact test), Q value = 0.19

Table S4.  Gene #1: 'APC MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
APC MUTATED 79 78 87
APC WILD-TYPE 8 2 13

Figure S4.  Get High-res Image Gene #1: 'APC MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'APC MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.183 (Fisher's exact test), Q value = 0.48

Table S5.  Gene #1: 'APC MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
APC MUTATED 68 137 115
APC WILD-TYPE 21 23 23
'APC MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.565 (Fisher's exact test), Q value = 0.87

Table S6.  Gene #1: 'APC MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
APC MUTATED 154 109 57
APC WILD-TYPE 28 24 15
'APC MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00015 (Fisher's exact test), Q value = 0.0069

Table S7.  Gene #1: 'APC MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
APC MUTATED 101 86 79 135
APC WILD-TYPE 11 10 13 51

Figure S5.  Get High-res Image Gene #1: 'APC MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'APC MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S8.  Gene #1: 'APC MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
APC MUTATED 60 46 39 36 54 97 69
APC WILD-TYPE 0 4 10 4 9 28 30

Figure S6.  Get High-res Image Gene #1: 'APC MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'APC MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S9.  Gene #1: 'APC MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
APC MUTATED 120 65 67 140
APC WILD-TYPE 10 13 1 56

Figure S7.  Get High-res Image Gene #1: 'APC MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'APC MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00015 (Fisher's exact test), Q value = 0.0069

Table S10.  Gene #1: 'APC MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
APC MUTATED 37 53 27 68 45 40 41 18 63
APC WILD-TYPE 3 9 1 12 24 8 2 10 11

Figure S8.  Get High-res Image Gene #1: 'APC MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'APC MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0371 (Fisher's exact test), Q value = 0.2

Table S11.  Gene #1: 'APC MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
APC MUTATED 31 26 27 15
APC WILD-TYPE 2 5 0 4

Figure S9.  Get High-res Image Gene #1: 'APC MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'APC MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.268 (Fisher's exact test), Q value = 0.59

Table S12.  Gene #1: 'APC MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
APC MUTATED 46 9 22 22
APC WILD-TYPE 8 1 2 0
'TP53 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00257 (Fisher's exact test), Q value = 0.044

Table S13.  Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
TP53 MUTATED 19 40 39 16
TP53 WILD-TYPE 27 18 25 27

Figure S10.  Get High-res Image Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'TP53 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 5e-05 (Fisher's exact test), Q value = 0.0032

Table S14.  Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
TP53 MUTATED 16 59 39
TP53 WILD-TYPE 35 24 38

Figure S11.  Get High-res Image Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'TP53 MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S15.  Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
TP53 MUTATED 77 150 75 15
TP53 WILD-TYPE 101 33 26 5

Figure S12.  Get High-res Image Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'TP53 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.302 (Fisher's exact test), Q value = 0.63

Table S16.  Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
TP53 MUTATED 69 65 72
TP53 WILD-TYPE 18 15 28
'TP53 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.113 (Fisher's exact test), Q value = 0.37

Table S17.  Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
TP53 MUTATED 51 105 98
TP53 WILD-TYPE 38 55 40
'TP53 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.246 (Fisher's exact test), Q value = 0.57

Table S18.  Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
TP53 MUTATED 126 86 42
TP53 WILD-TYPE 56 47 30
'TP53 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00289 (Fisher's exact test), Q value = 0.048

Table S19.  Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
TP53 MUTATED 84 64 68 105
TP53 WILD-TYPE 28 32 24 81

Figure S13.  Get High-res Image Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'TP53 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S20.  Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
TP53 MUTATED 44 36 29 36 53 83 40
TP53 WILD-TYPE 16 14 20 4 10 42 59

Figure S14.  Get High-res Image Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'TP53 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S21.  Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
TP53 MUTATED 100 55 58 102
TP53 WILD-TYPE 30 23 10 94

Figure S15.  Get High-res Image Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'TP53 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 3e-05 (Fisher's exact test), Q value = 0.0022

Table S22.  Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
TP53 MUTATED 28 45 23 58 34 25 36 11 55
TP53 WILD-TYPE 12 17 5 22 35 23 7 17 19

Figure S16.  Get High-res Image Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'TP53 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.365 (Fisher's exact test), Q value = 0.69

Table S23.  Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
TP53 MUTATED 25 25 24 13
TP53 WILD-TYPE 8 6 3 6
'TP53 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.281 (Fisher's exact test), Q value = 0.61

Table S24.  Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
TP53 MUTATED 39 9 19 20
TP53 WILD-TYPE 15 1 5 2
'ARID1A MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0209 (Fisher's exact test), Q value = 0.15

Table S25.  Gene #3: 'ARID1A MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ARID1A MUTATED 10 3 3 4
ARID1A WILD-TYPE 36 55 61 39

Figure S17.  Get High-res Image Gene #3: 'ARID1A MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'ARID1A MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.104 (Fisher's exact test), Q value = 0.36

Table S26.  Gene #3: 'ARID1A MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ARID1A MUTATED 9 6 5
ARID1A WILD-TYPE 42 77 72
'ARID1A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00032 (Fisher's exact test), Q value = 0.011

Table S27.  Gene #3: 'ARID1A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ARID1A MUTATED 48 21 11 3
ARID1A WILD-TYPE 130 162 90 17

Figure S18.  Get High-res Image Gene #3: 'ARID1A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ARID1A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0717 (Fisher's exact test), Q value = 0.29

Table S28.  Gene #3: 'ARID1A MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ARID1A MUTATED 17 14 31
ARID1A WILD-TYPE 70 66 69
'ARID1A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0933 (Fisher's exact test), Q value = 0.33

Table S29.  Gene #3: 'ARID1A MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ARID1A MUTATED 9 26 29
ARID1A WILD-TYPE 80 134 109
'ARID1A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.622 (Fisher's exact test), Q value = 0.92

Table S30.  Gene #3: 'ARID1A MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ARID1A MUTATED 32 23 9
ARID1A WILD-TYPE 150 110 63
'ARID1A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00228 (Fisher's exact test), Q value = 0.041

Table S31.  Gene #3: 'ARID1A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ARID1A MUTATED 18 26 20 19
ARID1A WILD-TYPE 94 70 72 167

Figure S19.  Get High-res Image Gene #3: 'ARID1A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'ARID1A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S32.  Gene #3: 'ARID1A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ARID1A MUTATED 9 14 24 3 11 11 11
ARID1A WILD-TYPE 51 36 25 37 52 114 88

Figure S20.  Get High-res Image Gene #3: 'ARID1A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ARID1A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00027 (Fisher's exact test), Q value = 0.01

Table S33.  Gene #3: 'ARID1A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ARID1A MUTATED 35 17 6 21
ARID1A WILD-TYPE 95 61 62 175

Figure S21.  Get High-res Image Gene #3: 'ARID1A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'ARID1A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00018 (Fisher's exact test), Q value = 0.0078

Table S34.  Gene #3: 'ARID1A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ARID1A MUTATED 7 15 8 14 17 9 7 0 2
ARID1A WILD-TYPE 33 47 20 66 52 39 36 28 72

Figure S22.  Get High-res Image Gene #3: 'ARID1A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'ARID1A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0618 (Fisher's exact test), Q value = 0.27

Table S35.  Gene #3: 'ARID1A MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
ARID1A MUTATED 10 2 3 4
ARID1A WILD-TYPE 23 29 24 15
'ARID1A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.568 (Fisher's exact test), Q value = 0.88

Table S36.  Gene #3: 'ARID1A MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
ARID1A MUTATED 11 0 4 4
ARID1A WILD-TYPE 43 10 20 18
'RNF43 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00032 (Fisher's exact test), Q value = 0.011

Table S37.  Gene #4: 'RNF43 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
RNF43 MUTATED 4 0 0 6
RNF43 WILD-TYPE 42 58 64 37

Figure S23.  Get High-res Image Gene #4: 'RNF43 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'RNF43 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0246 (Fisher's exact test), Q value = 0.16

Table S38.  Gene #4: 'RNF43 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
RNF43 MUTATED 6 1 3
RNF43 WILD-TYPE 45 82 74

Figure S24.  Get High-res Image Gene #4: 'RNF43 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'RNF43 MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S39.  Gene #4: 'RNF43 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
RNF43 MUTATED 43 2 2 0
RNF43 WILD-TYPE 135 181 99 20

Figure S25.  Get High-res Image Gene #4: 'RNF43 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'RNF43 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00019 (Fisher's exact test), Q value = 0.008

Table S40.  Gene #4: 'RNF43 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
RNF43 MUTATED 11 2 23
RNF43 WILD-TYPE 76 78 77

Figure S26.  Get High-res Image Gene #4: 'RNF43 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'RNF43 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.134 (Fisher's exact test), Q value = 0.41

Table S41.  Gene #4: 'RNF43 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
RNF43 MUTATED 8 13 21
RNF43 WILD-TYPE 81 147 117
'RNF43 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.45 (Fisher's exact test), Q value = 0.78

Table S42.  Gene #4: 'RNF43 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
RNF43 MUTATED 23 14 5
RNF43 WILD-TYPE 159 119 67
'RNF43 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S43.  Gene #4: 'RNF43 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
RNF43 MUTATED 1 19 16 11
RNF43 WILD-TYPE 111 77 76 175

Figure S27.  Get High-res Image Gene #4: 'RNF43 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'RNF43 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S44.  Gene #4: 'RNF43 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
RNF43 MUTATED 1 2 30 3 0 2 9
RNF43 WILD-TYPE 59 48 19 37 63 123 90

Figure S28.  Get High-res Image Gene #4: 'RNF43 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'RNF43 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 8e-05 (Fisher's exact test), Q value = 0.0045

Table S45.  Gene #4: 'RNF43 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
RNF43 MUTATED 23 8 0 14
RNF43 WILD-TYPE 107 70 68 182

Figure S29.  Get High-res Image Gene #4: 'RNF43 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'RNF43 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S46.  Gene #4: 'RNF43 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
RNF43 MUTATED 3 12 2 1 21 1 2 3 0
RNF43 WILD-TYPE 37 50 26 79 48 47 41 25 74

Figure S30.  Get High-res Image Gene #4: 'RNF43 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'RNF43 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00012 (Fisher's exact test), Q value = 0.0059

Table S47.  Gene #4: 'RNF43 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
RNF43 MUTATED 4 1 0 8
RNF43 WILD-TYPE 29 30 27 11

Figure S31.  Get High-res Image Gene #4: 'RNF43 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'RNF43 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.1 (Fisher's exact test), Q value = 0.35

Table S48.  Gene #4: 'RNF43 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
RNF43 MUTATED 9 0 4 0
RNF43 WILD-TYPE 45 10 20 22
'CRIPAK MUTATION STATUS' versus 'CN_CNMF'

P value = 0.368 (Fisher's exact test), Q value = 0.7

Table S49.  Gene #5: 'CRIPAK MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
CRIPAK MUTATED 14 9 4 2
CRIPAK WILD-TYPE 164 174 97 18
'CRIPAK MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.107 (Fisher's exact test), Q value = 0.36

Table S50.  Gene #5: 'CRIPAK MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
CRIPAK MUTATED 12 4 13
CRIPAK WILD-TYPE 75 76 87
'CRIPAK MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.804 (Fisher's exact test), Q value = 1

Table S51.  Gene #5: 'CRIPAK MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
CRIPAK MUTATED 7 10 8
CRIPAK WILD-TYPE 82 150 130
'CRIPAK MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.41 (Fisher's exact test), Q value = 0.74

Table S52.  Gene #5: 'CRIPAK MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
CRIPAK MUTATED 15 6 4
CRIPAK WILD-TYPE 167 127 68
'CRIPAK MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S53.  Gene #5: 'CRIPAK MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
CRIPAK MUTATED 7 11 11 0
CRIPAK WILD-TYPE 105 85 81 186

Figure S32.  Get High-res Image Gene #5: 'CRIPAK MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'CRIPAK MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S54.  Gene #5: 'CRIPAK MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
CRIPAK MUTATED 3 8 8 3 7 0 0
CRIPAK WILD-TYPE 57 42 41 37 56 125 99

Figure S33.  Get High-res Image Gene #5: 'CRIPAK MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CRIPAK MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00113 (Fisher's exact test), Q value = 0.027

Table S55.  Gene #5: 'CRIPAK MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
CRIPAK MUTATED 14 6 6 3
CRIPAK WILD-TYPE 116 72 62 193

Figure S34.  Get High-res Image Gene #5: 'CRIPAK MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'CRIPAK MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.164 (Fisher's exact test), Q value = 0.46

Table S56.  Gene #5: 'CRIPAK MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
CRIPAK MUTATED 3 5 2 8 4 2 4 1 0
CRIPAK WILD-TYPE 37 57 26 72 65 46 39 27 74
'CRIPAK MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.737 (Fisher's exact test), Q value = 1

Table S57.  Gene #5: 'CRIPAK MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
CRIPAK MUTATED 3 4 5 3
CRIPAK WILD-TYPE 30 27 22 16
'CRIPAK MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.401 (Fisher's exact test), Q value = 0.73

Table S58.  Gene #5: 'CRIPAK MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
CRIPAK MUTATED 5 1 4 5
CRIPAK WILD-TYPE 49 9 20 17
'SOX9 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.452 (Fisher's exact test), Q value = 0.78

Table S59.  Gene #6: 'SOX9 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
SOX9 MUTATED 2 1 5 1
SOX9 WILD-TYPE 44 57 59 42
'SOX9 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.255 (Fisher's exact test), Q value = 0.58

Table S60.  Gene #6: 'SOX9 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
SOX9 MUTATED 1 2 6
SOX9 WILD-TYPE 50 81 71
'SOX9 MUTATION STATUS' versus 'CN_CNMF'

P value = 4e-05 (Fisher's exact test), Q value = 0.0027

Table S61.  Gene #6: 'SOX9 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
SOX9 MUTATED 30 7 3 1
SOX9 WILD-TYPE 148 176 98 19

Figure S35.  Get High-res Image Gene #6: 'SOX9 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'SOX9 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0166 (Fisher's exact test), Q value = 0.13

Table S62.  Gene #6: 'SOX9 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
SOX9 MUTATED 7 5 19
SOX9 WILD-TYPE 80 75 81

Figure S36.  Get High-res Image Gene #6: 'SOX9 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'SOX9 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.965 (Fisher's exact test), Q value = 1

Table S63.  Gene #6: 'SOX9 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
SOX9 MUTATED 6 10 10
SOX9 WILD-TYPE 83 150 128
'SOX9 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.717 (Fisher's exact test), Q value = 0.99

Table S64.  Gene #6: 'SOX9 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
SOX9 MUTATED 11 11 4
SOX9 WILD-TYPE 171 122 68
'SOX9 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00277 (Fisher's exact test), Q value = 0.047

Table S65.  Gene #6: 'SOX9 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
SOX9 MUTATED 7 18 6 10
SOX9 WILD-TYPE 105 78 86 176

Figure S37.  Get High-res Image Gene #6: 'SOX9 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'SOX9 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0102 (Fisher's exact test), Q value = 0.096

Table S66.  Gene #6: 'SOX9 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
SOX9 MUTATED 4 9 8 6 2 7 5
SOX9 WILD-TYPE 56 41 41 34 61 118 94

Figure S38.  Get High-res Image Gene #6: 'SOX9 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'SOX9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.308 (Fisher's exact test), Q value = 0.64

Table S67.  Gene #6: 'SOX9 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
SOX9 MUTATED 16 6 3 16
SOX9 WILD-TYPE 114 72 65 180
'SOX9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0166 (Fisher's exact test), Q value = 0.13

Table S68.  Gene #6: 'SOX9 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
SOX9 MUTATED 10 6 2 2 6 5 5 2 3
SOX9 WILD-TYPE 30 56 26 78 63 43 38 26 71

Figure S39.  Get High-res Image Gene #6: 'SOX9 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'SOX9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.691 (Fisher's exact test), Q value = 0.97

Table S69.  Gene #6: 'SOX9 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
SOX9 MUTATED 5 2 2 2
SOX9 WILD-TYPE 28 29 25 17
'SOX9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.962 (Fisher's exact test), Q value = 1

Table S70.  Gene #6: 'SOX9 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
SOX9 MUTATED 5 1 3 2
SOX9 WILD-TYPE 49 9 21 20
'FAM123B MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0254 (Fisher's exact test), Q value = 0.16

Table S71.  Gene #7: 'FAM123B MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
FAM123B MUTATED 9 6 2 7
FAM123B WILD-TYPE 37 52 62 36

Figure S40.  Get High-res Image Gene #7: 'FAM123B MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'FAM123B MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.269 (Fisher's exact test), Q value = 0.59

Table S72.  Gene #7: 'FAM123B MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
FAM123B MUTATED 9 7 8
FAM123B WILD-TYPE 42 76 69
'FAM123B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00844 (Fisher's exact test), Q value = 0.086

Table S73.  Gene #7: 'FAM123B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
FAM123B MUTATED 34 16 8 1
FAM123B WILD-TYPE 144 167 93 19

Figure S41.  Get High-res Image Gene #7: 'FAM123B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'FAM123B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00964 (Fisher's exact test), Q value = 0.093

Table S74.  Gene #7: 'FAM123B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
FAM123B MUTATED 7 7 22
FAM123B WILD-TYPE 80 73 78

Figure S42.  Get High-res Image Gene #7: 'FAM123B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'FAM123B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.75 (Fisher's exact test), Q value = 1

Table S75.  Gene #7: 'FAM123B MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
FAM123B MUTATED 8 20 15
FAM123B WILD-TYPE 81 140 123
'FAM123B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.911 (Fisher's exact test), Q value = 1

Table S76.  Gene #7: 'FAM123B MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
FAM123B MUTATED 19 16 8
FAM123B WILD-TYPE 163 117 64
'FAM123B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.339 (Fisher's exact test), Q value = 0.67

Table S77.  Gene #7: 'FAM123B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
FAM123B MUTATED 10 16 13 21
FAM123B WILD-TYPE 102 80 79 165
'FAM123B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0326 (Fisher's exact test), Q value = 0.18

Table S78.  Gene #7: 'FAM123B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
FAM123B MUTATED 6 8 9 5 8 6 18
FAM123B WILD-TYPE 54 42 40 35 55 119 81

Figure S43.  Get High-res Image Gene #7: 'FAM123B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'FAM123B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.74 (Fisher's exact test), Q value = 1

Table S79.  Gene #7: 'FAM123B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
FAM123B MUTATED 16 7 10 26
FAM123B WILD-TYPE 114 71 58 170
'FAM123B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00142 (Fisher's exact test), Q value = 0.031

Table S80.  Gene #7: 'FAM123B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
FAM123B MUTATED 7 9 5 4 18 2 7 3 4
FAM123B WILD-TYPE 33 53 23 76 51 46 36 25 70

Figure S44.  Get High-res Image Gene #7: 'FAM123B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'FAM123B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.63 (Fisher's exact test), Q value = 0.93

Table S81.  Gene #7: 'FAM123B MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
FAM123B MUTATED 4 3 5 1
FAM123B WILD-TYPE 29 28 22 18
'FAM123B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.468 (Fisher's exact test), Q value = 0.79

Table S82.  Gene #7: 'FAM123B MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
FAM123B MUTATED 5 2 2 4
FAM123B WILD-TYPE 49 8 22 18
'ZFP36L2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.131 (Fisher's exact test), Q value = 0.4

Table S83.  Gene #8: 'ZFP36L2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ZFP36L2 MUTATED 11 3 3 0
ZFP36L2 WILD-TYPE 167 180 98 20
'ZFP36L2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.448 (Fisher's exact test), Q value = 0.77

Table S84.  Gene #8: 'ZFP36L2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ZFP36L2 MUTATED 4 3 8
ZFP36L2 WILD-TYPE 83 77 92
'ZFP36L2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.073 (Fisher's exact test), Q value = 0.29

Table S85.  Gene #8: 'ZFP36L2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ZFP36L2 MUTATED 0 8 7
ZFP36L2 WILD-TYPE 89 152 131
'ZFP36L2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.419 (Fisher's exact test), Q value = 0.75

Table S86.  Gene #8: 'ZFP36L2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ZFP36L2 MUTATED 7 7 1
ZFP36L2 WILD-TYPE 175 126 71
'ZFP36L2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0319 (Fisher's exact test), Q value = 0.18

Table S87.  Gene #8: 'ZFP36L2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ZFP36L2 MUTATED 5 3 7 2
ZFP36L2 WILD-TYPE 107 93 85 184

Figure S45.  Get High-res Image Gene #8: 'ZFP36L2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'ZFP36L2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S88.  Gene #8: 'ZFP36L2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ZFP36L2 MUTATED 6 0 8 0 1 2 0
ZFP36L2 WILD-TYPE 54 50 41 40 62 123 99

Figure S46.  Get High-res Image Gene #8: 'ZFP36L2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ZFP36L2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.182 (Fisher's exact test), Q value = 0.48

Table S89.  Gene #8: 'ZFP36L2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ZFP36L2 MUTATED 9 2 1 5
ZFP36L2 WILD-TYPE 121 76 67 191
'ZFP36L2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.307 (Fisher's exact test), Q value = 0.64

Table S90.  Gene #8: 'ZFP36L2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ZFP36L2 MUTATED 0 2 1 5 6 1 1 0 1
ZFP36L2 WILD-TYPE 40 60 27 75 63 47 42 28 73
'ZFP36L2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0143 (Fisher's exact test), Q value = 0.12

Table S91.  Gene #8: 'ZFP36L2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
ZFP36L2 MUTATED 1 0 1 4
ZFP36L2 WILD-TYPE 32 31 26 15

Figure S47.  Get High-res Image Gene #8: 'ZFP36L2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'ZFP36L2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.363 (Fisher's exact test), Q value = 0.69

Table S92.  Gene #8: 'ZFP36L2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
ZFP36L2 MUTATED 2 0 3 1
ZFP36L2 WILD-TYPE 52 10 21 21
'B2M MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0737 (Fisher's exact test), Q value = 0.29

Table S93.  Gene #9: 'B2M MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
B2M MUTATED 2 0 0 2
B2M WILD-TYPE 44 58 64 41
'B2M MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.553 (Fisher's exact test), Q value = 0.87

Table S94.  Gene #9: 'B2M MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
B2M MUTATED 2 1 1
B2M WILD-TYPE 49 82 76
'B2M MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00032 (Fisher's exact test), Q value = 0.011

Table S95.  Gene #9: 'B2M MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
B2M MUTATED 15 2 0 0
B2M WILD-TYPE 163 181 101 20

Figure S48.  Get High-res Image Gene #9: 'B2M MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'B2M MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0129 (Fisher's exact test), Q value = 0.11

Table S96.  Gene #9: 'B2M MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
B2M MUTATED 5 0 9
B2M WILD-TYPE 82 80 91

Figure S49.  Get High-res Image Gene #9: 'B2M MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'B2M MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0318 (Fisher's exact test), Q value = 0.18

Table S97.  Gene #9: 'B2M MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
B2M MUTATED 0 6 9
B2M WILD-TYPE 89 154 129

Figure S50.  Get High-res Image Gene #9: 'B2M MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'B2M MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.573 (Fisher's exact test), Q value = 0.88

Table S98.  Gene #9: 'B2M MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
B2M MUTATED 8 6 1
B2M WILD-TYPE 174 127 71
'B2M MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0682 (Fisher's exact test), Q value = 0.28

Table S99.  Gene #9: 'B2M MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
B2M MUTATED 1 4 7 5
B2M WILD-TYPE 111 92 85 181
'B2M MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00027 (Fisher's exact test), Q value = 0.01

Table S100.  Gene #9: 'B2M MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
B2M MUTATED 1 2 7 0 1 0 6
B2M WILD-TYPE 59 48 42 40 62 125 93

Figure S51.  Get High-res Image Gene #9: 'B2M MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'B2M MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.265 (Fisher's exact test), Q value = 0.59

Table S101.  Gene #9: 'B2M MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
B2M MUTATED 4 4 0 9
B2M WILD-TYPE 126 74 68 187
'B2M MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.187 (Fisher's exact test), Q value = 0.49

Table S102.  Gene #9: 'B2M MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
B2M MUTATED 0 4 2 4 5 0 1 0 1
B2M WILD-TYPE 40 58 26 76 64 48 42 28 73
'B2M MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00156 (Fisher's exact test), Q value = 0.033

Table S103.  Gene #9: 'B2M MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
B2M MUTATED 0 0 1 4
B2M WILD-TYPE 33 31 26 15

Figure S52.  Get High-res Image Gene #9: 'B2M MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'B2M MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.576 (Fisher's exact test), Q value = 0.88

Table S104.  Gene #9: 'B2M MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
B2M MUTATED 3 0 2 0
B2M WILD-TYPE 51 10 22 22
'TXNDC2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.694 (Fisher's exact test), Q value = 0.97

Table S105.  Gene #10: 'TXNDC2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
TXNDC2 MUTATED 11 9 3 1
TXNDC2 WILD-TYPE 167 174 98 19
'TXNDC2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.449 (Fisher's exact test), Q value = 0.78

Table S106.  Gene #10: 'TXNDC2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
TXNDC2 MUTATED 5 9 8
TXNDC2 WILD-TYPE 82 71 92
'TXNDC2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.144 (Fisher's exact test), Q value = 0.42

Table S107.  Gene #10: 'TXNDC2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
TXNDC2 MUTATED 3 5 11
TXNDC2 WILD-TYPE 86 155 127
'TXNDC2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.953 (Fisher's exact test), Q value = 1

Table S108.  Gene #10: 'TXNDC2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
TXNDC2 MUTATED 10 6 3
TXNDC2 WILD-TYPE 172 127 69
'TXNDC2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00366 (Fisher's exact test), Q value = 0.055

Table S109.  Gene #10: 'TXNDC2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
TXNDC2 MUTATED 10 5 7 2
TXNDC2 WILD-TYPE 102 91 85 184

Figure S53.  Get High-res Image Gene #10: 'TXNDC2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'TXNDC2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 9e-05 (Fisher's exact test), Q value = 0.0048

Table S110.  Gene #10: 'TXNDC2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
TXNDC2 MUTATED 4 5 1 4 8 0 2
TXNDC2 WILD-TYPE 56 45 48 36 55 125 97

Figure S54.  Get High-res Image Gene #10: 'TXNDC2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'TXNDC2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00176 (Fisher's exact test), Q value = 0.035

Table S111.  Gene #10: 'TXNDC2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
TXNDC2 MUTATED 14 5 2 3
TXNDC2 WILD-TYPE 116 73 66 193

Figure S55.  Get High-res Image Gene #10: 'TXNDC2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'TXNDC2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00509 (Fisher's exact test), Q value = 0.064

Table S112.  Gene #10: 'TXNDC2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
TXNDC2 MUTATED 7 3 3 3 1 3 3 1 0
TXNDC2 WILD-TYPE 33 59 25 77 68 45 40 27 74

Figure S56.  Get High-res Image Gene #10: 'TXNDC2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'TXNDC2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.097 (Fisher's exact test), Q value = 0.34

Table S113.  Gene #10: 'TXNDC2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
TXNDC2 MUTATED 1 3 0 3
TXNDC2 WILD-TYPE 32 28 27 16
'TXNDC2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.286 (Fisher's exact test), Q value = 0.61

Table S114.  Gene #10: 'TXNDC2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
TXNDC2 MUTATED 6 0 0 1
TXNDC2 WILD-TYPE 48 10 24 21
'ACVR1B MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.362 (Fisher's exact test), Q value = 0.69

Table S115.  Gene #11: 'ACVR1B MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ACVR1B MUTATED 4 2 2 4
ACVR1B WILD-TYPE 42 56 62 39
'ACVR1B MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.115 (Fisher's exact test), Q value = 0.38

Table S116.  Gene #11: 'ACVR1B MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ACVR1B MUTATED 6 4 2
ACVR1B WILD-TYPE 45 79 75
'ACVR1B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00038 (Fisher's exact test), Q value = 0.013

Table S117.  Gene #11: 'ACVR1B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ACVR1B MUTATED 20 4 2 2
ACVR1B WILD-TYPE 158 179 99 18

Figure S57.  Get High-res Image Gene #11: 'ACVR1B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ACVR1B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.333 (Fisher's exact test), Q value = 0.66

Table S118.  Gene #11: 'ACVR1B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ACVR1B MUTATED 7 4 3
ACVR1B WILD-TYPE 80 76 97
'ACVR1B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.294 (Fisher's exact test), Q value = 0.62

Table S119.  Gene #11: 'ACVR1B MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ACVR1B MUTATED 3 9 12
ACVR1B WILD-TYPE 86 151 126
'ACVR1B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.447 (Fisher's exact test), Q value = 0.77

Table S120.  Gene #11: 'ACVR1B MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ACVR1B MUTATED 13 9 2
ACVR1B WILD-TYPE 169 124 70
'ACVR1B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.485 (Fisher's exact test), Q value = 0.81

Table S121.  Gene #11: 'ACVR1B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ACVR1B MUTATED 4 4 7 13
ACVR1B WILD-TYPE 108 92 85 173
'ACVR1B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0781 (Fisher's exact test), Q value = 0.3

Table S122.  Gene #11: 'ACVR1B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ACVR1B MUTATED 4 2 5 1 1 4 11
ACVR1B WILD-TYPE 56 48 44 39 62 121 88
'ACVR1B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.282 (Fisher's exact test), Q value = 0.61

Table S123.  Gene #11: 'ACVR1B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ACVR1B MUTATED 6 8 2 12
ACVR1B WILD-TYPE 124 70 66 184
'ACVR1B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.165 (Fisher's exact test), Q value = 0.46

Table S124.  Gene #11: 'ACVR1B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ACVR1B MUTATED 2 6 1 1 7 4 2 3 2
ACVR1B WILD-TYPE 38 56 27 79 62 44 41 25 72
'ACVR1B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00365 (Fisher's exact test), Q value = 0.055

Table S125.  Gene #11: 'ACVR1B MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
ACVR1B MUTATED 1 0 0 4
ACVR1B WILD-TYPE 32 31 27 15

Figure S58.  Get High-res Image Gene #11: 'ACVR1B MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'ACVR1B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.266 (Fisher's exact test), Q value = 0.59

Table S126.  Gene #11: 'ACVR1B MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
ACVR1B MUTATED 5 0 0 0
ACVR1B WILD-TYPE 49 10 24 22
'CDH1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0036 (Fisher's exact test), Q value = 0.055

Table S127.  Gene #12: 'CDH1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
CDH1 MUTATED 1 0 0 4
CDH1 WILD-TYPE 45 58 64 39

Figure S59.  Get High-res Image Gene #12: 'CDH1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'CDH1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0456 (Fisher's exact test), Q value = 0.23

Table S128.  Gene #12: 'CDH1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
CDH1 MUTATED 3 0 2
CDH1 WILD-TYPE 48 83 75

Figure S60.  Get High-res Image Gene #12: 'CDH1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'CDH1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0553 (Fisher's exact test), Q value = 0.26

Table S129.  Gene #12: 'CDH1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
CDH1 MUTATED 42 24 15 4
CDH1 WILD-TYPE 136 159 86 16
'CDH1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.524 (Fisher's exact test), Q value = 0.85

Table S130.  Gene #12: 'CDH1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
CDH1 MUTATED 28 20 32
CDH1 WILD-TYPE 59 60 68
'CDH1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.117 (Fisher's exact test), Q value = 0.38

Table S131.  Gene #12: 'CDH1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
CDH1 MUTATED 13 27 34
CDH1 WILD-TYPE 76 133 104
'CDH1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.287 (Fisher's exact test), Q value = 0.62

Table S132.  Gene #12: 'CDH1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
CDH1 MUTATED 41 21 12
CDH1 WILD-TYPE 141 112 60
'CDH1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S133.  Gene #12: 'CDH1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
CDH1 MUTATED 26 32 21 7
CDH1 WILD-TYPE 86 64 71 179

Figure S61.  Get High-res Image Gene #12: 'CDH1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'CDH1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S134.  Gene #12: 'CDH1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
CDH1 MUTATED 17 17 18 12 15 1 6
CDH1 WILD-TYPE 43 33 31 28 48 124 93

Figure S62.  Get High-res Image Gene #12: 'CDH1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CDH1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S135.  Gene #12: 'CDH1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
CDH1 MUTATED 51 14 11 9
CDH1 WILD-TYPE 79 64 57 187

Figure S63.  Get High-res Image Gene #12: 'CDH1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'CDH1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S136.  Gene #12: 'CDH1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
CDH1 MUTATED 17 13 6 15 11 9 13 1 0
CDH1 WILD-TYPE 23 49 22 65 58 39 30 27 74

Figure S64.  Get High-res Image Gene #12: 'CDH1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'CDH1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.538 (Fisher's exact test), Q value = 0.86

Table S137.  Gene #12: 'CDH1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
CDH1 MUTATED 7 6 6 7
CDH1 WILD-TYPE 26 25 21 12
'CDH1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.117 (Fisher's exact test), Q value = 0.38

Table S138.  Gene #12: 'CDH1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
CDH1 MUTATED 12 0 9 5
CDH1 WILD-TYPE 42 10 15 17
'MLH1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.22 (Fisher's exact test), Q value = 0.53

Table S139.  Gene #13: 'MLH1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
MLH1 MUTATED 2 1 0 2
MLH1 WILD-TYPE 44 57 64 41
'MLH1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.254 (Fisher's exact test), Q value = 0.58

Table S140.  Gene #13: 'MLH1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
MLH1 MUTATED 3 1 1
MLH1 WILD-TYPE 48 82 76
'MLH1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0479 (Fisher's exact test), Q value = 0.23

Table S141.  Gene #13: 'MLH1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
MLH1 MUTATED 31 17 8 3
MLH1 WILD-TYPE 147 166 93 17

Figure S65.  Get High-res Image Gene #13: 'MLH1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'MLH1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.171 (Fisher's exact test), Q value = 0.47

Table S142.  Gene #13: 'MLH1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
MLH1 MUTATED 18 11 25
MLH1 WILD-TYPE 69 69 75
'MLH1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.671 (Fisher's exact test), Q value = 0.95

Table S143.  Gene #13: 'MLH1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
MLH1 MUTATED 10 24 21
MLH1 WILD-TYPE 79 136 117
'MLH1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.723 (Fisher's exact test), Q value = 0.99

Table S144.  Gene #13: 'MLH1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
MLH1 MUTATED 28 19 8
MLH1 WILD-TYPE 154 114 64
'MLH1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S145.  Gene #13: 'MLH1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
MLH1 MUTATED 15 21 17 6
MLH1 WILD-TYPE 97 75 75 180

Figure S66.  Get High-res Image Gene #13: 'MLH1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'MLH1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S146.  Gene #13: 'MLH1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
MLH1 MUTATED 8 14 13 5 11 3 5
MLH1 WILD-TYPE 52 36 36 35 52 122 94

Figure S67.  Get High-res Image Gene #13: 'MLH1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'MLH1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S147.  Gene #13: 'MLH1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
MLH1 MUTATED 30 15 3 11
MLH1 WILD-TYPE 100 63 65 185

Figure S68.  Get High-res Image Gene #13: 'MLH1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'MLH1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 2e-05 (Fisher's exact test), Q value = 0.0017

Table S148.  Gene #13: 'MLH1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
MLH1 MUTATED 11 15 4 5 10 5 7 2 0
MLH1 WILD-TYPE 29 47 24 75 59 43 36 26 74

Figure S69.  Get High-res Image Gene #13: 'MLH1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'MLH1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.148 (Fisher's exact test), Q value = 0.43

Table S149.  Gene #13: 'MLH1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
MLH1 MUTATED 6 6 1 5
MLH1 WILD-TYPE 27 25 26 14
'MLH1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0786 (Fisher's exact test), Q value = 0.3

Table S150.  Gene #13: 'MLH1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
MLH1 MUTATED 14 1 2 1
MLH1 WILD-TYPE 40 9 22 21
'BCOR MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0384 (Fisher's exact test), Q value = 0.21

Table S151.  Gene #14: 'BCOR MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
BCOR MUTATED 4 0 1 3
BCOR WILD-TYPE 42 58 63 40

Figure S70.  Get High-res Image Gene #14: 'BCOR MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'BCOR MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.309 (Fisher's exact test), Q value = 0.64

Table S152.  Gene #14: 'BCOR MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
BCOR MUTATED 4 2 2
BCOR WILD-TYPE 47 81 75
'BCOR MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00024 (Fisher's exact test), Q value = 0.0094

Table S153.  Gene #14: 'BCOR MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
BCOR MUTATED 20 2 6 2
BCOR WILD-TYPE 158 181 95 18

Figure S71.  Get High-res Image Gene #14: 'BCOR MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'BCOR MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0615 (Fisher's exact test), Q value = 0.27

Table S154.  Gene #14: 'BCOR MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
BCOR MUTATED 9 2 11
BCOR WILD-TYPE 78 78 89
'BCOR MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.315 (Fisher's exact test), Q value = 0.64

Table S155.  Gene #14: 'BCOR MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
BCOR MUTATED 5 8 13
BCOR WILD-TYPE 84 152 125
'BCOR MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.833 (Fisher's exact test), Q value = 1

Table S156.  Gene #14: 'BCOR MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
BCOR MUTATED 14 8 4
BCOR WILD-TYPE 168 125 68
'BCOR MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00863 (Fisher's exact test), Q value = 0.087

Table S157.  Gene #14: 'BCOR MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
BCOR MUTATED 2 7 12 9
BCOR WILD-TYPE 110 89 80 177

Figure S72.  Get High-res Image Gene #14: 'BCOR MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'BCOR MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 7e-04 (Fisher's exact test), Q value = 0.019

Table S158.  Gene #14: 'BCOR MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
BCOR MUTATED 3 4 10 0 4 2 7
BCOR WILD-TYPE 57 46 39 40 59 123 92

Figure S73.  Get High-res Image Gene #14: 'BCOR MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'BCOR MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.155 (Fisher's exact test), Q value = 0.44

Table S159.  Gene #14: 'BCOR MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
BCOR MUTATED 12 6 1 11
BCOR WILD-TYPE 118 72 67 185
'BCOR MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.131 (Fisher's exact test), Q value = 0.4

Table S160.  Gene #14: 'BCOR MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
BCOR MUTATED 1 6 4 5 8 2 2 1 1
BCOR WILD-TYPE 39 56 24 75 61 46 41 27 73
'BCOR MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.106 (Fisher's exact test), Q value = 0.36

Table S161.  Gene #14: 'BCOR MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
BCOR MUTATED 1 2 0 3
BCOR WILD-TYPE 32 29 27 16
'BCOR MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.684 (Fisher's exact test), Q value = 0.96

Table S162.  Gene #14: 'BCOR MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
BCOR MUTATED 4 0 2 0
BCOR WILD-TYPE 50 10 22 22
'SMAD2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0923 (Fisher's exact test), Q value = 0.33

Table S163.  Gene #15: 'SMAD2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
SMAD2 MUTATED 4 2 1 5
SMAD2 WILD-TYPE 42 56 63 38
'SMAD2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.359 (Fisher's exact test), Q value = 0.69

Table S164.  Gene #15: 'SMAD2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
SMAD2 MUTATED 5 3 4
SMAD2 WILD-TYPE 46 80 73
'SMAD2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0127 (Fisher's exact test), Q value = 0.11

Table S165.  Gene #15: 'SMAD2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
SMAD2 MUTATED 12 3 4 3
SMAD2 WILD-TYPE 166 180 97 17

Figure S74.  Get High-res Image Gene #15: 'SMAD2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'SMAD2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.481 (Fisher's exact test), Q value = 0.81

Table S166.  Gene #15: 'SMAD2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
SMAD2 MUTATED 4 1 4
SMAD2 WILD-TYPE 83 79 96
'SMAD2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.433 (Fisher's exact test), Q value = 0.76

Table S167.  Gene #15: 'SMAD2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
SMAD2 MUTATED 2 6 8
SMAD2 WILD-TYPE 87 154 130
'SMAD2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.749 (Fisher's exact test), Q value = 1

Table S168.  Gene #15: 'SMAD2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
SMAD2 MUTATED 7 7 2
SMAD2 WILD-TYPE 175 126 70
'SMAD2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00804 (Fisher's exact test), Q value = 0.084

Table S169.  Gene #15: 'SMAD2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
SMAD2 MUTATED 0 5 3 14
SMAD2 WILD-TYPE 112 91 89 172

Figure S75.  Get High-res Image Gene #15: 'SMAD2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'SMAD2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.195 (Fisher's exact test), Q value = 0.5

Table S170.  Gene #15: 'SMAD2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
SMAD2 MUTATED 1 1 1 2 3 4 10
SMAD2 WILD-TYPE 59 49 48 38 60 121 89
'SMAD2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0537 (Fisher's exact test), Q value = 0.25

Table S171.  Gene #15: 'SMAD2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
SMAD2 MUTATED 4 1 1 15
SMAD2 WILD-TYPE 126 77 67 181
'SMAD2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.674 (Fisher's exact test), Q value = 0.96

Table S172.  Gene #15: 'SMAD2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
SMAD2 MUTATED 0 2 1 2 5 2 2 2 5
SMAD2 WILD-TYPE 40 60 27 78 64 46 41 26 69
'SMAD2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.415 (Fisher's exact test), Q value = 0.74

Table S173.  Gene #15: 'SMAD2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
SMAD2 MUTATED 0 2 1 0
SMAD2 WILD-TYPE 33 29 26 19
'SMAD2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S174.  Gene #15: 'SMAD2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
SMAD2 MUTATED 2 0 1 0
SMAD2 WILD-TYPE 52 10 23 22
'WNT1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.01 (Fisher's exact test), Q value = 0.096

Table S175.  Gene #16: 'WNT1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
WNT1 MUTATED 7 0 0 0
WNT1 WILD-TYPE 171 183 101 20

Figure S76.  Get High-res Image Gene #16: 'WNT1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'WNT1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0655 (Fisher's exact test), Q value = 0.28

Table S176.  Gene #16: 'WNT1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
WNT1 MUTATED 1 0 5
WNT1 WILD-TYPE 86 80 95
'WNT1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.617 (Fisher's exact test), Q value = 0.92

Table S177.  Gene #16: 'WNT1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
WNT1 MUTATED 1 2 4
WNT1 WILD-TYPE 88 158 134
'WNT1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.684 (Fisher's exact test), Q value = 0.96

Table S178.  Gene #16: 'WNT1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
WNT1 MUTATED 4 3 0
WNT1 WILD-TYPE 178 130 72
'WNT1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0109 (Fisher's exact test), Q value = 0.1

Table S179.  Gene #16: 'WNT1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
WNT1 MUTATED 0 5 1 1
WNT1 WILD-TYPE 112 91 91 185

Figure S77.  Get High-res Image Gene #16: 'WNT1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'WNT1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 2e-05 (Fisher's exact test), Q value = 0.0017

Table S180.  Gene #16: 'WNT1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
WNT1 MUTATED 0 0 6 0 0 0 1
WNT1 WILD-TYPE 60 50 43 40 63 125 98

Figure S78.  Get High-res Image Gene #16: 'WNT1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'WNT1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0143 (Fisher's exact test), Q value = 0.12

Table S181.  Gene #16: 'WNT1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
WNT1 MUTATED 6 0 0 1
WNT1 WILD-TYPE 124 78 68 195

Figure S79.  Get High-res Image Gene #16: 'WNT1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'WNT1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0242 (Fisher's exact test), Q value = 0.16

Table S182.  Gene #16: 'WNT1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
WNT1 MUTATED 0 1 0 0 5 0 1 0 0
WNT1 WILD-TYPE 40 61 28 80 64 48 42 28 74

Figure S80.  Get High-res Image Gene #16: 'WNT1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'WNT1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00469 (Fisher's exact test), Q value = 0.062

Table S183.  Gene #16: 'WNT1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
WNT1 MUTATED 0 0 0 3
WNT1 WILD-TYPE 33 31 27 16

Figure S81.  Get High-res Image Gene #16: 'WNT1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'WNT1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.449 (Fisher's exact test), Q value = 0.77

Table S184.  Gene #16: 'WNT1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
WNT1 MUTATED 1 0 2 0
WNT1 WILD-TYPE 53 10 22 22
'FMN2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.724 (Fisher's exact test), Q value = 0.99

Table S185.  Gene #17: 'FMN2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
FMN2 MUTATED 1 2 2 3
FMN2 WILD-TYPE 45 56 62 40
'FMN2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.898 (Fisher's exact test), Q value = 1

Table S186.  Gene #17: 'FMN2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
FMN2 MUTATED 2 4 2
FMN2 WILD-TYPE 49 79 75
'FMN2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0239 (Fisher's exact test), Q value = 0.16

Table S187.  Gene #17: 'FMN2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
FMN2 MUTATED 34 18 9 1
FMN2 WILD-TYPE 144 165 92 19

Figure S82.  Get High-res Image Gene #17: 'FMN2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'FMN2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.416 (Fisher's exact test), Q value = 0.74

Table S188.  Gene #17: 'FMN2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
FMN2 MUTATED 15 16 25
FMN2 WILD-TYPE 72 64 75
'FMN2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00014 (Fisher's exact test), Q value = 0.0066

Table S189.  Gene #17: 'FMN2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
FMN2 MUTATED 2 25 28
FMN2 WILD-TYPE 87 135 110

Figure S83.  Get High-res Image Gene #17: 'FMN2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'FMN2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.248 (Fisher's exact test), Q value = 0.57

Table S190.  Gene #17: 'FMN2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
FMN2 MUTATED 30 19 6
FMN2 WILD-TYPE 152 114 66
'FMN2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S191.  Gene #17: 'FMN2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
FMN2 MUTATED 19 23 16 5
FMN2 WILD-TYPE 93 73 76 181

Figure S84.  Get High-res Image Gene #17: 'FMN2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'FMN2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S192.  Gene #17: 'FMN2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
FMN2 MUTATED 13 7 18 6 10 4 5
FMN2 WILD-TYPE 47 43 31 34 53 121 94

Figure S85.  Get High-res Image Gene #17: 'FMN2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'FMN2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 2e-05 (Fisher's exact test), Q value = 0.0017

Table S193.  Gene #17: 'FMN2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
FMN2 MUTATED 30 13 10 9
FMN2 WILD-TYPE 100 65 58 187

Figure S86.  Get High-res Image Gene #17: 'FMN2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'FMN2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00082 (Fisher's exact test), Q value = 0.021

Table S194.  Gene #17: 'FMN2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
FMN2 MUTATED 7 12 5 5 10 5 13 3 2
FMN2 WILD-TYPE 33 50 23 75 59 43 30 25 72

Figure S87.  Get High-res Image Gene #17: 'FMN2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'FMN2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.127 (Fisher's exact test), Q value = 0.4

Table S195.  Gene #17: 'FMN2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
FMN2 MUTATED 6 5 4 8
FMN2 WILD-TYPE 27 26 23 11
'FMN2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.137 (Fisher's exact test), Q value = 0.41

Table S196.  Gene #17: 'FMN2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
FMN2 MUTATED 13 0 3 7
FMN2 WILD-TYPE 41 10 21 15
'GGT1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.176 (Fisher's exact test), Q value = 0.48

Table S197.  Gene #18: 'GGT1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
GGT1 MUTATED 1 7 2 0
GGT1 WILD-TYPE 177 176 99 20
'GGT1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00091 (Fisher's exact test), Q value = 0.023

Table S198.  Gene #18: 'GGT1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
GGT1 MUTATED 0 8 2
GGT1 WILD-TYPE 87 72 98

Figure S88.  Get High-res Image Gene #18: 'GGT1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'GGT1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.656 (Fisher's exact test), Q value = 0.94

Table S199.  Gene #18: 'GGT1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
GGT1 MUTATED 2 3 5
GGT1 WILD-TYPE 87 157 133
'GGT1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.763 (Fisher's exact test), Q value = 1

Table S200.  Gene #18: 'GGT1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
GGT1 MUTATED 6 3 1
GGT1 WILD-TYPE 176 130 71
'GGT1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00156 (Fisher's exact test), Q value = 0.033

Table S201.  Gene #18: 'GGT1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
GGT1 MUTATED 7 1 2 0
GGT1 WILD-TYPE 105 95 90 186

Figure S89.  Get High-res Image Gene #18: 'GGT1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'GGT1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00035 (Fisher's exact test), Q value = 0.012

Table S202.  Gene #18: 'GGT1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
GGT1 MUTATED 4 1 0 0 5 0 0
GGT1 WILD-TYPE 56 49 49 40 58 125 99

Figure S90.  Get High-res Image Gene #18: 'GGT1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'GGT1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00616 (Fisher's exact test), Q value = 0.072

Table S203.  Gene #18: 'GGT1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
GGT1 MUTATED 4 2 4 0
GGT1 WILD-TYPE 126 76 64 196

Figure S91.  Get High-res Image Gene #18: 'GGT1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'GGT1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.263 (Fisher's exact test), Q value = 0.59

Table S204.  Gene #18: 'GGT1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
GGT1 MUTATED 2 3 0 3 0 1 1 0 0
GGT1 WILD-TYPE 38 59 28 77 69 47 42 28 74
'GGT1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0294 (Fisher's exact test), Q value = 0.18

Table S205.  Gene #18: 'GGT1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
GGT1 MUTATED 0 1 4 0
GGT1 WILD-TYPE 33 30 23 19

Figure S92.  Get High-res Image Gene #18: 'GGT1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'GGT1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0529 (Fisher's exact test), Q value = 0.25

Table S206.  Gene #18: 'GGT1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
GGT1 MUTATED 1 2 2 0
GGT1 WILD-TYPE 53 8 22 22
'STARD3NL MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0119 (Fisher's exact test), Q value = 0.11

Table S207.  Gene #19: 'STARD3NL MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
STARD3NL MUTATED 12 2 1 0
STARD3NL WILD-TYPE 166 181 100 20

Figure S93.  Get High-res Image Gene #19: 'STARD3NL MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'STARD3NL MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.402 (Fisher's exact test), Q value = 0.73

Table S208.  Gene #19: 'STARD3NL MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
STARD3NL MUTATED 4 2 7
STARD3NL WILD-TYPE 83 78 93
'STARD3NL MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.932 (Fisher's exact test), Q value = 1

Table S209.  Gene #19: 'STARD3NL MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
STARD3NL MUTATED 2 5 5
STARD3NL WILD-TYPE 87 155 133
'STARD3NL MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.191 (Fisher's exact test), Q value = 0.49

Table S210.  Gene #19: 'STARD3NL MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
STARD3NL MUTATED 8 4 0
STARD3NL WILD-TYPE 174 129 72
'STARD3NL MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00386 (Fisher's exact test), Q value = 0.056

Table S211.  Gene #19: 'STARD3NL MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
STARD3NL MUTATED 1 8 4 2
STARD3NL WILD-TYPE 111 88 88 184

Figure S94.  Get High-res Image Gene #19: 'STARD3NL MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'STARD3NL MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0154 (Fisher's exact test), Q value = 0.12

Table S212.  Gene #19: 'STARD3NL MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
STARD3NL MUTATED 3 3 4 2 1 0 2
STARD3NL WILD-TYPE 57 47 45 38 62 125 97

Figure S95.  Get High-res Image Gene #19: 'STARD3NL MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'STARD3NL MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00883 (Fisher's exact test), Q value = 0.088

Table S213.  Gene #19: 'STARD3NL MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
STARD3NL MUTATED 10 2 0 3
STARD3NL WILD-TYPE 120 76 68 193

Figure S96.  Get High-res Image Gene #19: 'STARD3NL MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'STARD3NL MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.252 (Fisher's exact test), Q value = 0.58

Table S214.  Gene #19: 'STARD3NL MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
STARD3NL MUTATED 3 3 1 4 3 1 0 0 0
STARD3NL WILD-TYPE 37 59 27 76 66 47 43 28 74
'STARD3NL MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.931 (Fisher's exact test), Q value = 1

Table S215.  Gene #19: 'STARD3NL MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
STARD3NL MUTATED 1 2 1 1
STARD3NL WILD-TYPE 32 29 26 18
'STARD3NL MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.757 (Fisher's exact test), Q value = 1

Table S216.  Gene #19: 'STARD3NL MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
STARD3NL MUTATED 4 0 1 0
STARD3NL WILD-TYPE 50 10 23 22
'SELPLG MUTATION STATUS' versus 'CN_CNMF'

P value = 0.632 (Fisher's exact test), Q value = 0.93

Table S217.  Gene #20: 'SELPLG MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
SELPLG MUTATED 8 8 2 1
SELPLG WILD-TYPE 170 175 99 19
'SELPLG MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.161 (Fisher's exact test), Q value = 0.45

Table S218.  Gene #20: 'SELPLG MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
SELPLG MUTATED 8 6 3
SELPLG WILD-TYPE 79 74 97
'SELPLG MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.226 (Fisher's exact test), Q value = 0.54

Table S219.  Gene #20: 'SELPLG MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
SELPLG MUTATED 2 7 10
SELPLG WILD-TYPE 87 153 128
'SELPLG MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.745 (Fisher's exact test), Q value = 1

Table S220.  Gene #20: 'SELPLG MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
SELPLG MUTATED 10 7 2
SELPLG WILD-TYPE 172 126 70
'SELPLG MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0341 (Fisher's exact test), Q value = 0.19

Table S221.  Gene #20: 'SELPLG MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
SELPLG MUTATED 7 2 7 3
SELPLG WILD-TYPE 105 94 85 183

Figure S97.  Get High-res Image Gene #20: 'SELPLG MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'SELPLG MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 3e-05 (Fisher's exact test), Q value = 0.0022

Table S222.  Gene #20: 'SELPLG MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
SELPLG MUTATED 11 1 2 2 1 1 1
SELPLG WILD-TYPE 49 49 47 38 62 124 98

Figure S98.  Get High-res Image Gene #20: 'SELPLG MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'SELPLG MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0369 (Fisher's exact test), Q value = 0.2

Table S223.  Gene #20: 'SELPLG MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
SELPLG MUTATED 11 1 2 5
SELPLG WILD-TYPE 119 77 66 191

Figure S99.  Get High-res Image Gene #20: 'SELPLG MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'SELPLG MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.8 (Fisher's exact test), Q value = 1

Table S224.  Gene #20: 'SELPLG MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
SELPLG MUTATED 2 3 1 3 3 3 3 0 1
SELPLG WILD-TYPE 38 59 27 77 66 45 40 28 73
'SELPLG MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0254 (Fisher's exact test), Q value = 0.16

Table S225.  Gene #20: 'SELPLG MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
SELPLG MUTATED 3 0 0 3
SELPLG WILD-TYPE 30 31 27 16

Figure S100.  Get High-res Image Gene #20: 'SELPLG MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'SELPLG MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.852 (Fisher's exact test), Q value = 1

Table S226.  Gene #20: 'SELPLG MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
SELPLG MUTATED 3 0 1 2
SELPLG WILD-TYPE 51 10 23 20
'OR4D10 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0083 (Fisher's exact test), Q value = 0.085

Table S227.  Gene #21: 'OR4D10 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
OR4D10 MUTATED 0 0 0 3
OR4D10 WILD-TYPE 46 58 64 40

Figure S101.  Get High-res Image Gene #21: 'OR4D10 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'OR4D10 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.184 (Fisher's exact test), Q value = 0.48

Table S228.  Gene #21: 'OR4D10 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
OR4D10 MUTATED 2 0 1
OR4D10 WILD-TYPE 49 83 76
'OR4D10 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.493 (Fisher's exact test), Q value = 0.82

Table S229.  Gene #21: 'OR4D10 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
OR4D10 MUTATED 9 5 2 0
OR4D10 WILD-TYPE 169 178 99 20
'OR4D10 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.262 (Fisher's exact test), Q value = 0.59

Table S230.  Gene #21: 'OR4D10 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
OR4D10 MUTATED 7 2 4
OR4D10 WILD-TYPE 80 78 96
'OR4D10 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.112 (Fisher's exact test), Q value = 0.37

Table S231.  Gene #21: 'OR4D10 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
OR4D10 MUTATED 1 5 9
OR4D10 WILD-TYPE 88 155 129
'OR4D10 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.941 (Fisher's exact test), Q value = 1

Table S232.  Gene #21: 'OR4D10 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
OR4D10 MUTATED 8 5 2
OR4D10 WILD-TYPE 174 128 70
'OR4D10 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.134 (Fisher's exact test), Q value = 0.41

Table S233.  Gene #21: 'OR4D10 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
OR4D10 MUTATED 3 2 7 4
OR4D10 WILD-TYPE 109 94 85 182
'OR4D10 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0663 (Fisher's exact test), Q value = 0.28

Table S234.  Gene #21: 'OR4D10 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
OR4D10 MUTATED 4 4 2 0 3 1 2
OR4D10 WILD-TYPE 56 46 47 40 60 124 97
'OR4D10 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.333 (Fisher's exact test), Q value = 0.66

Table S235.  Gene #21: 'OR4D10 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
OR4D10 MUTATED 4 5 2 4
OR4D10 WILD-TYPE 126 73 66 192
'OR4D10 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.255 (Fisher's exact test), Q value = 0.58

Table S236.  Gene #21: 'OR4D10 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
OR4D10 MUTATED 2 5 0 1 2 1 3 0 1
OR4D10 WILD-TYPE 38 57 28 79 67 47 40 28 73
'OR4D10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.667 (Fisher's exact test), Q value = 0.95

Table S237.  Gene #21: 'OR4D10 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
OR4D10 MUTATED 1 1 1 2
OR4D10 WILD-TYPE 32 30 26 17
'OR4D10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.634 (Fisher's exact test), Q value = 0.93

Table S238.  Gene #21: 'OR4D10 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
OR4D10 MUTATED 4 0 0 1
OR4D10 WILD-TYPE 50 10 24 21
'NF2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.438 (Fisher's exact test), Q value = 0.76

Table S239.  Gene #22: 'NF2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
NF2 MUTATED 2 0 1 1
NF2 WILD-TYPE 44 58 63 42
'NF2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.553 (Fisher's exact test), Q value = 0.87

Table S240.  Gene #22: 'NF2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
NF2 MUTATED 2 1 1
NF2 WILD-TYPE 49 82 76
'NF2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0366 (Fisher's exact test), Q value = 0.2

Table S241.  Gene #22: 'NF2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
NF2 MUTATED 35 18 13 1
NF2 WILD-TYPE 143 165 88 19

Figure S102.  Get High-res Image Gene #22: 'NF2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'NF2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.185 (Fisher's exact test), Q value = 0.49

Table S242.  Gene #22: 'NF2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
NF2 MUTATED 24 13 25
NF2 WILD-TYPE 63 67 75
'NF2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00045 (Fisher's exact test), Q value = 0.014

Table S243.  Gene #22: 'NF2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
NF2 MUTATED 7 17 34
NF2 WILD-TYPE 82 143 104

Figure S103.  Get High-res Image Gene #22: 'NF2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'NF2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.225 (Fisher's exact test), Q value = 0.54

Table S244.  Gene #22: 'NF2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
NF2 MUTATED 33 18 7
NF2 WILD-TYPE 149 115 65
'NF2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S245.  Gene #22: 'NF2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
NF2 MUTATED 18 23 20 6
NF2 WILD-TYPE 94 73 72 180

Figure S104.  Get High-res Image Gene #22: 'NF2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'NF2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S246.  Gene #22: 'NF2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
NF2 MUTATED 13 12 18 5 14 2 3
NF2 WILD-TYPE 47 38 31 35 49 123 96

Figure S105.  Get High-res Image Gene #22: 'NF2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'NF2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S247.  Gene #22: 'NF2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
NF2 MUTATED 41 12 4 10
NF2 WILD-TYPE 89 66 64 186

Figure S106.  Get High-res Image Gene #22: 'NF2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'NF2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 3e-05 (Fisher's exact test), Q value = 0.0022

Table S248.  Gene #22: 'NF2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
NF2 MUTATED 14 13 4 12 15 3 4 0 2
NF2 WILD-TYPE 26 49 24 68 54 45 39 28 72

Figure S107.  Get High-res Image Gene #22: 'NF2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'NF2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.165 (Fisher's exact test), Q value = 0.46

Table S249.  Gene #22: 'NF2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
NF2 MUTATED 6 5 1 5
NF2 WILD-TYPE 27 26 26 14
'NF2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.257 (Fisher's exact test), Q value = 0.58

Table S250.  Gene #22: 'NF2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
NF2 MUTATED 12 1 3 1
NF2 WILD-TYPE 42 9 21 21
'MAPK6 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.119 (Fisher's exact test), Q value = 0.38

Table S251.  Gene #23: 'MAPK6 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
MAPK6 MUTATED 2 0 0 1
MAPK6 WILD-TYPE 44 58 64 42
'MAPK6 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.183 (Fisher's exact test), Q value = 0.48

Table S252.  Gene #23: 'MAPK6 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
MAPK6 MUTATED 2 0 1
MAPK6 WILD-TYPE 49 83 76
'MAPK6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0723 (Fisher's exact test), Q value = 0.29

Table S253.  Gene #23: 'MAPK6 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
MAPK6 MUTATED 12 3 3 1
MAPK6 WILD-TYPE 166 180 98 19
'MAPK6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.271 (Fisher's exact test), Q value = 0.6

Table S254.  Gene #23: 'MAPK6 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
MAPK6 MUTATED 7 2 7
MAPK6 WILD-TYPE 80 78 93
'MAPK6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.113 (Fisher's exact test), Q value = 0.37

Table S255.  Gene #23: 'MAPK6 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
MAPK6 MUTATED 1 5 9
MAPK6 WILD-TYPE 88 155 129
'MAPK6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.572 (Fisher's exact test), Q value = 0.88

Table S256.  Gene #23: 'MAPK6 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
MAPK6 MUTATED 8 6 1
MAPK6 WILD-TYPE 174 127 71
'MAPK6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.51 (Fisher's exact test), Q value = 0.83

Table S257.  Gene #23: 'MAPK6 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
MAPK6 MUTATED 4 6 4 5
MAPK6 WILD-TYPE 108 90 88 181
'MAPK6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00824 (Fisher's exact test), Q value = 0.085

Table S258.  Gene #23: 'MAPK6 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
MAPK6 MUTATED 2 0 5 4 4 1 3
MAPK6 WILD-TYPE 58 50 44 36 59 124 96

Figure S108.  Get High-res Image Gene #23: 'MAPK6 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'MAPK6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.166 (Fisher's exact test), Q value = 0.46

Table S259.  Gene #23: 'MAPK6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
MAPK6 MUTATED 9 4 1 5
MAPK6 WILD-TYPE 121 74 67 191
'MAPK6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0647 (Fisher's exact test), Q value = 0.28

Table S260.  Gene #23: 'MAPK6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
MAPK6 MUTATED 4 4 0 1 5 0 3 1 1
MAPK6 WILD-TYPE 36 58 28 79 64 48 40 27 73
'MAPK6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.728 (Fisher's exact test), Q value = 1

Table S261.  Gene #23: 'MAPK6 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
MAPK6 MUTATED 2 1 1 2
MAPK6 WILD-TYPE 31 30 26 17
'MAPK6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.787 (Fisher's exact test), Q value = 1

Table S262.  Gene #23: 'MAPK6 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
MAPK6 MUTATED 3 1 1 1
MAPK6 WILD-TYPE 51 9 23 21
'RHOA MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.628 (Fisher's exact test), Q value = 0.92

Table S263.  Gene #24: 'RHOA MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
RHOA MUTATED 1 1 0 1
RHOA WILD-TYPE 45 57 64 42
'RHOA MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.348 (Fisher's exact test), Q value = 0.68

Table S264.  Gene #24: 'RHOA MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
RHOA MUTATED 1 0 2
RHOA WILD-TYPE 50 83 75
'RHOA MUTATION STATUS' versus 'CN_CNMF'

P value = 0.124 (Fisher's exact test), Q value = 0.39

Table S265.  Gene #24: 'RHOA MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
RHOA MUTATED 9 2 2 0
RHOA WILD-TYPE 169 181 99 20
'RHOA MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.604 (Fisher's exact test), Q value = 0.91

Table S266.  Gene #24: 'RHOA MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
RHOA MUTATED 3 1 4
RHOA WILD-TYPE 84 79 96
'RHOA MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S267.  Gene #24: 'RHOA MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
RHOA MUTATED 2 4 3
RHOA WILD-TYPE 87 156 135
'RHOA MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.823 (Fisher's exact test), Q value = 1

Table S268.  Gene #24: 'RHOA MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
RHOA MUTATED 4 4 1
RHOA WILD-TYPE 178 129 71
'RHOA MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.743 (Fisher's exact test), Q value = 1

Table S269.  Gene #24: 'RHOA MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
RHOA MUTATED 3 2 4 4
RHOA WILD-TYPE 109 94 88 182
'RHOA MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.123 (Fisher's exact test), Q value = 0.39

Table S270.  Gene #24: 'RHOA MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
RHOA MUTATED 4 0 3 1 1 1 3
RHOA WILD-TYPE 56 50 46 39 62 124 96
'RHOA MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.844 (Fisher's exact test), Q value = 1

Table S271.  Gene #24: 'RHOA MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
RHOA MUTATED 5 2 1 5
RHOA WILD-TYPE 125 76 67 191
'RHOA MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.834 (Fisher's exact test), Q value = 1

Table S272.  Gene #24: 'RHOA MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
RHOA MUTATED 1 3 1 2 3 0 1 1 1
RHOA WILD-TYPE 39 59 27 78 66 48 42 27 73
'RHOA MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.27 (Fisher's exact test), Q value = 0.59

Table S273.  Gene #24: 'RHOA MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
RHOA MUTATED 1 0 1 2
RHOA WILD-TYPE 32 31 26 17
'RHOA MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.675 (Fisher's exact test), Q value = 0.96

Table S274.  Gene #24: 'RHOA MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
RHOA MUTATED 2 0 2 0
RHOA WILD-TYPE 52 10 22 22
'FAM9A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00485 (Fisher's exact test), Q value = 0.063

Table S275.  Gene #25: 'FAM9A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
FAM9A MUTATED 10 1 0 0
FAM9A WILD-TYPE 168 182 101 20

Figure S109.  Get High-res Image Gene #25: 'FAM9A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'FAM9A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.437 (Fisher's exact test), Q value = 0.76

Table S276.  Gene #25: 'FAM9A MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
FAM9A MUTATED 3 1 5
FAM9A WILD-TYPE 84 79 95
'FAM9A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.512 (Fisher's exact test), Q value = 0.83

Table S277.  Gene #25: 'FAM9A MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
FAM9A MUTATED 1 3 5
FAM9A WILD-TYPE 88 157 133
'FAM9A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.404 (Fisher's exact test), Q value = 0.73

Table S278.  Gene #25: 'FAM9A MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
FAM9A MUTATED 5 4 0
FAM9A WILD-TYPE 177 129 72
'FAM9A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.203 (Fisher's exact test), Q value = 0.51

Table S279.  Gene #25: 'FAM9A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
FAM9A MUTATED 2 4 4 2
FAM9A WILD-TYPE 110 92 88 184
'FAM9A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00076 (Fisher's exact test), Q value = 0.02

Table S280.  Gene #25: 'FAM9A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
FAM9A MUTATED 1 1 7 0 1 1 1
FAM9A WILD-TYPE 59 49 42 40 62 124 98

Figure S110.  Get High-res Image Gene #25: 'FAM9A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'FAM9A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.23 (Fisher's exact test), Q value = 0.55

Table S281.  Gene #25: 'FAM9A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
FAM9A MUTATED 4 4 0 4
FAM9A WILD-TYPE 126 74 68 192
'FAM9A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0537 (Fisher's exact test), Q value = 0.25

Table S282.  Gene #25: 'FAM9A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
FAM9A MUTATED 0 3 0 4 5 0 0 0 0
FAM9A WILD-TYPE 40 59 28 76 64 48 43 28 74
'FAM9A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0251 (Fisher's exact test), Q value = 0.16

Table S283.  Gene #25: 'FAM9A MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
FAM9A MUTATED 3 0 0 3
FAM9A WILD-TYPE 30 31 27 16

Figure S111.  Get High-res Image Gene #25: 'FAM9A MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'FAM9A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.566 (Fisher's exact test), Q value = 0.87

Table S284.  Gene #25: 'FAM9A MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
FAM9A MUTATED 5 0 1 0
FAM9A WILD-TYPE 49 10 23 22
'EGR1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0168 (Fisher's exact test), Q value = 0.13

Table S285.  Gene #26: 'EGR1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
EGR1 MUTATED 10 1 1 0
EGR1 WILD-TYPE 168 182 100 20

Figure S112.  Get High-res Image Gene #26: 'EGR1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'EGR1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.027 (Fisher's exact test), Q value = 0.17

Table S286.  Gene #26: 'EGR1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
EGR1 MUTATED 1 1 8
EGR1 WILD-TYPE 86 79 92

Figure S113.  Get High-res Image Gene #26: 'EGR1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'EGR1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.313 (Fisher's exact test), Q value = 0.64

Table S287.  Gene #26: 'EGR1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
EGR1 MUTATED 0 4 4
EGR1 WILD-TYPE 89 156 134
'EGR1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.641 (Fisher's exact test), Q value = 0.93

Table S288.  Gene #26: 'EGR1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
EGR1 MUTATED 3 4 1
EGR1 WILD-TYPE 179 129 71
'EGR1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00282 (Fisher's exact test), Q value = 0.047

Table S289.  Gene #26: 'EGR1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
EGR1 MUTATED 1 8 1 2
EGR1 WILD-TYPE 111 88 91 184

Figure S114.  Get High-res Image Gene #26: 'EGR1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'EGR1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00036 (Fisher's exact test), Q value = 0.012

Table S290.  Gene #26: 'EGR1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
EGR1 MUTATED 0 2 6 1 0 0 3
EGR1 WILD-TYPE 60 48 43 39 63 125 96

Figure S115.  Get High-res Image Gene #26: 'EGR1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'EGR1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.653 (Fisher's exact test), Q value = 0.94

Table S291.  Gene #26: 'EGR1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
EGR1 MUTATED 5 1 2 4
EGR1 WILD-TYPE 125 77 66 192
'EGR1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0368 (Fisher's exact test), Q value = 0.2

Table S292.  Gene #26: 'EGR1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
EGR1 MUTATED 1 0 0 2 5 0 2 2 0
EGR1 WILD-TYPE 39 62 28 78 64 48 41 26 74

Figure S116.  Get High-res Image Gene #26: 'EGR1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'EGR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0593 (Fisher's exact test), Q value = 0.27

Table S293.  Gene #26: 'EGR1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
EGR1 MUTATED 0 0 1 2
EGR1 WILD-TYPE 33 31 26 17
'EGR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.449 (Fisher's exact test), Q value = 0.77

Table S294.  Gene #26: 'EGR1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
EGR1 MUTATED 1 0 2 0
EGR1 WILD-TYPE 53 10 22 22
'PRKDC MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0212 (Fisher's exact test), Q value = 0.15

Table S295.  Gene #27: 'PRKDC MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
PRKDC MUTATED 6 1 1 4
PRKDC WILD-TYPE 40 57 63 39

Figure S117.  Get High-res Image Gene #27: 'PRKDC MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'PRKDC MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0259 (Fisher's exact test), Q value = 0.16

Table S296.  Gene #27: 'PRKDC MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
PRKDC MUTATED 7 3 2
PRKDC WILD-TYPE 44 80 75

Figure S118.  Get High-res Image Gene #27: 'PRKDC MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'PRKDC MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00292 (Fisher's exact test), Q value = 0.048

Table S297.  Gene #27: 'PRKDC MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
PRKDC MUTATED 39 15 14 2
PRKDC WILD-TYPE 139 168 87 18

Figure S119.  Get High-res Image Gene #27: 'PRKDC MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'PRKDC MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.538 (Fisher's exact test), Q value = 0.86

Table S298.  Gene #27: 'PRKDC MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
PRKDC MUTATED 21 14 23
PRKDC WILD-TYPE 66 66 77
'PRKDC MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.209 (Fisher's exact test), Q value = 0.52

Table S299.  Gene #27: 'PRKDC MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
PRKDC MUTATED 10 22 27
PRKDC WILD-TYPE 79 138 111
'PRKDC MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.519 (Fisher's exact test), Q value = 0.84

Table S300.  Gene #27: 'PRKDC MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
PRKDC MUTATED 31 20 8
PRKDC WILD-TYPE 151 113 64
'PRKDC MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00048 (Fisher's exact test), Q value = 0.015

Table S301.  Gene #27: 'PRKDC MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
PRKDC MUTATED 17 23 17 13
PRKDC WILD-TYPE 95 73 75 173

Figure S120.  Get High-res Image Gene #27: 'PRKDC MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'PRKDC MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S302.  Gene #27: 'PRKDC MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
PRKDC MUTATED 14 10 21 4 8 3 10
PRKDC WILD-TYPE 46 40 28 36 55 122 89

Figure S121.  Get High-res Image Gene #27: 'PRKDC MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'PRKDC MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00047 (Fisher's exact test), Q value = 0.015

Table S303.  Gene #27: 'PRKDC MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
PRKDC MUTATED 32 13 5 18
PRKDC WILD-TYPE 98 65 63 178

Figure S122.  Get High-res Image Gene #27: 'PRKDC MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'PRKDC MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00454 (Fisher's exact test), Q value = 0.061

Table S304.  Gene #27: 'PRKDC MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
PRKDC MUTATED 10 13 6 9 13 3 9 2 3
PRKDC WILD-TYPE 30 49 22 71 56 45 34 26 71

Figure S123.  Get High-res Image Gene #27: 'PRKDC MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'PRKDC MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.243 (Fisher's exact test), Q value = 0.57

Table S305.  Gene #27: 'PRKDC MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
PRKDC MUTATED 7 3 4 6
PRKDC WILD-TYPE 26 28 23 13
'PRKDC MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.271 (Fisher's exact test), Q value = 0.6

Table S306.  Gene #27: 'PRKDC MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
PRKDC MUTATED 12 2 5 1
PRKDC WILD-TYPE 42 8 19 21
'RPTN MUTATION STATUS' versus 'CN_CNMF'

P value = 0.502 (Fisher's exact test), Q value = 0.83

Table S307.  Gene #28: 'RPTN MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
RPTN MUTATED 8 4 4 1
RPTN WILD-TYPE 170 179 97 19
'RPTN MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.787 (Fisher's exact test), Q value = 1

Table S308.  Gene #28: 'RPTN MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
RPTN MUTATED 6 4 8
RPTN WILD-TYPE 81 76 92
'RPTN MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S309.  Gene #28: 'RPTN MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
RPTN MUTATED 3 7 6
RPTN WILD-TYPE 86 153 132
'RPTN MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.707 (Fisher's exact test), Q value = 0.98

Table S310.  Gene #28: 'RPTN MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
RPTN MUTATED 9 4 3
RPTN WILD-TYPE 173 129 69
'RPTN MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00018 (Fisher's exact test), Q value = 0.0078

Table S311.  Gene #28: 'RPTN MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
RPTN MUTATED 5 5 8 0
RPTN WILD-TYPE 107 91 84 186

Figure S124.  Get High-res Image Gene #28: 'RPTN MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'RPTN MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-04 (Fisher's exact test), Q value = 0.0052

Table S312.  Gene #28: 'RPTN MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
RPTN MUTATED 5 1 4 2 6 0 0
RPTN WILD-TYPE 55 49 45 38 57 125 99

Figure S125.  Get High-res Image Gene #28: 'RPTN MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'RPTN MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 2e-05 (Fisher's exact test), Q value = 0.0017

Table S313.  Gene #28: 'RPTN MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
RPTN MUTATED 9 8 1 0
RPTN WILD-TYPE 121 70 67 196

Figure S126.  Get High-res Image Gene #28: 'RPTN MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'RPTN MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0892 (Fisher's exact test), Q value = 0.32

Table S314.  Gene #28: 'RPTN MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
RPTN MUTATED 3 6 0 2 2 3 1 1 0
RPTN WILD-TYPE 37 56 28 78 67 45 42 27 74
'RPTN MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.35 (Fisher's exact test), Q value = 0.68

Table S315.  Gene #28: 'RPTN MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
RPTN MUTATED 3 1 1 3
RPTN WILD-TYPE 30 30 26 16
'RPTN MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.308 (Fisher's exact test), Q value = 0.64

Table S316.  Gene #28: 'RPTN MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
RPTN MUTATED 6 0 0 2
RPTN WILD-TYPE 48 10 24 20
'THOC7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.458 (Fisher's exact test), Q value = 0.78

Table S317.  Gene #29: 'THOC7 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
THOC7 MUTATED 3 7 1 0
THOC7 WILD-TYPE 175 176 100 20
'THOC7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.175 (Fisher's exact test), Q value = 0.47

Table S318.  Gene #29: 'THOC7 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
THOC7 MUTATED 6 1 3
THOC7 WILD-TYPE 81 79 97
'THOC7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.631 (Fisher's exact test), Q value = 0.93

Table S319.  Gene #29: 'THOC7 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
THOC7 MUTATED 1 5 5
THOC7 WILD-TYPE 88 155 133
'THOC7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.284 (Fisher's exact test), Q value = 0.61

Table S320.  Gene #29: 'THOC7 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
THOC7 MUTATED 6 5 0
THOC7 WILD-TYPE 176 128 72
'THOC7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0552 (Fisher's exact test), Q value = 0.26

Table S321.  Gene #29: 'THOC7 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
THOC7 MUTATED 3 2 5 1
THOC7 WILD-TYPE 109 94 87 185
'THOC7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0411 (Fisher's exact test), Q value = 0.21

Table S322.  Gene #29: 'THOC7 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
THOC7 MUTATED 3 1 0 1 4 0 2
THOC7 WILD-TYPE 57 49 49 39 59 125 97

Figure S127.  Get High-res Image Gene #29: 'THOC7 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'THOC7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00984 (Fisher's exact test), Q value = 0.094

Table S323.  Gene #29: 'THOC7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
THOC7 MUTATED 4 5 0 1
THOC7 WILD-TYPE 126 73 68 195

Figure S128.  Get High-res Image Gene #29: 'THOC7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'THOC7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0123 (Fisher's exact test), Q value = 0.11

Table S324.  Gene #29: 'THOC7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
THOC7 MUTATED 0 5 2 0 1 1 1 0 0
THOC7 WILD-TYPE 40 57 26 80 68 47 42 28 74

Figure S129.  Get High-res Image Gene #29: 'THOC7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'THOC7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.152 (Fisher's exact test), Q value = 0.44

Table S325.  Gene #29: 'THOC7 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
THOC7 MUTATED 2 4 0 0
THOC7 WILD-TYPE 31 27 27 19
'THOC7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.569 (Fisher's exact test), Q value = 0.88

Table S326.  Gene #29: 'THOC7 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
THOC7 MUTATED 5 0 1 0
THOC7 WILD-TYPE 49 10 23 22
'NF1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00321 (Fisher's exact test), Q value = 0.051

Table S327.  Gene #30: 'NF1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
NF1 MUTATED 3 0 1 6
NF1 WILD-TYPE 43 58 63 37

Figure S130.  Get High-res Image Gene #30: 'NF1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'NF1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.322 (Fisher's exact test), Q value = 0.65

Table S328.  Gene #30: 'NF1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
NF1 MUTATED 4 2 4
NF1 WILD-TYPE 47 81 73
'NF1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.416 (Fisher's exact test), Q value = 0.74

Table S329.  Gene #30: 'NF1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
NF1 MUTATED 46 34 23 4
NF1 WILD-TYPE 132 149 78 16
'NF1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.215 (Fisher's exact test), Q value = 0.52

Table S330.  Gene #30: 'NF1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
NF1 MUTATED 35 23 40
NF1 WILD-TYPE 52 57 60
'NF1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00577 (Fisher's exact test), Q value = 0.069

Table S331.  Gene #30: 'NF1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
NF1 MUTATED 11 36 42
NF1 WILD-TYPE 78 124 96

Figure S131.  Get High-res Image Gene #30: 'NF1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'NF1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0249 (Fisher's exact test), Q value = 0.16

Table S332.  Gene #30: 'NF1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
NF1 MUTATED 53 25 11
NF1 WILD-TYPE 129 108 61

Figure S132.  Get High-res Image Gene #30: 'NF1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'NF1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S333.  Gene #30: 'NF1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
NF1 MUTATED 31 38 27 11
NF1 WILD-TYPE 81 58 65 175

Figure S133.  Get High-res Image Gene #30: 'NF1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'NF1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S334.  Gene #30: 'NF1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
NF1 MUTATED 23 19 23 15 17 3 7
NF1 WILD-TYPE 37 31 26 25 46 122 92

Figure S134.  Get High-res Image Gene #30: 'NF1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'NF1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S335.  Gene #30: 'NF1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
NF1 MUTATED 63 21 13 9
NF1 WILD-TYPE 67 57 55 187

Figure S135.  Get High-res Image Gene #30: 'NF1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'NF1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S336.  Gene #30: 'NF1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
NF1 MUTATED 16 19 10 21 13 6 16 3 2
NF1 WILD-TYPE 24 43 18 59 56 42 27 25 72

Figure S136.  Get High-res Image Gene #30: 'NF1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'NF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.931 (Fisher's exact test), Q value = 1

Table S337.  Gene #30: 'NF1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
NF1 MUTATED 10 9 10 6
NF1 WILD-TYPE 23 22 17 13
'NF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0712 (Fisher's exact test), Q value = 0.29

Table S338.  Gene #30: 'NF1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
NF1 MUTATED 17 3 12 3
NF1 WILD-TYPE 37 7 12 19
'FBXW7 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.047 (Fisher's exact test), Q value = 0.23

Table S339.  Gene #31: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
FBXW7 MUTATED 13 6 7 9
FBXW7 WILD-TYPE 33 52 57 34

Figure S137.  Get High-res Image Gene #31: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'FBXW7 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00707 (Fisher's exact test), Q value = 0.077

Table S340.  Gene #31: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
FBXW7 MUTATED 16 9 10
FBXW7 WILD-TYPE 35 74 67

Figure S138.  Get High-res Image Gene #31: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'FBXW7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00011 (Fisher's exact test), Q value = 0.0056

Table S341.  Gene #31: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
FBXW7 MUTATED 64 29 32 5
FBXW7 WILD-TYPE 114 154 69 15

Figure S139.  Get High-res Image Gene #31: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'FBXW7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.459 (Fisher's exact test), Q value = 0.79

Table S342.  Gene #31: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
FBXW7 MUTATED 30 24 39
FBXW7 WILD-TYPE 57 56 61
'FBXW7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00201 (Fisher's exact test), Q value = 0.038

Table S343.  Gene #31: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
FBXW7 MUTATED 17 37 53
FBXW7 WILD-TYPE 72 123 85

Figure S140.  Get High-res Image Gene #31: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'FBXW7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.575 (Fisher's exact test), Q value = 0.88

Table S344.  Gene #31: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
FBXW7 MUTATED 55 34 18
FBXW7 WILD-TYPE 127 99 54
'FBXW7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00469 (Fisher's exact test), Q value = 0.062

Table S345.  Gene #31: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
FBXW7 MUTATED 30 33 33 35
FBXW7 WILD-TYPE 82 63 59 151

Figure S141.  Get High-res Image Gene #31: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'FBXW7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S346.  Gene #31: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
FBXW7 MUTATED 23 12 25 13 19 14 25
FBXW7 WILD-TYPE 37 38 24 27 44 111 74

Figure S142.  Get High-res Image Gene #31: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'FBXW7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00655 (Fisher's exact test), Q value = 0.074

Table S347.  Gene #31: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
FBXW7 MUTATED 50 22 14 43
FBXW7 WILD-TYPE 80 56 54 153

Figure S143.  Get High-res Image Gene #31: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'FBXW7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00271 (Fisher's exact test), Q value = 0.046

Table S348.  Gene #31: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
FBXW7 MUTATED 11 21 14 20 28 9 10 5 11
FBXW7 WILD-TYPE 29 41 14 60 41 39 33 23 63

Figure S144.  Get High-res Image Gene #31: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'FBXW7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.298 (Fisher's exact test), Q value = 0.63

Table S349.  Gene #31: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
FBXW7 MUTATED 9 10 8 10
FBXW7 WILD-TYPE 24 21 19 9
'FBXW7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0442 (Fisher's exact test), Q value = 0.22

Table S350.  Gene #31: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
FBXW7 MUTATED 14 1 11 11
FBXW7 WILD-TYPE 40 9 13 11

Figure S145.  Get High-res Image Gene #31: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

'CHUK MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0157 (Fisher's exact test), Q value = 0.12

Table S351.  Gene #32: 'CHUK MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
CHUK MUTATED 1 0 0 3
CHUK WILD-TYPE 45 58 64 40

Figure S146.  Get High-res Image Gene #32: 'CHUK MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'CHUK MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.555 (Fisher's exact test), Q value = 0.87

Table S352.  Gene #32: 'CHUK MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
CHUK MUTATED 2 1 1
CHUK WILD-TYPE 49 82 76
'CHUK MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0311 (Fisher's exact test), Q value = 0.18

Table S353.  Gene #32: 'CHUK MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
CHUK MUTATED 14 3 5 1
CHUK WILD-TYPE 164 180 96 19

Figure S147.  Get High-res Image Gene #32: 'CHUK MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'CHUK MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0209 (Fisher's exact test), Q value = 0.15

Table S354.  Gene #32: 'CHUK MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
CHUK MUTATED 10 1 8
CHUK WILD-TYPE 77 79 92

Figure S148.  Get High-res Image Gene #32: 'CHUK MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'CHUK MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.545 (Fisher's exact test), Q value = 0.86

Table S355.  Gene #32: 'CHUK MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
CHUK MUTATED 3 11 8
CHUK WILD-TYPE 86 149 130
'CHUK MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.161 (Fisher's exact test), Q value = 0.45

Table S356.  Gene #32: 'CHUK MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
CHUK MUTATED 15 5 2
CHUK WILD-TYPE 167 128 70
'CHUK MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.155 (Fisher's exact test), Q value = 0.44

Table S357.  Gene #32: 'CHUK MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
CHUK MUTATED 5 8 6 5
CHUK WILD-TYPE 107 88 86 181
'CHUK MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00442 (Fisher's exact test), Q value = 0.061

Table S358.  Gene #32: 'CHUK MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
CHUK MUTATED 5 4 4 1 6 0 4
CHUK WILD-TYPE 55 46 45 39 57 125 95

Figure S149.  Get High-res Image Gene #32: 'CHUK MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CHUK MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0756 (Fisher's exact test), Q value = 0.3

Table S359.  Gene #32: 'CHUK MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
CHUK MUTATED 11 5 2 5
CHUK WILD-TYPE 119 73 66 191
'CHUK MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.135 (Fisher's exact test), Q value = 0.41

Table S360.  Gene #32: 'CHUK MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
CHUK MUTATED 1 6 4 4 4 1 2 0 1
CHUK WILD-TYPE 39 56 24 76 65 47 41 28 73
'CHUK MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.629 (Fisher's exact test), Q value = 0.93

Table S361.  Gene #32: 'CHUK MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
CHUK MUTATED 2 4 1 2
CHUK WILD-TYPE 31 27 26 17
'CHUK MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.498 (Fisher's exact test), Q value = 0.82

Table S362.  Gene #32: 'CHUK MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
CHUK MUTATED 4 2 2 1
CHUK WILD-TYPE 50 8 22 21
'ATXN3L MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.121 (Fisher's exact test), Q value = 0.39

Table S363.  Gene #33: 'ATXN3L MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ATXN3L MUTATED 1 1 0 3
ATXN3L WILD-TYPE 45 57 64 40
'ATXN3L MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.639 (Fisher's exact test), Q value = 0.93

Table S364.  Gene #33: 'ATXN3L MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ATXN3L MUTATED 2 1 2
ATXN3L WILD-TYPE 49 82 75
'ATXN3L MUTATION STATUS' versus 'CN_CNMF'

P value = 0.452 (Fisher's exact test), Q value = 0.78

Table S365.  Gene #33: 'ATXN3L MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ATXN3L MUTATED 10 7 2 1
ATXN3L WILD-TYPE 168 176 99 19
'ATXN3L MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.947 (Fisher's exact test), Q value = 1

Table S366.  Gene #33: 'ATXN3L MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ATXN3L MUTATED 5 5 5
ATXN3L WILD-TYPE 82 75 95
'ATXN3L MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.185 (Fisher's exact test), Q value = 0.49

Table S367.  Gene #33: 'ATXN3L MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ATXN3L MUTATED 8 6 6
ATXN3L WILD-TYPE 81 154 132
'ATXN3L MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.136 (Fisher's exact test), Q value = 0.41

Table S368.  Gene #33: 'ATXN3L MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ATXN3L MUTATED 13 3 4
ATXN3L WILD-TYPE 169 130 68
'ATXN3L MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.323 (Fisher's exact test), Q value = 0.65

Table S369.  Gene #33: 'ATXN3L MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ATXN3L MUTATED 3 4 7 6
ATXN3L WILD-TYPE 109 92 85 180
'ATXN3L MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.172 (Fisher's exact test), Q value = 0.47

Table S370.  Gene #33: 'ATXN3L MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ATXN3L MUTATED 4 1 4 1 5 2 3
ATXN3L WILD-TYPE 56 49 45 39 58 123 96
'ATXN3L MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0022 (Fisher's exact test), Q value = 0.04

Table S371.  Gene #33: 'ATXN3L MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ATXN3L MUTATED 9 7 0 3
ATXN3L WILD-TYPE 121 71 68 193

Figure S150.  Get High-res Image Gene #33: 'ATXN3L MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'ATXN3L MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0468 (Fisher's exact test), Q value = 0.23

Table S372.  Gene #33: 'ATXN3L MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ATXN3L MUTATED 2 7 1 3 3 1 0 2 0
ATXN3L WILD-TYPE 38 55 27 77 66 47 43 26 74

Figure S151.  Get High-res Image Gene #33: 'ATXN3L MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'ATXN3L MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.343 (Fisher's exact test), Q value = 0.67

Table S373.  Gene #33: 'ATXN3L MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
ATXN3L MUTATED 1 2 0 2
ATXN3L WILD-TYPE 32 29 27 17
'ATXN3L MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.756 (Fisher's exact test), Q value = 1

Table S374.  Gene #33: 'ATXN3L MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
ATXN3L MUTATED 4 0 1 0
ATXN3L WILD-TYPE 50 10 23 22
'MGA MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0917 (Fisher's exact test), Q value = 0.33

Table S375.  Gene #34: 'MGA MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
MGA MUTATED 4 1 1 4
MGA WILD-TYPE 42 57 63 39
'MGA MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.352 (Fisher's exact test), Q value = 0.68

Table S376.  Gene #34: 'MGA MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
MGA MUTATED 4 4 2
MGA WILD-TYPE 47 79 75
'MGA MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S377.  Gene #34: 'MGA MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
MGA MUTATED 31 3 7 2
MGA WILD-TYPE 147 180 94 18

Figure S152.  Get High-res Image Gene #34: 'MGA MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'MGA MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0596 (Fisher's exact test), Q value = 0.27

Table S378.  Gene #34: 'MGA MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
MGA MUTATED 14 4 13
MGA WILD-TYPE 73 76 87
'MGA MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.837 (Fisher's exact test), Q value = 1

Table S379.  Gene #34: 'MGA MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
MGA MUTATED 8 14 15
MGA WILD-TYPE 81 146 123
'MGA MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.947 (Fisher's exact test), Q value = 1

Table S380.  Gene #34: 'MGA MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
MGA MUTATED 18 13 6
MGA WILD-TYPE 164 120 66
'MGA MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00609 (Fisher's exact test), Q value = 0.071

Table S381.  Gene #34: 'MGA MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
MGA MUTATED 4 14 13 12
MGA WILD-TYPE 108 82 79 174

Figure S153.  Get High-res Image Gene #34: 'MGA MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'MGA MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S382.  Gene #34: 'MGA MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
MGA MUTATED 6 5 16 2 2 3 9
MGA WILD-TYPE 54 45 33 38 61 122 90

Figure S154.  Get High-res Image Gene #34: 'MGA MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'MGA MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.3 (Fisher's exact test), Q value = 0.63

Table S383.  Gene #34: 'MGA MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
MGA MUTATED 17 6 4 15
MGA WILD-TYPE 113 72 64 181
'MGA MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00649 (Fisher's exact test), Q value = 0.074

Table S384.  Gene #34: 'MGA MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
MGA MUTATED 8 8 4 5 11 1 1 1 3
MGA WILD-TYPE 32 54 24 75 58 47 42 27 71

Figure S155.  Get High-res Image Gene #34: 'MGA MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'MGA MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.83 (Fisher's exact test), Q value = 1

Table S385.  Gene #34: 'MGA MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
MGA MUTATED 3 1 2 1
MGA WILD-TYPE 30 30 25 18
'MGA MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.381 (Fisher's exact test), Q value = 0.71

Table S386.  Gene #34: 'MGA MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
MGA MUTATED 4 0 3 0
MGA WILD-TYPE 50 10 21 22
'TPRKB MUTATION STATUS' versus 'CN_CNMF'

P value = 0.487 (Fisher's exact test), Q value = 0.81

Table S387.  Gene #35: 'TPRKB MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
TPRKB MUTATED 6 2 2 0
TPRKB WILD-TYPE 172 181 99 20
'TPRKB MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.369 (Fisher's exact test), Q value = 0.7

Table S388.  Gene #35: 'TPRKB MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
TPRKB MUTATED 4 1 5
TPRKB WILD-TYPE 83 79 95
'TPRKB MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.732 (Fisher's exact test), Q value = 1

Table S389.  Gene #35: 'TPRKB MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
TPRKB MUTATED 1 3 4
TPRKB WILD-TYPE 88 157 134
'TPRKB MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.895 (Fisher's exact test), Q value = 1

Table S390.  Gene #35: 'TPRKB MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
TPRKB MUTATED 5 2 1
TPRKB WILD-TYPE 177 131 71
'TPRKB MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0059 (Fisher's exact test), Q value = 0.07

Table S391.  Gene #35: 'TPRKB MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
TPRKB MUTATED 2 3 5 0
TPRKB WILD-TYPE 110 93 87 186

Figure S156.  Get High-res Image Gene #35: 'TPRKB MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'TPRKB MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00075 (Fisher's exact test), Q value = 0.02

Table S392.  Gene #35: 'TPRKB MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
TPRKB MUTATED 2 1 5 0 2 0 0
TPRKB WILD-TYPE 58 49 44 40 61 125 99

Figure S157.  Get High-res Image Gene #35: 'TPRKB MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'TPRKB MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00225 (Fisher's exact test), Q value = 0.041

Table S393.  Gene #35: 'TPRKB MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
TPRKB MUTATED 4 5 1 0
TPRKB WILD-TYPE 126 73 67 196

Figure S158.  Get High-res Image Gene #35: 'TPRKB MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'TPRKB MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0294 (Fisher's exact test), Q value = 0.18

Table S394.  Gene #35: 'TPRKB MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
TPRKB MUTATED 0 6 0 1 1 1 1 0 0
TPRKB WILD-TYPE 40 56 28 79 68 47 42 28 74

Figure S159.  Get High-res Image Gene #35: 'TPRKB MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'MVK MUTATION STATUS' versus 'CN_CNMF'

P value = 5e-05 (Fisher's exact test), Q value = 0.0032

Table S395.  Gene #36: 'MVK MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
MVK MUTATED 14 0 0 0
MVK WILD-TYPE 164 183 101 20

Figure S160.  Get High-res Image Gene #36: 'MVK MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'MVK MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0217 (Fisher's exact test), Q value = 0.15

Table S396.  Gene #36: 'MVK MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
MVK MUTATED 4 0 8
MVK WILD-TYPE 83 80 92

Figure S161.  Get High-res Image Gene #36: 'MVK MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'MVK MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.108 (Fisher's exact test), Q value = 0.36

Table S397.  Gene #36: 'MVK MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
MVK MUTATED 1 4 9
MVK WILD-TYPE 88 156 129
'MVK MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.145 (Fisher's exact test), Q value = 0.43

Table S398.  Gene #36: 'MVK MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
MVK MUTATED 9 5 0
MVK WILD-TYPE 173 128 72
'MVK MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 6e-04 (Fisher's exact test), Q value = 0.018

Table S399.  Gene #36: 'MVK MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
MVK MUTATED 0 4 8 2
MVK WILD-TYPE 112 92 84 184

Figure S162.  Get High-res Image Gene #36: 'MVK MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'MVK MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S400.  Gene #36: 'MVK MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
MVK MUTATED 0 1 9 0 1 0 3
MVK WILD-TYPE 60 49 40 40 62 125 96

Figure S163.  Get High-res Image Gene #36: 'MVK MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'MVK MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.29 (Fisher's exact test), Q value = 0.62

Table S401.  Gene #36: 'MVK MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
MVK MUTATED 6 3 0 5
MVK WILD-TYPE 124 75 68 191
'MVK MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00012 (Fisher's exact test), Q value = 0.0059

Table S402.  Gene #36: 'MVK MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
MVK MUTATED 1 6 0 0 7 0 0 0 0
MVK WILD-TYPE 39 56 28 80 62 48 43 28 74

Figure S164.  Get High-res Image Gene #36: 'MVK MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'MVK MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0251 (Fisher's exact test), Q value = 0.16

Table S403.  Gene #36: 'MVK MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
MVK MUTATED 2 0 0 3
MVK WILD-TYPE 31 31 27 16

Figure S165.  Get High-res Image Gene #36: 'MVK MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'MVK MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.758 (Fisher's exact test), Q value = 1

Table S404.  Gene #36: 'MVK MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
MVK MUTATED 4 0 1 0
MVK WILD-TYPE 50 10 23 22
'ZBTB20 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00153 (Fisher's exact test), Q value = 0.032

Table S405.  Gene #37: 'ZBTB20 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ZBTB20 MUTATED 5 0 0 2
ZBTB20 WILD-TYPE 41 58 64 41

Figure S166.  Get High-res Image Gene #37: 'ZBTB20 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'ZBTB20 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00477 (Fisher's exact test), Q value = 0.062

Table S406.  Gene #37: 'ZBTB20 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ZBTB20 MUTATED 5 0 2
ZBTB20 WILD-TYPE 46 83 75

Figure S167.  Get High-res Image Gene #37: 'ZBTB20 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'ZBTB20 MUTATION STATUS' versus 'CN_CNMF'

P value = 9e-05 (Fisher's exact test), Q value = 0.0048

Table S407.  Gene #37: 'ZBTB20 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ZBTB20 MUTATED 18 1 2 0
ZBTB20 WILD-TYPE 160 182 99 20

Figure S168.  Get High-res Image Gene #37: 'ZBTB20 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ZBTB20 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00273 (Fisher's exact test), Q value = 0.046

Table S408.  Gene #37: 'ZBTB20 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ZBTB20 MUTATED 2 1 12
ZBTB20 WILD-TYPE 85 79 88

Figure S169.  Get High-res Image Gene #37: 'ZBTB20 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'ZBTB20 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00879 (Fisher's exact test), Q value = 0.087

Table S409.  Gene #37: 'ZBTB20 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ZBTB20 MUTATED 1 4 12
ZBTB20 WILD-TYPE 88 156 126

Figure S170.  Get High-res Image Gene #37: 'ZBTB20 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'ZBTB20 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0815 (Fisher's exact test), Q value = 0.31

Table S410.  Gene #37: 'ZBTB20 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ZBTB20 MUTATED 11 6 0
ZBTB20 WILD-TYPE 171 127 72
'ZBTB20 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0255 (Fisher's exact test), Q value = 0.16

Table S411.  Gene #37: 'ZBTB20 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ZBTB20 MUTATED 1 9 5 7
ZBTB20 WILD-TYPE 111 87 87 179

Figure S171.  Get High-res Image Gene #37: 'ZBTB20 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'ZBTB20 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S412.  Gene #37: 'ZBTB20 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ZBTB20 MUTATED 2 1 12 0 1 0 6
ZBTB20 WILD-TYPE 58 49 37 40 62 125 93

Figure S172.  Get High-res Image Gene #37: 'ZBTB20 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ZBTB20 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0911 (Fisher's exact test), Q value = 0.33

Table S413.  Gene #37: 'ZBTB20 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ZBTB20 MUTATED 9 2 0 11
ZBTB20 WILD-TYPE 121 76 68 185
'ZBTB20 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00011 (Fisher's exact test), Q value = 0.0056

Table S414.  Gene #37: 'ZBTB20 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ZBTB20 MUTATED 1 3 1 2 13 1 0 1 0
ZBTB20 WILD-TYPE 39 59 27 78 56 47 43 27 74

Figure S173.  Get High-res Image Gene #37: 'ZBTB20 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'ZBTB20 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0879 (Fisher's exact test), Q value = 0.32

Table S415.  Gene #37: 'ZBTB20 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
ZBTB20 MUTATED 1 1 0 3
ZBTB20 WILD-TYPE 32 30 27 16
'ZBTB20 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.522 (Fisher's exact test), Q value = 0.84

Table S416.  Gene #37: 'ZBTB20 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
ZBTB20 MUTATED 3 1 1 0
ZBTB20 WILD-TYPE 51 9 23 22
'BCL9 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.049 (Fisher's exact test), Q value = 0.24

Table S417.  Gene #38: 'BCL9 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
BCL9 MUTATED 5 1 1 4
BCL9 WILD-TYPE 41 57 63 39

Figure S174.  Get High-res Image Gene #38: 'BCL9 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'BCL9 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0165 (Fisher's exact test), Q value = 0.13

Table S418.  Gene #38: 'BCL9 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
BCL9 MUTATED 7 2 2
BCL9 WILD-TYPE 44 81 75

Figure S175.  Get High-res Image Gene #38: 'BCL9 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'BCL9 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00055 (Fisher's exact test), Q value = 0.016

Table S419.  Gene #38: 'BCL9 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
BCL9 MUTATED 20 5 1 0
BCL9 WILD-TYPE 158 178 100 20

Figure S176.  Get High-res Image Gene #38: 'BCL9 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'BCL9 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.713 (Fisher's exact test), Q value = 0.98

Table S420.  Gene #38: 'BCL9 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
BCL9 MUTATED 6 3 6
BCL9 WILD-TYPE 81 77 94
'BCL9 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.341 (Fisher's exact test), Q value = 0.67

Table S421.  Gene #38: 'BCL9 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
BCL9 MUTATED 3 8 11
BCL9 WILD-TYPE 86 152 127
'BCL9 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.843 (Fisher's exact test), Q value = 1

Table S422.  Gene #38: 'BCL9 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
BCL9 MUTATED 12 7 3
BCL9 WILD-TYPE 170 126 69
'BCL9 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.936 (Fisher's exact test), Q value = 1

Table S423.  Gene #38: 'BCL9 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
BCL9 MUTATED 5 5 5 12
BCL9 WILD-TYPE 107 91 87 174
'BCL9 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00032 (Fisher's exact test), Q value = 0.011

Table S424.  Gene #38: 'BCL9 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
BCL9 MUTATED 5 1 8 1 1 1 10
BCL9 WILD-TYPE 55 49 41 39 62 124 89

Figure S177.  Get High-res Image Gene #38: 'BCL9 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'BCL9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.545 (Fisher's exact test), Q value = 0.86

Table S425.  Gene #38: 'BCL9 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
BCL9 MUTATED 5 6 5 10
BCL9 WILD-TYPE 125 72 63 186
'BCL9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00133 (Fisher's exact test), Q value = 0.03

Table S426.  Gene #38: 'BCL9 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
BCL9 MUTATED 0 5 2 4 11 1 3 0 0
BCL9 WILD-TYPE 40 57 26 76 58 47 40 28 74

Figure S178.  Get High-res Image Gene #38: 'BCL9 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'BCL9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0799 (Fisher's exact test), Q value = 0.3

Table S427.  Gene #38: 'BCL9 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
BCL9 MUTATED 5 0 2 3
BCL9 WILD-TYPE 28 31 25 16
'BCL9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.575 (Fisher's exact test), Q value = 0.88

Table S428.  Gene #38: 'BCL9 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
BCL9 MUTATED 7 1 1 1
BCL9 WILD-TYPE 47 9 23 21
'ERBB2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.152 (Fisher's exact test), Q value = 0.44

Table S429.  Gene #39: 'ERBB2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ERBB2 MUTATED 3 1 1 4
ERBB2 WILD-TYPE 43 57 63 39
'ERBB2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.139 (Fisher's exact test), Q value = 0.41

Table S430.  Gene #39: 'ERBB2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ERBB2 MUTATED 4 1 4
ERBB2 WILD-TYPE 47 82 73
'ERBB2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.181 (Fisher's exact test), Q value = 0.48

Table S431.  Gene #39: 'ERBB2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ERBB2 MUTATED 14 11 7 4
ERBB2 WILD-TYPE 164 172 94 16
'ERBB2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.283 (Fisher's exact test), Q value = 0.61

Table S432.  Gene #39: 'ERBB2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ERBB2 MUTATED 12 5 10
ERBB2 WILD-TYPE 75 75 90
'ERBB2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0241 (Fisher's exact test), Q value = 0.16

Table S433.  Gene #39: 'ERBB2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ERBB2 MUTATED 4 7 17
ERBB2 WILD-TYPE 85 153 121

Figure S179.  Get High-res Image Gene #39: 'ERBB2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'ERBB2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.324 (Fisher's exact test), Q value = 0.65

Table S434.  Gene #39: 'ERBB2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ERBB2 MUTATED 17 8 3
ERBB2 WILD-TYPE 165 125 69
'ERBB2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00762 (Fisher's exact test), Q value = 0.081

Table S435.  Gene #39: 'ERBB2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ERBB2 MUTATED 6 14 9 7
ERBB2 WILD-TYPE 106 82 83 179

Figure S180.  Get High-res Image Gene #39: 'ERBB2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'ERBB2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00076 (Fisher's exact test), Q value = 0.02

Table S436.  Gene #39: 'ERBB2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ERBB2 MUTATED 5 8 4 7 5 1 6
ERBB2 WILD-TYPE 55 42 45 33 58 124 93

Figure S181.  Get High-res Image Gene #39: 'ERBB2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ERBB2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0873 (Fisher's exact test), Q value = 0.32

Table S437.  Gene #39: 'ERBB2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ERBB2 MUTATED 16 6 5 9
ERBB2 WILD-TYPE 114 72 63 187
'ERBB2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0063 (Fisher's exact test), Q value = 0.073

Table S438.  Gene #39: 'ERBB2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ERBB2 MUTATED 8 7 2 2 7 1 6 1 2
ERBB2 WILD-TYPE 32 55 26 78 62 47 37 27 72

Figure S182.  Get High-res Image Gene #39: 'ERBB2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'ERBB2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.508 (Fisher's exact test), Q value = 0.83

Table S439.  Gene #39: 'ERBB2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
ERBB2 MUTATED 2 3 1 3
ERBB2 WILD-TYPE 31 28 26 16
'ERBB2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.68 (Fisher's exact test), Q value = 0.96

Table S440.  Gene #39: 'ERBB2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
ERBB2 MUTATED 6 1 1 1
ERBB2 WILD-TYPE 48 9 23 21
'P2RY13 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0204 (Fisher's exact test), Q value = 0.14

Table S441.  Gene #40: 'P2RY13 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
P2RY13 MUTATED 10 1 3 1
P2RY13 WILD-TYPE 168 182 98 19

Figure S183.  Get High-res Image Gene #40: 'P2RY13 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'P2RY13 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0103 (Fisher's exact test), Q value = 0.097

Table S442.  Gene #40: 'P2RY13 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
P2RY13 MUTATED 4 0 9
P2RY13 WILD-TYPE 83 80 91

Figure S184.  Get High-res Image Gene #40: 'P2RY13 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'P2RY13 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.603 (Fisher's exact test), Q value = 0.91

Table S443.  Gene #40: 'P2RY13 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
P2RY13 MUTATED 1 4 5
P2RY13 WILD-TYPE 88 156 133
'P2RY13 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.916 (Fisher's exact test), Q value = 1

Table S444.  Gene #40: 'P2RY13 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
P2RY13 MUTATED 5 4 1
P2RY13 WILD-TYPE 177 129 71
'P2RY13 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0799 (Fisher's exact test), Q value = 0.3

Table S445.  Gene #40: 'P2RY13 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
P2RY13 MUTATED 3 6 4 2
P2RY13 WILD-TYPE 109 90 88 184
'P2RY13 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0415 (Fisher's exact test), Q value = 0.21

Table S446.  Gene #40: 'P2RY13 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
P2RY13 MUTATED 3 3 4 2 1 1 1
P2RY13 WILD-TYPE 57 47 45 38 62 124 98

Figure S185.  Get High-res Image Gene #40: 'P2RY13 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'P2RY13 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.21 (Fisher's exact test), Q value = 0.52

Table S447.  Gene #40: 'P2RY13 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
P2RY13 MUTATED 8 2 1 4
P2RY13 WILD-TYPE 122 76 67 192
'P2RY13 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.346 (Fisher's exact test), Q value = 0.67

Table S448.  Gene #40: 'P2RY13 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
P2RY13 MUTATED 2 2 0 5 4 1 1 0 0
P2RY13 WILD-TYPE 38 60 28 75 65 47 42 28 74
'P2RY13 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.874 (Fisher's exact test), Q value = 1

Table S449.  Gene #40: 'P2RY13 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
P2RY13 MUTATED 1 1 0 1
P2RY13 WILD-TYPE 32 30 27 18
'P2RY13 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S450.  Gene #40: 'P2RY13 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
P2RY13 MUTATED 2 0 1 0
P2RY13 WILD-TYPE 52 10 23 22
'ST3GAL6 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0261 (Fisher's exact test), Q value = 0.16

Table S451.  Gene #41: 'ST3GAL6 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ST3GAL6 MUTATED 3 0 0 2
ST3GAL6 WILD-TYPE 43 58 64 41

Figure S186.  Get High-res Image Gene #41: 'ST3GAL6 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'ST3GAL6 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0064 (Fisher's exact test), Q value = 0.074

Table S452.  Gene #41: 'ST3GAL6 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ST3GAL6 MUTATED 4 0 1
ST3GAL6 WILD-TYPE 47 83 76

Figure S187.  Get High-res Image Gene #41: 'ST3GAL6 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'ST3GAL6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00307 (Fisher's exact test), Q value = 0.05

Table S453.  Gene #41: 'ST3GAL6 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ST3GAL6 MUTATED 10 1 0 1
ST3GAL6 WILD-TYPE 168 182 101 19

Figure S188.  Get High-res Image Gene #41: 'ST3GAL6 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ST3GAL6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.124 (Fisher's exact test), Q value = 0.39

Table S454.  Gene #41: 'ST3GAL6 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ST3GAL6 MUTATED 2 0 5
ST3GAL6 WILD-TYPE 85 80 95
'ST3GAL6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.511 (Fisher's exact test), Q value = 0.83

Table S455.  Gene #41: 'ST3GAL6 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ST3GAL6 MUTATED 1 3 5
ST3GAL6 WILD-TYPE 88 157 133
'ST3GAL6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.911 (Fisher's exact test), Q value = 1

Table S456.  Gene #41: 'ST3GAL6 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ST3GAL6 MUTATED 4 3 2
ST3GAL6 WILD-TYPE 178 130 70
'ST3GAL6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.445 (Fisher's exact test), Q value = 0.77

Table S457.  Gene #41: 'ST3GAL6 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ST3GAL6 MUTATED 1 2 4 5
ST3GAL6 WILD-TYPE 111 94 88 181
'ST3GAL6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0194 (Fisher's exact test), Q value = 0.14

Table S458.  Gene #41: 'ST3GAL6 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ST3GAL6 MUTATED 2 0 4 0 2 0 4
ST3GAL6 WILD-TYPE 58 50 45 40 61 125 95

Figure S189.  Get High-res Image Gene #41: 'ST3GAL6 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ST3GAL6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.294 (Fisher's exact test), Q value = 0.62

Table S459.  Gene #41: 'ST3GAL6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ST3GAL6 MUTATED 4 3 0 3
ST3GAL6 WILD-TYPE 126 75 68 193
'ST3GAL6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0453 (Fisher's exact test), Q value = 0.23

Table S460.  Gene #41: 'ST3GAL6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ST3GAL6 MUTATED 0 3 1 1 5 0 0 0 0
ST3GAL6 WILD-TYPE 40 59 27 79 64 48 43 28 74

Figure S190.  Get High-res Image Gene #41: 'ST3GAL6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'ST3GAL6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0847 (Fisher's exact test), Q value = 0.31

Table S461.  Gene #41: 'ST3GAL6 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
ST3GAL6 MUTATED 0 1 0 2
ST3GAL6 WILD-TYPE 33 30 27 17
'ST3GAL6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.693 (Fisher's exact test), Q value = 0.97

Table S462.  Gene #41: 'ST3GAL6 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
ST3GAL6 MUTATED 1 0 1 1
ST3GAL6 WILD-TYPE 53 10 23 21
'IQCD MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.628 (Fisher's exact test), Q value = 0.92

Table S463.  Gene #42: 'IQCD MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
IQCD MUTATED 1 1 0 1
IQCD WILD-TYPE 45 57 64 42
'IQCD MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S464.  Gene #42: 'IQCD MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
IQCD MUTATED 1 1 1
IQCD WILD-TYPE 50 82 76
'IQCD MUTATION STATUS' versus 'CN_CNMF'

P value = 0.069 (Fisher's exact test), Q value = 0.28

Table S465.  Gene #42: 'IQCD MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
IQCD MUTATED 7 2 2 2
IQCD WILD-TYPE 171 181 99 18
'IQCD MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.367 (Fisher's exact test), Q value = 0.7

Table S466.  Gene #42: 'IQCD MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
IQCD MUTATED 4 1 5
IQCD WILD-TYPE 83 79 95
'IQCD MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.796 (Fisher's exact test), Q value = 1

Table S467.  Gene #42: 'IQCD MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
IQCD MUTATED 2 4 5
IQCD WILD-TYPE 87 156 133
'IQCD MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.43 (Fisher's exact test), Q value = 0.76

Table S468.  Gene #42: 'IQCD MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
IQCD MUTATED 4 6 1
IQCD WILD-TYPE 178 127 71
'IQCD MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0752 (Fisher's exact test), Q value = 0.29

Table S469.  Gene #42: 'IQCD MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
IQCD MUTATED 2 6 3 2
IQCD WILD-TYPE 110 90 89 184
'IQCD MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0811 (Fisher's exact test), Q value = 0.31

Table S470.  Gene #42: 'IQCD MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
IQCD MUTATED 3 2 4 1 1 1 1
IQCD WILD-TYPE 57 48 45 39 62 124 98
'IQCD MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.78 (Fisher's exact test), Q value = 1

Table S471.  Gene #42: 'IQCD MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
IQCD MUTATED 4 3 2 4
IQCD WILD-TYPE 126 75 66 192
'IQCD MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.41 (Fisher's exact test), Q value = 0.74

Table S472.  Gene #42: 'IQCD MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
IQCD MUTATED 2 3 0 3 3 0 1 1 0
IQCD WILD-TYPE 38 59 28 77 66 48 42 27 74
'IQCD MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.758 (Fisher's exact test), Q value = 1

Table S473.  Gene #42: 'IQCD MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
IQCD MUTATED 2 1 2 0
IQCD WILD-TYPE 31 30 25 19
'IQCD MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.52 (Fisher's exact test), Q value = 0.84

Table S474.  Gene #42: 'IQCD MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
IQCD MUTATED 3 1 1 0
IQCD WILD-TYPE 51 9 23 22
'PLEKHF2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.451 (Fisher's exact test), Q value = 0.78

Table S475.  Gene #43: 'PLEKHF2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
PLEKHF2 MUTATED 6 3 2 1
PLEKHF2 WILD-TYPE 172 180 99 19
'PLEKHF2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.929 (Fisher's exact test), Q value = 1

Table S476.  Gene #43: 'PLEKHF2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
PLEKHF2 MUTATED 3 4 4
PLEKHF2 WILD-TYPE 84 76 96
'PLEKHF2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.348 (Fisher's exact test), Q value = 0.68

Table S477.  Gene #43: 'PLEKHF2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
PLEKHF2 MUTATED 3 2 5
PLEKHF2 WILD-TYPE 86 158 133
'PLEKHF2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.526 (Fisher's exact test), Q value = 0.85

Table S478.  Gene #43: 'PLEKHF2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
PLEKHF2 MUTATED 5 2 3
PLEKHF2 WILD-TYPE 177 131 69
'PLEKHF2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0467 (Fisher's exact test), Q value = 0.23

Table S479.  Gene #43: 'PLEKHF2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
PLEKHF2 MUTATED 4 5 2 1
PLEKHF2 WILD-TYPE 108 91 90 185

Figure S191.  Get High-res Image Gene #43: 'PLEKHF2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'PLEKHF2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0171 (Fisher's exact test), Q value = 0.13

Table S480.  Gene #43: 'PLEKHF2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
PLEKHF2 MUTATED 2 3 2 3 1 0 1
PLEKHF2 WILD-TYPE 58 47 47 37 62 125 98

Figure S192.  Get High-res Image Gene #43: 'PLEKHF2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'PLEKHF2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0207 (Fisher's exact test), Q value = 0.15

Table S481.  Gene #43: 'PLEKHF2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
PLEKHF2 MUTATED 7 3 1 1
PLEKHF2 WILD-TYPE 123 75 67 195

Figure S193.  Get High-res Image Gene #43: 'PLEKHF2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'PLEKHF2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.335 (Fisher's exact test), Q value = 0.66

Table S482.  Gene #43: 'PLEKHF2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
PLEKHF2 MUTATED 3 1 0 2 2 2 2 0 0
PLEKHF2 WILD-TYPE 37 61 28 78 67 46 41 28 74
'PLEKHF2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.346 (Fisher's exact test), Q value = 0.67

Table S483.  Gene #43: 'PLEKHF2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
PLEKHF2 MUTATED 1 2 0 2
PLEKHF2 WILD-TYPE 32 29 27 17
'PLEKHF2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.216 (Fisher's exact test), Q value = 0.53

Table S484.  Gene #43: 'PLEKHF2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
PLEKHF2 MUTATED 1 1 1 2
PLEKHF2 WILD-TYPE 53 9 23 20
'NR1H3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.308 (Fisher's exact test), Q value = 0.64

Table S485.  Gene #44: 'NR1H3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
NR1H3 MUTATED 1 1 0 2
NR1H3 WILD-TYPE 45 57 64 41
'NR1H3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0607 (Fisher's exact test), Q value = 0.27

Table S486.  Gene #44: 'NR1H3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
NR1H3 MUTATED 3 1 0
NR1H3 WILD-TYPE 48 82 77
'NR1H3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.021 (Fisher's exact test), Q value = 0.15

Table S487.  Gene #44: 'NR1H3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
NR1H3 MUTATED 10 1 3 1
NR1H3 WILD-TYPE 168 182 98 19

Figure S194.  Get High-res Image Gene #44: 'NR1H3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'NR1H3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S488.  Gene #44: 'NR1H3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
NR1H3 MUTATED 4 3 4
NR1H3 WILD-TYPE 83 77 96
'NR1H3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0779 (Fisher's exact test), Q value = 0.3

Table S489.  Gene #44: 'NR1H3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
NR1H3 MUTATED 2 2 8
NR1H3 WILD-TYPE 87 158 130
'NR1H3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.363 (Fisher's exact test), Q value = 0.69

Table S490.  Gene #44: 'NR1H3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
NR1H3 MUTATED 8 2 2
NR1H3 WILD-TYPE 174 131 70
'NR1H3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.388 (Fisher's exact test), Q value = 0.72

Table S491.  Gene #44: 'NR1H3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
NR1H3 MUTATED 5 3 4 3
NR1H3 WILD-TYPE 107 93 88 183
'NR1H3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00817 (Fisher's exact test), Q value = 0.084

Table S492.  Gene #44: 'NR1H3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
NR1H3 MUTATED 2 1 6 2 0 1 3
NR1H3 WILD-TYPE 58 49 43 38 63 124 96

Figure S195.  Get High-res Image Gene #44: 'NR1H3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'NR1H3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0189 (Fisher's exact test), Q value = 0.14

Table S493.  Gene #44: 'NR1H3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
NR1H3 MUTATED 9 2 0 3
NR1H3 WILD-TYPE 121 76 68 193

Figure S196.  Get High-res Image Gene #44: 'NR1H3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'NR1H3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.075 (Fisher's exact test), Q value = 0.29

Table S494.  Gene #44: 'NR1H3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
NR1H3 MUTATED 1 3 1 0 5 2 2 0 0
NR1H3 WILD-TYPE 39 59 27 80 64 46 41 28 74
'NR1H3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00412 (Fisher's exact test), Q value = 0.059

Table S495.  Gene #44: 'NR1H3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
NR1H3 MUTATED 1 0 0 4
NR1H3 WILD-TYPE 32 31 27 15

Figure S197.  Get High-res Image Gene #44: 'NR1H3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'NR1H3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.757 (Fisher's exact test), Q value = 1

Table S496.  Gene #44: 'NR1H3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
NR1H3 MUTATED 4 0 1 0
NR1H3 WILD-TYPE 50 10 23 22
'ALPK2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0107 (Fisher's exact test), Q value = 0.1

Table S497.  Gene #45: 'ALPK2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ALPK2 MUTATED 2 0 1 5
ALPK2 WILD-TYPE 44 58 63 38

Figure S198.  Get High-res Image Gene #45: 'ALPK2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'ALPK2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.309 (Fisher's exact test), Q value = 0.64

Table S498.  Gene #45: 'ALPK2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ALPK2 MUTATED 4 2 2
ALPK2 WILD-TYPE 47 81 75
'ALPK2 MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-04 (Fisher's exact test), Q value = 0.0052

Table S499.  Gene #45: 'ALPK2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ALPK2 MUTATED 32 8 5 1
ALPK2 WILD-TYPE 146 175 96 19

Figure S199.  Get High-res Image Gene #45: 'ALPK2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ALPK2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.367 (Fisher's exact test), Q value = 0.7

Table S500.  Gene #45: 'ALPK2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ALPK2 MUTATED 15 8 15
ALPK2 WILD-TYPE 72 72 85
'ALPK2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0682 (Fisher's exact test), Q value = 0.28

Table S501.  Gene #45: 'ALPK2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ALPK2 MUTATED 4 17 19
ALPK2 WILD-TYPE 85 143 119
'ALPK2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.799 (Fisher's exact test), Q value = 1

Table S502.  Gene #45: 'ALPK2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ALPK2 MUTATED 21 12 7
ALPK2 WILD-TYPE 161 121 65
'ALPK2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00047 (Fisher's exact test), Q value = 0.015

Table S503.  Gene #45: 'ALPK2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ALPK2 MUTATED 8 19 11 8
ALPK2 WILD-TYPE 104 77 81 178

Figure S200.  Get High-res Image Gene #45: 'ALPK2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'ALPK2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S504.  Gene #45: 'ALPK2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ALPK2 MUTATED 5 6 19 4 4 3 5
ALPK2 WILD-TYPE 55 44 30 36 59 122 94

Figure S201.  Get High-res Image Gene #45: 'ALPK2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ALPK2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00234 (Fisher's exact test), Q value = 0.042

Table S505.  Gene #45: 'ALPK2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ALPK2 MUTATED 23 7 2 13
ALPK2 WILD-TYPE 107 71 66 183

Figure S202.  Get High-res Image Gene #45: 'ALPK2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'ALPK2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 7e-05 (Fisher's exact test), Q value = 0.0041

Table S506.  Gene #45: 'ALPK2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ALPK2 MUTATED 4 10 4 7 16 1 2 0 1
ALPK2 WILD-TYPE 36 52 24 73 53 47 41 28 73

Figure S203.  Get High-res Image Gene #45: 'ALPK2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'ALPK2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.128 (Fisher's exact test), Q value = 0.4

Table S507.  Gene #45: 'ALPK2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
ALPK2 MUTATED 2 2 2 5
ALPK2 WILD-TYPE 31 29 25 14
'ALPK2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.28 (Fisher's exact test), Q value = 0.61

Table S508.  Gene #45: 'ALPK2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
ALPK2 MUTATED 5 0 5 1
ALPK2 WILD-TYPE 49 10 19 21
'ASXL1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00971 (Fisher's exact test), Q value = 0.094

Table S509.  Gene #46: 'ASXL1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ASXL1 MUTATED 3 1 0 5
ASXL1 WILD-TYPE 43 57 64 38

Figure S204.  Get High-res Image Gene #46: 'ASXL1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'ASXL1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.338 (Fisher's exact test), Q value = 0.67

Table S510.  Gene #46: 'ASXL1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ASXL1 MUTATED 4 2 3
ASXL1 WILD-TYPE 47 81 74
'ASXL1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00445 (Fisher's exact test), Q value = 0.061

Table S511.  Gene #46: 'ASXL1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ASXL1 MUTATED 26 14 3 3
ASXL1 WILD-TYPE 152 169 98 17

Figure S205.  Get High-res Image Gene #46: 'ASXL1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ASXL1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.464 (Fisher's exact test), Q value = 0.79

Table S512.  Gene #46: 'ASXL1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ASXL1 MUTATED 14 8 15
ASXL1 WILD-TYPE 73 72 85
'ASXL1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.415 (Fisher's exact test), Q value = 0.74

Table S513.  Gene #46: 'ASXL1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ASXL1 MUTATED 6 16 17
ASXL1 WILD-TYPE 83 144 121
'ASXL1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.616 (Fisher's exact test), Q value = 0.91

Table S514.  Gene #46: 'ASXL1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ASXL1 MUTATED 19 15 5
ASXL1 WILD-TYPE 163 118 67
'ASXL1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.019 (Fisher's exact test), Q value = 0.14

Table S515.  Gene #46: 'ASXL1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ASXL1 MUTATED 11 12 14 9
ASXL1 WILD-TYPE 101 84 78 177

Figure S206.  Get High-res Image Gene #46: 'ASXL1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'ASXL1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S516.  Gene #46: 'ASXL1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ASXL1 MUTATED 4 12 9 1 10 2 8
ASXL1 WILD-TYPE 56 38 40 39 53 123 91

Figure S207.  Get High-res Image Gene #46: 'ASXL1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ASXL1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00446 (Fisher's exact test), Q value = 0.061

Table S517.  Gene #46: 'ASXL1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ASXL1 MUTATED 21 10 4 10
ASXL1 WILD-TYPE 109 68 64 186

Figure S208.  Get High-res Image Gene #46: 'ASXL1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'ASXL1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0281 (Fisher's exact test), Q value = 0.17

Table S518.  Gene #46: 'ASXL1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ASXL1 MUTATED 5 10 5 12 3 4 3 1 2
ASXL1 WILD-TYPE 35 52 23 68 66 44 40 27 72

Figure S209.  Get High-res Image Gene #46: 'ASXL1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'ASXL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.708 (Fisher's exact test), Q value = 0.98

Table S519.  Gene #46: 'ASXL1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
ASXL1 MUTATED 5 5 4 5
ASXL1 WILD-TYPE 28 26 23 14
'ASXL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0664 (Fisher's exact test), Q value = 0.28

Table S520.  Gene #46: 'ASXL1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
ASXL1 MUTATED 11 4 1 3
ASXL1 WILD-TYPE 43 6 23 19
'ALG12 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0103 (Fisher's exact test), Q value = 0.097

Table S521.  Gene #47: 'ALG12 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ALG12 MUTATED 7 0 0 0
ALG12 WILD-TYPE 171 183 101 20

Figure S210.  Get High-res Image Gene #47: 'ALG12 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ALG12 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0121 (Fisher's exact test), Q value = 0.11

Table S522.  Gene #47: 'ALG12 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ALG12 MUTATED 0 0 5
ALG12 WILD-TYPE 87 80 95

Figure S211.  Get High-res Image Gene #47: 'ALG12 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'ALG12 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.547 (Fisher's exact test), Q value = 0.87

Table S523.  Gene #47: 'ALG12 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ALG12 MUTATED 2 4 1
ALG12 WILD-TYPE 87 156 137
'ALG12 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.885 (Fisher's exact test), Q value = 1

Table S524.  Gene #47: 'ALG12 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ALG12 MUTATED 3 3 1
ALG12 WILD-TYPE 179 130 71
'ALG12 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0111 (Fisher's exact test), Q value = 0.1

Table S525.  Gene #47: 'ALG12 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ALG12 MUTATED 0 5 0 2
ALG12 WILD-TYPE 112 91 92 184

Figure S212.  Get High-res Image Gene #47: 'ALG12 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'ALG12 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.118 (Fisher's exact test), Q value = 0.38

Table S526.  Gene #47: 'ALG12 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ALG12 MUTATED 0 0 3 1 0 1 2
ALG12 WILD-TYPE 60 50 46 39 63 124 97
'ALG12 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.319 (Fisher's exact test), Q value = 0.65

Table S527.  Gene #47: 'ALG12 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ALG12 MUTATED 4 0 0 3
ALG12 WILD-TYPE 126 78 68 193
'ALG12 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.133 (Fisher's exact test), Q value = 0.41

Table S528.  Gene #47: 'ALG12 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ALG12 MUTATED 1 1 0 0 4 1 0 0 0
ALG12 WILD-TYPE 39 61 28 80 65 47 43 28 74
'PTCH1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00029 (Fisher's exact test), Q value = 0.011

Table S529.  Gene #48: 'PTCH1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
PTCH1 MUTATED 6 0 0 4
PTCH1 WILD-TYPE 40 58 64 39

Figure S213.  Get High-res Image Gene #48: 'PTCH1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'PTCH1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00476 (Fisher's exact test), Q value = 0.062

Table S530.  Gene #48: 'PTCH1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
PTCH1 MUTATED 7 1 2
PTCH1 WILD-TYPE 44 82 75

Figure S214.  Get High-res Image Gene #48: 'PTCH1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'PTCH1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0396 (Fisher's exact test), Q value = 0.21

Table S531.  Gene #48: 'PTCH1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
PTCH1 MUTATED 49 28 20 4
PTCH1 WILD-TYPE 129 155 81 16

Figure S215.  Get High-res Image Gene #48: 'PTCH1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'PTCH1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.285 (Fisher's exact test), Q value = 0.61

Table S532.  Gene #48: 'PTCH1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
PTCH1 MUTATED 34 22 35
PTCH1 WILD-TYPE 53 58 65
'PTCH1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0414 (Fisher's exact test), Q value = 0.21

Table S533.  Gene #48: 'PTCH1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
PTCH1 MUTATED 12 37 38
PTCH1 WILD-TYPE 77 123 100

Figure S216.  Get High-res Image Gene #48: 'PTCH1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'PTCH1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.649 (Fisher's exact test), Q value = 0.94

Table S534.  Gene #48: 'PTCH1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
PTCH1 MUTATED 43 31 13
PTCH1 WILD-TYPE 139 102 59
'PTCH1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S535.  Gene #48: 'PTCH1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
PTCH1 MUTATED 35 30 27 11
PTCH1 WILD-TYPE 77 66 65 175

Figure S217.  Get High-res Image Gene #48: 'PTCH1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'PTCH1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S536.  Gene #48: 'PTCH1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
PTCH1 MUTATED 25 20 24 9 14 1 10
PTCH1 WILD-TYPE 35 30 25 31 49 124 89

Figure S218.  Get High-res Image Gene #48: 'PTCH1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'PTCH1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S537.  Gene #48: 'PTCH1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
PTCH1 MUTATED 59 14 12 17
PTCH1 WILD-TYPE 71 64 56 179

Figure S219.  Get High-res Image Gene #48: 'PTCH1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'PTCH1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S538.  Gene #48: 'PTCH1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
PTCH1 MUTATED 18 15 12 16 16 10 13 1 1
PTCH1 WILD-TYPE 22 47 16 64 53 38 30 27 73

Figure S220.  Get High-res Image Gene #48: 'PTCH1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'PTCH1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.211 (Fisher's exact test), Q value = 0.52

Table S539.  Gene #48: 'PTCH1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
PTCH1 MUTATED 10 6 7 9
PTCH1 WILD-TYPE 23 25 20 10
'PTCH1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.111 (Fisher's exact test), Q value = 0.37

Table S540.  Gene #48: 'PTCH1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
PTCH1 MUTATED 15 0 9 8
PTCH1 WILD-TYPE 39 10 15 14
'GRB2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0647 (Fisher's exact test), Q value = 0.28

Table S541.  Gene #49: 'GRB2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
GRB2 MUTATED 1 0 0 2
GRB2 WILD-TYPE 45 58 64 41
'GRB2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.185 (Fisher's exact test), Q value = 0.49

Table S542.  Gene #49: 'GRB2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
GRB2 MUTATED 2 0 1
GRB2 WILD-TYPE 49 83 76
'GRB2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.263 (Fisher's exact test), Q value = 0.59

Table S543.  Gene #49: 'GRB2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
GRB2 MUTATED 6 5 0 0
GRB2 WILD-TYPE 172 178 101 20
'GRB2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.395 (Fisher's exact test), Q value = 0.72

Table S544.  Gene #49: 'GRB2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
GRB2 MUTATED 2 1 5
GRB2 WILD-TYPE 85 79 95
'GRB2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.384 (Fisher's exact test), Q value = 0.71

Table S545.  Gene #49: 'GRB2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
GRB2 MUTATED 1 6 2
GRB2 WILD-TYPE 88 154 136
'GRB2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.822 (Fisher's exact test), Q value = 1

Table S546.  Gene #49: 'GRB2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
GRB2 MUTATED 4 4 1
GRB2 WILD-TYPE 178 129 71
'GRB2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.57 (Fisher's exact test), Q value = 0.88

Table S547.  Gene #49: 'GRB2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
GRB2 MUTATED 2 4 2 3
GRB2 WILD-TYPE 110 92 90 183
'GRB2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.012 (Fisher's exact test), Q value = 0.11

Table S548.  Gene #49: 'GRB2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
GRB2 MUTATED 2 1 4 2 0 0 2
GRB2 WILD-TYPE 58 49 45 38 63 125 97

Figure S221.  Get High-res Image Gene #49: 'GRB2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'GRB2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.17 (Fisher's exact test), Q value = 0.47

Table S549.  Gene #49: 'GRB2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
GRB2 MUTATED 6 1 1 2
GRB2 WILD-TYPE 124 77 67 194
'GRB2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.18 (Fisher's exact test), Q value = 0.48

Table S550.  Gene #49: 'GRB2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
GRB2 MUTATED 1 0 1 1 4 1 2 0 0
GRB2 WILD-TYPE 39 62 27 79 65 47 41 28 74
'GRB2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.255 (Fisher's exact test), Q value = 0.58

Table S551.  Gene #49: 'GRB2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
GRB2 MUTATED 2 0 0 1
GRB2 WILD-TYPE 31 31 27 18
'GRB2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S552.  Gene #49: 'GRB2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
GRB2 MUTATED 2 0 1 0
GRB2 WILD-TYPE 52 10 23 22
'NLRC4 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00845 (Fisher's exact test), Q value = 0.086

Table S553.  Gene #50: 'NLRC4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
NLRC4 MUTATED 3 0 0 3
NLRC4 WILD-TYPE 43 58 64 40

Figure S222.  Get High-res Image Gene #50: 'NLRC4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'NLRC4 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.239 (Fisher's exact test), Q value = 0.56

Table S554.  Gene #50: 'NLRC4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
NLRC4 MUTATED 3 1 2
NLRC4 WILD-TYPE 48 82 75
'NLRC4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0167 (Fisher's exact test), Q value = 0.13

Table S555.  Gene #50: 'NLRC4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
NLRC4 MUTATED 16 4 4 2
NLRC4 WILD-TYPE 162 179 97 18

Figure S223.  Get High-res Image Gene #50: 'NLRC4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'NLRC4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0712 (Fisher's exact test), Q value = 0.29

Table S556.  Gene #50: 'NLRC4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
NLRC4 MUTATED 10 2 8
NLRC4 WILD-TYPE 77 78 92
'NLRC4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.535 (Fisher's exact test), Q value = 0.85

Table S557.  Gene #50: 'NLRC4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
NLRC4 MUTATED 5 6 9
NLRC4 WILD-TYPE 84 154 129
'NLRC4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.349 (Fisher's exact test), Q value = 0.68

Table S558.  Gene #50: 'NLRC4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
NLRC4 MUTATED 11 4 5
NLRC4 WILD-TYPE 171 129 67
'NLRC4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.17 (Fisher's exact test), Q value = 0.47

Table S559.  Gene #50: 'NLRC4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
NLRC4 MUTATED 4 6 9 7
NLRC4 WILD-TYPE 108 90 83 179
'NLRC4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.016 (Fisher's exact test), Q value = 0.13

Table S560.  Gene #50: 'NLRC4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
NLRC4 MUTATED 4 2 7 3 4 1 5
NLRC4 WILD-TYPE 56 48 42 37 59 124 94

Figure S224.  Get High-res Image Gene #50: 'NLRC4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'NLRC4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.119 (Fisher's exact test), Q value = 0.39

Table S561.  Gene #50: 'NLRC4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
NLRC4 MUTATED 11 6 1 8
NLRC4 WILD-TYPE 119 72 67 188
'NLRC4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S562.  Gene #50: 'NLRC4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
NLRC4 MUTATED 9 6 3 1 6 0 1 0 0
NLRC4 WILD-TYPE 31 56 25 79 63 48 42 28 74

Figure S225.  Get High-res Image Gene #50: 'NLRC4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'NLRC4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0135 (Fisher's exact test), Q value = 0.11

Table S563.  Gene #50: 'NLRC4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
NLRC4 MUTATED 4 0 0 3
NLRC4 WILD-TYPE 29 31 27 16

Figure S226.  Get High-res Image Gene #50: 'NLRC4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'NLRC4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.339 (Fisher's exact test), Q value = 0.67

Table S564.  Gene #50: 'NLRC4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
NLRC4 MUTATED 6 0 1 0
NLRC4 WILD-TYPE 48 10 23 22
'PLAGL2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0214 (Fisher's exact test), Q value = 0.15

Table S565.  Gene #51: 'PLAGL2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
PLAGL2 MUTATED 6 0 0 0
PLAGL2 WILD-TYPE 172 183 101 20

Figure S227.  Get High-res Image Gene #51: 'PLAGL2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'PLAGL2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0652 (Fisher's exact test), Q value = 0.28

Table S566.  Gene #51: 'PLAGL2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
PLAGL2 MUTATED 1 0 5
PLAGL2 WILD-TYPE 86 80 95
'PLAGL2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S567.  Gene #51: 'PLAGL2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
PLAGL2 MUTATED 1 3 2
PLAGL2 WILD-TYPE 88 157 136
'PLAGL2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S568.  Gene #51: 'PLAGL2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
PLAGL2 MUTATED 3 2 1
PLAGL2 WILD-TYPE 179 131 71
'PLAGL2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00014 (Fisher's exact test), Q value = 0.0066

Table S569.  Gene #51: 'PLAGL2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
PLAGL2 MUTATED 0 6 0 0
PLAGL2 WILD-TYPE 112 90 92 186

Figure S228.  Get High-res Image Gene #51: 'PLAGL2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'PLAGL2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 2e-05 (Fisher's exact test), Q value = 0.0017

Table S570.  Gene #51: 'PLAGL2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
PLAGL2 MUTATED 0 0 5 1 0 0 0
PLAGL2 WILD-TYPE 60 50 44 39 63 125 99

Figure S229.  Get High-res Image Gene #51: 'PLAGL2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'PLAGL2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00177 (Fisher's exact test), Q value = 0.035

Table S571.  Gene #51: 'PLAGL2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
PLAGL2 MUTATED 6 0 0 0
PLAGL2 WILD-TYPE 124 78 68 196

Figure S230.  Get High-res Image Gene #51: 'PLAGL2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'PLAGL2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0227 (Fisher's exact test), Q value = 0.15

Table S572.  Gene #51: 'PLAGL2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
PLAGL2 MUTATED 3 0 0 0 2 0 1 0 0
PLAGL2 WILD-TYPE 37 62 28 80 67 48 42 28 74

Figure S231.  Get High-res Image Gene #51: 'PLAGL2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'C11ORF30 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00042 (Fisher's exact test), Q value = 0.014

Table S573.  Gene #52: 'C11ORF30 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
C11ORF30 MUTATED 6 0 0 2
C11ORF30 WILD-TYPE 40 58 64 41

Figure S232.  Get High-res Image Gene #52: 'C11ORF30 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'C11ORF30 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0036 (Fisher's exact test), Q value = 0.055

Table S574.  Gene #52: 'C11ORF30 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
C11ORF30 MUTATED 6 1 1
C11ORF30 WILD-TYPE 45 82 76

Figure S233.  Get High-res Image Gene #52: 'C11ORF30 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'C11ORF30 MUTATION STATUS' versus 'CN_CNMF'

P value = 9e-05 (Fisher's exact test), Q value = 0.0048

Table S575.  Gene #52: 'C11ORF30 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
C11ORF30 MUTATED 19 1 3 0
C11ORF30 WILD-TYPE 159 182 98 20

Figure S234.  Get High-res Image Gene #52: 'C11ORF30 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'C11ORF30 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.279 (Fisher's exact test), Q value = 0.61

Table S576.  Gene #52: 'C11ORF30 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
C11ORF30 MUTATED 5 2 8
C11ORF30 WILD-TYPE 82 78 92
'C11ORF30 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0473 (Fisher's exact test), Q value = 0.23

Table S577.  Gene #52: 'C11ORF30 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
C11ORF30 MUTATED 1 6 11
C11ORF30 WILD-TYPE 88 154 127

Figure S235.  Get High-res Image Gene #52: 'C11ORF30 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'C11ORF30 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.623 (Fisher's exact test), Q value = 0.92

Table S578.  Gene #52: 'C11ORF30 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
C11ORF30 MUTATED 8 8 2
C11ORF30 WILD-TYPE 174 125 70
'C11ORF30 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.189 (Fisher's exact test), Q value = 0.49

Table S579.  Gene #52: 'C11ORF30 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
C11ORF30 MUTATED 2 6 7 8
C11ORF30 WILD-TYPE 110 90 85 178
'C11ORF30 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0142 (Fisher's exact test), Q value = 0.12

Table S580.  Gene #52: 'C11ORF30 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
C11ORF30 MUTATED 3 4 6 0 3 1 6
C11ORF30 WILD-TYPE 57 46 43 40 60 124 93

Figure S236.  Get High-res Image Gene #52: 'C11ORF30 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'C11ORF30 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.182 (Fisher's exact test), Q value = 0.48

Table S581.  Gene #52: 'C11ORF30 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
C11ORF30 MUTATED 8 4 0 10
C11ORF30 WILD-TYPE 122 74 68 186
'C11ORF30 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.787 (Fisher's exact test), Q value = 1

Table S582.  Gene #52: 'C11ORF30 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
C11ORF30 MUTATED 2 3 1 5 5 2 1 2 1
C11ORF30 WILD-TYPE 38 59 27 75 64 46 42 26 73
'C11ORF30 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.645 (Fisher's exact test), Q value = 0.93

Table S583.  Gene #52: 'C11ORF30 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
C11ORF30 MUTATED 1 2 0 1
C11ORF30 WILD-TYPE 32 29 27 18
'C11ORF30 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.672 (Fisher's exact test), Q value = 0.95

Table S584.  Gene #52: 'C11ORF30 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
C11ORF30 MUTATED 2 0 2 0
C11ORF30 WILD-TYPE 52 10 22 22
'DIP2B MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0341 (Fisher's exact test), Q value = 0.19

Table S585.  Gene #53: 'DIP2B MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
DIP2B MUTATED 4 2 0 4
DIP2B WILD-TYPE 42 56 64 39

Figure S237.  Get High-res Image Gene #53: 'DIP2B MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'DIP2B MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0754 (Fisher's exact test), Q value = 0.3

Table S586.  Gene #53: 'DIP2B MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
DIP2B MUTATED 5 4 1
DIP2B WILD-TYPE 46 79 76
'DIP2B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.319 (Fisher's exact test), Q value = 0.65

Table S587.  Gene #53: 'DIP2B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
DIP2B MUTATED 15 8 7 0
DIP2B WILD-TYPE 163 175 94 20
'DIP2B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.25 (Fisher's exact test), Q value = 0.58

Table S588.  Gene #53: 'DIP2B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
DIP2B MUTATED 4 5 11
DIP2B WILD-TYPE 83 75 89
'DIP2B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.283 (Fisher's exact test), Q value = 0.61

Table S589.  Gene #53: 'DIP2B MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
DIP2B MUTATED 3 11 12
DIP2B WILD-TYPE 86 149 126
'DIP2B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.55 (Fisher's exact test), Q value = 0.87

Table S590.  Gene #53: 'DIP2B MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
DIP2B MUTATED 12 11 3
DIP2B WILD-TYPE 170 122 69
'DIP2B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.063 (Fisher's exact test), Q value = 0.27

Table S591.  Gene #53: 'DIP2B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
DIP2B MUTATED 6 12 4 8
DIP2B WILD-TYPE 106 84 88 178
'DIP2B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0374 (Fisher's exact test), Q value = 0.2

Table S592.  Gene #53: 'DIP2B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
DIP2B MUTATED 3 8 6 2 2 4 5
DIP2B WILD-TYPE 57 42 43 38 61 121 94

Figure S238.  Get High-res Image Gene #53: 'DIP2B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'DIP2B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.196 (Fisher's exact test), Q value = 0.5

Table S593.  Gene #53: 'DIP2B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
DIP2B MUTATED 13 3 2 11
DIP2B WILD-TYPE 117 75 66 185
'DIP2B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.17 (Fisher's exact test), Q value = 0.47

Table S594.  Gene #53: 'DIP2B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
DIP2B MUTATED 1 3 3 7 7 1 3 3 1
DIP2B WILD-TYPE 39 59 25 73 62 47 40 25 73
'DIP2B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S595.  Gene #53: 'DIP2B MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
DIP2B MUTATED 1 1 1 1
DIP2B WILD-TYPE 32 30 26 18
'DIP2B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.175 (Fisher's exact test), Q value = 0.47

Table S596.  Gene #53: 'DIP2B MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
DIP2B MUTATED 1 1 2 0
DIP2B WILD-TYPE 53 9 22 22
'PRRG1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.269 (Fisher's exact test), Q value = 0.59

Table S597.  Gene #54: 'PRRG1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
PRRG1 MUTATED 9 3 2 0
PRRG1 WILD-TYPE 169 180 99 20
'PRRG1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.105 (Fisher's exact test), Q value = 0.36

Table S598.  Gene #54: 'PRRG1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
PRRG1 MUTATED 4 1 8
PRRG1 WILD-TYPE 83 79 92
'PRRG1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0413 (Fisher's exact test), Q value = 0.21

Table S599.  Gene #54: 'PRRG1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
PRRG1 MUTATED 0 4 8
PRRG1 WILD-TYPE 89 156 130

Figure S239.  Get High-res Image Gene #54: 'PRRG1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'PRRG1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.247 (Fisher's exact test), Q value = 0.57

Table S600.  Gene #54: 'PRRG1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
PRRG1 MUTATED 7 5 0
PRRG1 WILD-TYPE 175 128 72
'PRRG1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0017 (Fisher's exact test), Q value = 0.034

Table S601.  Gene #54: 'PRRG1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
PRRG1 MUTATED 1 7 5 1
PRRG1 WILD-TYPE 111 89 87 185

Figure S240.  Get High-res Image Gene #54: 'PRRG1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'PRRG1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 2e-05 (Fisher's exact test), Q value = 0.0017

Table S602.  Gene #54: 'PRRG1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
PRRG1 MUTATED 2 2 7 0 3 0 0
PRRG1 WILD-TYPE 58 48 42 40 60 125 99

Figure S241.  Get High-res Image Gene #54: 'PRRG1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'PRRG1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00448 (Fisher's exact test), Q value = 0.061

Table S603.  Gene #54: 'PRRG1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
PRRG1 MUTATED 9 3 1 1
PRRG1 WILD-TYPE 121 75 67 195

Figure S242.  Get High-res Image Gene #54: 'PRRG1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'PRRG1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0216 (Fisher's exact test), Q value = 0.15

Table S604.  Gene #54: 'PRRG1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
PRRG1 MUTATED 0 5 1 1 5 0 2 0 0
PRRG1 WILD-TYPE 40 57 27 79 64 48 41 28 74

Figure S243.  Get High-res Image Gene #54: 'PRRG1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'PRRG1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.194 (Fisher's exact test), Q value = 0.5

Table S605.  Gene #54: 'PRRG1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
PRRG1 MUTATED 0 1 1 2
PRRG1 WILD-TYPE 33 30 26 17
'PRRG1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.175 (Fisher's exact test), Q value = 0.47

Table S606.  Gene #54: 'PRRG1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
PRRG1 MUTATED 1 1 2 0
PRRG1 WILD-TYPE 53 9 22 22
'PIK3R1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.317 (Fisher's exact test), Q value = 0.65

Table S607.  Gene #55: 'PIK3R1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
PIK3R1 MUTATED 2 1 2 4
PIK3R1 WILD-TYPE 44 57 62 39
'PIK3R1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.468 (Fisher's exact test), Q value = 0.79

Table S608.  Gene #55: 'PIK3R1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
PIK3R1 MUTATED 1 3 5
PIK3R1 WILD-TYPE 50 80 72
'PIK3R1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0502 (Fisher's exact test), Q value = 0.24

Table S609.  Gene #55: 'PIK3R1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
PIK3R1 MUTATED 27 15 8 0
PIK3R1 WILD-TYPE 151 168 93 20
'PIK3R1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.406 (Fisher's exact test), Q value = 0.73

Table S610.  Gene #55: 'PIK3R1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
PIK3R1 MUTATED 15 15 12
PIK3R1 WILD-TYPE 72 65 88
'PIK3R1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0183 (Fisher's exact test), Q value = 0.14

Table S611.  Gene #55: 'PIK3R1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
PIK3R1 MUTATED 3 19 20
PIK3R1 WILD-TYPE 86 141 118

Figure S244.  Get High-res Image Gene #55: 'PIK3R1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'PIK3R1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.695 (Fisher's exact test), Q value = 0.97

Table S612.  Gene #55: 'PIK3R1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
PIK3R1 MUTATED 18 17 7
PIK3R1 WILD-TYPE 164 116 65
'PIK3R1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0069 (Fisher's exact test), Q value = 0.076

Table S613.  Gene #55: 'PIK3R1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
PIK3R1 MUTATED 20 10 11 10
PIK3R1 WILD-TYPE 92 86 81 176

Figure S245.  Get High-res Image Gene #55: 'PIK3R1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'PIK3R1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 5e-05 (Fisher's exact test), Q value = 0.0032

Table S614.  Gene #55: 'PIK3R1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
PIK3R1 MUTATED 12 6 13 5 6 4 5
PIK3R1 WILD-TYPE 48 44 36 35 57 121 94

Figure S246.  Get High-res Image Gene #55: 'PIK3R1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'PIK3R1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0167 (Fisher's exact test), Q value = 0.13

Table S615.  Gene #55: 'PIK3R1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
PIK3R1 MUTATED 24 7 6 14
PIK3R1 WILD-TYPE 106 71 62 182

Figure S247.  Get High-res Image Gene #55: 'PIK3R1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'PIK3R1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0294 (Fisher's exact test), Q value = 0.18

Table S616.  Gene #55: 'PIK3R1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
PIK3R1 MUTATED 5 10 5 12 7 4 6 1 1
PIK3R1 WILD-TYPE 35 52 23 68 62 44 37 27 73

Figure S248.  Get High-res Image Gene #55: 'PIK3R1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'PIK3R1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.935 (Fisher's exact test), Q value = 1

Table S617.  Gene #55: 'PIK3R1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
PIK3R1 MUTATED 4 3 3 3
PIK3R1 WILD-TYPE 29 28 24 16
'PIK3R1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.416 (Fisher's exact test), Q value = 0.74

Table S618.  Gene #55: 'PIK3R1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
PIK3R1 MUTATED 4 1 4 4
PIK3R1 WILD-TYPE 50 9 20 18
'PCBP1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.445 (Fisher's exact test), Q value = 0.77

Table S619.  Gene #56: 'PCBP1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
PCBP1 MUTATED 1 1 1 3
PCBP1 WILD-TYPE 45 57 63 40
'PCBP1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.388 (Fisher's exact test), Q value = 0.72

Table S620.  Gene #56: 'PCBP1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
PCBP1 MUTATED 1 1 4
PCBP1 WILD-TYPE 50 82 73
'PCBP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0563 (Fisher's exact test), Q value = 0.26

Table S621.  Gene #56: 'PCBP1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
PCBP1 MUTATED 10 5 0 0
PCBP1 WILD-TYPE 168 178 101 20
'PCBP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.915 (Fisher's exact test), Q value = 1

Table S622.  Gene #56: 'PCBP1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
PCBP1 MUTATED 3 2 4
PCBP1 WILD-TYPE 84 78 96
'PCBP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.831 (Fisher's exact test), Q value = 1

Table S623.  Gene #56: 'PCBP1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
PCBP1 MUTATED 1 4 4
PCBP1 WILD-TYPE 88 156 134
'PCBP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.298 (Fisher's exact test), Q value = 0.63

Table S624.  Gene #56: 'PCBP1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
PCBP1 MUTATED 4 5 0
PCBP1 WILD-TYPE 178 128 72
'PCBP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.319 (Fisher's exact test), Q value = 0.65

Table S625.  Gene #56: 'PCBP1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
PCBP1 MUTATED 1 5 3 6
PCBP1 WILD-TYPE 111 91 89 180
'PCBP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.17 (Fisher's exact test), Q value = 0.47

Table S626.  Gene #56: 'PCBP1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
PCBP1 MUTATED 1 3 1 4 1 2 3
PCBP1 WILD-TYPE 59 47 48 36 62 123 96
'PCBP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.4 (Fisher's exact test), Q value = 0.73

Table S627.  Gene #56: 'PCBP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
PCBP1 MUTATED 6 1 3 4
PCBP1 WILD-TYPE 124 77 65 192
'PCBP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0843 (Fisher's exact test), Q value = 0.31

Table S628.  Gene #56: 'PCBP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
PCBP1 MUTATED 4 2 0 0 1 1 3 1 2
PCBP1 WILD-TYPE 36 60 28 80 68 47 40 27 72
'PCBP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S629.  Gene #56: 'PCBP1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
PCBP1 MUTATED 1 1 1 1
PCBP1 WILD-TYPE 32 30 26 18
'PCBP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.87 (Fisher's exact test), Q value = 1

Table S630.  Gene #56: 'PCBP1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
PCBP1 MUTATED 3 0 1 0
PCBP1 WILD-TYPE 51 10 23 22
'IFT57 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.327 (Fisher's exact test), Q value = 0.66

Table S631.  Gene #57: 'IFT57 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
IFT57 MUTATED 8 4 1 0
IFT57 WILD-TYPE 170 179 100 20
'IFT57 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.741 (Fisher's exact test), Q value = 1

Table S632.  Gene #57: 'IFT57 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
IFT57 MUTATED 4 2 5
IFT57 WILD-TYPE 83 78 95
'IFT57 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.246 (Fisher's exact test), Q value = 0.57

Table S633.  Gene #57: 'IFT57 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
IFT57 MUTATED 1 4 7
IFT57 WILD-TYPE 88 156 131
'IFT57 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.637 (Fisher's exact test), Q value = 0.93

Table S634.  Gene #57: 'IFT57 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
IFT57 MUTATED 7 4 1
IFT57 WILD-TYPE 175 129 71
'IFT57 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0264 (Fisher's exact test), Q value = 0.16

Table S635.  Gene #57: 'IFT57 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
IFT57 MUTATED 2 7 2 2
IFT57 WILD-TYPE 110 89 90 184

Figure S249.  Get High-res Image Gene #57: 'IFT57 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'IFT57 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.019 (Fisher's exact test), Q value = 0.14

Table S636.  Gene #57: 'IFT57 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
IFT57 MUTATED 1 3 5 1 1 1 1
IFT57 WILD-TYPE 59 47 44 39 62 124 98

Figure S250.  Get High-res Image Gene #57: 'IFT57 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'IFT57 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.477 (Fisher's exact test), Q value = 0.81

Table S637.  Gene #57: 'IFT57 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
IFT57 MUTATED 6 1 1 4
IFT57 WILD-TYPE 124 77 67 192
'IFT57 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.761 (Fisher's exact test), Q value = 1

Table S638.  Gene #57: 'IFT57 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
IFT57 MUTATED 1 2 1 2 4 0 1 0 1
IFT57 WILD-TYPE 39 60 27 78 65 48 42 28 73
'RSPH3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.345 (Fisher's exact test), Q value = 0.67

Table S639.  Gene #58: 'RSPH3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
RSPH3 MUTATED 7 2 2 0
RSPH3 WILD-TYPE 171 181 99 20
'RSPH3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.124 (Fisher's exact test), Q value = 0.39

Table S640.  Gene #58: 'RSPH3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
RSPH3 MUTATED 2 1 7
RSPH3 WILD-TYPE 85 79 93
'RSPH3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.173 (Fisher's exact test), Q value = 0.47

Table S641.  Gene #58: 'RSPH3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
RSPH3 MUTATED 0 6 3
RSPH3 WILD-TYPE 89 154 135
'RSPH3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.822 (Fisher's exact test), Q value = 1

Table S642.  Gene #58: 'RSPH3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
RSPH3 MUTATED 4 4 1
RSPH3 WILD-TYPE 178 129 71
'RSPH3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.113 (Fisher's exact test), Q value = 0.37

Table S643.  Gene #58: 'RSPH3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
RSPH3 MUTATED 3 4 3 1
RSPH3 WILD-TYPE 109 92 89 185
'RSPH3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 4e-04 (Fisher's exact test), Q value = 0.013

Table S644.  Gene #58: 'RSPH3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
RSPH3 MUTATED 4 1 5 0 0 0 1
RSPH3 WILD-TYPE 56 49 44 40 63 125 98

Figure S251.  Get High-res Image Gene #58: 'RSPH3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'RSPH3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.227 (Fisher's exact test), Q value = 0.55

Table S645.  Gene #58: 'RSPH3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
RSPH3 MUTATED 5 3 1 2
RSPH3 WILD-TYPE 125 75 67 194
'RSPH3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.348 (Fisher's exact test), Q value = 0.68

Table S646.  Gene #58: 'RSPH3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
RSPH3 MUTATED 0 2 1 4 3 0 1 0 0
RSPH3 WILD-TYPE 40 60 27 76 66 48 42 28 74
'RSPH3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00198 (Fisher's exact test), Q value = 0.037

Table S647.  Gene #58: 'RSPH3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
RSPH3 MUTATED 0 0 2 4
RSPH3 WILD-TYPE 33 31 25 15

Figure S252.  Get High-res Image Gene #58: 'RSPH3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'RSPH3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00939 (Fisher's exact test), Q value = 0.091

Table S648.  Gene #58: 'RSPH3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
RSPH3 MUTATED 1 0 5 0
RSPH3 WILD-TYPE 53 10 19 22

Figure S253.  Get High-res Image Gene #58: 'RSPH3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

'RLIM MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.785 (Fisher's exact test), Q value = 1

Table S649.  Gene #59: 'RLIM MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
RLIM MUTATED 1 0 1 1
RLIM WILD-TYPE 45 58 63 42
'RLIM MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.349 (Fisher's exact test), Q value = 0.68

Table S650.  Gene #59: 'RLIM MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
RLIM MUTATED 1 0 2
RLIM WILD-TYPE 50 83 75
'RLIM MUTATION STATUS' versus 'CN_CNMF'

P value = 0.424 (Fisher's exact test), Q value = 0.75

Table S651.  Gene #59: 'RLIM MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
RLIM MUTATED 7 6 3 2
RLIM WILD-TYPE 171 177 98 18
'RLIM MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.796 (Fisher's exact test), Q value = 1

Table S652.  Gene #59: 'RLIM MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
RLIM MUTATED 4 4 7
RLIM WILD-TYPE 83 76 93
'RLIM MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.804 (Fisher's exact test), Q value = 1

Table S653.  Gene #59: 'RLIM MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
RLIM MUTATED 3 6 7
RLIM WILD-TYPE 86 154 131
'RLIM MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S654.  Gene #59: 'RLIM MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
RLIM MUTATED 8 5 3
RLIM WILD-TYPE 174 128 69
'RLIM MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.385 (Fisher's exact test), Q value = 0.71

Table S655.  Gene #59: 'RLIM MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
RLIM MUTATED 4 5 5 4
RLIM WILD-TYPE 108 91 87 182
'RLIM MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.122 (Fisher's exact test), Q value = 0.39

Table S656.  Gene #59: 'RLIM MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
RLIM MUTATED 5 2 3 2 3 2 1
RLIM WILD-TYPE 55 48 46 38 60 123 98
'RLIM MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.161 (Fisher's exact test), Q value = 0.45

Table S657.  Gene #59: 'RLIM MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
RLIM MUTATED 9 3 2 4
RLIM WILD-TYPE 121 75 66 192
'RLIM MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.13 (Fisher's exact test), Q value = 0.4

Table S658.  Gene #59: 'RLIM MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
RLIM MUTATED 2 1 2 4 4 1 4 0 0
RLIM WILD-TYPE 38 61 26 76 65 47 39 28 74
'RLIM MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.762 (Fisher's exact test), Q value = 1

Table S659.  Gene #59: 'RLIM MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
RLIM MUTATED 1 3 1 1
RLIM WILD-TYPE 32 28 26 18
'RLIM MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.788 (Fisher's exact test), Q value = 1

Table S660.  Gene #59: 'RLIM MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
RLIM MUTATED 3 1 1 1
RLIM WILD-TYPE 51 9 23 21
'ROS1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00533 (Fisher's exact test), Q value = 0.066

Table S661.  Gene #60: 'ROS1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ROS1 MUTATED 4 2 0 6
ROS1 WILD-TYPE 42 56 64 37

Figure S254.  Get High-res Image Gene #60: 'ROS1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'ROS1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0256 (Fisher's exact test), Q value = 0.16

Table S662.  Gene #60: 'ROS1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ROS1 MUTATED 7 3 2
ROS1 WILD-TYPE 44 80 75

Figure S255.  Get High-res Image Gene #60: 'ROS1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'ROS1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00188 (Fisher's exact test), Q value = 0.036

Table S663.  Gene #60: 'ROS1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ROS1 MUTATED 32 11 8 3
ROS1 WILD-TYPE 146 172 93 17

Figure S256.  Get High-res Image Gene #60: 'ROS1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ROS1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.148 (Fisher's exact test), Q value = 0.43

Table S664.  Gene #60: 'ROS1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ROS1 MUTATED 16 7 17
ROS1 WILD-TYPE 71 73 83
'ROS1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0145 (Fisher's exact test), Q value = 0.12

Table S665.  Gene #60: 'ROS1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ROS1 MUTATED 4 16 23
ROS1 WILD-TYPE 85 144 115

Figure S257.  Get High-res Image Gene #60: 'ROS1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'ROS1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.22 (Fisher's exact test), Q value = 0.53

Table S666.  Gene #60: 'ROS1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ROS1 MUTATED 24 15 4
ROS1 WILD-TYPE 158 118 68
'ROS1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.094 (Fisher's exact test), Q value = 0.34

Table S667.  Gene #60: 'ROS1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ROS1 MUTATED 11 14 15 14
ROS1 WILD-TYPE 101 82 77 172
'ROS1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S668.  Gene #60: 'ROS1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ROS1 MUTATED 8 7 16 3 7 3 10
ROS1 WILD-TYPE 52 43 33 37 56 122 89

Figure S258.  Get High-res Image Gene #60: 'ROS1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ROS1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00392 (Fisher's exact test), Q value = 0.057

Table S669.  Gene #60: 'ROS1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ROS1 MUTATED 26 8 5 14
ROS1 WILD-TYPE 104 70 63 182

Figure S259.  Get High-res Image Gene #60: 'ROS1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'ROS1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.043 (Fisher's exact test), Q value = 0.22

Table S670.  Gene #60: 'ROS1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ROS1 MUTATED 7 10 3 7 14 3 5 1 3
ROS1 WILD-TYPE 33 52 25 73 55 45 38 27 71

Figure S260.  Get High-res Image Gene #60: 'ROS1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'ROS1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.383 (Fisher's exact test), Q value = 0.71

Table S671.  Gene #60: 'ROS1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
ROS1 MUTATED 3 4 3 5
ROS1 WILD-TYPE 30 27 24 14
'ROS1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.641 (Fisher's exact test), Q value = 0.93

Table S672.  Gene #60: 'ROS1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
ROS1 MUTATED 9 2 2 2
ROS1 WILD-TYPE 45 8 22 20
'MPHOSPH10 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00012 (Fisher's exact test), Q value = 0.0059

Table S673.  Gene #61: 'MPHOSPH10 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
MPHOSPH10 MUTATED 15 0 2 1
MPHOSPH10 WILD-TYPE 163 183 99 19

Figure S261.  Get High-res Image Gene #61: 'MPHOSPH10 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'MPHOSPH10 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00586 (Fisher's exact test), Q value = 0.069

Table S674.  Gene #61: 'MPHOSPH10 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
MPHOSPH10 MUTATED 9 0 7
MPHOSPH10 WILD-TYPE 78 80 93

Figure S262.  Get High-res Image Gene #61: 'MPHOSPH10 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'MPHOSPH10 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0538 (Fisher's exact test), Q value = 0.25

Table S675.  Gene #61: 'MPHOSPH10 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
MPHOSPH10 MUTATED 1 3 9
MPHOSPH10 WILD-TYPE 88 157 129
'MPHOSPH10 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.528 (Fisher's exact test), Q value = 0.85

Table S676.  Gene #61: 'MPHOSPH10 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
MPHOSPH10 MUTATED 8 4 1
MPHOSPH10 WILD-TYPE 174 129 71
'MPHOSPH10 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00323 (Fisher's exact test), Q value = 0.051

Table S677.  Gene #61: 'MPHOSPH10 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
MPHOSPH10 MUTATED 2 6 8 2
MPHOSPH10 WILD-TYPE 110 90 84 184

Figure S263.  Get High-res Image Gene #61: 'MPHOSPH10 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'MPHOSPH10 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 3e-05 (Fisher's exact test), Q value = 0.0022

Table S678.  Gene #61: 'MPHOSPH10 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
MPHOSPH10 MUTATED 1 3 9 0 3 2 0
MPHOSPH10 WILD-TYPE 59 47 40 40 60 123 99

Figure S264.  Get High-res Image Gene #61: 'MPHOSPH10 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'MPHOSPH10 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0256 (Fisher's exact test), Q value = 0.16

Table S679.  Gene #61: 'MPHOSPH10 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
MPHOSPH10 MUTATED 7 6 0 4
MPHOSPH10 WILD-TYPE 123 72 68 192

Figure S265.  Get High-res Image Gene #61: 'MPHOSPH10 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'MPHOSPH10 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0482 (Fisher's exact test), Q value = 0.23

Table S680.  Gene #61: 'MPHOSPH10 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
MPHOSPH10 MUTATED 4 5 0 5 2 0 0 0 1
MPHOSPH10 WILD-TYPE 36 57 28 75 67 48 43 28 73

Figure S266.  Get High-res Image Gene #61: 'MPHOSPH10 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'MPHOSPH10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.174 (Fisher's exact test), Q value = 0.47

Table S681.  Gene #61: 'MPHOSPH10 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
MPHOSPH10 MUTATED 4 1 0 2
MPHOSPH10 WILD-TYPE 29 30 27 17
'MPHOSPH10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.34 (Fisher's exact test), Q value = 0.67

Table S682.  Gene #61: 'MPHOSPH10 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
MPHOSPH10 MUTATED 6 0 1 0
MPHOSPH10 WILD-TYPE 48 10 23 22
'VCX2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.245 (Fisher's exact test), Q value = 0.57

Table S683.  Gene #62: 'VCX2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
VCX2 MUTATED 2 7 2 1
VCX2 WILD-TYPE 176 176 99 19
'VCX2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0657 (Fisher's exact test), Q value = 0.28

Table S684.  Gene #62: 'VCX2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
VCX2 MUTATED 5 6 1
VCX2 WILD-TYPE 82 74 99
'VCX2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S685.  Gene #62: 'VCX2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
VCX2 MUTATED 2 5 4
VCX2 WILD-TYPE 87 155 134
'VCX2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.558 (Fisher's exact test), Q value = 0.87

Table S686.  Gene #62: 'VCX2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
VCX2 MUTATED 7 3 1
VCX2 WILD-TYPE 175 130 71
'VCX2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00533 (Fisher's exact test), Q value = 0.066

Table S687.  Gene #62: 'VCX2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
VCX2 MUTATED 6 3 3 0
VCX2 WILD-TYPE 106 93 89 186

Figure S267.  Get High-res Image Gene #62: 'VCX2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'VCX2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00541 (Fisher's exact test), Q value = 0.066

Table S688.  Gene #62: 'VCX2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
VCX2 MUTATED 3 2 1 2 4 0 0
VCX2 WILD-TYPE 57 48 48 38 59 125 99

Figure S268.  Get High-res Image Gene #62: 'VCX2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'VCX2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00109 (Fisher's exact test), Q value = 0.026

Table S689.  Gene #62: 'VCX2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
VCX2 MUTATED 4 6 2 0
VCX2 WILD-TYPE 126 72 66 196

Figure S269.  Get High-res Image Gene #62: 'VCX2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'VCX2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0798 (Fisher's exact test), Q value = 0.3

Table S690.  Gene #62: 'VCX2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
VCX2 MUTATED 0 2 2 3 0 1 3 1 0
VCX2 WILD-TYPE 40 60 26 77 69 47 40 27 74
'VCX2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.533 (Fisher's exact test), Q value = 0.85

Table S691.  Gene #62: 'VCX2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
VCX2 MUTATED 2 3 3 0
VCX2 WILD-TYPE 31 28 24 19
'VCX2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.515 (Fisher's exact test), Q value = 0.84

Table S692.  Gene #62: 'VCX2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
VCX2 MUTATED 3 1 1 3
VCX2 WILD-TYPE 51 9 23 19
'C2ORF29 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.796 (Fisher's exact test), Q value = 1

Table S693.  Gene #63: 'C2ORF29 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
C2ORF29 MUTATED 9 7 3 0
C2ORF29 WILD-TYPE 169 176 98 20
'C2ORF29 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0448 (Fisher's exact test), Q value = 0.23

Table S694.  Gene #63: 'C2ORF29 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
C2ORF29 MUTATED 8 1 9
C2ORF29 WILD-TYPE 79 79 91

Figure S270.  Get High-res Image Gene #63: 'C2ORF29 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'C2ORF29 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.222 (Fisher's exact test), Q value = 0.54

Table S695.  Gene #63: 'C2ORF29 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
C2ORF29 MUTATED 1 9 6
C2ORF29 WILD-TYPE 88 151 132
'C2ORF29 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.793 (Fisher's exact test), Q value = 1

Table S696.  Gene #63: 'C2ORF29 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
C2ORF29 MUTATED 7 5 4
C2ORF29 WILD-TYPE 175 128 68
'C2ORF29 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00406 (Fisher's exact test), Q value = 0.058

Table S697.  Gene #63: 'C2ORF29 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
C2ORF29 MUTATED 5 7 6 1
C2ORF29 WILD-TYPE 107 89 86 185

Figure S271.  Get High-res Image Gene #63: 'C2ORF29 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'C2ORF29 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00079 (Fisher's exact test), Q value = 0.021

Table S698.  Gene #63: 'C2ORF29 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
C2ORF29 MUTATED 5 4 5 1 3 0 1
C2ORF29 WILD-TYPE 55 46 44 39 60 125 98

Figure S272.  Get High-res Image Gene #63: 'C2ORF29 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'C2ORF29 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 6e-05 (Fisher's exact test), Q value = 0.0037

Table S699.  Gene #63: 'C2ORF29 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
C2ORF29 MUTATED 14 3 1 1
C2ORF29 WILD-TYPE 116 75 67 195

Figure S273.  Get High-res Image Gene #63: 'C2ORF29 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'C2ORF29 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.289 (Fisher's exact test), Q value = 0.62

Table S700.  Gene #63: 'C2ORF29 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
C2ORF29 MUTATED 3 2 2 3 4 3 2 0 0
C2ORF29 WILD-TYPE 37 60 26 77 65 45 41 28 74
'C2ORF29 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.357 (Fisher's exact test), Q value = 0.69

Table S701.  Gene #63: 'C2ORF29 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
C2ORF29 MUTATED 1 1 0 2
C2ORF29 WILD-TYPE 32 30 27 17
'C2ORF29 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.485 (Fisher's exact test), Q value = 0.81

Table S702.  Gene #63: 'C2ORF29 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
C2ORF29 MUTATED 1 0 2 1
C2ORF29 WILD-TYPE 53 10 22 21
'DDX26B MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S703.  Gene #64: 'DDX26B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
DDX26B MUTATED 15 0 0 1
DDX26B WILD-TYPE 163 183 101 19

Figure S274.  Get High-res Image Gene #64: 'DDX26B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'DDX26B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0127 (Fisher's exact test), Q value = 0.11

Table S704.  Gene #64: 'DDX26B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
DDX26B MUTATED 5 0 9
DDX26B WILD-TYPE 82 80 91

Figure S275.  Get High-res Image Gene #64: 'DDX26B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'DDX26B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0189 (Fisher's exact test), Q value = 0.14

Table S705.  Gene #64: 'DDX26B MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
DDX26B MUTATED 2 2 10
DDX26B WILD-TYPE 87 158 128

Figure S276.  Get High-res Image Gene #64: 'DDX26B MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'DDX26B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.244 (Fisher's exact test), Q value = 0.57

Table S706.  Gene #64: 'DDX26B MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
DDX26B MUTATED 10 3 1
DDX26B WILD-TYPE 172 130 71
'DDX26B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00018 (Fisher's exact test), Q value = 0.0078

Table S707.  Gene #64: 'DDX26B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
DDX26B MUTATED 0 6 8 2
DDX26B WILD-TYPE 112 90 84 184

Figure S277.  Get High-res Image Gene #64: 'DDX26B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'DDX26B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 4e-05 (Fisher's exact test), Q value = 0.0027

Table S708.  Gene #64: 'DDX26B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
DDX26B MUTATED 1 2 9 1 1 1 1
DDX26B WILD-TYPE 59 48 40 39 62 124 98

Figure S278.  Get High-res Image Gene #64: 'DDX26B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'DDX26B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0184 (Fisher's exact test), Q value = 0.14

Table S709.  Gene #64: 'DDX26B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
DDX26B MUTATED 10 2 0 4
DDX26B WILD-TYPE 120 76 68 192

Figure S279.  Get High-res Image Gene #64: 'DDX26B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'DDX26B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0508 (Fisher's exact test), Q value = 0.24

Table S710.  Gene #64: 'DDX26B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
DDX26B MUTATED 2 6 0 1 5 0 1 0 1
DDX26B WILD-TYPE 38 56 28 79 64 48 42 28 73
'DDX26B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0253 (Fisher's exact test), Q value = 0.16

Table S711.  Gene #64: 'DDX26B MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
DDX26B MUTATED 1 0 0 3
DDX26B WILD-TYPE 32 31 27 16

Figure S280.  Get High-res Image Gene #64: 'DDX26B MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'DDX26B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.433 (Fisher's exact test), Q value = 0.76

Table S712.  Gene #64: 'DDX26B MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
DDX26B MUTATED 4 0 0 0
DDX26B WILD-TYPE 50 10 24 22
'RBPJ MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.224 (Fisher's exact test), Q value = 0.54

Table S713.  Gene #65: 'RBPJ MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
RBPJ MUTATED 2 1 0 2
RBPJ WILD-TYPE 44 57 64 41
'RBPJ MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.637 (Fisher's exact test), Q value = 0.93

Table S714.  Gene #65: 'RBPJ MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
RBPJ MUTATED 2 1 2
RBPJ WILD-TYPE 49 82 75
'RBPJ MUTATION STATUS' versus 'CN_CNMF'

P value = 0.019 (Fisher's exact test), Q value = 0.14

Table S715.  Gene #65: 'RBPJ MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
RBPJ MUTATED 12 5 0 0
RBPJ WILD-TYPE 166 178 101 20

Figure S281.  Get High-res Image Gene #65: 'RBPJ MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'RBPJ MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.658 (Fisher's exact test), Q value = 0.94

Table S716.  Gene #65: 'RBPJ MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
RBPJ MUTATED 3 5 6
RBPJ WILD-TYPE 84 75 94
'RBPJ MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.625 (Fisher's exact test), Q value = 0.92

Table S717.  Gene #65: 'RBPJ MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
RBPJ MUTATED 2 8 7
RBPJ WILD-TYPE 87 152 131
'RBPJ MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S718.  Gene #65: 'RBPJ MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
RBPJ MUTATED 8 6 3
RBPJ WILD-TYPE 174 127 69
'RBPJ MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.625 (Fisher's exact test), Q value = 0.92

Table S719.  Gene #65: 'RBPJ MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
RBPJ MUTATED 5 3 5 5
RBPJ WILD-TYPE 107 93 87 181
'RBPJ MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0701 (Fisher's exact test), Q value = 0.29

Table S720.  Gene #65: 'RBPJ MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
RBPJ MUTATED 4 3 4 0 3 1 3
RBPJ WILD-TYPE 56 47 45 40 60 124 96
'RBPJ MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.262 (Fisher's exact test), Q value = 0.59

Table S721.  Gene #65: 'RBPJ MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
RBPJ MUTATED 5 6 2 5
RBPJ WILD-TYPE 125 72 66 191
'RBPJ MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.122 (Fisher's exact test), Q value = 0.39

Table S722.  Gene #65: 'RBPJ MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
RBPJ MUTATED 5 4 1 1 3 1 2 0 1
RBPJ WILD-TYPE 35 58 27 79 66 47 41 28 73
'RBPJ MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.466 (Fisher's exact test), Q value = 0.79

Table S723.  Gene #65: 'RBPJ MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
RBPJ MUTATED 4 1 1 2
RBPJ WILD-TYPE 29 30 26 17
'RBPJ MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.492 (Fisher's exact test), Q value = 0.82

Table S724.  Gene #65: 'RBPJ MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
RBPJ MUTATED 5 1 2 0
RBPJ WILD-TYPE 49 9 22 22
'SMAD4 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0155 (Fisher's exact test), Q value = 0.12

Table S725.  Gene #66: 'SMAD4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
SMAD4 MUTATED 9 4 5 11
SMAD4 WILD-TYPE 37 54 59 32

Figure S282.  Get High-res Image Gene #66: 'SMAD4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'SMAD4 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0487 (Fisher's exact test), Q value = 0.24

Table S726.  Gene #66: 'SMAD4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
SMAD4 MUTATED 11 6 12
SMAD4 WILD-TYPE 40 77 65

Figure S283.  Get High-res Image Gene #66: 'SMAD4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'SMAD4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.688 (Fisher's exact test), Q value = 0.97

Table S727.  Gene #66: 'SMAD4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
SMAD4 MUTATED 58 49 30 6
SMAD4 WILD-TYPE 120 134 71 14
'SMAD4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.233 (Fisher's exact test), Q value = 0.55

Table S728.  Gene #66: 'SMAD4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
SMAD4 MUTATED 44 31 40
SMAD4 WILD-TYPE 43 49 60
'SMAD4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.27 (Fisher's exact test), Q value = 0.6

Table S729.  Gene #66: 'SMAD4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
SMAD4 MUTATED 23 51 50
SMAD4 WILD-TYPE 66 109 88
'SMAD4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00516 (Fisher's exact test), Q value = 0.065

Table S730.  Gene #66: 'SMAD4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
SMAD4 MUTATED 73 35 16
SMAD4 WILD-TYPE 109 98 56

Figure S284.  Get High-res Image Gene #66: 'SMAD4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'SMAD4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S731.  Gene #66: 'SMAD4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
SMAD4 MUTATED 43 30 43 27
SMAD4 WILD-TYPE 69 66 49 159

Figure S285.  Get High-res Image Gene #66: 'SMAD4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'SMAD4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S732.  Gene #66: 'SMAD4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
SMAD4 MUTATED 24 21 21 16 29 10 22
SMAD4 WILD-TYPE 36 29 28 24 34 115 77

Figure S286.  Get High-res Image Gene #66: 'SMAD4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'SMAD4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S733.  Gene #66: 'SMAD4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
SMAD4 MUTATED 57 38 18 30
SMAD4 WILD-TYPE 73 40 50 166

Figure S287.  Get High-res Image Gene #66: 'SMAD4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'SMAD4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 2e-05 (Fisher's exact test), Q value = 0.0017

Table S734.  Gene #66: 'SMAD4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
SMAD4 MUTATED 19 32 8 21 18 14 19 3 9
SMAD4 WILD-TYPE 21 30 20 59 51 34 24 25 65

Figure S288.  Get High-res Image Gene #66: 'SMAD4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'SMAD4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0607 (Fisher's exact test), Q value = 0.27

Table S735.  Gene #66: 'SMAD4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
SMAD4 MUTATED 15 17 6 10
SMAD4 WILD-TYPE 18 14 21 9
'SMAD4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0455 (Fisher's exact test), Q value = 0.23

Table S736.  Gene #66: 'SMAD4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
SMAD4 MUTATED 30 5 6 7
SMAD4 WILD-TYPE 24 5 18 15

Figure S289.  Get High-res Image Gene #66: 'SMAD4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

'SLC26A8 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0264 (Fisher's exact test), Q value = 0.16

Table S737.  Gene #67: 'SLC26A8 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
SLC26A8 MUTATED 3 0 0 2
SLC26A8 WILD-TYPE 43 58 64 41

Figure S290.  Get High-res Image Gene #67: 'SLC26A8 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'SLC26A8 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.739 (Fisher's exact test), Q value = 1

Table S738.  Gene #67: 'SLC26A8 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
SLC26A8 MUTATED 2 2 1
SLC26A8 WILD-TYPE 49 81 76
'SLC26A8 MUTATION STATUS' versus 'CN_CNMF'

P value = 5e-05 (Fisher's exact test), Q value = 0.0032

Table S739.  Gene #67: 'SLC26A8 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
SLC26A8 MUTATED 17 1 1 0
SLC26A8 WILD-TYPE 161 182 100 20

Figure S291.  Get High-res Image Gene #67: 'SLC26A8 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'SLC26A8 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.401 (Fisher's exact test), Q value = 0.73

Table S740.  Gene #67: 'SLC26A8 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
SLC26A8 MUTATED 5 2 7
SLC26A8 WILD-TYPE 82 78 93
'SLC26A8 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.865 (Fisher's exact test), Q value = 1

Table S741.  Gene #67: 'SLC26A8 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
SLC26A8 MUTATED 3 8 7
SLC26A8 WILD-TYPE 86 152 131
'SLC26A8 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.622 (Fisher's exact test), Q value = 0.92

Table S742.  Gene #67: 'SLC26A8 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
SLC26A8 MUTATED 8 8 2
SLC26A8 WILD-TYPE 174 125 70
'SLC26A8 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.636 (Fisher's exact test), Q value = 0.93

Table S743.  Gene #67: 'SLC26A8 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
SLC26A8 MUTATED 4 6 3 6
SLC26A8 WILD-TYPE 108 90 89 180
'SLC26A8 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00808 (Fisher's exact test), Q value = 0.084

Table S744.  Gene #67: 'SLC26A8 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
SLC26A8 MUTATED 2 2 7 0 3 1 4
SLC26A8 WILD-TYPE 58 48 42 40 60 124 95

Figure S292.  Get High-res Image Gene #67: 'SLC26A8 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'SLC26A8 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.684 (Fisher's exact test), Q value = 0.96

Table S745.  Gene #67: 'SLC26A8 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
SLC26A8 MUTATED 6 4 1 7
SLC26A8 WILD-TYPE 124 74 67 189
'SLC26A8 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.556 (Fisher's exact test), Q value = 0.87

Table S746.  Gene #67: 'SLC26A8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
SLC26A8 MUTATED 2 3 1 3 6 1 1 0 1
SLC26A8 WILD-TYPE 38 59 27 77 63 47 42 28 73
'SLC26A8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.89 (Fisher's exact test), Q value = 1

Table S747.  Gene #67: 'SLC26A8 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
SLC26A8 MUTATED 1 2 2 1
SLC26A8 WILD-TYPE 32 29 25 18
'SLC26A8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.642 (Fisher's exact test), Q value = 0.93

Table S748.  Gene #67: 'SLC26A8 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
SLC26A8 MUTATED 2 1 2 1
SLC26A8 WILD-TYPE 52 9 22 21
'RBBP7 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 1e-04 (Fisher's exact test), Q value = 0.0052

Table S749.  Gene #68: 'RBBP7 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
RBBP7 MUTATED 0 0 0 6
RBBP7 WILD-TYPE 46 58 64 37

Figure S293.  Get High-res Image Gene #68: 'RBBP7 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'RBBP7 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0709 (Fisher's exact test), Q value = 0.29

Table S750.  Gene #68: 'RBBP7 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
RBBP7 MUTATED 4 1 1
RBBP7 WILD-TYPE 47 82 76
'RBBP7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0565 (Fisher's exact test), Q value = 0.26

Table S751.  Gene #68: 'RBBP7 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
RBBP7 MUTATED 12 3 2 0
RBBP7 WILD-TYPE 166 180 99 20
'RBBP7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.148 (Fisher's exact test), Q value = 0.43

Table S752.  Gene #68: 'RBBP7 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
RBBP7 MUTATED 3 1 7
RBBP7 WILD-TYPE 84 79 93
'RBBP7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.174 (Fisher's exact test), Q value = 0.47

Table S753.  Gene #68: 'RBBP7 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
RBBP7 MUTATED 2 4 9
RBBP7 WILD-TYPE 87 156 129
'RBBP7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.941 (Fisher's exact test), Q value = 1

Table S754.  Gene #68: 'RBBP7 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
RBBP7 MUTATED 8 5 2
RBBP7 WILD-TYPE 174 128 70
'RBBP7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.696 (Fisher's exact test), Q value = 0.97

Table S755.  Gene #68: 'RBBP7 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
RBBP7 MUTATED 2 4 4 7
RBBP7 WILD-TYPE 110 92 88 179
'RBBP7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.114 (Fisher's exact test), Q value = 0.37

Table S756.  Gene #68: 'RBBP7 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
RBBP7 MUTATED 2 3 4 0 2 1 5
RBBP7 WILD-TYPE 58 47 45 40 61 124 94
'RBBP7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.111 (Fisher's exact test), Q value = 0.37

Table S757.  Gene #68: 'RBBP7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
RBBP7 MUTATED 8 2 0 5
RBBP7 WILD-TYPE 122 76 68 191
'RBBP7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.848 (Fisher's exact test), Q value = 1

Table S758.  Gene #68: 'RBBP7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
RBBP7 MUTATED 1 4 1 2 3 1 0 1 2
RBBP7 WILD-TYPE 39 58 27 78 66 47 43 27 72
'RBBP7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.137 (Fisher's exact test), Q value = 0.41

Table S759.  Gene #68: 'RBBP7 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
RBBP7 MUTATED 1 0 0 2
RBBP7 WILD-TYPE 32 31 27 17
'RBBP7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.842 (Fisher's exact test), Q value = 1

Table S760.  Gene #68: 'RBBP7 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
RBBP7 MUTATED 2 0 0 1
RBBP7 WILD-TYPE 52 10 24 21
'RB1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.136 (Fisher's exact test), Q value = 0.41

Table S761.  Gene #69: 'RB1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
RB1 MUTATED 3 0 1 2
RB1 WILD-TYPE 43 58 63 41
'RB1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.338 (Fisher's exact test), Q value = 0.67

Table S762.  Gene #69: 'RB1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
RB1 MUTATED 3 2 1
RB1 WILD-TYPE 48 81 76
'RB1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.109 (Fisher's exact test), Q value = 0.36

Table S763.  Gene #69: 'RB1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
RB1 MUTATED 47 30 19 5
RB1 WILD-TYPE 131 153 82 15
'RB1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00812 (Fisher's exact test), Q value = 0.084

Table S764.  Gene #69: 'RB1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
RB1 MUTATED 31 19 46
RB1 WILD-TYPE 56 61 54

Figure S294.  Get High-res Image Gene #69: 'RB1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'RB1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.172 (Fisher's exact test), Q value = 0.47

Table S765.  Gene #69: 'RB1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
RB1 MUTATED 15 35 38
RB1 WILD-TYPE 74 125 100
'RB1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.499 (Fisher's exact test), Q value = 0.83

Table S766.  Gene #69: 'RB1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
RB1 MUTATED 46 26 16
RB1 WILD-TYPE 136 107 56
'RB1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S767.  Gene #69: 'RB1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
RB1 MUTATED 23 40 30 9
RB1 WILD-TYPE 89 56 62 177

Figure S295.  Get High-res Image Gene #69: 'RB1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'RB1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S768.  Gene #69: 'RB1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
RB1 MUTATED 18 23 21 13 19 3 5
RB1 WILD-TYPE 42 27 28 27 44 122 94

Figure S296.  Get High-res Image Gene #69: 'RB1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'RB1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S769.  Gene #69: 'RB1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
RB1 MUTATED 57 22 10 13
RB1 WILD-TYPE 73 56 58 183

Figure S297.  Get High-res Image Gene #69: 'RB1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'RB1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S770.  Gene #69: 'RB1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
RB1 MUTATED 20 18 8 17 14 4 15 3 3
RB1 WILD-TYPE 20 44 20 63 55 44 28 25 71

Figure S298.  Get High-res Image Gene #69: 'RB1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'RB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.991 (Fisher's exact test), Q value = 1

Table S771.  Gene #69: 'RB1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
RB1 MUTATED 9 8 8 5
RB1 WILD-TYPE 24 23 19 14
'RB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.783 (Fisher's exact test), Q value = 1

Table S772.  Gene #69: 'RB1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
RB1 MUTATED 16 3 7 4
RB1 WILD-TYPE 38 7 17 18
'L1TD1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0014 (Fisher's exact test), Q value = 0.031

Table S773.  Gene #70: 'L1TD1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
L1TD1 MUTATED 2 0 0 5
L1TD1 WILD-TYPE 44 58 64 38

Figure S299.  Get High-res Image Gene #70: 'L1TD1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'L1TD1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.124 (Fisher's exact test), Q value = 0.39

Table S774.  Gene #70: 'L1TD1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
L1TD1 MUTATED 4 2 1
L1TD1 WILD-TYPE 47 81 76
'L1TD1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.01 (Fisher's exact test), Q value = 0.096

Table S775.  Gene #70: 'L1TD1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
L1TD1 MUTATED 14 2 4 0
L1TD1 WILD-TYPE 164 181 97 20

Figure S300.  Get High-res Image Gene #70: 'L1TD1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'L1TD1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0667 (Fisher's exact test), Q value = 0.28

Table S776.  Gene #70: 'L1TD1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
L1TD1 MUTATED 8 1 5
L1TD1 WILD-TYPE 79 79 95
'L1TD1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.414 (Fisher's exact test), Q value = 0.74

Table S777.  Gene #70: 'L1TD1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
L1TD1 MUTATED 2 9 4
L1TD1 WILD-TYPE 87 151 134
'L1TD1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.832 (Fisher's exact test), Q value = 1

Table S778.  Gene #70: 'L1TD1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
L1TD1 MUTATED 6 6 3
L1TD1 WILD-TYPE 176 127 69
'L1TD1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.138 (Fisher's exact test), Q value = 0.41

Table S779.  Gene #70: 'L1TD1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
L1TD1 MUTATED 2 8 3 7
L1TD1 WILD-TYPE 110 88 89 179
'L1TD1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0131 (Fisher's exact test), Q value = 0.11

Table S780.  Gene #70: 'L1TD1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
L1TD1 MUTATED 3 0 6 2 2 1 6
L1TD1 WILD-TYPE 57 50 43 38 61 124 93

Figure S301.  Get High-res Image Gene #70: 'L1TD1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'L1TD1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.44 (Fisher's exact test), Q value = 0.77

Table S781.  Gene #70: 'L1TD1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
L1TD1 MUTATED 4 5 1 9
L1TD1 WILD-TYPE 126 73 67 187
'L1TD1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0709 (Fisher's exact test), Q value = 0.29

Table S782.  Gene #70: 'L1TD1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
L1TD1 MUTATED 0 5 1 3 7 2 0 0 1
L1TD1 WILD-TYPE 40 57 27 77 62 46 43 28 73
'L1TD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.866 (Fisher's exact test), Q value = 1

Table S783.  Gene #70: 'L1TD1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
L1TD1 MUTATED 1 1 2 1
L1TD1 WILD-TYPE 32 30 25 18
'L1TD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.383 (Fisher's exact test), Q value = 0.71

Table S784.  Gene #70: 'L1TD1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
L1TD1 MUTATED 2 1 2 0
L1TD1 WILD-TYPE 52 9 22 22
'TOP2B MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.132 (Fisher's exact test), Q value = 0.41

Table S785.  Gene #71: 'TOP2B MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
TOP2B MUTATED 1 0 1 3
TOP2B WILD-TYPE 45 58 63 40
'TOP2B MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.637 (Fisher's exact test), Q value = 0.93

Table S786.  Gene #71: 'TOP2B MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
TOP2B MUTATED 2 1 2
TOP2B WILD-TYPE 49 82 75
'TOP2B MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S787.  Gene #71: 'TOP2B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
TOP2B MUTATED 21 3 0 0
TOP2B WILD-TYPE 157 180 101 20

Figure S302.  Get High-res Image Gene #71: 'TOP2B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'TOP2B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.563 (Fisher's exact test), Q value = 0.87

Table S788.  Gene #71: 'TOP2B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
TOP2B MUTATED 5 4 9
TOP2B WILD-TYPE 82 76 91
'TOP2B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.278 (Fisher's exact test), Q value = 0.61

Table S789.  Gene #71: 'TOP2B MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
TOP2B MUTATED 2 11 9
TOP2B WILD-TYPE 87 149 129
'TOP2B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.62 (Fisher's exact test), Q value = 0.92

Table S790.  Gene #71: 'TOP2B MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
TOP2B MUTATED 9 10 3
TOP2B WILD-TYPE 173 123 69
'TOP2B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0369 (Fisher's exact test), Q value = 0.2

Table S791.  Gene #71: 'TOP2B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
TOP2B MUTATED 3 11 4 7
TOP2B WILD-TYPE 109 85 88 179

Figure S303.  Get High-res Image Gene #71: 'TOP2B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'TOP2B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00018 (Fisher's exact test), Q value = 0.0078

Table S792.  Gene #71: 'TOP2B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
TOP2B MUTATED 4 2 10 1 1 1 6
TOP2B WILD-TYPE 56 48 39 39 62 124 93

Figure S304.  Get High-res Image Gene #71: 'TOP2B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'TOP2B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1e-04 (Fisher's exact test), Q value = 0.0052

Table S793.  Gene #71: 'TOP2B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
TOP2B MUTATED 16 0 0 9
TOP2B WILD-TYPE 114 78 68 187

Figure S305.  Get High-res Image Gene #71: 'TOP2B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'TOP2B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0195 (Fisher's exact test), Q value = 0.14

Table S794.  Gene #71: 'TOP2B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
TOP2B MUTATED 2 3 3 0 9 2 3 0 3
TOP2B WILD-TYPE 38 59 25 80 60 46 40 28 71

Figure S306.  Get High-res Image Gene #71: 'TOP2B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'TOP2B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00373 (Fisher's exact test), Q value = 0.056

Table S795.  Gene #71: 'TOP2B MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
TOP2B MUTATED 1 0 0 4
TOP2B WILD-TYPE 32 31 27 15

Figure S307.  Get High-res Image Gene #71: 'TOP2B MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'TOP2B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.189 (Fisher's exact test), Q value = 0.49

Table S796.  Gene #71: 'TOP2B MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
TOP2B MUTATED 2 0 3 0
TOP2B WILD-TYPE 52 10 21 22
'DCLK2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0065 (Fisher's exact test), Q value = 0.074

Table S797.  Gene #72: 'DCLK2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
DCLK2 MUTATED 4 0 0 2
DCLK2 WILD-TYPE 42 58 64 41

Figure S308.  Get High-res Image Gene #72: 'DCLK2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'DCLK2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.336 (Fisher's exact test), Q value = 0.66

Table S798.  Gene #72: 'DCLK2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
DCLK2 MUTATED 3 2 1
DCLK2 WILD-TYPE 48 81 76
'DCLK2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.425 (Fisher's exact test), Q value = 0.75

Table S799.  Gene #72: 'DCLK2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
DCLK2 MUTATED 8 4 2 1
DCLK2 WILD-TYPE 170 179 99 19
'DCLK2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.919 (Fisher's exact test), Q value = 1

Table S800.  Gene #72: 'DCLK2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
DCLK2 MUTATED 4 3 3
DCLK2 WILD-TYPE 83 77 97
'DCLK2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.014 (Fisher's exact test), Q value = 0.12

Table S801.  Gene #72: 'DCLK2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
DCLK2 MUTATED 0 3 9
DCLK2 WILD-TYPE 89 157 129

Figure S309.  Get High-res Image Gene #72: 'DCLK2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'DCLK2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.803 (Fisher's exact test), Q value = 1

Table S802.  Gene #72: 'DCLK2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
DCLK2 MUTATED 7 3 2
DCLK2 WILD-TYPE 175 130 70
'DCLK2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.617 (Fisher's exact test), Q value = 0.92

Table S803.  Gene #72: 'DCLK2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
DCLK2 MUTATED 2 5 3 6
DCLK2 WILD-TYPE 110 91 89 180
'DCLK2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.658 (Fisher's exact test), Q value = 0.94

Table S804.  Gene #72: 'DCLK2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
DCLK2 MUTATED 2 3 3 1 2 2 3
DCLK2 WILD-TYPE 58 47 46 39 61 123 96
'DCLK2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.697 (Fisher's exact test), Q value = 0.97

Table S805.  Gene #72: 'DCLK2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
DCLK2 MUTATED 4 4 1 7
DCLK2 WILD-TYPE 126 74 67 189
'DCLK2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.571 (Fisher's exact test), Q value = 0.88

Table S806.  Gene #72: 'DCLK2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
DCLK2 MUTATED 1 4 1 1 5 1 1 0 2
DCLK2 WILD-TYPE 39 58 27 79 64 47 42 28 72
'DCLK2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.781 (Fisher's exact test), Q value = 1

Table S807.  Gene #72: 'DCLK2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
DCLK2 MUTATED 1 0 1 1
DCLK2 WILD-TYPE 32 31 26 18
'DCLK2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.695 (Fisher's exact test), Q value = 0.97

Table S808.  Gene #72: 'DCLK2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
DCLK2 MUTATED 1 0 1 1
DCLK2 WILD-TYPE 53 10 23 21
'FKBP9 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00394 (Fisher's exact test), Q value = 0.057

Table S809.  Gene #73: 'FKBP9 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
FKBP9 MUTATED 1 0 0 4
FKBP9 WILD-TYPE 45 58 64 39

Figure S310.  Get High-res Image Gene #73: 'FKBP9 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'FKBP9 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.254 (Fisher's exact test), Q value = 0.58

Table S810.  Gene #73: 'FKBP9 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
FKBP9 MUTATED 3 1 1
FKBP9 WILD-TYPE 48 82 76
'FKBP9 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00062 (Fisher's exact test), Q value = 0.018

Table S811.  Gene #73: 'FKBP9 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
FKBP9 MUTATED 15 1 2 1
FKBP9 WILD-TYPE 163 182 99 19

Figure S311.  Get High-res Image Gene #73: 'FKBP9 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'FKBP9 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.144 (Fisher's exact test), Q value = 0.42

Table S812.  Gene #73: 'FKBP9 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
FKBP9 MUTATED 6 1 7
FKBP9 WILD-TYPE 81 79 93
'FKBP9 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.112 (Fisher's exact test), Q value = 0.37

Table S813.  Gene #73: 'FKBP9 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
FKBP9 MUTATED 1 5 9
FKBP9 WILD-TYPE 88 155 129
'FKBP9 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.941 (Fisher's exact test), Q value = 1

Table S814.  Gene #73: 'FKBP9 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
FKBP9 MUTATED 8 5 2
FKBP9 WILD-TYPE 174 128 70
'FKBP9 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.264 (Fisher's exact test), Q value = 0.59

Table S815.  Gene #73: 'FKBP9 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
FKBP9 MUTATED 3 7 4 5
FKBP9 WILD-TYPE 109 89 88 181
'FKBP9 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00131 (Fisher's exact test), Q value = 0.029

Table S816.  Gene #73: 'FKBP9 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
FKBP9 MUTATED 3 2 7 2 1 0 4
FKBP9 WILD-TYPE 57 48 42 38 62 125 95

Figure S312.  Get High-res Image Gene #73: 'FKBP9 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'FKBP9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.379 (Fisher's exact test), Q value = 0.71

Table S817.  Gene #73: 'FKBP9 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
FKBP9 MUTATED 8 2 1 6
FKBP9 WILD-TYPE 122 76 67 190
'FKBP9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.498 (Fisher's exact test), Q value = 0.82

Table S818.  Gene #73: 'FKBP9 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
FKBP9 MUTATED 1 3 1 4 5 0 2 0 1
FKBP9 WILD-TYPE 39 59 27 76 64 48 41 28 73
'FKBP9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0729 (Fisher's exact test), Q value = 0.29

Table S819.  Gene #73: 'FKBP9 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
FKBP9 MUTATED 1 0 1 3
FKBP9 WILD-TYPE 32 31 26 16
'FKBP9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S820.  Gene #73: 'FKBP9 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
FKBP9 MUTATED 3 0 1 1
FKBP9 WILD-TYPE 51 10 23 21
'PTEN MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0107 (Fisher's exact test), Q value = 0.099

Table S821.  Gene #74: 'PTEN MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
PTEN MUTATED 5 0 2 5
PTEN WILD-TYPE 41 58 62 38

Figure S313.  Get High-res Image Gene #74: 'PTEN MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'PTEN MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0925 (Fisher's exact test), Q value = 0.33

Table S822.  Gene #74: 'PTEN MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
PTEN MUTATED 6 2 4
PTEN WILD-TYPE 45 81 73
'PTEN MUTATION STATUS' versus 'CN_CNMF'

P value = 0.134 (Fisher's exact test), Q value = 0.41

Table S823.  Gene #74: 'PTEN MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
PTEN MUTATED 80 61 36 7
PTEN WILD-TYPE 98 122 65 13
'PTEN MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.264 (Fisher's exact test), Q value = 0.59

Table S824.  Gene #74: 'PTEN MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
PTEN MUTATED 51 53 70
PTEN WILD-TYPE 36 27 30
'PTEN MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00431 (Fisher's exact test), Q value = 0.06

Table S825.  Gene #74: 'PTEN MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
PTEN MUTATED 25 65 69
PTEN WILD-TYPE 64 95 69

Figure S314.  Get High-res Image Gene #74: 'PTEN MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'PTEN MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00215 (Fisher's exact test), Q value = 0.039

Table S826.  Gene #74: 'PTEN MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
PTEN MUTATED 86 56 17
PTEN WILD-TYPE 96 77 55

Figure S315.  Get High-res Image Gene #74: 'PTEN MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'PTEN MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S827.  Gene #74: 'PTEN MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
PTEN MUTATED 62 57 55 12
PTEN WILD-TYPE 50 39 37 174

Figure S316.  Get High-res Image Gene #74: 'PTEN MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'PTEN MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S828.  Gene #74: 'PTEN MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
PTEN MUTATED 44 33 37 21 38 3 10
PTEN WILD-TYPE 16 17 12 19 25 122 89

Figure S317.  Get High-res Image Gene #74: 'PTEN MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'PTEN MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S829.  Gene #74: 'PTEN MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
PTEN MUTATED 99 44 27 16
PTEN WILD-TYPE 31 34 41 180

Figure S318.  Get High-res Image Gene #74: 'PTEN MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'PTEN MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S830.  Gene #74: 'PTEN MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
PTEN MUTATED 24 42 19 24 22 16 31 4 4
PTEN WILD-TYPE 16 20 9 56 47 32 12 24 70

Figure S319.  Get High-res Image Gene #74: 'PTEN MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'PTEN MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.603 (Fisher's exact test), Q value = 0.91

Table S831.  Gene #74: 'PTEN MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
PTEN MUTATED 19 17 13 13
PTEN WILD-TYPE 14 14 14 6
'PTEN MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.575 (Fisher's exact test), Q value = 0.88

Table S832.  Gene #74: 'PTEN MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
PTEN MUTATED 32 4 15 11
PTEN WILD-TYPE 22 6 9 11
'C14ORF184 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.135 (Fisher's exact test), Q value = 0.41

Table S833.  Gene #75: 'C14ORF184 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
C14ORF184 MUTATED 2 1 3 1
C14ORF184 WILD-TYPE 176 182 98 19
'C14ORF184 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S834.  Gene #75: 'C14ORF184 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
C14ORF184 MUTATED 2 2 3
C14ORF184 WILD-TYPE 85 78 97
'C14ORF184 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.326 (Fisher's exact test), Q value = 0.66

Table S835.  Gene #75: 'C14ORF184 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
C14ORF184 MUTATED 1 1 4
C14ORF184 WILD-TYPE 88 159 134
'C14ORF184 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.763 (Fisher's exact test), Q value = 1

Table S836.  Gene #75: 'C14ORF184 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
C14ORF184 MUTATED 4 1 1
C14ORF184 WILD-TYPE 178 132 71
'C14ORF184 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0576 (Fisher's exact test), Q value = 0.26

Table S837.  Gene #75: 'C14ORF184 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
C14ORF184 MUTATED 2 3 2 0
C14ORF184 WILD-TYPE 110 93 90 186
'C14ORF184 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0613 (Fisher's exact test), Q value = 0.27

Table S838.  Gene #75: 'C14ORF184 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
C14ORF184 MUTATED 1 1 2 1 2 0 0
C14ORF184 WILD-TYPE 59 49 47 39 61 125 99
'C14ORF184 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00059 (Fisher's exact test), Q value = 0.017

Table S839.  Gene #75: 'C14ORF184 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
C14ORF184 MUTATED 7 0 0 0
C14ORF184 WILD-TYPE 123 78 68 196

Figure S320.  Get High-res Image Gene #75: 'C14ORF184 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'C14ORF184 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.362 (Fisher's exact test), Q value = 0.69

Table S840.  Gene #75: 'C14ORF184 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
C14ORF184 MUTATED 2 0 0 2 2 0 1 0 0
C14ORF184 WILD-TYPE 38 62 28 78 67 48 42 28 74
'HLA-A MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0226 (Fisher's exact test), Q value = 0.15

Table S841.  Gene #76: 'HLA-A MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
HLA-A MUTATED 2 0 0 3
HLA-A WILD-TYPE 44 58 64 40

Figure S321.  Get High-res Image Gene #76: 'HLA-A MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'HLA-A MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.115 (Fisher's exact test), Q value = 0.38

Table S842.  Gene #76: 'HLA-A MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
HLA-A MUTATED 2 0 3
HLA-A WILD-TYPE 49 83 74
'HLA-A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00178 (Fisher's exact test), Q value = 0.035

Table S843.  Gene #76: 'HLA-A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
HLA-A MUTATED 14 1 2 0
HLA-A WILD-TYPE 164 182 99 20

Figure S322.  Get High-res Image Gene #76: 'HLA-A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'HLA-A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0133 (Fisher's exact test), Q value = 0.11

Table S844.  Gene #76: 'HLA-A MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
HLA-A MUTATED 5 0 9
HLA-A WILD-TYPE 82 80 91

Figure S323.  Get High-res Image Gene #76: 'HLA-A MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'HLA-A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.488 (Fisher's exact test), Q value = 0.81

Table S845.  Gene #76: 'HLA-A MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
HLA-A MUTATED 3 5 8
HLA-A WILD-TYPE 86 155 130
'HLA-A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S846.  Gene #76: 'HLA-A MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
HLA-A MUTATED 8 5 3
HLA-A WILD-TYPE 174 128 69
'HLA-A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 6e-05 (Fisher's exact test), Q value = 0.0037

Table S847.  Gene #76: 'HLA-A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
HLA-A MUTATED 0 12 3 4
HLA-A WILD-TYPE 112 84 89 182

Figure S324.  Get High-res Image Gene #76: 'HLA-A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'HLA-A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00012 (Fisher's exact test), Q value = 0.0059

Table S848.  Gene #76: 'HLA-A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
HLA-A MUTATED 1 4 8 2 0 1 3
HLA-A WILD-TYPE 59 46 41 38 63 124 96

Figure S325.  Get High-res Image Gene #76: 'HLA-A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'HLA-A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.106 (Fisher's exact test), Q value = 0.36

Table S849.  Gene #76: 'HLA-A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
HLA-A MUTATED 9 2 0 8
HLA-A WILD-TYPE 121 76 68 188
'HLA-A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0326 (Fisher's exact test), Q value = 0.18

Table S850.  Gene #76: 'HLA-A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
HLA-A MUTATED 3 2 2 1 8 0 1 0 2
HLA-A WILD-TYPE 37 60 26 79 61 48 42 28 72

Figure S326.  Get High-res Image Gene #76: 'HLA-A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'HLA-A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.137 (Fisher's exact test), Q value = 0.41

Table S851.  Gene #76: 'HLA-A MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
HLA-A MUTATED 1 0 0 2
HLA-A WILD-TYPE 32 31 27 17
'HLA-A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S852.  Gene #76: 'HLA-A MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
HLA-A MUTATED 2 0 1 0
HLA-A WILD-TYPE 52 10 23 22
'BMPR2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 2e-04 (Fisher's exact test), Q value = 0.0083

Table S853.  Gene #77: 'BMPR2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
BMPR2 MUTATED 7 0 0 3
BMPR2 WILD-TYPE 39 58 64 40

Figure S327.  Get High-res Image Gene #77: 'BMPR2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'BMPR2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 3e-05 (Fisher's exact test), Q value = 0.0022

Table S854.  Gene #77: 'BMPR2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
BMPR2 MUTATED 9 0 1
BMPR2 WILD-TYPE 42 83 76

Figure S328.  Get High-res Image Gene #77: 'BMPR2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'BMPR2 MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S855.  Gene #77: 'BMPR2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
BMPR2 MUTATED 28 3 3 1
BMPR2 WILD-TYPE 150 180 98 19

Figure S329.  Get High-res Image Gene #77: 'BMPR2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'BMPR2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0114 (Fisher's exact test), Q value = 0.1

Table S856.  Gene #77: 'BMPR2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
BMPR2 MUTATED 7 3 17
BMPR2 WILD-TYPE 80 77 83

Figure S330.  Get High-res Image Gene #77: 'BMPR2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'BMPR2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.224 (Fisher's exact test), Q value = 0.54

Table S857.  Gene #77: 'BMPR2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
BMPR2 MUTATED 4 14 15
BMPR2 WILD-TYPE 85 146 123
'BMPR2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.886 (Fisher's exact test), Q value = 1

Table S858.  Gene #77: 'BMPR2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
BMPR2 MUTATED 17 11 5
BMPR2 WILD-TYPE 165 122 67
'BMPR2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00199 (Fisher's exact test), Q value = 0.037

Table S859.  Gene #77: 'BMPR2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
BMPR2 MUTATED 3 15 9 9
BMPR2 WILD-TYPE 109 81 83 177

Figure S331.  Get High-res Image Gene #77: 'BMPR2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'BMPR2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S860.  Gene #77: 'BMPR2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
BMPR2 MUTATED 2 4 18 1 2 0 9
BMPR2 WILD-TYPE 58 46 31 39 61 125 90

Figure S332.  Get High-res Image Gene #77: 'BMPR2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'BMPR2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0159 (Fisher's exact test), Q value = 0.13

Table S861.  Gene #77: 'BMPR2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
BMPR2 MUTATED 17 4 1 12
BMPR2 WILD-TYPE 113 74 67 184

Figure S333.  Get High-res Image Gene #77: 'BMPR2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'BMPR2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 7e-05 (Fisher's exact test), Q value = 0.0041

Table S862.  Gene #77: 'BMPR2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
BMPR2 MUTATED 4 5 2 1 16 1 3 1 1
BMPR2 WILD-TYPE 36 57 26 79 53 47 40 27 73

Figure S334.  Get High-res Image Gene #77: 'BMPR2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'BMPR2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00119 (Fisher's exact test), Q value = 0.028

Table S863.  Gene #77: 'BMPR2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
BMPR2 MUTATED 3 0 0 5
BMPR2 WILD-TYPE 30 31 27 14

Figure S335.  Get High-res Image Gene #77: 'BMPR2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'BMPR2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.293 (Fisher's exact test), Q value = 0.62

Table S864.  Gene #77: 'BMPR2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
BMPR2 MUTATED 3 0 4 1
BMPR2 WILD-TYPE 51 10 20 21
'FYN MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0224 (Fisher's exact test), Q value = 0.15

Table S865.  Gene #78: 'FYN MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
FYN MUTATED 2 0 0 3
FYN WILD-TYPE 44 58 64 40

Figure S336.  Get High-res Image Gene #78: 'FYN MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'FYN MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.739 (Fisher's exact test), Q value = 1

Table S866.  Gene #78: 'FYN MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
FYN MUTATED 2 2 1
FYN WILD-TYPE 49 81 76
'FYN MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0129 (Fisher's exact test), Q value = 0.11

Table S867.  Gene #78: 'FYN MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
FYN MUTATED 12 4 0 0
FYN WILD-TYPE 166 179 101 20

Figure S337.  Get High-res Image Gene #78: 'FYN MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'FYN MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S868.  Gene #78: 'FYN MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
FYN MUTATED 4 3 4
FYN WILD-TYPE 83 77 96
'FYN MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.234 (Fisher's exact test), Q value = 0.55

Table S869.  Gene #78: 'FYN MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
FYN MUTATED 6 4 4
FYN WILD-TYPE 83 156 134
'FYN MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.937 (Fisher's exact test), Q value = 1

Table S870.  Gene #78: 'FYN MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
FYN MUTATED 6 5 3
FYN WILD-TYPE 176 128 69
'FYN MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0916 (Fisher's exact test), Q value = 0.33

Table S871.  Gene #78: 'FYN MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
FYN MUTATED 1 7 2 7
FYN WILD-TYPE 111 89 90 179
'FYN MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.146 (Fisher's exact test), Q value = 0.43

Table S872.  Gene #78: 'FYN MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
FYN MUTATED 2 5 2 2 0 3 3
FYN WILD-TYPE 58 45 47 38 63 122 96
'FYN MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.305 (Fisher's exact test), Q value = 0.63

Table S873.  Gene #78: 'FYN MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
FYN MUTATED 5 4 0 8
FYN WILD-TYPE 125 74 68 188
'FYN MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.288 (Fisher's exact test), Q value = 0.62

Table S874.  Gene #78: 'FYN MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
FYN MUTATED 2 2 2 3 3 0 0 3 2
FYN WILD-TYPE 38 60 26 77 66 48 43 25 72
'FYN MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.78 (Fisher's exact test), Q value = 1

Table S875.  Gene #78: 'FYN MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
FYN MUTATED 1 0 1 1
FYN WILD-TYPE 32 31 26 18
'FYN MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.313 (Fisher's exact test), Q value = 0.64

Table S876.  Gene #78: 'FYN MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
FYN MUTATED 1 1 1 0
FYN WILD-TYPE 53 9 23 22
'ALDH1A3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00888 (Fisher's exact test), Q value = 0.088

Table S877.  Gene #79: 'ALDH1A3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ALDH1A3 MUTATED 3 0 0 3
ALDH1A3 WILD-TYPE 43 58 64 40

Figure S338.  Get High-res Image Gene #79: 'ALDH1A3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'ALDH1A3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.243 (Fisher's exact test), Q value = 0.57

Table S878.  Gene #79: 'ALDH1A3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ALDH1A3 MUTATED 3 1 2
ALDH1A3 WILD-TYPE 48 82 75
'ALDH1A3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00129 (Fisher's exact test), Q value = 0.029

Table S879.  Gene #79: 'ALDH1A3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ALDH1A3 MUTATED 15 2 1 1
ALDH1A3 WILD-TYPE 163 181 100 19

Figure S339.  Get High-res Image Gene #79: 'ALDH1A3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ALDH1A3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0127 (Fisher's exact test), Q value = 0.11

Table S880.  Gene #79: 'ALDH1A3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ALDH1A3 MUTATED 8 0 5
ALDH1A3 WILD-TYPE 79 80 95

Figure S340.  Get High-res Image Gene #79: 'ALDH1A3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'ALDH1A3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.226 (Fisher's exact test), Q value = 0.54

Table S881.  Gene #79: 'ALDH1A3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ALDH1A3 MUTATED 1 9 5
ALDH1A3 WILD-TYPE 88 151 133
'ALDH1A3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.611 (Fisher's exact test), Q value = 0.91

Table S882.  Gene #79: 'ALDH1A3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ALDH1A3 MUTATED 6 7 2
ALDH1A3 WILD-TYPE 176 126 70
'ALDH1A3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0131 (Fisher's exact test), Q value = 0.11

Table S883.  Gene #79: 'ALDH1A3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ALDH1A3 MUTATED 0 7 5 6
ALDH1A3 WILD-TYPE 112 89 87 180

Figure S341.  Get High-res Image Gene #79: 'ALDH1A3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'ALDH1A3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00548 (Fisher's exact test), Q value = 0.067

Table S884.  Gene #79: 'ALDH1A3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ALDH1A3 MUTATED 1 3 7 1 1 1 4
ALDH1A3 WILD-TYPE 59 47 42 39 62 124 95

Figure S342.  Get High-res Image Gene #79: 'ALDH1A3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ALDH1A3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.235 (Fisher's exact test), Q value = 0.56

Table S885.  Gene #79: 'ALDH1A3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ALDH1A3 MUTATED 7 4 0 8
ALDH1A3 WILD-TYPE 123 74 68 188
'ALDH1A3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.124 (Fisher's exact test), Q value = 0.39

Table S886.  Gene #79: 'ALDH1A3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ALDH1A3 MUTATED 2 3 1 2 8 0 1 0 2
ALDH1A3 WILD-TYPE 38 59 27 78 61 48 42 28 72
'ALDH1A3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0862 (Fisher's exact test), Q value = 0.32

Table S887.  Gene #79: 'ALDH1A3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
ALDH1A3 MUTATED 1 1 0 3
ALDH1A3 WILD-TYPE 32 30 27 16
'ALDH1A3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.577 (Fisher's exact test), Q value = 0.88

Table S888.  Gene #79: 'ALDH1A3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
ALDH1A3 MUTATED 3 0 2 0
ALDH1A3 WILD-TYPE 51 10 22 22
'LARP4B MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00139 (Fisher's exact test), Q value = 0.031

Table S889.  Gene #80: 'LARP4B MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
LARP4B MUTATED 7 0 1 3
LARP4B WILD-TYPE 39 58 63 40

Figure S343.  Get High-res Image Gene #80: 'LARP4B MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'LARP4B MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00144 (Fisher's exact test), Q value = 0.031

Table S890.  Gene #80: 'LARP4B MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
LARP4B MUTATED 8 2 1
LARP4B WILD-TYPE 43 81 76

Figure S344.  Get High-res Image Gene #80: 'LARP4B MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'LARP4B MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S891.  Gene #80: 'LARP4B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
LARP4B MUTATED 25 3 2 0
LARP4B WILD-TYPE 153 180 99 20

Figure S345.  Get High-res Image Gene #80: 'LARP4B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'LARP4B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0295 (Fisher's exact test), Q value = 0.18

Table S892.  Gene #80: 'LARP4B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
LARP4B MUTATED 9 1 9
LARP4B WILD-TYPE 78 79 91

Figure S346.  Get High-res Image Gene #80: 'LARP4B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'LARP4B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0174 (Fisher's exact test), Q value = 0.13

Table S893.  Gene #80: 'LARP4B MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
LARP4B MUTATED 2 7 15
LARP4B WILD-TYPE 87 153 123

Figure S347.  Get High-res Image Gene #80: 'LARP4B MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'LARP4B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.252 (Fisher's exact test), Q value = 0.58

Table S894.  Gene #80: 'LARP4B MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
LARP4B MUTATED 15 7 2
LARP4B WILD-TYPE 167 126 70
'LARP4B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00437 (Fisher's exact test), Q value = 0.061

Table S895.  Gene #80: 'LARP4B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
LARP4B MUTATED 1 12 5 13
LARP4B WILD-TYPE 111 84 87 173

Figure S348.  Get High-res Image Gene #80: 'LARP4B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'LARP4B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00011 (Fisher's exact test), Q value = 0.0056

Table S896.  Gene #80: 'LARP4B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
LARP4B MUTATED 2 2 12 2 1 3 9
LARP4B WILD-TYPE 58 48 37 38 62 122 90

Figure S349.  Get High-res Image Gene #80: 'LARP4B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'LARP4B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0126 (Fisher's exact test), Q value = 0.11

Table S897.  Gene #80: 'LARP4B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
LARP4B MUTATED 14 3 0 13
LARP4B WILD-TYPE 116 75 68 183

Figure S350.  Get High-res Image Gene #80: 'LARP4B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'LARP4B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00326 (Fisher's exact test), Q value = 0.051

Table S898.  Gene #80: 'LARP4B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
LARP4B MUTATED 2 6 0 3 12 0 2 3 2
LARP4B WILD-TYPE 38 56 28 77 57 48 41 25 72

Figure S351.  Get High-res Image Gene #80: 'LARP4B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'LARP4B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00492 (Fisher's exact test), Q value = 0.063

Table S899.  Gene #80: 'LARP4B MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
LARP4B MUTATED 0 0 0 3
LARP4B WILD-TYPE 33 31 27 16

Figure S352.  Get High-res Image Gene #80: 'LARP4B MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'LARP4B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.45 (Fisher's exact test), Q value = 0.78

Table S900.  Gene #80: 'LARP4B MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
LARP4B MUTATED 1 0 2 0
LARP4B WILD-TYPE 53 10 22 22
'ZDHHC7 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00405 (Fisher's exact test), Q value = 0.058

Table S901.  Gene #81: 'ZDHHC7 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ZDHHC7 MUTATED 4 0 0 0
ZDHHC7 WILD-TYPE 42 58 64 43

Figure S353.  Get High-res Image Gene #81: 'ZDHHC7 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'ZDHHC7 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0626 (Fisher's exact test), Q value = 0.27

Table S902.  Gene #81: 'ZDHHC7 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ZDHHC7 MUTATED 3 1 0
ZDHHC7 WILD-TYPE 48 82 77
'ZDHHC7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0201 (Fisher's exact test), Q value = 0.14

Table S903.  Gene #81: 'ZDHHC7 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ZDHHC7 MUTATED 9 1 1 1
ZDHHC7 WILD-TYPE 169 182 100 19

Figure S354.  Get High-res Image Gene #81: 'ZDHHC7 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ZDHHC7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.143 (Fisher's exact test), Q value = 0.42

Table S904.  Gene #81: 'ZDHHC7 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ZDHHC7 MUTATED 4 0 4
ZDHHC7 WILD-TYPE 83 80 96
'ZDHHC7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0329 (Fisher's exact test), Q value = 0.19

Table S905.  Gene #81: 'ZDHHC7 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ZDHHC7 MUTATED 0 2 7
ZDHHC7 WILD-TYPE 89 158 131

Figure S355.  Get High-res Image Gene #81: 'ZDHHC7 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'ZDHHC7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.74 (Fisher's exact test), Q value = 1

Table S906.  Gene #81: 'ZDHHC7 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ZDHHC7 MUTATED 5 2 2
ZDHHC7 WILD-TYPE 177 131 70
'ZDHHC7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.434 (Fisher's exact test), Q value = 0.76

Table S907.  Gene #81: 'ZDHHC7 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ZDHHC7 MUTATED 1 4 3 4
ZDHHC7 WILD-TYPE 111 92 89 182
'ZDHHC7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00541 (Fisher's exact test), Q value = 0.066

Table S908.  Gene #81: 'ZDHHC7 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ZDHHC7 MUTATED 0 4 4 0 0 1 3
ZDHHC7 WILD-TYPE 60 46 45 40 63 124 96

Figure S356.  Get High-res Image Gene #81: 'ZDHHC7 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ZDHHC7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.422 (Fisher's exact test), Q value = 0.75

Table S909.  Gene #81: 'ZDHHC7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ZDHHC7 MUTATED 5 1 0 6
ZDHHC7 WILD-TYPE 125 77 68 190
'ZDHHC7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.789 (Fisher's exact test), Q value = 1

Table S910.  Gene #81: 'ZDHHC7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ZDHHC7 MUTATED 0 2 1 3 3 0 1 1 1
ZDHHC7 WILD-TYPE 40 60 27 77 66 48 42 27 73
'ZDHHC7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0608 (Fisher's exact test), Q value = 0.27

Table S911.  Gene #81: 'ZDHHC7 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
ZDHHC7 MUTATED 0 0 1 2
ZDHHC7 WILD-TYPE 33 31 26 17
'ZDHHC7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.449 (Fisher's exact test), Q value = 0.77

Table S912.  Gene #81: 'ZDHHC7 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
ZDHHC7 MUTATED 1 0 2 0
ZDHHC7 WILD-TYPE 53 10 22 22
'GPATCH8 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0171 (Fisher's exact test), Q value = 0.13

Table S913.  Gene #82: 'GPATCH8 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
GPATCH8 MUTATED 3 0 0 0
GPATCH8 WILD-TYPE 43 58 64 43

Figure S357.  Get High-res Image Gene #82: 'GPATCH8 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'GPATCH8 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0134 (Fisher's exact test), Q value = 0.11

Table S914.  Gene #82: 'GPATCH8 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
GPATCH8 MUTATED 3 0 0
GPATCH8 WILD-TYPE 48 83 77

Figure S358.  Get High-res Image Gene #82: 'GPATCH8 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'GPATCH8 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00032 (Fisher's exact test), Q value = 0.011

Table S915.  Gene #82: 'GPATCH8 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
GPATCH8 MUTATED 13 1 0 1
GPATCH8 WILD-TYPE 165 182 101 19

Figure S359.  Get High-res Image Gene #82: 'GPATCH8 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'GPATCH8 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0358 (Fisher's exact test), Q value = 0.2

Table S916.  Gene #82: 'GPATCH8 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
GPATCH8 MUTATED 5 0 7
GPATCH8 WILD-TYPE 82 80 93

Figure S360.  Get High-res Image Gene #82: 'GPATCH8 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'GPATCH8 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00501 (Fisher's exact test), Q value = 0.064

Table S917.  Gene #82: 'GPATCH8 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
GPATCH8 MUTATED 1 2 11
GPATCH8 WILD-TYPE 88 158 127

Figure S361.  Get High-res Image Gene #82: 'GPATCH8 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'GPATCH8 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.594 (Fisher's exact test), Q value = 0.9

Table S918.  Gene #82: 'GPATCH8 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
GPATCH8 MUTATED 8 3 3
GPATCH8 WILD-TYPE 174 130 69
'GPATCH8 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00426 (Fisher's exact test), Q value = 0.06

Table S919.  Gene #82: 'GPATCH8 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
GPATCH8 MUTATED 0 6 6 3
GPATCH8 WILD-TYPE 112 90 86 183

Figure S362.  Get High-res Image Gene #82: 'GPATCH8 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'GPATCH8 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 2e-04 (Fisher's exact test), Q value = 0.0083

Table S920.  Gene #82: 'GPATCH8 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
GPATCH8 MUTATED 0 2 7 2 1 0 3
GPATCH8 WILD-TYPE 60 48 42 38 62 125 96

Figure S363.  Get High-res Image Gene #82: 'GPATCH8 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'GPATCH8 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.25 (Fisher's exact test), Q value = 0.58

Table S921.  Gene #82: 'GPATCH8 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
GPATCH8 MUTATED 7 2 0 6
GPATCH8 WILD-TYPE 123 76 68 190
'GPATCH8 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0147 (Fisher's exact test), Q value = 0.12

Table S922.  Gene #82: 'GPATCH8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
GPATCH8 MUTATED 3 4 0 0 6 0 1 0 1
GPATCH8 WILD-TYPE 37 58 28 80 63 48 42 28 73

Figure S364.  Get High-res Image Gene #82: 'GPATCH8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'GPATCH8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0045 (Fisher's exact test), Q value = 0.061

Table S923.  Gene #82: 'GPATCH8 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
GPATCH8 MUTATED 2 0 0 4
GPATCH8 WILD-TYPE 31 31 27 15

Figure S365.  Get High-res Image Gene #82: 'GPATCH8 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'GPATCH8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.282 (Fisher's exact test), Q value = 0.61

Table S924.  Gene #82: 'GPATCH8 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
GPATCH8 MUTATED 3 0 3 0
GPATCH8 WILD-TYPE 51 10 21 22
'BCORL1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0269 (Fisher's exact test), Q value = 0.17

Table S925.  Gene #83: 'BCORL1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
BCORL1 MUTATED 3 0 0 2
BCORL1 WILD-TYPE 43 58 64 41

Figure S366.  Get High-res Image Gene #83: 'BCORL1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'BCORL1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.255 (Fisher's exact test), Q value = 0.58

Table S926.  Gene #83: 'BCORL1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
BCORL1 MUTATED 3 1 1
BCORL1 WILD-TYPE 48 82 76
'BCORL1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00172 (Fisher's exact test), Q value = 0.034

Table S927.  Gene #83: 'BCORL1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
BCORL1 MUTATED 19 4 2 1
BCORL1 WILD-TYPE 159 179 99 19

Figure S367.  Get High-res Image Gene #83: 'BCORL1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'BCORL1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.15 (Fisher's exact test), Q value = 0.43

Table S928.  Gene #83: 'BCORL1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
BCORL1 MUTATED 7 3 12
BCORL1 WILD-TYPE 80 77 88
'BCORL1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.157 (Fisher's exact test), Q value = 0.45

Table S929.  Gene #83: 'BCORL1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
BCORL1 MUTATED 2 13 9
BCORL1 WILD-TYPE 87 147 129
'BCORL1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.447 (Fisher's exact test), Q value = 0.77

Table S930.  Gene #83: 'BCORL1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
BCORL1 MUTATED 13 9 2
BCORL1 WILD-TYPE 169 124 70
'BCORL1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0182 (Fisher's exact test), Q value = 0.13

Table S931.  Gene #83: 'BCORL1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
BCORL1 MUTATED 4 8 10 5
BCORL1 WILD-TYPE 108 88 82 181

Figure S368.  Get High-res Image Gene #83: 'BCORL1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'BCORL1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S932.  Gene #83: 'BCORL1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
BCORL1 MUTATED 4 1 13 1 1 1 6
BCORL1 WILD-TYPE 56 49 36 39 62 124 93

Figure S369.  Get High-res Image Gene #83: 'BCORL1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'BCORL1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.124 (Fisher's exact test), Q value = 0.39

Table S933.  Gene #83: 'BCORL1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
BCORL1 MUTATED 12 5 1 9
BCORL1 WILD-TYPE 118 73 67 187
'BCORL1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.237 (Fisher's exact test), Q value = 0.56

Table S934.  Gene #83: 'BCORL1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
BCORL1 MUTATED 3 7 2 2 7 2 1 1 2
BCORL1 WILD-TYPE 37 55 26 78 62 46 42 27 72
'BCORL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00803 (Fisher's exact test), Q value = 0.084

Table S935.  Gene #83: 'BCORL1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
BCORL1 MUTATED 2 1 0 5
BCORL1 WILD-TYPE 31 30 27 14

Figure S370.  Get High-res Image Gene #83: 'BCORL1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'BCORL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.694 (Fisher's exact test), Q value = 0.97

Table S936.  Gene #83: 'BCORL1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
BCORL1 MUTATED 4 0 3 1
BCORL1 WILD-TYPE 50 10 21 21
'SETD2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0105 (Fisher's exact test), Q value = 0.098

Table S937.  Gene #84: 'SETD2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
SETD2 MUTATED 5 0 2 5
SETD2 WILD-TYPE 41 58 62 38

Figure S371.  Get High-res Image Gene #84: 'SETD2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'SETD2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.024 (Fisher's exact test), Q value = 0.16

Table S938.  Gene #84: 'SETD2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
SETD2 MUTATED 6 1 5
SETD2 WILD-TYPE 45 82 72

Figure S372.  Get High-res Image Gene #84: 'SETD2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'SETD2 MUTATION STATUS' versus 'CN_CNMF'

P value = 4e-05 (Fisher's exact test), Q value = 0.0027

Table S939.  Gene #84: 'SETD2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
SETD2 MUTATED 32 9 4 0
SETD2 WILD-TYPE 146 174 97 20

Figure S373.  Get High-res Image Gene #84: 'SETD2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'SETD2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 4e-04 (Fisher's exact test), Q value = 0.013

Table S940.  Gene #84: 'SETD2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
SETD2 MUTATED 11 2 21
SETD2 WILD-TYPE 76 78 79

Figure S374.  Get High-res Image Gene #84: 'SETD2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'SETD2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.856 (Fisher's exact test), Q value = 1

Table S941.  Gene #84: 'SETD2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
SETD2 MUTATED 7 15 14
SETD2 WILD-TYPE 82 145 124
'SETD2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.5 (Fisher's exact test), Q value = 0.83

Table S942.  Gene #84: 'SETD2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
SETD2 MUTATED 18 14 4
SETD2 WILD-TYPE 164 119 68
'SETD2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00112 (Fisher's exact test), Q value = 0.026

Table S943.  Gene #84: 'SETD2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
SETD2 MUTATED 8 19 10 9
SETD2 WILD-TYPE 104 77 82 177

Figure S375.  Get High-res Image Gene #84: 'SETD2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'SETD2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 2e-05 (Fisher's exact test), Q value = 0.0017

Table S944.  Gene #84: 'SETD2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
SETD2 MUTATED 6 8 12 3 6 1 10
SETD2 WILD-TYPE 54 42 37 37 57 124 89

Figure S376.  Get High-res Image Gene #84: 'SETD2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'SETD2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S945.  Gene #84: 'SETD2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
SETD2 MUTATED 27 6 0 11
SETD2 WILD-TYPE 103 72 68 185

Figure S377.  Get High-res Image Gene #84: 'SETD2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'SETD2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00048 (Fisher's exact test), Q value = 0.015

Table S946.  Gene #84: 'SETD2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
SETD2 MUTATED 10 6 2 8 13 1 1 1 2
SETD2 WILD-TYPE 30 56 26 72 56 47 42 27 72

Figure S378.  Get High-res Image Gene #84: 'SETD2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'SETD2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.833 (Fisher's exact test), Q value = 1

Table S947.  Gene #84: 'SETD2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
SETD2 MUTATED 3 3 2 3
SETD2 WILD-TYPE 30 28 25 16
'SETD2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.79 (Fisher's exact test), Q value = 1

Table S948.  Gene #84: 'SETD2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
SETD2 MUTATED 7 1 2 1
SETD2 WILD-TYPE 47 9 22 21
'MAP4K3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.133 (Fisher's exact test), Q value = 0.41

Table S949.  Gene #85: 'MAP4K3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
MAP4K3 MUTATED 1 0 1 3
MAP4K3 WILD-TYPE 45 58 63 40
'MAP4K3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.635 (Fisher's exact test), Q value = 0.93

Table S950.  Gene #85: 'MAP4K3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
MAP4K3 MUTATED 2 1 2
MAP4K3 WILD-TYPE 49 82 75
'MAP4K3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0318 (Fisher's exact test), Q value = 0.18

Table S951.  Gene #85: 'MAP4K3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
MAP4K3 MUTATED 14 3 4 0
MAP4K3 WILD-TYPE 164 180 97 20

Figure S379.  Get High-res Image Gene #85: 'MAP4K3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'MAP4K3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0992 (Fisher's exact test), Q value = 0.35

Table S952.  Gene #85: 'MAP4K3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
MAP4K3 MUTATED 4 2 10
MAP4K3 WILD-TYPE 83 78 90
'MAP4K3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.214 (Fisher's exact test), Q value = 0.52

Table S953.  Gene #85: 'MAP4K3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
MAP4K3 MUTATED 2 6 10
MAP4K3 WILD-TYPE 87 154 128
'MAP4K3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.734 (Fisher's exact test), Q value = 1

Table S954.  Gene #85: 'MAP4K3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
MAP4K3 MUTATED 10 6 2
MAP4K3 WILD-TYPE 172 127 70
'MAP4K3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0628 (Fisher's exact test), Q value = 0.27

Table S955.  Gene #85: 'MAP4K3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
MAP4K3 MUTATED 3 4 9 5
MAP4K3 WILD-TYPE 109 92 83 181
'MAP4K3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00033 (Fisher's exact test), Q value = 0.012

Table S956.  Gene #85: 'MAP4K3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
MAP4K3 MUTATED 2 0 7 3 4 0 5
MAP4K3 WILD-TYPE 58 50 42 37 59 125 94

Figure S380.  Get High-res Image Gene #85: 'MAP4K3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'MAP4K3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0551 (Fisher's exact test), Q value = 0.26

Table S957.  Gene #85: 'MAP4K3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
MAP4K3 MUTATED 9 5 0 6
MAP4K3 WILD-TYPE 121 73 68 190
'MAP4K3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0865 (Fisher's exact test), Q value = 0.32

Table S958.  Gene #85: 'MAP4K3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
MAP4K3 MUTATED 2 4 3 3 6 1 1 0 0
MAP4K3 WILD-TYPE 38 58 25 77 63 47 42 28 74
'MAP4K3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.189 (Fisher's exact test), Q value = 0.49

Table S959.  Gene #85: 'MAP4K3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
MAP4K3 MUTATED 2 2 0 3
MAP4K3 WILD-TYPE 31 29 27 16
'MAP4K3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.342 (Fisher's exact test), Q value = 0.67

Table S960.  Gene #85: 'MAP4K3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
MAP4K3 MUTATED 6 0 1 0
MAP4K3 WILD-TYPE 48 10 23 22
'SLC12A6 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00083 (Fisher's exact test), Q value = 0.022

Table S961.  Gene #86: 'SLC12A6 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
SLC12A6 MUTATED 1 0 0 5
SLC12A6 WILD-TYPE 45 58 64 38

Figure S381.  Get High-res Image Gene #86: 'SLC12A6 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'SLC12A6 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.579 (Fisher's exact test), Q value = 0.88

Table S962.  Gene #86: 'SLC12A6 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
SLC12A6 MUTATED 2 1 3
SLC12A6 WILD-TYPE 49 82 74
'SLC12A6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00035 (Fisher's exact test), Q value = 0.012

Table S963.  Gene #86: 'SLC12A6 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
SLC12A6 MUTATED 20 3 2 1
SLC12A6 WILD-TYPE 158 180 99 19

Figure S382.  Get High-res Image Gene #86: 'SLC12A6 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'SLC12A6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0783 (Fisher's exact test), Q value = 0.3

Table S964.  Gene #86: 'SLC12A6 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
SLC12A6 MUTATED 7 2 11
SLC12A6 WILD-TYPE 80 78 89
'SLC12A6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.673 (Fisher's exact test), Q value = 0.95

Table S965.  Gene #86: 'SLC12A6 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
SLC12A6 MUTATED 4 7 9
SLC12A6 WILD-TYPE 85 153 129
'SLC12A6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.288 (Fisher's exact test), Q value = 0.62

Table S966.  Gene #86: 'SLC12A6 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
SLC12A6 MUTATED 11 8 1
SLC12A6 WILD-TYPE 171 125 71
'SLC12A6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00668 (Fisher's exact test), Q value = 0.075

Table S967.  Gene #86: 'SLC12A6 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
SLC12A6 MUTATED 2 11 7 6
SLC12A6 WILD-TYPE 110 85 85 180

Figure S383.  Get High-res Image Gene #86: 'SLC12A6 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'SLC12A6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S968.  Gene #86: 'SLC12A6 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
SLC12A6 MUTATED 4 5 9 3 0 0 5
SLC12A6 WILD-TYPE 56 45 40 37 63 125 94

Figure S384.  Get High-res Image Gene #86: 'SLC12A6 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'SLC12A6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0675 (Fisher's exact test), Q value = 0.28

Table S969.  Gene #86: 'SLC12A6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
SLC12A6 MUTATED 13 2 2 8
SLC12A6 WILD-TYPE 117 76 66 188
'SLC12A6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0629 (Fisher's exact test), Q value = 0.27

Table S970.  Gene #86: 'SLC12A6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
SLC12A6 MUTATED 3 5 3 3 6 0 4 0 1
SLC12A6 WILD-TYPE 37 57 25 77 63 48 39 28 73
'SLC12A6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00815 (Fisher's exact test), Q value = 0.084

Table S971.  Gene #86: 'SLC12A6 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
SLC12A6 MUTATED 2 1 0 5
SLC12A6 WILD-TYPE 31 30 27 14

Figure S385.  Get High-res Image Gene #86: 'SLC12A6 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'SLC12A6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.221 (Fisher's exact test), Q value = 0.53

Table S972.  Gene #86: 'SLC12A6 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
SLC12A6 MUTATED 7 0 1 0
SLC12A6 WILD-TYPE 47 10 23 22
'CDK12 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.281 (Fisher's exact test), Q value = 0.61

Table S973.  Gene #87: 'CDK12 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
CDK12 MUTATED 3 1 1 3
CDK12 WILD-TYPE 43 57 63 40
'CDK12 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.596 (Fisher's exact test), Q value = 0.9

Table S974.  Gene #87: 'CDK12 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
CDK12 MUTATED 3 3 2
CDK12 WILD-TYPE 48 80 75
'CDK12 MUTATION STATUS' versus 'CN_CNMF'

P value = 7e-04 (Fisher's exact test), Q value = 0.019

Table S975.  Gene #87: 'CDK12 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
CDK12 MUTATED 23 5 4 0
CDK12 WILD-TYPE 155 178 97 20

Figure S386.  Get High-res Image Gene #87: 'CDK12 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'CDK12 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0918 (Fisher's exact test), Q value = 0.33

Table S976.  Gene #87: 'CDK12 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
CDK12 MUTATED 6 4 14
CDK12 WILD-TYPE 81 76 86
'CDK12 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.757 (Fisher's exact test), Q value = 1

Table S977.  Gene #87: 'CDK12 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
CDK12 MUTATED 7 9 10
CDK12 WILD-TYPE 82 151 128
'CDK12 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S978.  Gene #87: 'CDK12 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
CDK12 MUTATED 12 9 5
CDK12 WILD-TYPE 170 124 67
'CDK12 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00374 (Fisher's exact test), Q value = 0.056

Table S979.  Gene #87: 'CDK12 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
CDK12 MUTATED 5 15 6 7
CDK12 WILD-TYPE 107 81 86 179

Figure S387.  Get High-res Image Gene #87: 'CDK12 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'CDK12 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00072 (Fisher's exact test), Q value = 0.02

Table S980.  Gene #87: 'CDK12 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
CDK12 MUTATED 1 4 11 4 3 3 7
CDK12 WILD-TYPE 59 46 38 36 60 122 92

Figure S388.  Get High-res Image Gene #87: 'CDK12 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CDK12 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.126 (Fisher's exact test), Q value = 0.4

Table S981.  Gene #87: 'CDK12 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
CDK12 MUTATED 14 2 3 13
CDK12 WILD-TYPE 116 76 65 183
'CDK12 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.04 (Fisher's exact test), Q value = 0.21

Table S982.  Gene #87: 'CDK12 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
CDK12 MUTATED 4 5 4 3 9 1 4 1 1
CDK12 WILD-TYPE 36 57 24 77 60 47 39 27 73

Figure S389.  Get High-res Image Gene #87: 'CDK12 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'CDK12 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0581 (Fisher's exact test), Q value = 0.26

Table S983.  Gene #87: 'CDK12 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
CDK12 MUTATED 0 1 2 3
CDK12 WILD-TYPE 33 30 25 16
'CDK12 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0921 (Fisher's exact test), Q value = 0.33

Table S984.  Gene #87: 'CDK12 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
CDK12 MUTATED 2 2 2 0
CDK12 WILD-TYPE 52 8 22 22
'NEXN MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00833 (Fisher's exact test), Q value = 0.085

Table S985.  Gene #88: 'NEXN MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
NEXN MUTATED 0 1 0 4
NEXN WILD-TYPE 46 57 64 39

Figure S390.  Get High-res Image Gene #88: 'NEXN MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'NEXN MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.638 (Fisher's exact test), Q value = 0.93

Table S986.  Gene #88: 'NEXN MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
NEXN MUTATED 1 1 3
NEXN WILD-TYPE 50 82 74
'NEXN MUTATION STATUS' versus 'CN_CNMF'

P value = 0.243 (Fisher's exact test), Q value = 0.57

Table S987.  Gene #88: 'NEXN MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
NEXN MUTATED 12 5 3 0
NEXN WILD-TYPE 166 178 98 20
'NEXN MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.797 (Fisher's exact test), Q value = 1

Table S988.  Gene #88: 'NEXN MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
NEXN MUTATED 4 4 7
NEXN WILD-TYPE 83 76 93
'NEXN MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0233 (Fisher's exact test), Q value = 0.16

Table S989.  Gene #88: 'NEXN MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
NEXN MUTATED 0 11 7
NEXN WILD-TYPE 89 149 131

Figure S391.  Get High-res Image Gene #88: 'NEXN MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'NEXN MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0369 (Fisher's exact test), Q value = 0.2

Table S990.  Gene #88: 'NEXN MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
NEXN MUTATED 8 10 0
NEXN WILD-TYPE 174 123 72

Figure S392.  Get High-res Image Gene #88: 'NEXN MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'NEXN MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.743 (Fisher's exact test), Q value = 1

Table S991.  Gene #88: 'NEXN MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
NEXN MUTATED 4 5 5 6
NEXN WILD-TYPE 108 91 87 180
'NEXN MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0989 (Fisher's exact test), Q value = 0.35

Table S992.  Gene #88: 'NEXN MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
NEXN MUTATED 4 2 2 1 6 1 4
NEXN WILD-TYPE 56 48 47 39 57 124 95
'NEXN MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.265 (Fisher's exact test), Q value = 0.59

Table S993.  Gene #88: 'NEXN MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
NEXN MUTATED 5 6 2 5
NEXN WILD-TYPE 125 72 66 191
'NEXN MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.31 (Fisher's exact test), Q value = 0.64

Table S994.  Gene #88: 'NEXN MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
NEXN MUTATED 2 6 2 2 3 1 1 0 1
NEXN WILD-TYPE 38 56 26 78 66 47 42 28 73
'NEXN MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.672 (Fisher's exact test), Q value = 0.95

Table S995.  Gene #88: 'NEXN MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
NEXN MUTATED 3 3 2 0
NEXN WILD-TYPE 30 28 25 19
'NEXN MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.2 (Fisher's exact test), Q value = 0.5

Table S996.  Gene #88: 'NEXN MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
NEXN MUTATED 4 2 2 0
NEXN WILD-TYPE 50 8 22 22
'GMPS MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00689 (Fisher's exact test), Q value = 0.076

Table S997.  Gene #89: 'GMPS MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
GMPS MUTATED 4 0 0 2
GMPS WILD-TYPE 42 58 64 41

Figure S393.  Get High-res Image Gene #89: 'GMPS MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'GMPS MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.337 (Fisher's exact test), Q value = 0.66

Table S998.  Gene #89: 'GMPS MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
GMPS MUTATED 3 2 1
GMPS WILD-TYPE 48 81 76
'GMPS MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0204 (Fisher's exact test), Q value = 0.14

Table S999.  Gene #89: 'GMPS MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
GMPS MUTATED 12 2 2 1
GMPS WILD-TYPE 166 181 99 19

Figure S394.  Get High-res Image Gene #89: 'GMPS MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'GMPS MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.399 (Fisher's exact test), Q value = 0.72

Table S1000.  Gene #89: 'GMPS MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
GMPS MUTATED 6 2 4
GMPS WILD-TYPE 81 78 96
'GMPS MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00796 (Fisher's exact test), Q value = 0.084

Table S1001.  Gene #89: 'GMPS MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
GMPS MUTATED 0 4 10
GMPS WILD-TYPE 89 156 128

Figure S395.  Get High-res Image Gene #89: 'GMPS MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'GMPS MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.77 (Fisher's exact test), Q value = 1

Table S1002.  Gene #89: 'GMPS MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
GMPS MUTATED 8 4 2
GMPS WILD-TYPE 174 129 70
'GMPS MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.576 (Fisher's exact test), Q value = 0.88

Table S1003.  Gene #89: 'GMPS MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
GMPS MUTATED 2 3 5 7
GMPS WILD-TYPE 110 93 87 179
'GMPS MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.428 (Fisher's exact test), Q value = 0.76

Table S1004.  Gene #89: 'GMPS MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
GMPS MUTATED 1 2 4 1 2 2 5
GMPS WILD-TYPE 59 48 45 39 61 123 94
'GMPS MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.296 (Fisher's exact test), Q value = 0.62

Table S1005.  Gene #89: 'GMPS MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
GMPS MUTATED 4 4 0 8
GMPS WILD-TYPE 126 74 68 188
'GMPS MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.436 (Fisher's exact test), Q value = 0.76

Table S1006.  Gene #89: 'GMPS MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
GMPS MUTATED 1 4 2 3 4 0 1 0 1
GMPS WILD-TYPE 39 58 26 77 65 48 42 28 73
'GMPS MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.039 (Fisher's exact test), Q value = 0.21

Table S1007.  Gene #89: 'GMPS MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
GMPS MUTATED 0 3 0 0
GMPS WILD-TYPE 33 28 27 19

Figure S396.  Get High-res Image Gene #89: 'GMPS MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'GMPS MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.378 (Fisher's exact test), Q value = 0.71

Table S1008.  Gene #89: 'GMPS MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
GMPS MUTATED 2 1 0 0
GMPS WILD-TYPE 52 9 24 22
'PTGDR MUTATION STATUS' versus 'CN_CNMF'

P value = 0.424 (Fisher's exact test), Q value = 0.75

Table S1009.  Gene #90: 'PTGDR MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
PTGDR MUTATED 4 5 0 0
PTGDR WILD-TYPE 174 178 101 20
'PTGDR MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.495 (Fisher's exact test), Q value = 0.82

Table S1010.  Gene #90: 'PTGDR MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
PTGDR MUTATED 4 1 3
PTGDR WILD-TYPE 83 79 97
'PTGDR MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.173 (Fisher's exact test), Q value = 0.47

Table S1011.  Gene #90: 'PTGDR MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
PTGDR MUTATED 0 6 3
PTGDR WILD-TYPE 89 154 135
'PTGDR MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.297 (Fisher's exact test), Q value = 0.63

Table S1012.  Gene #90: 'PTGDR MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
PTGDR MUTATED 4 5 0
PTGDR WILD-TYPE 178 128 72
'PTGDR MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.967 (Fisher's exact test), Q value = 1

Table S1013.  Gene #90: 'PTGDR MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
PTGDR MUTATED 2 2 2 3
PTGDR WILD-TYPE 110 94 90 183
'PTGDR MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.391 (Fisher's exact test), Q value = 0.72

Table S1014.  Gene #90: 'PTGDR MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
PTGDR MUTATED 2 2 2 0 1 1 1
PTGDR WILD-TYPE 58 48 47 40 62 124 98
'PTGDR MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.475 (Fisher's exact test), Q value = 0.8

Table S1015.  Gene #90: 'PTGDR MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
PTGDR MUTATED 4 2 0 3
PTGDR WILD-TYPE 126 76 68 193
'PTGDR MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.779 (Fisher's exact test), Q value = 1

Table S1016.  Gene #90: 'PTGDR MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
PTGDR MUTATED 2 2 1 1 1 1 0 0 1
PTGDR WILD-TYPE 38 60 27 79 68 47 43 28 73
'PRPS1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.526 (Fisher's exact test), Q value = 0.85

Table S1017.  Gene #91: 'PRPS1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
PRPS1 MUTATED 4 3 1 1
PRPS1 WILD-TYPE 174 180 100 19
'PRPS1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.493 (Fisher's exact test), Q value = 0.82

Table S1018.  Gene #91: 'PRPS1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
PRPS1 MUTATED 4 1 3
PRPS1 WILD-TYPE 83 79 97
'PRPS1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.423 (Fisher's exact test), Q value = 0.75

Table S1019.  Gene #91: 'PRPS1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
PRPS1 MUTATED 2 2 5
PRPS1 WILD-TYPE 87 158 133
'PRPS1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.33 (Fisher's exact test), Q value = 0.66

Table S1020.  Gene #91: 'PRPS1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
PRPS1 MUTATED 6 1 2
PRPS1 WILD-TYPE 176 132 70
'PRPS1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.26 (Fisher's exact test), Q value = 0.58

Table S1021.  Gene #91: 'PRPS1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
PRPS1 MUTATED 1 4 2 2
PRPS1 WILD-TYPE 111 92 90 184
'PRPS1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0848 (Fisher's exact test), Q value = 0.31

Table S1022.  Gene #91: 'PRPS1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
PRPS1 MUTATED 1 0 3 2 1 2 0
PRPS1 WILD-TYPE 59 50 46 38 62 123 99
'PRPS1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0818 (Fisher's exact test), Q value = 0.31

Table S1023.  Gene #91: 'PRPS1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
PRPS1 MUTATED 6 1 0 2
PRPS1 WILD-TYPE 124 77 68 194
'PRPS1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.266 (Fisher's exact test), Q value = 0.59

Table S1024.  Gene #91: 'PRPS1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
PRPS1 MUTATED 2 1 0 4 2 0 0 0 0
PRPS1 WILD-TYPE 38 61 28 76 67 48 43 28 74
'BIRC3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0159 (Fisher's exact test), Q value = 0.13

Table S1025.  Gene #92: 'BIRC3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
BIRC3 MUTATED 1 0 0 3
BIRC3 WILD-TYPE 45 58 64 40

Figure S397.  Get High-res Image Gene #92: 'BIRC3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'BIRC3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.557 (Fisher's exact test), Q value = 0.87

Table S1026.  Gene #92: 'BIRC3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
BIRC3 MUTATED 2 1 1
BIRC3 WILD-TYPE 49 82 76
'BIRC3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.205 (Fisher's exact test), Q value = 0.51

Table S1027.  Gene #92: 'BIRC3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
BIRC3 MUTATED 9 3 2 1
BIRC3 WILD-TYPE 169 180 99 19
'BIRC3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.616 (Fisher's exact test), Q value = 0.91

Table S1028.  Gene #92: 'BIRC3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
BIRC3 MUTATED 5 2 5
BIRC3 WILD-TYPE 82 78 95
'BIRC3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.871 (Fisher's exact test), Q value = 1

Table S1029.  Gene #92: 'BIRC3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
BIRC3 MUTATED 2 6 4
BIRC3 WILD-TYPE 87 154 134
'BIRC3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.745 (Fisher's exact test), Q value = 1

Table S1030.  Gene #92: 'BIRC3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
BIRC3 MUTATED 6 5 1
BIRC3 WILD-TYPE 176 128 71
'BIRC3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.502 (Fisher's exact test), Q value = 0.83

Table S1031.  Gene #92: 'BIRC3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
BIRC3 MUTATED 4 5 2 4
BIRC3 WILD-TYPE 108 91 90 182
'BIRC3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0319 (Fisher's exact test), Q value = 0.18

Table S1032.  Gene #92: 'BIRC3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
BIRC3 MUTATED 3 1 4 2 1 0 4
BIRC3 WILD-TYPE 57 49 45 38 62 125 95

Figure S398.  Get High-res Image Gene #92: 'BIRC3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'BIRC3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.466 (Fisher's exact test), Q value = 0.79

Table S1033.  Gene #92: 'BIRC3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
BIRC3 MUTATED 7 2 1 5
BIRC3 WILD-TYPE 123 76 67 191
'BIRC3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.362 (Fisher's exact test), Q value = 0.69

Table S1034.  Gene #92: 'BIRC3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
BIRC3 MUTATED 2 2 2 2 4 1 2 0 0
BIRC3 WILD-TYPE 38 60 26 78 65 47 41 28 74
'BIRC3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.593 (Fisher's exact test), Q value = 0.9

Table S1035.  Gene #92: 'BIRC3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
BIRC3 MUTATED 2 0 1 1
BIRC3 WILD-TYPE 31 31 26 18
'BIRC3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.671 (Fisher's exact test), Q value = 0.95

Table S1036.  Gene #92: 'BIRC3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
BIRC3 MUTATED 2 0 2 0
BIRC3 WILD-TYPE 52 10 22 22
'IDH1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.121 (Fisher's exact test), Q value = 0.39

Table S1037.  Gene #93: 'IDH1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
IDH1 MUTATED 2 0 0 1
IDH1 WILD-TYPE 44 58 64 42
'IDH1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0136 (Fisher's exact test), Q value = 0.12

Table S1038.  Gene #93: 'IDH1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
IDH1 MUTATED 3 0 0
IDH1 WILD-TYPE 48 83 77

Figure S399.  Get High-res Image Gene #93: 'IDH1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'IDH1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.236 (Fisher's exact test), Q value = 0.56

Table S1039.  Gene #93: 'IDH1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
IDH1 MUTATED 12 5 3 1
IDH1 WILD-TYPE 166 178 98 19
'IDH1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.533 (Fisher's exact test), Q value = 0.85

Table S1040.  Gene #93: 'IDH1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
IDH1 MUTATED 8 4 6
IDH1 WILD-TYPE 79 76 94
'IDH1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.673 (Fisher's exact test), Q value = 0.95

Table S1041.  Gene #93: 'IDH1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
IDH1 MUTATED 4 7 9
IDH1 WILD-TYPE 85 153 129
'IDH1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.489 (Fisher's exact test), Q value = 0.82

Table S1042.  Gene #93: 'IDH1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
IDH1 MUTATED 12 6 2
IDH1 WILD-TYPE 170 127 70
'IDH1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.009 (Fisher's exact test), Q value = 0.089

Table S1043.  Gene #93: 'IDH1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
IDH1 MUTATED 3 6 9 3
IDH1 WILD-TYPE 109 90 83 183

Figure S400.  Get High-res Image Gene #93: 'IDH1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'IDH1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00151 (Fisher's exact test), Q value = 0.032

Table S1044.  Gene #93: 'IDH1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
IDH1 MUTATED 2 2 4 2 8 0 3
IDH1 WILD-TYPE 58 48 45 38 55 125 96

Figure S401.  Get High-res Image Gene #93: 'IDH1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'IDH1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00422 (Fisher's exact test), Q value = 0.059

Table S1045.  Gene #93: 'IDH1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
IDH1 MUTATED 10 7 1 3
IDH1 WILD-TYPE 120 71 67 193

Figure S402.  Get High-res Image Gene #93: 'IDH1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'IDH1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.105 (Fisher's exact test), Q value = 0.36

Table S1046.  Gene #93: 'IDH1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
IDH1 MUTATED 3 6 0 2 5 2 2 1 0
IDH1 WILD-TYPE 37 56 28 78 64 46 41 27 74
'IDH1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0453 (Fisher's exact test), Q value = 0.23

Table S1047.  Gene #93: 'IDH1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
IDH1 MUTATED 2 6 0 3
IDH1 WILD-TYPE 31 25 27 16

Figure S403.  Get High-res Image Gene #93: 'IDH1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'IDH1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1048.  Gene #93: 'IDH1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
IDH1 MUTATED 6 1 2 2
IDH1 WILD-TYPE 48 9 22 20
'ZNF486 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0641 (Fisher's exact test), Q value = 0.27

Table S1049.  Gene #94: 'ZNF486 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ZNF486 MUTATED 1 0 0 2
ZNF486 WILD-TYPE 45 58 64 41
'ZNF486 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.183 (Fisher's exact test), Q value = 0.48

Table S1050.  Gene #94: 'ZNF486 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ZNF486 MUTATED 2 0 1
ZNF486 WILD-TYPE 49 83 76
'ZNF486 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0449 (Fisher's exact test), Q value = 0.23

Table S1051.  Gene #94: 'ZNF486 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ZNF486 MUTATED 10 2 1 0
ZNF486 WILD-TYPE 168 181 100 20

Figure S404.  Get High-res Image Gene #94: 'ZNF486 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ZNF486 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00285 (Fisher's exact test), Q value = 0.048

Table S1052.  Gene #94: 'ZNF486 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ZNF486 MUTATED 0 1 8
ZNF486 WILD-TYPE 87 79 92

Figure S405.  Get High-res Image Gene #94: 'ZNF486 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'ZNF486 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.896 (Fisher's exact test), Q value = 1

Table S1053.  Gene #94: 'ZNF486 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ZNF486 MUTATED 2 3 2
ZNF486 WILD-TYPE 87 157 136
'ZNF486 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.885 (Fisher's exact test), Q value = 1

Table S1054.  Gene #94: 'ZNF486 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ZNF486 MUTATED 3 3 1
ZNF486 WILD-TYPE 179 130 71
'ZNF486 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.357 (Fisher's exact test), Q value = 0.69

Table S1055.  Gene #94: 'ZNF486 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ZNF486 MUTATED 2 4 4 3
ZNF486 WILD-TYPE 110 92 88 183
'ZNF486 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 9e-05 (Fisher's exact test), Q value = 0.0048

Table S1056.  Gene #94: 'ZNF486 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ZNF486 MUTATED 3 1 7 0 0 0 2
ZNF486 WILD-TYPE 57 49 42 40 63 125 97

Figure S406.  Get High-res Image Gene #94: 'ZNF486 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ZNF486 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.267 (Fisher's exact test), Q value = 0.59

Table S1057.  Gene #94: 'ZNF486 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ZNF486 MUTATED 6 1 0 6
ZNF486 WILD-TYPE 124 77 68 190
'ZNF486 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0332 (Fisher's exact test), Q value = 0.19

Table S1058.  Gene #94: 'ZNF486 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ZNF486 MUTATED 1 2 2 1 5 0 0 2 0
ZNF486 WILD-TYPE 39 60 26 79 64 48 43 26 74

Figure S407.  Get High-res Image Gene #94: 'ZNF486 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'ATM MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00111 (Fisher's exact test), Q value = 0.026

Table S1059.  Gene #95: 'ATM MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ATM MUTATED 9 1 5 10
ATM WILD-TYPE 37 57 59 33

Figure S408.  Get High-res Image Gene #95: 'ATM MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'ATM MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0521 (Fisher's exact test), Q value = 0.25

Table S1060.  Gene #95: 'ATM MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ATM MUTATED 10 5 10
ATM WILD-TYPE 41 78 67
'ATM MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00422 (Fisher's exact test), Q value = 0.059

Table S1061.  Gene #95: 'ATM MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ATM MUTATED 75 47 29 4
ATM WILD-TYPE 103 136 72 16

Figure S409.  Get High-res Image Gene #95: 'ATM MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ATM MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0405 (Fisher's exact test), Q value = 0.21

Table S1062.  Gene #95: 'ATM MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ATM MUTATED 37 33 58
ATM WILD-TYPE 50 47 42

Figure S410.  Get High-res Image Gene #95: 'ATM MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'ATM MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00541 (Fisher's exact test), Q value = 0.066

Table S1063.  Gene #95: 'ATM MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ATM MUTATED 18 54 56
ATM WILD-TYPE 71 106 82

Figure S411.  Get High-res Image Gene #95: 'ATM MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'ATM MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.422 (Fisher's exact test), Q value = 0.75

Table S1064.  Gene #95: 'ATM MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ATM MUTATED 64 45 19
ATM WILD-TYPE 118 88 53
'ATM MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S1065.  Gene #95: 'ATM MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ATM MUTATED 44 49 36 27
ATM WILD-TYPE 68 47 56 159

Figure S412.  Get High-res Image Gene #95: 'ATM MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'ATM MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S1066.  Gene #95: 'ATM MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ATM MUTATED 30 30 31 17 20 9 19
ATM WILD-TYPE 30 20 18 23 43 116 80

Figure S413.  Get High-res Image Gene #95: 'ATM MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ATM MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S1067.  Gene #95: 'ATM MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ATM MUTATED 77 22 18 38
ATM WILD-TYPE 53 56 50 158

Figure S414.  Get High-res Image Gene #95: 'ATM MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'ATM MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S1068.  Gene #95: 'ATM MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ATM MUTATED 24 23 15 21 29 17 17 1 8
ATM WILD-TYPE 16 39 13 59 40 31 26 27 66

Figure S415.  Get High-res Image Gene #95: 'ATM MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'ATM MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0168 (Fisher's exact test), Q value = 0.13

Table S1069.  Gene #95: 'ATM MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
ATM MUTATED 14 6 9 12
ATM WILD-TYPE 19 25 18 7

Figure S416.  Get High-res Image Gene #95: 'ATM MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'ATM MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.223 (Fisher's exact test), Q value = 0.54

Table S1070.  Gene #95: 'ATM MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
ATM MUTATED 19 2 13 7
ATM WILD-TYPE 35 8 11 15
'HIST1H1T MUTATION STATUS' versus 'CN_CNMF'

P value = 0.738 (Fisher's exact test), Q value = 1

Table S1071.  Gene #96: 'HIST1H1T MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
HIST1H1T MUTATED 5 4 1 0
HIST1H1T WILD-TYPE 173 179 100 20
'HIST1H1T MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.852 (Fisher's exact test), Q value = 1

Table S1072.  Gene #96: 'HIST1H1T MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
HIST1H1T MUTATED 4 2 4
HIST1H1T WILD-TYPE 83 78 96
'HIST1H1T MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.193 (Fisher's exact test), Q value = 0.5

Table S1073.  Gene #96: 'HIST1H1T MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
HIST1H1T MUTATED 1 2 6
HIST1H1T WILD-TYPE 88 158 132
'HIST1H1T MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.605 (Fisher's exact test), Q value = 0.91

Table S1074.  Gene #96: 'HIST1H1T MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
HIST1H1T MUTATED 6 2 1
HIST1H1T WILD-TYPE 176 131 71
'HIST1H1T MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00147 (Fisher's exact test), Q value = 0.031

Table S1075.  Gene #96: 'HIST1H1T MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
HIST1H1T MUTATED 1 6 3 0
HIST1H1T WILD-TYPE 111 90 89 186

Figure S417.  Get High-res Image Gene #96: 'HIST1H1T MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'HIST1H1T MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00707 (Fisher's exact test), Q value = 0.077

Table S1076.  Gene #96: 'HIST1H1T MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
HIST1H1T MUTATED 2 3 3 1 1 0 0
HIST1H1T WILD-TYPE 58 47 46 39 62 125 99

Figure S418.  Get High-res Image Gene #96: 'HIST1H1T MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'HIST1H1T MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00568 (Fisher's exact test), Q value = 0.068

Table S1077.  Gene #96: 'HIST1H1T MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
HIST1H1T MUTATED 5 4 1 0
HIST1H1T WILD-TYPE 125 74 67 196

Figure S419.  Get High-res Image Gene #96: 'HIST1H1T MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'HIST1H1T MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.594 (Fisher's exact test), Q value = 0.9

Table S1078.  Gene #96: 'HIST1H1T MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
HIST1H1T MUTATED 1 2 0 1 2 2 2 0 0
HIST1H1T WILD-TYPE 39 60 28 79 67 46 41 28 74
'HIST1H1T MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1079.  Gene #96: 'HIST1H1T MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
HIST1H1T MUTATED 1 1 1 1
HIST1H1T WILD-TYPE 32 30 26 18
'HIST1H1T MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.267 (Fisher's exact test), Q value = 0.59

Table S1080.  Gene #96: 'HIST1H1T MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
HIST1H1T MUTATED 1 1 1 1
HIST1H1T WILD-TYPE 53 9 23 21
'CREBBP MUTATION STATUS' versus 'MRNA_CNMF'

P value = 2e-05 (Fisher's exact test), Q value = 0.0017

Table S1081.  Gene #97: 'CREBBP MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
CREBBP MUTATED 10 1 0 7
CREBBP WILD-TYPE 36 57 64 36

Figure S420.  Get High-res Image Gene #97: 'CREBBP MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'CREBBP MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00021 (Fisher's exact test), Q value = 0.0086

Table S1082.  Gene #97: 'CREBBP MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
CREBBP MUTATED 12 3 3
CREBBP WILD-TYPE 39 80 74

Figure S421.  Get High-res Image Gene #97: 'CREBBP MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'CREBBP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00012 (Fisher's exact test), Q value = 0.0059

Table S1083.  Gene #97: 'CREBBP MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
CREBBP MUTATED 42 15 9 2
CREBBP WILD-TYPE 136 168 92 18

Figure S422.  Get High-res Image Gene #97: 'CREBBP MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'CREBBP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00019 (Fisher's exact test), Q value = 0.008

Table S1084.  Gene #97: 'CREBBP MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
CREBBP MUTATED 21 4 26
CREBBP WILD-TYPE 66 76 74

Figure S423.  Get High-res Image Gene #97: 'CREBBP MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'CREBBP MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.315 (Fisher's exact test), Q value = 0.64

Table S1085.  Gene #97: 'CREBBP MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
CREBBP MUTATED 9 25 24
CREBBP WILD-TYPE 80 135 114
'CREBBP MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.981 (Fisher's exact test), Q value = 1

Table S1086.  Gene #97: 'CREBBP MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
CREBBP MUTATED 28 20 10
CREBBP WILD-TYPE 154 113 62
'CREBBP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.015 (Fisher's exact test), Q value = 0.12

Table S1087.  Gene #97: 'CREBBP MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
CREBBP MUTATED 13 21 18 18
CREBBP WILD-TYPE 99 75 74 168

Figure S424.  Get High-res Image Gene #97: 'CREBBP MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'CREBBP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S1088.  Gene #97: 'CREBBP MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
CREBBP MUTATED 12 12 14 4 8 2 18
CREBBP WILD-TYPE 48 38 35 36 55 123 81

Figure S425.  Get High-res Image Gene #97: 'CREBBP MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CREBBP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00044 (Fisher's exact test), Q value = 0.014

Table S1089.  Gene #97: 'CREBBP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
CREBBP MUTATED 34 8 5 22
CREBBP WILD-TYPE 96 70 63 174

Figure S426.  Get High-res Image Gene #97: 'CREBBP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'CREBBP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 8e-05 (Fisher's exact test), Q value = 0.0045

Table S1090.  Gene #97: 'CREBBP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
CREBBP MUTATED 7 7 5 13 19 1 11 4 2
CREBBP WILD-TYPE 33 55 23 67 50 47 32 24 72

Figure S427.  Get High-res Image Gene #97: 'CREBBP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'CREBBP MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.274 (Fisher's exact test), Q value = 0.6

Table S1091.  Gene #97: 'CREBBP MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
CREBBP MUTATED 6 3 5 6
CREBBP WILD-TYPE 27 28 22 13
'CREBBP MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.117 (Fisher's exact test), Q value = 0.38

Table S1092.  Gene #97: 'CREBBP MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
CREBBP MUTATED 6 1 6 7
CREBBP WILD-TYPE 48 9 18 15
'GMNN MUTATION STATUS' versus 'CN_CNMF'

P value = 0.424 (Fisher's exact test), Q value = 0.75

Table S1093.  Gene #98: 'GMNN MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
GMNN MUTATED 1 4 0 0
GMNN WILD-TYPE 177 179 101 20
'GMNN MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.558 (Fisher's exact test), Q value = 0.87

Table S1094.  Gene #98: 'GMNN MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
GMNN MUTATED 2 0 2
GMNN WILD-TYPE 85 80 98
'GMNN MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.374 (Fisher's exact test), Q value = 0.7

Table S1095.  Gene #98: 'GMNN MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
GMNN MUTATED 0 2 3
GMNN WILD-TYPE 89 158 135
'GMNN MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.719 (Fisher's exact test), Q value = 0.99

Table S1096.  Gene #98: 'GMNN MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
GMNN MUTATED 3 2 0
GMNN WILD-TYPE 179 131 72
'GMNN MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.349 (Fisher's exact test), Q value = 0.68

Table S1097.  Gene #98: 'GMNN MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
GMNN MUTATED 2 0 2 1
GMNN WILD-TYPE 110 96 90 185
'GMNN MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0393 (Fisher's exact test), Q value = 0.21

Table S1098.  Gene #98: 'GMNN MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
GMNN MUTATED 2 0 0 2 0 0 1
GMNN WILD-TYPE 58 50 49 38 63 125 98

Figure S428.  Get High-res Image Gene #98: 'GMNN MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'GMNN MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.21 (Fisher's exact test), Q value = 0.52

Table S1099.  Gene #98: 'GMNN MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
GMNN MUTATED 2 0 2 1
GMNN WILD-TYPE 128 78 66 195
'GMNN MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.167 (Fisher's exact test), Q value = 0.46

Table S1100.  Gene #98: 'GMNN MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
GMNN MUTATED 0 0 1 1 0 2 1 0 0
GMNN WILD-TYPE 40 62 27 79 69 46 42 28 74
'CTNNB1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.789 (Fisher's exact test), Q value = 1

Table S1101.  Gene #99: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
CTNNB1 MUTATED 2 3 2 3
CTNNB1 WILD-TYPE 44 55 62 40
'CTNNB1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.261 (Fisher's exact test), Q value = 0.58

Table S1102.  Gene #99: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
CTNNB1 MUTATED 2 2 6
CTNNB1 WILD-TYPE 49 81 71
'CTNNB1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.644 (Fisher's exact test), Q value = 0.93

Table S1103.  Gene #99: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
CTNNB1 MUTATED 37 37 15 4
CTNNB1 WILD-TYPE 141 146 86 16
'CTNNB1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.555 (Fisher's exact test), Q value = 0.87

Table S1104.  Gene #99: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
CTNNB1 MUTATED 29 21 33
CTNNB1 WILD-TYPE 58 59 67
'CTNNB1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 5e-05 (Fisher's exact test), Q value = 0.0032

Table S1105.  Gene #99: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
CTNNB1 MUTATED 7 30 43
CTNNB1 WILD-TYPE 82 130 95

Figure S429.  Get High-res Image Gene #99: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'CTNNB1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0299 (Fisher's exact test), Q value = 0.18

Table S1106.  Gene #99: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
CTNNB1 MUTATED 42 31 7
CTNNB1 WILD-TYPE 140 102 65

Figure S430.  Get High-res Image Gene #99: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'CTNNB1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S1107.  Gene #99: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
CTNNB1 MUTATED 28 26 27 12
CTNNB1 WILD-TYPE 84 70 65 174

Figure S431.  Get High-res Image Gene #99: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'CTNNB1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S1108.  Gene #99: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
CTNNB1 MUTATED 15 19 21 9 16 3 10
CTNNB1 WILD-TYPE 45 31 28 31 47 122 89

Figure S432.  Get High-res Image Gene #99: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CTNNB1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S1109.  Gene #99: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
CTNNB1 MUTATED 45 17 13 16
CTNNB1 WILD-TYPE 85 61 55 180

Figure S433.  Get High-res Image Gene #99: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'CTNNB1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S1110.  Gene #99: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
CTNNB1 MUTATED 15 17 5 14 12 8 16 2 2
CTNNB1 WILD-TYPE 25 45 23 66 57 40 27 26 72

Figure S434.  Get High-res Image Gene #99: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'CTNNB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0557 (Fisher's exact test), Q value = 0.26

Table S1111.  Gene #99: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
CTNNB1 MUTATED 10 5 3 8
CTNNB1 WILD-TYPE 23 26 24 11
'CTNNB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.198 (Fisher's exact test), Q value = 0.5

Table S1112.  Gene #99: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
CTNNB1 MUTATED 16 2 2 6
CTNNB1 WILD-TYPE 38 8 22 16
'KDM6A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.416 (Fisher's exact test), Q value = 0.74

Table S1113.  Gene #100: 'KDM6A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
KDM6A MUTATED 14 8 6 0
KDM6A WILD-TYPE 164 175 95 20
'KDM6A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.545 (Fisher's exact test), Q value = 0.86

Table S1114.  Gene #100: 'KDM6A MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
KDM6A MUTATED 11 6 10
KDM6A WILD-TYPE 76 74 90
'KDM6A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.22 (Fisher's exact test), Q value = 0.53

Table S1115.  Gene #100: 'KDM6A MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
KDM6A MUTATED 5 7 13
KDM6A WILD-TYPE 84 153 125
'KDM6A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.891 (Fisher's exact test), Q value = 1

Table S1116.  Gene #100: 'KDM6A MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
KDM6A MUTATED 13 8 4
KDM6A WILD-TYPE 169 125 68
'KDM6A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00048 (Fisher's exact test), Q value = 0.015

Table S1117.  Gene #100: 'KDM6A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
KDM6A MUTATED 11 5 10 2
KDM6A WILD-TYPE 101 91 82 184

Figure S435.  Get High-res Image Gene #100: 'KDM6A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'KDM6A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S1118.  Gene #100: 'KDM6A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
KDM6A MUTATED 4 5 5 1 11 0 2
KDM6A WILD-TYPE 56 45 44 39 52 125 97

Figure S436.  Get High-res Image Gene #100: 'KDM6A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'KDM6A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00051 (Fisher's exact test), Q value = 0.016

Table S1119.  Gene #100: 'KDM6A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
KDM6A MUTATED 13 9 3 3
KDM6A WILD-TYPE 117 69 65 193

Figure S437.  Get High-res Image Gene #100: 'KDM6A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'KDM6A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.346 (Fisher's exact test), Q value = 0.67

Table S1120.  Gene #100: 'KDM6A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
KDM6A MUTATED 3 7 2 6 2 3 3 1 1
KDM6A WILD-TYPE 37 55 26 74 67 45 40 27 73
'KDM6A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.528 (Fisher's exact test), Q value = 0.85

Table S1121.  Gene #100: 'KDM6A MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
KDM6A MUTATED 3 3 1 0
KDM6A WILD-TYPE 30 28 26 19
'KDM6A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.194 (Fisher's exact test), Q value = 0.5

Table S1122.  Gene #100: 'KDM6A MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
KDM6A MUTATED 2 2 1 2
KDM6A WILD-TYPE 52 8 23 20
'CLSPN MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0982 (Fisher's exact test), Q value = 0.34

Table S1123.  Gene #101: 'CLSPN MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
CLSPN MUTATED 2 1 0 3
CLSPN WILD-TYPE 44 57 64 40
'CLSPN MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.88 (Fisher's exact test), Q value = 1

Table S1124.  Gene #101: 'CLSPN MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
CLSPN MUTATED 1 2 3
CLSPN WILD-TYPE 50 81 74
'CLSPN MUTATION STATUS' versus 'CN_CNMF'

P value = 0.275 (Fisher's exact test), Q value = 0.6

Table S1125.  Gene #101: 'CLSPN MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
CLSPN MUTATED 17 9 6 2
CLSPN WILD-TYPE 161 174 95 18
'CLSPN MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.138 (Fisher's exact test), Q value = 0.41

Table S1126.  Gene #101: 'CLSPN MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
CLSPN MUTATED 14 6 8
CLSPN WILD-TYPE 73 74 92
'CLSPN MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.621 (Fisher's exact test), Q value = 0.92

Table S1127.  Gene #101: 'CLSPN MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
CLSPN MUTATED 5 13 13
CLSPN WILD-TYPE 84 147 125
'CLSPN MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.969 (Fisher's exact test), Q value = 1

Table S1128.  Gene #101: 'CLSPN MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
CLSPN MUTATED 15 10 6
CLSPN WILD-TYPE 167 123 66
'CLSPN MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0125 (Fisher's exact test), Q value = 0.11

Table S1129.  Gene #101: 'CLSPN MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
CLSPN MUTATED 10 8 11 5
CLSPN WILD-TYPE 102 88 81 181

Figure S438.  Get High-res Image Gene #101: 'CLSPN MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'CLSPN MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00466 (Fisher's exact test), Q value = 0.062

Table S1130.  Gene #101: 'CLSPN MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
CLSPN MUTATED 8 5 5 3 8 3 2
CLSPN WILD-TYPE 52 45 44 37 55 122 97

Figure S439.  Get High-res Image Gene #101: 'CLSPN MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CLSPN MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0299 (Fisher's exact test), Q value = 0.18

Table S1131.  Gene #101: 'CLSPN MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
CLSPN MUTATED 12 10 4 7
CLSPN WILD-TYPE 118 68 64 189

Figure S440.  Get High-res Image Gene #101: 'CLSPN MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'CLSPN MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.246 (Fisher's exact test), Q value = 0.57

Table S1132.  Gene #101: 'CLSPN MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
CLSPN MUTATED 2 4 1 8 5 7 4 0 2
CLSPN WILD-TYPE 38 58 27 72 64 41 39 28 72
'CLSPN MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.234 (Fisher's exact test), Q value = 0.55

Table S1133.  Gene #101: 'CLSPN MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
CLSPN MUTATED 5 6 1 1
CLSPN WILD-TYPE 28 25 26 18
'CLSPN MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.301 (Fisher's exact test), Q value = 0.63

Table S1134.  Gene #101: 'CLSPN MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
CLSPN MUTATED 8 0 1 4
CLSPN WILD-TYPE 46 10 23 18
'FRMPD4 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.016 (Fisher's exact test), Q value = 0.13

Table S1135.  Gene #102: 'FRMPD4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
FRMPD4 MUTATED 1 0 0 3
FRMPD4 WILD-TYPE 45 58 64 40

Figure S441.  Get High-res Image Gene #102: 'FRMPD4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'FRMPD4 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.556 (Fisher's exact test), Q value = 0.87

Table S1136.  Gene #102: 'FRMPD4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
FRMPD4 MUTATED 2 1 1
FRMPD4 WILD-TYPE 49 82 76
'FRMPD4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.807 (Fisher's exact test), Q value = 1

Table S1137.  Gene #102: 'FRMPD4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
FRMPD4 MUTATED 15 13 6 2
FRMPD4 WILD-TYPE 163 170 95 18
'FRMPD4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.574 (Fisher's exact test), Q value = 0.88

Table S1138.  Gene #102: 'FRMPD4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
FRMPD4 MUTATED 12 9 9
FRMPD4 WILD-TYPE 75 71 91
'FRMPD4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.89 (Fisher's exact test), Q value = 1

Table S1139.  Gene #102: 'FRMPD4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
FRMPD4 MUTATED 6 13 12
FRMPD4 WILD-TYPE 83 147 126
'FRMPD4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.45 (Fisher's exact test), Q value = 0.78

Table S1140.  Gene #102: 'FRMPD4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
FRMPD4 MUTATED 12 14 5
FRMPD4 WILD-TYPE 170 119 67
'FRMPD4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00918 (Fisher's exact test), Q value = 0.09

Table S1141.  Gene #102: 'FRMPD4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
FRMPD4 MUTATED 12 11 7 5
FRMPD4 WILD-TYPE 100 85 85 181

Figure S442.  Get High-res Image Gene #102: 'FRMPD4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'FRMPD4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00055 (Fisher's exact test), Q value = 0.016

Table S1142.  Gene #102: 'FRMPD4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
FRMPD4 MUTATED 7 3 7 5 8 1 4
FRMPD4 WILD-TYPE 53 47 42 35 55 124 95

Figure S443.  Get High-res Image Gene #102: 'FRMPD4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'FRMPD4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0773 (Fisher's exact test), Q value = 0.3

Table S1143.  Gene #102: 'FRMPD4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
FRMPD4 MUTATED 14 8 5 8
FRMPD4 WILD-TYPE 116 70 63 188
'FRMPD4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.148 (Fisher's exact test), Q value = 0.43

Table S1144.  Gene #102: 'FRMPD4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
FRMPD4 MUTATED 5 10 2 7 4 2 2 1 2
FRMPD4 WILD-TYPE 35 52 26 73 65 46 41 27 72
'FRMPD4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.413 (Fisher's exact test), Q value = 0.74

Table S1145.  Gene #102: 'FRMPD4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
FRMPD4 MUTATED 1 3 0 1
FRMPD4 WILD-TYPE 32 28 27 18
'FRMPD4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.819 (Fisher's exact test), Q value = 1

Table S1146.  Gene #102: 'FRMPD4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
FRMPD4 MUTATED 2 0 1 2
FRMPD4 WILD-TYPE 52 10 23 20
'SAPS2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00184 (Fisher's exact test), Q value = 0.036

Table S1147.  Gene #103: 'SAPS2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
SAPS2 MUTATED 11 0 2 0
SAPS2 WILD-TYPE 167 183 99 20

Figure S444.  Get High-res Image Gene #103: 'SAPS2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'SAPS2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0395 (Fisher's exact test), Q value = 0.21

Table S1148.  Gene #103: 'SAPS2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
SAPS2 MUTATED 4 0 7
SAPS2 WILD-TYPE 83 80 93

Figure S445.  Get High-res Image Gene #103: 'SAPS2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'SAPS2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.658 (Fisher's exact test), Q value = 0.94

Table S1149.  Gene #103: 'SAPS2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
SAPS2 MUTATED 2 3 5
SAPS2 WILD-TYPE 87 157 133
'SAPS2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.917 (Fisher's exact test), Q value = 1

Table S1150.  Gene #103: 'SAPS2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
SAPS2 MUTATED 5 4 1
SAPS2 WILD-TYPE 177 129 71
'SAPS2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00227 (Fisher's exact test), Q value = 0.041

Table S1151.  Gene #103: 'SAPS2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
SAPS2 MUTATED 0 7 4 2
SAPS2 WILD-TYPE 112 89 88 184

Figure S446.  Get High-res Image Gene #103: 'SAPS2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'SAPS2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S1152.  Gene #103: 'SAPS2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
SAPS2 MUTATED 0 0 8 2 0 0 3
SAPS2 WILD-TYPE 60 50 41 38 63 125 96

Figure S447.  Get High-res Image Gene #103: 'SAPS2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'SAPS2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.567 (Fisher's exact test), Q value = 0.87

Table S1153.  Gene #103: 'SAPS2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
SAPS2 MUTATED 6 2 1 4
SAPS2 WILD-TYPE 124 76 67 192
'SAPS2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00137 (Fisher's exact test), Q value = 0.03

Table S1154.  Gene #103: 'SAPS2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
SAPS2 MUTATED 1 2 1 0 8 0 1 0 0
SAPS2 WILD-TYPE 39 60 27 80 61 48 42 28 74

Figure S448.  Get High-res Image Gene #103: 'SAPS2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'SAPS2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0141 (Fisher's exact test), Q value = 0.12

Table S1155.  Gene #103: 'SAPS2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
SAPS2 MUTATED 1 0 1 4
SAPS2 WILD-TYPE 32 31 26 15

Figure S449.  Get High-res Image Gene #103: 'SAPS2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'SAPS2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0833 (Fisher's exact test), Q value = 0.31

Table S1156.  Gene #103: 'SAPS2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
SAPS2 MUTATED 2 0 4 0
SAPS2 WILD-TYPE 52 10 20 22
'MYST4 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00711 (Fisher's exact test), Q value = 0.078

Table S1157.  Gene #104: 'MYST4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
MYST4 MUTATED 4 0 1 5
MYST4 WILD-TYPE 42 58 63 38

Figure S450.  Get High-res Image Gene #104: 'MYST4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'MYST4 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00085 (Fisher's exact test), Q value = 0.022

Table S1158.  Gene #104: 'MYST4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
MYST4 MUTATED 7 0 3
MYST4 WILD-TYPE 44 83 74

Figure S451.  Get High-res Image Gene #104: 'MYST4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'MYST4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0117 (Fisher's exact test), Q value = 0.11

Table S1159.  Gene #104: 'MYST4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
MYST4 MUTATED 18 4 7 1
MYST4 WILD-TYPE 160 179 94 19

Figure S452.  Get High-res Image Gene #104: 'MYST4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'MYST4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.163 (Fisher's exact test), Q value = 0.46

Table S1160.  Gene #104: 'MYST4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
MYST4 MUTATED 10 3 7
MYST4 WILD-TYPE 77 77 93
'MYST4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.479 (Fisher's exact test), Q value = 0.81

Table S1161.  Gene #104: 'MYST4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
MYST4 MUTATED 4 10 12
MYST4 WILD-TYPE 85 150 126
'MYST4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.336 (Fisher's exact test), Q value = 0.66

Table S1162.  Gene #104: 'MYST4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
MYST4 MUTATED 13 6 7
MYST4 WILD-TYPE 169 127 65
'MYST4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.23 (Fisher's exact test), Q value = 0.55

Table S1163.  Gene #104: 'MYST4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
MYST4 MUTATED 4 10 6 10
MYST4 WILD-TYPE 108 86 86 176
'MYST4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00035 (Fisher's exact test), Q value = 0.012

Table S1164.  Gene #104: 'MYST4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
MYST4 MUTATED 4 5 9 0 3 1 8
MYST4 WILD-TYPE 56 45 40 40 60 124 91

Figure S453.  Get High-res Image Gene #104: 'MYST4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'MYST4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.984 (Fisher's exact test), Q value = 1

Table S1165.  Gene #104: 'MYST4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
MYST4 MUTATED 9 4 4 13
MYST4 WILD-TYPE 121 74 64 183
'MYST4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00731 (Fisher's exact test), Q value = 0.079

Table S1166.  Gene #104: 'MYST4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
MYST4 MUTATED 4 6 3 2 10 0 3 0 2
MYST4 WILD-TYPE 36 56 25 78 59 48 40 28 72

Figure S454.  Get High-res Image Gene #104: 'MYST4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'MYST4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00865 (Fisher's exact test), Q value = 0.087

Table S1167.  Gene #104: 'MYST4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
MYST4 MUTATED 0 0 3 3
MYST4 WILD-TYPE 33 31 24 16

Figure S455.  Get High-res Image Gene #104: 'MYST4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'MYST4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.365 (Fisher's exact test), Q value = 0.69

Table S1168.  Gene #104: 'MYST4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
MYST4 MUTATED 2 0 3 1
MYST4 WILD-TYPE 52 10 21 21
'PRPH2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0178 (Fisher's exact test), Q value = 0.13

Table S1169.  Gene #105: 'PRPH2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
PRPH2 MUTATED 3 0 0 0
PRPH2 WILD-TYPE 43 58 64 43

Figure S456.  Get High-res Image Gene #105: 'PRPH2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'PRPH2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0135 (Fisher's exact test), Q value = 0.11

Table S1170.  Gene #105: 'PRPH2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
PRPH2 MUTATED 3 0 0
PRPH2 WILD-TYPE 48 83 77

Figure S457.  Get High-res Image Gene #105: 'PRPH2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'PRPH2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.108 (Fisher's exact test), Q value = 0.36

Table S1171.  Gene #105: 'PRPH2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
PRPH2 MUTATED 5 2 6 0
PRPH2 WILD-TYPE 173 181 95 20
'PRPH2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.694 (Fisher's exact test), Q value = 0.97

Table S1172.  Gene #105: 'PRPH2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
PRPH2 MUTATED 2 4 3
PRPH2 WILD-TYPE 85 76 97
'PRPH2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.206 (Fisher's exact test), Q value = 0.51

Table S1173.  Gene #105: 'PRPH2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
PRPH2 MUTATED 0 5 5
PRPH2 WILD-TYPE 89 155 133
'PRPH2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1174.  Gene #105: 'PRPH2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
PRPH2 MUTATED 5 3 2
PRPH2 WILD-TYPE 177 130 70
'PRPH2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.92 (Fisher's exact test), Q value = 1

Table S1175.  Gene #105: 'PRPH2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
PRPH2 MUTATED 3 3 3 4
PRPH2 WILD-TYPE 109 93 89 182
'PRPH2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.138 (Fisher's exact test), Q value = 0.41

Table S1176.  Gene #105: 'PRPH2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
PRPH2 MUTATED 2 3 1 1 2 0 4
PRPH2 WILD-TYPE 58 47 48 39 61 125 95
'PRPH2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.428 (Fisher's exact test), Q value = 0.76

Table S1177.  Gene #105: 'PRPH2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
PRPH2 MUTATED 3 2 4 4
PRPH2 WILD-TYPE 127 76 64 192
'PRPH2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.425 (Fisher's exact test), Q value = 0.75

Table S1178.  Gene #105: 'PRPH2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
PRPH2 MUTATED 0 3 2 2 3 0 2 0 1
PRPH2 WILD-TYPE 40 59 26 78 66 48 41 28 73
'PRPH2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.168 (Fisher's exact test), Q value = 0.46

Table S1179.  Gene #105: 'PRPH2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
PRPH2 MUTATED 0 0 2 1
PRPH2 WILD-TYPE 33 31 25 18
'PRPH2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.451 (Fisher's exact test), Q value = 0.78

Table S1180.  Gene #105: 'PRPH2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
PRPH2 MUTATED 1 0 2 0
PRPH2 WILD-TYPE 53 10 22 22
'RBMX MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0807 (Fisher's exact test), Q value = 0.31

Table S1181.  Gene #106: 'RBMX MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
RBMX MUTATED 12 3 4 1
RBMX WILD-TYPE 166 180 97 19
'RBMX MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.124 (Fisher's exact test), Q value = 0.39

Table S1182.  Gene #106: 'RBMX MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
RBMX MUTATED 7 2 10
RBMX WILD-TYPE 80 78 90
'RBMX MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00489 (Fisher's exact test), Q value = 0.063

Table S1183.  Gene #106: 'RBMX MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
RBMX MUTATED 1 2 11
RBMX WILD-TYPE 88 158 127

Figure S458.  Get High-res Image Gene #106: 'RBMX MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'RBMX MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0401 (Fisher's exact test), Q value = 0.21

Table S1184.  Gene #106: 'RBMX MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
RBMX MUTATED 11 3 0
RBMX WILD-TYPE 171 130 72

Figure S459.  Get High-res Image Gene #106: 'RBMX MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'RBMX MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 7e-05 (Fisher's exact test), Q value = 0.0041

Table S1185.  Gene #106: 'RBMX MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
RBMX MUTATED 2 6 11 1
RBMX WILD-TYPE 110 90 81 185

Figure S460.  Get High-res Image Gene #106: 'RBMX MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'RBMX MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 2e-05 (Fisher's exact test), Q value = 0.0017

Table S1186.  Gene #106: 'RBMX MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
RBMX MUTATED 4 2 9 1 3 1 0
RBMX WILD-TYPE 56 48 40 39 60 124 99

Figure S461.  Get High-res Image Gene #106: 'RBMX MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'RBMX MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00906 (Fisher's exact test), Q value = 0.089

Table S1187.  Gene #106: 'RBMX MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
RBMX MUTATED 10 6 1 3
RBMX WILD-TYPE 120 72 67 193

Figure S462.  Get High-res Image Gene #106: 'RBMX MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'RBMX MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0321 (Fisher's exact test), Q value = 0.18

Table S1188.  Gene #106: 'RBMX MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
RBMX MUTATED 1 8 1 5 3 1 1 0 0
RBMX WILD-TYPE 39 54 27 75 66 47 42 28 74

Figure S463.  Get High-res Image Gene #106: 'RBMX MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'RBMX MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.593 (Fisher's exact test), Q value = 0.9

Table S1189.  Gene #106: 'RBMX MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
RBMX MUTATED 1 1 2 2
RBMX WILD-TYPE 32 30 25 17
'RBMX MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1190.  Gene #106: 'RBMX MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
RBMX MUTATED 4 0 1 1
RBMX WILD-TYPE 50 10 23 21
'LDHA MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0651 (Fisher's exact test), Q value = 0.28

Table S1191.  Gene #107: 'LDHA MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
LDHA MUTATED 1 0 0 2
LDHA WILD-TYPE 45 58 64 41
'LDHA MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.185 (Fisher's exact test), Q value = 0.49

Table S1192.  Gene #107: 'LDHA MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
LDHA MUTATED 2 0 1
LDHA WILD-TYPE 49 83 76
'LDHA MUTATION STATUS' versus 'CN_CNMF'

P value = 0.467 (Fisher's exact test), Q value = 0.79

Table S1193.  Gene #107: 'LDHA MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
LDHA MUTATED 6 3 3 1
LDHA WILD-TYPE 172 180 98 19
'LDHA MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.122 (Fisher's exact test), Q value = 0.39

Table S1194.  Gene #107: 'LDHA MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
LDHA MUTATED 1 6 4
LDHA WILD-TYPE 86 74 96
'LDHA MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0454 (Fisher's exact test), Q value = 0.23

Table S1195.  Gene #107: 'LDHA MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
LDHA MUTATED 2 1 7
LDHA WILD-TYPE 87 159 131

Figure S464.  Get High-res Image Gene #107: 'LDHA MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'LDHA MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00306 (Fisher's exact test), Q value = 0.049

Table S1196.  Gene #107: 'LDHA MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
LDHA MUTATED 10 0 0
LDHA WILD-TYPE 172 133 72

Figure S465.  Get High-res Image Gene #107: 'LDHA MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'LDHA MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.461 (Fisher's exact test), Q value = 0.79

Table S1197.  Gene #107: 'LDHA MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
LDHA MUTATED 3 2 5 4
LDHA WILD-TYPE 109 94 87 182
'LDHA MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.417 (Fisher's exact test), Q value = 0.74

Table S1198.  Gene #107: 'LDHA MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
LDHA MUTATED 3 1 3 1 2 1 3
LDHA WILD-TYPE 57 49 46 39 61 124 96
'LDHA MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00713 (Fisher's exact test), Q value = 0.078

Table S1199.  Gene #107: 'LDHA MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
LDHA MUTATED 9 2 0 2
LDHA WILD-TYPE 121 76 68 194

Figure S466.  Get High-res Image Gene #107: 'LDHA MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'LDHA MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0259 (Fisher's exact test), Q value = 0.16

Table S1200.  Gene #107: 'LDHA MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
LDHA MUTATED 1 3 4 1 2 1 0 1 0
LDHA WILD-TYPE 39 59 24 79 67 47 43 27 74

Figure S467.  Get High-res Image Gene #107: 'LDHA MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'LDHA MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0573 (Fisher's exact test), Q value = 0.26

Table S1201.  Gene #107: 'LDHA MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
LDHA MUTATED 0 1 1 3
LDHA WILD-TYPE 33 30 26 16
'LDHA MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.757 (Fisher's exact test), Q value = 1

Table S1202.  Gene #107: 'LDHA MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
LDHA MUTATED 4 0 1 0
LDHA WILD-TYPE 50 10 23 22
'GFI1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0177 (Fisher's exact test), Q value = 0.13

Table S1203.  Gene #108: 'GFI1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
GFI1 MUTATED 3 0 0 0
GFI1 WILD-TYPE 43 58 64 43

Figure S468.  Get High-res Image Gene #108: 'GFI1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'GFI1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0131 (Fisher's exact test), Q value = 0.11

Table S1204.  Gene #108: 'GFI1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
GFI1 MUTATED 3 0 0
GFI1 WILD-TYPE 48 83 77

Figure S469.  Get High-res Image Gene #108: 'GFI1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'GFI1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.657 (Fisher's exact test), Q value = 0.94

Table S1205.  Gene #108: 'GFI1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
GFI1 MUTATED 4 4 2 1
GFI1 WILD-TYPE 174 179 99 19
'GFI1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1206.  Gene #108: 'GFI1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
GFI1 MUTATED 3 2 3
GFI1 WILD-TYPE 84 78 97
'GFI1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.085 (Fisher's exact test), Q value = 0.32

Table S1207.  Gene #108: 'GFI1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
GFI1 MUTATED 2 1 6
GFI1 WILD-TYPE 87 159 132
'GFI1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.74 (Fisher's exact test), Q value = 1

Table S1208.  Gene #108: 'GFI1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
GFI1 MUTATED 5 2 2
GFI1 WILD-TYPE 177 131 70
'GFI1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.547 (Fisher's exact test), Q value = 0.87

Table S1209.  Gene #108: 'GFI1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
GFI1 MUTATED 2 2 4 3
GFI1 WILD-TYPE 110 94 88 183
'GFI1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0166 (Fisher's exact test), Q value = 0.13

Table S1210.  Gene #108: 'GFI1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
GFI1 MUTATED 1 3 1 3 0 0 3
GFI1 WILD-TYPE 59 47 48 37 63 125 96

Figure S470.  Get High-res Image Gene #108: 'GFI1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'GFI1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.728 (Fisher's exact test), Q value = 0.99

Table S1211.  Gene #108: 'GFI1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
GFI1 MUTATED 4 2 2 3
GFI1 WILD-TYPE 126 76 66 193
'GFI1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.152 (Fisher's exact test), Q value = 0.44

Table S1212.  Gene #108: 'GFI1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
GFI1 MUTATED 4 1 0 1 3 0 1 0 1
GFI1 WILD-TYPE 36 61 28 79 66 48 42 28 73
'SLC9A10 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0314 (Fisher's exact test), Q value = 0.18

Table S1213.  Gene #109: 'SLC9A10 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
SLC9A10 MUTATED 1 1 0 4
SLC9A10 WILD-TYPE 45 57 64 39

Figure S471.  Get High-res Image Gene #109: 'SLC9A10 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'SLC9A10 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.577 (Fisher's exact test), Q value = 0.88

Table S1214.  Gene #109: 'SLC9A10 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
SLC9A10 MUTATED 2 1 3
SLC9A10 WILD-TYPE 49 82 74
'SLC9A10 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0192 (Fisher's exact test), Q value = 0.14

Table S1215.  Gene #109: 'SLC9A10 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
SLC9A10 MUTATED 16 5 2 0
SLC9A10 WILD-TYPE 162 178 99 20

Figure S472.  Get High-res Image Gene #109: 'SLC9A10 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'SLC9A10 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.109 (Fisher's exact test), Q value = 0.37

Table S1216.  Gene #109: 'SLC9A10 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
SLC9A10 MUTATED 9 2 6
SLC9A10 WILD-TYPE 78 78 94
'SLC9A10 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0318 (Fisher's exact test), Q value = 0.18

Table S1217.  Gene #109: 'SLC9A10 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
SLC9A10 MUTATED 2 7 14
SLC9A10 WILD-TYPE 87 153 124

Figure S473.  Get High-res Image Gene #109: 'SLC9A10 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'SLC9A10 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.959 (Fisher's exact test), Q value = 1

Table S1218.  Gene #109: 'SLC9A10 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
SLC9A10 MUTATED 12 7 4
SLC9A10 WILD-TYPE 170 126 68
'SLC9A10 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.126 (Fisher's exact test), Q value = 0.4

Table S1219.  Gene #109: 'SLC9A10 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
SLC9A10 MUTATED 7 4 7 4
SLC9A10 WILD-TYPE 105 92 85 182
'SLC9A10 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0577 (Fisher's exact test), Q value = 0.26

Table S1220.  Gene #109: 'SLC9A10 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
SLC9A10 MUTATED 4 3 5 2 4 1 3
SLC9A10 WILD-TYPE 56 47 44 38 59 124 96
'SLC9A10 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.758 (Fisher's exact test), Q value = 1

Table S1221.  Gene #109: 'SLC9A10 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
SLC9A10 MUTATED 7 4 4 7
SLC9A10 WILD-TYPE 123 74 64 189
'SLC9A10 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.39 (Fisher's exact test), Q value = 0.72

Table S1222.  Gene #109: 'SLC9A10 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
SLC9A10 MUTATED 1 5 1 5 4 1 4 0 1
SLC9A10 WILD-TYPE 39 57 27 75 65 47 39 28 73
'SLC9A10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.134 (Fisher's exact test), Q value = 0.41

Table S1223.  Gene #109: 'SLC9A10 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
SLC9A10 MUTATED 2 0 4 1
SLC9A10 WILD-TYPE 31 31 23 18
'SLC9A10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.322 (Fisher's exact test), Q value = 0.65

Table S1224.  Gene #109: 'SLC9A10 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
SLC9A10 MUTATED 2 0 2 3
SLC9A10 WILD-TYPE 52 10 22 19
'OXSM MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0264 (Fisher's exact test), Q value = 0.16

Table S1225.  Gene #110: 'OXSM MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
OXSM MUTATED 3 0 0 2
OXSM WILD-TYPE 43 58 64 41

Figure S474.  Get High-res Image Gene #110: 'OXSM MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'OXSM MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00618 (Fisher's exact test), Q value = 0.072

Table S1226.  Gene #110: 'OXSM MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
OXSM MUTATED 4 0 1
OXSM WILD-TYPE 47 83 76

Figure S475.  Get High-res Image Gene #110: 'OXSM MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'OXSM MUTATION STATUS' versus 'CN_CNMF'

P value = 0.036 (Fisher's exact test), Q value = 0.2

Table S1227.  Gene #110: 'OXSM MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
OXSM MUTATED 9 1 3 1
OXSM WILD-TYPE 169 182 98 19

Figure S476.  Get High-res Image Gene #110: 'OXSM MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'OXSM MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.581 (Fisher's exact test), Q value = 0.89

Table S1228.  Gene #110: 'OXSM MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
OXSM MUTATED 2 2 5
OXSM WILD-TYPE 85 78 95
'OXSM MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0412 (Fisher's exact test), Q value = 0.21

Table S1229.  Gene #110: 'OXSM MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
OXSM MUTATED 0 4 8
OXSM WILD-TYPE 89 156 130

Figure S477.  Get High-res Image Gene #110: 'OXSM MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'OXSM MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.746 (Fisher's exact test), Q value = 1

Table S1230.  Gene #110: 'OXSM MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
OXSM MUTATED 6 5 1
OXSM WILD-TYPE 176 128 71
'OXSM MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.982 (Fisher's exact test), Q value = 1

Table S1231.  Gene #110: 'OXSM MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
OXSM MUTATED 3 3 3 5
OXSM WILD-TYPE 109 93 89 181
'OXSM MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0534 (Fisher's exact test), Q value = 0.25

Table S1232.  Gene #110: 'OXSM MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
OXSM MUTATED 2 1 2 0 3 0 6
OXSM WILD-TYPE 58 49 47 40 60 125 93
'OXSM MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.886 (Fisher's exact test), Q value = 1

Table S1233.  Gene #110: 'OXSM MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
OXSM MUTATED 4 1 2 5
OXSM WILD-TYPE 126 77 66 191
'OXSM MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0125 (Fisher's exact test), Q value = 0.11

Table S1234.  Gene #110: 'OXSM MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
OXSM MUTATED 1 2 3 0 4 0 2 0 0
OXSM WILD-TYPE 39 60 25 80 65 48 41 28 74

Figure S478.  Get High-res Image Gene #110: 'OXSM MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'OXSM MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0416 (Fisher's exact test), Q value = 0.22

Table S1235.  Gene #110: 'OXSM MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
OXSM MUTATED 0 0 3 1
OXSM WILD-TYPE 33 31 24 18

Figure S479.  Get High-res Image Gene #110: 'OXSM MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'OXSM MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.32 (Fisher's exact test), Q value = 0.65

Table S1236.  Gene #110: 'OXSM MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
OXSM MUTATED 1 0 1 2
OXSM WILD-TYPE 53 10 23 20
'NTAN1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.064 (Fisher's exact test), Q value = 0.27

Table S1237.  Gene #111: 'NTAN1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
NTAN1 MUTATED 1 0 0 2
NTAN1 WILD-TYPE 45 58 64 41
'NTAN1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0137 (Fisher's exact test), Q value = 0.12

Table S1238.  Gene #111: 'NTAN1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
NTAN1 MUTATED 3 0 0
NTAN1 WILD-TYPE 48 83 77

Figure S480.  Get High-res Image Gene #111: 'NTAN1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'NTAN1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00095 (Fisher's exact test), Q value = 0.024

Table S1239.  Gene #111: 'NTAN1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
NTAN1 MUTATED 10 0 0 0
NTAN1 WILD-TYPE 168 183 101 20

Figure S481.  Get High-res Image Gene #111: 'NTAN1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'NTAN1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0252 (Fisher's exact test), Q value = 0.16

Table S1240.  Gene #111: 'NTAN1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
NTAN1 MUTATED 1 0 6
NTAN1 WILD-TYPE 86 80 94

Figure S482.  Get High-res Image Gene #111: 'NTAN1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'NTAN1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.191 (Fisher's exact test), Q value = 0.49

Table S1241.  Gene #111: 'NTAN1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
NTAN1 MUTATED 1 2 6
NTAN1 WILD-TYPE 88 158 132
'NTAN1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.189 (Fisher's exact test), Q value = 0.49

Table S1242.  Gene #111: 'NTAN1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
NTAN1 MUTATED 7 1 1
NTAN1 WILD-TYPE 175 132 71
'NTAN1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0941 (Fisher's exact test), Q value = 0.34

Table S1243.  Gene #111: 'NTAN1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
NTAN1 MUTATED 0 4 3 3
NTAN1 WILD-TYPE 112 92 89 183
'NTAN1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 3e-05 (Fisher's exact test), Q value = 0.0022

Table S1244.  Gene #111: 'NTAN1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
NTAN1 MUTATED 0 0 7 0 0 0 3
NTAN1 WILD-TYPE 60 50 42 40 63 125 96

Figure S483.  Get High-res Image Gene #111: 'NTAN1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'NTAN1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0195 (Fisher's exact test), Q value = 0.14

Table S1245.  Gene #111: 'NTAN1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
NTAN1 MUTATED 7 0 0 2
NTAN1 WILD-TYPE 123 78 68 194

Figure S484.  Get High-res Image Gene #111: 'NTAN1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'NTAN1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0274 (Fisher's exact test), Q value = 0.17

Table S1246.  Gene #111: 'NTAN1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
NTAN1 MUTATED 1 1 0 0 5 0 2 0 0
NTAN1 WILD-TYPE 39 61 28 80 64 48 41 28 74

Figure S485.  Get High-res Image Gene #111: 'NTAN1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'ICAM5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0101 (Fisher's exact test), Q value = 0.096

Table S1247.  Gene #112: 'ICAM5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ICAM5 MUTATED 11 3 0 1
ICAM5 WILD-TYPE 167 180 101 19

Figure S486.  Get High-res Image Gene #112: 'ICAM5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ICAM5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0698 (Fisher's exact test), Q value = 0.28

Table S1248.  Gene #112: 'ICAM5 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ICAM5 MUTATED 2 2 9
ICAM5 WILD-TYPE 85 78 91
'ICAM5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.939 (Fisher's exact test), Q value = 1

Table S1249.  Gene #112: 'ICAM5 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ICAM5 MUTATED 3 5 6
ICAM5 WILD-TYPE 86 155 132
'ICAM5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.823 (Fisher's exact test), Q value = 1

Table S1250.  Gene #112: 'ICAM5 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ICAM5 MUTATED 6 6 2
ICAM5 WILD-TYPE 176 127 70
'ICAM5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.01 (Fisher's exact test), Q value = 0.096

Table S1251.  Gene #112: 'ICAM5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ICAM5 MUTATED 2 8 3 2
ICAM5 WILD-TYPE 110 88 89 184

Figure S487.  Get High-res Image Gene #112: 'ICAM5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'ICAM5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0192 (Fisher's exact test), Q value = 0.14

Table S1252.  Gene #112: 'ICAM5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ICAM5 MUTATED 2 0 5 3 2 1 2
ICAM5 WILD-TYPE 58 50 44 37 61 124 97

Figure S488.  Get High-res Image Gene #112: 'ICAM5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ICAM5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.56 (Fisher's exact test), Q value = 0.87

Table S1253.  Gene #112: 'ICAM5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ICAM5 MUTATED 6 1 1 7
ICAM5 WILD-TYPE 124 77 67 189
'ICAM5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0246 (Fisher's exact test), Q value = 0.16

Table S1254.  Gene #112: 'ICAM5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ICAM5 MUTATED 3 2 0 1 7 1 1 0 0
ICAM5 WILD-TYPE 37 60 28 79 62 47 42 28 74

Figure S489.  Get High-res Image Gene #112: 'ICAM5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'ICAM5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.631 (Fisher's exact test), Q value = 0.93

Table S1255.  Gene #112: 'ICAM5 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
ICAM5 MUTATED 0 1 1 1
ICAM5 WILD-TYPE 33 30 26 18
'ICAM5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.312 (Fisher's exact test), Q value = 0.64

Table S1256.  Gene #112: 'ICAM5 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
ICAM5 MUTATED 1 1 1 0
ICAM5 WILD-TYPE 53 9 23 22
'KCTD3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0017 (Fisher's exact test), Q value = 0.034

Table S1257.  Gene #113: 'KCTD3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
KCTD3 MUTATED 0 0 0 4
KCTD3 WILD-TYPE 46 58 64 39

Figure S490.  Get High-res Image Gene #113: 'KCTD3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'KCTD3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.833 (Fisher's exact test), Q value = 1

Table S1258.  Gene #113: 'KCTD3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
KCTD3 MUTATED 1 1 2
KCTD3 WILD-TYPE 50 82 75
'KCTD3 MUTATION STATUS' versus 'CN_CNMF'

P value = 5e-05 (Fisher's exact test), Q value = 0.0032

Table S1259.  Gene #113: 'KCTD3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
KCTD3 MUTATED 17 1 1 0
KCTD3 WILD-TYPE 161 182 100 20

Figure S491.  Get High-res Image Gene #113: 'KCTD3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'KCTD3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.143 (Fisher's exact test), Q value = 0.42

Table S1260.  Gene #113: 'KCTD3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
KCTD3 MUTATED 6 1 7
KCTD3 WILD-TYPE 81 79 93
'KCTD3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.253 (Fisher's exact test), Q value = 0.58

Table S1261.  Gene #113: 'KCTD3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
KCTD3 MUTATED 4 4 9
KCTD3 WILD-TYPE 85 156 129
'KCTD3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.369 (Fisher's exact test), Q value = 0.7

Table S1262.  Gene #113: 'KCTD3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
KCTD3 MUTATED 10 6 1
KCTD3 WILD-TYPE 172 127 71
'KCTD3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0388 (Fisher's exact test), Q value = 0.21

Table S1263.  Gene #113: 'KCTD3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
KCTD3 MUTATED 1 7 6 5
KCTD3 WILD-TYPE 111 89 86 181

Figure S492.  Get High-res Image Gene #113: 'KCTD3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'KCTD3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S1264.  Gene #113: 'KCTD3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
KCTD3 MUTATED 2 0 11 2 0 0 4
KCTD3 WILD-TYPE 58 50 38 38 63 125 95

Figure S493.  Get High-res Image Gene #113: 'KCTD3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'KCTD3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.397 (Fisher's exact test), Q value = 0.72

Table S1265.  Gene #113: 'KCTD3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
KCTD3 MUTATED 8 3 1 6
KCTD3 WILD-TYPE 122 75 67 190
'KCTD3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0316 (Fisher's exact test), Q value = 0.18

Table S1266.  Gene #113: 'KCTD3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
KCTD3 MUTATED 0 3 2 1 8 1 2 0 1
KCTD3 WILD-TYPE 40 59 26 79 61 47 41 28 73

Figure S494.  Get High-res Image Gene #113: 'KCTD3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'KCTD3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00055 (Fisher's exact test), Q value = 0.016

Table S1267.  Gene #113: 'KCTD3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
KCTD3 MUTATED 1 1 0 6
KCTD3 WILD-TYPE 32 30 27 13

Figure S495.  Get High-res Image Gene #113: 'KCTD3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'KCTD3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.436 (Fisher's exact test), Q value = 0.76

Table S1268.  Gene #113: 'KCTD3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
KCTD3 MUTATED 6 0 2 0
KCTD3 WILD-TYPE 48 10 22 22
'RBM44 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00401 (Fisher's exact test), Q value = 0.058

Table S1269.  Gene #114: 'RBM44 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
RBM44 MUTATED 3 0 0 4
RBM44 WILD-TYPE 43 58 64 39

Figure S496.  Get High-res Image Gene #114: 'RBM44 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'RBM44 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.55 (Fisher's exact test), Q value = 0.87

Table S1270.  Gene #114: 'RBM44 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
RBM44 MUTATED 3 2 2
RBM44 WILD-TYPE 48 81 75
'RBM44 MUTATION STATUS' versus 'CN_CNMF'

P value = 2e-05 (Fisher's exact test), Q value = 0.0017

Table S1271.  Gene #114: 'RBM44 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
RBM44 MUTATED 14 0 0 1
RBM44 WILD-TYPE 164 183 101 19

Figure S497.  Get High-res Image Gene #114: 'RBM44 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'RBM44 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0793 (Fisher's exact test), Q value = 0.3

Table S1272.  Gene #114: 'RBM44 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
RBM44 MUTATED 5 0 3
RBM44 WILD-TYPE 82 80 97
'RBM44 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.298 (Fisher's exact test), Q value = 0.63

Table S1273.  Gene #114: 'RBM44 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
RBM44 MUTATED 1 5 7
RBM44 WILD-TYPE 88 155 131
'RBM44 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1274.  Gene #114: 'RBM44 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
RBM44 MUTATED 6 5 2
RBM44 WILD-TYPE 176 128 70
'RBM44 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.103 (Fisher's exact test), Q value = 0.35

Table S1275.  Gene #114: 'RBM44 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
RBM44 MUTATED 0 4 3 8
RBM44 WILD-TYPE 112 92 89 178
'RBM44 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.036 (Fisher's exact test), Q value = 0.2

Table S1276.  Gene #114: 'RBM44 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
RBM44 MUTATED 1 1 4 0 1 1 7
RBM44 WILD-TYPE 59 49 45 40 62 124 92

Figure S498.  Get High-res Image Gene #114: 'RBM44 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'RBM44 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00558 (Fisher's exact test), Q value = 0.068

Table S1277.  Gene #114: 'RBM44 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
RBM44 MUTATED 0 4 0 10
RBM44 WILD-TYPE 130 74 68 186

Figure S499.  Get High-res Image Gene #114: 'RBM44 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'RBM44 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.161 (Fisher's exact test), Q value = 0.45

Table S1278.  Gene #114: 'RBM44 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
RBM44 MUTATED 1 3 2 1 5 0 0 1 1
RBM44 WILD-TYPE 39 59 26 79 64 48 43 27 73
'RBM44 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.254 (Fisher's exact test), Q value = 0.58

Table S1279.  Gene #114: 'RBM44 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
RBM44 MUTATED 2 0 0 1
RBM44 WILD-TYPE 31 31 27 18
'RBM44 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1280.  Gene #114: 'RBM44 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
RBM44 MUTATED 2 0 1 0
RBM44 WILD-TYPE 52 10 23 22
'KIAA1586 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0272 (Fisher's exact test), Q value = 0.17

Table S1281.  Gene #115: 'KIAA1586 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
KIAA1586 MUTATED 3 0 0 2
KIAA1586 WILD-TYPE 43 58 64 41

Figure S500.  Get High-res Image Gene #115: 'KIAA1586 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'KIAA1586 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.64 (Fisher's exact test), Q value = 0.93

Table S1282.  Gene #115: 'KIAA1586 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
KIAA1586 MUTATED 2 1 2
KIAA1586 WILD-TYPE 49 82 75
'KIAA1586 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.052 (Fisher's exact test), Q value = 0.25

Table S1283.  Gene #115: 'KIAA1586 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
KIAA1586 MUTATED 9 3 0 0
KIAA1586 WILD-TYPE 169 180 101 20
'KIAA1586 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.667 (Fisher's exact test), Q value = 0.95

Table S1284.  Gene #115: 'KIAA1586 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
KIAA1586 MUTATED 4 2 2
KIAA1586 WILD-TYPE 83 78 98
'KIAA1586 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1285.  Gene #115: 'KIAA1586 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
KIAA1586 MUTATED 2 5 4
KIAA1586 WILD-TYPE 87 155 134
'KIAA1586 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.195 (Fisher's exact test), Q value = 0.5

Table S1286.  Gene #115: 'KIAA1586 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
KIAA1586 MUTATED 5 6 0
KIAA1586 WILD-TYPE 177 127 72
'KIAA1586 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.177 (Fisher's exact test), Q value = 0.48

Table S1287.  Gene #115: 'KIAA1586 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
KIAA1586 MUTATED 1 1 5 6
KIAA1586 WILD-TYPE 111 95 87 180
'KIAA1586 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.31 (Fisher's exact test), Q value = 0.64

Table S1288.  Gene #115: 'KIAA1586 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
KIAA1586 MUTATED 1 2 3 0 2 1 4
KIAA1586 WILD-TYPE 59 48 46 40 61 124 95
'KIAA1586 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.2 (Fisher's exact test), Q value = 0.5

Table S1289.  Gene #115: 'KIAA1586 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
KIAA1586 MUTATED 1 4 1 7
KIAA1586 WILD-TYPE 129 74 67 189
'KIAA1586 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.289 (Fisher's exact test), Q value = 0.62

Table S1290.  Gene #115: 'KIAA1586 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
KIAA1586 MUTATED 0 3 0 1 5 0 1 0 3
KIAA1586 WILD-TYPE 40 59 28 79 64 48 42 28 71
'KIAA1586 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.357 (Fisher's exact test), Q value = 0.69

Table S1291.  Gene #115: 'KIAA1586 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
KIAA1586 MUTATED 1 1 0 2
KIAA1586 WILD-TYPE 32 30 27 17
'KIAA1586 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.766 (Fisher's exact test), Q value = 1

Table S1292.  Gene #115: 'KIAA1586 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
KIAA1586 MUTATED 3 0 0 1
KIAA1586 WILD-TYPE 51 10 24 21
'CDX2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0225 (Fisher's exact test), Q value = 0.15

Table S1293.  Gene #116: 'CDX2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
CDX2 MUTATED 6 0 0 0
CDX2 WILD-TYPE 172 183 101 20

Figure S501.  Get High-res Image Gene #116: 'CDX2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'CDX2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.197 (Fisher's exact test), Q value = 0.5

Table S1294.  Gene #116: 'CDX2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
CDX2 MUTATED 1 0 4
CDX2 WILD-TYPE 86 80 96
'CDX2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1295.  Gene #116: 'CDX2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
CDX2 MUTATED 1 3 2
CDX2 WILD-TYPE 88 157 136
'CDX2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.497 (Fisher's exact test), Q value = 0.82

Table S1296.  Gene #116: 'CDX2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
CDX2 MUTATED 2 2 2
CDX2 WILD-TYPE 180 131 70
'CDX2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0354 (Fisher's exact test), Q value = 0.19

Table S1297.  Gene #116: 'CDX2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
CDX2 MUTATED 0 4 1 1
CDX2 WILD-TYPE 112 92 91 185

Figure S502.  Get High-res Image Gene #116: 'CDX2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'CDX2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00211 (Fisher's exact test), Q value = 0.039

Table S1298.  Gene #116: 'CDX2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
CDX2 MUTATED 0 0 4 1 0 0 1
CDX2 WILD-TYPE 60 50 45 39 63 125 98

Figure S503.  Get High-res Image Gene #116: 'CDX2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CDX2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.259 (Fisher's exact test), Q value = 0.58

Table S1299.  Gene #116: 'CDX2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
CDX2 MUTATED 4 0 0 2
CDX2 WILD-TYPE 126 78 68 194
'CDX2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.274 (Fisher's exact test), Q value = 0.6

Table S1300.  Gene #116: 'CDX2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
CDX2 MUTATED 1 1 0 0 3 0 1 0 0
CDX2 WILD-TYPE 39 61 28 80 66 48 42 28 74
'EXD2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.029 (Fisher's exact test), Q value = 0.17

Table S1301.  Gene #117: 'EXD2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
EXD2 MUTATED 9 1 2 1
EXD2 WILD-TYPE 169 182 99 19

Figure S504.  Get High-res Image Gene #117: 'EXD2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'EXD2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.195 (Fisher's exact test), Q value = 0.5

Table S1302.  Gene #117: 'EXD2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
EXD2 MUTATED 6 1 4
EXD2 WILD-TYPE 81 79 96
'EXD2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.162 (Fisher's exact test), Q value = 0.45

Table S1303.  Gene #117: 'EXD2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
EXD2 MUTATED 3 2 7
EXD2 WILD-TYPE 86 158 131
'EXD2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.16 (Fisher's exact test), Q value = 0.45

Table S1304.  Gene #117: 'EXD2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
EXD2 MUTATED 9 2 1
EXD2 WILD-TYPE 173 131 71
'EXD2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.112 (Fisher's exact test), Q value = 0.37

Table S1305.  Gene #117: 'EXD2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
EXD2 MUTATED 2 4 5 2
EXD2 WILD-TYPE 110 92 87 184
'EXD2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0558 (Fisher's exact test), Q value = 0.26

Table S1306.  Gene #117: 'EXD2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
EXD2 MUTATED 1 2 2 2 4 0 2
EXD2 WILD-TYPE 59 48 47 38 59 125 97
'EXD2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0709 (Fisher's exact test), Q value = 0.29

Table S1307.  Gene #117: 'EXD2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
EXD2 MUTATED 4 5 1 2
EXD2 WILD-TYPE 126 73 67 194
'EXD2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.288 (Fisher's exact test), Q value = 0.62

Table S1308.  Gene #117: 'EXD2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
EXD2 MUTATED 2 4 1 2 2 0 1 0 0
EXD2 WILD-TYPE 38 58 27 78 67 48 42 28 74
'EXD2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.931 (Fisher's exact test), Q value = 1

Table S1309.  Gene #117: 'EXD2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
EXD2 MUTATED 1 2 1 1
EXD2 WILD-TYPE 32 29 26 18
'EXD2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.382 (Fisher's exact test), Q value = 0.71

Table S1310.  Gene #117: 'EXD2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
EXD2 MUTATED 2 1 2 0
EXD2 WILD-TYPE 52 9 22 22
'CLEC4F MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.157 (Fisher's exact test), Q value = 0.45

Table S1311.  Gene #118: 'CLEC4F MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
CLEC4F MUTATED 0 1 0 2
CLEC4F WILD-TYPE 46 57 64 41
'CLEC4F MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.182 (Fisher's exact test), Q value = 0.48

Table S1312.  Gene #118: 'CLEC4F MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
CLEC4F MUTATED 2 0 1
CLEC4F WILD-TYPE 49 83 76
'CLEC4F MUTATION STATUS' versus 'CN_CNMF'

P value = 3e-04 (Fisher's exact test), Q value = 0.011

Table S1313.  Gene #118: 'CLEC4F MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
CLEC4F MUTATED 17 3 0 0
CLEC4F WILD-TYPE 161 180 101 20

Figure S505.  Get High-res Image Gene #118: 'CLEC4F MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'CLEC4F MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.11 (Fisher's exact test), Q value = 0.37

Table S1314.  Gene #118: 'CLEC4F MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
CLEC4F MUTATED 9 2 6
CLEC4F WILD-TYPE 78 78 94
'CLEC4F MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.25 (Fisher's exact test), Q value = 0.58

Table S1315.  Gene #118: 'CLEC4F MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
CLEC4F MUTATED 4 5 10
CLEC4F WILD-TYPE 85 155 128
'CLEC4F MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.581 (Fisher's exact test), Q value = 0.89

Table S1316.  Gene #118: 'CLEC4F MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
CLEC4F MUTATED 11 6 2
CLEC4F WILD-TYPE 171 127 70
'CLEC4F MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0769 (Fisher's exact test), Q value = 0.3

Table S1317.  Gene #118: 'CLEC4F MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
CLEC4F MUTATED 3 8 5 4
CLEC4F WILD-TYPE 109 88 87 182
'CLEC4F MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.051 (Fisher's exact test), Q value = 0.24

Table S1318.  Gene #118: 'CLEC4F MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
CLEC4F MUTATED 2 4 6 1 1 2 4
CLEC4F WILD-TYPE 58 46 43 39 62 123 95
'CLEC4F MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.679 (Fisher's exact test), Q value = 0.96

Table S1319.  Gene #118: 'CLEC4F MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
CLEC4F MUTATED 7 3 1 8
CLEC4F WILD-TYPE 123 75 67 188
'CLEC4F MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.289 (Fisher's exact test), Q value = 0.62

Table S1320.  Gene #118: 'CLEC4F MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
CLEC4F MUTATED 4 3 0 3 5 0 2 0 2
CLEC4F WILD-TYPE 36 59 28 77 64 48 41 28 72
'CLEC4F MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0246 (Fisher's exact test), Q value = 0.16

Table S1321.  Gene #118: 'CLEC4F MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
CLEC4F MUTATED 1 0 0 3
CLEC4F WILD-TYPE 32 31 27 16

Figure S506.  Get High-res Image Gene #118: 'CLEC4F MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'CLEC4F MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.871 (Fisher's exact test), Q value = 1

Table S1322.  Gene #118: 'CLEC4F MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
CLEC4F MUTATED 3 0 1 0
CLEC4F WILD-TYPE 51 10 23 22
'GPR174 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.271 (Fisher's exact test), Q value = 0.6

Table S1323.  Gene #119: 'GPR174 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
GPR174 MUTATED 2 0 1 0
GPR174 WILD-TYPE 44 58 63 43
'GPR174 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.253 (Fisher's exact test), Q value = 0.58

Table S1324.  Gene #119: 'GPR174 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
GPR174 MUTATED 2 1 0
GPR174 WILD-TYPE 49 82 77
'GPR174 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.268 (Fisher's exact test), Q value = 0.59

Table S1325.  Gene #119: 'GPR174 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
GPR174 MUTATED 2 6 1 1
GPR174 WILD-TYPE 176 177 100 19
'GPR174 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.714 (Fisher's exact test), Q value = 0.98

Table S1326.  Gene #119: 'GPR174 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
GPR174 MUTATED 3 1 3
GPR174 WILD-TYPE 84 79 97
'GPR174 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.463 (Fisher's exact test), Q value = 0.79

Table S1327.  Gene #119: 'GPR174 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
GPR174 MUTATED 3 2 4
GPR174 WILD-TYPE 86 158 134
'GPR174 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.239 (Fisher's exact test), Q value = 0.56

Table S1328.  Gene #119: 'GPR174 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
GPR174 MUTATED 5 1 3
GPR174 WILD-TYPE 177 132 69
'GPR174 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.342 (Fisher's exact test), Q value = 0.67

Table S1329.  Gene #119: 'GPR174 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
GPR174 MUTATED 2 2 4 2
GPR174 WILD-TYPE 110 94 88 184
'GPR174 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.225 (Fisher's exact test), Q value = 0.54

Table S1330.  Gene #119: 'GPR174 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
GPR174 MUTATED 1 0 1 3 2 1 2
GPR174 WILD-TYPE 59 50 48 37 61 124 97
'GPR174 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.761 (Fisher's exact test), Q value = 1

Table S1331.  Gene #119: 'GPR174 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
GPR174 MUTATED 4 2 1 3
GPR174 WILD-TYPE 126 76 67 193
'GPR174 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.737 (Fisher's exact test), Q value = 1

Table S1332.  Gene #119: 'GPR174 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
GPR174 MUTATED 1 2 1 1 1 0 2 1 1
GPR174 WILD-TYPE 39 60 27 79 68 48 41 27 73
'GPR174 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.256 (Fisher's exact test), Q value = 0.58

Table S1333.  Gene #119: 'GPR174 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
GPR174 MUTATED 2 0 0 1
GPR174 WILD-TYPE 31 31 27 18
'GPR174 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.564 (Fisher's exact test), Q value = 0.87

Table S1334.  Gene #119: 'GPR174 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
GPR174 MUTATED 3 0 0 0
GPR174 WILD-TYPE 51 10 24 22
'NAA25 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00381 (Fisher's exact test), Q value = 0.056

Table S1335.  Gene #120: 'NAA25 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
NAA25 MUTATED 5 0 1 5
NAA25 WILD-TYPE 41 58 63 38

Figure S507.  Get High-res Image Gene #120: 'NAA25 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'NAA25 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0101 (Fisher's exact test), Q value = 0.096

Table S1336.  Gene #120: 'NAA25 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
NAA25 MUTATED 7 3 1
NAA25 WILD-TYPE 44 80 76

Figure S508.  Get High-res Image Gene #120: 'NAA25 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'NAA25 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00585 (Fisher's exact test), Q value = 0.069

Table S1337.  Gene #120: 'NAA25 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
NAA25 MUTATED 14 2 2 0
NAA25 WILD-TYPE 164 181 99 20

Figure S509.  Get High-res Image Gene #120: 'NAA25 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'NAA25 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.499 (Fisher's exact test), Q value = 0.83

Table S1338.  Gene #120: 'NAA25 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
NAA25 MUTATED 4 1 3
NAA25 WILD-TYPE 83 79 97
'NAA25 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.434 (Fisher's exact test), Q value = 0.76

Table S1339.  Gene #120: 'NAA25 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
NAA25 MUTATED 2 6 8
NAA25 WILD-TYPE 87 154 130
'NAA25 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.42 (Fisher's exact test), Q value = 0.75

Table S1340.  Gene #120: 'NAA25 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
NAA25 MUTATED 7 4 5
NAA25 WILD-TYPE 175 129 67
'NAA25 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.288 (Fisher's exact test), Q value = 0.62

Table S1341.  Gene #120: 'NAA25 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
NAA25 MUTATED 2 3 2 11
NAA25 WILD-TYPE 110 93 90 175
'NAA25 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.157 (Fisher's exact test), Q value = 0.45

Table S1342.  Gene #120: 'NAA25 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
NAA25 MUTATED 4 1 1 1 1 2 8
NAA25 WILD-TYPE 56 49 48 39 62 123 91
'NAA25 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.4 (Fisher's exact test), Q value = 0.73

Table S1343.  Gene #120: 'NAA25 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
NAA25 MUTATED 3 1 3 10
NAA25 WILD-TYPE 127 77 65 186
'NAA25 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.108 (Fisher's exact test), Q value = 0.36

Table S1344.  Gene #120: 'NAA25 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
NAA25 MUTATED 0 1 2 4 7 1 1 0 1
NAA25 WILD-TYPE 40 61 26 76 62 47 42 28 73
'NAA25 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.909 (Fisher's exact test), Q value = 1

Table S1345.  Gene #120: 'NAA25 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
NAA25 MUTATED 2 1 1 0
NAA25 WILD-TYPE 31 30 26 19
'NAA25 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.177 (Fisher's exact test), Q value = 0.48

Table S1346.  Gene #120: 'NAA25 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
NAA25 MUTATED 1 1 2 0
NAA25 WILD-TYPE 53 9 22 22
'FIGNL1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00382 (Fisher's exact test), Q value = 0.056

Table S1347.  Gene #121: 'FIGNL1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
FIGNL1 MUTATED 1 0 0 4
FIGNL1 WILD-TYPE 45 58 64 39

Figure S510.  Get High-res Image Gene #121: 'FIGNL1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'FIGNL1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.739 (Fisher's exact test), Q value = 1

Table S1348.  Gene #121: 'FIGNL1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
FIGNL1 MUTATED 2 2 1
FIGNL1 WILD-TYPE 49 81 76
'FIGNL1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0653 (Fisher's exact test), Q value = 0.28

Table S1349.  Gene #121: 'FIGNL1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
FIGNL1 MUTATED 13 4 2 0
FIGNL1 WILD-TYPE 165 179 99 20
'FIGNL1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.701 (Fisher's exact test), Q value = 0.97

Table S1350.  Gene #121: 'FIGNL1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
FIGNL1 MUTATED 6 3 5
FIGNL1 WILD-TYPE 81 77 95
'FIGNL1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.61 (Fisher's exact test), Q value = 0.91

Table S1351.  Gene #121: 'FIGNL1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
FIGNL1 MUTATED 2 5 7
FIGNL1 WILD-TYPE 87 155 131
'FIGNL1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.636 (Fisher's exact test), Q value = 0.93

Table S1352.  Gene #121: 'FIGNL1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
FIGNL1 MUTATED 8 5 1
FIGNL1 WILD-TYPE 174 128 71
'FIGNL1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.556 (Fisher's exact test), Q value = 0.87

Table S1353.  Gene #121: 'FIGNL1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
FIGNL1 MUTATED 3 6 4 6
FIGNL1 WILD-TYPE 109 90 88 180
'FIGNL1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0247 (Fisher's exact test), Q value = 0.16

Table S1354.  Gene #121: 'FIGNL1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
FIGNL1 MUTATED 0 3 4 1 5 1 5
FIGNL1 WILD-TYPE 60 47 45 39 58 124 94

Figure S511.  Get High-res Image Gene #121: 'FIGNL1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'FIGNL1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.73 (Fisher's exact test), Q value = 1

Table S1355.  Gene #121: 'FIGNL1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
FIGNL1 MUTATED 5 5 2 7
FIGNL1 WILD-TYPE 125 73 66 189
'FIGNL1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0124 (Fisher's exact test), Q value = 0.11

Table S1356.  Gene #121: 'FIGNL1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
FIGNL1 MUTATED 1 5 5 1 4 0 1 0 2
FIGNL1 WILD-TYPE 39 57 23 79 65 48 42 28 72

Figure S512.  Get High-res Image Gene #121: 'FIGNL1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'HMG20A MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.771 (Fisher's exact test), Q value = 1

Table S1357.  Gene #122: 'HMG20A MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
HMG20A MUTATED 1 2 1 2
HMG20A WILD-TYPE 45 56 63 41
'HMG20A MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.511 (Fisher's exact test), Q value = 0.83

Table S1358.  Gene #122: 'HMG20A MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
HMG20A MUTATED 1 4 1
HMG20A WILD-TYPE 50 79 76
'HMG20A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.459 (Fisher's exact test), Q value = 0.79

Table S1359.  Gene #122: 'HMG20A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
HMG20A MUTATED 8 6 1 0
HMG20A WILD-TYPE 170 177 100 20
'HMG20A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0942 (Fisher's exact test), Q value = 0.34

Table S1360.  Gene #122: 'HMG20A MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
HMG20A MUTATED 5 0 4
HMG20A WILD-TYPE 82 80 96
'HMG20A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.94 (Fisher's exact test), Q value = 1

Table S1361.  Gene #122: 'HMG20A MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
HMG20A MUTATED 3 5 6
HMG20A WILD-TYPE 86 155 132
'HMG20A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.879 (Fisher's exact test), Q value = 1

Table S1362.  Gene #122: 'HMG20A MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
HMG20A MUTATED 7 4 3
HMG20A WILD-TYPE 175 129 69
'HMG20A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.281 (Fisher's exact test), Q value = 0.61

Table S1363.  Gene #122: 'HMG20A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
HMG20A MUTATED 1 5 2 7
HMG20A WILD-TYPE 111 91 90 179
'HMG20A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.893 (Fisher's exact test), Q value = 1

Table S1364.  Gene #122: 'HMG20A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
HMG20A MUTATED 1 3 2 1 1 4 3
HMG20A WILD-TYPE 59 47 47 39 62 121 96
'HMG20A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.98 (Fisher's exact test), Q value = 1

Table S1365.  Gene #122: 'HMG20A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
HMG20A MUTATED 4 3 2 6
HMG20A WILD-TYPE 126 75 66 190
'HMG20A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.791 (Fisher's exact test), Q value = 1

Table S1366.  Gene #122: 'HMG20A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
HMG20A MUTATED 2 2 2 3 2 0 1 0 3
HMG20A WILD-TYPE 38 60 26 77 67 48 42 28 71
'HMG20A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.255 (Fisher's exact test), Q value = 0.58

Table S1367.  Gene #122: 'HMG20A MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
HMG20A MUTATED 2 0 0 1
HMG20A WILD-TYPE 31 31 27 18
'HMG20A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.842 (Fisher's exact test), Q value = 1

Table S1368.  Gene #122: 'HMG20A MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
HMG20A MUTATED 2 0 0 1
HMG20A WILD-TYPE 52 10 24 21
'SHROOM4 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00564 (Fisher's exact test), Q value = 0.068

Table S1369.  Gene #123: 'SHROOM4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
SHROOM4 MUTATED 4 0 0 1
SHROOM4 WILD-TYPE 42 58 64 42

Figure S513.  Get High-res Image Gene #123: 'SHROOM4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'SHROOM4 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0181 (Fisher's exact test), Q value = 0.13

Table S1370.  Gene #123: 'SHROOM4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
SHROOM4 MUTATED 4 1 0
SHROOM4 WILD-TYPE 47 82 77

Figure S514.  Get High-res Image Gene #123: 'SHROOM4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'SHROOM4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00382 (Fisher's exact test), Q value = 0.056

Table S1371.  Gene #123: 'SHROOM4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
SHROOM4 MUTATED 18 5 2 2
SHROOM4 WILD-TYPE 160 178 99 18

Figure S515.  Get High-res Image Gene #123: 'SHROOM4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'SHROOM4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.616 (Fisher's exact test), Q value = 0.91

Table S1372.  Gene #123: 'SHROOM4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
SHROOM4 MUTATED 5 8 9
SHROOM4 WILD-TYPE 82 72 91
'SHROOM4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.139 (Fisher's exact test), Q value = 0.42

Table S1373.  Gene #123: 'SHROOM4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
SHROOM4 MUTATED 2 10 12
SHROOM4 WILD-TYPE 87 150 126
'SHROOM4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.43 (Fisher's exact test), Q value = 0.76

Table S1374.  Gene #123: 'SHROOM4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
SHROOM4 MUTATED 12 10 2
SHROOM4 WILD-TYPE 170 123 70
'SHROOM4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0882 (Fisher's exact test), Q value = 0.32

Table S1375.  Gene #123: 'SHROOM4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
SHROOM4 MUTATED 10 7 6 5
SHROOM4 WILD-TYPE 102 89 86 181
'SHROOM4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00037 (Fisher's exact test), Q value = 0.013

Table S1376.  Gene #123: 'SHROOM4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
SHROOM4 MUTATED 8 1 8 3 3 1 4
SHROOM4 WILD-TYPE 52 49 41 37 60 124 95

Figure S516.  Get High-res Image Gene #123: 'SHROOM4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'SHROOM4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00327 (Fisher's exact test), Q value = 0.051

Table S1377.  Gene #123: 'SHROOM4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
SHROOM4 MUTATED 16 3 3 5
SHROOM4 WILD-TYPE 114 75 65 191

Figure S517.  Get High-res Image Gene #123: 'SHROOM4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'SHROOM4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0205 (Fisher's exact test), Q value = 0.14

Table S1378.  Gene #123: 'SHROOM4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
SHROOM4 MUTATED 3 3 1 4 10 4 2 0 0
SHROOM4 WILD-TYPE 37 59 27 76 59 44 41 28 74

Figure S518.  Get High-res Image Gene #123: 'SHROOM4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'SHROOM4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.763 (Fisher's exact test), Q value = 1

Table S1379.  Gene #123: 'SHROOM4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
SHROOM4 MUTATED 3 1 2 2
SHROOM4 WILD-TYPE 30 30 25 17
'SHROOM4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.4 (Fisher's exact test), Q value = 0.73

Table S1380.  Gene #123: 'SHROOM4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
SHROOM4 MUTATED 2 1 3 2
SHROOM4 WILD-TYPE 52 9 21 20
'CASP8 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00054 (Fisher's exact test), Q value = 0.016

Table S1381.  Gene #124: 'CASP8 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
CASP8 MUTATED 6 0 0 3
CASP8 WILD-TYPE 40 58 64 40

Figure S519.  Get High-res Image Gene #124: 'CASP8 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'CASP8 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S1382.  Gene #124: 'CASP8 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
CASP8 MUTATED 9 0 0
CASP8 WILD-TYPE 42 83 77

Figure S520.  Get High-res Image Gene #124: 'CASP8 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'CASP8 MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S1383.  Gene #124: 'CASP8 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
CASP8 MUTATED 17 1 0 0
CASP8 WILD-TYPE 161 182 101 20

Figure S521.  Get High-res Image Gene #124: 'CASP8 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'CASP8 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.114 (Fisher's exact test), Q value = 0.37

Table S1384.  Gene #124: 'CASP8 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
CASP8 MUTATED 3 0 5
CASP8 WILD-TYPE 84 80 95
'CASP8 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.137 (Fisher's exact test), Q value = 0.41

Table S1385.  Gene #124: 'CASP8 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
CASP8 MUTATED 6 3 6
CASP8 WILD-TYPE 83 157 132
'CASP8 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0977 (Fisher's exact test), Q value = 0.34

Table S1386.  Gene #124: 'CASP8 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
CASP8 MUTATED 6 3 6
CASP8 WILD-TYPE 176 130 66
'CASP8 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.221 (Fisher's exact test), Q value = 0.54

Table S1387.  Gene #124: 'CASP8 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
CASP8 MUTATED 1 3 4 10
CASP8 WILD-TYPE 111 93 88 176
'CASP8 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 4e-05 (Fisher's exact test), Q value = 0.0027

Table S1388.  Gene #124: 'CASP8 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
CASP8 MUTATED 0 1 4 0 2 0 11
CASP8 WILD-TYPE 60 49 45 40 61 125 88

Figure S522.  Get High-res Image Gene #124: 'CASP8 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CASP8 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0744 (Fisher's exact test), Q value = 0.29

Table S1389.  Gene #124: 'CASP8 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
CASP8 MUTATED 2 3 0 11
CASP8 WILD-TYPE 128 75 68 185
'CASP8 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00029 (Fisher's exact test), Q value = 0.011

Table S1390.  Gene #124: 'CASP8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
CASP8 MUTATED 2 2 1 1 10 0 0 0 0
CASP8 WILD-TYPE 38 60 27 79 59 48 43 28 74

Figure S523.  Get High-res Image Gene #124: 'CASP8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'CASP8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.627 (Fisher's exact test), Q value = 0.92

Table S1391.  Gene #124: 'CASP8 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
CASP8 MUTATED 0 1 1 1
CASP8 WILD-TYPE 33 30 26 18
'CASP8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.448 (Fisher's exact test), Q value = 0.77

Table S1392.  Gene #124: 'CASP8 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
CASP8 MUTATED 1 0 2 0
CASP8 WILD-TYPE 53 10 22 22
'HPS3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00573 (Fisher's exact test), Q value = 0.069

Table S1393.  Gene #125: 'HPS3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
HPS3 MUTATED 2 0 0 4
HPS3 WILD-TYPE 44 58 64 39

Figure S524.  Get High-res Image Gene #125: 'HPS3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'HPS3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0151 (Fisher's exact test), Q value = 0.12

Table S1394.  Gene #125: 'HPS3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
HPS3 MUTATED 4 0 2
HPS3 WILD-TYPE 47 83 75

Figure S525.  Get High-res Image Gene #125: 'HPS3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'HPS3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0182 (Fisher's exact test), Q value = 0.13

Table S1395.  Gene #125: 'HPS3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
HPS3 MUTATED 16 4 3 0
HPS3 WILD-TYPE 162 179 98 20

Figure S526.  Get High-res Image Gene #125: 'HPS3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'HPS3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.285 (Fisher's exact test), Q value = 0.61

Table S1396.  Gene #125: 'HPS3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
HPS3 MUTATED 3 5 9
HPS3 WILD-TYPE 84 75 91
'HPS3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.212 (Fisher's exact test), Q value = 0.52

Table S1397.  Gene #125: 'HPS3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
HPS3 MUTATED 2 6 10
HPS3 WILD-TYPE 87 154 128
'HPS3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.772 (Fisher's exact test), Q value = 1

Table S1398.  Gene #125: 'HPS3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
HPS3 MUTATED 9 7 2
HPS3 WILD-TYPE 173 126 70
'HPS3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.509 (Fisher's exact test), Q value = 0.83

Table S1399.  Gene #125: 'HPS3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
HPS3 MUTATED 6 7 3 7
HPS3 WILD-TYPE 106 89 89 179
'HPS3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0049 (Fisher's exact test), Q value = 0.063

Table S1400.  Gene #125: 'HPS3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
HPS3 MUTATED 3 4 3 5 2 0 6
HPS3 WILD-TYPE 57 46 46 35 61 125 93

Figure S527.  Get High-res Image Gene #125: 'HPS3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'HPS3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0853 (Fisher's exact test), Q value = 0.32

Table S1401.  Gene #125: 'HPS3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
HPS3 MUTATED 11 1 2 7
HPS3 WILD-TYPE 119 77 66 189
'HPS3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0429 (Fisher's exact test), Q value = 0.22

Table S1402.  Gene #125: 'HPS3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
HPS3 MUTATED 3 1 4 5 5 0 0 0 3
HPS3 WILD-TYPE 37 61 24 75 64 48 43 28 71

Figure S528.  Get High-res Image Gene #125: 'HPS3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'HPS3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0596 (Fisher's exact test), Q value = 0.27

Table S1403.  Gene #125: 'HPS3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
HPS3 MUTATED 0 0 1 2
HPS3 WILD-TYPE 33 31 26 17
'HPS3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.449 (Fisher's exact test), Q value = 0.77

Table S1404.  Gene #125: 'HPS3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
HPS3 MUTATED 1 0 2 0
HPS3 WILD-TYPE 53 10 22 22
'GLI1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.051 (Fisher's exact test), Q value = 0.24

Table S1405.  Gene #126: 'GLI1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
GLI1 MUTATED 0 0 1 3
GLI1 WILD-TYPE 46 58 63 40
'GLI1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.231 (Fisher's exact test), Q value = 0.55

Table S1406.  Gene #126: 'GLI1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
GLI1 MUTATED 2 2 0
GLI1 WILD-TYPE 49 81 77
'GLI1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00777 (Fisher's exact test), Q value = 0.082

Table S1407.  Gene #126: 'GLI1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
GLI1 MUTATED 15 3 2 1
GLI1 WILD-TYPE 163 180 99 19

Figure S529.  Get High-res Image Gene #126: 'GLI1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'GLI1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.204 (Fisher's exact test), Q value = 0.51

Table S1408.  Gene #126: 'GLI1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
GLI1 MUTATED 6 2 9
GLI1 WILD-TYPE 81 78 91
'GLI1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0308 (Fisher's exact test), Q value = 0.18

Table S1409.  Gene #126: 'GLI1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
GLI1 MUTATED 2 4 12
GLI1 WILD-TYPE 87 156 126

Figure S530.  Get High-res Image Gene #126: 'GLI1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'GLI1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.534 (Fisher's exact test), Q value = 0.85

Table S1410.  Gene #126: 'GLI1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
GLI1 MUTATED 11 5 2
GLI1 WILD-TYPE 171 128 70
'GLI1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0548 (Fisher's exact test), Q value = 0.25

Table S1411.  Gene #126: 'GLI1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
GLI1 MUTATED 2 8 6 5
GLI1 WILD-TYPE 110 88 86 181
'GLI1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 6e-05 (Fisher's exact test), Q value = 0.0037

Table S1412.  Gene #126: 'GLI1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
GLI1 MUTATED 1 5 9 1 0 2 3
GLI1 WILD-TYPE 59 45 40 39 63 123 96

Figure S531.  Get High-res Image Gene #126: 'GLI1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'GLI1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00224 (Fisher's exact test), Q value = 0.04

Table S1413.  Gene #126: 'GLI1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
GLI1 MUTATED 13 1 0 6
GLI1 WILD-TYPE 117 77 68 190

Figure S532.  Get High-res Image Gene #126: 'GLI1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'GLI1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.264 (Fisher's exact test), Q value = 0.59

Table S1414.  Gene #126: 'GLI1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
GLI1 MUTATED 2 4 2 0 5 2 2 0 3
GLI1 WILD-TYPE 38 58 26 80 64 46 41 28 71
'GLI1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0313 (Fisher's exact test), Q value = 0.18

Table S1415.  Gene #126: 'GLI1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
GLI1 MUTATED 2 1 0 4
GLI1 WILD-TYPE 31 30 27 15

Figure S533.  Get High-res Image Gene #126: 'GLI1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'GLI1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.885 (Fisher's exact test), Q value = 1

Table S1416.  Gene #126: 'GLI1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
GLI1 MUTATED 5 0 1 1
GLI1 WILD-TYPE 49 10 23 21
'PDCD5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.122 (Fisher's exact test), Q value = 0.39

Table S1417.  Gene #127: 'PDCD5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
PDCD5 MUTATED 6 1 3 1
PDCD5 WILD-TYPE 172 182 98 19
'PDCD5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.297 (Fisher's exact test), Q value = 0.63

Table S1418.  Gene #127: 'PDCD5 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
PDCD5 MUTATED 5 1 3
PDCD5 WILD-TYPE 82 79 97
'PDCD5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.321 (Fisher's exact test), Q value = 0.65

Table S1419.  Gene #127: 'PDCD5 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
PDCD5 MUTATED 1 3 6
PDCD5 WILD-TYPE 88 157 132
'PDCD5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.328 (Fisher's exact test), Q value = 0.66

Table S1420.  Gene #127: 'PDCD5 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
PDCD5 MUTATED 5 5 0
PDCD5 WILD-TYPE 177 128 72
'PDCD5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.292 (Fisher's exact test), Q value = 0.62

Table S1421.  Gene #127: 'PDCD5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
PDCD5 MUTATED 2 3 4 2
PDCD5 WILD-TYPE 110 93 88 184
'PDCD5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0561 (Fisher's exact test), Q value = 0.26

Table S1422.  Gene #127: 'PDCD5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
PDCD5 MUTATED 2 3 1 1 3 0 1
PDCD5 WILD-TYPE 58 47 48 39 60 125 98
'PDCD5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.746 (Fisher's exact test), Q value = 1

Table S1423.  Gene #127: 'PDCD5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
PDCD5 MUTATED 2 3 1 5
PDCD5 WILD-TYPE 128 75 67 191
'PDCD5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.865 (Fisher's exact test), Q value = 1

Table S1424.  Gene #127: 'PDCD5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
PDCD5 MUTATED 2 2 1 1 1 1 1 1 1
PDCD5 WILD-TYPE 38 60 27 79 68 47 42 27 73
'PDCD5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.419 (Fisher's exact test), Q value = 0.75

Table S1425.  Gene #127: 'PDCD5 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
PDCD5 MUTATED 0 2 1 0
PDCD5 WILD-TYPE 33 29 26 19
'PDCD5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.842 (Fisher's exact test), Q value = 1

Table S1426.  Gene #127: 'PDCD5 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
PDCD5 MUTATED 2 0 0 1
PDCD5 WILD-TYPE 52 10 24 21
'BCL9L MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.174 (Fisher's exact test), Q value = 0.47

Table S1427.  Gene #128: 'BCL9L MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
BCL9L MUTATED 3 2 0 2
BCL9L WILD-TYPE 43 56 64 41
'BCL9L MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.794 (Fisher's exact test), Q value = 1

Table S1428.  Gene #128: 'BCL9L MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
BCL9L MUTATED 2 2 3
BCL9L WILD-TYPE 49 81 74
'BCL9L MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00129 (Fisher's exact test), Q value = 0.029

Table S1429.  Gene #128: 'BCL9L MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
BCL9L MUTATED 19 4 2 0
BCL9L WILD-TYPE 159 179 99 20

Figure S534.  Get High-res Image Gene #128: 'BCL9L MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'BCL9L MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0639 (Fisher's exact test), Q value = 0.27

Table S1430.  Gene #128: 'BCL9L MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
BCL9L MUTATED 10 2 5
BCL9L WILD-TYPE 77 78 95
'BCL9L MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0477 (Fisher's exact test), Q value = 0.23

Table S1431.  Gene #128: 'BCL9L MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
BCL9L MUTATED 1 6 11
BCL9L WILD-TYPE 88 154 127

Figure S535.  Get High-res Image Gene #128: 'BCL9L MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'BCL9L MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.502 (Fisher's exact test), Q value = 0.83

Table S1432.  Gene #128: 'BCL9L MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
BCL9L MUTATED 10 4 4
BCL9L WILD-TYPE 172 129 68
'BCL9L MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.034 (Fisher's exact test), Q value = 0.19

Table S1433.  Gene #128: 'BCL9L MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
BCL9L MUTATED 2 8 8 6
BCL9L WILD-TYPE 110 88 84 180

Figure S536.  Get High-res Image Gene #128: 'BCL9L MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'BCL9L MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00178 (Fisher's exact test), Q value = 0.035

Table S1434.  Gene #128: 'BCL9L MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
BCL9L MUTATED 3 3 9 2 0 3 4
BCL9L WILD-TYPE 57 47 40 38 63 122 95

Figure S537.  Get High-res Image Gene #128: 'BCL9L MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'BCL9L MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.738 (Fisher's exact test), Q value = 1

Table S1435.  Gene #128: 'BCL9L MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
BCL9L MUTATED 9 4 2 10
BCL9L WILD-TYPE 121 74 66 186
'BCL9L MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.361 (Fisher's exact test), Q value = 0.69

Table S1436.  Gene #128: 'BCL9L MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
BCL9L MUTATED 2 6 1 2 6 1 1 3 3
BCL9L WILD-TYPE 38 56 27 78 63 47 42 25 71
'BCL9L MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0237 (Fisher's exact test), Q value = 0.16

Table S1437.  Gene #128: 'BCL9L MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
BCL9L MUTATED 2 0 0 3
BCL9L WILD-TYPE 31 31 27 16

Figure S538.  Get High-res Image Gene #128: 'BCL9L MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'BCL9L MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.756 (Fisher's exact test), Q value = 1

Table S1438.  Gene #128: 'BCL9L MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
BCL9L MUTATED 4 0 1 0
BCL9L WILD-TYPE 50 10 23 22
'TPM4 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.016 (Fisher's exact test), Q value = 0.13

Table S1439.  Gene #129: 'TPM4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
TPM4 MUTATED 1 0 0 3
TPM4 WILD-TYPE 45 58 64 40

Figure S539.  Get High-res Image Gene #129: 'TPM4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'TPM4 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0395 (Fisher's exact test), Q value = 0.21

Table S1440.  Gene #129: 'TPM4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
TPM4 MUTATED 3 0 1
TPM4 WILD-TYPE 48 83 76

Figure S540.  Get High-res Image Gene #129: 'TPM4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'TPM4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.126 (Fisher's exact test), Q value = 0.39

Table S1441.  Gene #129: 'TPM4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
TPM4 MUTATED 7 1 1 0
TPM4 WILD-TYPE 171 182 100 20
'TPM4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1442.  Gene #129: 'TPM4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
TPM4 MUTATED 2 1 2
TPM4 WILD-TYPE 85 79 98
'TPM4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1443.  Gene #129: 'TPM4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
TPM4 MUTATED 1 3 2
TPM4 WILD-TYPE 88 157 136
'TPM4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.862 (Fisher's exact test), Q value = 1

Table S1444.  Gene #129: 'TPM4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
TPM4 MUTATED 2 3 1
TPM4 WILD-TYPE 180 130 71
'TPM4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.754 (Fisher's exact test), Q value = 1

Table S1445.  Gene #129: 'TPM4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
TPM4 MUTATED 1 2 1 5
TPM4 WILD-TYPE 111 94 91 181
'TPM4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0201 (Fisher's exact test), Q value = 0.14

Table S1446.  Gene #129: 'TPM4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
TPM4 MUTATED 2 0 3 0 0 0 4
TPM4 WILD-TYPE 58 50 46 40 63 125 95

Figure S541.  Get High-res Image Gene #129: 'TPM4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'TPM4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.292 (Fisher's exact test), Q value = 0.62

Table S1447.  Gene #129: 'TPM4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
TPM4 MUTATED 3 0 0 6
TPM4 WILD-TYPE 127 78 68 190
'TPM4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0297 (Fisher's exact test), Q value = 0.18

Table S1448.  Gene #129: 'TPM4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
TPM4 MUTATED 0 1 0 0 6 1 0 0 1
TPM4 WILD-TYPE 40 61 28 80 63 47 43 28 73

Figure S542.  Get High-res Image Gene #129: 'TPM4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'CYLD MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.223 (Fisher's exact test), Q value = 0.54

Table S1449.  Gene #130: 'CYLD MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
CYLD MUTATED 2 1 0 2
CYLD WILD-TYPE 44 57 64 41
'CYLD MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.74 (Fisher's exact test), Q value = 1

Table S1450.  Gene #130: 'CYLD MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
CYLD MUTATED 2 2 1
CYLD WILD-TYPE 49 81 76
'CYLD MUTATION STATUS' versus 'CN_CNMF'

P value = 0.913 (Fisher's exact test), Q value = 1

Table S1451.  Gene #130: 'CYLD MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
CYLD MUTATED 8 11 6 1
CYLD WILD-TYPE 170 172 95 19
'CYLD MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.922 (Fisher's exact test), Q value = 1

Table S1452.  Gene #130: 'CYLD MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
CYLD MUTATED 8 6 8
CYLD WILD-TYPE 79 74 92
'CYLD MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0176 (Fisher's exact test), Q value = 0.13

Table S1453.  Gene #130: 'CYLD MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
CYLD MUTATED 2 7 15
CYLD WILD-TYPE 87 153 123

Figure S543.  Get High-res Image Gene #130: 'CYLD MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'CYLD MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.821 (Fisher's exact test), Q value = 1

Table S1454.  Gene #130: 'CYLD MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
CYLD MUTATED 13 7 4
CYLD WILD-TYPE 169 126 68
'CYLD MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0778 (Fisher's exact test), Q value = 0.3

Table S1455.  Gene #130: 'CYLD MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
CYLD MUTATED 6 9 7 5
CYLD WILD-TYPE 106 87 85 181
'CYLD MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0123 (Fisher's exact test), Q value = 0.11

Table S1456.  Gene #130: 'CYLD MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
CYLD MUTATED 4 7 3 3 5 1 4
CYLD WILD-TYPE 56 43 46 37 58 124 95

Figure S544.  Get High-res Image Gene #130: 'CYLD MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CYLD MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.143 (Fisher's exact test), Q value = 0.42

Table S1457.  Gene #130: 'CYLD MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
CYLD MUTATED 11 5 5 6
CYLD WILD-TYPE 119 73 63 190
'CYLD MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.051 (Fisher's exact test), Q value = 0.24

Table S1458.  Gene #130: 'CYLD MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
CYLD MUTATED 2 5 4 2 6 0 5 1 2
CYLD WILD-TYPE 38 57 24 78 63 48 38 27 72
'CYLD MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.901 (Fisher's exact test), Q value = 1

Table S1459.  Gene #130: 'CYLD MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
CYLD MUTATED 3 2 3 1
CYLD WILD-TYPE 30 29 24 18
'CYLD MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.299 (Fisher's exact test), Q value = 0.63

Table S1460.  Gene #130: 'CYLD MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
CYLD MUTATED 3 2 3 1
CYLD WILD-TYPE 51 8 21 21
'AMOT MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.273 (Fisher's exact test), Q value = 0.6

Table S1461.  Gene #131: 'AMOT MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
AMOT MUTATED 2 0 1 0
AMOT WILD-TYPE 44 58 63 43
'AMOT MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.185 (Fisher's exact test), Q value = 0.49

Table S1462.  Gene #131: 'AMOT MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
AMOT MUTATED 2 0 1
AMOT WILD-TYPE 49 83 76
'AMOT MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0043 (Fisher's exact test), Q value = 0.06

Table S1463.  Gene #131: 'AMOT MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
AMOT MUTATED 12 1 2 1
AMOT WILD-TYPE 166 182 99 19

Figure S545.  Get High-res Image Gene #131: 'AMOT MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'AMOT MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.239 (Fisher's exact test), Q value = 0.56

Table S1464.  Gene #131: 'AMOT MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
AMOT MUTATED 5 1 6
AMOT WILD-TYPE 82 79 94
'AMOT MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.938 (Fisher's exact test), Q value = 1

Table S1465.  Gene #131: 'AMOT MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
AMOT MUTATED 3 5 6
AMOT WILD-TYPE 86 155 132
'AMOT MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1466.  Gene #131: 'AMOT MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
AMOT MUTATED 7 5 2
AMOT WILD-TYPE 175 128 70
'AMOT MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.208 (Fisher's exact test), Q value = 0.52

Table S1467.  Gene #131: 'AMOT MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
AMOT MUTATED 3 5 5 3
AMOT WILD-TYPE 109 91 87 183
'AMOT MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.026 (Fisher's exact test), Q value = 0.16

Table S1468.  Gene #131: 'AMOT MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
AMOT MUTATED 2 2 5 1 2 0 4
AMOT WILD-TYPE 58 48 44 39 61 125 95

Figure S546.  Get High-res Image Gene #131: 'AMOT MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'AMOT MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1469.  Gene #131: 'AMOT MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
AMOT MUTATED 4 2 2 7
AMOT WILD-TYPE 126 76 66 189
'AMOT MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.418 (Fisher's exact test), Q value = 0.75

Table S1470.  Gene #131: 'AMOT MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
AMOT MUTATED 2 3 0 0 4 1 2 1 2
AMOT WILD-TYPE 38 59 28 80 65 47 41 27 72
'AMOT MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.48 (Fisher's exact test), Q value = 0.81

Table S1471.  Gene #131: 'AMOT MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
AMOT MUTATED 2 0 1 0
AMOT WILD-TYPE 31 31 26 19
'AMOT MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.251 (Fisher's exact test), Q value = 0.58

Table S1472.  Gene #131: 'AMOT MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
AMOT MUTATED 1 0 0 2
AMOT WILD-TYPE 53 10 24 20
'GNPAT MUTATION STATUS' versus 'CN_CNMF'

P value = 0.171 (Fisher's exact test), Q value = 0.47

Table S1473.  Gene #132: 'GNPAT MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
GNPAT MUTATED 11 7 1 0
GNPAT WILD-TYPE 167 176 100 20
'GNPAT MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.482 (Fisher's exact test), Q value = 0.81

Table S1474.  Gene #132: 'GNPAT MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
GNPAT MUTATED 4 5 9
GNPAT WILD-TYPE 83 75 91
'GNPAT MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.105 (Fisher's exact test), Q value = 0.36

Table S1475.  Gene #132: 'GNPAT MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
GNPAT MUTATED 1 11 7
GNPAT WILD-TYPE 88 149 131
'GNPAT MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.268 (Fisher's exact test), Q value = 0.59

Table S1476.  Gene #132: 'GNPAT MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
GNPAT MUTATED 7 10 2
GNPAT WILD-TYPE 175 123 70
'GNPAT MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00407 (Fisher's exact test), Q value = 0.058

Table S1477.  Gene #132: 'GNPAT MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
GNPAT MUTATED 7 7 4 1
GNPAT WILD-TYPE 105 89 88 185

Figure S547.  Get High-res Image Gene #132: 'GNPAT MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'GNPAT MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 9e-05 (Fisher's exact test), Q value = 0.0048

Table S1478.  Gene #132: 'GNPAT MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
GNPAT MUTATED 0 2 7 3 5 0 2
GNPAT WILD-TYPE 60 48 42 37 58 125 97

Figure S548.  Get High-res Image Gene #132: 'GNPAT MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'GNPAT MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00531 (Fisher's exact test), Q value = 0.066

Table S1479.  Gene #132: 'GNPAT MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
GNPAT MUTATED 11 4 2 2
GNPAT WILD-TYPE 119 74 66 194

Figure S549.  Get High-res Image Gene #132: 'GNPAT MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'GNPAT MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.172 (Fisher's exact test), Q value = 0.47

Table S1480.  Gene #132: 'GNPAT MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
GNPAT MUTATED 4 3 0 3 4 3 2 0 0
GNPAT WILD-TYPE 36 59 28 77 65 45 41 28 74
'GNPAT MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.269 (Fisher's exact test), Q value = 0.59

Table S1481.  Gene #132: 'GNPAT MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
GNPAT MUTATED 1 1 1 3
GNPAT WILD-TYPE 32 30 26 16
'GNPAT MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.787 (Fisher's exact test), Q value = 1

Table S1482.  Gene #132: 'GNPAT MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
GNPAT MUTATED 3 1 1 1
GNPAT WILD-TYPE 51 9 23 21
'PRKAA2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.837 (Fisher's exact test), Q value = 1

Table S1483.  Gene #133: 'PRKAA2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
PRKAA2 MUTATED 2 1 2 2
PRKAA2 WILD-TYPE 44 57 62 41
'PRKAA2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.793 (Fisher's exact test), Q value = 1

Table S1484.  Gene #133: 'PRKAA2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
PRKAA2 MUTATED 2 2 3
PRKAA2 WILD-TYPE 49 81 74
'PRKAA2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00605 (Fisher's exact test), Q value = 0.071

Table S1485.  Gene #133: 'PRKAA2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
PRKAA2 MUTATED 13 2 1 0
PRKAA2 WILD-TYPE 165 181 100 20

Figure S550.  Get High-res Image Gene #133: 'PRKAA2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'PRKAA2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.434 (Fisher's exact test), Q value = 0.76

Table S1486.  Gene #133: 'PRKAA2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
PRKAA2 MUTATED 3 1 5
PRKAA2 WILD-TYPE 84 79 95
'PRKAA2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.186 (Fisher's exact test), Q value = 0.49

Table S1487.  Gene #133: 'PRKAA2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
PRKAA2 MUTATED 2 3 8
PRKAA2 WILD-TYPE 87 157 130
'PRKAA2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.527 (Fisher's exact test), Q value = 0.85

Table S1488.  Gene #133: 'PRKAA2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
PRKAA2 MUTATED 8 4 1
PRKAA2 WILD-TYPE 174 129 71
'PRKAA2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0613 (Fisher's exact test), Q value = 0.27

Table S1489.  Gene #133: 'PRKAA2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
PRKAA2 MUTATED 0 4 5 7
PRKAA2 WILD-TYPE 112 92 87 179
'PRKAA2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.419 (Fisher's exact test), Q value = 0.75

Table S1490.  Gene #133: 'PRKAA2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
PRKAA2 MUTATED 1 2 4 0 3 4 2
PRKAA2 WILD-TYPE 59 48 45 40 60 121 97
'PRKAA2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.779 (Fisher's exact test), Q value = 1

Table S1491.  Gene #133: 'PRKAA2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
PRKAA2 MUTATED 3 2 1 8
PRKAA2 WILD-TYPE 127 76 67 188
'PRKAA2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.275 (Fisher's exact test), Q value = 0.6

Table S1492.  Gene #133: 'PRKAA2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
PRKAA2 MUTATED 0 4 0 4 4 0 0 0 2
PRKAA2 WILD-TYPE 40 58 28 76 65 48 43 28 72
'PRKAA2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.357 (Fisher's exact test), Q value = 0.69

Table S1493.  Gene #133: 'PRKAA2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
PRKAA2 MUTATED 1 1 0 2
PRKAA2 WILD-TYPE 32 30 27 17
'PRKAA2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.868 (Fisher's exact test), Q value = 1

Table S1494.  Gene #133: 'PRKAA2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
PRKAA2 MUTATED 3 0 1 0
PRKAA2 WILD-TYPE 51 10 23 22
'TMEM126A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.918 (Fisher's exact test), Q value = 1

Table S1495.  Gene #134: 'TMEM126A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
TMEM126A MUTATED 2 3 2 0
TMEM126A WILD-TYPE 176 180 99 20
'TMEM126A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0956 (Fisher's exact test), Q value = 0.34

Table S1496.  Gene #134: 'TMEM126A MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
TMEM126A MUTATED 0 2 5
TMEM126A WILD-TYPE 87 78 95
'TMEM126A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0842 (Fisher's exact test), Q value = 0.31

Table S1497.  Gene #134: 'TMEM126A MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
TMEM126A MUTATED 0 4 0
TMEM126A WILD-TYPE 89 156 138
'TMEM126A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.327 (Fisher's exact test), Q value = 0.66

Table S1498.  Gene #134: 'TMEM126A MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
TMEM126A MUTATED 1 3 0
TMEM126A WILD-TYPE 181 130 72
'TMEM126A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.063 (Fisher's exact test), Q value = 0.27

Table S1499.  Gene #134: 'TMEM126A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
TMEM126A MUTATED 3 2 2 0
TMEM126A WILD-TYPE 109 94 90 186
'TMEM126A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0211 (Fisher's exact test), Q value = 0.15

Table S1500.  Gene #134: 'TMEM126A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
TMEM126A MUTATED 3 1 2 0 1 0 0
TMEM126A WILD-TYPE 57 49 47 40 62 125 99

Figure S551.  Get High-res Image Gene #134: 'TMEM126A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'TMEM126A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0386 (Fisher's exact test), Q value = 0.21

Table S1501.  Gene #134: 'TMEM126A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
TMEM126A MUTATED 4 2 1 0
TMEM126A WILD-TYPE 126 76 67 196

Figure S552.  Get High-res Image Gene #134: 'TMEM126A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'TMEM126A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.48 (Fisher's exact test), Q value = 0.81

Table S1502.  Gene #134: 'TMEM126A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
TMEM126A MUTATED 0 2 1 2 0 1 1 0 0
TMEM126A WILD-TYPE 40 60 27 78 69 47 42 28 74
'OSBPL11 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00659 (Fisher's exact test), Q value = 0.074

Table S1503.  Gene #135: 'OSBPL11 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
OSBPL11 MUTATED 4 0 0 2
OSBPL11 WILD-TYPE 42 58 64 41

Figure S553.  Get High-res Image Gene #135: 'OSBPL11 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'OSBPL11 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00189 (Fisher's exact test), Q value = 0.036

Table S1504.  Gene #135: 'OSBPL11 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
OSBPL11 MUTATED 5 0 1
OSBPL11 WILD-TYPE 46 83 76

Figure S554.  Get High-res Image Gene #135: 'OSBPL11 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'OSBPL11 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0715 (Fisher's exact test), Q value = 0.29

Table S1505.  Gene #135: 'OSBPL11 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
OSBPL11 MUTATED 12 3 3 1
OSBPL11 WILD-TYPE 166 180 98 19
'OSBPL11 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.402 (Fisher's exact test), Q value = 0.73

Table S1506.  Gene #135: 'OSBPL11 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
OSBPL11 MUTATED 4 2 7
OSBPL11 WILD-TYPE 83 78 93
'OSBPL11 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.283 (Fisher's exact test), Q value = 0.61

Table S1507.  Gene #135: 'OSBPL11 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
OSBPL11 MUTATED 4 3 7
OSBPL11 WILD-TYPE 85 157 131
'OSBPL11 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.241 (Fisher's exact test), Q value = 0.57

Table S1508.  Gene #135: 'OSBPL11 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
OSBPL11 MUTATED 10 3 1
OSBPL11 WILD-TYPE 172 130 71
'OSBPL11 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.592 (Fisher's exact test), Q value = 0.9

Table S1509.  Gene #135: 'OSBPL11 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
OSBPL11 MUTATED 4 3 6 6
OSBPL11 WILD-TYPE 108 93 86 180
'OSBPL11 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0237 (Fisher's exact test), Q value = 0.16

Table S1510.  Gene #135: 'OSBPL11 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
OSBPL11 MUTATED 2 4 4 1 3 0 5
OSBPL11 WILD-TYPE 58 46 45 39 60 125 94

Figure S555.  Get High-res Image Gene #135: 'OSBPL11 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'OSBPL11 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.391 (Fisher's exact test), Q value = 0.72

Table S1511.  Gene #135: 'OSBPL11 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
OSBPL11 MUTATED 6 4 3 4
OSBPL11 WILD-TYPE 124 74 65 192
'OSBPL11 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.115 (Fisher's exact test), Q value = 0.38

Table S1512.  Gene #135: 'OSBPL11 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
OSBPL11 MUTATED 1 3 2 3 5 0 3 0 0
OSBPL11 WILD-TYPE 39 59 26 77 64 48 40 28 74
'OSBPL11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.834 (Fisher's exact test), Q value = 1

Table S1513.  Gene #135: 'OSBPL11 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
OSBPL11 MUTATED 3 1 2 1
OSBPL11 WILD-TYPE 30 30 25 18
'OSBPL11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.731 (Fisher's exact test), Q value = 1

Table S1514.  Gene #135: 'OSBPL11 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
OSBPL11 MUTATED 3 1 2 1
OSBPL11 WILD-TYPE 51 9 22 21
'MLLT6 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.232 (Fisher's exact test), Q value = 0.55

Table S1515.  Gene #136: 'MLLT6 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
MLLT6 MUTATED 2 1 0 0
MLLT6 WILD-TYPE 44 57 64 43
'MLLT6 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.252 (Fisher's exact test), Q value = 0.58

Table S1516.  Gene #136: 'MLLT6 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
MLLT6 MUTATED 2 1 0
MLLT6 WILD-TYPE 49 82 77
'MLLT6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.168 (Fisher's exact test), Q value = 0.46

Table S1517.  Gene #136: 'MLLT6 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
MLLT6 MUTATED 11 4 2 0
MLLT6 WILD-TYPE 167 179 99 20
'MLLT6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.7 (Fisher's exact test), Q value = 0.97

Table S1518.  Gene #136: 'MLLT6 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
MLLT6 MUTATED 6 3 5
MLLT6 WILD-TYPE 81 77 95
'MLLT6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.209 (Fisher's exact test), Q value = 0.52

Table S1519.  Gene #136: 'MLLT6 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
MLLT6 MUTATED 3 4 9
MLLT6 WILD-TYPE 86 156 129
'MLLT6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.555 (Fisher's exact test), Q value = 0.87

Table S1520.  Gene #136: 'MLLT6 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
MLLT6 MUTATED 10 4 2
MLLT6 WILD-TYPE 172 129 70
'MLLT6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.175 (Fisher's exact test), Q value = 0.47

Table S1521.  Gene #136: 'MLLT6 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
MLLT6 MUTATED 4 4 6 3
MLLT6 WILD-TYPE 108 92 86 183
'MLLT6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 9e-04 (Fisher's exact test), Q value = 0.023

Table S1522.  Gene #136: 'MLLT6 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
MLLT6 MUTATED 2 2 7 0 3 0 3
MLLT6 WILD-TYPE 58 48 42 40 60 125 96

Figure S556.  Get High-res Image Gene #136: 'MLLT6 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'MLLT6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0653 (Fisher's exact test), Q value = 0.28

Table S1523.  Gene #136: 'MLLT6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
MLLT6 MUTATED 5 6 0 5
MLLT6 WILD-TYPE 125 72 68 191
'MLLT6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.09 (Fisher's exact test), Q value = 0.33

Table S1524.  Gene #136: 'MLLT6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
MLLT6 MUTATED 2 6 0 3 3 0 1 1 0
MLLT6 WILD-TYPE 38 56 28 77 66 48 42 27 74
'MLLT6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.491 (Fisher's exact test), Q value = 0.82

Table S1525.  Gene #136: 'MLLT6 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
MLLT6 MUTATED 3 1 0 1
MLLT6 WILD-TYPE 30 30 27 18
'MLLT6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.266 (Fisher's exact test), Q value = 0.59

Table S1526.  Gene #136: 'MLLT6 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
MLLT6 MUTATED 5 0 0 0
MLLT6 WILD-TYPE 49 10 24 22
'USP24 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00819 (Fisher's exact test), Q value = 0.084

Table S1527.  Gene #137: 'USP24 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
USP24 MUTATED 3 0 0 3
USP24 WILD-TYPE 43 58 64 40

Figure S557.  Get High-res Image Gene #137: 'USP24 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'USP24 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0715 (Fisher's exact test), Q value = 0.29

Table S1528.  Gene #137: 'USP24 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
USP24 MUTATED 4 1 1
USP24 WILD-TYPE 47 82 76
'USP24 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0141 (Fisher's exact test), Q value = 0.12

Table S1529.  Gene #137: 'USP24 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
USP24 MUTATED 21 8 3 1
USP24 WILD-TYPE 157 175 98 19

Figure S558.  Get High-res Image Gene #137: 'USP24 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'USP24 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0846 (Fisher's exact test), Q value = 0.31

Table S1530.  Gene #137: 'USP24 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
USP24 MUTATED 7 5 16
USP24 WILD-TYPE 80 75 84
'USP24 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0604 (Fisher's exact test), Q value = 0.27

Table S1531.  Gene #137: 'USP24 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
USP24 MUTATED 2 16 12
USP24 WILD-TYPE 87 144 126
'USP24 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.375 (Fisher's exact test), Q value = 0.71

Table S1532.  Gene #137: 'USP24 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
USP24 MUTATED 14 13 3
USP24 WILD-TYPE 168 120 69
'USP24 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0281 (Fisher's exact test), Q value = 0.17

Table S1533.  Gene #137: 'USP24 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
USP24 MUTATED 7 13 7 7
USP24 WILD-TYPE 105 83 85 179

Figure S559.  Get High-res Image Gene #137: 'USP24 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'USP24 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 3e-05 (Fisher's exact test), Q value = 0.0022

Table S1534.  Gene #137: 'USP24 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
USP24 MUTATED 7 6 9 4 2 0 6
USP24 WILD-TYPE 53 44 40 36 61 125 93

Figure S560.  Get High-res Image Gene #137: 'USP24 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'USP24 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0813 (Fisher's exact test), Q value = 0.31

Table S1535.  Gene #137: 'USP24 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
USP24 MUTATED 15 5 5 8
USP24 WILD-TYPE 115 73 63 188
'USP24 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0667 (Fisher's exact test), Q value = 0.28

Table S1536.  Gene #137: 'USP24 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
USP24 MUTATED 3 2 3 6 9 2 6 1 1
USP24 WILD-TYPE 37 60 25 74 60 46 37 27 73
'USP24 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.281 (Fisher's exact test), Q value = 0.61

Table S1537.  Gene #137: 'USP24 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
USP24 MUTATED 6 2 1 2
USP24 WILD-TYPE 27 29 26 17
'USP24 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.363 (Fisher's exact test), Q value = 0.69

Table S1538.  Gene #137: 'USP24 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
USP24 MUTATED 4 0 3 4
USP24 WILD-TYPE 50 10 21 18
'ARFGEF1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S1539.  Gene #138: 'ARFGEF1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ARFGEF1 MUTATED 2 0 0 8
ARFGEF1 WILD-TYPE 44 58 64 35

Figure S561.  Get High-res Image Gene #138: 'ARFGEF1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'ARFGEF1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0407 (Fisher's exact test), Q value = 0.21

Table S1540.  Gene #138: 'ARFGEF1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ARFGEF1 MUTATED 6 2 2
ARFGEF1 WILD-TYPE 45 81 75

Figure S562.  Get High-res Image Gene #138: 'ARFGEF1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'ARFGEF1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00053 (Fisher's exact test), Q value = 0.016

Table S1541.  Gene #138: 'ARFGEF1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ARFGEF1 MUTATED 24 4 8 1
ARFGEF1 WILD-TYPE 154 179 93 19

Figure S563.  Get High-res Image Gene #138: 'ARFGEF1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ARFGEF1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1542.  Gene #138: 'ARFGEF1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ARFGEF1 MUTATED 9 8 10
ARFGEF1 WILD-TYPE 78 72 90
'ARFGEF1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.582 (Fisher's exact test), Q value = 0.89

Table S1543.  Gene #138: 'ARFGEF1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ARFGEF1 MUTATED 4 13 10
ARFGEF1 WILD-TYPE 85 147 128
'ARFGEF1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.42 (Fisher's exact test), Q value = 0.75

Table S1544.  Gene #138: 'ARFGEF1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ARFGEF1 MUTATED 10 10 7
ARFGEF1 WILD-TYPE 172 123 65
'ARFGEF1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.187 (Fisher's exact test), Q value = 0.49

Table S1545.  Gene #138: 'ARFGEF1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ARFGEF1 MUTATED 11 11 5 10
ARFGEF1 WILD-TYPE 101 85 87 176
'ARFGEF1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00274 (Fisher's exact test), Q value = 0.046

Table S1546.  Gene #138: 'ARFGEF1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ARFGEF1 MUTATED 4 6 10 3 5 2 7
ARFGEF1 WILD-TYPE 56 44 39 37 58 123 92

Figure S564.  Get High-res Image Gene #138: 'ARFGEF1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ARFGEF1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.244 (Fisher's exact test), Q value = 0.57

Table S1547.  Gene #138: 'ARFGEF1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ARFGEF1 MUTATED 15 6 3 12
ARFGEF1 WILD-TYPE 115 72 65 184
'ARFGEF1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00143 (Fisher's exact test), Q value = 0.031

Table S1548.  Gene #138: 'ARFGEF1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ARFGEF1 MUTATED 5 5 7 4 10 2 2 0 1
ARFGEF1 WILD-TYPE 35 57 21 76 59 46 41 28 73

Figure S565.  Get High-res Image Gene #138: 'ARFGEF1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'ARFGEF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.188 (Fisher's exact test), Q value = 0.49

Table S1549.  Gene #138: 'ARFGEF1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
ARFGEF1 MUTATED 2 2 0 3
ARFGEF1 WILD-TYPE 31 29 27 16
'ARFGEF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.778 (Fisher's exact test), Q value = 1

Table S1550.  Gene #138: 'ARFGEF1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
ARFGEF1 MUTATED 3 0 2 2
ARFGEF1 WILD-TYPE 51 10 22 20
'OR5V1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.122 (Fisher's exact test), Q value = 0.39

Table S1551.  Gene #139: 'OR5V1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
OR5V1 MUTATED 2 0 0 1
OR5V1 WILD-TYPE 44 58 64 42
'OR5V1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1552.  Gene #139: 'OR5V1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
OR5V1 MUTATED 1 1 1
OR5V1 WILD-TYPE 50 82 76
'OR5V1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.919 (Fisher's exact test), Q value = 1

Table S1553.  Gene #139: 'OR5V1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
OR5V1 MUTATED 8 6 4 0
OR5V1 WILD-TYPE 170 177 97 20
'OR5V1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.713 (Fisher's exact test), Q value = 0.98

Table S1554.  Gene #139: 'OR5V1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
OR5V1 MUTATED 6 3 6
OR5V1 WILD-TYPE 81 77 94
'OR5V1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0545 (Fisher's exact test), Q value = 0.25

Table S1555.  Gene #139: 'OR5V1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
OR5V1 MUTATED 1 3 9
OR5V1 WILD-TYPE 88 157 129
'OR5V1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.316 (Fisher's exact test), Q value = 0.64

Table S1556.  Gene #139: 'OR5V1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
OR5V1 MUTATED 9 3 1
OR5V1 WILD-TYPE 173 130 71
'OR5V1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.178 (Fisher's exact test), Q value = 0.48

Table S1557.  Gene #139: 'OR5V1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
OR5V1 MUTATED 5 6 4 3
OR5V1 WILD-TYPE 107 90 88 183
'OR5V1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0121 (Fisher's exact test), Q value = 0.11

Table S1558.  Gene #139: 'OR5V1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
OR5V1 MUTATED 3 1 3 3 6 1 1
OR5V1 WILD-TYPE 57 49 46 37 57 124 98

Figure S566.  Get High-res Image Gene #139: 'OR5V1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'OR5V1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0402 (Fisher's exact test), Q value = 0.21

Table S1559.  Gene #139: 'OR5V1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
OR5V1 MUTATED 10 3 2 3
OR5V1 WILD-TYPE 120 75 66 193

Figure S567.  Get High-res Image Gene #139: 'OR5V1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'OR5V1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.111 (Fisher's exact test), Q value = 0.37

Table S1560.  Gene #139: 'OR5V1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
OR5V1 MUTATED 4 4 1 1 4 1 2 1 0
OR5V1 WILD-TYPE 36 58 27 79 65 47 41 27 74
'OR5V1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.71 (Fisher's exact test), Q value = 0.98

Table S1561.  Gene #139: 'OR5V1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
OR5V1 MUTATED 1 2 2 0
OR5V1 WILD-TYPE 32 29 25 19
'OR5V1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.215 (Fisher's exact test), Q value = 0.52

Table S1562.  Gene #139: 'OR5V1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
OR5V1 MUTATED 1 1 1 2
OR5V1 WILD-TYPE 53 9 23 20
'PRB4 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.426 (Fisher's exact test), Q value = 0.75

Table S1563.  Gene #140: 'PRB4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
PRB4 MUTATED 0 0 2 1
PRB4 WILD-TYPE 46 58 62 42
'PRB4 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.789 (Fisher's exact test), Q value = 1

Table S1564.  Gene #140: 'PRB4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
PRB4 MUTATED 0 2 1
PRB4 WILD-TYPE 51 81 76
'PRB4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.694 (Fisher's exact test), Q value = 0.97

Table S1565.  Gene #140: 'PRB4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
PRB4 MUTATED 4 5 2 1
PRB4 WILD-TYPE 174 178 99 19
'PRB4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.223 (Fisher's exact test), Q value = 0.54

Table S1566.  Gene #140: 'PRB4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
PRB4 MUTATED 4 4 1
PRB4 WILD-TYPE 83 76 99
'PRB4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.42 (Fisher's exact test), Q value = 0.75

Table S1567.  Gene #140: 'PRB4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
PRB4 MUTATED 2 2 5
PRB4 WILD-TYPE 87 158 133
'PRB4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.169 (Fisher's exact test), Q value = 0.46

Table S1568.  Gene #140: 'PRB4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
PRB4 MUTATED 7 2 0
PRB4 WILD-TYPE 175 131 72
'PRB4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.179 (Fisher's exact test), Q value = 0.48

Table S1569.  Gene #140: 'PRB4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
PRB4 MUTATED 3 2 5 2
PRB4 WILD-TYPE 109 94 87 184
'PRB4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0612 (Fisher's exact test), Q value = 0.27

Table S1570.  Gene #140: 'PRB4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
PRB4 MUTATED 2 0 0 3 4 2 1
PRB4 WILD-TYPE 58 50 49 37 59 123 98
'PRB4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.458 (Fisher's exact test), Q value = 0.78

Table S1571.  Gene #140: 'PRB4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
PRB4 MUTATED 5 3 1 3
PRB4 WILD-TYPE 125 75 67 193
'PRB4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.472 (Fisher's exact test), Q value = 0.8

Table S1572.  Gene #140: 'PRB4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
PRB4 MUTATED 1 2 2 3 0 1 2 0 1
PRB4 WILD-TYPE 39 60 26 77 69 47 41 28 73
'PRB4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1573.  Gene #140: 'PRB4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
PRB4 MUTATED 1 1 1 1
PRB4 WILD-TYPE 32 30 26 18
'PRB4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.544 (Fisher's exact test), Q value = 0.86

Table S1574.  Gene #140: 'PRB4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
PRB4 MUTATED 2 0 0 2
PRB4 WILD-TYPE 52 10 24 20
'TRIP11 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0262 (Fisher's exact test), Q value = 0.16

Table S1575.  Gene #141: 'TRIP11 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
TRIP11 MUTATED 3 1 0 4
TRIP11 WILD-TYPE 43 57 64 39

Figure S568.  Get High-res Image Gene #141: 'TRIP11 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'TRIP11 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.53 (Fisher's exact test), Q value = 0.85

Table S1576.  Gene #141: 'TRIP11 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
TRIP11 MUTATED 3 2 3
TRIP11 WILD-TYPE 48 81 74
'TRIP11 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00402 (Fisher's exact test), Q value = 0.058

Table S1577.  Gene #141: 'TRIP11 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
TRIP11 MUTATED 18 6 1 1
TRIP11 WILD-TYPE 160 177 100 19

Figure S569.  Get High-res Image Gene #141: 'TRIP11 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'TRIP11 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.646 (Fisher's exact test), Q value = 0.93

Table S1578.  Gene #141: 'TRIP11 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
TRIP11 MUTATED 4 6 8
TRIP11 WILD-TYPE 83 74 92
'TRIP11 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0915 (Fisher's exact test), Q value = 0.33

Table S1579.  Gene #141: 'TRIP11 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
TRIP11 MUTATED 1 9 10
TRIP11 WILD-TYPE 88 151 128
'TRIP11 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0541 (Fisher's exact test), Q value = 0.25

Table S1580.  Gene #141: 'TRIP11 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
TRIP11 MUTATED 11 9 0
TRIP11 WILD-TYPE 171 124 72
'TRIP11 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.743 (Fisher's exact test), Q value = 1

Table S1581.  Gene #141: 'TRIP11 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
TRIP11 MUTATED 6 7 5 8
TRIP11 WILD-TYPE 106 89 87 178
'TRIP11 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00919 (Fisher's exact test), Q value = 0.09

Table S1582.  Gene #141: 'TRIP11 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
TRIP11 MUTATED 4 3 8 0 4 2 5
TRIP11 WILD-TYPE 56 47 41 40 59 123 94

Figure S570.  Get High-res Image Gene #141: 'TRIP11 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'TRIP11 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.278 (Fisher's exact test), Q value = 0.61

Table S1583.  Gene #141: 'TRIP11 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
TRIP11 MUTATED 11 3 2 8
TRIP11 WILD-TYPE 119 75 66 188
'TRIP11 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0476 (Fisher's exact test), Q value = 0.23

Table S1584.  Gene #141: 'TRIP11 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
TRIP11 MUTATED 4 3 3 2 8 1 2 0 1
TRIP11 WILD-TYPE 36 59 25 78 61 47 41 28 73

Figure S571.  Get High-res Image Gene #141: 'TRIP11 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'TRIP11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.348 (Fisher's exact test), Q value = 0.68

Table S1585.  Gene #141: 'TRIP11 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
TRIP11 MUTATED 2 0 2 2
TRIP11 WILD-TYPE 31 31 25 17
'TRIP11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.787 (Fisher's exact test), Q value = 1

Table S1586.  Gene #141: 'TRIP11 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
TRIP11 MUTATED 3 1 1 1
TRIP11 WILD-TYPE 51 9 23 21
'SLK MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0225 (Fisher's exact test), Q value = 0.15

Table S1587.  Gene #142: 'SLK MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
SLK MUTATED 2 0 0 3
SLK WILD-TYPE 44 58 64 40

Figure S572.  Get High-res Image Gene #142: 'SLK MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'SLK MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.638 (Fisher's exact test), Q value = 0.93

Table S1588.  Gene #142: 'SLK MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
SLK MUTATED 2 1 2
SLK WILD-TYPE 49 82 75
'SLK MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00175 (Fisher's exact test), Q value = 0.035

Table S1589.  Gene #142: 'SLK MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
SLK MUTATED 17 7 0 1
SLK WILD-TYPE 161 176 101 19

Figure S573.  Get High-res Image Gene #142: 'SLK MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'SLK MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.455 (Fisher's exact test), Q value = 0.78

Table S1590.  Gene #142: 'SLK MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
SLK MUTATED 6 8 5
SLK WILD-TYPE 81 72 95
'SLK MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.34 (Fisher's exact test), Q value = 0.67

Table S1591.  Gene #142: 'SLK MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
SLK MUTATED 2 9 9
SLK WILD-TYPE 87 151 129
'SLK MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.157 (Fisher's exact test), Q value = 0.45

Table S1592.  Gene #142: 'SLK MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
SLK MUTATED 7 11 2
SLK WILD-TYPE 175 122 70
'SLK MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.68 (Fisher's exact test), Q value = 0.96

Table S1593.  Gene #142: 'SLK MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
SLK MUTATED 7 6 5 7
SLK WILD-TYPE 105 90 87 179
'SLK MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00659 (Fisher's exact test), Q value = 0.074

Table S1594.  Gene #142: 'SLK MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
SLK MUTATED 4 2 5 2 6 0 6
SLK WILD-TYPE 56 48 44 38 57 125 93

Figure S574.  Get High-res Image Gene #142: 'SLK MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'SLK MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.108 (Fisher's exact test), Q value = 0.36

Table S1595.  Gene #142: 'SLK MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
SLK MUTATED 9 7 1 7
SLK WILD-TYPE 121 71 67 189
'SLK MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.661 (Fisher's exact test), Q value = 0.95

Table S1596.  Gene #142: 'SLK MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
SLK MUTATED 3 5 2 2 5 3 1 1 2
SLK WILD-TYPE 37 57 26 78 64 45 42 27 72
'SLK MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.343 (Fisher's exact test), Q value = 0.67

Table S1597.  Gene #142: 'SLK MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
SLK MUTATED 2 3 0 2
SLK WILD-TYPE 31 28 27 17
'SLK MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.681 (Fisher's exact test), Q value = 0.96

Table S1598.  Gene #142: 'SLK MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
SLK MUTATED 3 1 1 2
SLK WILD-TYPE 51 9 23 20
'PON3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.135 (Fisher's exact test), Q value = 0.41

Table S1599.  Gene #143: 'PON3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
PON3 MUTATED 8 6 0 0
PON3 WILD-TYPE 170 177 101 20
'PON3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.936 (Fisher's exact test), Q value = 1

Table S1600.  Gene #143: 'PON3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
PON3 MUTATED 4 3 5
PON3 WILD-TYPE 83 77 95
'PON3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.286 (Fisher's exact test), Q value = 0.61

Table S1601.  Gene #143: 'PON3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
PON3 MUTATED 2 3 7
PON3 WILD-TYPE 87 157 131
'PON3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.396 (Fisher's exact test), Q value = 0.72

Table S1602.  Gene #143: 'PON3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
PON3 MUTATED 7 2 3
PON3 WILD-TYPE 175 131 69
'PON3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.496 (Fisher's exact test), Q value = 0.82

Table S1603.  Gene #143: 'PON3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
PON3 MUTATED 4 3 4 3
PON3 WILD-TYPE 108 93 88 183
'PON3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.183 (Fisher's exact test), Q value = 0.48

Table S1604.  Gene #143: 'PON3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
PON3 MUTATED 2 1 4 2 2 1 2
PON3 WILD-TYPE 58 49 45 38 61 124 97
'PON3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.62 (Fisher's exact test), Q value = 0.92

Table S1605.  Gene #143: 'PON3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
PON3 MUTATED 5 2 3 4
PON3 WILD-TYPE 125 76 65 192
'PON3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.137 (Fisher's exact test), Q value = 0.41

Table S1606.  Gene #143: 'PON3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
PON3 MUTATED 0 3 2 1 2 0 4 0 2
PON3 WILD-TYPE 40 59 26 79 67 48 39 28 72
'PON3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0557 (Fisher's exact test), Q value = 0.26

Table S1607.  Gene #143: 'PON3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
PON3 MUTATED 1 0 3 3
PON3 WILD-TYPE 32 31 24 16
'PON3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.779 (Fisher's exact test), Q value = 1

Table S1608.  Gene #143: 'PON3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
PON3 MUTATED 3 0 2 2
PON3 WILD-TYPE 51 10 22 20
'SLAMF7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.443 (Fisher's exact test), Q value = 0.77

Table S1609.  Gene #144: 'SLAMF7 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
SLAMF7 MUTATED 6 2 3 0
SLAMF7 WILD-TYPE 172 181 98 20
'SLAMF7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.48 (Fisher's exact test), Q value = 0.81

Table S1610.  Gene #144: 'SLAMF7 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
SLAMF7 MUTATED 4 1 4
SLAMF7 WILD-TYPE 83 79 96
'SLAMF7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.772 (Fisher's exact test), Q value = 1

Table S1611.  Gene #144: 'SLAMF7 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
SLAMF7 MUTATED 3 3 4
SLAMF7 WILD-TYPE 86 157 134
'SLAMF7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.763 (Fisher's exact test), Q value = 1

Table S1612.  Gene #144: 'SLAMF7 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
SLAMF7 MUTATED 6 3 1
SLAMF7 WILD-TYPE 176 130 71
'SLAMF7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0418 (Fisher's exact test), Q value = 0.22

Table S1613.  Gene #144: 'SLAMF7 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
SLAMF7 MUTATED 0 3 5 3
SLAMF7 WILD-TYPE 112 93 87 183

Figure S575.  Get High-res Image Gene #144: 'SLAMF7 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'SLAMF7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0259 (Fisher's exact test), Q value = 0.16

Table S1614.  Gene #144: 'SLAMF7 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
SLAMF7 MUTATED 0 2 2 0 4 0 3
SLAMF7 WILD-TYPE 60 48 47 40 59 125 96

Figure S576.  Get High-res Image Gene #144: 'SLAMF7 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'SLAMF7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.294 (Fisher's exact test), Q value = 0.62

Table S1615.  Gene #144: 'SLAMF7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
SLAMF7 MUTATED 4 3 0 3
SLAMF7 WILD-TYPE 126 75 68 193
'SLAMF7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.566 (Fisher's exact test), Q value = 0.87

Table S1616.  Gene #144: 'SLAMF7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
SLAMF7 MUTATED 2 3 1 2 1 0 0 0 1
SLAMF7 WILD-TYPE 38 59 27 78 68 48 43 28 73
'ATG5 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.629 (Fisher's exact test), Q value = 0.93

Table S1617.  Gene #145: 'ATG5 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ATG5 MUTATED 1 1 0 1
ATG5 WILD-TYPE 45 57 64 42
'ATG5 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1618.  Gene #145: 'ATG5 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ATG5 MUTATED 1 1 1
ATG5 WILD-TYPE 50 82 76
'ATG5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.296 (Fisher's exact test), Q value = 0.62

Table S1619.  Gene #145: 'ATG5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ATG5 MUTATED 5 2 1 1
ATG5 WILD-TYPE 173 181 100 19
'ATG5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.383 (Fisher's exact test), Q value = 0.71

Table S1620.  Gene #145: 'ATG5 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ATG5 MUTATED 1 1 4
ATG5 WILD-TYPE 86 79 96
'ATG5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.197 (Fisher's exact test), Q value = 0.5

Table S1621.  Gene #145: 'ATG5 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ATG5 MUTATED 0 5 2
ATG5 WILD-TYPE 89 155 136
'ATG5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.142 (Fisher's exact test), Q value = 0.42

Table S1622.  Gene #145: 'ATG5 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ATG5 MUTATED 2 5 0
ATG5 WILD-TYPE 180 128 72
'ATG5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.968 (Fisher's exact test), Q value = 1

Table S1623.  Gene #145: 'ATG5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ATG5 MUTATED 2 2 2 3
ATG5 WILD-TYPE 110 94 90 183
'ATG5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.013 (Fisher's exact test), Q value = 0.11

Table S1624.  Gene #145: 'ATG5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ATG5 MUTATED 3 0 4 0 0 1 1
ATG5 WILD-TYPE 57 50 45 40 63 124 98

Figure S577.  Get High-res Image Gene #145: 'ATG5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ATG5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.342 (Fisher's exact test), Q value = 0.67

Table S1625.  Gene #145: 'ATG5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ATG5 MUTATED 4 0 0 4
ATG5 WILD-TYPE 126 78 68 192
'ATG5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00831 (Fisher's exact test), Q value = 0.085

Table S1626.  Gene #145: 'ATG5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ATG5 MUTATED 2 0 0 0 5 1 0 0 0
ATG5 WILD-TYPE 38 62 28 80 64 47 43 28 74

Figure S578.  Get High-res Image Gene #145: 'ATG5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'SCAI MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.119 (Fisher's exact test), Q value = 0.39

Table S1627.  Gene #146: 'SCAI MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
SCAI MUTATED 2 0 0 1
SCAI WILD-TYPE 44 58 64 42
'SCAI MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1628.  Gene #146: 'SCAI MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
SCAI MUTATED 1 1 1
SCAI WILD-TYPE 50 82 76
'SCAI MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0287 (Fisher's exact test), Q value = 0.17

Table S1629.  Gene #146: 'SCAI MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
SCAI MUTATED 9 1 5 0
SCAI WILD-TYPE 169 182 96 20

Figure S579.  Get High-res Image Gene #146: 'SCAI MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'SCAI MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.149 (Fisher's exact test), Q value = 0.43

Table S1630.  Gene #146: 'SCAI MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
SCAI MUTATED 3 1 7
SCAI WILD-TYPE 84 79 93
'SCAI MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.14 (Fisher's exact test), Q value = 0.42

Table S1631.  Gene #146: 'SCAI MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
SCAI MUTATED 0 2 5
SCAI WILD-TYPE 89 158 133
'SCAI MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.365 (Fisher's exact test), Q value = 0.69

Table S1632.  Gene #146: 'SCAI MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
SCAI MUTATED 5 2 0
SCAI WILD-TYPE 177 131 72
'SCAI MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.726 (Fisher's exact test), Q value = 0.99

Table S1633.  Gene #146: 'SCAI MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
SCAI MUTATED 4 3 4 4
SCAI WILD-TYPE 108 93 88 182
'SCAI MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0574 (Fisher's exact test), Q value = 0.26

Table S1634.  Gene #146: 'SCAI MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
SCAI MUTATED 3 2 5 1 1 1 2
SCAI WILD-TYPE 57 48 44 39 62 124 97
'SCAI MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.633 (Fisher's exact test), Q value = 0.93

Table S1635.  Gene #146: 'SCAI MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
SCAI MUTATED 6 3 1 5
SCAI WILD-TYPE 124 75 67 191
'SCAI MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.17 (Fisher's exact test), Q value = 0.47

Table S1636.  Gene #146: 'SCAI MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
SCAI MUTATED 1 4 1 3 5 0 1 0 0
SCAI WILD-TYPE 39 58 27 77 64 48 42 28 74
'TAF7L MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.154 (Fisher's exact test), Q value = 0.44

Table S1637.  Gene #147: 'TAF7L MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
TAF7L MUTATED 0 1 0 2
TAF7L WILD-TYPE 46 57 64 41
'TAF7L MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.618 (Fisher's exact test), Q value = 0.92

Table S1638.  Gene #147: 'TAF7L MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
TAF7L MUTATED 0 1 2
TAF7L WILD-TYPE 51 82 75
'TAF7L MUTATION STATUS' versus 'CN_CNMF'

P value = 0.246 (Fisher's exact test), Q value = 0.57

Table S1639.  Gene #147: 'TAF7L MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
TAF7L MUTATED 8 2 3 0
TAF7L WILD-TYPE 170 181 98 20
'TAF7L MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.369 (Fisher's exact test), Q value = 0.7

Table S1640.  Gene #147: 'TAF7L MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
TAF7L MUTATED 4 1 5
TAF7L WILD-TYPE 83 79 95
'TAF7L MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.511 (Fisher's exact test), Q value = 0.83

Table S1641.  Gene #147: 'TAF7L MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
TAF7L MUTATED 1 3 5
TAF7L WILD-TYPE 88 157 133
'TAF7L MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1642.  Gene #147: 'TAF7L MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
TAF7L MUTATED 5 3 1
TAF7L WILD-TYPE 177 130 71
'TAF7L MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.163 (Fisher's exact test), Q value = 0.46

Table S1643.  Gene #147: 'TAF7L MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
TAF7L MUTATED 2 6 2 3
TAF7L WILD-TYPE 110 90 90 183
'TAF7L MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.199 (Fisher's exact test), Q value = 0.5

Table S1644.  Gene #147: 'TAF7L MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
TAF7L MUTATED 1 2 4 1 2 1 2
TAF7L WILD-TYPE 59 48 45 39 61 124 97
'TAF7L MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.208 (Fisher's exact test), Q value = 0.52

Table S1645.  Gene #147: 'TAF7L MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
TAF7L MUTATED 7 2 1 3
TAF7L WILD-TYPE 123 76 67 193
'TAF7L MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0624 (Fisher's exact test), Q value = 0.27

Table S1646.  Gene #147: 'TAF7L MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
TAF7L MUTATED 3 2 2 0 3 2 1 0 0
TAF7L WILD-TYPE 37 60 26 80 66 46 42 28 74
'TAF7L MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.247 (Fisher's exact test), Q value = 0.57

Table S1647.  Gene #147: 'TAF7L MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
TAF7L MUTATED 0 2 1 2
TAF7L WILD-TYPE 33 29 26 17
'TAF7L MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.381 (Fisher's exact test), Q value = 0.71

Table S1648.  Gene #147: 'TAF7L MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
TAF7L MUTATED 2 1 2 0
TAF7L WILD-TYPE 52 9 22 22
'ECT2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00729 (Fisher's exact test), Q value = 0.079

Table S1649.  Gene #148: 'ECT2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ECT2 MUTATED 4 0 0 2
ECT2 WILD-TYPE 42 58 64 41

Figure S580.  Get High-res Image Gene #148: 'ECT2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'ECT2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0141 (Fisher's exact test), Q value = 0.12

Table S1650.  Gene #148: 'ECT2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ECT2 MUTATED 4 0 2
ECT2 WILD-TYPE 47 83 75

Figure S581.  Get High-res Image Gene #148: 'ECT2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'ECT2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0468 (Fisher's exact test), Q value = 0.23

Table S1651.  Gene #148: 'ECT2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ECT2 MUTATED 13 3 3 0
ECT2 WILD-TYPE 165 180 98 20

Figure S582.  Get High-res Image Gene #148: 'ECT2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ECT2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1652.  Gene #148: 'ECT2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ECT2 MUTATED 4 4 5
ECT2 WILD-TYPE 83 76 95
'ECT2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.144 (Fisher's exact test), Q value = 0.42

Table S1653.  Gene #148: 'ECT2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ECT2 MUTATED 1 6 9
ECT2 WILD-TYPE 88 154 129
'ECT2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.35 (Fisher's exact test), Q value = 0.68

Table S1654.  Gene #148: 'ECT2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ECT2 MUTATED 10 3 3
ECT2 WILD-TYPE 172 130 69
'ECT2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.638 (Fisher's exact test), Q value = 0.93

Table S1655.  Gene #148: 'ECT2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ECT2 MUTATED 4 6 3 6
ECT2 WILD-TYPE 108 90 89 180
'ECT2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00628 (Fisher's exact test), Q value = 0.073

Table S1656.  Gene #148: 'ECT2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ECT2 MUTATED 2 1 6 2 3 0 5
ECT2 WILD-TYPE 58 49 43 38 60 125 94

Figure S583.  Get High-res Image Gene #148: 'ECT2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ECT2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.249 (Fisher's exact test), Q value = 0.57

Table S1657.  Gene #148: 'ECT2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ECT2 MUTATED 8 4 1 5
ECT2 WILD-TYPE 122 74 67 191
'ECT2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0177 (Fisher's exact test), Q value = 0.13

Table S1658.  Gene #148: 'ECT2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ECT2 MUTATED 2 5 1 1 6 0 3 0 0
ECT2 WILD-TYPE 38 57 27 79 63 48 40 28 74

Figure S584.  Get High-res Image Gene #148: 'ECT2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'ECT2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.347 (Fisher's exact test), Q value = 0.67

Table S1659.  Gene #148: 'ECT2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
ECT2 MUTATED 1 2 0 2
ECT2 WILD-TYPE 32 29 27 17
'ECT2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.52 (Fisher's exact test), Q value = 0.84

Table S1660.  Gene #148: 'ECT2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
ECT2 MUTATED 3 1 1 0
ECT2 WILD-TYPE 51 9 23 22
'DUSP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.513 (Fisher's exact test), Q value = 0.83

Table S1661.  Gene #149: 'DUSP1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
DUSP1 MUTATED 4 1 2 0
DUSP1 WILD-TYPE 174 182 99 20
'DUSP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.774 (Fisher's exact test), Q value = 1

Table S1662.  Gene #149: 'DUSP1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
DUSP1 MUTATED 1 2 3
DUSP1 WILD-TYPE 86 78 97
'DUSP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0146 (Fisher's exact test), Q value = 0.12

Table S1663.  Gene #149: 'DUSP1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
DUSP1 MUTATED 4 0 2
DUSP1 WILD-TYPE 85 160 136

Figure S585.  Get High-res Image Gene #149: 'DUSP1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'DUSP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.759 (Fisher's exact test), Q value = 1

Table S1664.  Gene #149: 'DUSP1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
DUSP1 MUTATED 4 1 1
DUSP1 WILD-TYPE 178 132 71
'DUSP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.221 (Fisher's exact test), Q value = 0.53

Table S1665.  Gene #149: 'DUSP1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
DUSP1 MUTATED 1 2 3 1
DUSP1 WILD-TYPE 111 94 89 185
'DUSP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.315 (Fisher's exact test), Q value = 0.64

Table S1666.  Gene #149: 'DUSP1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
DUSP1 MUTATED 1 2 1 1 1 1 0
DUSP1 WILD-TYPE 59 48 48 39 62 124 99
'DUSP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0112 (Fisher's exact test), Q value = 0.1

Table S1667.  Gene #149: 'DUSP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
DUSP1 MUTATED 5 2 0 0
DUSP1 WILD-TYPE 125 76 68 196

Figure S586.  Get High-res Image Gene #149: 'DUSP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'DUSP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0607 (Fisher's exact test), Q value = 0.27

Table S1668.  Gene #149: 'DUSP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
DUSP1 MUTATED 3 1 1 1 0 0 1 0 0
DUSP1 WILD-TYPE 37 61 27 79 69 48 42 28 74
'DUSP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.21 (Fisher's exact test), Q value = 0.52

Table S1669.  Gene #149: 'DUSP1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
DUSP1 MUTATED 0 2 0 1
DUSP1 WILD-TYPE 33 29 27 18
'DUSP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.565 (Fisher's exact test), Q value = 0.87

Table S1670.  Gene #149: 'DUSP1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
DUSP1 MUTATED 3 0 0 0
DUSP1 WILD-TYPE 51 10 24 22
'ZFX MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00634 (Fisher's exact test), Q value = 0.073

Table S1671.  Gene #150: 'ZFX MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ZFX MUTATED 4 0 0 1
ZFX WILD-TYPE 42 58 64 42

Figure S587.  Get High-res Image Gene #150: 'ZFX MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'ZFX MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0183 (Fisher's exact test), Q value = 0.14

Table S1672.  Gene #150: 'ZFX MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ZFX MUTATED 4 1 0
ZFX WILD-TYPE 47 82 77

Figure S588.  Get High-res Image Gene #150: 'ZFX MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'ZFX MUTATION STATUS' versus 'CN_CNMF'

P value = 0.258 (Fisher's exact test), Q value = 0.58

Table S1673.  Gene #150: 'ZFX MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ZFX MUTATED 8 4 1 1
ZFX WILD-TYPE 170 179 100 19
'ZFX MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.583 (Fisher's exact test), Q value = 0.89

Table S1674.  Gene #150: 'ZFX MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ZFX MUTATED 2 2 5
ZFX WILD-TYPE 85 78 95
'ZFX MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.381 (Fisher's exact test), Q value = 0.71

Table S1675.  Gene #150: 'ZFX MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ZFX MUTATED 4 4 2
ZFX WILD-TYPE 85 156 136
'ZFX MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.839 (Fisher's exact test), Q value = 1

Table S1676.  Gene #150: 'ZFX MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ZFX MUTATED 4 4 2
ZFX WILD-TYPE 178 129 70
'ZFX MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.532 (Fisher's exact test), Q value = 0.85

Table S1677.  Gene #150: 'ZFX MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ZFX MUTATED 2 5 2 5
ZFX WILD-TYPE 110 91 90 181
'ZFX MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0306 (Fisher's exact test), Q value = 0.18

Table S1678.  Gene #150: 'ZFX MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ZFX MUTATED 1 2 4 1 1 0 5
ZFX WILD-TYPE 59 48 45 39 62 125 94

Figure S589.  Get High-res Image Gene #150: 'ZFX MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ZFX MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.96 (Fisher's exact test), Q value = 1

Table S1679.  Gene #150: 'ZFX MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ZFX MUTATED 4 2 1 7
ZFX WILD-TYPE 126 76 67 189
'ZFX MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0738 (Fisher's exact test), Q value = 0.29

Table S1680.  Gene #150: 'ZFX MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ZFX MUTATED 2 2 1 1 6 0 1 1 0
ZFX WILD-TYPE 38 60 27 79 63 48 42 27 74
'ZFX MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.252 (Fisher's exact test), Q value = 0.58

Table S1681.  Gene #150: 'ZFX MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
ZFX MUTATED 2 0 0 1
ZFX WILD-TYPE 31 31 27 18
'ZFX MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1682.  Gene #150: 'ZFX MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
ZFX MUTATED 2 0 1 0
ZFX WILD-TYPE 52 10 23 22
'ATP11B MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0318 (Fisher's exact test), Q value = 0.18

Table S1683.  Gene #151: 'ATP11B MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ATP11B MUTATED 3 0 0 1
ATP11B WILD-TYPE 43 58 64 42

Figure S590.  Get High-res Image Gene #151: 'ATP11B MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'ATP11B MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.555 (Fisher's exact test), Q value = 0.87

Table S1684.  Gene #151: 'ATP11B MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ATP11B MUTATED 2 1 1
ATP11B WILD-TYPE 49 82 76
'ATP11B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0653 (Fisher's exact test), Q value = 0.28

Table S1685.  Gene #151: 'ATP11B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ATP11B MUTATED 13 4 2 0
ATP11B WILD-TYPE 165 179 99 20
'ATP11B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.504 (Fisher's exact test), Q value = 0.83

Table S1686.  Gene #151: 'ATP11B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ATP11B MUTATED 7 4 4
ATP11B WILD-TYPE 80 76 96
'ATP11B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0426 (Fisher's exact test), Q value = 0.22

Table S1687.  Gene #151: 'ATP11B MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ATP11B MUTATED 1 4 10
ATP11B WILD-TYPE 88 156 128

Figure S591.  Get High-res Image Gene #151: 'ATP11B MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'ATP11B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.508 (Fisher's exact test), Q value = 0.83

Table S1688.  Gene #151: 'ATP11B MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ATP11B MUTATED 9 5 1
ATP11B WILD-TYPE 173 128 71
'ATP11B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.202 (Fisher's exact test), Q value = 0.51

Table S1689.  Gene #151: 'ATP11B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ATP11B MUTATED 4 7 4 4
ATP11B WILD-TYPE 108 89 88 182
'ATP11B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.067 (Fisher's exact test), Q value = 0.28

Table S1690.  Gene #151: 'ATP11B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ATP11B MUTATED 3 2 5 3 2 1 3
ATP11B WILD-TYPE 57 48 44 37 61 124 96
'ATP11B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.264 (Fisher's exact test), Q value = 0.59

Table S1691.  Gene #151: 'ATP11B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ATP11B MUTATED 9 3 1 6
ATP11B WILD-TYPE 121 75 67 190
'ATP11B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.321 (Fisher's exact test), Q value = 0.65

Table S1692.  Gene #151: 'ATP11B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ATP11B MUTATED 2 4 3 2 4 2 0 1 1
ATP11B WILD-TYPE 38 58 25 78 65 46 43 27 73
'ATP11B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.724 (Fisher's exact test), Q value = 0.99

Table S1693.  Gene #151: 'ATP11B MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
ATP11B MUTATED 2 1 1 2
ATP11B WILD-TYPE 31 30 26 17
'ATP11B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.364 (Fisher's exact test), Q value = 0.69

Table S1694.  Gene #151: 'ATP11B MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
ATP11B MUTATED 2 0 3 1
ATP11B WILD-TYPE 52 10 21 21
'NEFH MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0654 (Fisher's exact test), Q value = 0.28

Table S1695.  Gene #152: 'NEFH MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
NEFH MUTATED 1 0 0 2
NEFH WILD-TYPE 45 58 64 41
'NEFH MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1696.  Gene #152: 'NEFH MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
NEFH MUTATED 1 1 1
NEFH WILD-TYPE 50 82 76
'NEFH MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0498 (Fisher's exact test), Q value = 0.24

Table S1697.  Gene #152: 'NEFH MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
NEFH MUTATED 9 1 3 0
NEFH WILD-TYPE 169 182 98 20

Figure S592.  Get High-res Image Gene #152: 'NEFH MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'NEFH MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.308 (Fisher's exact test), Q value = 0.64

Table S1698.  Gene #152: 'NEFH MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
NEFH MUTATED 5 1 4
NEFH WILD-TYPE 82 79 96
'NEFH MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.526 (Fisher's exact test), Q value = 0.85

Table S1699.  Gene #152: 'NEFH MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
NEFH MUTATED 1 6 5
NEFH WILD-TYPE 88 154 133
'NEFH MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.926 (Fisher's exact test), Q value = 1

Table S1700.  Gene #152: 'NEFH MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
NEFH MUTATED 5 5 2
NEFH WILD-TYPE 177 128 70
'NEFH MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.219 (Fisher's exact test), Q value = 0.53

Table S1701.  Gene #152: 'NEFH MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
NEFH MUTATED 3 6 2 3
NEFH WILD-TYPE 109 90 90 183
'NEFH MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00705 (Fisher's exact test), Q value = 0.077

Table S1702.  Gene #152: 'NEFH MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
NEFH MUTATED 5 1 4 1 1 0 2
NEFH WILD-TYPE 55 49 45 39 62 125 97

Figure S593.  Get High-res Image Gene #152: 'NEFH MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'NEFH MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0558 (Fisher's exact test), Q value = 0.26

Table S1703.  Gene #152: 'NEFH MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
NEFH MUTATED 7 0 0 7
NEFH WILD-TYPE 123 78 68 189
'NEFH MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.525 (Fisher's exact test), Q value = 0.85

Table S1704.  Gene #152: 'NEFH MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
NEFH MUTATED 2 1 2 4 3 1 0 0 1
NEFH WILD-TYPE 38 61 26 76 66 47 43 28 73
'ECM2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0276 (Fisher's exact test), Q value = 0.17

Table S1705.  Gene #153: 'ECM2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ECM2 MUTATED 3 0 0 2
ECM2 WILD-TYPE 43 58 64 41

Figure S594.  Get High-res Image Gene #153: 'ECM2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'ECM2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00625 (Fisher's exact test), Q value = 0.073

Table S1706.  Gene #153: 'ECM2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ECM2 MUTATED 4 0 1
ECM2 WILD-TYPE 47 83 76

Figure S595.  Get High-res Image Gene #153: 'ECM2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'ECM2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0234 (Fisher's exact test), Q value = 0.16

Table S1707.  Gene #153: 'ECM2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ECM2 MUTATED 9 5 1 3
ECM2 WILD-TYPE 169 178 100 17

Figure S596.  Get High-res Image Gene #153: 'ECM2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ECM2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00628 (Fisher's exact test), Q value = 0.073

Table S1708.  Gene #153: 'ECM2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ECM2 MUTATED 9 0 6
ECM2 WILD-TYPE 78 80 94

Figure S597.  Get High-res Image Gene #153: 'ECM2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'ECM2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.679 (Fisher's exact test), Q value = 0.96

Table S1709.  Gene #153: 'ECM2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ECM2 MUTATED 3 7 8
ECM2 WILD-TYPE 86 153 130
'ECM2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1710.  Gene #153: 'ECM2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ECM2 MUTATED 9 6 3
ECM2 WILD-TYPE 173 127 69
'ECM2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.456 (Fisher's exact test), Q value = 0.78

Table S1711.  Gene #153: 'ECM2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ECM2 MUTATED 3 5 6 6
ECM2 WILD-TYPE 109 91 86 180
'ECM2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.163 (Fisher's exact test), Q value = 0.46

Table S1712.  Gene #153: 'ECM2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ECM2 MUTATED 2 3 4 1 3 1 6
ECM2 WILD-TYPE 58 47 45 39 60 124 93
'ECM2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.194 (Fisher's exact test), Q value = 0.5

Table S1713.  Gene #153: 'ECM2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ECM2 MUTATED 8 3 0 8
ECM2 WILD-TYPE 122 75 68 188
'ECM2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.824 (Fisher's exact test), Q value = 1

Table S1714.  Gene #153: 'ECM2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ECM2 MUTATED 3 2 1 4 4 1 0 1 3
ECM2 WILD-TYPE 37 60 27 76 65 47 43 27 71
'ECM2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.873 (Fisher's exact test), Q value = 1

Table S1715.  Gene #153: 'ECM2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
ECM2 MUTATED 1 1 0 1
ECM2 WILD-TYPE 32 30 27 18
'ECM2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.692 (Fisher's exact test), Q value = 0.97

Table S1716.  Gene #153: 'ECM2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
ECM2 MUTATED 1 0 1 1
ECM2 WILD-TYPE 53 10 23 21
'CHD3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00024 (Fisher's exact test), Q value = 0.0094

Table S1717.  Gene #154: 'CHD3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
CHD3 MUTATED 4 0 0 6
CHD3 WILD-TYPE 42 58 64 37

Figure S598.  Get High-res Image Gene #154: 'CHD3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'CHD3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00025 (Fisher's exact test), Q value = 0.0096

Table S1718.  Gene #154: 'CHD3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
CHD3 MUTATED 8 1 1
CHD3 WILD-TYPE 43 82 76

Figure S599.  Get High-res Image Gene #154: 'CHD3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'CHD3 MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S1719.  Gene #154: 'CHD3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
CHD3 MUTATED 24 1 0 0
CHD3 WILD-TYPE 154 182 101 20

Figure S600.  Get High-res Image Gene #154: 'CHD3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'CHD3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0714 (Fisher's exact test), Q value = 0.29

Table S1720.  Gene #154: 'CHD3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
CHD3 MUTATED 5 1 9
CHD3 WILD-TYPE 82 79 91
'CHD3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.132 (Fisher's exact test), Q value = 0.41

Table S1721.  Gene #154: 'CHD3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
CHD3 MUTATED 5 6 13
CHD3 WILD-TYPE 84 154 125
'CHD3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.287 (Fisher's exact test), Q value = 0.62

Table S1722.  Gene #154: 'CHD3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
CHD3 MUTATED 13 5 6
CHD3 WILD-TYPE 169 128 66
'CHD3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0354 (Fisher's exact test), Q value = 0.19

Table S1723.  Gene #154: 'CHD3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
CHD3 MUTATED 1 9 5 10
CHD3 WILD-TYPE 111 87 87 176

Figure S601.  Get High-res Image Gene #154: 'CHD3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'CHD3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S1724.  Gene #154: 'CHD3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
CHD3 MUTATED 1 1 12 1 1 0 9
CHD3 WILD-TYPE 59 49 37 39 62 125 90

Figure S602.  Get High-res Image Gene #154: 'CHD3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CHD3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0855 (Fisher's exact test), Q value = 0.32

Table S1725.  Gene #154: 'CHD3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
CHD3 MUTATED 5 4 0 14
CHD3 WILD-TYPE 125 74 68 182
'CHD3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S1726.  Gene #154: 'CHD3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
CHD3 MUTATED 2 5 1 0 14 0 0 0 1
CHD3 WILD-TYPE 38 57 27 80 55 48 43 28 73

Figure S603.  Get High-res Image Gene #154: 'CHD3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'CHD3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0241 (Fisher's exact test), Q value = 0.16

Table S1727.  Gene #154: 'CHD3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
CHD3 MUTATED 1 0 0 3
CHD3 WILD-TYPE 32 31 27 16

Figure S604.  Get High-res Image Gene #154: 'CHD3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'CHD3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.67 (Fisher's exact test), Q value = 0.95

Table S1728.  Gene #154: 'CHD3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
CHD3 MUTATED 2 0 2 0
CHD3 WILD-TYPE 52 10 22 22
'KLK10 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.176 (Fisher's exact test), Q value = 0.48

Table S1729.  Gene #155: 'KLK10 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
KLK10 MUTATED 4 2 0 1
KLK10 WILD-TYPE 174 181 101 19
'KLK10 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.712 (Fisher's exact test), Q value = 0.98

Table S1730.  Gene #155: 'KLK10 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
KLK10 MUTATED 3 1 3
KLK10 WILD-TYPE 84 79 97
'KLK10 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0781 (Fisher's exact test), Q value = 0.3

Table S1731.  Gene #155: 'KLK10 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
KLK10 MUTATED 0 1 5
KLK10 WILD-TYPE 89 159 133
'KLK10 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.337 (Fisher's exact test), Q value = 0.66

Table S1732.  Gene #155: 'KLK10 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
KLK10 MUTATED 5 1 0
KLK10 WILD-TYPE 177 132 72
'KLK10 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.145 (Fisher's exact test), Q value = 0.42

Table S1733.  Gene #155: 'KLK10 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
KLK10 MUTATED 1 3 3 1
KLK10 WILD-TYPE 111 93 89 185
'KLK10 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0152 (Fisher's exact test), Q value = 0.12

Table S1734.  Gene #155: 'KLK10 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
KLK10 MUTATED 1 0 4 1 1 0 1
KLK10 WILD-TYPE 59 50 45 39 62 125 98

Figure S605.  Get High-res Image Gene #155: 'KLK10 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'KLK10 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.22 (Fisher's exact test), Q value = 0.53

Table S1735.  Gene #155: 'KLK10 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
KLK10 MUTATED 4 2 1 1
KLK10 WILD-TYPE 126 76 67 195
'KLK10 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.388 (Fisher's exact test), Q value = 0.72

Table S1736.  Gene #155: 'KLK10 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
KLK10 MUTATED 0 1 0 1 4 1 1 0 0
KLK10 WILD-TYPE 40 61 28 79 65 47 42 28 74
'KLK10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0844 (Fisher's exact test), Q value = 0.31

Table S1737.  Gene #155: 'KLK10 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
KLK10 MUTATED 0 1 0 2
KLK10 WILD-TYPE 33 30 27 17
'KLK10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1738.  Gene #155: 'KLK10 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
KLK10 MUTATED 2 0 1 0
KLK10 WILD-TYPE 52 10 23 22
'DST MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.001 (Fisher's exact test), Q value = 0.024

Table S1739.  Gene #156: 'DST MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
DST MUTATED 8 1 1 6
DST WILD-TYPE 38 57 63 37

Figure S606.  Get High-res Image Gene #156: 'DST MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'DST MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0145 (Fisher's exact test), Q value = 0.12

Table S1740.  Gene #156: 'DST MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
DST MUTATED 9 4 3
DST WILD-TYPE 42 79 74

Figure S607.  Get High-res Image Gene #156: 'DST MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'DST MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00055 (Fisher's exact test), Q value = 0.016

Table S1741.  Gene #156: 'DST MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
DST MUTATED 43 25 7 1
DST WILD-TYPE 135 158 94 19

Figure S608.  Get High-res Image Gene #156: 'DST MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'DST MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0662 (Fisher's exact test), Q value = 0.28

Table S1742.  Gene #156: 'DST MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
DST MUTATED 24 11 25
DST WILD-TYPE 63 69 75
'DST MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0337 (Fisher's exact test), Q value = 0.19

Table S1743.  Gene #156: 'DST MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
DST MUTATED 10 22 32
DST WILD-TYPE 79 138 106

Figure S609.  Get High-res Image Gene #156: 'DST MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'DST MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.025 (Fisher's exact test), Q value = 0.16

Table S1744.  Gene #156: 'DST MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
DST MUTATED 40 17 7
DST WILD-TYPE 142 116 65

Figure S610.  Get High-res Image Gene #156: 'DST MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'DST MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00018 (Fisher's exact test), Q value = 0.0078

Table S1745.  Gene #156: 'DST MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
DST MUTATED 12 21 26 18
DST WILD-TYPE 100 75 66 168

Figure S611.  Get High-res Image Gene #156: 'DST MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'DST MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S1746.  Gene #156: 'DST MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
DST MUTATED 10 13 21 5 8 5 15
DST WILD-TYPE 50 37 28 35 55 120 84

Figure S612.  Get High-res Image Gene #156: 'DST MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'DST MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00228 (Fisher's exact test), Q value = 0.041

Table S1747.  Gene #156: 'DST MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
DST MUTATED 29 18 4 24
DST WILD-TYPE 101 60 64 172

Figure S613.  Get High-res Image Gene #156: 'DST MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'DST MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.014 (Fisher's exact test), Q value = 0.12

Table S1748.  Gene #156: 'DST MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
DST MUTATED 6 19 5 9 16 6 5 4 5
DST WILD-TYPE 34 43 23 71 53 42 38 24 69

Figure S614.  Get High-res Image Gene #156: 'DST MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'DST MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.169 (Fisher's exact test), Q value = 0.47

Table S1749.  Gene #156: 'DST MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
DST MUTATED 4 7 4 7
DST WILD-TYPE 29 24 23 12
'DST MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.895 (Fisher's exact test), Q value = 1

Table S1750.  Gene #156: 'DST MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
DST MUTATED 12 2 5 3
DST WILD-TYPE 42 8 19 19
'NEUROD1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.064 (Fisher's exact test), Q value = 0.27

Table S1751.  Gene #157: 'NEUROD1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
NEUROD1 MUTATED 1 0 0 2
NEUROD1 WILD-TYPE 45 58 64 41
'NEUROD1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.182 (Fisher's exact test), Q value = 0.48

Table S1752.  Gene #157: 'NEUROD1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
NEUROD1 MUTATED 2 0 1
NEUROD1 WILD-TYPE 49 83 76
'NEUROD1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.163 (Fisher's exact test), Q value = 0.46

Table S1753.  Gene #157: 'NEUROD1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
NEUROD1 MUTATED 7 3 0 0
NEUROD1 WILD-TYPE 171 180 101 20
'NEUROD1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0679 (Fisher's exact test), Q value = 0.28

Table S1754.  Gene #157: 'NEUROD1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
NEUROD1 MUTATED 5 0 2
NEUROD1 WILD-TYPE 82 80 98
'NEUROD1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1755.  Gene #157: 'NEUROD1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
NEUROD1 MUTATED 2 4 4
NEUROD1 WILD-TYPE 87 156 134
'NEUROD1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.839 (Fisher's exact test), Q value = 1

Table S1756.  Gene #157: 'NEUROD1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
NEUROD1 MUTATED 4 4 2
NEUROD1 WILD-TYPE 178 129 70
'NEUROD1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.161 (Fisher's exact test), Q value = 0.45

Table S1757.  Gene #157: 'NEUROD1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
NEUROD1 MUTATED 1 4 0 5
NEUROD1 WILD-TYPE 111 92 92 181
'NEUROD1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.494 (Fisher's exact test), Q value = 0.82

Table S1758.  Gene #157: 'NEUROD1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
NEUROD1 MUTATED 1 2 0 1 1 1 4
NEUROD1 WILD-TYPE 59 48 49 39 62 124 95
'NEUROD1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.209 (Fisher's exact test), Q value = 0.52

Table S1759.  Gene #157: 'NEUROD1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
NEUROD1 MUTATED 3 0 0 7
NEUROD1 WILD-TYPE 127 78 68 189
'NEUROD1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.4 (Fisher's exact test), Q value = 0.73

Table S1760.  Gene #157: 'NEUROD1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
NEUROD1 MUTATED 1 0 1 2 4 0 0 0 2
NEUROD1 WILD-TYPE 39 62 27 78 65 48 43 28 72
'KIAA1804 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.268 (Fisher's exact test), Q value = 0.59

Table S1761.  Gene #158: 'KIAA1804 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
KIAA1804 MUTATED 3 1 6 4
KIAA1804 WILD-TYPE 43 57 58 39
'KIAA1804 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.941 (Fisher's exact test), Q value = 1

Table S1762.  Gene #158: 'KIAA1804 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
KIAA1804 MUTATED 4 5 5
KIAA1804 WILD-TYPE 47 78 72
'KIAA1804 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0207 (Fisher's exact test), Q value = 0.15

Table S1763.  Gene #158: 'KIAA1804 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
KIAA1804 MUTATED 16 6 2 2
KIAA1804 WILD-TYPE 162 177 99 18

Figure S615.  Get High-res Image Gene #158: 'KIAA1804 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'KIAA1804 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0842 (Fisher's exact test), Q value = 0.31

Table S1764.  Gene #158: 'KIAA1804 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
KIAA1804 MUTATED 3 1 8
KIAA1804 WILD-TYPE 84 79 92
'KIAA1804 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.305 (Fisher's exact test), Q value = 0.63

Table S1765.  Gene #158: 'KIAA1804 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
KIAA1804 MUTATED 3 13 7
KIAA1804 WILD-TYPE 86 147 131
'KIAA1804 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.351 (Fisher's exact test), Q value = 0.68

Table S1766.  Gene #158: 'KIAA1804 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
KIAA1804 MUTATED 8 11 4
KIAA1804 WILD-TYPE 174 122 68
'KIAA1804 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.253 (Fisher's exact test), Q value = 0.58

Table S1767.  Gene #158: 'KIAA1804 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
KIAA1804 MUTATED 3 6 3 14
KIAA1804 WILD-TYPE 109 90 89 172
'KIAA1804 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0253 (Fisher's exact test), Q value = 0.16

Table S1768.  Gene #158: 'KIAA1804 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
KIAA1804 MUTATED 3 0 6 1 1 5 10
KIAA1804 WILD-TYPE 57 50 43 39 62 120 89

Figure S616.  Get High-res Image Gene #158: 'KIAA1804 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'KIAA1804 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0816 (Fisher's exact test), Q value = 0.31

Table S1769.  Gene #158: 'KIAA1804 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
KIAA1804 MUTATED 6 2 1 17
KIAA1804 WILD-TYPE 124 76 67 179
'KIAA1804 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.474 (Fisher's exact test), Q value = 0.8

Table S1770.  Gene #158: 'KIAA1804 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
KIAA1804 MUTATED 1 2 1 2 8 3 2 2 5
KIAA1804 WILD-TYPE 39 60 27 78 61 45 41 26 69
'KIAA1804 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.137 (Fisher's exact test), Q value = 0.41

Table S1771.  Gene #158: 'KIAA1804 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
KIAA1804 MUTATED 1 0 0 2
KIAA1804 WILD-TYPE 32 31 27 17
'KIAA1804 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1772.  Gene #158: 'KIAA1804 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
KIAA1804 MUTATED 2 0 1 0
KIAA1804 WILD-TYPE 52 10 23 22
'PIK3IP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0738 (Fisher's exact test), Q value = 0.29

Table S1773.  Gene #159: 'PIK3IP1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
PIK3IP1 MUTATED 6 2 0 1
PIK3IP1 WILD-TYPE 172 181 101 19
'PIK3IP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.143 (Fisher's exact test), Q value = 0.42

Table S1774.  Gene #159: 'PIK3IP1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
PIK3IP1 MUTATED 4 0 4
PIK3IP1 WILD-TYPE 83 80 96
'PIK3IP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.381 (Fisher's exact test), Q value = 0.71

Table S1775.  Gene #159: 'PIK3IP1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
PIK3IP1 MUTATED 1 2 5
PIK3IP1 WILD-TYPE 88 158 133
'PIK3IP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.292 (Fisher's exact test), Q value = 0.62

Table S1776.  Gene #159: 'PIK3IP1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
PIK3IP1 MUTATED 6 2 0
PIK3IP1 WILD-TYPE 176 131 72
'PIK3IP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00768 (Fisher's exact test), Q value = 0.082

Table S1777.  Gene #159: 'PIK3IP1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
PIK3IP1 MUTATED 0 5 3 1
PIK3IP1 WILD-TYPE 112 91 89 185

Figure S617.  Get High-res Image Gene #159: 'PIK3IP1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'PIK3IP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0109 (Fisher's exact test), Q value = 0.1

Table S1778.  Gene #159: 'PIK3IP1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
PIK3IP1 MUTATED 1 2 4 1 0 1 0
PIK3IP1 WILD-TYPE 59 48 45 39 63 124 99

Figure S618.  Get High-res Image Gene #159: 'PIK3IP1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'PIK3IP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00296 (Fisher's exact test), Q value = 0.049

Table S1779.  Gene #159: 'PIK3IP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
PIK3IP1 MUTATED 7 1 1 0
PIK3IP1 WILD-TYPE 123 77 67 196

Figure S619.  Get High-res Image Gene #159: 'PIK3IP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'PIK3IP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.649 (Fisher's exact test), Q value = 0.94

Table S1780.  Gene #159: 'PIK3IP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
PIK3IP1 MUTATED 1 1 1 0 3 1 1 0 1
PIK3IP1 WILD-TYPE 39 61 27 80 66 47 42 28 73
'PIK3IP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.785 (Fisher's exact test), Q value = 1

Table S1781.  Gene #159: 'PIK3IP1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
PIK3IP1 MUTATED 1 0 1 1
PIK3IP1 WILD-TYPE 32 31 26 18
'PIK3IP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1782.  Gene #159: 'PIK3IP1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
PIK3IP1 MUTATED 2 0 1 0
PIK3IP1 WILD-TYPE 52 10 23 22
'C10ORF79 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00152 (Fisher's exact test), Q value = 0.032

Table S1783.  Gene #160: 'C10ORF79 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
C10ORF79 MUTATED 1 1 0 6
C10ORF79 WILD-TYPE 45 57 64 37

Figure S620.  Get High-res Image Gene #160: 'C10ORF79 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'C10ORF79 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.311 (Fisher's exact test), Q value = 0.64

Table S1784.  Gene #160: 'C10ORF79 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
C10ORF79 MUTATED 4 2 2
C10ORF79 WILD-TYPE 47 81 75
'C10ORF79 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0288 (Fisher's exact test), Q value = 0.17

Table S1785.  Gene #160: 'C10ORF79 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
C10ORF79 MUTATED 19 6 7 0
C10ORF79 WILD-TYPE 159 177 94 20

Figure S621.  Get High-res Image Gene #160: 'C10ORF79 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'C10ORF79 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.272 (Fisher's exact test), Q value = 0.6

Table S1786.  Gene #160: 'C10ORF79 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
C10ORF79 MUTATED 11 6 6
C10ORF79 WILD-TYPE 76 74 94
'C10ORF79 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.622 (Fisher's exact test), Q value = 0.92

Table S1787.  Gene #160: 'C10ORF79 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
C10ORF79 MUTATED 4 12 11
C10ORF79 WILD-TYPE 85 148 127
'C10ORF79 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.186 (Fisher's exact test), Q value = 0.49

Table S1788.  Gene #160: 'C10ORF79 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
C10ORF79 MUTATED 12 13 2
C10ORF79 WILD-TYPE 170 120 70
'C10ORF79 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.338 (Fisher's exact test), Q value = 0.67

Table S1789.  Gene #160: 'C10ORF79 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
C10ORF79 MUTATED 5 8 9 10
C10ORF79 WILD-TYPE 107 88 83 176
'C10ORF79 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00649 (Fisher's exact test), Q value = 0.074

Table S1790.  Gene #160: 'C10ORF79 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
C10ORF79 MUTATED 5 6 6 1 4 1 9
C10ORF79 WILD-TYPE 55 44 43 39 59 124 90

Figure S622.  Get High-res Image Gene #160: 'C10ORF79 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'C10ORF79 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.254 (Fisher's exact test), Q value = 0.58

Table S1791.  Gene #160: 'C10ORF79 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
C10ORF79 MUTATED 8 9 3 10
C10ORF79 WILD-TYPE 122 69 65 186
'C10ORF79 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0681 (Fisher's exact test), Q value = 0.28

Table S1792.  Gene #160: 'C10ORF79 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
C10ORF79 MUTATED 4 8 3 3 6 0 3 1 2
C10ORF79 WILD-TYPE 36 54 25 77 63 48 40 27 72
'C10ORF79 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.467 (Fisher's exact test), Q value = 0.79

Table S1793.  Gene #160: 'C10ORF79 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
C10ORF79 MUTATED 3 1 2 3
C10ORF79 WILD-TYPE 30 30 25 16
'C10ORF79 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.322 (Fisher's exact test), Q value = 0.65

Table S1794.  Gene #160: 'C10ORF79 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
C10ORF79 MUTATED 6 0 3 0
C10ORF79 WILD-TYPE 48 10 21 22
'KRT2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.336 (Fisher's exact test), Q value = 0.66

Table S1795.  Gene #161: 'KRT2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
KRT2 MUTATED 7 3 5 0
KRT2 WILD-TYPE 171 180 96 20
'KRT2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.579 (Fisher's exact test), Q value = 0.88

Table S1796.  Gene #161: 'KRT2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
KRT2 MUTATED 3 4 7
KRT2 WILD-TYPE 84 76 93
'KRT2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.14 (Fisher's exact test), Q value = 0.42

Table S1797.  Gene #161: 'KRT2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
KRT2 MUTATED 0 6 6
KRT2 WILD-TYPE 89 154 132
'KRT2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.461 (Fisher's exact test), Q value = 0.79

Table S1798.  Gene #161: 'KRT2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
KRT2 MUTATED 8 3 1
KRT2 WILD-TYPE 174 130 71
'KRT2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00652 (Fisher's exact test), Q value = 0.074

Table S1799.  Gene #161: 'KRT2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
KRT2 MUTATED 3 4 7 1
KRT2 WILD-TYPE 109 92 85 185

Figure S623.  Get High-res Image Gene #161: 'KRT2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'KRT2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00038 (Fisher's exact test), Q value = 0.013

Table S1800.  Gene #161: 'KRT2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
KRT2 MUTATED 0 2 4 2 6 1 0
KRT2 WILD-TYPE 60 48 45 38 57 124 99

Figure S624.  Get High-res Image Gene #161: 'KRT2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'KRT2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0327 (Fisher's exact test), Q value = 0.18

Table S1801.  Gene #161: 'KRT2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
KRT2 MUTATED 5 6 2 2
KRT2 WILD-TYPE 125 72 66 194

Figure S625.  Get High-res Image Gene #161: 'KRT2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'KRT2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0155 (Fisher's exact test), Q value = 0.12

Table S1802.  Gene #161: 'KRT2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
KRT2 MUTATED 3 6 2 2 1 0 1 0 0
KRT2 WILD-TYPE 37 56 26 78 68 48 42 28 74

Figure S626.  Get High-res Image Gene #161: 'KRT2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'KRT2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.699 (Fisher's exact test), Q value = 0.97

Table S1803.  Gene #161: 'KRT2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
KRT2 MUTATED 2 1 0 1
KRT2 WILD-TYPE 31 30 27 18
'KRT2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.375 (Fisher's exact test), Q value = 0.7

Table S1804.  Gene #161: 'KRT2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
KRT2 MUTATED 2 1 0 1
KRT2 WILD-TYPE 52 9 24 21
'HTR2A MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00807 (Fisher's exact test), Q value = 0.084

Table S1805.  Gene #162: 'HTR2A MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
HTR2A MUTATED 0 0 0 3
HTR2A WILD-TYPE 46 58 64 40

Figure S627.  Get High-res Image Gene #162: 'HTR2A MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'HTR2A MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1806.  Gene #162: 'HTR2A MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
HTR2A MUTATED 1 1 1
HTR2A WILD-TYPE 50 82 76
'HTR2A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.904 (Fisher's exact test), Q value = 1

Table S1807.  Gene #162: 'HTR2A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
HTR2A MUTATED 10 8 4 1
HTR2A WILD-TYPE 168 175 97 19
'HTR2A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1808.  Gene #162: 'HTR2A MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
HTR2A MUTATED 6 6 8
HTR2A WILD-TYPE 81 74 92
'HTR2A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0796 (Fisher's exact test), Q value = 0.3

Table S1809.  Gene #162: 'HTR2A MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
HTR2A MUTATED 1 11 10
HTR2A WILD-TYPE 88 149 128
'HTR2A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.918 (Fisher's exact test), Q value = 1

Table S1810.  Gene #162: 'HTR2A MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
HTR2A MUTATED 11 8 3
HTR2A WILD-TYPE 171 125 69
'HTR2A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0429 (Fisher's exact test), Q value = 0.22

Table S1811.  Gene #162: 'HTR2A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
HTR2A MUTATED 7 6 7 3
HTR2A WILD-TYPE 105 90 85 183

Figure S628.  Get High-res Image Gene #162: 'HTR2A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'HTR2A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00017 (Fisher's exact test), Q value = 0.0075

Table S1812.  Gene #162: 'HTR2A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
HTR2A MUTATED 7 5 5 2 2 0 2
HTR2A WILD-TYPE 53 45 44 38 61 125 97

Figure S629.  Get High-res Image Gene #162: 'HTR2A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'HTR2A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0105 (Fisher's exact test), Q value = 0.098

Table S1813.  Gene #162: 'HTR2A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
HTR2A MUTATED 12 4 3 3
HTR2A WILD-TYPE 118 74 65 193

Figure S630.  Get High-res Image Gene #162: 'HTR2A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'HTR2A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.141 (Fisher's exact test), Q value = 0.42

Table S1814.  Gene #162: 'HTR2A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
HTR2A MUTATED 4 3 1 6 4 1 3 0 0
HTR2A WILD-TYPE 36 59 27 74 65 47 40 28 74
'HTR2A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.965 (Fisher's exact test), Q value = 1

Table S1815.  Gene #162: 'HTR2A MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
HTR2A MUTATED 3 2 2 2
HTR2A WILD-TYPE 30 29 25 17
'HTR2A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.371 (Fisher's exact test), Q value = 0.7

Table S1816.  Gene #162: 'HTR2A MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
HTR2A MUTATED 3 0 4 2
HTR2A WILD-TYPE 51 10 20 20
'PTK2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0167 (Fisher's exact test), Q value = 0.13

Table S1817.  Gene #163: 'PTK2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
PTK2 MUTATED 1 0 0 3
PTK2 WILD-TYPE 45 58 64 40

Figure S631.  Get High-res Image Gene #163: 'PTK2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'PTK2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0622 (Fisher's exact test), Q value = 0.27

Table S1818.  Gene #163: 'PTK2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
PTK2 MUTATED 3 1 0
PTK2 WILD-TYPE 48 82 77
'PTK2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0189 (Fisher's exact test), Q value = 0.14

Table S1819.  Gene #163: 'PTK2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
PTK2 MUTATED 15 4 2 0
PTK2 WILD-TYPE 163 179 99 20

Figure S632.  Get High-res Image Gene #163: 'PTK2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'PTK2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.042 (Fisher's exact test), Q value = 0.22

Table S1820.  Gene #163: 'PTK2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
PTK2 MUTATED 6 1 10
PTK2 WILD-TYPE 81 79 90

Figure S633.  Get High-res Image Gene #163: 'PTK2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'PTK2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0294 (Fisher's exact test), Q value = 0.18

Table S1821.  Gene #163: 'PTK2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
PTK2 MUTATED 0 10 8
PTK2 WILD-TYPE 89 150 130

Figure S634.  Get High-res Image Gene #163: 'PTK2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'PTK2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0466 (Fisher's exact test), Q value = 0.23

Table S1822.  Gene #163: 'PTK2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
PTK2 MUTATED 6 11 1
PTK2 WILD-TYPE 176 122 71

Figure S635.  Get High-res Image Gene #163: 'PTK2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'PTK2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0185 (Fisher's exact test), Q value = 0.14

Table S1823.  Gene #163: 'PTK2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
PTK2 MUTATED 3 10 4 4
PTK2 WILD-TYPE 109 86 88 182

Figure S636.  Get High-res Image Gene #163: 'PTK2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'PTK2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00052 (Fisher's exact test), Q value = 0.016

Table S1824.  Gene #163: 'PTK2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
PTK2 MUTATED 2 6 6 2 1 0 4
PTK2 WILD-TYPE 58 44 43 38 62 125 95

Figure S637.  Get High-res Image Gene #163: 'PTK2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'PTK2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.382 (Fisher's exact test), Q value = 0.71

Table S1825.  Gene #163: 'PTK2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
PTK2 MUTATED 9 3 1 8
PTK2 WILD-TYPE 121 75 67 188
'PTK2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.579 (Fisher's exact test), Q value = 0.88

Table S1826.  Gene #163: 'PTK2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
PTK2 MUTATED 3 4 2 3 5 1 1 1 1
PTK2 WILD-TYPE 37 58 26 77 64 47 42 27 73
'PTK2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.391 (Fisher's exact test), Q value = 0.72

Table S1827.  Gene #163: 'PTK2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
PTK2 MUTATED 2 1 0 2
PTK2 WILD-TYPE 31 30 27 17
'PTK2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.426 (Fisher's exact test), Q value = 0.75

Table S1828.  Gene #163: 'PTK2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
PTK2 MUTATED 3 1 0 1
PTK2 WILD-TYPE 51 9 24 21
'AXIN2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.179 (Fisher's exact test), Q value = 0.48

Table S1829.  Gene #164: 'AXIN2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
AXIN2 MUTATED 3 3 0 2
AXIN2 WILD-TYPE 43 55 64 41
'AXIN2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.593 (Fisher's exact test), Q value = 0.9

Table S1830.  Gene #164: 'AXIN2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
AXIN2 MUTATED 3 3 2
AXIN2 WILD-TYPE 48 80 75
'AXIN2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0105 (Fisher's exact test), Q value = 0.098

Table S1831.  Gene #164: 'AXIN2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
AXIN2 MUTATED 17 5 2 0
AXIN2 WILD-TYPE 161 178 99 20

Figure S638.  Get High-res Image Gene #164: 'AXIN2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'AXIN2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.297 (Fisher's exact test), Q value = 0.63

Table S1832.  Gene #164: 'AXIN2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
AXIN2 MUTATED 7 2 6
AXIN2 WILD-TYPE 80 78 94
'AXIN2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.267 (Fisher's exact test), Q value = 0.59

Table S1833.  Gene #164: 'AXIN2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
AXIN2 MUTATED 2 10 10
AXIN2 WILD-TYPE 87 150 128
'AXIN2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.774 (Fisher's exact test), Q value = 1

Table S1834.  Gene #164: 'AXIN2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
AXIN2 MUTATED 9 9 4
AXIN2 WILD-TYPE 173 124 68
'AXIN2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.211 (Fisher's exact test), Q value = 0.52

Table S1835.  Gene #164: 'AXIN2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
AXIN2 MUTATED 2 6 7 9
AXIN2 WILD-TYPE 110 90 85 177
'AXIN2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0234 (Fisher's exact test), Q value = 0.16

Table S1836.  Gene #164: 'AXIN2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
AXIN2 MUTATED 3 3 8 1 1 3 5
AXIN2 WILD-TYPE 57 47 41 39 62 122 94

Figure S639.  Get High-res Image Gene #164: 'AXIN2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'AXIN2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.669 (Fisher's exact test), Q value = 0.95

Table S1837.  Gene #164: 'AXIN2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
AXIN2 MUTATED 9 3 2 9
AXIN2 WILD-TYPE 121 75 66 187
'AXIN2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.126 (Fisher's exact test), Q value = 0.39

Table S1838.  Gene #164: 'AXIN2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
AXIN2 MUTATED 2 5 3 2 5 0 3 2 1
AXIN2 WILD-TYPE 38 57 25 78 64 48 40 26 73
'AXIN2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0239 (Fisher's exact test), Q value = 0.16

Table S1839.  Gene #164: 'AXIN2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
AXIN2 MUTATED 1 0 0 3
AXIN2 WILD-TYPE 32 31 27 16

Figure S640.  Get High-res Image Gene #164: 'AXIN2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'AXIN2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.433 (Fisher's exact test), Q value = 0.76

Table S1840.  Gene #164: 'AXIN2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
AXIN2 MUTATED 4 0 0 0
AXIN2 WILD-TYPE 50 10 24 22
'TM9SF2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00474 (Fisher's exact test), Q value = 0.062

Table S1841.  Gene #165: 'TM9SF2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
TM9SF2 MUTATED 10 1 0 0
TM9SF2 WILD-TYPE 168 182 101 20

Figure S641.  Get High-res Image Gene #165: 'TM9SF2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'TM9SF2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.113 (Fisher's exact test), Q value = 0.37

Table S1842.  Gene #165: 'TM9SF2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
TM9SF2 MUTATED 3 0 5
TM9SF2 WILD-TYPE 84 80 95
'TM9SF2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.113 (Fisher's exact test), Q value = 0.37

Table S1843.  Gene #165: 'TM9SF2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
TM9SF2 MUTATED 0 6 2
TM9SF2 WILD-TYPE 89 154 136
'TM9SF2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.158 (Fisher's exact test), Q value = 0.45

Table S1844.  Gene #165: 'TM9SF2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
TM9SF2 MUTATED 3 5 0
TM9SF2 WILD-TYPE 179 128 72
'TM9SF2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.509 (Fisher's exact test), Q value = 0.83

Table S1845.  Gene #165: 'TM9SF2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
TM9SF2 MUTATED 1 4 2 4
TM9SF2 WILD-TYPE 111 92 90 182
'TM9SF2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0178 (Fisher's exact test), Q value = 0.13

Table S1846.  Gene #165: 'TM9SF2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
TM9SF2 MUTATED 1 1 4 1 0 0 4
TM9SF2 WILD-TYPE 59 49 45 39 63 125 95

Figure S642.  Get High-res Image Gene #165: 'TM9SF2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'TM9SF2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.162 (Fisher's exact test), Q value = 0.45

Table S1847.  Gene #165: 'TM9SF2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
TM9SF2 MUTATED 6 1 0 3
TM9SF2 WILD-TYPE 124 77 68 193
'TM9SF2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.333 (Fisher's exact test), Q value = 0.66

Table S1848.  Gene #165: 'TM9SF2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
TM9SF2 MUTATED 3 0 1 2 2 0 1 0 1
TM9SF2 WILD-TYPE 37 62 27 78 67 48 42 28 73
'TM9SF2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0944 (Fisher's exact test), Q value = 0.34

Table S1849.  Gene #165: 'TM9SF2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
TM9SF2 MUTATED 2 0 0 2
TM9SF2 WILD-TYPE 31 31 27 17
'TM9SF2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.869 (Fisher's exact test), Q value = 1

Table S1850.  Gene #165: 'TM9SF2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
TM9SF2 MUTATED 3 0 1 0
TM9SF2 WILD-TYPE 51 10 23 22
'FAHD2A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.106 (Fisher's exact test), Q value = 0.36

Table S1851.  Gene #166: 'FAHD2A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
FAHD2A MUTATED 6 1 0 0
FAHD2A WILD-TYPE 172 182 101 20
'FAHD2A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.383 (Fisher's exact test), Q value = 0.71

Table S1852.  Gene #166: 'FAHD2A MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
FAHD2A MUTATED 1 1 4
FAHD2A WILD-TYPE 86 79 96
'FAHD2A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0243 (Fisher's exact test), Q value = 0.16

Table S1853.  Gene #166: 'FAHD2A MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
FAHD2A MUTATED 0 1 6
FAHD2A WILD-TYPE 89 159 132

Figure S643.  Get High-res Image Gene #166: 'FAHD2A MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'FAHD2A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.187 (Fisher's exact test), Q value = 0.49

Table S1854.  Gene #166: 'FAHD2A MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
FAHD2A MUTATED 6 1 0
FAHD2A WILD-TYPE 176 132 72
'FAHD2A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.233 (Fisher's exact test), Q value = 0.55

Table S1855.  Gene #166: 'FAHD2A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
FAHD2A MUTATED 1 3 2 1
FAHD2A WILD-TYPE 111 93 90 185
'FAHD2A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00056 (Fisher's exact test), Q value = 0.017

Table S1856.  Gene #166: 'FAHD2A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
FAHD2A MUTATED 1 0 5 0 0 0 1
FAHD2A WILD-TYPE 59 50 44 40 63 125 98

Figure S644.  Get High-res Image Gene #166: 'FAHD2A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'FAHD2A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.322 (Fisher's exact test), Q value = 0.65

Table S1857.  Gene #166: 'FAHD2A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
FAHD2A MUTATED 4 0 0 3
FAHD2A WILD-TYPE 126 78 68 193
'FAHD2A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.386 (Fisher's exact test), Q value = 0.71

Table S1858.  Gene #166: 'FAHD2A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
FAHD2A MUTATED 1 1 0 0 3 1 1 0 0
FAHD2A WILD-TYPE 39 61 28 80 66 47 42 28 74
'FAHD2A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00071 (Fisher's exact test), Q value = 0.02

Table S1859.  Gene #166: 'FAHD2A MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
FAHD2A MUTATED 0 0 0 4
FAHD2A WILD-TYPE 33 31 27 15

Figure S645.  Get High-res Image Gene #166: 'FAHD2A MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'FAHD2A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.487 (Fisher's exact test), Q value = 0.81

Table S1860.  Gene #166: 'FAHD2A MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
FAHD2A MUTATED 1 0 2 1
FAHD2A WILD-TYPE 53 10 22 21
'KCNK1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.713 (Fisher's exact test), Q value = 0.98

Table S1861.  Gene #167: 'KCNK1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
KCNK1 MUTATED 4 6 1 0
KCNK1 WILD-TYPE 174 177 100 20
'KCNK1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.915 (Fisher's exact test), Q value = 1

Table S1862.  Gene #167: 'KCNK1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
KCNK1 MUTATED 3 2 4
KCNK1 WILD-TYPE 84 78 96
'KCNK1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.833 (Fisher's exact test), Q value = 1

Table S1863.  Gene #167: 'KCNK1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
KCNK1 MUTATED 1 4 4
KCNK1 WILD-TYPE 88 156 134
'KCNK1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1864.  Gene #167: 'KCNK1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
KCNK1 MUTATED 5 3 1
KCNK1 WILD-TYPE 177 130 71
'KCNK1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.301 (Fisher's exact test), Q value = 0.63

Table S1865.  Gene #167: 'KCNK1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
KCNK1 MUTATED 5 2 2 2
KCNK1 WILD-TYPE 107 94 90 184
'KCNK1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0949 (Fisher's exact test), Q value = 0.34

Table S1866.  Gene #167: 'KCNK1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
KCNK1 MUTATED 1 0 3 2 3 1 1
KCNK1 WILD-TYPE 59 50 46 38 60 124 98
'KCNK1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.163 (Fisher's exact test), Q value = 0.46

Table S1867.  Gene #167: 'KCNK1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
KCNK1 MUTATED 4 4 1 2
KCNK1 WILD-TYPE 126 74 67 194
'KCNK1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.701 (Fisher's exact test), Q value = 0.97

Table S1868.  Gene #167: 'KCNK1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
KCNK1 MUTATED 2 1 1 1 3 1 0 1 1
KCNK1 WILD-TYPE 38 61 27 79 66 47 43 27 73
'C15ORF52 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0174 (Fisher's exact test), Q value = 0.13

Table S1869.  Gene #168: 'C15ORF52 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
C15ORF52 MUTATED 3 0 0 0
C15ORF52 WILD-TYPE 43 58 64 43

Figure S646.  Get High-res Image Gene #168: 'C15ORF52 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'C15ORF52 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0137 (Fisher's exact test), Q value = 0.12

Table S1870.  Gene #168: 'C15ORF52 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
C15ORF52 MUTATED 3 0 0
C15ORF52 WILD-TYPE 48 83 77

Figure S647.  Get High-res Image Gene #168: 'C15ORF52 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'C15ORF52 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00014 (Fisher's exact test), Q value = 0.0066

Table S1871.  Gene #168: 'C15ORF52 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
C15ORF52 MUTATED 12 0 0 0
C15ORF52 WILD-TYPE 166 183 101 20

Figure S648.  Get High-res Image Gene #168: 'C15ORF52 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'C15ORF52 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0327 (Fisher's exact test), Q value = 0.18

Table S1872.  Gene #168: 'C15ORF52 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
C15ORF52 MUTATED 2 0 7
C15ORF52 WILD-TYPE 85 80 93

Figure S649.  Get High-res Image Gene #168: 'C15ORF52 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'C15ORF52 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.91 (Fisher's exact test), Q value = 1

Table S1873.  Gene #168: 'C15ORF52 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
C15ORF52 MUTATED 2 3 4
C15ORF52 WILD-TYPE 87 157 134
'C15ORF52 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.668 (Fisher's exact test), Q value = 0.95

Table S1874.  Gene #168: 'C15ORF52 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
C15ORF52 MUTATED 3 4 2
C15ORF52 WILD-TYPE 179 129 70
'C15ORF52 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0208 (Fisher's exact test), Q value = 0.15

Table S1875.  Gene #168: 'C15ORF52 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
C15ORF52 MUTATED 1 7 1 3
C15ORF52 WILD-TYPE 111 89 91 183

Figure S650.  Get High-res Image Gene #168: 'C15ORF52 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'C15ORF52 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00014 (Fisher's exact test), Q value = 0.0066

Table S1876.  Gene #168: 'C15ORF52 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
C15ORF52 MUTATED 1 1 7 0 0 0 3
C15ORF52 WILD-TYPE 59 49 42 40 63 125 96

Figure S651.  Get High-res Image Gene #168: 'C15ORF52 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'C15ORF52 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.501 (Fisher's exact test), Q value = 0.83

Table S1877.  Gene #168: 'C15ORF52 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
C15ORF52 MUTATED 5 2 0 5
C15ORF52 WILD-TYPE 125 76 68 191
'C15ORF52 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00463 (Fisher's exact test), Q value = 0.062

Table S1878.  Gene #168: 'C15ORF52 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
C15ORF52 MUTATED 2 0 0 1 7 1 0 1 0
C15ORF52 WILD-TYPE 38 62 28 79 62 47 43 27 74

Figure S652.  Get High-res Image Gene #168: 'C15ORF52 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'C15ORF52 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0964 (Fisher's exact test), Q value = 0.34

Table S1879.  Gene #168: 'C15ORF52 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
C15ORF52 MUTATED 2 0 0 2
C15ORF52 WILD-TYPE 31 31 27 17
'C15ORF52 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.672 (Fisher's exact test), Q value = 0.95

Table S1880.  Gene #168: 'C15ORF52 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
C15ORF52 MUTATED 2 0 2 0
C15ORF52 WILD-TYPE 52 10 22 22
'HAUS6 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.027 (Fisher's exact test), Q value = 0.17

Table S1881.  Gene #169: 'HAUS6 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
HAUS6 MUTATED 3 0 0 2
HAUS6 WILD-TYPE 43 58 64 41

Figure S653.  Get High-res Image Gene #169: 'HAUS6 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'HAUS6 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.253 (Fisher's exact test), Q value = 0.58

Table S1882.  Gene #169: 'HAUS6 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
HAUS6 MUTATED 3 1 1
HAUS6 WILD-TYPE 48 82 76
'HAUS6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0621 (Fisher's exact test), Q value = 0.27

Table S1883.  Gene #169: 'HAUS6 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
HAUS6 MUTATED 10 7 0 0
HAUS6 WILD-TYPE 168 176 101 20
'HAUS6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.936 (Fisher's exact test), Q value = 1

Table S1884.  Gene #169: 'HAUS6 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
HAUS6 MUTATED 4 3 5
HAUS6 WILD-TYPE 83 77 95
'HAUS6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.508 (Fisher's exact test), Q value = 0.83

Table S1885.  Gene #169: 'HAUS6 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
HAUS6 MUTATED 2 4 7
HAUS6 WILD-TYPE 87 156 131
'HAUS6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.81 (Fisher's exact test), Q value = 1

Table S1886.  Gene #169: 'HAUS6 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
HAUS6 MUTATED 5 5 3
HAUS6 WILD-TYPE 177 128 69
'HAUS6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.984 (Fisher's exact test), Q value = 1

Table S1887.  Gene #169: 'HAUS6 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
HAUS6 MUTATED 4 4 3 6
HAUS6 WILD-TYPE 108 92 89 180
'HAUS6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.756 (Fisher's exact test), Q value = 1

Table S1888.  Gene #169: 'HAUS6 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
HAUS6 MUTATED 3 2 3 2 1 3 3
HAUS6 WILD-TYPE 57 48 46 38 62 122 96
'HAUS6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.227 (Fisher's exact test), Q value = 0.55

Table S1889.  Gene #169: 'HAUS6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
HAUS6 MUTATED 6 0 3 8
HAUS6 WILD-TYPE 124 78 65 188
'HAUS6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.726 (Fisher's exact test), Q value = 0.99

Table S1890.  Gene #169: 'HAUS6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
HAUS6 MUTATED 1 2 2 1 4 3 1 1 2
HAUS6 WILD-TYPE 39 60 26 79 65 45 42 27 72
'HAUS6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.864 (Fisher's exact test), Q value = 1

Table S1891.  Gene #169: 'HAUS6 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
HAUS6 MUTATED 1 1 2 1
HAUS6 WILD-TYPE 32 30 25 18
'HAUS6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.82 (Fisher's exact test), Q value = 1

Table S1892.  Gene #169: 'HAUS6 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
HAUS6 MUTATED 2 0 1 2
HAUS6 WILD-TYPE 52 10 23 20
'TUBA4A MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.63 (Fisher's exact test), Q value = 0.93

Table S1893.  Gene #170: 'TUBA4A MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
TUBA4A MUTATED 1 1 0 1
TUBA4A WILD-TYPE 45 57 64 42
'TUBA4A MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1894.  Gene #170: 'TUBA4A MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
TUBA4A MUTATED 1 1 1
TUBA4A WILD-TYPE 50 82 76
'TUBA4A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0479 (Fisher's exact test), Q value = 0.23

Table S1895.  Gene #170: 'TUBA4A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
TUBA4A MUTATED 8 1 2 1
TUBA4A WILD-TYPE 170 182 99 19

Figure S654.  Get High-res Image Gene #170: 'TUBA4A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'TUBA4A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.583 (Fisher's exact test), Q value = 0.89

Table S1896.  Gene #170: 'TUBA4A MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
TUBA4A MUTATED 2 2 5
TUBA4A WILD-TYPE 85 78 95
'TUBA4A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.177 (Fisher's exact test), Q value = 0.48

Table S1897.  Gene #170: 'TUBA4A MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
TUBA4A MUTATED 0 3 5
TUBA4A WILD-TYPE 89 157 133
'TUBA4A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.565 (Fisher's exact test), Q value = 0.87

Table S1898.  Gene #170: 'TUBA4A MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
TUBA4A MUTATED 5 3 0
TUBA4A WILD-TYPE 177 130 72
'TUBA4A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.185 (Fisher's exact test), Q value = 0.49

Table S1899.  Gene #170: 'TUBA4A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
TUBA4A MUTATED 1 5 3 3
TUBA4A WILD-TYPE 111 91 89 183
'TUBA4A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0398 (Fisher's exact test), Q value = 0.21

Table S1900.  Gene #170: 'TUBA4A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
TUBA4A MUTATED 2 1 5 1 1 1 1
TUBA4A WILD-TYPE 58 49 44 39 62 124 98

Figure S655.  Get High-res Image Gene #170: 'TUBA4A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'TUBA4A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.167 (Fisher's exact test), Q value = 0.46

Table S1901.  Gene #170: 'TUBA4A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
TUBA4A MUTATED 7 1 1 3
TUBA4A WILD-TYPE 123 77 67 193
'TUBA4A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.426 (Fisher's exact test), Q value = 0.75

Table S1902.  Gene #170: 'TUBA4A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
TUBA4A MUTATED 2 4 0 1 3 1 0 0 1
TUBA4A WILD-TYPE 38 58 28 79 66 47 43 28 73
'TUBA4A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.361 (Fisher's exact test), Q value = 0.69

Table S1903.  Gene #170: 'TUBA4A MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
TUBA4A MUTATED 1 1 0 2
TUBA4A WILD-TYPE 32 30 27 17
'TUBA4A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.767 (Fisher's exact test), Q value = 1

Table S1904.  Gene #170: 'TUBA4A MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
TUBA4A MUTATED 3 0 0 1
TUBA4A WILD-TYPE 51 10 24 21
'MBD6 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.155 (Fisher's exact test), Q value = 0.44

Table S1905.  Gene #171: 'MBD6 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
MBD6 MUTATED 0 1 0 2
MBD6 WILD-TYPE 46 57 64 41
'MBD6 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.463 (Fisher's exact test), Q value = 0.79

Table S1906.  Gene #171: 'MBD6 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
MBD6 MUTATED 1 2 0
MBD6 WILD-TYPE 50 81 77
'MBD6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0038 (Fisher's exact test), Q value = 0.056

Table S1907.  Gene #171: 'MBD6 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
MBD6 MUTATED 13 3 0 0
MBD6 WILD-TYPE 165 180 101 20

Figure S656.  Get High-res Image Gene #171: 'MBD6 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'MBD6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.532 (Fisher's exact test), Q value = 0.85

Table S1908.  Gene #171: 'MBD6 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
MBD6 MUTATED 4 2 6
MBD6 WILD-TYPE 83 78 94
'MBD6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.609 (Fisher's exact test), Q value = 0.91

Table S1909.  Gene #171: 'MBD6 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
MBD6 MUTATED 2 5 7
MBD6 WILD-TYPE 87 155 131
'MBD6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.559 (Fisher's exact test), Q value = 0.87

Table S1910.  Gene #171: 'MBD6 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
MBD6 MUTATED 7 6 1
MBD6 WILD-TYPE 175 127 71
'MBD6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.243 (Fisher's exact test), Q value = 0.57

Table S1911.  Gene #171: 'MBD6 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
MBD6 MUTATED 2 5 5 4
MBD6 WILD-TYPE 110 91 87 182
'MBD6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S1912.  Gene #171: 'MBD6 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
MBD6 MUTATED 1 2 9 0 0 1 3
MBD6 WILD-TYPE 59 48 40 40 63 124 96

Figure S657.  Get High-res Image Gene #171: 'MBD6 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'MBD6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.249 (Fisher's exact test), Q value = 0.58

Table S1913.  Gene #171: 'MBD6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
MBD6 MUTATED 7 3 2 3
MBD6 WILD-TYPE 123 75 66 193
'MBD6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00458 (Fisher's exact test), Q value = 0.061

Table S1914.  Gene #171: 'MBD6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
MBD6 MUTATED 0 4 3 1 6 0 1 0 0
MBD6 WILD-TYPE 40 58 25 79 63 48 42 28 74

Figure S658.  Get High-res Image Gene #171: 'MBD6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'TFE3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.275 (Fisher's exact test), Q value = 0.6

Table S1915.  Gene #172: 'TFE3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
TFE3 MUTATED 2 0 1 0
TFE3 WILD-TYPE 44 58 63 43
'TFE3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.252 (Fisher's exact test), Q value = 0.58

Table S1916.  Gene #172: 'TFE3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
TFE3 MUTATED 2 1 0
TFE3 WILD-TYPE 49 82 77
'TFE3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00197 (Fisher's exact test), Q value = 0.037

Table S1917.  Gene #172: 'TFE3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
TFE3 MUTATED 10 0 1 0
TFE3 WILD-TYPE 168 183 100 20

Figure S659.  Get High-res Image Gene #172: 'TFE3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'TFE3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.112 (Fisher's exact test), Q value = 0.37

Table S1918.  Gene #172: 'TFE3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
TFE3 MUTATED 3 0 5
TFE3 WILD-TYPE 84 80 95
'TFE3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.319 (Fisher's exact test), Q value = 0.65

Table S1919.  Gene #172: 'TFE3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
TFE3 MUTATED 1 3 6
TFE3 WILD-TYPE 88 157 132
'TFE3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.838 (Fisher's exact test), Q value = 1

Table S1920.  Gene #172: 'TFE3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
TFE3 MUTATED 4 4 2
TFE3 WILD-TYPE 178 129 70
'TFE3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0224 (Fisher's exact test), Q value = 0.15

Table S1921.  Gene #172: 'TFE3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
TFE3 MUTATED 0 6 2 3
TFE3 WILD-TYPE 112 90 90 183

Figure S660.  Get High-res Image Gene #172: 'TFE3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'TFE3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00011 (Fisher's exact test), Q value = 0.0056

Table S1922.  Gene #172: 'TFE3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
TFE3 MUTATED 0 0 7 1 0 1 2
TFE3 WILD-TYPE 60 50 42 39 63 124 97

Figure S661.  Get High-res Image Gene #172: 'TFE3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'TFE3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.638 (Fisher's exact test), Q value = 0.93

Table S1923.  Gene #172: 'TFE3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
TFE3 MUTATED 4 2 0 5
TFE3 WILD-TYPE 126 76 68 191
'TFE3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0238 (Fisher's exact test), Q value = 0.16

Table S1924.  Gene #172: 'TFE3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
TFE3 MUTATED 2 2 0 1 6 0 0 0 0
TFE3 WILD-TYPE 38 60 28 79 63 48 43 28 74

Figure S662.  Get High-res Image Gene #172: 'TFE3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'NCAPD2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0053 (Fisher's exact test), Q value = 0.066

Table S1925.  Gene #173: 'NCAPD2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
NCAPD2 MUTATED 2 0 0 4
NCAPD2 WILD-TYPE 44 58 64 39

Figure S663.  Get High-res Image Gene #173: 'NCAPD2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'NCAPD2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.88 (Fisher's exact test), Q value = 1

Table S1926.  Gene #173: 'NCAPD2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
NCAPD2 MUTATED 2 2 2
NCAPD2 WILD-TYPE 49 81 75
'NCAPD2 MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S1927.  Gene #173: 'NCAPD2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
NCAPD2 MUTATED 19 0 2 0
NCAPD2 WILD-TYPE 159 183 99 20

Figure S664.  Get High-res Image Gene #173: 'NCAPD2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'NCAPD2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0093 (Fisher's exact test), Q value = 0.091

Table S1928.  Gene #173: 'NCAPD2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
NCAPD2 MUTATED 8 0 7
NCAPD2 WILD-TYPE 79 80 93

Figure S665.  Get High-res Image Gene #173: 'NCAPD2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'NCAPD2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00859 (Fisher's exact test), Q value = 0.086

Table S1929.  Gene #173: 'NCAPD2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
NCAPD2 MUTATED 1 4 12
NCAPD2 WILD-TYPE 88 156 126

Figure S666.  Get High-res Image Gene #173: 'NCAPD2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'NCAPD2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0234 (Fisher's exact test), Q value = 0.16

Table S1930.  Gene #173: 'NCAPD2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
NCAPD2 MUTATED 13 4 0
NCAPD2 WILD-TYPE 169 129 72

Figure S667.  Get High-res Image Gene #173: 'NCAPD2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'NCAPD2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00589 (Fisher's exact test), Q value = 0.07

Table S1931.  Gene #173: 'NCAPD2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
NCAPD2 MUTATED 0 8 6 7
NCAPD2 WILD-TYPE 112 88 86 179

Figure S668.  Get High-res Image Gene #173: 'NCAPD2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'NCAPD2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 2e-05 (Fisher's exact test), Q value = 0.0017

Table S1932.  Gene #173: 'NCAPD2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
NCAPD2 MUTATED 0 5 9 0 0 2 5
NCAPD2 WILD-TYPE 60 45 40 40 63 123 94

Figure S669.  Get High-res Image Gene #173: 'NCAPD2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'NCAPD2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.68 (Fisher's exact test), Q value = 0.96

Table S1933.  Gene #173: 'NCAPD2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
NCAPD2 MUTATED 7 3 1 8
NCAPD2 WILD-TYPE 123 75 67 188
'NCAPD2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00684 (Fisher's exact test), Q value = 0.076

Table S1934.  Gene #173: 'NCAPD2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
NCAPD2 MUTATED 0 4 5 1 5 0 2 0 2
NCAPD2 WILD-TYPE 40 58 23 79 64 48 41 28 72

Figure S670.  Get High-res Image Gene #173: 'NCAPD2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'NCAPD2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.071 (Fisher's exact test), Q value = 0.29

Table S1935.  Gene #173: 'NCAPD2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
NCAPD2 MUTATED 1 0 1 3
NCAPD2 WILD-TYPE 32 31 26 16
'NCAPD2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.576 (Fisher's exact test), Q value = 0.88

Table S1936.  Gene #173: 'NCAPD2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
NCAPD2 MUTATED 3 0 2 0
NCAPD2 WILD-TYPE 51 10 22 22
'NCOA6 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.025 (Fisher's exact test), Q value = 0.16

Table S1937.  Gene #174: 'NCOA6 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
NCOA6 MUTATED 3 1 0 4
NCOA6 WILD-TYPE 43 57 64 39

Figure S671.  Get High-res Image Gene #174: 'NCOA6 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'NCOA6 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0623 (Fisher's exact test), Q value = 0.27

Table S1938.  Gene #174: 'NCOA6 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
NCOA6 MUTATED 5 2 1
NCOA6 WILD-TYPE 46 81 76
'NCOA6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00247 (Fisher's exact test), Q value = 0.043

Table S1939.  Gene #174: 'NCOA6 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
NCOA6 MUTATED 19 3 6 1
NCOA6 WILD-TYPE 159 180 95 19

Figure S672.  Get High-res Image Gene #174: 'NCOA6 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'NCOA6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.244 (Fisher's exact test), Q value = 0.57

Table S1940.  Gene #174: 'NCOA6 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
NCOA6 MUTATED 8 3 10
NCOA6 WILD-TYPE 79 77 90
'NCOA6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.372 (Fisher's exact test), Q value = 0.7

Table S1941.  Gene #174: 'NCOA6 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
NCOA6 MUTATED 3 10 11
NCOA6 WILD-TYPE 86 150 127
'NCOA6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.366 (Fisher's exact test), Q value = 0.69

Table S1942.  Gene #174: 'NCOA6 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
NCOA6 MUTATED 15 6 3
NCOA6 WILD-TYPE 167 127 69
'NCOA6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.176 (Fisher's exact test), Q value = 0.48

Table S1943.  Gene #174: 'NCOA6 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
NCOA6 MUTATED 5 6 10 8
NCOA6 WILD-TYPE 107 90 82 178
'NCOA6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0016 (Fisher's exact test), Q value = 0.033

Table S1944.  Gene #174: 'NCOA6 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
NCOA6 MUTATED 5 2 9 1 4 1 7
NCOA6 WILD-TYPE 55 48 40 39 59 124 92

Figure S673.  Get High-res Image Gene #174: 'NCOA6 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'NCOA6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.55 (Fisher's exact test), Q value = 0.87

Table S1945.  Gene #174: 'NCOA6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
NCOA6 MUTATED 10 6 3 9
NCOA6 WILD-TYPE 120 72 65 187
'NCOA6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.034 (Fisher's exact test), Q value = 0.19

Table S1946.  Gene #174: 'NCOA6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
NCOA6 MUTATED 1 6 2 5 10 1 2 0 1
NCOA6 WILD-TYPE 39 56 26 75 59 47 41 28 73

Figure S674.  Get High-res Image Gene #174: 'NCOA6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'NCOA6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.468 (Fisher's exact test), Q value = 0.79

Table S1947.  Gene #174: 'NCOA6 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
NCOA6 MUTATED 3 1 2 3
NCOA6 WILD-TYPE 30 30 25 16
'NCOA6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.521 (Fisher's exact test), Q value = 0.84

Table S1948.  Gene #174: 'NCOA6 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
NCOA6 MUTATED 7 0 1 1
NCOA6 WILD-TYPE 47 10 23 21
'SVIL MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0605 (Fisher's exact test), Q value = 0.27

Table S1949.  Gene #175: 'SVIL MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
SVIL MUTATED 3 1 0 3
SVIL WILD-TYPE 43 57 64 40
'SVIL MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.125 (Fisher's exact test), Q value = 0.39

Table S1950.  Gene #175: 'SVIL MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
SVIL MUTATED 4 2 1
SVIL WILD-TYPE 47 81 76
'SVIL MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S1951.  Gene #175: 'SVIL MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
SVIL MUTATED 30 0 4 0
SVIL WILD-TYPE 148 183 97 20

Figure S675.  Get High-res Image Gene #175: 'SVIL MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'SVIL MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00421 (Fisher's exact test), Q value = 0.059

Table S1952.  Gene #175: 'SVIL MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
SVIL MUTATED 6 3 18
SVIL WILD-TYPE 81 77 82

Figure S676.  Get High-res Image Gene #175: 'SVIL MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'SVIL MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0858 (Fisher's exact test), Q value = 0.32

Table S1953.  Gene #175: 'SVIL MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
SVIL MUTATED 5 9 17
SVIL WILD-TYPE 84 151 121
'SVIL MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.497 (Fisher's exact test), Q value = 0.82

Table S1954.  Gene #175: 'SVIL MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
SVIL MUTATED 18 9 4
SVIL WILD-TYPE 164 124 68
'SVIL MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00446 (Fisher's exact test), Q value = 0.061

Table S1955.  Gene #175: 'SVIL MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
SVIL MUTATED 3 12 11 8
SVIL WILD-TYPE 109 84 81 178

Figure S677.  Get High-res Image Gene #175: 'SVIL MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'SVIL MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S1956.  Gene #175: 'SVIL MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
SVIL MUTATED 3 4 18 1 1 1 6
SVIL WILD-TYPE 57 46 31 39 62 124 93

Figure S678.  Get High-res Image Gene #175: 'SVIL MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'SVIL MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00315 (Fisher's exact test), Q value = 0.05

Table S1957.  Gene #175: 'SVIL MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
SVIL MUTATED 17 4 0 13
SVIL WILD-TYPE 113 74 68 183

Figure S679.  Get High-res Image Gene #175: 'SVIL MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'SVIL MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00035 (Fisher's exact test), Q value = 0.012

Table S1958.  Gene #175: 'SVIL MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
SVIL MUTATED 5 7 1 6 13 0 1 0 1
SVIL WILD-TYPE 35 55 27 74 56 48 42 28 73

Figure S680.  Get High-res Image Gene #175: 'SVIL MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'SVIL MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S1959.  Gene #175: 'SVIL MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
SVIL MUTATED 2 1 0 9
SVIL WILD-TYPE 31 30 27 10

Figure S681.  Get High-res Image Gene #175: 'SVIL MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'SVIL MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.235 (Fisher's exact test), Q value = 0.56

Table S1960.  Gene #175: 'SVIL MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
SVIL MUTATED 7 1 4 0
SVIL WILD-TYPE 47 9 20 22
'XYLT2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00025 (Fisher's exact test), Q value = 0.0096

Table S1961.  Gene #176: 'XYLT2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
XYLT2 MUTATED 13 0 1 0
XYLT2 WILD-TYPE 165 183 100 20

Figure S682.  Get High-res Image Gene #176: 'XYLT2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'XYLT2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0173 (Fisher's exact test), Q value = 0.13

Table S1962.  Gene #176: 'XYLT2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
XYLT2 MUTATED 2 1 10
XYLT2 WILD-TYPE 85 79 90

Figure S683.  Get High-res Image Gene #176: 'XYLT2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'XYLT2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.297 (Fisher's exact test), Q value = 0.63

Table S1963.  Gene #176: 'XYLT2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
XYLT2 MUTATED 1 5 7
XYLT2 WILD-TYPE 88 155 131
'XYLT2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.203 (Fisher's exact test), Q value = 0.51

Table S1964.  Gene #176: 'XYLT2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
XYLT2 MUTATED 7 6 0
XYLT2 WILD-TYPE 175 127 72
'XYLT2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 5e-05 (Fisher's exact test), Q value = 0.0032

Table S1965.  Gene #176: 'XYLT2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
XYLT2 MUTATED 0 9 4 1
XYLT2 WILD-TYPE 112 87 88 185

Figure S684.  Get High-res Image Gene #176: 'XYLT2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'XYLT2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S1966.  Gene #176: 'XYLT2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
XYLT2 MUTATED 0 1 10 0 1 0 2
XYLT2 WILD-TYPE 60 49 39 40 62 125 97

Figure S685.  Get High-res Image Gene #176: 'XYLT2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'XYLT2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0262 (Fisher's exact test), Q value = 0.16

Table S1967.  Gene #176: 'XYLT2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
XYLT2 MUTATED 9 1 0 4
XYLT2 WILD-TYPE 121 77 68 192

Figure S686.  Get High-res Image Gene #176: 'XYLT2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'XYLT2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0494 (Fisher's exact test), Q value = 0.24

Table S1968.  Gene #176: 'XYLT2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
XYLT2 MUTATED 2 3 0 0 6 0 1 1 1
XYLT2 WILD-TYPE 38 59 28 80 63 48 42 27 73

Figure S687.  Get High-res Image Gene #176: 'XYLT2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'XYLT2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0242 (Fisher's exact test), Q value = 0.16

Table S1969.  Gene #176: 'XYLT2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
XYLT2 MUTATED 1 0 0 3
XYLT2 WILD-TYPE 32 31 27 16

Figure S688.  Get High-res Image Gene #176: 'XYLT2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'XYLT2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.87 (Fisher's exact test), Q value = 1

Table S1970.  Gene #176: 'XYLT2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
XYLT2 MUTATED 3 0 1 0
XYLT2 WILD-TYPE 51 10 23 22
'ZNF789 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.324 (Fisher's exact test), Q value = 0.65

Table S1971.  Gene #177: 'ZNF789 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ZNF789 MUTATED 5 1 1 0
ZNF789 WILD-TYPE 173 182 100 20
'ZNF789 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.53 (Fisher's exact test), Q value = 0.85

Table S1972.  Gene #177: 'ZNF789 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ZNF789 MUTATED 3 1 1
ZNF789 WILD-TYPE 84 79 99
'ZNF789 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00514 (Fisher's exact test), Q value = 0.065

Table S1973.  Gene #177: 'ZNF789 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ZNF789 MUTATED 0 0 6
ZNF789 WILD-TYPE 89 160 132

Figure S689.  Get High-res Image Gene #177: 'ZNF789 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'ZNF789 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.582 (Fisher's exact test), Q value = 0.89

Table S1974.  Gene #177: 'ZNF789 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ZNF789 MUTATED 3 3 0
ZNF789 WILD-TYPE 179 130 72
'ZNF789 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.761 (Fisher's exact test), Q value = 1

Table S1975.  Gene #177: 'ZNF789 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ZNF789 MUTATED 1 2 2 2
ZNF789 WILD-TYPE 111 94 90 184
'ZNF789 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.157 (Fisher's exact test), Q value = 0.45

Table S1976.  Gene #177: 'ZNF789 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ZNF789 MUTATED 0 2 1 0 2 0 2
ZNF789 WILD-TYPE 60 48 48 40 61 125 97
'ZNF789 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.941 (Fisher's exact test), Q value = 1

Table S1977.  Gene #177: 'ZNF789 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ZNF789 MUTATED 2 1 1 2
ZNF789 WILD-TYPE 128 77 67 194
'ZNF789 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.781 (Fisher's exact test), Q value = 1

Table S1978.  Gene #177: 'ZNF789 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ZNF789 MUTATED 1 1 0 0 2 0 1 0 1
ZNF789 WILD-TYPE 39 61 28 80 67 48 42 28 73
'DDX43 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.273 (Fisher's exact test), Q value = 0.6

Table S1979.  Gene #178: 'DDX43 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
DDX43 MUTATED 2 0 1 0
DDX43 WILD-TYPE 44 58 63 43
'DDX43 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.463 (Fisher's exact test), Q value = 0.79

Table S1980.  Gene #178: 'DDX43 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
DDX43 MUTATED 1 2 0
DDX43 WILD-TYPE 50 81 77
'DDX43 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.359 (Fisher's exact test), Q value = 0.69

Table S1981.  Gene #178: 'DDX43 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
DDX43 MUTATED 8 3 2 0
DDX43 WILD-TYPE 170 180 99 20
'DDX43 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.339 (Fisher's exact test), Q value = 0.67

Table S1982.  Gene #178: 'DDX43 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
DDX43 MUTATED 6 2 3
DDX43 WILD-TYPE 81 78 97
'DDX43 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0549 (Fisher's exact test), Q value = 0.25

Table S1983.  Gene #178: 'DDX43 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
DDX43 MUTATED 1 3 9
DDX43 WILD-TYPE 88 157 129
'DDX43 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.869 (Fisher's exact test), Q value = 1

Table S1984.  Gene #178: 'DDX43 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
DDX43 MUTATED 6 4 3
DDX43 WILD-TYPE 176 129 69
'DDX43 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.216 (Fisher's exact test), Q value = 0.53

Table S1985.  Gene #178: 'DDX43 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
DDX43 MUTATED 1 5 4 4
DDX43 WILD-TYPE 111 91 88 182
'DDX43 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.133 (Fisher's exact test), Q value = 0.41

Table S1986.  Gene #178: 'DDX43 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
DDX43 MUTATED 0 3 4 1 2 2 2
DDX43 WILD-TYPE 60 47 45 39 61 123 97
'DDX43 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.872 (Fisher's exact test), Q value = 1

Table S1987.  Gene #178: 'DDX43 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
DDX43 MUTATED 5 2 1 6
DDX43 WILD-TYPE 125 76 67 190
'DDX43 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.503 (Fisher's exact test), Q value = 0.83

Table S1988.  Gene #178: 'DDX43 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
DDX43 MUTATED 2 2 0 1 4 0 1 0 4
DDX43 WILD-TYPE 38 60 28 79 65 48 42 28 70
'DDX43 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0271 (Fisher's exact test), Q value = 0.17

Table S1989.  Gene #178: 'DDX43 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
DDX43 MUTATED 1 2 0 4
DDX43 WILD-TYPE 32 29 27 15

Figure S690.  Get High-res Image Gene #178: 'DDX43 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'DDX43 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.545 (Fisher's exact test), Q value = 0.86

Table S1990.  Gene #178: 'DDX43 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
DDX43 MUTATED 5 0 2 0
DDX43 WILD-TYPE 49 10 22 22
'CEP135 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00044 (Fisher's exact test), Q value = 0.014

Table S1991.  Gene #179: 'CEP135 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
CEP135 MUTATED 6 0 0 2
CEP135 WILD-TYPE 40 58 64 41

Figure S691.  Get High-res Image Gene #179: 'CEP135 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'CEP135 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0481 (Fisher's exact test), Q value = 0.23

Table S1992.  Gene #179: 'CEP135 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
CEP135 MUTATED 5 1 2
CEP135 WILD-TYPE 46 82 75

Figure S692.  Get High-res Image Gene #179: 'CEP135 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'CEP135 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.108 (Fisher's exact test), Q value = 0.36

Table S1993.  Gene #179: 'CEP135 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
CEP135 MUTATED 15 6 3 1
CEP135 WILD-TYPE 163 177 98 19
'CEP135 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.704 (Fisher's exact test), Q value = 0.98

Table S1994.  Gene #179: 'CEP135 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
CEP135 MUTATED 4 6 7
CEP135 WILD-TYPE 83 74 93
'CEP135 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.819 (Fisher's exact test), Q value = 1

Table S1995.  Gene #179: 'CEP135 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
CEP135 MUTATED 4 9 9
CEP135 WILD-TYPE 85 151 129
'CEP135 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.919 (Fisher's exact test), Q value = 1

Table S1996.  Gene #179: 'CEP135 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
CEP135 MUTATED 11 8 3
CEP135 WILD-TYPE 171 125 69
'CEP135 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.482 (Fisher's exact test), Q value = 0.81

Table S1997.  Gene #179: 'CEP135 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
CEP135 MUTATED 7 3 7 8
CEP135 WILD-TYPE 105 93 85 178
'CEP135 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0493 (Fisher's exact test), Q value = 0.24

Table S1998.  Gene #179: 'CEP135 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
CEP135 MUTATED 5 1 6 1 5 2 5
CEP135 WILD-TYPE 55 49 43 39 58 123 94

Figure S693.  Get High-res Image Gene #179: 'CEP135 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CEP135 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.712 (Fisher's exact test), Q value = 0.98

Table S1999.  Gene #179: 'CEP135 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
CEP135 MUTATED 6 4 5 8
CEP135 WILD-TYPE 124 74 63 188
'CEP135 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0232 (Fisher's exact test), Q value = 0.15

Table S2000.  Gene #179: 'CEP135 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
CEP135 MUTATED 1 3 1 1 7 3 6 0 1
CEP135 WILD-TYPE 39 59 27 79 62 45 37 28 73

Figure S694.  Get High-res Image Gene #179: 'CEP135 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'CEP135 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0692 (Fisher's exact test), Q value = 0.28

Table S2001.  Gene #179: 'CEP135 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
CEP135 MUTATED 4 0 1 3
CEP135 WILD-TYPE 29 31 26 16
'CEP135 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.264 (Fisher's exact test), Q value = 0.59

Table S2002.  Gene #179: 'CEP135 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
CEP135 MUTATED 5 0 0 3
CEP135 WILD-TYPE 49 10 24 19
'IL12RB2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00539 (Fisher's exact test), Q value = 0.066

Table S2003.  Gene #180: 'IL12RB2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
IL12RB2 MUTATED 2 0 0 4
IL12RB2 WILD-TYPE 44 58 64 39

Figure S695.  Get High-res Image Gene #180: 'IL12RB2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'IL12RB2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.88 (Fisher's exact test), Q value = 1

Table S2004.  Gene #180: 'IL12RB2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
IL12RB2 MUTATED 2 2 2
IL12RB2 WILD-TYPE 49 81 75
'IL12RB2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00118 (Fisher's exact test), Q value = 0.027

Table S2005.  Gene #180: 'IL12RB2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
IL12RB2 MUTATED 15 2 1 1
IL12RB2 WILD-TYPE 163 181 100 19

Figure S696.  Get High-res Image Gene #180: 'IL12RB2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'IL12RB2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.432 (Fisher's exact test), Q value = 0.76

Table S2006.  Gene #180: 'IL12RB2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
IL12RB2 MUTATED 6 2 5
IL12RB2 WILD-TYPE 81 78 95
'IL12RB2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0321 (Fisher's exact test), Q value = 0.18

Table S2007.  Gene #180: 'IL12RB2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
IL12RB2 MUTATED 0 6 9
IL12RB2 WILD-TYPE 89 154 129

Figure S697.  Get High-res Image Gene #180: 'IL12RB2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'IL12RB2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.508 (Fisher's exact test), Q value = 0.83

Table S2008.  Gene #180: 'IL12RB2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
IL12RB2 MUTATED 9 5 1
IL12RB2 WILD-TYPE 173 128 71
'IL12RB2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.155 (Fisher's exact test), Q value = 0.44

Table S2009.  Gene #180: 'IL12RB2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
IL12RB2 MUTATED 2 6 6 5
IL12RB2 WILD-TYPE 110 90 86 181
'IL12RB2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00624 (Fisher's exact test), Q value = 0.072

Table S2010.  Gene #180: 'IL12RB2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
IL12RB2 MUTATED 3 0 6 3 1 1 5
IL12RB2 WILD-TYPE 57 50 43 37 62 124 94

Figure S698.  Get High-res Image Gene #180: 'IL12RB2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'IL12RB2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.794 (Fisher's exact test), Q value = 1

Table S2011.  Gene #180: 'IL12RB2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
IL12RB2 MUTATED 7 2 2 7
IL12RB2 WILD-TYPE 123 76 66 189
'IL12RB2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0655 (Fisher's exact test), Q value = 0.28

Table S2012.  Gene #180: 'IL12RB2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
IL12RB2 MUTATED 3 4 2 2 5 0 2 0 0
IL12RB2 WILD-TYPE 37 58 26 78 64 48 41 28 74
'IL12RB2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00028 (Fisher's exact test), Q value = 0.01

Table S2013.  Gene #180: 'IL12RB2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
IL12RB2 MUTATED 0 0 1 5
IL12RB2 WILD-TYPE 33 31 26 14

Figure S699.  Get High-res Image Gene #180: 'IL12RB2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'IL12RB2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.921 (Fisher's exact test), Q value = 1

Table S2014.  Gene #180: 'IL12RB2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
IL12RB2 MUTATED 3 0 2 1
IL12RB2 WILD-TYPE 51 10 22 21
'EHBP1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.106 (Fisher's exact test), Q value = 0.36

Table S2015.  Gene #181: 'EHBP1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
EHBP1 MUTATED 3 1 0 2
EHBP1 WILD-TYPE 43 57 64 41
'EHBP1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.336 (Fisher's exact test), Q value = 0.66

Table S2016.  Gene #181: 'EHBP1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
EHBP1 MUTATED 3 2 1
EHBP1 WILD-TYPE 48 81 76
'EHBP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.38 (Fisher's exact test), Q value = 0.71

Table S2017.  Gene #181: 'EHBP1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
EHBP1 MUTATED 13 9 3 0
EHBP1 WILD-TYPE 165 174 98 20
'EHBP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.202 (Fisher's exact test), Q value = 0.51

Table S2018.  Gene #181: 'EHBP1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
EHBP1 MUTATED 3 6 10
EHBP1 WILD-TYPE 84 74 90
'EHBP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.959 (Fisher's exact test), Q value = 1

Table S2019.  Gene #181: 'EHBP1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
EHBP1 MUTATED 5 8 8
EHBP1 WILD-TYPE 84 152 130
'EHBP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.556 (Fisher's exact test), Q value = 0.87

Table S2020.  Gene #181: 'EHBP1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
EHBP1 MUTATED 12 7 2
EHBP1 WILD-TYPE 170 126 70
'EHBP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.437 (Fisher's exact test), Q value = 0.76

Table S2021.  Gene #181: 'EHBP1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
EHBP1 MUTATED 7 6 6 6
EHBP1 WILD-TYPE 105 90 86 180
'EHBP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0127 (Fisher's exact test), Q value = 0.11

Table S2022.  Gene #181: 'EHBP1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
EHBP1 MUTATED 6 5 6 1 2 2 3
EHBP1 WILD-TYPE 54 45 43 39 61 123 96

Figure S700.  Get High-res Image Gene #181: 'EHBP1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'EHBP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0774 (Fisher's exact test), Q value = 0.3

Table S2023.  Gene #181: 'EHBP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
EHBP1 MUTATED 13 3 2 7
EHBP1 WILD-TYPE 117 75 66 189
'EHBP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.126 (Fisher's exact test), Q value = 0.39

Table S2024.  Gene #181: 'EHBP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
EHBP1 MUTATED 2 3 1 6 9 1 2 0 1
EHBP1 WILD-TYPE 38 59 27 74 60 47 41 28 73
'EHBP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.391 (Fisher's exact test), Q value = 0.72

Table S2025.  Gene #181: 'EHBP1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
EHBP1 MUTATED 2 1 0 2
EHBP1 WILD-TYPE 31 30 27 17
'EHBP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2026.  Gene #181: 'EHBP1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
EHBP1 MUTATED 3 0 1 1
EHBP1 WILD-TYPE 51 10 23 21
'USP7 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00568 (Fisher's exact test), Q value = 0.068

Table S2027.  Gene #182: 'USP7 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
USP7 MUTATED 2 0 0 4
USP7 WILD-TYPE 44 58 64 39

Figure S701.  Get High-res Image Gene #182: 'USP7 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'USP7 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.337 (Fisher's exact test), Q value = 0.66

Table S2028.  Gene #182: 'USP7 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
USP7 MUTATED 3 2 1
USP7 WILD-TYPE 48 81 76
'USP7 MUTATION STATUS' versus 'CN_CNMF'

P value = 4e-05 (Fisher's exact test), Q value = 0.0027

Table S2029.  Gene #182: 'USP7 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
USP7 MUTATED 21 2 3 0
USP7 WILD-TYPE 157 181 98 20

Figure S702.  Get High-res Image Gene #182: 'USP7 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'USP7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.176 (Fisher's exact test), Q value = 0.48

Table S2030.  Gene #182: 'USP7 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
USP7 MUTATED 8 2 8
USP7 WILD-TYPE 79 78 92
'USP7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.209 (Fisher's exact test), Q value = 0.52

Table S2031.  Gene #182: 'USP7 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
USP7 MUTATED 2 9 11
USP7 WILD-TYPE 87 151 127
'USP7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.112 (Fisher's exact test), Q value = 0.37

Table S2032.  Gene #182: 'USP7 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
USP7 MUTATED 10 11 1
USP7 WILD-TYPE 172 122 71
'USP7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0423 (Fisher's exact test), Q value = 0.22

Table S2033.  Gene #182: 'USP7 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
USP7 MUTATED 2 10 6 8
USP7 WILD-TYPE 110 86 86 178

Figure S703.  Get High-res Image Gene #182: 'USP7 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'USP7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00041 (Fisher's exact test), Q value = 0.013

Table S2034.  Gene #182: 'USP7 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
USP7 MUTATED 2 5 9 2 1 1 6
USP7 WILD-TYPE 58 45 40 38 62 124 93

Figure S704.  Get High-res Image Gene #182: 'USP7 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'USP7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.269 (Fisher's exact test), Q value = 0.59

Table S2035.  Gene #182: 'USP7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
USP7 MUTATED 11 2 2 10
USP7 WILD-TYPE 119 76 66 186
'USP7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0216 (Fisher's exact test), Q value = 0.15

Table S2036.  Gene #182: 'USP7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
USP7 MUTATED 2 4 4 1 8 0 3 1 2
USP7 WILD-TYPE 38 58 24 79 61 48 40 27 72

Figure S705.  Get High-res Image Gene #182: 'USP7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'USP7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00798 (Fisher's exact test), Q value = 0.084

Table S2037.  Gene #182: 'USP7 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
USP7 MUTATED 0 0 1 3
USP7 WILD-TYPE 33 31 26 16

Figure S706.  Get High-res Image Gene #182: 'USP7 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'USP7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.127 (Fisher's exact test), Q value = 0.4

Table S2038.  Gene #182: 'USP7 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
USP7 MUTATED 1 0 3 0
USP7 WILD-TYPE 53 10 21 22
'IVL MUTATION STATUS' versus 'MRNA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2039.  Gene #183: 'IVL MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
IVL MUTATED 1 1 1 0
IVL WILD-TYPE 45 57 63 43
'IVL MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2040.  Gene #183: 'IVL MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
IVL MUTATED 1 1 1
IVL WILD-TYPE 50 82 76
'IVL MUTATION STATUS' versus 'CN_CNMF'

P value = 0.139 (Fisher's exact test), Q value = 0.41

Table S2041.  Gene #183: 'IVL MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
IVL MUTATED 8 9 1 2
IVL WILD-TYPE 170 174 100 18
'IVL MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.4 (Fisher's exact test), Q value = 0.73

Table S2042.  Gene #183: 'IVL MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
IVL MUTATED 3 6 8
IVL WILD-TYPE 84 74 92
'IVL MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.838 (Fisher's exact test), Q value = 1

Table S2043.  Gene #183: 'IVL MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
IVL MUTATED 4 5 6
IVL WILD-TYPE 85 155 132
'IVL MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.507 (Fisher's exact test), Q value = 0.83

Table S2044.  Gene #183: 'IVL MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
IVL MUTATED 9 5 1
IVL WILD-TYPE 173 128 71
'IVL MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0192 (Fisher's exact test), Q value = 0.14

Table S2045.  Gene #183: 'IVL MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
IVL MUTATED 9 2 6 3
IVL WILD-TYPE 103 94 86 183

Figure S707.  Get High-res Image Gene #183: 'IVL MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'IVL MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0891 (Fisher's exact test), Q value = 0.32

Table S2046.  Gene #183: 'IVL MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
IVL MUTATED 3 1 3 3 6 2 2
IVL WILD-TYPE 57 49 46 37 57 123 97
'IVL MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.13 (Fisher's exact test), Q value = 0.4

Table S2047.  Gene #183: 'IVL MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
IVL MUTATED 7 6 3 4
IVL WILD-TYPE 123 72 65 192
'IVL MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.75 (Fisher's exact test), Q value = 1

Table S2048.  Gene #183: 'IVL MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
IVL MUTATED 2 5 2 2 3 2 2 0 2
IVL WILD-TYPE 38 57 26 78 66 46 41 28 72
'IVL MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.628 (Fisher's exact test), Q value = 0.92

Table S2049.  Gene #183: 'IVL MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
IVL MUTATED 2 2 0 1
IVL WILD-TYPE 31 29 27 18
'IVL MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0764 (Fisher's exact test), Q value = 0.3

Table S2050.  Gene #183: 'IVL MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
IVL MUTATED 3 2 0 0
IVL WILD-TYPE 51 8 24 22
'IDH2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.106 (Fisher's exact test), Q value = 0.36

Table S2051.  Gene #184: 'IDH2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
IDH2 MUTATED 3 1 0 2
IDH2 WILD-TYPE 43 57 64 41
'IDH2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0033 (Fisher's exact test), Q value = 0.052

Table S2052.  Gene #184: 'IDH2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
IDH2 MUTATED 5 1 0
IDH2 WILD-TYPE 46 82 77

Figure S708.  Get High-res Image Gene #184: 'IDH2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'IDH2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.4 (Fisher's exact test), Q value = 0.73

Table S2053.  Gene #184: 'IDH2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
IDH2 MUTATED 9 4 4 1
IDH2 WILD-TYPE 169 179 97 19
'IDH2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.723 (Fisher's exact test), Q value = 0.99

Table S2054.  Gene #184: 'IDH2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
IDH2 MUTATED 3 2 5
IDH2 WILD-TYPE 84 78 95
'IDH2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.645 (Fisher's exact test), Q value = 0.93

Table S2055.  Gene #184: 'IDH2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
IDH2 MUTATED 4 4 6
IDH2 WILD-TYPE 85 156 132
'IDH2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.937 (Fisher's exact test), Q value = 1

Table S2056.  Gene #184: 'IDH2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
IDH2 MUTATED 6 5 3
IDH2 WILD-TYPE 176 128 69
'IDH2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.535 (Fisher's exact test), Q value = 0.85

Table S2057.  Gene #184: 'IDH2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
IDH2 MUTATED 4 6 3 5
IDH2 WILD-TYPE 108 90 89 181
'IDH2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0882 (Fisher's exact test), Q value = 0.32

Table S2058.  Gene #184: 'IDH2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
IDH2 MUTATED 2 3 4 0 2 1 6
IDH2 WILD-TYPE 58 47 45 40 61 124 93
'IDH2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0651 (Fisher's exact test), Q value = 0.28

Table S2059.  Gene #184: 'IDH2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
IDH2 MUTATED 9 0 2 7
IDH2 WILD-TYPE 121 78 66 189
'IDH2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.124 (Fisher's exact test), Q value = 0.39

Table S2060.  Gene #184: 'IDH2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
IDH2 MUTATED 3 1 0 4 6 0 1 2 1
IDH2 WILD-TYPE 37 61 28 76 63 48 42 26 73
'FGFR2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0653 (Fisher's exact test), Q value = 0.28

Table S2061.  Gene #185: 'FGFR2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
FGFR2 MUTATED 1 0 0 2
FGFR2 WILD-TYPE 45 58 64 41
'FGFR2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.348 (Fisher's exact test), Q value = 0.68

Table S2062.  Gene #185: 'FGFR2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
FGFR2 MUTATED 1 0 2
FGFR2 WILD-TYPE 50 83 75
'FGFR2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0827 (Fisher's exact test), Q value = 0.31

Table S2063.  Gene #185: 'FGFR2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
FGFR2 MUTATED 26 15 8 4
FGFR2 WILD-TYPE 152 168 93 16
'FGFR2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.235 (Fisher's exact test), Q value = 0.56

Table S2064.  Gene #185: 'FGFR2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
FGFR2 MUTATED 21 11 18
FGFR2 WILD-TYPE 66 69 82
'FGFR2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.164 (Fisher's exact test), Q value = 0.46

Table S2065.  Gene #185: 'FGFR2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
FGFR2 MUTATED 10 14 22
FGFR2 WILD-TYPE 79 146 116
'FGFR2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.201 (Fisher's exact test), Q value = 0.51

Table S2066.  Gene #185: 'FGFR2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
FGFR2 MUTATED 27 14 5
FGFR2 WILD-TYPE 155 119 67
'FGFR2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 2e-05 (Fisher's exact test), Q value = 0.0017

Table S2067.  Gene #185: 'FGFR2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
FGFR2 MUTATED 12 19 17 5
FGFR2 WILD-TYPE 100 77 75 181

Figure S709.  Get High-res Image Gene #185: 'FGFR2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'FGFR2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S2068.  Gene #185: 'FGFR2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
FGFR2 MUTATED 11 9 11 9 9 1 3
FGFR2 WILD-TYPE 49 41 38 31 54 124 96

Figure S710.  Get High-res Image Gene #185: 'FGFR2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'FGFR2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S2069.  Gene #185: 'FGFR2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
FGFR2 MUTATED 31 9 7 6
FGFR2 WILD-TYPE 99 69 61 190

Figure S711.  Get High-res Image Gene #185: 'FGFR2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'FGFR2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00025 (Fisher's exact test), Q value = 0.0096

Table S2070.  Gene #185: 'FGFR2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
FGFR2 MUTATED 11 6 4 9 10 3 9 0 1
FGFR2 WILD-TYPE 29 56 24 71 59 45 34 28 73

Figure S712.  Get High-res Image Gene #185: 'FGFR2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'FGFR2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.298 (Fisher's exact test), Q value = 0.63

Table S2071.  Gene #185: 'FGFR2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
FGFR2 MUTATED 5 4 3 6
FGFR2 WILD-TYPE 28 27 24 13
'FGFR2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.338 (Fisher's exact test), Q value = 0.67

Table S2072.  Gene #185: 'FGFR2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
FGFR2 MUTATED 11 0 5 2
FGFR2 WILD-TYPE 43 10 19 20
'FAM134A MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.787 (Fisher's exact test), Q value = 1

Table S2073.  Gene #186: 'FAM134A MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
FAM134A MUTATED 1 0 1 1
FAM134A WILD-TYPE 45 58 63 42
'FAM134A MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.183 (Fisher's exact test), Q value = 0.48

Table S2074.  Gene #186: 'FAM134A MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
FAM134A MUTATED 2 0 1
FAM134A WILD-TYPE 49 83 76
'FAM134A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.163 (Fisher's exact test), Q value = 0.46

Table S2075.  Gene #186: 'FAM134A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
FAM134A MUTATED 6 2 0 0
FAM134A WILD-TYPE 172 181 101 20
'FAM134A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.629 (Fisher's exact test), Q value = 0.93

Table S2076.  Gene #186: 'FAM134A MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
FAM134A MUTATED 1 1 3
FAM134A WILD-TYPE 86 79 97
'FAM134A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.197 (Fisher's exact test), Q value = 0.5

Table S2077.  Gene #186: 'FAM134A MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
FAM134A MUTATED 0 5 2
FAM134A WILD-TYPE 89 155 136
'FAM134A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.304 (Fisher's exact test), Q value = 0.63

Table S2078.  Gene #186: 'FAM134A MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
FAM134A MUTATED 3 4 0
FAM134A WILD-TYPE 179 129 72
'FAM134A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.151 (Fisher's exact test), Q value = 0.43

Table S2079.  Gene #186: 'FAM134A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
FAM134A MUTATED 1 4 0 3
FAM134A WILD-TYPE 111 92 92 183
'FAM134A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.263 (Fisher's exact test), Q value = 0.59

Table S2080.  Gene #186: 'FAM134A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
FAM134A MUTATED 0 2 2 1 0 1 2
FAM134A WILD-TYPE 60 48 47 39 63 124 97
'FAM134A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.351 (Fisher's exact test), Q value = 0.68

Table S2081.  Gene #186: 'FAM134A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
FAM134A MUTATED 4 0 1 2
FAM134A WILD-TYPE 126 78 67 194
'FAM134A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.302 (Fisher's exact test), Q value = 0.63

Table S2082.  Gene #186: 'FAM134A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
FAM134A MUTATED 1 1 0 0 1 1 2 1 0
FAM134A WILD-TYPE 39 61 28 80 68 47 41 27 74
'MLL2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00514 (Fisher's exact test), Q value = 0.065

Table S2083.  Gene #187: 'MLL2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
MLL2 MUTATED 6 0 1 3
MLL2 WILD-TYPE 40 58 63 40

Figure S713.  Get High-res Image Gene #187: 'MLL2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'MLL2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00454 (Fisher's exact test), Q value = 0.061

Table S2084.  Gene #187: 'MLL2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
MLL2 MUTATED 7 1 2
MLL2 WILD-TYPE 44 82 75

Figure S714.  Get High-res Image Gene #187: 'MLL2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'MLL2 MUTATION STATUS' versus 'CN_CNMF'

P value = 7e-05 (Fisher's exact test), Q value = 0.0041

Table S2085.  Gene #187: 'MLL2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
MLL2 MUTATED 38 12 6 2
MLL2 WILD-TYPE 140 171 95 18

Figure S715.  Get High-res Image Gene #187: 'MLL2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'MLL2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0743 (Fisher's exact test), Q value = 0.29

Table S2086.  Gene #187: 'MLL2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
MLL2 MUTATED 18 8 22
MLL2 WILD-TYPE 69 72 78
'MLL2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00087 (Fisher's exact test), Q value = 0.022

Table S2087.  Gene #187: 'MLL2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
MLL2 MUTATED 5 18 31
MLL2 WILD-TYPE 84 142 107

Figure S716.  Get High-res Image Gene #187: 'MLL2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'MLL2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.125 (Fisher's exact test), Q value = 0.39

Table S2088.  Gene #187: 'MLL2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
MLL2 MUTATED 30 19 5
MLL2 WILD-TYPE 152 114 67
'MLL2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00095 (Fisher's exact test), Q value = 0.024

Table S2089.  Gene #187: 'MLL2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
MLL2 MUTATED 12 20 16 11
MLL2 WILD-TYPE 100 76 76 175

Figure S717.  Get High-res Image Gene #187: 'MLL2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'MLL2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S2090.  Gene #187: 'MLL2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
MLL2 MUTATED 6 5 21 7 6 2 12
MLL2 WILD-TYPE 54 45 28 33 57 123 87

Figure S718.  Get High-res Image Gene #187: 'MLL2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'MLL2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00651 (Fisher's exact test), Q value = 0.074

Table S2091.  Gene #187: 'MLL2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
MLL2 MUTATED 25 12 3 18
MLL2 WILD-TYPE 105 66 65 178

Figure S719.  Get High-res Image Gene #187: 'MLL2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'MLL2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00224 (Fisher's exact test), Q value = 0.04

Table S2092.  Gene #187: 'MLL2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
MLL2 MUTATED 6 10 1 6 16 4 9 4 2
MLL2 WILD-TYPE 34 52 27 74 53 44 34 24 72

Figure S720.  Get High-res Image Gene #187: 'MLL2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'MLL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00031 (Fisher's exact test), Q value = 0.011

Table S2093.  Gene #187: 'MLL2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
MLL2 MUTATED 3 3 2 10
MLL2 WILD-TYPE 30 28 25 9

Figure S721.  Get High-res Image Gene #187: 'MLL2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'MLL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.31 (Fisher's exact test), Q value = 0.64

Table S2094.  Gene #187: 'MLL2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
MLL2 MUTATED 12 0 4 2
MLL2 WILD-TYPE 42 10 20 20
'LRRC39 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.074 (Fisher's exact test), Q value = 0.29

Table S2095.  Gene #188: 'LRRC39 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
LRRC39 MUTATED 6 2 0 1
LRRC39 WILD-TYPE 172 181 101 19
'LRRC39 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.443 (Fisher's exact test), Q value = 0.77

Table S2096.  Gene #188: 'LRRC39 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
LRRC39 MUTATED 4 1 2
LRRC39 WILD-TYPE 83 79 98
'LRRC39 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.082 (Fisher's exact test), Q value = 0.31

Table S2097.  Gene #188: 'LRRC39 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
LRRC39 MUTATED 1 1 6
LRRC39 WILD-TYPE 88 159 132
'LRRC39 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0687 (Fisher's exact test), Q value = 0.28

Table S2098.  Gene #188: 'LRRC39 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
LRRC39 MUTATED 6 0 2
LRRC39 WILD-TYPE 176 133 70
'LRRC39 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0721 (Fisher's exact test), Q value = 0.29

Table S2099.  Gene #188: 'LRRC39 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
LRRC39 MUTATED 1 1 5 2
LRRC39 WILD-TYPE 111 95 87 184
'LRRC39 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0107 (Fisher's exact test), Q value = 0.1

Table S2100.  Gene #188: 'LRRC39 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
LRRC39 MUTATED 0 0 4 1 2 0 2
LRRC39 WILD-TYPE 60 50 45 39 61 125 97

Figure S722.  Get High-res Image Gene #188: 'LRRC39 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'LRRC39 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.502 (Fisher's exact test), Q value = 0.83

Table S2101.  Gene #188: 'LRRC39 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
LRRC39 MUTATED 4 2 1 2
LRRC39 WILD-TYPE 126 76 67 194
'LRRC39 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0338 (Fisher's exact test), Q value = 0.19

Table S2102.  Gene #188: 'LRRC39 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
LRRC39 MUTATED 0 3 0 0 4 0 2 0 0
LRRC39 WILD-TYPE 40 59 28 80 65 48 41 28 74

Figure S723.  Get High-res Image Gene #188: 'LRRC39 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'ST8SIA6 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0655 (Fisher's exact test), Q value = 0.28

Table S2103.  Gene #189: 'ST8SIA6 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ST8SIA6 MUTATED 1 0 0 2
ST8SIA6 WILD-TYPE 45 58 64 41
'ST8SIA6 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2104.  Gene #189: 'ST8SIA6 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ST8SIA6 MUTATED 1 1 1
ST8SIA6 WILD-TYPE 50 82 76
'ST8SIA6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0132 (Fisher's exact test), Q value = 0.11

Table S2105.  Gene #189: 'ST8SIA6 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ST8SIA6 MUTATED 11 3 0 0
ST8SIA6 WILD-TYPE 167 180 101 20

Figure S724.  Get High-res Image Gene #189: 'ST8SIA6 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ST8SIA6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.508 (Fisher's exact test), Q value = 0.83

Table S2106.  Gene #189: 'ST8SIA6 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ST8SIA6 MUTATED 3 2 6
ST8SIA6 WILD-TYPE 84 78 94
'ST8SIA6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.542 (Fisher's exact test), Q value = 0.86

Table S2107.  Gene #189: 'ST8SIA6 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ST8SIA6 MUTATED 1 6 4
ST8SIA6 WILD-TYPE 88 154 134
'ST8SIA6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.334 (Fisher's exact test), Q value = 0.66

Table S2108.  Gene #189: 'ST8SIA6 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ST8SIA6 MUTATED 3 6 2
ST8SIA6 WILD-TYPE 179 127 70
'ST8SIA6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.255 (Fisher's exact test), Q value = 0.58

Table S2109.  Gene #189: 'ST8SIA6 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ST8SIA6 MUTATED 2 5 4 3
ST8SIA6 WILD-TYPE 110 91 88 183
'ST8SIA6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0102 (Fisher's exact test), Q value = 0.097

Table S2110.  Gene #189: 'ST8SIA6 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ST8SIA6 MUTATED 3 2 5 1 1 0 2
ST8SIA6 WILD-TYPE 57 48 44 39 62 125 97

Figure S725.  Get High-res Image Gene #189: 'ST8SIA6 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ST8SIA6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.896 (Fisher's exact test), Q value = 1

Table S2111.  Gene #189: 'ST8SIA6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ST8SIA6 MUTATED 3 3 2 5
ST8SIA6 WILD-TYPE 127 75 66 191
'ST8SIA6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.759 (Fisher's exact test), Q value = 1

Table S2112.  Gene #189: 'ST8SIA6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ST8SIA6 MUTATED 1 2 1 1 4 1 2 0 1
ST8SIA6 WILD-TYPE 39 60 27 79 65 47 41 28 73
'ST8SIA6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.485 (Fisher's exact test), Q value = 0.81

Table S2113.  Gene #189: 'ST8SIA6 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
ST8SIA6 MUTATED 2 0 1 0
ST8SIA6 WILD-TYPE 31 31 26 19
'ST8SIA6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.254 (Fisher's exact test), Q value = 0.58

Table S2114.  Gene #189: 'ST8SIA6 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
ST8SIA6 MUTATED 1 0 0 2
ST8SIA6 WILD-TYPE 53 10 24 20
'CAB39L MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00077 (Fisher's exact test), Q value = 0.021

Table S2115.  Gene #190: 'CAB39L MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
CAB39L MUTATED 10 0 0 0
CAB39L WILD-TYPE 168 183 101 20

Figure S726.  Get High-res Image Gene #190: 'CAB39L MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'CAB39L MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00979 (Fisher's exact test), Q value = 0.094

Table S2116.  Gene #190: 'CAB39L MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
CAB39L MUTATED 1 0 7
CAB39L WILD-TYPE 86 80 93

Figure S727.  Get High-res Image Gene #190: 'CAB39L MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'CAB39L MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0519 (Fisher's exact test), Q value = 0.25

Table S2117.  Gene #190: 'CAB39L MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
CAB39L MUTATED 0 3 7
CAB39L WILD-TYPE 89 157 131
'CAB39L MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.272 (Fisher's exact test), Q value = 0.6

Table S2118.  Gene #190: 'CAB39L MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
CAB39L MUTATED 7 3 0
CAB39L WILD-TYPE 175 130 72
'CAB39L MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0105 (Fisher's exact test), Q value = 0.098

Table S2119.  Gene #190: 'CAB39L MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
CAB39L MUTATED 0 6 2 2
CAB39L WILD-TYPE 112 90 90 184

Figure S728.  Get High-res Image Gene #190: 'CAB39L MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'CAB39L MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 2e-05 (Fisher's exact test), Q value = 0.0017

Table S2120.  Gene #190: 'CAB39L MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
CAB39L MUTATED 1 1 7 0 0 0 1
CAB39L WILD-TYPE 59 49 42 40 63 125 98

Figure S729.  Get High-res Image Gene #190: 'CAB39L MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CAB39L MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.189 (Fisher's exact test), Q value = 0.49

Table S2121.  Gene #190: 'CAB39L MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
CAB39L MUTATED 5 0 0 5
CAB39L WILD-TYPE 125 78 68 191
'CAB39L MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.158 (Fisher's exact test), Q value = 0.45

Table S2122.  Gene #190: 'CAB39L MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
CAB39L MUTATED 1 3 1 1 4 0 0 0 0
CAB39L WILD-TYPE 39 59 27 79 65 48 43 28 74
'CAB39L MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00417 (Fisher's exact test), Q value = 0.059

Table S2123.  Gene #190: 'CAB39L MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
CAB39L MUTATED 0 0 0 3
CAB39L WILD-TYPE 33 31 27 16

Figure S730.  Get High-res Image Gene #190: 'CAB39L MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'CAB39L MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2124.  Gene #190: 'CAB39L MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
CAB39L MUTATED 2 0 1 0
CAB39L WILD-TYPE 52 10 23 22
'ERBB4 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.024 (Fisher's exact test), Q value = 0.16

Table S2125.  Gene #191: 'ERBB4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ERBB4 MUTATED 7 1 5 7
ERBB4 WILD-TYPE 39 57 59 36

Figure S731.  Get High-res Image Gene #191: 'ERBB4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'ERBB4 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.173 (Fisher's exact test), Q value = 0.47

Table S2126.  Gene #191: 'ERBB4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ERBB4 MUTATED 8 5 7
ERBB4 WILD-TYPE 43 78 70
'ERBB4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0269 (Fisher's exact test), Q value = 0.17

Table S2127.  Gene #191: 'ERBB4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ERBB4 MUTATED 30 15 12 0
ERBB4 WILD-TYPE 148 168 89 20

Figure S732.  Get High-res Image Gene #191: 'ERBB4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ERBB4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.541 (Fisher's exact test), Q value = 0.86

Table S2128.  Gene #191: 'ERBB4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ERBB4 MUTATED 15 9 15
ERBB4 WILD-TYPE 72 71 85
'ERBB4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.871 (Fisher's exact test), Q value = 1

Table S2129.  Gene #191: 'ERBB4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ERBB4 MUTATED 10 20 19
ERBB4 WILD-TYPE 79 140 119
'ERBB4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.339 (Fisher's exact test), Q value = 0.67

Table S2130.  Gene #191: 'ERBB4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ERBB4 MUTATED 28 13 8
ERBB4 WILD-TYPE 154 120 64
'ERBB4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.134 (Fisher's exact test), Q value = 0.41

Table S2131.  Gene #191: 'ERBB4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ERBB4 MUTATED 10 15 16 18
ERBB4 WILD-TYPE 102 81 76 168
'ERBB4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0263 (Fisher's exact test), Q value = 0.16

Table S2132.  Gene #191: 'ERBB4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ERBB4 MUTATED 10 3 11 6 8 7 14
ERBB4 WILD-TYPE 50 47 38 34 55 118 85

Figure S733.  Get High-res Image Gene #191: 'ERBB4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ERBB4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.191 (Fisher's exact test), Q value = 0.49

Table S2133.  Gene #191: 'ERBB4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ERBB4 MUTATED 16 15 6 20
ERBB4 WILD-TYPE 114 63 62 176
'ERBB4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0195 (Fisher's exact test), Q value = 0.14

Table S2134.  Gene #191: 'ERBB4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ERBB4 MUTATED 5 13 6 6 11 1 5 5 5
ERBB4 WILD-TYPE 35 49 22 74 58 47 38 23 69

Figure S734.  Get High-res Image Gene #191: 'ERBB4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'ERBB4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.74 (Fisher's exact test), Q value = 1

Table S2135.  Gene #191: 'ERBB4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
ERBB4 MUTATED 2 3 4 2
ERBB4 WILD-TYPE 31 28 23 17
'ERBB4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.125 (Fisher's exact test), Q value = 0.39

Table S2136.  Gene #191: 'ERBB4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
ERBB4 MUTATED 5 2 4 0
ERBB4 WILD-TYPE 49 8 20 22
'UGT3A2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0362 (Fisher's exact test), Q value = 0.2

Table S2137.  Gene #192: 'UGT3A2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
UGT3A2 MUTATED 1 0 1 4
UGT3A2 WILD-TYPE 45 58 63 39

Figure S735.  Get High-res Image Gene #192: 'UGT3A2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'UGT3A2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.879 (Fisher's exact test), Q value = 1

Table S2138.  Gene #192: 'UGT3A2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
UGT3A2 MUTATED 2 2 2
UGT3A2 WILD-TYPE 49 81 75
'UGT3A2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00108 (Fisher's exact test), Q value = 0.026

Table S2139.  Gene #192: 'UGT3A2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
UGT3A2 MUTATED 17 2 3 0
UGT3A2 WILD-TYPE 161 181 98 20

Figure S736.  Get High-res Image Gene #192: 'UGT3A2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'UGT3A2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.181 (Fisher's exact test), Q value = 0.48

Table S2140.  Gene #192: 'UGT3A2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
UGT3A2 MUTATED 8 2 6
UGT3A2 WILD-TYPE 79 78 94
'UGT3A2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.144 (Fisher's exact test), Q value = 0.42

Table S2141.  Gene #192: 'UGT3A2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
UGT3A2 MUTATED 3 5 11
UGT3A2 WILD-TYPE 86 155 127
'UGT3A2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.384 (Fisher's exact test), Q value = 0.71

Table S2142.  Gene #192: 'UGT3A2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
UGT3A2 MUTATED 12 4 3
UGT3A2 WILD-TYPE 170 129 69
'UGT3A2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.168 (Fisher's exact test), Q value = 0.46

Table S2143.  Gene #192: 'UGT3A2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
UGT3A2 MUTATED 2 7 6 7
UGT3A2 WILD-TYPE 110 89 86 179
'UGT3A2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00435 (Fisher's exact test), Q value = 0.06

Table S2144.  Gene #192: 'UGT3A2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
UGT3A2 MUTATED 4 0 8 2 2 2 4
UGT3A2 WILD-TYPE 56 50 41 38 61 123 95

Figure S737.  Get High-res Image Gene #192: 'UGT3A2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'UGT3A2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.132 (Fisher's exact test), Q value = 0.41

Table S2145.  Gene #192: 'UGT3A2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
UGT3A2 MUTATED 9 4 0 9
UGT3A2 WILD-TYPE 121 74 68 187
'UGT3A2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.147 (Fisher's exact test), Q value = 0.43

Table S2146.  Gene #192: 'UGT3A2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
UGT3A2 MUTATED 2 6 1 1 7 1 1 0 3
UGT3A2 WILD-TYPE 38 56 27 79 62 47 42 28 71
'UGT3A2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00056 (Fisher's exact test), Q value = 0.017

Table S2147.  Gene #192: 'UGT3A2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
UGT3A2 MUTATED 1 0 0 5
UGT3A2 WILD-TYPE 32 31 27 14

Figure S738.  Get High-res Image Gene #192: 'UGT3A2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'UGT3A2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.461 (Fisher's exact test), Q value = 0.79

Table S2148.  Gene #192: 'UGT3A2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
UGT3A2 MUTATED 5 0 0 1
UGT3A2 WILD-TYPE 49 10 24 21
'ARHGAP5 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00627 (Fisher's exact test), Q value = 0.073

Table S2149.  Gene #193: 'ARHGAP5 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ARHGAP5 MUTATED 1 1 0 5
ARHGAP5 WILD-TYPE 45 57 64 38

Figure S739.  Get High-res Image Gene #193: 'ARHGAP5 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'ARHGAP5 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.545 (Fisher's exact test), Q value = 0.86

Table S2150.  Gene #193: 'ARHGAP5 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ARHGAP5 MUTATED 3 2 2
ARHGAP5 WILD-TYPE 48 81 75
'ARHGAP5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00093 (Fisher's exact test), Q value = 0.023

Table S2151.  Gene #193: 'ARHGAP5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ARHGAP5 MUTATED 18 4 1 0
ARHGAP5 WILD-TYPE 160 179 100 20

Figure S740.  Get High-res Image Gene #193: 'ARHGAP5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ARHGAP5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0741 (Fisher's exact test), Q value = 0.29

Table S2152.  Gene #193: 'ARHGAP5 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ARHGAP5 MUTATED 5 1 9
ARHGAP5 WILD-TYPE 82 79 91
'ARHGAP5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.391 (Fisher's exact test), Q value = 0.72

Table S2153.  Gene #193: 'ARHGAP5 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ARHGAP5 MUTATED 2 8 9
ARHGAP5 WILD-TYPE 87 152 129
'ARHGAP5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.582 (Fisher's exact test), Q value = 0.89

Table S2154.  Gene #193: 'ARHGAP5 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ARHGAP5 MUTATED 11 6 2
ARHGAP5 WILD-TYPE 171 127 70
'ARHGAP5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.266 (Fisher's exact test), Q value = 0.59

Table S2155.  Gene #193: 'ARHGAP5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ARHGAP5 MUTATED 3 4 8 8
ARHGAP5 WILD-TYPE 109 92 84 178
'ARHGAP5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00026 (Fisher's exact test), Q value = 0.0099

Table S2156.  Gene #193: 'ARHGAP5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ARHGAP5 MUTATED 3 1 9 0 2 1 7
ARHGAP5 WILD-TYPE 57 49 40 40 61 124 92

Figure S741.  Get High-res Image Gene #193: 'ARHGAP5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ARHGAP5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.832 (Fisher's exact test), Q value = 1

Table S2157.  Gene #193: 'ARHGAP5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ARHGAP5 MUTATED 7 5 3 8
ARHGAP5 WILD-TYPE 123 73 65 188
'ARHGAP5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00075 (Fisher's exact test), Q value = 0.02

Table S2158.  Gene #193: 'ARHGAP5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ARHGAP5 MUTATED 1 4 1 0 11 0 3 1 2
ARHGAP5 WILD-TYPE 39 58 27 80 58 48 40 27 72

Figure S742.  Get High-res Image Gene #193: 'ARHGAP5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'ARHGAP5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0253 (Fisher's exact test), Q value = 0.16

Table S2159.  Gene #193: 'ARHGAP5 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
ARHGAP5 MUTATED 2 0 1 4
ARHGAP5 WILD-TYPE 31 31 26 15

Figure S743.  Get High-res Image Gene #193: 'ARHGAP5 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'ARHGAP5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.547 (Fisher's exact test), Q value = 0.87

Table S2160.  Gene #193: 'ARHGAP5 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
ARHGAP5 MUTATED 5 0 2 0
ARHGAP5 WILD-TYPE 49 10 22 22
'EP400 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00449 (Fisher's exact test), Q value = 0.061

Table S2161.  Gene #194: 'EP400 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
EP400 MUTATED 5 0 2 6
EP400 WILD-TYPE 41 58 62 37

Figure S744.  Get High-res Image Gene #194: 'EP400 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'EP400 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00748 (Fisher's exact test), Q value = 0.08

Table S2162.  Gene #194: 'EP400 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
EP400 MUTATED 8 2 3
EP400 WILD-TYPE 43 81 74

Figure S745.  Get High-res Image Gene #194: 'EP400 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'EP400 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0258 (Fisher's exact test), Q value = 0.16

Table S2163.  Gene #194: 'EP400 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
EP400 MUTATED 24 10 5 1
EP400 WILD-TYPE 154 173 96 19

Figure S746.  Get High-res Image Gene #194: 'EP400 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'EP400 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.165 (Fisher's exact test), Q value = 0.46

Table S2164.  Gene #194: 'EP400 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
EP400 MUTATED 5 7 14
EP400 WILD-TYPE 82 73 86
'EP400 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.915 (Fisher's exact test), Q value = 1

Table S2165.  Gene #194: 'EP400 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
EP400 MUTATED 8 12 12
EP400 WILD-TYPE 81 148 126
'EP400 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.612 (Fisher's exact test), Q value = 0.91

Table S2166.  Gene #194: 'EP400 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
EP400 MUTATED 14 10 8
EP400 WILD-TYPE 168 123 64
'EP400 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.21 (Fisher's exact test), Q value = 0.52

Table S2167.  Gene #194: 'EP400 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
EP400 MUTATED 5 12 8 15
EP400 WILD-TYPE 107 84 84 171
'EP400 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00316 (Fisher's exact test), Q value = 0.05

Table S2168.  Gene #194: 'EP400 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
EP400 MUTATED 3 2 11 3 5 4 12
EP400 WILD-TYPE 57 48 38 37 58 121 87

Figure S747.  Get High-res Image Gene #194: 'EP400 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'EP400 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.875 (Fisher's exact test), Q value = 1

Table S2169.  Gene #194: 'EP400 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
EP400 MUTATED 12 5 4 16
EP400 WILD-TYPE 118 73 64 180
'EP400 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00208 (Fisher's exact test), Q value = 0.038

Table S2170.  Gene #194: 'EP400 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
EP400 MUTATED 4 5 2 3 15 0 3 2 3
EP400 WILD-TYPE 36 57 26 77 54 48 40 26 71

Figure S748.  Get High-res Image Gene #194: 'EP400 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'EP400 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2171.  Gene #194: 'EP400 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
EP400 MUTATED 2 2 1 1
EP400 WILD-TYPE 31 29 26 18
'EP400 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.598 (Fisher's exact test), Q value = 0.9

Table S2172.  Gene #194: 'EP400 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
EP400 MUTATED 2 1 1 2
EP400 WILD-TYPE 52 9 23 20
'MEN1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.324 (Fisher's exact test), Q value = 0.65

Table S2173.  Gene #195: 'MEN1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
MEN1 MUTATED 14 7 6 0
MEN1 WILD-TYPE 164 176 95 20
'MEN1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.339 (Fisher's exact test), Q value = 0.67

Table S2174.  Gene #195: 'MEN1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
MEN1 MUTATED 8 5 13
MEN1 WILD-TYPE 79 75 87
'MEN1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.276 (Fisher's exact test), Q value = 0.6

Table S2175.  Gene #195: 'MEN1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
MEN1 MUTATED 2 9 10
MEN1 WILD-TYPE 87 151 128
'MEN1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.955 (Fisher's exact test), Q value = 1

Table S2176.  Gene #195: 'MEN1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
MEN1 MUTATED 10 8 3
MEN1 WILD-TYPE 172 125 69
'MEN1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S2177.  Gene #195: 'MEN1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
MEN1 MUTATED 6 14 6 1
MEN1 WILD-TYPE 106 82 86 185

Figure S749.  Get High-res Image Gene #195: 'MEN1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'MEN1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S2178.  Gene #195: 'MEN1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
MEN1 MUTATED 3 7 8 4 4 0 1
MEN1 WILD-TYPE 57 43 41 36 59 125 98

Figure S750.  Get High-res Image Gene #195: 'MEN1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'MEN1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00064 (Fisher's exact test), Q value = 0.018

Table S2179.  Gene #195: 'MEN1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
MEN1 MUTATED 15 6 3 3
MEN1 WILD-TYPE 115 72 65 193

Figure S751.  Get High-res Image Gene #195: 'MEN1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'MEN1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.105 (Fisher's exact test), Q value = 0.36

Table S2180.  Gene #195: 'MEN1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
MEN1 MUTATED 3 4 3 4 6 3 4 0 0
MEN1 WILD-TYPE 37 58 25 76 63 45 39 28 74
'MEN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.38 (Fisher's exact test), Q value = 0.71

Table S2181.  Gene #195: 'MEN1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
MEN1 MUTATED 1 3 3 3
MEN1 WILD-TYPE 32 28 24 16
'MEN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00889 (Fisher's exact test), Q value = 0.088

Table S2182.  Gene #195: 'MEN1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
MEN1 MUTATED 1 2 2 5
MEN1 WILD-TYPE 53 8 22 17

Figure S752.  Get High-res Image Gene #195: 'MEN1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

'SENP6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.107 (Fisher's exact test), Q value = 0.36

Table S2183.  Gene #196: 'SENP6 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
SENP6 MUTATED 12 4 2 0
SENP6 WILD-TYPE 166 179 99 20
'SENP6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.194 (Fisher's exact test), Q value = 0.5

Table S2184.  Gene #196: 'SENP6 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
SENP6 MUTATED 5 2 9
SENP6 WILD-TYPE 82 78 91
'SENP6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.187 (Fisher's exact test), Q value = 0.49

Table S2185.  Gene #196: 'SENP6 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
SENP6 MUTATED 1 7 8
SENP6 WILD-TYPE 88 153 130
'SENP6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.372 (Fisher's exact test), Q value = 0.7

Table S2186.  Gene #196: 'SENP6 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
SENP6 MUTATED 10 5 1
SENP6 WILD-TYPE 172 128 71
'SENP6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0148 (Fisher's exact test), Q value = 0.12

Table S2187.  Gene #196: 'SENP6 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
SENP6 MUTATED 3 7 6 2
SENP6 WILD-TYPE 109 89 86 184

Figure S753.  Get High-res Image Gene #196: 'SENP6 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'SENP6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S2188.  Gene #196: 'SENP6 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
SENP6 MUTATED 3 1 9 0 4 0 1
SENP6 WILD-TYPE 57 49 40 40 59 125 98

Figure S754.  Get High-res Image Gene #196: 'SENP6 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'SENP6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0722 (Fisher's exact test), Q value = 0.29

Table S2189.  Gene #196: 'SENP6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
SENP6 MUTATED 9 3 2 3
SENP6 WILD-TYPE 121 75 66 193
'SENP6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0439 (Fisher's exact test), Q value = 0.22

Table S2190.  Gene #196: 'SENP6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
SENP6 MUTATED 2 5 1 2 6 0 1 0 0
SENP6 WILD-TYPE 38 57 27 78 63 48 42 28 74

Figure S755.  Get High-res Image Gene #196: 'SENP6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'SENP6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.781 (Fisher's exact test), Q value = 1

Table S2191.  Gene #196: 'SENP6 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
SENP6 MUTATED 1 0 1 1
SENP6 WILD-TYPE 32 31 26 18
'SENP6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.696 (Fisher's exact test), Q value = 0.97

Table S2192.  Gene #196: 'SENP6 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
SENP6 MUTATED 1 0 1 1
SENP6 WILD-TYPE 53 10 23 21
'OR7C2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.85 (Fisher's exact test), Q value = 1

Table S2193.  Gene #197: 'OR7C2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
OR7C2 MUTATED 6 4 2 0
OR7C2 WILD-TYPE 172 179 99 20
'OR7C2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.919 (Fisher's exact test), Q value = 1

Table S2194.  Gene #197: 'OR7C2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
OR7C2 MUTATED 4 3 3
OR7C2 WILD-TYPE 83 77 97
'OR7C2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0252 (Fisher's exact test), Q value = 0.16

Table S2195.  Gene #197: 'OR7C2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
OR7C2 MUTATED 0 3 8
OR7C2 WILD-TYPE 89 157 130

Figure S756.  Get High-res Image Gene #197: 'OR7C2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'OR7C2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.309 (Fisher's exact test), Q value = 0.64

Table S2196.  Gene #197: 'OR7C2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
OR7C2 MUTATED 8 2 1
OR7C2 WILD-TYPE 174 131 71
'OR7C2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.182 (Fisher's exact test), Q value = 0.48

Table S2197.  Gene #197: 'OR7C2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
OR7C2 MUTATED 3 2 5 2
OR7C2 WILD-TYPE 109 94 87 184
'OR7C2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0465 (Fisher's exact test), Q value = 0.23

Table S2198.  Gene #197: 'OR7C2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
OR7C2 MUTATED 3 1 3 0 3 0 2
OR7C2 WILD-TYPE 57 49 46 40 60 125 97

Figure S757.  Get High-res Image Gene #197: 'OR7C2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'OR7C2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.151 (Fisher's exact test), Q value = 0.44

Table S2199.  Gene #197: 'OR7C2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
OR7C2 MUTATED 3 5 1 3
OR7C2 WILD-TYPE 127 73 67 193
'OR7C2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0631 (Fisher's exact test), Q value = 0.27

Table S2200.  Gene #197: 'OR7C2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
OR7C2 MUTATED 1 5 2 1 2 0 1 0 0
OR7C2 WILD-TYPE 39 57 26 79 67 48 42 28 74
'OR7C2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.783 (Fisher's exact test), Q value = 1

Table S2201.  Gene #197: 'OR7C2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
OR7C2 MUTATED 1 0 1 1
OR7C2 WILD-TYPE 32 31 26 18
'OR7C2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.839 (Fisher's exact test), Q value = 1

Table S2202.  Gene #197: 'OR7C2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
OR7C2 MUTATED 2 0 0 1
OR7C2 WILD-TYPE 52 10 24 21
'PDGFRA MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0183 (Fisher's exact test), Q value = 0.13

Table S2203.  Gene #198: 'PDGFRA MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
PDGFRA MUTATED 3 2 0 5
PDGFRA WILD-TYPE 43 56 64 38

Figure S758.  Get High-res Image Gene #198: 'PDGFRA MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'PDGFRA MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.509 (Fisher's exact test), Q value = 0.83

Table S2204.  Gene #198: 'PDGFRA MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
PDGFRA MUTATED 4 3 3
PDGFRA WILD-TYPE 47 80 74
'PDGFRA MUTATION STATUS' versus 'CN_CNMF'

P value = 0.103 (Fisher's exact test), Q value = 0.36

Table S2205.  Gene #198: 'PDGFRA MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
PDGFRA MUTATED 28 14 10 2
PDGFRA WILD-TYPE 150 169 91 18
'PDGFRA MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.852 (Fisher's exact test), Q value = 1

Table S2206.  Gene #198: 'PDGFRA MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
PDGFRA MUTATED 13 12 18
PDGFRA WILD-TYPE 74 68 82
'PDGFRA MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.462 (Fisher's exact test), Q value = 0.79

Table S2207.  Gene #198: 'PDGFRA MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
PDGFRA MUTATED 7 21 17
PDGFRA WILD-TYPE 82 139 121
'PDGFRA MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.894 (Fisher's exact test), Q value = 1

Table S2208.  Gene #198: 'PDGFRA MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
PDGFRA MUTATED 20 17 8
PDGFRA WILD-TYPE 162 116 64
'PDGFRA MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0393 (Fisher's exact test), Q value = 0.21

Table S2209.  Gene #198: 'PDGFRA MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
PDGFRA MUTATED 15 16 11 12
PDGFRA WILD-TYPE 97 80 81 174

Figure S759.  Get High-res Image Gene #198: 'PDGFRA MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'PDGFRA MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 2e-05 (Fisher's exact test), Q value = 0.0017

Table S2210.  Gene #198: 'PDGFRA MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
PDGFRA MUTATED 8 9 11 3 12 2 9
PDGFRA WILD-TYPE 52 41 38 37 51 123 90

Figure S760.  Get High-res Image Gene #198: 'PDGFRA MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'PDGFRA MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00458 (Fisher's exact test), Q value = 0.061

Table S2211.  Gene #198: 'PDGFRA MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
PDGFRA MUTATED 24 11 6 12
PDGFRA WILD-TYPE 106 67 62 184

Figure S761.  Get High-res Image Gene #198: 'PDGFRA MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'PDGFRA MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0226 (Fisher's exact test), Q value = 0.15

Table S2212.  Gene #198: 'PDGFRA MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
PDGFRA MUTATED 9 9 6 5 8 5 7 1 3
PDGFRA WILD-TYPE 31 53 22 75 61 43 36 27 71

Figure S762.  Get High-res Image Gene #198: 'PDGFRA MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'PDGFRA MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.809 (Fisher's exact test), Q value = 1

Table S2213.  Gene #198: 'PDGFRA MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
PDGFRA MUTATED 4 5 2 2
PDGFRA WILD-TYPE 29 26 25 17
'PDGFRA MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.191 (Fisher's exact test), Q value = 0.49

Table S2214.  Gene #198: 'PDGFRA MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
PDGFRA MUTATED 4 2 2 5
PDGFRA WILD-TYPE 50 8 22 17
'KLC4 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.135 (Fisher's exact test), Q value = 0.41

Table S2215.  Gene #199: 'KLC4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
KLC4 MUTATED 3 0 1 2
KLC4 WILD-TYPE 43 58 63 41
'KLC4 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0719 (Fisher's exact test), Q value = 0.29

Table S2216.  Gene #199: 'KLC4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
KLC4 MUTATED 4 1 1
KLC4 WILD-TYPE 47 82 76
'KLC4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.102 (Fisher's exact test), Q value = 0.35

Table S2217.  Gene #199: 'KLC4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
KLC4 MUTATED 9 5 1 2
KLC4 WILD-TYPE 169 178 100 18
'KLC4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.723 (Fisher's exact test), Q value = 0.99

Table S2218.  Gene #199: 'KLC4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
KLC4 MUTATED 3 2 5
KLC4 WILD-TYPE 84 78 95
'KLC4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2219.  Gene #199: 'KLC4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
KLC4 MUTATED 3 5 5
KLC4 WILD-TYPE 86 155 133
'KLC4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.231 (Fisher's exact test), Q value = 0.55

Table S2220.  Gene #199: 'KLC4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
KLC4 MUTATED 5 3 5
KLC4 WILD-TYPE 177 130 67
'KLC4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.717 (Fisher's exact test), Q value = 0.99

Table S2221.  Gene #199: 'KLC4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
KLC4 MUTATED 3 5 2 6
KLC4 WILD-TYPE 109 91 90 180
'KLC4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.549 (Fisher's exact test), Q value = 0.87

Table S2222.  Gene #199: 'KLC4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
KLC4 MUTATED 3 1 3 1 1 2 5
KLC4 WILD-TYPE 57 49 46 39 62 123 94
'KLC4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.305 (Fisher's exact test), Q value = 0.63

Table S2223.  Gene #199: 'KLC4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
KLC4 MUTATED 5 4 0 8
KLC4 WILD-TYPE 125 74 68 188
'KLC4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0264 (Fisher's exact test), Q value = 0.16

Table S2224.  Gene #199: 'KLC4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
KLC4 MUTATED 1 2 1 0 6 5 1 0 1
KLC4 WILD-TYPE 39 60 27 80 63 43 42 28 73

Figure S763.  Get High-res Image Gene #199: 'KLC4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'KLC4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.873 (Fisher's exact test), Q value = 1

Table S2225.  Gene #199: 'KLC4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
KLC4 MUTATED 1 1 0 1
KLC4 WILD-TYPE 32 30 27 18
'KLC4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.838 (Fisher's exact test), Q value = 1

Table S2226.  Gene #199: 'KLC4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
KLC4 MUTATED 2 0 0 1
KLC4 WILD-TYPE 52 10 24 21
'INTS4 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0744 (Fisher's exact test), Q value = 0.29

Table S2227.  Gene #200: 'INTS4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
INTS4 MUTATED 2 0 0 2
INTS4 WILD-TYPE 44 58 64 41
'INTS4 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.557 (Fisher's exact test), Q value = 0.87

Table S2228.  Gene #200: 'INTS4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
INTS4 MUTATED 2 1 1
INTS4 WILD-TYPE 49 82 76
'INTS4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.167 (Fisher's exact test), Q value = 0.46

Table S2229.  Gene #200: 'INTS4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
INTS4 MUTATED 12 4 4 1
INTS4 WILD-TYPE 166 179 97 19
'INTS4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.953 (Fisher's exact test), Q value = 1

Table S2230.  Gene #200: 'INTS4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
INTS4 MUTATED 6 6 6
INTS4 WILD-TYPE 81 74 94
'INTS4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.314 (Fisher's exact test), Q value = 0.64

Table S2231.  Gene #200: 'INTS4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
INTS4 MUTATED 2 6 9
INTS4 WILD-TYPE 87 154 129
'INTS4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0588 (Fisher's exact test), Q value = 0.26

Table S2232.  Gene #200: 'INTS4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
INTS4 MUTATED 8 9 0
INTS4 WILD-TYPE 174 124 72
'INTS4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0462 (Fisher's exact test), Q value = 0.23

Table S2233.  Gene #200: 'INTS4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
INTS4 MUTATED 8 7 4 3
INTS4 WILD-TYPE 104 89 88 183

Figure S764.  Get High-res Image Gene #200: 'INTS4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'INTS4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00198 (Fisher's exact test), Q value = 0.037

Table S2234.  Gene #200: 'INTS4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
INTS4 MUTATED 7 3 6 1 2 1 2
INTS4 WILD-TYPE 53 47 43 39 61 124 97

Figure S765.  Get High-res Image Gene #200: 'INTS4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'INTS4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.129 (Fisher's exact test), Q value = 0.4

Table S2235.  Gene #200: 'INTS4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
INTS4 MUTATED 9 6 2 5
INTS4 WILD-TYPE 121 72 66 191
'INTS4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.642 (Fisher's exact test), Q value = 0.93

Table S2236.  Gene #200: 'INTS4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
INTS4 MUTATED 1 6 0 3 5 2 2 1 2
INTS4 WILD-TYPE 39 56 28 77 64 46 41 27 72
'INTS4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0903 (Fisher's exact test), Q value = 0.33

Table S2237.  Gene #200: 'INTS4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
INTS4 MUTATED 0 2 3 3
INTS4 WILD-TYPE 33 29 24 16
'INTS4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.567 (Fisher's exact test), Q value = 0.87

Table S2238.  Gene #200: 'INTS4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
INTS4 MUTATED 3 1 3 1
INTS4 WILD-TYPE 51 9 21 21
'RBAK MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00779 (Fisher's exact test), Q value = 0.082

Table S2239.  Gene #201: 'RBAK MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
RBAK MUTATED 0 0 0 3
RBAK WILD-TYPE 46 58 64 40

Figure S766.  Get High-res Image Gene #201: 'RBAK MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'RBAK MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2240.  Gene #201: 'RBAK MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
RBAK MUTATED 1 1 1
RBAK WILD-TYPE 50 82 76
'RBAK MUTATION STATUS' versus 'CN_CNMF'

P value = 0.107 (Fisher's exact test), Q value = 0.36

Table S2241.  Gene #201: 'RBAK MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
RBAK MUTATED 12 4 2 0
RBAK WILD-TYPE 166 179 99 20
'RBAK MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.715 (Fisher's exact test), Q value = 0.99

Table S2242.  Gene #201: 'RBAK MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
RBAK MUTATED 6 3 6
RBAK WILD-TYPE 81 77 94
'RBAK MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.11 (Fisher's exact test), Q value = 0.37

Table S2243.  Gene #201: 'RBAK MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
RBAK MUTATED 1 5 9
RBAK WILD-TYPE 88 155 129
'RBAK MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0617 (Fisher's exact test), Q value = 0.27

Table S2244.  Gene #201: 'RBAK MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
RBAK MUTATED 11 4 0
RBAK WILD-TYPE 171 129 72
'RBAK MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0104 (Fisher's exact test), Q value = 0.098

Table S2245.  Gene #201: 'RBAK MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
RBAK MUTATED 3 8 5 2
RBAK WILD-TYPE 109 88 87 184

Figure S767.  Get High-res Image Gene #201: 'RBAK MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'RBAK MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00258 (Fisher's exact test), Q value = 0.044

Table S2246.  Gene #201: 'RBAK MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
RBAK MUTATED 1 5 3 0 5 0 4
RBAK WILD-TYPE 59 45 46 40 58 125 95

Figure S768.  Get High-res Image Gene #201: 'RBAK MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'RBAK MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0327 (Fisher's exact test), Q value = 0.18

Table S2247.  Gene #201: 'RBAK MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
RBAK MUTATED 10 3 0 5
RBAK WILD-TYPE 120 75 68 191

Figure S769.  Get High-res Image Gene #201: 'RBAK MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'RBAK MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.141 (Fisher's exact test), Q value = 0.42

Table S2248.  Gene #201: 'RBAK MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
RBAK MUTATED 1 4 4 2 4 1 0 0 2
RBAK WILD-TYPE 39 58 24 78 65 47 43 28 72
'RBAK MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0445 (Fisher's exact test), Q value = 0.22

Table S2249.  Gene #201: 'RBAK MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
RBAK MUTATED 0 3 0 2
RBAK WILD-TYPE 33 28 27 17

Figure S770.  Get High-res Image Gene #201: 'RBAK MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'RBAK MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2250.  Gene #201: 'RBAK MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
RBAK MUTATED 3 0 1 1
RBAK WILD-TYPE 51 10 23 21
'EIF4A2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.524 (Fisher's exact test), Q value = 0.85

Table S2251.  Gene #202: 'EIF4A2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
EIF4A2 MUTATED 0 2 2 0
EIF4A2 WILD-TYPE 46 56 62 43
'EIF4A2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.45 (Fisher's exact test), Q value = 0.78

Table S2252.  Gene #202: 'EIF4A2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
EIF4A2 MUTATED 0 3 1
EIF4A2 WILD-TYPE 51 80 76
'EIF4A2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.422 (Fisher's exact test), Q value = 0.75

Table S2253.  Gene #202: 'EIF4A2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
EIF4A2 MUTATED 6 4 1 1
EIF4A2 WILD-TYPE 172 179 100 19
'EIF4A2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.147 (Fisher's exact test), Q value = 0.43

Table S2254.  Gene #202: 'EIF4A2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
EIF4A2 MUTATED 4 0 4
EIF4A2 WILD-TYPE 83 80 96
'EIF4A2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.182 (Fisher's exact test), Q value = 0.48

Table S2255.  Gene #202: 'EIF4A2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
EIF4A2 MUTATED 0 6 5
EIF4A2 WILD-TYPE 89 154 133
'EIF4A2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.786 (Fisher's exact test), Q value = 1

Table S2256.  Gene #202: 'EIF4A2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
EIF4A2 MUTATED 5 5 1
EIF4A2 WILD-TYPE 177 128 71
'EIF4A2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.25 (Fisher's exact test), Q value = 0.58

Table S2257.  Gene #202: 'EIF4A2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
EIF4A2 MUTATED 1 2 5 4
EIF4A2 WILD-TYPE 111 94 87 182
'EIF4A2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.412 (Fisher's exact test), Q value = 0.74

Table S2258.  Gene #202: 'EIF4A2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
EIF4A2 MUTATED 1 0 2 0 3 5 1
EIF4A2 WILD-TYPE 59 50 47 40 60 120 98
'EIF4A2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.233 (Fisher's exact test), Q value = 0.55

Table S2259.  Gene #202: 'EIF4A2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
EIF4A2 MUTATED 1 4 1 5
EIF4A2 WILD-TYPE 129 74 67 191
'EIF4A2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.733 (Fisher's exact test), Q value = 1

Table S2260.  Gene #202: 'EIF4A2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
EIF4A2 MUTATED 0 3 0 2 3 1 0 1 1
EIF4A2 WILD-TYPE 40 59 28 78 66 47 43 27 73
'EIF4A2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2261.  Gene #202: 'EIF4A2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
EIF4A2 MUTATED 1 1 1 0
EIF4A2 WILD-TYPE 32 30 26 19
'EIF4A2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2262.  Gene #202: 'EIF4A2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
EIF4A2 MUTATED 2 0 1 0
EIF4A2 WILD-TYPE 52 10 23 22
'FAM133B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.042 (Fisher's exact test), Q value = 0.22

Table S2263.  Gene #203: 'FAM133B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
FAM133B MUTATED 5 0 0 0
FAM133B WILD-TYPE 173 183 101 20

Figure S771.  Get High-res Image Gene #203: 'FAM133B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'FAM133B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.385 (Fisher's exact test), Q value = 0.71

Table S2264.  Gene #203: 'FAM133B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
FAM133B MUTATED 2 0 3
FAM133B WILD-TYPE 85 80 97
'FAM133B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.374 (Fisher's exact test), Q value = 0.7

Table S2265.  Gene #203: 'FAM133B MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
FAM133B MUTATED 0 2 3
FAM133B WILD-TYPE 89 158 135
'FAM133B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.168 (Fisher's exact test), Q value = 0.46

Table S2266.  Gene #203: 'FAM133B MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
FAM133B MUTATED 3 0 2
FAM133B WILD-TYPE 179 133 70
'FAM133B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.104 (Fisher's exact test), Q value = 0.36

Table S2267.  Gene #203: 'FAM133B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
FAM133B MUTATED 0 1 3 1
FAM133B WILD-TYPE 112 95 89 185
'FAM133B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.031 (Fisher's exact test), Q value = 0.18

Table S2268.  Gene #203: 'FAM133B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
FAM133B MUTATED 0 0 3 0 1 0 1
FAM133B WILD-TYPE 60 50 46 40 62 125 98

Figure S772.  Get High-res Image Gene #203: 'FAM133B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'FAM133B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.407 (Fisher's exact test), Q value = 0.73

Table S2269.  Gene #203: 'FAM133B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
FAM133B MUTATED 3 1 0 1
FAM133B WILD-TYPE 127 77 68 195
'FAM133B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.766 (Fisher's exact test), Q value = 1

Table S2270.  Gene #203: 'FAM133B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
FAM133B MUTATED 0 2 0 1 1 0 1 0 0
FAM133B WILD-TYPE 40 60 28 79 68 48 42 28 74
'FAM133B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0135 (Fisher's exact test), Q value = 0.11

Table S2271.  Gene #203: 'FAM133B MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
FAM133B MUTATED 0 1 0 3
FAM133B WILD-TYPE 33 30 27 16

Figure S773.  Get High-res Image Gene #203: 'FAM133B MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'FAM133B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.867 (Fisher's exact test), Q value = 1

Table S2272.  Gene #203: 'FAM133B MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
FAM133B MUTATED 3 0 1 0
FAM133B WILD-TYPE 51 10 23 22
'CATSPER1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.134 (Fisher's exact test), Q value = 0.41

Table S2273.  Gene #204: 'CATSPER1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
CATSPER1 MUTATED 3 0 1 2
CATSPER1 WILD-TYPE 43 58 63 41
'CATSPER1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.243 (Fisher's exact test), Q value = 0.57

Table S2274.  Gene #204: 'CATSPER1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
CATSPER1 MUTATED 3 1 2
CATSPER1 WILD-TYPE 48 82 75
'CATSPER1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.323 (Fisher's exact test), Q value = 0.65

Table S2275.  Gene #204: 'CATSPER1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
CATSPER1 MUTATED 9 7 1 0
CATSPER1 WILD-TYPE 169 176 100 20
'CATSPER1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0836 (Fisher's exact test), Q value = 0.31

Table S2276.  Gene #204: 'CATSPER1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
CATSPER1 MUTATED 1 4 8
CATSPER1 WILD-TYPE 86 76 92
'CATSPER1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.614 (Fisher's exact test), Q value = 0.91

Table S2277.  Gene #204: 'CATSPER1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
CATSPER1 MUTATED 2 7 7
CATSPER1 WILD-TYPE 87 153 131
'CATSPER1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.305 (Fisher's exact test), Q value = 0.64

Table S2278.  Gene #204: 'CATSPER1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
CATSPER1 MUTATED 5 8 3
CATSPER1 WILD-TYPE 177 125 69
'CATSPER1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.303 (Fisher's exact test), Q value = 0.63

Table S2279.  Gene #204: 'CATSPER1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
CATSPER1 MUTATED 8 3 2 6
CATSPER1 WILD-TYPE 104 93 90 180
'CATSPER1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.208 (Fisher's exact test), Q value = 0.52

Table S2280.  Gene #204: 'CATSPER1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
CATSPER1 MUTATED 5 2 2 2 3 1 4
CATSPER1 WILD-TYPE 55 48 47 38 60 124 95
'CATSPER1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.563 (Fisher's exact test), Q value = 0.87

Table S2281.  Gene #204: 'CATSPER1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
CATSPER1 MUTATED 7 4 1 7
CATSPER1 WILD-TYPE 123 74 67 189
'CATSPER1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.203 (Fisher's exact test), Q value = 0.51

Table S2282.  Gene #204: 'CATSPER1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
CATSPER1 MUTATED 1 4 2 5 5 1 1 0 0
CATSPER1 WILD-TYPE 39 58 26 75 64 47 42 28 74
'CATSPER1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.761 (Fisher's exact test), Q value = 1

Table S2283.  Gene #204: 'CATSPER1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
CATSPER1 MUTATED 1 1 2 0
CATSPER1 WILD-TYPE 32 30 25 19
'CATSPER1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.488 (Fisher's exact test), Q value = 0.81

Table S2284.  Gene #204: 'CATSPER1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
CATSPER1 MUTATED 1 0 2 1
CATSPER1 WILD-TYPE 53 10 22 21
'GIGYF2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00815 (Fisher's exact test), Q value = 0.084

Table S2285.  Gene #205: 'GIGYF2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
GIGYF2 MUTATED 5 0 1 4
GIGYF2 WILD-TYPE 41 58 63 39

Figure S774.  Get High-res Image Gene #205: 'GIGYF2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'GIGYF2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.355 (Fisher's exact test), Q value = 0.68

Table S2286.  Gene #205: 'GIGYF2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
GIGYF2 MUTATED 4 4 2
GIGYF2 WILD-TYPE 47 79 75
'GIGYF2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00074 (Fisher's exact test), Q value = 0.02

Table S2287.  Gene #205: 'GIGYF2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
GIGYF2 MUTATED 21 3 5 1
GIGYF2 WILD-TYPE 157 180 96 19

Figure S775.  Get High-res Image Gene #205: 'GIGYF2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'GIGYF2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00103 (Fisher's exact test), Q value = 0.025

Table S2288.  Gene #205: 'GIGYF2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
GIGYF2 MUTATED 12 0 8
GIGYF2 WILD-TYPE 75 80 92

Figure S776.  Get High-res Image Gene #205: 'GIGYF2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'GIGYF2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.464 (Fisher's exact test), Q value = 0.79

Table S2289.  Gene #205: 'GIGYF2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
GIGYF2 MUTATED 3 8 10
GIGYF2 WILD-TYPE 86 152 128
'GIGYF2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.696 (Fisher's exact test), Q value = 0.97

Table S2290.  Gene #205: 'GIGYF2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
GIGYF2 MUTATED 12 6 3
GIGYF2 WILD-TYPE 170 127 69
'GIGYF2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.23 (Fisher's exact test), Q value = 0.55

Table S2291.  Gene #205: 'GIGYF2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
GIGYF2 MUTATED 4 10 6 10
GIGYF2 WILD-TYPE 108 86 86 176
'GIGYF2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 2e-05 (Fisher's exact test), Q value = 0.0017

Table S2292.  Gene #205: 'GIGYF2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
GIGYF2 MUTATED 4 2 12 3 0 3 6
GIGYF2 WILD-TYPE 56 48 37 37 63 122 93

Figure S777.  Get High-res Image Gene #205: 'GIGYF2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'GIGYF2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.122 (Fisher's exact test), Q value = 0.39

Table S2293.  Gene #205: 'GIGYF2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
GIGYF2 MUTATED 13 5 1 11
GIGYF2 WILD-TYPE 117 73 67 185
'GIGYF2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0457 (Fisher's exact test), Q value = 0.23

Table S2294.  Gene #205: 'GIGYF2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
GIGYF2 MUTATED 6 6 3 2 6 1 1 3 2
GIGYF2 WILD-TYPE 34 56 25 78 63 47 42 25 72

Figure S778.  Get High-res Image Gene #205: 'GIGYF2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'GIGYF2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.016 (Fisher's exact test), Q value = 0.13

Table S2295.  Gene #205: 'GIGYF2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
GIGYF2 MUTATED 1 1 0 4
GIGYF2 WILD-TYPE 32 30 27 15

Figure S779.  Get High-res Image Gene #205: 'GIGYF2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'GIGYF2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.565 (Fisher's exact test), Q value = 0.87

Table S2296.  Gene #205: 'GIGYF2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
GIGYF2 MUTATED 5 0 1 0
GIGYF2 WILD-TYPE 49 10 23 22
'RBM12 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.786 (Fisher's exact test), Q value = 1

Table S2297.  Gene #206: 'RBM12 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
RBM12 MUTATED 1 0 1 1
RBM12 WILD-TYPE 45 58 63 42
'RBM12 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.351 (Fisher's exact test), Q value = 0.68

Table S2298.  Gene #206: 'RBM12 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
RBM12 MUTATED 1 0 2
RBM12 WILD-TYPE 50 83 75
'RBM12 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0458 (Fisher's exact test), Q value = 0.23

Table S2299.  Gene #206: 'RBM12 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
RBM12 MUTATED 11 2 2 0
RBM12 WILD-TYPE 167 181 99 20

Figure S780.  Get High-res Image Gene #206: 'RBM12 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'RBM12 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0857 (Fisher's exact test), Q value = 0.32

Table S2300.  Gene #206: 'RBM12 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
RBM12 MUTATED 3 1 8
RBM12 WILD-TYPE 84 79 92
'RBM12 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.499 (Fisher's exact test), Q value = 0.83

Table S2301.  Gene #206: 'RBM12 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
RBM12 MUTATED 4 3 4
RBM12 WILD-TYPE 85 157 134
'RBM12 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.782 (Fisher's exact test), Q value = 1

Table S2302.  Gene #206: 'RBM12 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
RBM12 MUTATED 5 5 1
RBM12 WILD-TYPE 177 128 71
'RBM12 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0778 (Fisher's exact test), Q value = 0.3

Table S2303.  Gene #206: 'RBM12 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
RBM12 MUTATED 2 7 3 3
RBM12 WILD-TYPE 110 89 89 183
'RBM12 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00735 (Fisher's exact test), Q value = 0.079

Table S2304.  Gene #206: 'RBM12 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
RBM12 MUTATED 1 3 4 4 1 1 1
RBM12 WILD-TYPE 59 47 45 36 62 124 98

Figure S781.  Get High-res Image Gene #206: 'RBM12 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'RBM12 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0106 (Fisher's exact test), Q value = 0.099

Table S2305.  Gene #206: 'RBM12 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
RBM12 MUTATED 10 1 0 4
RBM12 WILD-TYPE 120 77 68 192

Figure S782.  Get High-res Image Gene #206: 'RBM12 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'RBM12 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.849 (Fisher's exact test), Q value = 1

Table S2306.  Gene #206: 'RBM12 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
RBM12 MUTATED 1 1 1 5 3 1 1 1 1
RBM12 WILD-TYPE 39 61 27 75 66 47 42 27 73
'RBM12 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2307.  Gene #206: 'RBM12 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
RBM12 MUTATED 1 1 1 1
RBM12 WILD-TYPE 32 30 26 18
'RBM12 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.766 (Fisher's exact test), Q value = 1

Table S2308.  Gene #206: 'RBM12 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
RBM12 MUTATED 3 0 0 1
RBM12 WILD-TYPE 51 10 24 21
'EIF2AK4 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00369 (Fisher's exact test), Q value = 0.055

Table S2309.  Gene #207: 'EIF2AK4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
EIF2AK4 MUTATED 3 0 0 4
EIF2AK4 WILD-TYPE 43 58 64 39

Figure S783.  Get High-res Image Gene #207: 'EIF2AK4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'EIF2AK4 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0215 (Fisher's exact test), Q value = 0.15

Table S2310.  Gene #207: 'EIF2AK4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
EIF2AK4 MUTATED 4 0 3
EIF2AK4 WILD-TYPE 47 83 74

Figure S784.  Get High-res Image Gene #207: 'EIF2AK4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'EIF2AK4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00291 (Fisher's exact test), Q value = 0.048

Table S2311.  Gene #207: 'EIF2AK4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
EIF2AK4 MUTATED 15 2 2 0
EIF2AK4 WILD-TYPE 163 181 99 20

Figure S785.  Get High-res Image Gene #207: 'EIF2AK4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'EIF2AK4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.11 (Fisher's exact test), Q value = 0.37

Table S2312.  Gene #207: 'EIF2AK4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
EIF2AK4 MUTATED 7 1 6
EIF2AK4 WILD-TYPE 80 79 94
'EIF2AK4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00468 (Fisher's exact test), Q value = 0.062

Table S2313.  Gene #207: 'EIF2AK4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
EIF2AK4 MUTATED 1 4 13
EIF2AK4 WILD-TYPE 88 156 125

Figure S786.  Get High-res Image Gene #207: 'EIF2AK4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'EIF2AK4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.535 (Fisher's exact test), Q value = 0.85

Table S2314.  Gene #207: 'EIF2AK4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
EIF2AK4 MUTATED 11 5 2
EIF2AK4 WILD-TYPE 171 128 70
'EIF2AK4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0939 (Fisher's exact test), Q value = 0.34

Table S2315.  Gene #207: 'EIF2AK4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
EIF2AK4 MUTATED 2 6 7 5
EIF2AK4 WILD-TYPE 110 90 85 181
'EIF2AK4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0147 (Fisher's exact test), Q value = 0.12

Table S2316.  Gene #207: 'EIF2AK4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
EIF2AK4 MUTATED 2 2 5 1 4 0 6
EIF2AK4 WILD-TYPE 58 48 44 39 59 125 93

Figure S787.  Get High-res Image Gene #207: 'EIF2AK4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'EIF2AK4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.171 (Fisher's exact test), Q value = 0.47

Table S2317.  Gene #207: 'EIF2AK4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
EIF2AK4 MUTATED 7 5 0 8
EIF2AK4 WILD-TYPE 123 73 68 188
'EIF2AK4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0528 (Fisher's exact test), Q value = 0.25

Table S2318.  Gene #207: 'EIF2AK4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
EIF2AK4 MUTATED 2 6 1 2 7 1 0 0 1
EIF2AK4 WILD-TYPE 38 56 27 78 62 47 43 28 73
'EIF2AK4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.872 (Fisher's exact test), Q value = 1

Table S2319.  Gene #207: 'EIF2AK4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
EIF2AK4 MUTATED 1 1 0 1
EIF2AK4 WILD-TYPE 32 30 27 18
'EIF2AK4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.84 (Fisher's exact test), Q value = 1

Table S2320.  Gene #207: 'EIF2AK4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
EIF2AK4 MUTATED 2 0 0 1
EIF2AK4 WILD-TYPE 52 10 24 21
'PI4K2B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.291 (Fisher's exact test), Q value = 0.62

Table S2321.  Gene #208: 'PI4K2B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
PI4K2B MUTATED 4 8 1 1
PI4K2B WILD-TYPE 174 175 100 19
'PI4K2B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.296 (Fisher's exact test), Q value = 0.62

Table S2322.  Gene #208: 'PI4K2B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
PI4K2B MUTATED 2 6 4
PI4K2B WILD-TYPE 85 74 96
'PI4K2B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.359 (Fisher's exact test), Q value = 0.69

Table S2323.  Gene #208: 'PI4K2B MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
PI4K2B MUTATED 4 5 2
PI4K2B WILD-TYPE 85 155 136
'PI4K2B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.559 (Fisher's exact test), Q value = 0.87

Table S2324.  Gene #208: 'PI4K2B MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
PI4K2B MUTATED 7 3 1
PI4K2B WILD-TYPE 175 130 71
'PI4K2B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0164 (Fisher's exact test), Q value = 0.13

Table S2325.  Gene #208: 'PI4K2B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
PI4K2B MUTATED 8 1 3 2
PI4K2B WILD-TYPE 104 95 89 184

Figure S788.  Get High-res Image Gene #208: 'PI4K2B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'PI4K2B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0266 (Fisher's exact test), Q value = 0.17

Table S2326.  Gene #208: 'PI4K2B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
PI4K2B MUTATED 5 1 2 2 2 0 2
PI4K2B WILD-TYPE 55 49 47 38 61 125 97

Figure S789.  Get High-res Image Gene #208: 'PI4K2B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'PI4K2B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0796 (Fisher's exact test), Q value = 0.3

Table S2327.  Gene #208: 'PI4K2B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
PI4K2B MUTATED 7 2 3 2
PI4K2B WILD-TYPE 123 76 65 194
'PI4K2B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00454 (Fisher's exact test), Q value = 0.061

Table S2328.  Gene #208: 'PI4K2B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
PI4K2B MUTATED 1 2 4 1 2 0 4 0 0
PI4K2B WILD-TYPE 39 60 24 79 67 48 39 28 74

Figure S790.  Get High-res Image Gene #208: 'PI4K2B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'PI4K2B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.782 (Fisher's exact test), Q value = 1

Table S2329.  Gene #208: 'PI4K2B MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
PI4K2B MUTATED 1 0 1 1
PI4K2B WILD-TYPE 32 31 26 18
'PI4K2B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.449 (Fisher's exact test), Q value = 0.77

Table S2330.  Gene #208: 'PI4K2B MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
PI4K2B MUTATED 1 0 2 0
PI4K2B WILD-TYPE 53 10 22 22
'HIPK2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.122 (Fisher's exact test), Q value = 0.39

Table S2331.  Gene #209: 'HIPK2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
HIPK2 MUTATED 2 0 0 1
HIPK2 WILD-TYPE 44 58 64 42
'HIPK2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0132 (Fisher's exact test), Q value = 0.11

Table S2332.  Gene #209: 'HIPK2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
HIPK2 MUTATED 3 0 0
HIPK2 WILD-TYPE 48 83 77

Figure S791.  Get High-res Image Gene #209: 'HIPK2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'HIPK2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.107 (Fisher's exact test), Q value = 0.36

Table S2333.  Gene #209: 'HIPK2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
HIPK2 MUTATED 12 6 5 3
HIPK2 WILD-TYPE 166 177 96 17
'HIPK2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.467 (Fisher's exact test), Q value = 0.79

Table S2334.  Gene #209: 'HIPK2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
HIPK2 MUTATED 8 4 10
HIPK2 WILD-TYPE 79 76 90
'HIPK2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0111 (Fisher's exact test), Q value = 0.1

Table S2335.  Gene #209: 'HIPK2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
HIPK2 MUTATED 1 7 14
HIPK2 WILD-TYPE 88 153 124

Figure S792.  Get High-res Image Gene #209: 'HIPK2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'HIPK2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.345 (Fisher's exact test), Q value = 0.67

Table S2336.  Gene #209: 'HIPK2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
HIPK2 MUTATED 14 5 3
HIPK2 WILD-TYPE 168 128 69
'HIPK2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.014 (Fisher's exact test), Q value = 0.12

Table S2337.  Gene #209: 'HIPK2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
HIPK2 MUTATED 6 11 5 4
HIPK2 WILD-TYPE 106 85 87 182

Figure S793.  Get High-res Image Gene #209: 'HIPK2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'HIPK2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00015 (Fisher's exact test), Q value = 0.0069

Table S2338.  Gene #209: 'HIPK2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
HIPK2 MUTATED 3 3 9 3 4 0 4
HIPK2 WILD-TYPE 57 47 40 37 59 125 95

Figure S794.  Get High-res Image Gene #209: 'HIPK2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'HIPK2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0125 (Fisher's exact test), Q value = 0.11

Table S2339.  Gene #209: 'HIPK2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
HIPK2 MUTATED 14 5 2 5
HIPK2 WILD-TYPE 116 73 66 191

Figure S795.  Get High-res Image Gene #209: 'HIPK2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'HIPK2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.018 (Fisher's exact test), Q value = 0.13

Table S2340.  Gene #209: 'HIPK2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
HIPK2 MUTATED 7 5 2 1 5 1 3 0 2
HIPK2 WILD-TYPE 33 57 26 79 64 47 40 28 72

Figure S796.  Get High-res Image Gene #209: 'HIPK2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'HIPK2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.348 (Fisher's exact test), Q value = 0.68

Table S2341.  Gene #209: 'HIPK2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
HIPK2 MUTATED 1 2 0 2
HIPK2 WILD-TYPE 32 29 27 17
'HIPK2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.426 (Fisher's exact test), Q value = 0.75

Table S2342.  Gene #209: 'HIPK2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
HIPK2 MUTATED 3 1 0 1
HIPK2 WILD-TYPE 51 9 24 21
'SLC4A10 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.064 (Fisher's exact test), Q value = 0.27

Table S2343.  Gene #210: 'SLC4A10 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
SLC4A10 MUTATED 1 0 0 2
SLC4A10 WILD-TYPE 45 58 64 41
'SLC4A10 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2344.  Gene #210: 'SLC4A10 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
SLC4A10 MUTATED 1 1 1
SLC4A10 WILD-TYPE 50 82 76
'SLC4A10 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0134 (Fisher's exact test), Q value = 0.11

Table S2345.  Gene #210: 'SLC4A10 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
SLC4A10 MUTATED 17 4 6 2
SLC4A10 WILD-TYPE 161 179 95 18

Figure S797.  Get High-res Image Gene #210: 'SLC4A10 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'SLC4A10 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.185 (Fisher's exact test), Q value = 0.49

Table S2346.  Gene #210: 'SLC4A10 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
SLC4A10 MUTATED 8 4 13
SLC4A10 WILD-TYPE 79 76 87
'SLC4A10 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.965 (Fisher's exact test), Q value = 1

Table S2347.  Gene #210: 'SLC4A10 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
SLC4A10 MUTATED 5 11 9
SLC4A10 WILD-TYPE 84 149 129
'SLC4A10 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.683 (Fisher's exact test), Q value = 0.96

Table S2348.  Gene #210: 'SLC4A10 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
SLC4A10 MUTATED 12 10 3
SLC4A10 WILD-TYPE 170 123 69
'SLC4A10 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0545 (Fisher's exact test), Q value = 0.25

Table S2349.  Gene #210: 'SLC4A10 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
SLC4A10 MUTATED 6 9 8 5
SLC4A10 WILD-TYPE 106 87 84 181
'SLC4A10 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-04 (Fisher's exact test), Q value = 0.0052

Table S2350.  Gene #210: 'SLC4A10 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
SLC4A10 MUTATED 5 9 4 0 6 1 3
SLC4A10 WILD-TYPE 55 41 45 40 57 124 96

Figure S798.  Get High-res Image Gene #210: 'SLC4A10 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'SLC4A10 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00921 (Fisher's exact test), Q value = 0.09

Table S2351.  Gene #210: 'SLC4A10 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
SLC4A10 MUTATED 15 6 1 7
SLC4A10 WILD-TYPE 115 72 67 189

Figure S799.  Get High-res Image Gene #210: 'SLC4A10 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'SLC4A10 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00841 (Fisher's exact test), Q value = 0.085

Table S2352.  Gene #210: 'SLC4A10 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
SLC4A10 MUTATED 6 5 6 2 3 3 2 0 2
SLC4A10 WILD-TYPE 34 57 22 78 66 45 41 28 72

Figure S800.  Get High-res Image Gene #210: 'SLC4A10 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'SLC4A10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.703 (Fisher's exact test), Q value = 0.97

Table S2353.  Gene #210: 'SLC4A10 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
SLC4A10 MUTATED 4 2 1 2
SLC4A10 WILD-TYPE 29 29 26 17
'SLC4A10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.359 (Fisher's exact test), Q value = 0.69

Table S2354.  Gene #210: 'SLC4A10 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
SLC4A10 MUTATED 6 1 0 2
SLC4A10 WILD-TYPE 48 9 24 20
'KLHL10 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0244 (Fisher's exact test), Q value = 0.16

Table S2355.  Gene #211: 'KLHL10 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
KLHL10 MUTATED 10 9 0 2
KLHL10 WILD-TYPE 168 174 101 18

Figure S801.  Get High-res Image Gene #211: 'KLHL10 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'KLHL10 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.664 (Fisher's exact test), Q value = 0.95

Table S2356.  Gene #211: 'KLHL10 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
KLHL10 MUTATED 8 5 6
KLHL10 WILD-TYPE 79 75 94
'KLHL10 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.143 (Fisher's exact test), Q value = 0.42

Table S2357.  Gene #211: 'KLHL10 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
KLHL10 MUTATED 3 5 11
KLHL10 WILD-TYPE 86 155 127
'KLHL10 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.15 (Fisher's exact test), Q value = 0.43

Table S2358.  Gene #211: 'KLHL10 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
KLHL10 MUTATED 13 5 1
KLHL10 WILD-TYPE 169 128 71
'KLHL10 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00338 (Fisher's exact test), Q value = 0.053

Table S2359.  Gene #211: 'KLHL10 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
KLHL10 MUTATED 6 6 7 1
KLHL10 WILD-TYPE 106 90 85 185

Figure S802.  Get High-res Image Gene #211: 'KLHL10 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'KLHL10 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S2360.  Gene #211: 'KLHL10 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
KLHL10 MUTATED 4 3 10 0 3 0 0
KLHL10 WILD-TYPE 56 47 39 40 60 125 99

Figure S803.  Get High-res Image Gene #211: 'KLHL10 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'KLHL10 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0283 (Fisher's exact test), Q value = 0.17

Table S2361.  Gene #211: 'KLHL10 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
KLHL10 MUTATED 9 6 3 3
KLHL10 WILD-TYPE 121 72 65 193

Figure S804.  Get High-res Image Gene #211: 'KLHL10 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'KLHL10 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.109 (Fisher's exact test), Q value = 0.37

Table S2362.  Gene #211: 'KLHL10 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
KLHL10 MUTATED 3 6 1 2 4 2 3 0 0
KLHL10 WILD-TYPE 37 56 27 78 65 46 40 28 74
'KLHL10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.118 (Fisher's exact test), Q value = 0.38

Table S2363.  Gene #211: 'KLHL10 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
KLHL10 MUTATED 2 1 0 3
KLHL10 WILD-TYPE 31 30 27 16
'KLHL10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.46 (Fisher's exact test), Q value = 0.79

Table S2364.  Gene #211: 'KLHL10 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
KLHL10 MUTATED 4 1 0 1
KLHL10 WILD-TYPE 50 9 24 21
'LINGO4 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.073 (Fisher's exact test), Q value = 0.29

Table S2365.  Gene #212: 'LINGO4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
LINGO4 MUTATED 2 0 0 2
LINGO4 WILD-TYPE 44 58 64 41
'LINGO4 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00336 (Fisher's exact test), Q value = 0.052

Table S2366.  Gene #212: 'LINGO4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
LINGO4 MUTATED 4 0 0
LINGO4 WILD-TYPE 47 83 77

Figure S805.  Get High-res Image Gene #212: 'LINGO4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'LINGO4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0109 (Fisher's exact test), Q value = 0.1

Table S2367.  Gene #212: 'LINGO4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
LINGO4 MUTATED 9 1 0 0
LINGO4 WILD-TYPE 169 182 101 20

Figure S806.  Get High-res Image Gene #212: 'LINGO4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'LINGO4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.864 (Fisher's exact test), Q value = 1

Table S2368.  Gene #212: 'LINGO4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
LINGO4 MUTATED 1 2 2
LINGO4 WILD-TYPE 86 78 98
'LINGO4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.352 (Fisher's exact test), Q value = 0.68

Table S2369.  Gene #212: 'LINGO4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
LINGO4 MUTATED 3 2 5
LINGO4 WILD-TYPE 86 158 133
'LINGO4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.638 (Fisher's exact test), Q value = 0.93

Table S2370.  Gene #212: 'LINGO4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
LINGO4 MUTATED 4 5 1
LINGO4 WILD-TYPE 178 128 71
'LINGO4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.583 (Fisher's exact test), Q value = 0.89

Table S2371.  Gene #212: 'LINGO4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
LINGO4 MUTATED 1 2 1 6
LINGO4 WILD-TYPE 111 94 91 180
'LINGO4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.061 (Fisher's exact test), Q value = 0.27

Table S2372.  Gene #212: 'LINGO4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
LINGO4 MUTATED 1 0 3 0 0 1 5
LINGO4 WILD-TYPE 59 50 46 40 63 124 94
'LINGO4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.755 (Fisher's exact test), Q value = 1

Table S2373.  Gene #212: 'LINGO4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
LINGO4 MUTATED 3 2 0 4
LINGO4 WILD-TYPE 127 76 68 192
'LINGO4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00809 (Fisher's exact test), Q value = 0.084

Table S2374.  Gene #212: 'LINGO4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
LINGO4 MUTATED 1 1 0 0 5 0 0 2 0
LINGO4 WILD-TYPE 39 61 28 80 64 48 43 26 74

Figure S807.  Get High-res Image Gene #212: 'LINGO4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'MMP13 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00773 (Fisher's exact test), Q value = 0.082

Table S2375.  Gene #213: 'MMP13 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
MMP13 MUTATED 0 0 0 3
MMP13 WILD-TYPE 46 58 64 40

Figure S808.  Get High-res Image Gene #213: 'MMP13 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'MMP13 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.619 (Fisher's exact test), Q value = 0.92

Table S2376.  Gene #213: 'MMP13 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
MMP13 MUTATED 0 1 2
MMP13 WILD-TYPE 51 82 75
'MMP13 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.152 (Fisher's exact test), Q value = 0.44

Table S2377.  Gene #213: 'MMP13 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
MMP13 MUTATED 10 4 1 0
MMP13 WILD-TYPE 168 179 100 20
'MMP13 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.166 (Fisher's exact test), Q value = 0.46

Table S2378.  Gene #213: 'MMP13 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
MMP13 MUTATED 5 1 7
MMP13 WILD-TYPE 82 79 93
'MMP13 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.291 (Fisher's exact test), Q value = 0.62

Table S2379.  Gene #213: 'MMP13 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
MMP13 MUTATED 1 8 6
MMP13 WILD-TYPE 88 152 132
'MMP13 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.146 (Fisher's exact test), Q value = 0.43

Table S2380.  Gene #213: 'MMP13 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
MMP13 MUTATED 8 7 0
MMP13 WILD-TYPE 174 126 72
'MMP13 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0166 (Fisher's exact test), Q value = 0.13

Table S2381.  Gene #213: 'MMP13 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
MMP13 MUTATED 2 7 5 2
MMP13 WILD-TYPE 110 89 87 184

Figure S809.  Get High-res Image Gene #213: 'MMP13 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'MMP13 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00621 (Fisher's exact test), Q value = 0.072

Table S2382.  Gene #213: 'MMP13 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
MMP13 MUTATED 1 4 5 1 2 0 3
MMP13 WILD-TYPE 59 46 44 39 61 125 96

Figure S810.  Get High-res Image Gene #213: 'MMP13 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'MMP13 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0558 (Fisher's exact test), Q value = 0.26

Table S2383.  Gene #213: 'MMP13 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
MMP13 MUTATED 9 3 1 3
MMP13 WILD-TYPE 121 75 67 193
'MMP13 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0124 (Fisher's exact test), Q value = 0.11

Table S2384.  Gene #213: 'MMP13 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
MMP13 MUTATED 0 6 3 1 3 1 2 0 0
MMP13 WILD-TYPE 40 56 25 79 66 47 41 28 74

Figure S811.  Get High-res Image Gene #213: 'MMP13 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'MMP13 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.293 (Fisher's exact test), Q value = 0.62

Table S2385.  Gene #213: 'MMP13 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
MMP13 MUTATED 1 1 2 3
MMP13 WILD-TYPE 32 30 25 16
'MMP13 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.377 (Fisher's exact test), Q value = 0.71

Table S2386.  Gene #213: 'MMP13 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
MMP13 MUTATED 4 0 3 0
MMP13 WILD-TYPE 50 10 21 22
'DNAH12 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00187 (Fisher's exact test), Q value = 0.036

Table S2387.  Gene #214: 'DNAH12 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
DNAH12 MUTATED 5 0 0 2
DNAH12 WILD-TYPE 41 58 64 41

Figure S812.  Get High-res Image Gene #214: 'DNAH12 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'DNAH12 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.015 (Fisher's exact test), Q value = 0.12

Table S2388.  Gene #214: 'DNAH12 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
DNAH12 MUTATED 5 1 1
DNAH12 WILD-TYPE 46 82 76

Figure S813.  Get High-res Image Gene #214: 'DNAH12 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'DNAH12 MUTATION STATUS' versus 'CN_CNMF'

P value = 2e-05 (Fisher's exact test), Q value = 0.0017

Table S2389.  Gene #214: 'DNAH12 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
DNAH12 MUTATED 20 1 2 1
DNAH12 WILD-TYPE 158 182 99 19

Figure S814.  Get High-res Image Gene #214: 'DNAH12 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'DNAH12 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.124 (Fisher's exact test), Q value = 0.39

Table S2390.  Gene #214: 'DNAH12 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
DNAH12 MUTATED 7 2 10
DNAH12 WILD-TYPE 80 78 90
'DNAH12 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.784 (Fisher's exact test), Q value = 1

Table S2391.  Gene #214: 'DNAH12 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
DNAH12 MUTATED 6 8 8
DNAH12 WILD-TYPE 83 152 130
'DNAH12 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.571 (Fisher's exact test), Q value = 0.88

Table S2392.  Gene #214: 'DNAH12 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
DNAH12 MUTATED 9 7 6
DNAH12 WILD-TYPE 173 126 66
'DNAH12 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00289 (Fisher's exact test), Q value = 0.048

Table S2393.  Gene #214: 'DNAH12 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
DNAH12 MUTATED 0 9 7 9
DNAH12 WILD-TYPE 112 87 85 177

Figure S815.  Get High-res Image Gene #214: 'DNAH12 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'DNAH12 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00308 (Fisher's exact test), Q value = 0.05

Table S2394.  Gene #214: 'DNAH12 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
DNAH12 MUTATED 1 5 7 1 3 1 7
DNAH12 WILD-TYPE 59 45 42 39 60 124 92

Figure S816.  Get High-res Image Gene #214: 'DNAH12 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'DNAH12 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.125 (Fisher's exact test), Q value = 0.39

Table S2395.  Gene #214: 'DNAH12 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
DNAH12 MUTATED 7 5 0 13
DNAH12 WILD-TYPE 123 73 68 183
'DNAH12 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0502 (Fisher's exact test), Q value = 0.24

Table S2396.  Gene #214: 'DNAH12 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
DNAH12 MUTATED 6 4 2 3 6 0 0 1 3
DNAH12 WILD-TYPE 34 58 26 77 63 48 43 27 71
'DNAH12 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.665 (Fisher's exact test), Q value = 0.95

Table S2397.  Gene #214: 'DNAH12 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
DNAH12 MUTATED 1 1 1 2
DNAH12 WILD-TYPE 32 30 26 17
'DNAH12 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.633 (Fisher's exact test), Q value = 0.93

Table S2398.  Gene #214: 'DNAH12 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
DNAH12 MUTATED 4 0 0 1
DNAH12 WILD-TYPE 50 10 24 21
'UQCRC2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.86 (Fisher's exact test), Q value = 1

Table S2399.  Gene #215: 'UQCRC2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
UQCRC2 MUTATED 3 4 3 0
UQCRC2 WILD-TYPE 175 179 98 20
'UQCRC2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0987 (Fisher's exact test), Q value = 0.35

Table S2400.  Gene #215: 'UQCRC2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
UQCRC2 MUTATED 0 4 4
UQCRC2 WILD-TYPE 87 76 96
'UQCRC2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.616 (Fisher's exact test), Q value = 0.92

Table S2401.  Gene #215: 'UQCRC2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
UQCRC2 MUTATED 1 2 4
UQCRC2 WILD-TYPE 88 158 134
'UQCRC2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.363 (Fisher's exact test), Q value = 0.69

Table S2402.  Gene #215: 'UQCRC2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
UQCRC2 MUTATED 5 2 0
UQCRC2 WILD-TYPE 177 131 72
'UQCRC2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.209 (Fisher's exact test), Q value = 0.52

Table S2403.  Gene #215: 'UQCRC2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
UQCRC2 MUTATED 3 4 0 3
UQCRC2 WILD-TYPE 109 92 92 183
'UQCRC2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.744 (Fisher's exact test), Q value = 1

Table S2404.  Gene #215: 'UQCRC2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
UQCRC2 MUTATED 1 1 2 1 2 1 2
UQCRC2 WILD-TYPE 59 49 47 39 61 124 97
'UQCRC2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.758 (Fisher's exact test), Q value = 1

Table S2405.  Gene #215: 'UQCRC2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
UQCRC2 MUTATED 4 2 1 3
UQCRC2 WILD-TYPE 126 76 67 193
'UQCRC2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.325 (Fisher's exact test), Q value = 0.65

Table S2406.  Gene #215: 'UQCRC2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
UQCRC2 MUTATED 2 2 2 1 1 0 0 1 1
UQCRC2 WILD-TYPE 38 60 26 79 68 48 43 27 73
'UQCRC2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.63 (Fisher's exact test), Q value = 0.93

Table S2407.  Gene #215: 'UQCRC2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
UQCRC2 MUTATED 0 1 1 1
UQCRC2 WILD-TYPE 33 30 26 18
'UQCRC2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0103 (Fisher's exact test), Q value = 0.097

Table S2408.  Gene #215: 'UQCRC2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
UQCRC2 MUTATED 0 2 1 0
UQCRC2 WILD-TYPE 54 8 23 22

Figure S817.  Get High-res Image Gene #215: 'UQCRC2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

'E2F7 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0067 (Fisher's exact test), Q value = 0.075

Table S2409.  Gene #216: 'E2F7 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
E2F7 MUTATED 4 0 1 5
E2F7 WILD-TYPE 42 58 63 38

Figure S818.  Get High-res Image Gene #216: 'E2F7 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'E2F7 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0394 (Fisher's exact test), Q value = 0.21

Table S2410.  Gene #216: 'E2F7 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
E2F7 MUTATED 6 2 2
E2F7 WILD-TYPE 45 81 75

Figure S819.  Get High-res Image Gene #216: 'E2F7 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'E2F7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00727 (Fisher's exact test), Q value = 0.079

Table S2411.  Gene #216: 'E2F7 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
E2F7 MUTATED 18 4 4 0
E2F7 WILD-TYPE 160 179 97 20

Figure S820.  Get High-res Image Gene #216: 'E2F7 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'E2F7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.421 (Fisher's exact test), Q value = 0.75

Table S2412.  Gene #216: 'E2F7 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
E2F7 MUTATED 3 5 8
E2F7 WILD-TYPE 84 75 92
'E2F7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.676 (Fisher's exact test), Q value = 0.96

Table S2413.  Gene #216: 'E2F7 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
E2F7 MUTATED 3 7 8
E2F7 WILD-TYPE 86 153 130
'E2F7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.857 (Fisher's exact test), Q value = 1

Table S2414.  Gene #216: 'E2F7 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
E2F7 MUTATED 10 5 3
E2F7 WILD-TYPE 172 128 69
'E2F7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.911 (Fisher's exact test), Q value = 1

Table S2415.  Gene #216: 'E2F7 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
E2F7 MUTATED 6 4 6 10
E2F7 WILD-TYPE 106 92 86 176
'E2F7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00316 (Fisher's exact test), Q value = 0.05

Table S2416.  Gene #216: 'E2F7 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
E2F7 MUTATED 2 1 9 1 4 2 7
E2F7 WILD-TYPE 58 49 40 39 59 123 92

Figure S821.  Get High-res Image Gene #216: 'E2F7 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'E2F7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.304 (Fisher's exact test), Q value = 0.63

Table S2417.  Gene #216: 'E2F7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
E2F7 MUTATED 10 3 1 11
E2F7 WILD-TYPE 120 75 67 185
'E2F7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0388 (Fisher's exact test), Q value = 0.21

Table S2418.  Gene #216: 'E2F7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
E2F7 MUTATED 1 4 3 6 8 1 1 1 0
E2F7 WILD-TYPE 39 58 25 74 61 47 42 27 74

Figure S822.  Get High-res Image Gene #216: 'E2F7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'E2F7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0712 (Fisher's exact test), Q value = 0.29

Table S2419.  Gene #216: 'E2F7 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
E2F7 MUTATED 1 0 1 3
E2F7 WILD-TYPE 32 31 26 16
'E2F7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.578 (Fisher's exact test), Q value = 0.88

Table S2420.  Gene #216: 'E2F7 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
E2F7 MUTATED 3 0 2 0
E2F7 WILD-TYPE 51 10 22 22
'FHOD3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00404 (Fisher's exact test), Q value = 0.058

Table S2421.  Gene #217: 'FHOD3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
FHOD3 MUTATED 5 0 1 5
FHOD3 WILD-TYPE 41 58 63 38

Figure S823.  Get High-res Image Gene #217: 'FHOD3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'FHOD3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0173 (Fisher's exact test), Q value = 0.13

Table S2422.  Gene #217: 'FHOD3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
FHOD3 MUTATED 7 2 2
FHOD3 WILD-TYPE 44 81 75

Figure S824.  Get High-res Image Gene #217: 'FHOD3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'FHOD3 MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S2423.  Gene #217: 'FHOD3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
FHOD3 MUTATED 25 1 3 1
FHOD3 WILD-TYPE 153 182 98 19

Figure S825.  Get High-res Image Gene #217: 'FHOD3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'FHOD3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.13 (Fisher's exact test), Q value = 0.4

Table S2424.  Gene #217: 'FHOD3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
FHOD3 MUTATED 8 2 9
FHOD3 WILD-TYPE 79 78 91
'FHOD3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.149 (Fisher's exact test), Q value = 0.43

Table S2425.  Gene #217: 'FHOD3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
FHOD3 MUTATED 3 10 14
FHOD3 WILD-TYPE 86 150 124
'FHOD3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.252 (Fisher's exact test), Q value = 0.58

Table S2426.  Gene #217: 'FHOD3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
FHOD3 MUTATED 17 7 3
FHOD3 WILD-TYPE 165 126 69
'FHOD3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0348 (Fisher's exact test), Q value = 0.19

Table S2427.  Gene #217: 'FHOD3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
FHOD3 MUTATED 2 10 8 10
FHOD3 WILD-TYPE 110 86 84 176

Figure S826.  Get High-res Image Gene #217: 'FHOD3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'FHOD3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S2428.  Gene #217: 'FHOD3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
FHOD3 MUTATED 4 2 12 0 1 2 9
FHOD3 WILD-TYPE 56 48 37 40 62 123 90

Figure S827.  Get High-res Image Gene #217: 'FHOD3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'FHOD3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.269 (Fisher's exact test), Q value = 0.59

Table S2429.  Gene #217: 'FHOD3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
FHOD3 MUTATED 10 3 1 13
FHOD3 WILD-TYPE 120 75 67 183
'FHOD3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 7e-05 (Fisher's exact test), Q value = 0.0041

Table S2430.  Gene #217: 'FHOD3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
FHOD3 MUTATED 1 6 2 2 13 1 2 0 0
FHOD3 WILD-TYPE 39 56 26 78 56 47 41 28 74

Figure S828.  Get High-res Image Gene #217: 'FHOD3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'FHOD3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00015 (Fisher's exact test), Q value = 0.0069

Table S2431.  Gene #217: 'FHOD3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
FHOD3 MUTATED 1 0 0 6
FHOD3 WILD-TYPE 32 31 27 13

Figure S829.  Get High-res Image Gene #217: 'FHOD3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'FHOD3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.547 (Fisher's exact test), Q value = 0.87

Table S2432.  Gene #217: 'FHOD3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
FHOD3 MUTATED 5 0 2 0
FHOD3 WILD-TYPE 49 10 22 22
'MLL3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00139 (Fisher's exact test), Q value = 0.031

Table S2433.  Gene #218: 'MLL3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
MLL3 MUTATED 7 0 1 3
MLL3 WILD-TYPE 39 58 63 40

Figure S830.  Get High-res Image Gene #218: 'MLL3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'MLL3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0173 (Fisher's exact test), Q value = 0.13

Table S2434.  Gene #218: 'MLL3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
MLL3 MUTATED 7 2 2
MLL3 WILD-TYPE 44 81 75

Figure S831.  Get High-res Image Gene #218: 'MLL3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'MLL3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.028 (Fisher's exact test), Q value = 0.17

Table S2435.  Gene #218: 'MLL3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
MLL3 MUTATED 33 22 9 0
MLL3 WILD-TYPE 145 161 92 20

Figure S832.  Get High-res Image Gene #218: 'MLL3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'MLL3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.662 (Fisher's exact test), Q value = 0.95

Table S2436.  Gene #218: 'MLL3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
MLL3 MUTATED 18 14 23
MLL3 WILD-TYPE 69 66 77
'MLL3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.132 (Fisher's exact test), Q value = 0.4

Table S2437.  Gene #218: 'MLL3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
MLL3 MUTATED 7 27 20
MLL3 WILD-TYPE 82 133 118
'MLL3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.147 (Fisher's exact test), Q value = 0.43

Table S2438.  Gene #218: 'MLL3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
MLL3 MUTATED 29 20 5
MLL3 WILD-TYPE 153 113 67
'MLL3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00419 (Fisher's exact test), Q value = 0.059

Table S2439.  Gene #218: 'MLL3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
MLL3 MUTATED 17 18 18 13
MLL3 WILD-TYPE 95 78 74 173

Figure S833.  Get High-res Image Gene #218: 'MLL3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'MLL3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S2440.  Gene #218: 'MLL3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
MLL3 MUTATED 11 10 15 4 13 4 9
MLL3 WILD-TYPE 49 40 34 36 50 121 90

Figure S834.  Get High-res Image Gene #218: 'MLL3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'MLL3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00064 (Fisher's exact test), Q value = 0.018

Table S2441.  Gene #218: 'MLL3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
MLL3 MUTATED 27 17 5 16
MLL3 WILD-TYPE 103 61 63 180

Figure S835.  Get High-res Image Gene #218: 'MLL3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'MLL3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00042 (Fisher's exact test), Q value = 0.014

Table S2442.  Gene #218: 'MLL3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
MLL3 MUTATED 9 17 3 8 15 2 6 2 3
MLL3 WILD-TYPE 31 45 25 72 54 46 37 26 71

Figure S836.  Get High-res Image Gene #218: 'MLL3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'MLL3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.327 (Fisher's exact test), Q value = 0.66

Table S2443.  Gene #218: 'MLL3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
MLL3 MUTATED 7 3 2 4
MLL3 WILD-TYPE 26 28 25 15
'MLL3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.531 (Fisher's exact test), Q value = 0.85

Table S2444.  Gene #218: 'MLL3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
MLL3 MUTATED 11 1 2 2
MLL3 WILD-TYPE 43 9 22 20
'SCD5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.756 (Fisher's exact test), Q value = 1

Table S2445.  Gene #219: 'SCD5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
SCD5 MUTATED 4 2 2 0
SCD5 WILD-TYPE 174 181 99 20
'SCD5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.877 (Fisher's exact test), Q value = 1

Table S2446.  Gene #219: 'SCD5 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
SCD5 MUTATED 2 1 3
SCD5 WILD-TYPE 85 79 97
'SCD5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.241 (Fisher's exact test), Q value = 0.56

Table S2447.  Gene #219: 'SCD5 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
SCD5 MUTATED 0 2 4
SCD5 WILD-TYPE 89 158 134
'SCD5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.168 (Fisher's exact test), Q value = 0.46

Table S2448.  Gene #219: 'SCD5 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
SCD5 MUTATED 2 1 3
SCD5 WILD-TYPE 180 132 69
'SCD5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.559 (Fisher's exact test), Q value = 0.87

Table S2449.  Gene #219: 'SCD5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
SCD5 MUTATED 1 3 2 2
SCD5 WILD-TYPE 111 93 90 184
'SCD5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0229 (Fisher's exact test), Q value = 0.15

Table S2450.  Gene #219: 'SCD5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
SCD5 MUTATED 0 2 3 1 0 0 2
SCD5 WILD-TYPE 60 48 46 39 63 125 97

Figure S837.  Get High-res Image Gene #219: 'SCD5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'SCD5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.592 (Fisher's exact test), Q value = 0.9

Table S2451.  Gene #219: 'SCD5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
SCD5 MUTATED 3 1 2 2
SCD5 WILD-TYPE 127 77 66 194
'SCD5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.208 (Fisher's exact test), Q value = 0.51

Table S2452.  Gene #219: 'SCD5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
SCD5 MUTATED 0 1 1 2 1 0 3 0 0
SCD5 WILD-TYPE 40 61 27 78 68 48 40 28 74
'DDX23 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0273 (Fisher's exact test), Q value = 0.17

Table S2453.  Gene #220: 'DDX23 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
DDX23 MUTATED 3 0 0 2
DDX23 WILD-TYPE 43 58 64 41

Figure S838.  Get High-res Image Gene #220: 'DDX23 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'DDX23 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.254 (Fisher's exact test), Q value = 0.58

Table S2454.  Gene #220: 'DDX23 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
DDX23 MUTATED 3 1 1
DDX23 WILD-TYPE 48 82 76
'DDX23 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.244 (Fisher's exact test), Q value = 0.57

Table S2455.  Gene #220: 'DDX23 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
DDX23 MUTATED 12 5 3 0
DDX23 WILD-TYPE 166 178 98 20
'DDX23 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.901 (Fisher's exact test), Q value = 1

Table S2456.  Gene #220: 'DDX23 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
DDX23 MUTATED 5 4 7
DDX23 WILD-TYPE 82 76 93
'DDX23 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00415 (Fisher's exact test), Q value = 0.059

Table S2457.  Gene #220: 'DDX23 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
DDX23 MUTATED 1 4 13
DDX23 WILD-TYPE 88 156 125

Figure S839.  Get High-res Image Gene #220: 'DDX23 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'DDX23 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.311 (Fisher's exact test), Q value = 0.64

Table S2458.  Gene #220: 'DDX23 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
DDX23 MUTATED 11 6 1
DDX23 WILD-TYPE 171 127 71
'DDX23 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.449 (Fisher's exact test), Q value = 0.77

Table S2459.  Gene #220: 'DDX23 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
DDX23 MUTATED 5 6 5 5
DDX23 WILD-TYPE 107 90 87 181
'DDX23 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0783 (Fisher's exact test), Q value = 0.3

Table S2460.  Gene #220: 'DDX23 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
DDX23 MUTATED 1 4 4 4 3 2 3
DDX23 WILD-TYPE 59 46 45 36 60 123 96
'DDX23 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0703 (Fisher's exact test), Q value = 0.29

Table S2461.  Gene #220: 'DDX23 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
DDX23 MUTATED 9 3 3 3
DDX23 WILD-TYPE 121 75 65 193
'DDX23 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.663 (Fisher's exact test), Q value = 0.95

Table S2462.  Gene #220: 'DDX23 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
DDX23 MUTATED 3 3 1 2 3 2 3 0 1
DDX23 WILD-TYPE 37 59 27 78 66 46 40 28 73
'DDX23 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.23 (Fisher's exact test), Q value = 0.55

Table S2463.  Gene #220: 'DDX23 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
DDX23 MUTATED 3 0 1 2
DDX23 WILD-TYPE 30 31 26 17
'DDX23 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.305 (Fisher's exact test), Q value = 0.64

Table S2464.  Gene #220: 'DDX23 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
DDX23 MUTATED 2 0 1 3
DDX23 WILD-TYPE 52 10 23 19
'THOC5 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0161 (Fisher's exact test), Q value = 0.13

Table S2465.  Gene #221: 'THOC5 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
THOC5 MUTATED 1 0 0 3
THOC5 WILD-TYPE 45 58 64 40

Figure S840.  Get High-res Image Gene #221: 'THOC5 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'THOC5 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.555 (Fisher's exact test), Q value = 0.87

Table S2466.  Gene #221: 'THOC5 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
THOC5 MUTATED 2 1 1
THOC5 WILD-TYPE 49 82 76
'THOC5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00088 (Fisher's exact test), Q value = 0.022

Table S2467.  Gene #221: 'THOC5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
THOC5 MUTATED 12 0 3 1
THOC5 WILD-TYPE 166 183 98 19

Figure S841.  Get High-res Image Gene #221: 'THOC5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'THOC5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.18 (Fisher's exact test), Q value = 0.48

Table S2468.  Gene #221: 'THOC5 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
THOC5 MUTATED 4 1 7
THOC5 WILD-TYPE 83 79 93
'THOC5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2469.  Gene #221: 'THOC5 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
THOC5 MUTATED 2 4 4
THOC5 WILD-TYPE 87 156 134
'THOC5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.583 (Fisher's exact test), Q value = 0.89

Table S2470.  Gene #221: 'THOC5 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
THOC5 MUTATED 4 3 3
THOC5 WILD-TYPE 178 130 69
'THOC5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0291 (Fisher's exact test), Q value = 0.17

Table S2471.  Gene #221: 'THOC5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
THOC5 MUTATED 1 8 2 5
THOC5 WILD-TYPE 111 88 90 181

Figure S842.  Get High-res Image Gene #221: 'THOC5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'THOC5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00391 (Fisher's exact test), Q value = 0.057

Table S2472.  Gene #221: 'THOC5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
THOC5 MUTATED 1 1 6 3 0 1 4
THOC5 WILD-TYPE 59 49 43 37 63 124 95

Figure S843.  Get High-res Image Gene #221: 'THOC5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'THOC5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.111 (Fisher's exact test), Q value = 0.37

Table S2473.  Gene #221: 'THOC5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
THOC5 MUTATED 8 2 0 5
THOC5 WILD-TYPE 122 76 68 191
'THOC5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.176 (Fisher's exact test), Q value = 0.47

Table S2474.  Gene #221: 'THOC5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
THOC5 MUTATED 3 1 2 2 5 0 1 0 1
THOC5 WILD-TYPE 37 61 26 78 64 48 42 28 73
'THOC5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.346 (Fisher's exact test), Q value = 0.67

Table S2475.  Gene #221: 'THOC5 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
THOC5 MUTATED 1 2 0 2
THOC5 WILD-TYPE 32 29 27 17
'THOC5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2476.  Gene #221: 'THOC5 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
THOC5 MUTATED 3 0 1 1
THOC5 WILD-TYPE 51 10 23 21
'ADAM28 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.073 (Fisher's exact test), Q value = 0.29

Table S2477.  Gene #222: 'ADAM28 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ADAM28 MUTATED 2 0 0 2
ADAM28 WILD-TYPE 44 58 64 41
'ADAM28 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.556 (Fisher's exact test), Q value = 0.87

Table S2478.  Gene #222: 'ADAM28 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ADAM28 MUTATED 2 1 1
ADAM28 WILD-TYPE 49 82 76
'ADAM28 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.246 (Fisher's exact test), Q value = 0.57

Table S2479.  Gene #222: 'ADAM28 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ADAM28 MUTATED 12 5 3 0
ADAM28 WILD-TYPE 166 178 98 20
'ADAM28 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.653 (Fisher's exact test), Q value = 0.94

Table S2480.  Gene #222: 'ADAM28 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ADAM28 MUTATED 6 3 7
ADAM28 WILD-TYPE 81 77 93
'ADAM28 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.462 (Fisher's exact test), Q value = 0.79

Table S2481.  Gene #222: 'ADAM28 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ADAM28 MUTATED 2 7 8
ADAM28 WILD-TYPE 87 153 130
'ADAM28 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.852 (Fisher's exact test), Q value = 1

Table S2482.  Gene #222: 'ADAM28 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ADAM28 MUTATED 9 6 2
ADAM28 WILD-TYPE 173 127 70
'ADAM28 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.541 (Fisher's exact test), Q value = 0.86

Table S2483.  Gene #222: 'ADAM28 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ADAM28 MUTATED 6 4 5 5
ADAM28 WILD-TYPE 106 92 87 181
'ADAM28 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0262 (Fisher's exact test), Q value = 0.16

Table S2484.  Gene #222: 'ADAM28 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ADAM28 MUTATED 4 4 5 2 1 1 3
ADAM28 WILD-TYPE 56 46 44 38 62 124 96

Figure S844.  Get High-res Image Gene #222: 'ADAM28 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ADAM28 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.666 (Fisher's exact test), Q value = 0.95

Table S2485.  Gene #222: 'ADAM28 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ADAM28 MUTATED 7 4 2 6
ADAM28 WILD-TYPE 123 74 66 190
'ADAM28 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.26 (Fisher's exact test), Q value = 0.58

Table S2486.  Gene #222: 'ADAM28 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ADAM28 MUTATED 2 3 0 6 5 0 2 0 1
ADAM28 WILD-TYPE 38 59 28 74 64 48 41 28 73
'ADAM28 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.761 (Fisher's exact test), Q value = 1

Table S2487.  Gene #222: 'ADAM28 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
ADAM28 MUTATED 1 1 2 0
ADAM28 WILD-TYPE 32 30 25 19
'ADAM28 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.67 (Fisher's exact test), Q value = 0.95

Table S2488.  Gene #222: 'ADAM28 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
ADAM28 MUTATED 2 0 2 0
ADAM28 WILD-TYPE 52 10 22 22
'SMAD3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.136 (Fisher's exact test), Q value = 0.41

Table S2489.  Gene #223: 'SMAD3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
SMAD3 MUTATED 3 0 2 3
SMAD3 WILD-TYPE 43 58 62 40
'SMAD3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.597 (Fisher's exact test), Q value = 0.9

Table S2490.  Gene #223: 'SMAD3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
SMAD3 MUTATED 3 3 2
SMAD3 WILD-TYPE 48 80 75
'SMAD3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.474 (Fisher's exact test), Q value = 0.8

Table S2491.  Gene #223: 'SMAD3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
SMAD3 MUTATED 9 4 4 0
SMAD3 WILD-TYPE 169 179 97 20
'SMAD3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.794 (Fisher's exact test), Q value = 1

Table S2492.  Gene #223: 'SMAD3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
SMAD3 MUTATED 4 4 3
SMAD3 WILD-TYPE 83 76 97
'SMAD3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.898 (Fisher's exact test), Q value = 1

Table S2493.  Gene #223: 'SMAD3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
SMAD3 MUTATED 4 7 5
SMAD3 WILD-TYPE 85 153 133
'SMAD3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.173 (Fisher's exact test), Q value = 0.47

Table S2494.  Gene #223: 'SMAD3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
SMAD3 MUTATED 4 8 4
SMAD3 WILD-TYPE 178 125 68
'SMAD3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.596 (Fisher's exact test), Q value = 0.9

Table S2495.  Gene #223: 'SMAD3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
SMAD3 MUTATED 3 4 2 10
SMAD3 WILD-TYPE 109 92 90 176
'SMAD3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.639 (Fisher's exact test), Q value = 0.93

Table S2496.  Gene #223: 'SMAD3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
SMAD3 MUTATED 4 1 3 0 2 4 5
SMAD3 WILD-TYPE 56 49 46 40 61 121 94
'SMAD3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.571 (Fisher's exact test), Q value = 0.88

Table S2497.  Gene #223: 'SMAD3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
SMAD3 MUTATED 5 1 3 10
SMAD3 WILD-TYPE 125 77 65 186
'SMAD3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.302 (Fisher's exact test), Q value = 0.63

Table S2498.  Gene #223: 'SMAD3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
SMAD3 MUTATED 0 1 1 4 7 1 2 0 3
SMAD3 WILD-TYPE 40 61 27 76 62 47 41 28 71
'SGK269 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00765 (Fisher's exact test), Q value = 0.082

Table S2499.  Gene #224: 'SGK269 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
SGK269 MUTATED 0 0 0 3
SGK269 WILD-TYPE 46 58 64 40

Figure S845.  Get High-res Image Gene #224: 'SGK269 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'SGK269 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.349 (Fisher's exact test), Q value = 0.68

Table S2500.  Gene #224: 'SGK269 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
SGK269 MUTATED 1 0 2
SGK269 WILD-TYPE 50 83 75
'SGK269 MUTATION STATUS' versus 'CN_CNMF'

P value = 7e-05 (Fisher's exact test), Q value = 0.0041

Table S2501.  Gene #224: 'SGK269 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
SGK269 MUTATED 19 4 0 0
SGK269 WILD-TYPE 159 179 101 20

Figure S846.  Get High-res Image Gene #224: 'SGK269 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'SGK269 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.103 (Fisher's exact test), Q value = 0.36

Table S2502.  Gene #224: 'SGK269 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
SGK269 MUTATED 5 3 12
SGK269 WILD-TYPE 82 77 88
'SGK269 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.165 (Fisher's exact test), Q value = 0.46

Table S2503.  Gene #224: 'SGK269 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
SGK269 MUTATED 4 5 11
SGK269 WILD-TYPE 85 155 127
'SGK269 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.826 (Fisher's exact test), Q value = 1

Table S2504.  Gene #224: 'SGK269 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
SGK269 MUTATED 11 6 3
SGK269 WILD-TYPE 171 127 69
'SGK269 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00672 (Fisher's exact test), Q value = 0.075

Table S2505.  Gene #224: 'SGK269 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
SGK269 MUTATED 4 10 6 3
SGK269 WILD-TYPE 108 86 86 183

Figure S847.  Get High-res Image Gene #224: 'SGK269 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'SGK269 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S2506.  Gene #224: 'SGK269 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
SGK269 MUTATED 4 4 11 0 2 0 2
SGK269 WILD-TYPE 56 46 38 40 61 125 97

Figure S848.  Get High-res Image Gene #224: 'SGK269 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'SGK269 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.022 (Fisher's exact test), Q value = 0.15

Table S2507.  Gene #224: 'SGK269 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
SGK269 MUTATED 12 5 1 5
SGK269 WILD-TYPE 118 73 67 191

Figure S849.  Get High-res Image Gene #224: 'SGK269 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'SGK269 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0169 (Fisher's exact test), Q value = 0.13

Table S2508.  Gene #224: 'SGK269 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
SGK269 MUTATED 4 5 1 1 7 2 3 0 0
SGK269 WILD-TYPE 36 57 27 79 62 46 40 28 74

Figure S850.  Get High-res Image Gene #224: 'SGK269 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'SGK269 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0692 (Fisher's exact test), Q value = 0.28

Table S2509.  Gene #224: 'SGK269 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
SGK269 MUTATED 1 1 1 4
SGK269 WILD-TYPE 32 30 26 15
'SGK269 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.729 (Fisher's exact test), Q value = 1

Table S2510.  Gene #224: 'SGK269 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
SGK269 MUTATED 3 1 2 1
SGK269 WILD-TYPE 51 9 22 21
'FLT3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0237 (Fisher's exact test), Q value = 0.16

Table S2511.  Gene #225: 'FLT3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
FLT3 MUTATED 2 0 0 3
FLT3 WILD-TYPE 44 58 64 40

Figure S851.  Get High-res Image Gene #225: 'FLT3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'FLT3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.742 (Fisher's exact test), Q value = 1

Table S2512.  Gene #225: 'FLT3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
FLT3 MUTATED 2 2 1
FLT3 WILD-TYPE 49 81 76
'FLT3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.25 (Fisher's exact test), Q value = 0.58

Table S2513.  Gene #225: 'FLT3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
FLT3 MUTATED 14 14 3 0
FLT3 WILD-TYPE 164 169 98 20
'FLT3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0843 (Fisher's exact test), Q value = 0.31

Table S2514.  Gene #225: 'FLT3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
FLT3 MUTATED 6 13 7
FLT3 WILD-TYPE 81 67 93
'FLT3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.858 (Fisher's exact test), Q value = 1

Table S2515.  Gene #225: 'FLT3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
FLT3 MUTATED 6 14 10
FLT3 WILD-TYPE 83 146 128
'FLT3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.135 (Fisher's exact test), Q value = 0.41

Table S2516.  Gene #225: 'FLT3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
FLT3 MUTATED 14 14 2
FLT3 WILD-TYPE 168 119 70
'FLT3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0168 (Fisher's exact test), Q value = 0.13

Table S2517.  Gene #225: 'FLT3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
FLT3 MUTATED 11 6 10 5
FLT3 WILD-TYPE 101 90 82 181

Figure S852.  Get High-res Image Gene #225: 'FLT3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'FLT3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00012 (Fisher's exact test), Q value = 0.0059

Table S2518.  Gene #225: 'FLT3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
FLT3 MUTATED 11 6 3 2 6 1 3
FLT3 WILD-TYPE 49 44 46 38 57 124 96

Figure S853.  Get High-res Image Gene #225: 'FLT3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'FLT3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0549 (Fisher's exact test), Q value = 0.25

Table S2519.  Gene #225: 'FLT3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
FLT3 MUTATED 12 5 8 7
FLT3 WILD-TYPE 118 73 60 189
'FLT3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0068 (Fisher's exact test), Q value = 0.076

Table S2520.  Gene #225: 'FLT3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
FLT3 MUTATED 5 8 3 6 4 1 5 0 0
FLT3 WILD-TYPE 35 54 25 74 65 47 38 28 74

Figure S854.  Get High-res Image Gene #225: 'FLT3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'FLT3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.204 (Fisher's exact test), Q value = 0.51

Table S2521.  Gene #225: 'FLT3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
FLT3 MUTATED 3 2 5 0
FLT3 WILD-TYPE 30 29 22 19
'FLT3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0729 (Fisher's exact test), Q value = 0.29

Table S2522.  Gene #225: 'FLT3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
FLT3 MUTATED 3 3 3 1
FLT3 WILD-TYPE 51 7 21 21
'RNF128 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00017 (Fisher's exact test), Q value = 0.0075

Table S2523.  Gene #226: 'RNF128 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
RNF128 MUTATED 14 1 0 0
RNF128 WILD-TYPE 164 182 101 20

Figure S855.  Get High-res Image Gene #226: 'RNF128 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'RNF128 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0276 (Fisher's exact test), Q value = 0.17

Table S2524.  Gene #226: 'RNF128 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
RNF128 MUTATED 3 1 10
RNF128 WILD-TYPE 84 79 90

Figure S856.  Get High-res Image Gene #226: 'RNF128 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'RNF128 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.482 (Fisher's exact test), Q value = 0.81

Table S2525.  Gene #226: 'RNF128 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
RNF128 MUTATED 1 6 6
RNF128 WILD-TYPE 88 154 132
'RNF128 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.756 (Fisher's exact test), Q value = 1

Table S2526.  Gene #226: 'RNF128 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
RNF128 MUTATED 5 6 2
RNF128 WILD-TYPE 177 127 70
'RNF128 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00021 (Fisher's exact test), Q value = 0.0086

Table S2527.  Gene #226: 'RNF128 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
RNF128 MUTATED 2 7 6 0
RNF128 WILD-TYPE 110 89 86 186

Figure S857.  Get High-res Image Gene #226: 'RNF128 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'RNF128 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S2528.  Gene #226: 'RNF128 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
RNF128 MUTATED 1 2 9 2 0 0 1
RNF128 WILD-TYPE 59 48 40 38 63 125 98

Figure S858.  Get High-res Image Gene #226: 'RNF128 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'RNF128 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.638 (Fisher's exact test), Q value = 0.93

Table S2529.  Gene #226: 'RNF128 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
RNF128 MUTATED 6 3 1 5
RNF128 WILD-TYPE 124 75 67 191
'RNF128 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.668 (Fisher's exact test), Q value = 0.95

Table S2530.  Gene #226: 'RNF128 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
RNF128 MUTATED 2 2 1 3 4 0 2 0 1
RNF128 WILD-TYPE 38 60 27 77 65 48 41 28 73
'RNF128 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.137 (Fisher's exact test), Q value = 0.41

Table S2531.  Gene #226: 'RNF128 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
RNF128 MUTATED 1 0 0 2
RNF128 WILD-TYPE 32 31 27 17
'RNF128 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.565 (Fisher's exact test), Q value = 0.87

Table S2532.  Gene #226: 'RNF128 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
RNF128 MUTATED 3 0 0 0
RNF128 WILD-TYPE 51 10 24 22
'MOBKL2B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.533 (Fisher's exact test), Q value = 0.85

Table S2533.  Gene #227: 'MOBKL2B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
MOBKL2B MUTATED 4 4 0 0
MOBKL2B WILD-TYPE 174 179 101 20
'MOBKL2B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.82 (Fisher's exact test), Q value = 1

Table S2534.  Gene #227: 'MOBKL2B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
MOBKL2B MUTATED 2 2 4
MOBKL2B WILD-TYPE 85 78 96
'MOBKL2B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.818 (Fisher's exact test), Q value = 1

Table S2535.  Gene #227: 'MOBKL2B MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
MOBKL2B MUTATED 2 4 2
MOBKL2B WILD-TYPE 87 156 136
'MOBKL2B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.895 (Fisher's exact test), Q value = 1

Table S2536.  Gene #227: 'MOBKL2B MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
MOBKL2B MUTATED 5 2 1
MOBKL2B WILD-TYPE 177 131 71
'MOBKL2B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0316 (Fisher's exact test), Q value = 0.18

Table S2537.  Gene #227: 'MOBKL2B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
MOBKL2B MUTATED 3 3 3 0
MOBKL2B WILD-TYPE 109 93 89 186

Figure S859.  Get High-res Image Gene #227: 'MOBKL2B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'MOBKL2B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00058 (Fisher's exact test), Q value = 0.017

Table S2538.  Gene #227: 'MOBKL2B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
MOBKL2B MUTATED 2 5 1 0 1 0 0
MOBKL2B WILD-TYPE 58 45 48 40 62 125 99

Figure S860.  Get High-res Image Gene #227: 'MOBKL2B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'MOBKL2B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0141 (Fisher's exact test), Q value = 0.12

Table S2539.  Gene #227: 'MOBKL2B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
MOBKL2B MUTATED 7 1 0 1
MOBKL2B WILD-TYPE 123 77 68 195

Figure S861.  Get High-res Image Gene #227: 'MOBKL2B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'MOBKL2B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.3 (Fisher's exact test), Q value = 0.63

Table S2540.  Gene #227: 'MOBKL2B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
MOBKL2B MUTATED 2 2 0 2 0 1 2 0 0
MOBKL2B WILD-TYPE 38 60 28 78 69 47 41 28 74
'MOBKL2B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.697 (Fisher's exact test), Q value = 0.97

Table S2541.  Gene #227: 'MOBKL2B MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
MOBKL2B MUTATED 2 1 0 1
MOBKL2B WILD-TYPE 31 30 27 18
'MOBKL2B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.87 (Fisher's exact test), Q value = 1

Table S2542.  Gene #227: 'MOBKL2B MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
MOBKL2B MUTATED 3 0 1 0
MOBKL2B WILD-TYPE 51 10 23 22
'NT5DC3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.419 (Fisher's exact test), Q value = 0.75

Table S2543.  Gene #228: 'NT5DC3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
NT5DC3 MUTATED 8 3 3 0
NT5DC3 WILD-TYPE 170 180 98 20
'NT5DC3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.402 (Fisher's exact test), Q value = 0.73

Table S2544.  Gene #228: 'NT5DC3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
NT5DC3 MUTATED 4 2 7
NT5DC3 WILD-TYPE 83 78 93
'NT5DC3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.319 (Fisher's exact test), Q value = 0.65

Table S2545.  Gene #228: 'NT5DC3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
NT5DC3 MUTATED 3 3 7
NT5DC3 WILD-TYPE 86 157 131
'NT5DC3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.612 (Fisher's exact test), Q value = 0.91

Table S2546.  Gene #228: 'NT5DC3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
NT5DC3 MUTATED 8 3 2
NT5DC3 WILD-TYPE 174 130 70
'NT5DC3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0189 (Fisher's exact test), Q value = 0.14

Table S2547.  Gene #228: 'NT5DC3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
NT5DC3 MUTATED 3 6 4 1
NT5DC3 WILD-TYPE 109 90 88 185

Figure S862.  Get High-res Image Gene #228: 'NT5DC3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'NT5DC3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00103 (Fisher's exact test), Q value = 0.025

Table S2548.  Gene #228: 'NT5DC3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
NT5DC3 MUTATED 1 4 5 2 1 0 1
NT5DC3 WILD-TYPE 59 46 44 38 62 125 98

Figure S863.  Get High-res Image Gene #228: 'NT5DC3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'NT5DC3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.123 (Fisher's exact test), Q value = 0.39

Table S2549.  Gene #228: 'NT5DC3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
NT5DC3 MUTATED 7 3 0 4
NT5DC3 WILD-TYPE 123 75 68 192
'NT5DC3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.126 (Fisher's exact test), Q value = 0.39

Table S2550.  Gene #228: 'NT5DC3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
NT5DC3 MUTATED 2 3 1 1 5 2 0 0 0
NT5DC3 WILD-TYPE 38 59 27 79 64 46 43 28 74
'NT5DC3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00132 (Fisher's exact test), Q value = 0.029

Table S2551.  Gene #228: 'NT5DC3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
NT5DC3 MUTATED 0 0 1 4
NT5DC3 WILD-TYPE 33 31 26 15

Figure S864.  Get High-res Image Gene #228: 'NT5DC3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'NT5DC3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.188 (Fisher's exact test), Q value = 0.49

Table S2552.  Gene #228: 'NT5DC3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
NT5DC3 MUTATED 2 0 3 0
NT5DC3 WILD-TYPE 52 10 21 22
'USP29 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00097 (Fisher's exact test), Q value = 0.024

Table S2553.  Gene #229: 'USP29 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
USP29 MUTATED 5 0 0 4
USP29 WILD-TYPE 41 58 64 39

Figure S865.  Get High-res Image Gene #229: 'USP29 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'USP29 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0957 (Fisher's exact test), Q value = 0.34

Table S2554.  Gene #229: 'USP29 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
USP29 MUTATED 5 2 2
USP29 WILD-TYPE 46 81 75
'USP29 MUTATION STATUS' versus 'CN_CNMF'

P value = 2e-05 (Fisher's exact test), Q value = 0.0017

Table S2555.  Gene #229: 'USP29 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
USP29 MUTATED 19 1 1 1
USP29 WILD-TYPE 159 182 100 19

Figure S866.  Get High-res Image Gene #229: 'USP29 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'USP29 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.106 (Fisher's exact test), Q value = 0.36

Table S2556.  Gene #229: 'USP29 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
USP29 MUTATED 4 1 8
USP29 WILD-TYPE 83 79 92
'USP29 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.211 (Fisher's exact test), Q value = 0.52

Table S2557.  Gene #229: 'USP29 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
USP29 MUTATED 3 4 9
USP29 WILD-TYPE 86 156 129
'USP29 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.891 (Fisher's exact test), Q value = 1

Table S2558.  Gene #229: 'USP29 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
USP29 MUTATED 8 6 2
USP29 WILD-TYPE 174 127 70
'USP29 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.363 (Fisher's exact test), Q value = 0.69

Table S2559.  Gene #229: 'USP29 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
USP29 MUTATED 2 6 5 9
USP29 WILD-TYPE 110 90 87 177
'USP29 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0346 (Fisher's exact test), Q value = 0.19

Table S2560.  Gene #229: 'USP29 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
USP29 MUTATED 3 2 5 3 1 1 7
USP29 WILD-TYPE 57 48 44 37 62 124 92

Figure S867.  Get High-res Image Gene #229: 'USP29 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'USP29 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.625 (Fisher's exact test), Q value = 0.92

Table S2561.  Gene #229: 'USP29 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
USP29 MUTATED 6 3 1 11
USP29 WILD-TYPE 124 75 67 185
'USP29 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.288 (Fisher's exact test), Q value = 0.62

Table S2562.  Gene #229: 'USP29 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
USP29 MUTATED 2 4 2 2 7 1 1 1 1
USP29 WILD-TYPE 38 58 26 78 62 47 42 27 73
'USP29 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00802 (Fisher's exact test), Q value = 0.084

Table S2563.  Gene #229: 'USP29 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
USP29 MUTATED 0 0 1 3
USP29 WILD-TYPE 33 31 26 16

Figure S868.  Get High-res Image Gene #229: 'USP29 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'USP29 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.871 (Fisher's exact test), Q value = 1

Table S2564.  Gene #229: 'USP29 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
USP29 MUTATED 3 0 1 0
USP29 WILD-TYPE 51 10 23 22
'USP34 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.429 (Fisher's exact test), Q value = 0.76

Table S2565.  Gene #230: 'USP34 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
USP34 MUTATED 4 1 3 2
USP34 WILD-TYPE 42 57 61 41
'USP34 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.236 (Fisher's exact test), Q value = 0.56

Table S2566.  Gene #230: 'USP34 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
USP34 MUTATED 5 3 2
USP34 WILD-TYPE 46 80 75
'USP34 MUTATION STATUS' versus 'CN_CNMF'

P value = 5e-05 (Fisher's exact test), Q value = 0.0032

Table S2567.  Gene #230: 'USP34 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
USP34 MUTATED 31 12 2 1
USP34 WILD-TYPE 147 171 99 19

Figure S869.  Get High-res Image Gene #230: 'USP34 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'USP34 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.089 (Fisher's exact test), Q value = 0.32

Table S2568.  Gene #230: 'USP34 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
USP34 MUTATED 11 7 20
USP34 WILD-TYPE 76 73 80
'USP34 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0342 (Fisher's exact test), Q value = 0.19

Table S2569.  Gene #230: 'USP34 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
USP34 MUTATED 5 14 22
USP34 WILD-TYPE 84 146 116

Figure S870.  Get High-res Image Gene #230: 'USP34 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'USP34 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2570.  Gene #230: 'USP34 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
USP34 MUTATED 20 14 7
USP34 WILD-TYPE 162 119 65
'USP34 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00027 (Fisher's exact test), Q value = 0.01

Table S2571.  Gene #230: 'USP34 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
USP34 MUTATED 6 17 15 9
USP34 WILD-TYPE 106 79 77 177

Figure S871.  Get High-res Image Gene #230: 'USP34 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'USP34 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S2572.  Gene #230: 'USP34 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
USP34 MUTATED 2 7 19 5 4 4 6
USP34 WILD-TYPE 58 43 30 35 59 121 93

Figure S872.  Get High-res Image Gene #230: 'USP34 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'USP34 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0424 (Fisher's exact test), Q value = 0.22

Table S2573.  Gene #230: 'USP34 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
USP34 MUTATED 20 9 5 12
USP34 WILD-TYPE 110 69 63 184

Figure S873.  Get High-res Image Gene #230: 'USP34 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'USP34 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00083 (Fisher's exact test), Q value = 0.022

Table S2574.  Gene #230: 'USP34 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
USP34 MUTATED 4 10 1 3 16 1 6 1 4
USP34 WILD-TYPE 36 52 27 77 53 47 37 27 70

Figure S874.  Get High-res Image Gene #230: 'USP34 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'USP34 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00054 (Fisher's exact test), Q value = 0.016

Table S2575.  Gene #230: 'USP34 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
USP34 MUTATED 3 3 1 9
USP34 WILD-TYPE 30 28 26 10

Figure S875.  Get High-res Image Gene #230: 'USP34 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'USP34 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.754 (Fisher's exact test), Q value = 1

Table S2576.  Gene #230: 'USP34 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
USP34 MUTATED 8 1 5 2
USP34 WILD-TYPE 46 9 19 20
'F8 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00311 (Fisher's exact test), Q value = 0.05

Table S2577.  Gene #231: 'F8 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
F8 MUTATED 5 1 0 5
F8 WILD-TYPE 41 57 64 38

Figure S876.  Get High-res Image Gene #231: 'F8 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'F8 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0779 (Fisher's exact test), Q value = 0.3

Table S2578.  Gene #231: 'F8 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
F8 MUTATED 6 3 2
F8 WILD-TYPE 45 80 75
'F8 MUTATION STATUS' versus 'CN_CNMF'

P value = 7e-05 (Fisher's exact test), Q value = 0.0041

Table S2579.  Gene #231: 'F8 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
F8 MUTATED 29 7 5 0
F8 WILD-TYPE 149 176 96 20

Figure S877.  Get High-res Image Gene #231: 'F8 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'F8 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0673 (Fisher's exact test), Q value = 0.28

Table S2580.  Gene #231: 'F8 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
F8 MUTATED 14 4 11
F8 WILD-TYPE 73 76 89
'F8 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.235 (Fisher's exact test), Q value = 0.56

Table S2581.  Gene #231: 'F8 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
F8 MUTATED 4 15 15
F8 WILD-TYPE 85 145 123
'F8 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.772 (Fisher's exact test), Q value = 1

Table S2582.  Gene #231: 'F8 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
F8 MUTATED 18 10 6
F8 WILD-TYPE 164 123 66
'F8 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.101 (Fisher's exact test), Q value = 0.35

Table S2583.  Gene #231: 'F8 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
F8 MUTATED 6 13 10 12
F8 WILD-TYPE 106 83 82 174
'F8 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 5e-05 (Fisher's exact test), Q value = 0.0032

Table S2584.  Gene #231: 'F8 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
F8 MUTATED 5 3 14 2 6 2 9
F8 WILD-TYPE 55 47 35 38 57 123 90

Figure S878.  Get High-res Image Gene #231: 'F8 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'F8 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0448 (Fisher's exact test), Q value = 0.23

Table S2585.  Gene #231: 'F8 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
F8 MUTATED 15 9 1 15
F8 WILD-TYPE 115 69 67 181

Figure S879.  Get High-res Image Gene #231: 'F8 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'F8 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00532 (Fisher's exact test), Q value = 0.066

Table S2586.  Gene #231: 'F8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
F8 MUTATED 4 8 4 6 13 1 2 0 2
F8 WILD-TYPE 36 54 24 74 56 47 41 28 72

Figure S880.  Get High-res Image Gene #231: 'F8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'F8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0143 (Fisher's exact test), Q value = 0.12

Table S2587.  Gene #231: 'F8 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
F8 MUTATED 2 2 0 5
F8 WILD-TYPE 31 29 27 14

Figure S881.  Get High-res Image Gene #231: 'F8 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'F8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.323 (Fisher's exact test), Q value = 0.65

Table S2588.  Gene #231: 'F8 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
F8 MUTATED 6 0 3 0
F8 WILD-TYPE 48 10 21 22
'SMTN MUTATION STATUS' versus 'CN_CNMF'

P value = 6e-05 (Fisher's exact test), Q value = 0.0037

Table S2589.  Gene #232: 'SMTN MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
SMTN MUTATED 15 1 0 0
SMTN WILD-TYPE 163 182 101 20

Figure S882.  Get High-res Image Gene #232: 'SMTN MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'SMTN MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.013 (Fisher's exact test), Q value = 0.11

Table S2590.  Gene #232: 'SMTN MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
SMTN MUTATED 8 0 5
SMTN WILD-TYPE 79 80 95

Figure S883.  Get High-res Image Gene #232: 'SMTN MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'SMTN MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0606 (Fisher's exact test), Q value = 0.27

Table S2591.  Gene #232: 'SMTN MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
SMTN MUTATED 2 3 10
SMTN WILD-TYPE 87 157 128
'SMTN MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.165 (Fisher's exact test), Q value = 0.46

Table S2592.  Gene #232: 'SMTN MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
SMTN MUTATED 11 3 1
SMTN WILD-TYPE 171 130 71
'SMTN MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00125 (Fisher's exact test), Q value = 0.029

Table S2593.  Gene #232: 'SMTN MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
SMTN MUTATED 0 5 8 3
SMTN WILD-TYPE 112 91 84 183

Figure S884.  Get High-res Image Gene #232: 'SMTN MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'SMTN MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S2594.  Gene #232: 'SMTN MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
SMTN MUTATED 0 1 10 1 1 0 3
SMTN WILD-TYPE 60 49 39 39 62 125 96

Figure S885.  Get High-res Image Gene #232: 'SMTN MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'SMTN MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.672 (Fisher's exact test), Q value = 0.95

Table S2595.  Gene #232: 'SMTN MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
SMTN MUTATED 4 4 1 6
SMTN WILD-TYPE 126 74 67 190
'SMTN MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0403 (Fisher's exact test), Q value = 0.21

Table S2596.  Gene #232: 'SMTN MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
SMTN MUTATED 2 5 1 1 5 0 1 0 0
SMTN WILD-TYPE 38 57 27 79 64 48 42 28 74

Figure S886.  Get High-res Image Gene #232: 'SMTN MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'SMTN MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.095 (Fisher's exact test), Q value = 0.34

Table S2597.  Gene #232: 'SMTN MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
SMTN MUTATED 2 0 0 2
SMTN WILD-TYPE 31 31 27 17
'SMTN MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.87 (Fisher's exact test), Q value = 1

Table S2598.  Gene #232: 'SMTN MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
SMTN MUTATED 3 0 1 0
SMTN WILD-TYPE 51 10 23 22
'CARD11 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.606 (Fisher's exact test), Q value = 0.91

Table S2599.  Gene #233: 'CARD11 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
CARD11 MUTATED 3 1 3 2
CARD11 WILD-TYPE 43 57 61 41
'CARD11 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.338 (Fisher's exact test), Q value = 0.67

Table S2600.  Gene #233: 'CARD11 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
CARD11 MUTATED 4 2 3
CARD11 WILD-TYPE 47 81 74
'CARD11 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.379 (Fisher's exact test), Q value = 0.71

Table S2601.  Gene #233: 'CARD11 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
CARD11 MUTATED 22 15 8 3
CARD11 WILD-TYPE 156 168 93 17
'CARD11 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.906 (Fisher's exact test), Q value = 1

Table S2602.  Gene #233: 'CARD11 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
CARD11 MUTATED 12 11 16
CARD11 WILD-TYPE 75 69 84
'CARD11 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.538 (Fisher's exact test), Q value = 0.86

Table S2603.  Gene #233: 'CARD11 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
CARD11 MUTATED 7 20 15
CARD11 WILD-TYPE 82 140 123
'CARD11 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.748 (Fisher's exact test), Q value = 1

Table S2604.  Gene #233: 'CARD11 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
CARD11 MUTATED 20 16 6
CARD11 WILD-TYPE 162 117 66
'CARD11 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.014 (Fisher's exact test), Q value = 0.12

Table S2605.  Gene #233: 'CARD11 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
CARD11 MUTATED 15 14 11 9
CARD11 WILD-TYPE 97 82 81 177

Figure S887.  Get High-res Image Gene #233: 'CARD11 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'CARD11 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00095 (Fisher's exact test), Q value = 0.024

Table S2606.  Gene #233: 'CARD11 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
CARD11 MUTATED 14 7 5 4 8 3 8
CARD11 WILD-TYPE 46 43 44 36 55 122 91

Figure S888.  Get High-res Image Gene #233: 'CARD11 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CARD11 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00577 (Fisher's exact test), Q value = 0.069

Table S2607.  Gene #233: 'CARD11 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
CARD11 MUTATED 20 12 6 10
CARD11 WILD-TYPE 110 66 62 186

Figure S889.  Get High-res Image Gene #233: 'CARD11 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'CARD11 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.32 (Fisher's exact test), Q value = 0.65

Table S2608.  Gene #233: 'CARD11 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
CARD11 MUTATED 9 6 3 9 7 4 5 1 4
CARD11 WILD-TYPE 31 56 25 71 62 44 38 27 70
'CARD11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.959 (Fisher's exact test), Q value = 1

Table S2609.  Gene #233: 'CARD11 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
CARD11 MUTATED 2 3 2 1
CARD11 WILD-TYPE 31 28 25 18
'CARD11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.95 (Fisher's exact test), Q value = 1

Table S2610.  Gene #233: 'CARD11 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
CARD11 MUTATED 5 0 2 1
CARD11 WILD-TYPE 49 10 22 21
'NUP188 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0415 (Fisher's exact test), Q value = 0.21

Table S2611.  Gene #234: 'NUP188 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
NUP188 MUTATED 2 0 1 4
NUP188 WILD-TYPE 44 58 63 39

Figure S890.  Get High-res Image Gene #234: 'NUP188 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'NUP188 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2612.  Gene #234: 'NUP188 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
NUP188 MUTATED 2 3 2
NUP188 WILD-TYPE 49 80 75
'NUP188 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0177 (Fisher's exact test), Q value = 0.13

Table S2613.  Gene #234: 'NUP188 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
NUP188 MUTATED 15 3 5 0
NUP188 WILD-TYPE 163 180 96 20

Figure S891.  Get High-res Image Gene #234: 'NUP188 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'NUP188 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.947 (Fisher's exact test), Q value = 1

Table S2614.  Gene #234: 'NUP188 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
NUP188 MUTATED 6 4 6
NUP188 WILD-TYPE 81 76 94
'NUP188 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.689 (Fisher's exact test), Q value = 0.97

Table S2615.  Gene #234: 'NUP188 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
NUP188 MUTATED 5 6 8
NUP188 WILD-TYPE 84 154 130
'NUP188 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.676 (Fisher's exact test), Q value = 0.96

Table S2616.  Gene #234: 'NUP188 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
NUP188 MUTATED 9 8 2
NUP188 WILD-TYPE 173 125 70
'NUP188 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.574 (Fisher's exact test), Q value = 0.88

Table S2617.  Gene #234: 'NUP188 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
NUP188 MUTATED 4 6 6 7
NUP188 WILD-TYPE 108 90 86 179
'NUP188 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0647 (Fisher's exact test), Q value = 0.28

Table S2618.  Gene #234: 'NUP188 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
NUP188 MUTATED 2 2 7 2 3 2 5
NUP188 WILD-TYPE 58 48 42 38 60 123 94
'NUP188 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.134 (Fisher's exact test), Q value = 0.41

Table S2619.  Gene #234: 'NUP188 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
NUP188 MUTATED 8 5 0 8
NUP188 WILD-TYPE 122 73 68 188
'NUP188 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.092 (Fisher's exact test), Q value = 0.33

Table S2620.  Gene #234: 'NUP188 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
NUP188 MUTATED 3 6 2 2 5 0 0 0 3
NUP188 WILD-TYPE 37 56 26 78 64 48 43 28 71
'NUP188 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00252 (Fisher's exact test), Q value = 0.044

Table S2621.  Gene #234: 'NUP188 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
NUP188 MUTATED 0 4 0 4
NUP188 WILD-TYPE 33 27 27 15

Figure S892.  Get High-res Image Gene #234: 'NUP188 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'NUP188 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.492 (Fisher's exact test), Q value = 0.82

Table S2622.  Gene #234: 'NUP188 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
NUP188 MUTATED 5 1 2 0
NUP188 WILD-TYPE 49 9 22 22
'PTPN3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.121 (Fisher's exact test), Q value = 0.39

Table S2623.  Gene #235: 'PTPN3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
PTPN3 MUTATED 1 1 0 3
PTPN3 WILD-TYPE 45 57 64 40
'PTPN3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.21 (Fisher's exact test), Q value = 0.52

Table S2624.  Gene #235: 'PTPN3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
PTPN3 MUTATED 2 3 0
PTPN3 WILD-TYPE 49 80 77
'PTPN3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.121 (Fisher's exact test), Q value = 0.39

Table S2625.  Gene #235: 'PTPN3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
PTPN3 MUTATED 10 4 1 1
PTPN3 WILD-TYPE 168 179 100 19
'PTPN3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.864 (Fisher's exact test), Q value = 1

Table S2626.  Gene #235: 'PTPN3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
PTPN3 MUTATED 3 3 5
PTPN3 WILD-TYPE 84 77 95
'PTPN3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.525 (Fisher's exact test), Q value = 0.85

Table S2627.  Gene #235: 'PTPN3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
PTPN3 MUTATED 1 6 5
PTPN3 WILD-TYPE 88 154 133
'PTPN3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.209 (Fisher's exact test), Q value = 0.52

Table S2628.  Gene #235: 'PTPN3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
PTPN3 MUTATED 6 6 0
PTPN3 WILD-TYPE 176 127 72
'PTPN3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.675 (Fisher's exact test), Q value = 0.96

Table S2629.  Gene #235: 'PTPN3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
PTPN3 MUTATED 4 5 2 5
PTPN3 WILD-TYPE 108 91 90 181
'PTPN3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.132 (Fisher's exact test), Q value = 0.4

Table S2630.  Gene #235: 'PTPN3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
PTPN3 MUTATED 2 3 4 2 0 2 3
PTPN3 WILD-TYPE 58 47 45 38 63 123 96
'PTPN3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0104 (Fisher's exact test), Q value = 0.098

Table S2631.  Gene #235: 'PTPN3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
PTPN3 MUTATED 10 1 0 4
PTPN3 WILD-TYPE 120 77 68 192

Figure S893.  Get High-res Image Gene #235: 'PTPN3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'PTPN3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.239 (Fisher's exact test), Q value = 0.56

Table S2632.  Gene #235: 'PTPN3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
PTPN3 MUTATED 3 2 1 3 3 3 0 0 0
PTPN3 WILD-TYPE 37 60 27 77 66 45 43 28 74
'PTPN3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.06 (Fisher's exact test), Q value = 0.27

Table S2633.  Gene #235: 'PTPN3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
PTPN3 MUTATED 0 0 1 2
PTPN3 WILD-TYPE 33 31 26 17
'PTPN3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.695 (Fisher's exact test), Q value = 0.97

Table S2634.  Gene #235: 'PTPN3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
PTPN3 MUTATED 1 0 1 1
PTPN3 WILD-TYPE 53 10 23 21
'NBEA MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.111 (Fisher's exact test), Q value = 0.37

Table S2635.  Gene #236: 'NBEA MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
NBEA MUTATED 4 2 2 6
NBEA WILD-TYPE 42 56 62 37
'NBEA MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.827 (Fisher's exact test), Q value = 1

Table S2636.  Gene #236: 'NBEA MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
NBEA MUTATED 4 6 4
NBEA WILD-TYPE 47 77 73
'NBEA MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00167 (Fisher's exact test), Q value = 0.034

Table S2637.  Gene #236: 'NBEA MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
NBEA MUTATED 32 14 6 0
NBEA WILD-TYPE 146 169 95 20

Figure S894.  Get High-res Image Gene #236: 'NBEA MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'NBEA MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0757 (Fisher's exact test), Q value = 0.3

Table S2638.  Gene #236: 'NBEA MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
NBEA MUTATED 14 6 19
NBEA WILD-TYPE 73 74 81
'NBEA MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.11 (Fisher's exact test), Q value = 0.37

Table S2639.  Gene #236: 'NBEA MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
NBEA MUTATED 6 18 22
NBEA WILD-TYPE 83 142 116
'NBEA MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.913 (Fisher's exact test), Q value = 1

Table S2640.  Gene #236: 'NBEA MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
NBEA MUTATED 21 17 8
NBEA WILD-TYPE 161 116 64
'NBEA MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0476 (Fisher's exact test), Q value = 0.23

Table S2641.  Gene #236: 'NBEA MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
NBEA MUTATED 10 12 17 14
NBEA WILD-TYPE 102 84 75 172

Figure S895.  Get High-res Image Gene #236: 'NBEA MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'NBEA MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00121 (Fisher's exact test), Q value = 0.028

Table S2642.  Gene #236: 'NBEA MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
NBEA MUTATED 9 11 12 2 5 7 7
NBEA WILD-TYPE 51 39 37 38 58 118 92

Figure S896.  Get High-res Image Gene #236: 'NBEA MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'NBEA MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00351 (Fisher's exact test), Q value = 0.054

Table S2643.  Gene #236: 'NBEA MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
NBEA MUTATED 21 11 1 17
NBEA WILD-TYPE 109 67 67 179

Figure S897.  Get High-res Image Gene #236: 'NBEA MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'NBEA MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0871 (Fisher's exact test), Q value = 0.32

Table S2644.  Gene #236: 'NBEA MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
NBEA MUTATED 7 10 7 5 6 4 4 3 4
NBEA WILD-TYPE 33 52 21 75 63 44 39 25 70
'NBEA MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.674 (Fisher's exact test), Q value = 0.96

Table S2645.  Gene #236: 'NBEA MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
NBEA MUTATED 4 2 2 3
NBEA WILD-TYPE 29 29 25 16
'NBEA MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2646.  Gene #236: 'NBEA MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
NBEA MUTATED 6 1 2 2
NBEA WILD-TYPE 48 9 22 20
'CNIH4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.371 (Fisher's exact test), Q value = 0.7

Table S2647.  Gene #237: 'CNIH4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
CNIH4 MUTATED 1 2 3 0
CNIH4 WILD-TYPE 177 181 98 20
'CNIH4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.686 (Fisher's exact test), Q value = 0.96

Table S2648.  Gene #237: 'CNIH4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
CNIH4 MUTATED 3 1 2
CNIH4 WILD-TYPE 84 79 98
'CNIH4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.137 (Fisher's exact test), Q value = 0.41

Table S2649.  Gene #237: 'CNIH4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
CNIH4 MUTATED 0 1 4
CNIH4 WILD-TYPE 89 159 134
'CNIH4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.212 (Fisher's exact test), Q value = 0.52

Table S2650.  Gene #237: 'CNIH4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
CNIH4 MUTATED 4 0 1
CNIH4 WILD-TYPE 178 133 71
'CNIH4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00616 (Fisher's exact test), Q value = 0.072

Table S2651.  Gene #237: 'CNIH4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
CNIH4 MUTATED 2 0 4 0
CNIH4 WILD-TYPE 110 96 88 186

Figure S898.  Get High-res Image Gene #237: 'CNIH4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'CNIH4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.014 (Fisher's exact test), Q value = 0.12

Table S2652.  Gene #237: 'CNIH4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
CNIH4 MUTATED 1 0 2 0 3 0 0
CNIH4 WILD-TYPE 59 50 47 40 60 125 99

Figure S899.  Get High-res Image Gene #237: 'CNIH4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CNIH4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0308 (Fisher's exact test), Q value = 0.18

Table S2653.  Gene #237: 'CNIH4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
CNIH4 MUTATED 4 2 0 0
CNIH4 WILD-TYPE 126 76 68 196

Figure S900.  Get High-res Image Gene #237: 'CNIH4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'CNIH4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.679 (Fisher's exact test), Q value = 0.96

Table S2654.  Gene #237: 'CNIH4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
CNIH4 MUTATED 1 1 1 2 1 0 0 0 0
CNIH4 WILD-TYPE 39 61 27 78 68 48 43 28 74
'CNIH4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.546 (Fisher's exact test), Q value = 0.86

Table S2655.  Gene #237: 'CNIH4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
CNIH4 MUTATED 2 2 0 0
CNIH4 WILD-TYPE 31 29 27 19
'CNIH4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.869 (Fisher's exact test), Q value = 1

Table S2656.  Gene #237: 'CNIH4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
CNIH4 MUTATED 3 0 1 0
CNIH4 WILD-TYPE 51 10 23 22
'CD58 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00014 (Fisher's exact test), Q value = 0.0066

Table S2657.  Gene #238: 'CD58 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
CD58 MUTATED 14 1 0 0
CD58 WILD-TYPE 164 182 101 20

Figure S901.  Get High-res Image Gene #238: 'CD58 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'CD58 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00469 (Fisher's exact test), Q value = 0.062

Table S2658.  Gene #238: 'CD58 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
CD58 MUTATED 3 0 10
CD58 WILD-TYPE 84 80 90

Figure S902.  Get High-res Image Gene #238: 'CD58 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'CD58 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.877 (Fisher's exact test), Q value = 1

Table S2659.  Gene #238: 'CD58 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
CD58 MUTATED 2 6 5
CD58 WILD-TYPE 87 154 133
'CD58 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.202 (Fisher's exact test), Q value = 0.51

Table S2660.  Gene #238: 'CD58 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
CD58 MUTATED 7 6 0
CD58 WILD-TYPE 175 127 72
'CD58 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00067 (Fisher's exact test), Q value = 0.019

Table S2661.  Gene #238: 'CD58 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
CD58 MUTATED 0 6 7 2
CD58 WILD-TYPE 112 90 85 184

Figure S903.  Get High-res Image Gene #238: 'CD58 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'CD58 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S2662.  Gene #238: 'CD58 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
CD58 MUTATED 1 1 10 1 1 0 1
CD58 WILD-TYPE 59 49 39 39 62 125 98

Figure S904.  Get High-res Image Gene #238: 'CD58 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CD58 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0086 (Fisher's exact test), Q value = 0.086

Table S2663.  Gene #238: 'CD58 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
CD58 MUTATED 10 2 0 3
CD58 WILD-TYPE 120 76 68 193

Figure S905.  Get High-res Image Gene #238: 'CD58 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'CD58 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.04 (Fisher's exact test), Q value = 0.21

Table S2664.  Gene #238: 'CD58 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
CD58 MUTATED 1 5 1 0 5 0 2 0 1
CD58 WILD-TYPE 39 57 27 80 64 48 41 28 73

Figure S906.  Get High-res Image Gene #238: 'CD58 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'CD58 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00012 (Fisher's exact test), Q value = 0.0059

Table S2665.  Gene #238: 'CD58 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
CD58 MUTATED 1 0 0 6
CD58 WILD-TYPE 32 31 27 13

Figure S907.  Get High-res Image Gene #238: 'CD58 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'CD58 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.548 (Fisher's exact test), Q value = 0.87

Table S2666.  Gene #238: 'CD58 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
CD58 MUTATED 5 0 2 0
CD58 WILD-TYPE 49 10 22 22
'GMCL1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.765 (Fisher's exact test), Q value = 1

Table S2667.  Gene #239: 'GMCL1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
GMCL1 MUTATED 7 4 3 0
GMCL1 WILD-TYPE 171 179 98 20
'GMCL1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.937 (Fisher's exact test), Q value = 1

Table S2668.  Gene #239: 'GMCL1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
GMCL1 MUTATED 5 4 4
GMCL1 WILD-TYPE 82 76 96
'GMCL1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.108 (Fisher's exact test), Q value = 0.36

Table S2669.  Gene #239: 'GMCL1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
GMCL1 MUTATED 1 4 9
GMCL1 WILD-TYPE 88 156 129
'GMCL1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.391 (Fisher's exact test), Q value = 0.72

Table S2670.  Gene #239: 'GMCL1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
GMCL1 MUTATED 9 4 1
GMCL1 WILD-TYPE 173 129 71
'GMCL1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00714 (Fisher's exact test), Q value = 0.078

Table S2671.  Gene #239: 'GMCL1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
GMCL1 MUTATED 4 2 7 1
GMCL1 WILD-TYPE 108 94 85 185

Figure S908.  Get High-res Image Gene #239: 'GMCL1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'GMCL1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00114 (Fisher's exact test), Q value = 0.027

Table S2672.  Gene #239: 'GMCL1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
GMCL1 MUTATED 5 2 2 3 2 0 0
GMCL1 WILD-TYPE 55 48 47 37 61 125 99

Figure S909.  Get High-res Image Gene #239: 'GMCL1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'GMCL1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.316 (Fisher's exact test), Q value = 0.64

Table S2673.  Gene #239: 'GMCL1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
GMCL1 MUTATED 6 2 3 3
GMCL1 WILD-TYPE 124 76 65 193
'GMCL1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.812 (Fisher's exact test), Q value = 1

Table S2674.  Gene #239: 'GMCL1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
GMCL1 MUTATED 1 4 0 3 2 1 2 0 1
GMCL1 WILD-TYPE 39 58 28 77 67 47 41 28 73
'GMCL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.588 (Fisher's exact test), Q value = 0.89

Table S2675.  Gene #239: 'GMCL1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
GMCL1 MUTATED 2 1 3 2
GMCL1 WILD-TYPE 31 30 24 17
'GMCL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.772 (Fisher's exact test), Q value = 1

Table S2676.  Gene #239: 'GMCL1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
GMCL1 MUTATED 5 1 1 1
GMCL1 WILD-TYPE 49 9 23 21
'AKAP3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.161 (Fisher's exact test), Q value = 0.45

Table S2677.  Gene #240: 'AKAP3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
AKAP3 MUTATED 1 1 1 4
AKAP3 WILD-TYPE 45 57 63 39
'AKAP3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2678.  Gene #240: 'AKAP3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
AKAP3 MUTATED 2 3 2
AKAP3 WILD-TYPE 49 80 75
'AKAP3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.034 (Fisher's exact test), Q value = 0.19

Table S2679.  Gene #240: 'AKAP3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
AKAP3 MUTATED 15 4 3 1
AKAP3 WILD-TYPE 163 179 98 19

Figure S910.  Get High-res Image Gene #240: 'AKAP3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'AKAP3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0101 (Fisher's exact test), Q value = 0.096

Table S2680.  Gene #240: 'AKAP3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
AKAP3 MUTATED 6 0 9
AKAP3 WILD-TYPE 81 80 91

Figure S911.  Get High-res Image Gene #240: 'AKAP3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'AKAP3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.325 (Fisher's exact test), Q value = 0.65

Table S2681.  Gene #240: 'AKAP3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
AKAP3 MUTATED 7 6 6
AKAP3 WILD-TYPE 82 154 132
'AKAP3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.318 (Fisher's exact test), Q value = 0.65

Table S2682.  Gene #240: 'AKAP3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
AKAP3 MUTATED 7 6 6
AKAP3 WILD-TYPE 175 127 66
'AKAP3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.014 (Fisher's exact test), Q value = 0.12

Table S2683.  Gene #240: 'AKAP3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
AKAP3 MUTATED 2 11 3 7
AKAP3 WILD-TYPE 110 85 89 179

Figure S912.  Get High-res Image Gene #240: 'AKAP3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'AKAP3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0457 (Fisher's exact test), Q value = 0.23

Table S2684.  Gene #240: 'AKAP3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
AKAP3 MUTATED 1 6 4 3 2 2 5
AKAP3 WILD-TYPE 59 44 45 37 61 123 94

Figure S913.  Get High-res Image Gene #240: 'AKAP3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'AKAP3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.659 (Fisher's exact test), Q value = 0.95

Table S2685.  Gene #240: 'AKAP3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
AKAP3 MUTATED 8 2 2 10
AKAP3 WILD-TYPE 122 76 66 186
'AKAP3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0355 (Fisher's exact test), Q value = 0.2

Table S2686.  Gene #240: 'AKAP3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
AKAP3 MUTATED 4 2 3 1 7 0 2 0 3
AKAP3 WILD-TYPE 36 60 25 79 62 48 41 28 71

Figure S914.  Get High-res Image Gene #240: 'AKAP3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'AKAP3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.327 (Fisher's exact test), Q value = 0.66

Table S2687.  Gene #240: 'AKAP3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
AKAP3 MUTATED 3 1 0 0
AKAP3 WILD-TYPE 30 30 27 19
'AKAP3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.428 (Fisher's exact test), Q value = 0.75

Table S2688.  Gene #240: 'AKAP3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
AKAP3 MUTATED 4 0 0 0
AKAP3 WILD-TYPE 50 10 24 22
'RBMX2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.288 (Fisher's exact test), Q value = 0.62

Table S2689.  Gene #241: 'RBMX2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
RBMX2 MUTATED 8 3 1 0
RBMX2 WILD-TYPE 170 180 100 20
'RBMX2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.506 (Fisher's exact test), Q value = 0.83

Table S2690.  Gene #241: 'RBMX2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
RBMX2 MUTATED 3 2 6
RBMX2 WILD-TYPE 84 78 94
'RBMX2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.489 (Fisher's exact test), Q value = 0.82

Table S2691.  Gene #241: 'RBMX2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
RBMX2 MUTATED 3 3 6
RBMX2 WILD-TYPE 86 157 132
'RBMX2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2692.  Gene #241: 'RBMX2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
RBMX2 MUTATED 6 4 2
RBMX2 WILD-TYPE 176 129 70
'RBMX2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.021 (Fisher's exact test), Q value = 0.15

Table S2693.  Gene #241: 'RBMX2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
RBMX2 MUTATED 2 6 3 1
RBMX2 WILD-TYPE 110 90 89 185

Figure S915.  Get High-res Image Gene #241: 'RBMX2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'RBMX2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00109 (Fisher's exact test), Q value = 0.026

Table S2694.  Gene #241: 'RBMX2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
RBMX2 MUTATED 1 2 6 1 1 0 1
RBMX2 WILD-TYPE 59 48 43 39 62 125 98

Figure S916.  Get High-res Image Gene #241: 'RBMX2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'RBMX2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.771 (Fisher's exact test), Q value = 1

Table S2695.  Gene #241: 'RBMX2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
RBMX2 MUTATED 4 3 1 4
RBMX2 WILD-TYPE 126 75 67 192
'RBMX2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0635 (Fisher's exact test), Q value = 0.27

Table S2696.  Gene #241: 'RBMX2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
RBMX2 MUTATED 1 2 0 0 5 0 3 0 1
RBMX2 WILD-TYPE 39 60 28 80 64 48 40 28 73
'DCBLD1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.514 (Fisher's exact test), Q value = 0.83

Table S2697.  Gene #242: 'DCBLD1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
DCBLD1 MUTATED 4 1 2 0
DCBLD1 WILD-TYPE 174 182 99 20
'DCBLD1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2698.  Gene #242: 'DCBLD1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
DCBLD1 MUTATED 2 2 2
DCBLD1 WILD-TYPE 85 78 98
'DCBLD1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.236 (Fisher's exact test), Q value = 0.56

Table S2699.  Gene #242: 'DCBLD1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
DCBLD1 MUTATED 0 2 4
DCBLD1 WILD-TYPE 89 158 134
'DCBLD1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2700.  Gene #242: 'DCBLD1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
DCBLD1 MUTATED 3 2 1
DCBLD1 WILD-TYPE 179 131 71
'DCBLD1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0928 (Fisher's exact test), Q value = 0.33

Table S2701.  Gene #242: 'DCBLD1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
DCBLD1 MUTATED 3 0 3 1
DCBLD1 WILD-TYPE 109 96 89 185
'DCBLD1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.321 (Fisher's exact test), Q value = 0.65

Table S2702.  Gene #242: 'DCBLD1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
DCBLD1 MUTATED 1 1 1 1 2 0 1
DCBLD1 WILD-TYPE 59 49 48 39 61 125 98
'DCBLD1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.107 (Fisher's exact test), Q value = 0.36

Table S2703.  Gene #242: 'DCBLD1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
DCBLD1 MUTATED 3 3 0 1
DCBLD1 WILD-TYPE 127 75 68 195
'DCBLD1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.156 (Fisher's exact test), Q value = 0.44

Table S2704.  Gene #242: 'DCBLD1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
DCBLD1 MUTATED 1 3 0 0 1 2 0 0 0
DCBLD1 WILD-TYPE 39 59 28 80 68 46 43 28 74
'DCBLD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.548 (Fisher's exact test), Q value = 0.87

Table S2705.  Gene #242: 'DCBLD1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
DCBLD1 MUTATED 2 2 0 0
DCBLD1 WILD-TYPE 31 29 27 19
'DCBLD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.375 (Fisher's exact test), Q value = 0.7

Table S2706.  Gene #242: 'DCBLD1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
DCBLD1 MUTATED 2 1 0 1
DCBLD1 WILD-TYPE 52 9 24 21
'ZNF280B MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.032 (Fisher's exact test), Q value = 0.18

Table S2707.  Gene #243: 'ZNF280B MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ZNF280B MUTATED 3 0 0 1
ZNF280B WILD-TYPE 43 58 64 42

Figure S917.  Get High-res Image Gene #243: 'ZNF280B MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'ZNF280B MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.232 (Fisher's exact test), Q value = 0.55

Table S2708.  Gene #243: 'ZNF280B MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ZNF280B MUTATED 2 2 0
ZNF280B WILD-TYPE 49 81 77
'ZNF280B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0245 (Fisher's exact test), Q value = 0.16

Table S2709.  Gene #243: 'ZNF280B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ZNF280B MUTATED 10 1 2 0
ZNF280B WILD-TYPE 168 182 99 20

Figure S918.  Get High-res Image Gene #243: 'ZNF280B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ZNF280B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.915 (Fisher's exact test), Q value = 1

Table S2710.  Gene #243: 'ZNF280B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ZNF280B MUTATED 3 2 4
ZNF280B WILD-TYPE 84 78 96
'ZNF280B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.116 (Fisher's exact test), Q value = 0.38

Table S2711.  Gene #243: 'ZNF280B MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ZNF280B MUTATED 0 4 6
ZNF280B WILD-TYPE 89 156 132
'ZNF280B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.185 (Fisher's exact test), Q value = 0.49

Table S2712.  Gene #243: 'ZNF280B MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ZNF280B MUTATED 6 1 3
ZNF280B WILD-TYPE 176 132 69
'ZNF280B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.392 (Fisher's exact test), Q value = 0.72

Table S2713.  Gene #243: 'ZNF280B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ZNF280B MUTATED 2 2 5 4
ZNF280B WILD-TYPE 110 94 87 182
'ZNF280B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.521 (Fisher's exact test), Q value = 0.84

Table S2714.  Gene #243: 'ZNF280B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ZNF280B MUTATED 2 1 3 1 2 1 3
ZNF280B WILD-TYPE 58 49 46 39 61 124 96
'ZNF280B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.208 (Fisher's exact test), Q value = 0.52

Table S2715.  Gene #243: 'ZNF280B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ZNF280B MUTATED 6 3 0 4
ZNF280B WILD-TYPE 124 75 68 192
'ZNF280B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.405 (Fisher's exact test), Q value = 0.73

Table S2716.  Gene #243: 'ZNF280B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ZNF280B MUTATED 1 2 2 2 3 2 0 1 0
ZNF280B WILD-TYPE 39 60 26 78 66 46 43 27 74
'ZNF280B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.872 (Fisher's exact test), Q value = 1

Table S2717.  Gene #243: 'ZNF280B MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
ZNF280B MUTATED 1 1 0 1
ZNF280B WILD-TYPE 32 30 27 18
'ZNF280B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.564 (Fisher's exact test), Q value = 0.87

Table S2718.  Gene #243: 'ZNF280B MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
ZNF280B MUTATED 3 0 0 0
ZNF280B WILD-TYPE 51 10 24 22
'NCOA7 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0162 (Fisher's exact test), Q value = 0.13

Table S2719.  Gene #244: 'NCOA7 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
NCOA7 MUTATED 1 0 0 3
NCOA7 WILD-TYPE 45 58 64 40

Figure S919.  Get High-res Image Gene #244: 'NCOA7 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'NCOA7 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0392 (Fisher's exact test), Q value = 0.21

Table S2720.  Gene #244: 'NCOA7 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
NCOA7 MUTATED 3 0 1
NCOA7 WILD-TYPE 48 83 76

Figure S920.  Get High-res Image Gene #244: 'NCOA7 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'NCOA7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.133 (Fisher's exact test), Q value = 0.41

Table S2721.  Gene #244: 'NCOA7 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
NCOA7 MUTATED 11 3 3 0
NCOA7 WILD-TYPE 167 180 98 20
'NCOA7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.523 (Fisher's exact test), Q value = 0.84

Table S2722.  Gene #244: 'NCOA7 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
NCOA7 MUTATED 5 2 6
NCOA7 WILD-TYPE 82 78 94
'NCOA7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.392 (Fisher's exact test), Q value = 0.72

Table S2723.  Gene #244: 'NCOA7 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
NCOA7 MUTATED 2 5 8
NCOA7 WILD-TYPE 87 155 130
'NCOA7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.302 (Fisher's exact test), Q value = 0.63

Table S2724.  Gene #244: 'NCOA7 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
NCOA7 MUTATED 10 4 1
NCOA7 WILD-TYPE 172 129 71
'NCOA7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.148 (Fisher's exact test), Q value = 0.43

Table S2725.  Gene #244: 'NCOA7 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
NCOA7 MUTATED 2 5 6 4
NCOA7 WILD-TYPE 110 91 86 182
'NCOA7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00065 (Fisher's exact test), Q value = 0.018

Table S2726.  Gene #244: 'NCOA7 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
NCOA7 MUTATED 2 3 7 0 2 0 3
NCOA7 WILD-TYPE 58 47 42 40 61 125 96

Figure S921.  Get High-res Image Gene #244: 'NCOA7 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'NCOA7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.394 (Fisher's exact test), Q value = 0.72

Table S2727.  Gene #244: 'NCOA7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
NCOA7 MUTATED 8 2 2 5
NCOA7 WILD-TYPE 122 76 66 191
'NCOA7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0301 (Fisher's exact test), Q value = 0.18

Table S2728.  Gene #244: 'NCOA7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
NCOA7 MUTATED 2 5 1 1 5 0 3 0 0
NCOA7 WILD-TYPE 38 57 27 79 64 48 40 28 74

Figure S922.  Get High-res Image Gene #244: 'NCOA7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'NCOA7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.665 (Fisher's exact test), Q value = 0.95

Table S2729.  Gene #244: 'NCOA7 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
NCOA7 MUTATED 1 1 1 2
NCOA7 WILD-TYPE 32 30 26 17
'NCOA7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.577 (Fisher's exact test), Q value = 0.88

Table S2730.  Gene #244: 'NCOA7 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
NCOA7 MUTATED 3 0 2 0
NCOA7 WILD-TYPE 51 10 22 22
'DENND4A MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00332 (Fisher's exact test), Q value = 0.052

Table S2731.  Gene #245: 'DENND4A MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
DENND4A MUTATED 5 1 0 5
DENND4A WILD-TYPE 41 57 64 38

Figure S923.  Get High-res Image Gene #245: 'DENND4A MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'DENND4A MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.076 (Fisher's exact test), Q value = 0.3

Table S2732.  Gene #245: 'DENND4A MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
DENND4A MUTATED 6 3 2
DENND4A WILD-TYPE 45 80 75
'DENND4A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0067 (Fisher's exact test), Q value = 0.075

Table S2733.  Gene #245: 'DENND4A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
DENND4A MUTATED 18 5 2 1
DENND4A WILD-TYPE 160 178 99 19

Figure S924.  Get High-res Image Gene #245: 'DENND4A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'DENND4A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.28 (Fisher's exact test), Q value = 0.61

Table S2734.  Gene #245: 'DENND4A MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
DENND4A MUTATED 5 2 8
DENND4A WILD-TYPE 82 78 92
'DENND4A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.403 (Fisher's exact test), Q value = 0.73

Table S2735.  Gene #245: 'DENND4A MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
DENND4A MUTATED 4 7 11
DENND4A WILD-TYPE 85 153 127
'DENND4A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.243 (Fisher's exact test), Q value = 0.57

Table S2736.  Gene #245: 'DENND4A MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
DENND4A MUTATED 7 11 4
DENND4A WILD-TYPE 175 122 68
'DENND4A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.156 (Fisher's exact test), Q value = 0.44

Table S2737.  Gene #245: 'DENND4A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
DENND4A MUTATED 3 9 3 11
DENND4A WILD-TYPE 109 87 89 175
'DENND4A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0342 (Fisher's exact test), Q value = 0.19

Table S2738.  Gene #245: 'DENND4A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
DENND4A MUTATED 2 3 7 2 2 2 8
DENND4A WILD-TYPE 58 47 42 38 61 123 91

Figure S925.  Get High-res Image Gene #245: 'DENND4A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'DENND4A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.205 (Fisher's exact test), Q value = 0.51

Table S2739.  Gene #245: 'DENND4A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
DENND4A MUTATED 11 3 1 10
DENND4A WILD-TYPE 119 75 67 186
'DENND4A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0319 (Fisher's exact test), Q value = 0.18

Table S2740.  Gene #245: 'DENND4A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
DENND4A MUTATED 4 3 3 2 9 1 1 1 1
DENND4A WILD-TYPE 36 59 25 78 60 47 42 27 73

Figure S926.  Get High-res Image Gene #245: 'DENND4A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'DENND4A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.629 (Fisher's exact test), Q value = 0.93

Table S2741.  Gene #245: 'DENND4A MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
DENND4A MUTATED 2 2 0 1
DENND4A WILD-TYPE 31 29 27 18
'DENND4A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.522 (Fisher's exact test), Q value = 0.84

Table S2742.  Gene #245: 'DENND4A MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
DENND4A MUTATED 3 1 1 0
DENND4A WILD-TYPE 51 9 23 22
'ALDH2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.206 (Fisher's exact test), Q value = 0.51

Table S2743.  Gene #246: 'ALDH2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ALDH2 MUTATED 7 2 2 1
ALDH2 WILD-TYPE 171 181 99 19
'ALDH2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.915 (Fisher's exact test), Q value = 1

Table S2744.  Gene #246: 'ALDH2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ALDH2 MUTATED 3 2 4
ALDH2 WILD-TYPE 84 78 96
'ALDH2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.763 (Fisher's exact test), Q value = 1

Table S2745.  Gene #246: 'ALDH2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ALDH2 MUTATED 3 3 3
ALDH2 WILD-TYPE 86 157 135
'ALDH2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.404 (Fisher's exact test), Q value = 0.73

Table S2746.  Gene #246: 'ALDH2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ALDH2 MUTATED 5 4 0
ALDH2 WILD-TYPE 177 129 72
'ALDH2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.356 (Fisher's exact test), Q value = 0.68

Table S2747.  Gene #246: 'ALDH2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ALDH2 MUTATED 2 5 2 3
ALDH2 WILD-TYPE 110 91 90 183
'ALDH2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0505 (Fisher's exact test), Q value = 0.24

Table S2748.  Gene #246: 'ALDH2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ALDH2 MUTATED 1 3 3 0 2 0 3
ALDH2 WILD-TYPE 59 47 46 40 61 125 96
'ALDH2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.757 (Fisher's exact test), Q value = 1

Table S2749.  Gene #246: 'ALDH2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ALDH2 MUTATED 5 2 1 4
ALDH2 WILD-TYPE 125 76 67 192
'ALDH2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0398 (Fisher's exact test), Q value = 0.21

Table S2750.  Gene #246: 'ALDH2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ALDH2 MUTATED 1 1 3 1 4 0 2 0 0
ALDH2 WILD-TYPE 39 61 25 79 65 48 41 28 74

Figure S927.  Get High-res Image Gene #246: 'ALDH2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'ALDH2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.783 (Fisher's exact test), Q value = 1

Table S2751.  Gene #246: 'ALDH2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
ALDH2 MUTATED 1 0 1 1
ALDH2 WILD-TYPE 32 31 26 18
'ALDH2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.449 (Fisher's exact test), Q value = 0.78

Table S2752.  Gene #246: 'ALDH2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
ALDH2 MUTATED 1 0 2 0
ALDH2 WILD-TYPE 53 10 22 22
'CCDC160 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.256 (Fisher's exact test), Q value = 0.58

Table S2753.  Gene #247: 'CCDC160 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
CCDC160 MUTATED 2 0 1 2
CCDC160 WILD-TYPE 44 58 63 41
'CCDC160 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.847 (Fisher's exact test), Q value = 1

Table S2754.  Gene #247: 'CCDC160 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
CCDC160 MUTATED 1 3 1
CCDC160 WILD-TYPE 50 80 76
'CCDC160 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00504 (Fisher's exact test), Q value = 0.064

Table S2755.  Gene #247: 'CCDC160 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
CCDC160 MUTATED 10 1 0 0
CCDC160 WILD-TYPE 168 182 101 20

Figure S928.  Get High-res Image Gene #247: 'CCDC160 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'CCDC160 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0125 (Fisher's exact test), Q value = 0.11

Table S2756.  Gene #247: 'CCDC160 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
CCDC160 MUTATED 0 0 5
CCDC160 WILD-TYPE 87 80 95

Figure S929.  Get High-res Image Gene #247: 'CCDC160 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'CCDC160 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.318 (Fisher's exact test), Q value = 0.65

Table S2757.  Gene #247: 'CCDC160 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
CCDC160 MUTATED 1 3 6
CCDC160 WILD-TYPE 88 157 132
'CCDC160 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.639 (Fisher's exact test), Q value = 0.93

Table S2758.  Gene #247: 'CCDC160 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
CCDC160 MUTATED 4 5 1
CCDC160 WILD-TYPE 178 128 71
'CCDC160 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0977 (Fisher's exact test), Q value = 0.34

Table S2759.  Gene #247: 'CCDC160 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
CCDC160 MUTATED 0 4 1 6
CCDC160 WILD-TYPE 112 92 91 180
'CCDC160 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.165 (Fisher's exact test), Q value = 0.46

Table S2760.  Gene #247: 'CCDC160 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
CCDC160 MUTATED 1 1 4 0 0 2 3
CCDC160 WILD-TYPE 59 49 45 40 63 123 96
'CCDC160 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.127 (Fisher's exact test), Q value = 0.4

Table S2761.  Gene #247: 'CCDC160 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
CCDC160 MUTATED 3 0 0 8
CCDC160 WILD-TYPE 127 78 68 188
'CCDC160 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.28 (Fisher's exact test), Q value = 0.61

Table S2762.  Gene #247: 'CCDC160 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
CCDC160 MUTATED 1 0 1 1 4 0 2 1 1
CCDC160 WILD-TYPE 39 62 27 79 65 48 41 27 73
'EFTUD2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.491 (Fisher's exact test), Q value = 0.82

Table S2763.  Gene #248: 'EFTUD2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
EFTUD2 MUTATED 3 1 1 1
EFTUD2 WILD-TYPE 43 57 63 42
'EFTUD2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.337 (Fisher's exact test), Q value = 0.66

Table S2764.  Gene #248: 'EFTUD2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
EFTUD2 MUTATED 3 2 1
EFTUD2 WILD-TYPE 48 81 76
'EFTUD2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.166 (Fisher's exact test), Q value = 0.46

Table S2765.  Gene #248: 'EFTUD2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
EFTUD2 MUTATED 11 4 2 0
EFTUD2 WILD-TYPE 167 179 99 20
'EFTUD2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.638 (Fisher's exact test), Q value = 0.93

Table S2766.  Gene #248: 'EFTUD2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
EFTUD2 MUTATED 5 2 4
EFTUD2 WILD-TYPE 82 78 96
'EFTUD2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.868 (Fisher's exact test), Q value = 1

Table S2767.  Gene #248: 'EFTUD2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
EFTUD2 MUTATED 2 6 4
EFTUD2 WILD-TYPE 87 154 134
'EFTUD2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0623 (Fisher's exact test), Q value = 0.27

Table S2768.  Gene #248: 'EFTUD2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
EFTUD2 MUTATED 2 7 3
EFTUD2 WILD-TYPE 180 126 69
'EFTUD2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.85 (Fisher's exact test), Q value = 1

Table S2769.  Gene #248: 'EFTUD2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
EFTUD2 MUTATED 4 2 4 7
EFTUD2 WILD-TYPE 108 94 88 179
'EFTUD2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.101 (Fisher's exact test), Q value = 0.35

Table S2770.  Gene #248: 'EFTUD2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
EFTUD2 MUTATED 3 1 5 0 1 2 5
EFTUD2 WILD-TYPE 57 49 44 40 62 123 94
'EFTUD2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.815 (Fisher's exact test), Q value = 1

Table S2771.  Gene #248: 'EFTUD2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
EFTUD2 MUTATED 3 3 3 8
EFTUD2 WILD-TYPE 127 75 65 188
'EFTUD2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.597 (Fisher's exact test), Q value = 0.9

Table S2772.  Gene #248: 'EFTUD2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
EFTUD2 MUTATED 0 2 1 4 5 2 2 0 1
EFTUD2 WILD-TYPE 40 60 27 76 64 46 41 28 73
'EFTUD2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0841 (Fisher's exact test), Q value = 0.31

Table S2773.  Gene #248: 'EFTUD2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
EFTUD2 MUTATED 5 0 1 1
EFTUD2 WILD-TYPE 28 31 26 18
'EFTUD2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.777 (Fisher's exact test), Q value = 1

Table S2774.  Gene #248: 'EFTUD2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
EFTUD2 MUTATED 3 0 2 2
EFTUD2 WILD-TYPE 51 10 22 20
'STBD1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.161 (Fisher's exact test), Q value = 0.45

Table S2775.  Gene #249: 'STBD1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
STBD1 MUTATED 1 2 4 0
STBD1 WILD-TYPE 177 181 97 20
'STBD1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.737 (Fisher's exact test), Q value = 1

Table S2776.  Gene #249: 'STBD1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
STBD1 MUTATED 2 2 1
STBD1 WILD-TYPE 85 78 99
'STBD1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2777.  Gene #249: 'STBD1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
STBD1 MUTATED 1 3 2
STBD1 WILD-TYPE 88 157 136
'STBD1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.496 (Fisher's exact test), Q value = 0.82

Table S2778.  Gene #249: 'STBD1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
STBD1 MUTATED 2 2 2
STBD1 WILD-TYPE 180 131 70
'STBD1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.366 (Fisher's exact test), Q value = 0.69

Table S2779.  Gene #249: 'STBD1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
STBD1 MUTATED 3 1 2 1
STBD1 WILD-TYPE 109 95 90 185
'STBD1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.178 (Fisher's exact test), Q value = 0.48

Table S2780.  Gene #249: 'STBD1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
STBD1 MUTATED 3 1 1 0 0 2 0
STBD1 WILD-TYPE 57 49 48 40 63 123 99
'STBD1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.352 (Fisher's exact test), Q value = 0.68

Table S2781.  Gene #249: 'STBD1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
STBD1 MUTATED 4 0 1 2
STBD1 WILD-TYPE 126 78 67 194
'STBD1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.357 (Fisher's exact test), Q value = 0.69

Table S2782.  Gene #249: 'STBD1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
STBD1 MUTATED 1 1 1 2 0 2 0 0 0
STBD1 WILD-TYPE 39 61 27 78 69 46 43 28 74
'TCF7L2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.962 (Fisher's exact test), Q value = 1

Table S2783.  Gene #250: 'TCF7L2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
TCF7L2 MUTATED 3 3 5 3
TCF7L2 WILD-TYPE 43 55 59 40
'TCF7L2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.646 (Fisher's exact test), Q value = 0.93

Table S2784.  Gene #250: 'TCF7L2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
TCF7L2 MUTATED 2 7 5
TCF7L2 WILD-TYPE 49 76 72
'TCF7L2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00727 (Fisher's exact test), Q value = 0.079

Table S2785.  Gene #250: 'TCF7L2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
TCF7L2 MUTATED 19 9 3 4
TCF7L2 WILD-TYPE 159 174 98 16

Figure S930.  Get High-res Image Gene #250: 'TCF7L2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'TCF7L2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.378 (Fisher's exact test), Q value = 0.71

Table S2786.  Gene #250: 'TCF7L2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
TCF7L2 MUTATED 9 5 5
TCF7L2 WILD-TYPE 78 75 95
'TCF7L2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.131 (Fisher's exact test), Q value = 0.4

Table S2787.  Gene #250: 'TCF7L2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
TCF7L2 MUTATED 6 6 13
TCF7L2 WILD-TYPE 83 154 125
'TCF7L2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.605 (Fisher's exact test), Q value = 0.91

Table S2788.  Gene #250: 'TCF7L2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
TCF7L2 MUTATED 14 8 3
TCF7L2 WILD-TYPE 168 125 69
'TCF7L2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.552 (Fisher's exact test), Q value = 0.87

Table S2789.  Gene #250: 'TCF7L2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
TCF7L2 MUTATED 5 9 7 13
TCF7L2 WILD-TYPE 107 87 85 173
'TCF7L2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.188 (Fisher's exact test), Q value = 0.49

Table S2790.  Gene #250: 'TCF7L2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
TCF7L2 MUTATED 2 1 7 5 4 8 7
TCF7L2 WILD-TYPE 58 49 42 35 59 117 92
'TCF7L2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.948 (Fisher's exact test), Q value = 1

Table S2791.  Gene #250: 'TCF7L2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
TCF7L2 MUTATED 9 4 5 14
TCF7L2 WILD-TYPE 121 74 63 182
'TCF7L2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.629 (Fisher's exact test), Q value = 0.93

Table S2792.  Gene #250: 'TCF7L2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
TCF7L2 MUTATED 4 7 2 2 4 4 3 1 5
TCF7L2 WILD-TYPE 36 55 26 78 65 44 40 27 69
'TCF7L2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.244 (Fisher's exact test), Q value = 0.57

Table S2793.  Gene #250: 'TCF7L2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
TCF7L2 MUTATED 3 1 5 1
TCF7L2 WILD-TYPE 30 30 22 18
'TCF7L2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0368 (Fisher's exact test), Q value = 0.2

Table S2794.  Gene #250: 'TCF7L2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
TCF7L2 MUTATED 2 3 2 3
TCF7L2 WILD-TYPE 52 7 22 19

Figure S931.  Get High-res Image Gene #250: 'TCF7L2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

'C17ORF47 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0646 (Fisher's exact test), Q value = 0.28

Table S2795.  Gene #251: 'C17ORF47 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
C17ORF47 MUTATED 1 0 0 2
C17ORF47 WILD-TYPE 45 58 64 41
'C17ORF47 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2796.  Gene #251: 'C17ORF47 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
C17ORF47 MUTATED 1 1 1
C17ORF47 WILD-TYPE 50 82 76
'C17ORF47 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.373 (Fisher's exact test), Q value = 0.7

Table S2797.  Gene #251: 'C17ORF47 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
C17ORF47 MUTATED 3 1 3 0
C17ORF47 WILD-TYPE 175 182 98 20
'C17ORF47 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.26 (Fisher's exact test), Q value = 0.58

Table S2798.  Gene #251: 'C17ORF47 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
C17ORF47 MUTATED 2 2 0
C17ORF47 WILD-TYPE 85 78 100
'C17ORF47 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2799.  Gene #251: 'C17ORF47 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
C17ORF47 MUTATED 1 3 3
C17ORF47 WILD-TYPE 88 157 135
'C17ORF47 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.886 (Fisher's exact test), Q value = 1

Table S2800.  Gene #251: 'C17ORF47 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
C17ORF47 MUTATED 3 3 1
C17ORF47 WILD-TYPE 179 130 71
'C17ORF47 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2801.  Gene #251: 'C17ORF47 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
C17ORF47 MUTATED 2 1 1 3
C17ORF47 WILD-TYPE 110 95 91 183
'C17ORF47 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.107 (Fisher's exact test), Q value = 0.36

Table S2802.  Gene #251: 'C17ORF47 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
C17ORF47 MUTATED 3 0 0 1 1 0 2
C17ORF47 WILD-TYPE 57 50 49 39 62 125 97
'C17ORF47 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.693 (Fisher's exact test), Q value = 0.97

Table S2803.  Gene #251: 'C17ORF47 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
C17ORF47 MUTATED 2 2 0 3
C17ORF47 WILD-TYPE 128 76 68 193
'C17ORF47 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.457 (Fisher's exact test), Q value = 0.78

Table S2804.  Gene #251: 'C17ORF47 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
C17ORF47 MUTATED 0 2 1 2 1 0 0 1 0
C17ORF47 WILD-TYPE 40 60 27 78 68 48 43 27 74
'TOP2A MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.073 (Fisher's exact test), Q value = 0.29

Table S2805.  Gene #252: 'TOP2A MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
TOP2A MUTATED 2 0 0 2
TOP2A WILD-TYPE 44 58 64 41
'TOP2A MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.833 (Fisher's exact test), Q value = 1

Table S2806.  Gene #252: 'TOP2A MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
TOP2A MUTATED 1 1 2
TOP2A WILD-TYPE 50 82 75
'TOP2A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00062 (Fisher's exact test), Q value = 0.018

Table S2807.  Gene #252: 'TOP2A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
TOP2A MUTATED 16 2 1 1
TOP2A WILD-TYPE 162 181 100 19

Figure S932.  Get High-res Image Gene #252: 'TOP2A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'TOP2A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.194 (Fisher's exact test), Q value = 0.5

Table S2808.  Gene #252: 'TOP2A MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
TOP2A MUTATED 5 2 9
TOP2A WILD-TYPE 82 78 91
'TOP2A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.739 (Fisher's exact test), Q value = 1

Table S2809.  Gene #252: 'TOP2A MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
TOP2A MUTATED 2 6 6
TOP2A WILD-TYPE 87 154 132
'TOP2A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.556 (Fisher's exact test), Q value = 0.87

Table S2810.  Gene #252: 'TOP2A MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
TOP2A MUTATED 7 6 1
TOP2A WILD-TYPE 175 127 71
'TOP2A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0769 (Fisher's exact test), Q value = 0.3

Table S2811.  Gene #252: 'TOP2A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
TOP2A MUTATED 2 8 5 5
TOP2A WILD-TYPE 110 88 87 181
'TOP2A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 6e-05 (Fisher's exact test), Q value = 0.0037

Table S2812.  Gene #252: 'TOP2A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
TOP2A MUTATED 1 3 9 3 0 1 3
TOP2A WILD-TYPE 59 47 40 37 63 124 96

Figure S933.  Get High-res Image Gene #252: 'TOP2A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'TOP2A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0214 (Fisher's exact test), Q value = 0.15

Table S2813.  Gene #252: 'TOP2A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
TOP2A MUTATED 12 2 1 5
TOP2A WILD-TYPE 118 76 67 191

Figure S934.  Get High-res Image Gene #252: 'TOP2A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'TOP2A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.129 (Fisher's exact test), Q value = 0.4

Table S2814.  Gene #252: 'TOP2A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
TOP2A MUTATED 5 3 1 2 5 0 2 1 1
TOP2A WILD-TYPE 35 59 27 78 64 48 41 27 73
'TOP2A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0603 (Fisher's exact test), Q value = 0.27

Table S2815.  Gene #252: 'TOP2A MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
TOP2A MUTATED 0 0 1 2
TOP2A WILD-TYPE 33 31 26 17
'TOP2A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2816.  Gene #252: 'TOP2A MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
TOP2A MUTATED 2 0 1 0
TOP2A WILD-TYPE 52 10 23 22
'MIER3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00043 (Fisher's exact test), Q value = 0.014

Table S2817.  Gene #253: 'MIER3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
MIER3 MUTATED 5 0 0 5
MIER3 WILD-TYPE 41 58 64 38

Figure S935.  Get High-res Image Gene #253: 'MIER3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'MIER3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00511 (Fisher's exact test), Q value = 0.064

Table S2818.  Gene #253: 'MIER3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
MIER3 MUTATED 7 2 1
MIER3 WILD-TYPE 44 81 76

Figure S936.  Get High-res Image Gene #253: 'MIER3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'MIER3 MUTATION STATUS' versus 'CN_CNMF'

P value = 4e-05 (Fisher's exact test), Q value = 0.0027

Table S2819.  Gene #253: 'MIER3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
MIER3 MUTATED 14 0 0 0
MIER3 WILD-TYPE 164 183 101 20

Figure S937.  Get High-res Image Gene #253: 'MIER3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'MIER3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.779 (Fisher's exact test), Q value = 1

Table S2820.  Gene #253: 'MIER3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
MIER3 MUTATED 1 0 2
MIER3 WILD-TYPE 86 80 98
'MIER3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.462 (Fisher's exact test), Q value = 0.79

Table S2821.  Gene #253: 'MIER3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
MIER3 MUTATED 3 6 2
MIER3 WILD-TYPE 86 154 136
'MIER3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.395 (Fisher's exact test), Q value = 0.72

Table S2822.  Gene #253: 'MIER3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
MIER3 MUTATED 3 5 3
MIER3 WILD-TYPE 179 128 69
'MIER3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0987 (Fisher's exact test), Q value = 0.35

Table S2823.  Gene #253: 'MIER3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
MIER3 MUTATED 1 2 1 10
MIER3 WILD-TYPE 111 94 91 176
'MIER3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0124 (Fisher's exact test), Q value = 0.11

Table S2824.  Gene #253: 'MIER3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
MIER3 MUTATED 1 1 3 0 0 1 8
MIER3 WILD-TYPE 59 49 46 40 63 124 91

Figure S938.  Get High-res Image Gene #253: 'MIER3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'MIER3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0282 (Fisher's exact test), Q value = 0.17

Table S2825.  Gene #253: 'MIER3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
MIER3 MUTATED 3 0 0 11
MIER3 WILD-TYPE 127 78 68 185

Figure S939.  Get High-res Image Gene #253: 'MIER3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'MIER3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00491 (Fisher's exact test), Q value = 0.063

Table S2826.  Gene #253: 'MIER3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
MIER3 MUTATED 1 2 1 1 8 0 0 1 0
MIER3 WILD-TYPE 39 60 27 79 61 48 43 27 74

Figure S940.  Get High-res Image Gene #253: 'MIER3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'FBXO21 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.258 (Fisher's exact test), Q value = 0.58

Table S2827.  Gene #254: 'FBXO21 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
FBXO21 MUTATED 2 0 1 2
FBXO21 WILD-TYPE 44 58 63 41
'FBXO21 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.115 (Fisher's exact test), Q value = 0.38

Table S2828.  Gene #254: 'FBXO21 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
FBXO21 MUTATED 2 0 3
FBXO21 WILD-TYPE 49 83 74
'FBXO21 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.127 (Fisher's exact test), Q value = 0.4

Table S2829.  Gene #254: 'FBXO21 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
FBXO21 MUTATED 7 1 1 0
FBXO21 WILD-TYPE 171 182 100 20
'FBXO21 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.389 (Fisher's exact test), Q value = 0.72

Table S2830.  Gene #254: 'FBXO21 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
FBXO21 MUTATED 1 0 3
FBXO21 WILD-TYPE 86 80 97
'FBXO21 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.306 (Fisher's exact test), Q value = 0.64

Table S2831.  Gene #254: 'FBXO21 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
FBXO21 MUTATED 0 3 4
FBXO21 WILD-TYPE 89 157 134
'FBXO21 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.306 (Fisher's exact test), Q value = 0.64

Table S2832.  Gene #254: 'FBXO21 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
FBXO21 MUTATED 3 4 0
FBXO21 WILD-TYPE 179 129 72
'FBXO21 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.224 (Fisher's exact test), Q value = 0.54

Table S2833.  Gene #254: 'FBXO21 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
FBXO21 MUTATED 0 3 1 5
FBXO21 WILD-TYPE 112 93 91 181
'FBXO21 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.005 (Fisher's exact test), Q value = 0.064

Table S2834.  Gene #254: 'FBXO21 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
FBXO21 MUTATED 1 0 4 0 0 0 4
FBXO21 WILD-TYPE 59 50 45 40 63 125 95

Figure S941.  Get High-res Image Gene #254: 'FBXO21 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'FBXO21 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.736 (Fisher's exact test), Q value = 1

Table S2835.  Gene #254: 'FBXO21 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
FBXO21 MUTATED 3 1 0 5
FBXO21 WILD-TYPE 127 77 68 191
'FBXO21 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0562 (Fisher's exact test), Q value = 0.26

Table S2836.  Gene #254: 'FBXO21 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
FBXO21 MUTATED 0 1 1 1 5 0 0 1 0
FBXO21 WILD-TYPE 40 61 27 79 64 48 43 27 74
'CYP1B1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0741 (Fisher's exact test), Q value = 0.29

Table S2837.  Gene #255: 'CYP1B1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
CYP1B1 MUTATED 2 0 0 2
CYP1B1 WILD-TYPE 44 58 64 41
'CYP1B1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.833 (Fisher's exact test), Q value = 1

Table S2838.  Gene #255: 'CYP1B1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
CYP1B1 MUTATED 1 1 2
CYP1B1 WILD-TYPE 50 82 75
'CYP1B1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.412 (Fisher's exact test), Q value = 0.74

Table S2839.  Gene #255: 'CYP1B1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
CYP1B1 MUTATED 7 3 1 0
CYP1B1 WILD-TYPE 171 180 100 20
'CYP1B1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2840.  Gene #255: 'CYP1B1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
CYP1B1 MUTATED 3 2 3
CYP1B1 WILD-TYPE 84 78 97
'CYP1B1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.795 (Fisher's exact test), Q value = 1

Table S2841.  Gene #255: 'CYP1B1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
CYP1B1 MUTATED 2 4 5
CYP1B1 WILD-TYPE 87 156 133
'CYP1B1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.921 (Fisher's exact test), Q value = 1

Table S2842.  Gene #255: 'CYP1B1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
CYP1B1 MUTATED 6 3 2
CYP1B1 WILD-TYPE 176 130 70
'CYP1B1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.484 (Fisher's exact test), Q value = 0.81

Table S2843.  Gene #255: 'CYP1B1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
CYP1B1 MUTATED 2 4 3 3
CYP1B1 WILD-TYPE 110 92 89 183
'CYP1B1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.089 (Fisher's exact test), Q value = 0.32

Table S2844.  Gene #255: 'CYP1B1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
CYP1B1 MUTATED 2 0 3 0 4 1 2
CYP1B1 WILD-TYPE 58 50 46 40 59 124 97
'CYP1B1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.512 (Fisher's exact test), Q value = 0.83

Table S2845.  Gene #255: 'CYP1B1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
CYP1B1 MUTATED 4 3 0 5
CYP1B1 WILD-TYPE 126 75 68 191
'CYP1B1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.681 (Fisher's exact test), Q value = 0.96

Table S2846.  Gene #255: 'CYP1B1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
CYP1B1 MUTATED 1 3 1 2 3 1 1 0 0
CYP1B1 WILD-TYPE 39 59 27 78 66 47 42 28 74
'CYP1B1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.206 (Fisher's exact test), Q value = 0.51

Table S2847.  Gene #255: 'CYP1B1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
CYP1B1 MUTATED 0 2 0 1
CYP1B1 WILD-TYPE 33 29 27 18
'CYP1B1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.194 (Fisher's exact test), Q value = 0.5

Table S2848.  Gene #255: 'CYP1B1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
CYP1B1 MUTATED 1 1 0 1
CYP1B1 WILD-TYPE 53 9 24 21
'MSH6 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0117 (Fisher's exact test), Q value = 0.11

Table S2849.  Gene #256: 'MSH6 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
MSH6 MUTATED 6 1 1 5
MSH6 WILD-TYPE 40 57 63 38

Figure S942.  Get High-res Image Gene #256: 'MSH6 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'MSH6 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00838 (Fisher's exact test), Q value = 0.085

Table S2850.  Gene #256: 'MSH6 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
MSH6 MUTATED 8 3 2
MSH6 WILD-TYPE 43 80 75

Figure S943.  Get High-res Image Gene #256: 'MSH6 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'MSH6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0166 (Fisher's exact test), Q value = 0.13

Table S2851.  Gene #256: 'MSH6 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
MSH6 MUTATED 23 8 12 2
MSH6 WILD-TYPE 155 175 89 18

Figure S944.  Get High-res Image Gene #256: 'MSH6 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'MSH6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.358 (Fisher's exact test), Q value = 0.69

Table S2852.  Gene #256: 'MSH6 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
MSH6 MUTATED 14 7 12
MSH6 WILD-TYPE 73 73 88
'MSH6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0862 (Fisher's exact test), Q value = 0.32

Table S2853.  Gene #256: 'MSH6 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
MSH6 MUTATED 5 9 17
MSH6 WILD-TYPE 84 151 121
'MSH6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0962 (Fisher's exact test), Q value = 0.34

Table S2854.  Gene #256: 'MSH6 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
MSH6 MUTATED 14 7 10
MSH6 WILD-TYPE 168 126 62
'MSH6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.114 (Fisher's exact test), Q value = 0.37

Table S2855.  Gene #256: 'MSH6 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
MSH6 MUTATED 15 12 6 12
MSH6 WILD-TYPE 97 84 86 174
'MSH6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0058 (Fisher's exact test), Q value = 0.069

Table S2856.  Gene #256: 'MSH6 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
MSH6 MUTATED 8 8 6 5 6 2 10
MSH6 WILD-TYPE 52 42 43 35 57 123 89

Figure S945.  Get High-res Image Gene #256: 'MSH6 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'MSH6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00041 (Fisher's exact test), Q value = 0.013

Table S2857.  Gene #256: 'MSH6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
MSH6 MUTATED 25 5 3 11
MSH6 WILD-TYPE 105 73 65 185

Figure S946.  Get High-res Image Gene #256: 'MSH6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'MSH6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0255 (Fisher's exact test), Q value = 0.16

Table S2858.  Gene #256: 'MSH6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
MSH6 MUTATED 8 6 6 7 9 3 2 1 2
MSH6 WILD-TYPE 32 56 22 73 60 45 41 27 72

Figure S947.  Get High-res Image Gene #256: 'MSH6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'MSH6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.48 (Fisher's exact test), Q value = 0.81

Table S2859.  Gene #256: 'MSH6 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
MSH6 MUTATED 2 2 1 3
MSH6 WILD-TYPE 31 29 26 16
'MSH6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.856 (Fisher's exact test), Q value = 1

Table S2860.  Gene #256: 'MSH6 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
MSH6 MUTATED 5 0 1 2
MSH6 WILD-TYPE 49 10 23 20
'MMP8 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.121 (Fisher's exact test), Q value = 0.39

Table S2861.  Gene #257: 'MMP8 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
MMP8 MUTATED 9 2 2 0
MMP8 WILD-TYPE 169 181 99 20
'MMP8 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.536 (Fisher's exact test), Q value = 0.86

Table S2862.  Gene #257: 'MMP8 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
MMP8 MUTATED 4 2 6
MMP8 WILD-TYPE 83 78 94
'MMP8 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.146 (Fisher's exact test), Q value = 0.43

Table S2863.  Gene #257: 'MMP8 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
MMP8 MUTATED 1 8 2
MMP8 WILD-TYPE 88 152 136
'MMP8 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00431 (Fisher's exact test), Q value = 0.06

Table S2864.  Gene #257: 'MMP8 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
MMP8 MUTATED 2 9 0
MMP8 WILD-TYPE 180 124 72

Figure S948.  Get High-res Image Gene #257: 'MMP8 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'MMP8 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.194 (Fisher's exact test), Q value = 0.5

Table S2865.  Gene #257: 'MMP8 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
MMP8 MUTATED 3 5 3 2
MMP8 WILD-TYPE 109 91 89 184
'MMP8 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0522 (Fisher's exact test), Q value = 0.25

Table S2866.  Gene #257: 'MMP8 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
MMP8 MUTATED 2 2 4 1 1 0 3
MMP8 WILD-TYPE 58 48 45 39 62 125 96
'MMP8 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.57 (Fisher's exact test), Q value = 0.88

Table S2867.  Gene #257: 'MMP8 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
MMP8 MUTATED 6 2 1 4
MMP8 WILD-TYPE 124 76 67 192
'MMP8 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.574 (Fisher's exact test), Q value = 0.88

Table S2868.  Gene #257: 'MMP8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
MMP8 MUTATED 0 3 1 1 4 2 1 0 1
MMP8 WILD-TYPE 40 59 27 79 65 46 42 28 73
'MMP8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0827 (Fisher's exact test), Q value = 0.31

Table S2869.  Gene #257: 'MMP8 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
MMP8 MUTATED 0 1 0 2
MMP8 WILD-TYPE 33 30 27 17
'MMP8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2870.  Gene #257: 'MMP8 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
MMP8 MUTATED 2 0 1 0
MMP8 WILD-TYPE 52 10 23 22
'RAG1AP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.791 (Fisher's exact test), Q value = 1

Table S2871.  Gene #258: 'RAG1AP1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
RAG1AP1 MUTATED 3 1 1 0
RAG1AP1 WILD-TYPE 175 182 100 20
'RAG1AP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.865 (Fisher's exact test), Q value = 1

Table S2872.  Gene #258: 'RAG1AP1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
RAG1AP1 MUTATED 1 2 2
RAG1AP1 WILD-TYPE 86 78 98
'RAG1AP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0105 (Fisher's exact test), Q value = 0.098

Table S2873.  Gene #258: 'RAG1AP1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
RAG1AP1 MUTATED 0 0 5
RAG1AP1 WILD-TYPE 89 160 133

Figure S949.  Get High-res Image Gene #258: 'RAG1AP1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'RAG1AP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.101 (Fisher's exact test), Q value = 0.35

Table S2874.  Gene #258: 'RAG1AP1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
RAG1AP1 MUTATED 5 0 0
RAG1AP1 WILD-TYPE 177 133 72
'RAG1AP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.583 (Fisher's exact test), Q value = 0.89

Table S2875.  Gene #258: 'RAG1AP1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
RAG1AP1 MUTATED 2 2 1 1
RAG1AP1 WILD-TYPE 110 94 91 185
'RAG1AP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.045 (Fisher's exact test), Q value = 0.23

Table S2876.  Gene #258: 'RAG1AP1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
RAG1AP1 MUTATED 0 1 3 0 1 0 1
RAG1AP1 WILD-TYPE 60 49 46 40 62 125 98

Figure S950.  Get High-res Image Gene #258: 'RAG1AP1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'RAG1AP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.744 (Fisher's exact test), Q value = 1

Table S2877.  Gene #258: 'RAG1AP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
RAG1AP1 MUTATED 3 1 0 2
RAG1AP1 WILD-TYPE 127 77 68 194
'RAG1AP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.106 (Fisher's exact test), Q value = 0.36

Table S2878.  Gene #258: 'RAG1AP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
RAG1AP1 MUTATED 0 2 1 0 3 0 0 0 0
RAG1AP1 WILD-TYPE 40 60 27 80 66 48 43 28 74
'ALX4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0158 (Fisher's exact test), Q value = 0.12

Table S2879.  Gene #259: 'ALX4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ALX4 MUTATED 10 1 1 0
ALX4 WILD-TYPE 168 182 100 20

Figure S951.  Get High-res Image Gene #259: 'ALX4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ALX4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.149 (Fisher's exact test), Q value = 0.43

Table S2880.  Gene #259: 'ALX4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ALX4 MUTATED 3 1 7
ALX4 WILD-TYPE 84 79 93
'ALX4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.321 (Fisher's exact test), Q value = 0.65

Table S2881.  Gene #259: 'ALX4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ALX4 MUTATED 1 3 6
ALX4 WILD-TYPE 88 157 132
'ALX4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.116 (Fisher's exact test), Q value = 0.38

Table S2882.  Gene #259: 'ALX4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ALX4 MUTATED 8 1 1
ALX4 WILD-TYPE 174 132 71
'ALX4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00404 (Fisher's exact test), Q value = 0.058

Table S2883.  Gene #259: 'ALX4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ALX4 MUTATED 1 7 3 1
ALX4 WILD-TYPE 111 89 89 185

Figure S952.  Get High-res Image Gene #259: 'ALX4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'ALX4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S2884.  Gene #259: 'ALX4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ALX4 MUTATED 0 0 8 2 1 0 1
ALX4 WILD-TYPE 60 50 41 38 62 125 98

Figure S953.  Get High-res Image Gene #259: 'ALX4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ALX4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.476 (Fisher's exact test), Q value = 0.8

Table S2885.  Gene #259: 'ALX4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ALX4 MUTATED 6 1 1 4
ALX4 WILD-TYPE 124 77 67 192
'ALX4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0586 (Fisher's exact test), Q value = 0.26

Table S2886.  Gene #259: 'ALX4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ALX4 MUTATED 3 3 0 1 4 0 0 1 0
ALX4 WILD-TYPE 37 59 28 79 65 48 43 27 74
'ALX4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00823 (Fisher's exact test), Q value = 0.084

Table S2887.  Gene #259: 'ALX4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
ALX4 MUTATED 0 0 1 3
ALX4 WILD-TYPE 33 31 26 16

Figure S954.  Get High-res Image Gene #259: 'ALX4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'ALX4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.128 (Fisher's exact test), Q value = 0.4

Table S2888.  Gene #259: 'ALX4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
ALX4 MUTATED 1 0 3 0
ALX4 WILD-TYPE 53 10 21 22
'OR51E1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.122 (Fisher's exact test), Q value = 0.39

Table S2889.  Gene #260: 'OR51E1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
OR51E1 MUTATED 2 0 0 1
OR51E1 WILD-TYPE 44 58 64 42
'OR51E1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2890.  Gene #260: 'OR51E1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
OR51E1 MUTATED 1 1 1
OR51E1 WILD-TYPE 50 82 76
'OR51E1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.711 (Fisher's exact test), Q value = 0.98

Table S2891.  Gene #260: 'OR51E1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
OR51E1 MUTATED 7 4 4 0
OR51E1 WILD-TYPE 171 179 97 20
'OR51E1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.369 (Fisher's exact test), Q value = 0.7

Table S2892.  Gene #260: 'OR51E1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
OR51E1 MUTATED 3 2 7
OR51E1 WILD-TYPE 84 78 93
'OR51E1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.609 (Fisher's exact test), Q value = 0.91

Table S2893.  Gene #260: 'OR51E1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
OR51E1 MUTATED 2 5 7
OR51E1 WILD-TYPE 87 155 131
'OR51E1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.768 (Fisher's exact test), Q value = 1

Table S2894.  Gene #260: 'OR51E1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
OR51E1 MUTATED 8 4 2
OR51E1 WILD-TYPE 174 129 70
'OR51E1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.196 (Fisher's exact test), Q value = 0.5

Table S2895.  Gene #260: 'OR51E1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
OR51E1 MUTATED 4 6 2 3
OR51E1 WILD-TYPE 108 90 90 183
'OR51E1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0134 (Fisher's exact test), Q value = 0.11

Table S2896.  Gene #260: 'OR51E1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
OR51E1 MUTATED 2 2 6 1 2 1 1
OR51E1 WILD-TYPE 58 48 43 39 61 124 98

Figure S955.  Get High-res Image Gene #260: 'OR51E1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'OR51E1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0287 (Fisher's exact test), Q value = 0.17

Table S2897.  Gene #260: 'OR51E1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
OR51E1 MUTATED 9 0 2 4
OR51E1 WILD-TYPE 121 78 66 192

Figure S956.  Get High-res Image Gene #260: 'OR51E1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'OR51E1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0275 (Fisher's exact test), Q value = 0.17

Table S2898.  Gene #260: 'OR51E1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
OR51E1 MUTATED 2 0 0 4 6 0 2 1 0
OR51E1 WILD-TYPE 38 62 28 76 63 48 41 27 74

Figure S957.  Get High-res Image Gene #260: 'OR51E1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'OR51E1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.39 (Fisher's exact test), Q value = 0.72

Table S2899.  Gene #260: 'OR51E1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
OR51E1 MUTATED 2 0 2 0
OR51E1 WILD-TYPE 31 31 25 19
'OR51E1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.483 (Fisher's exact test), Q value = 0.81

Table S2900.  Gene #260: 'OR51E1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
OR51E1 MUTATED 1 0 2 1
OR51E1 WILD-TYPE 53 10 22 21
'CBL MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0514 (Fisher's exact test), Q value = 0.24

Table S2901.  Gene #261: 'CBL MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
CBL MUTATED 0 0 1 3
CBL WILD-TYPE 46 58 63 40
'CBL MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2902.  Gene #261: 'CBL MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
CBL MUTATED 1 2 1
CBL WILD-TYPE 50 81 76
'CBL MUTATION STATUS' versus 'CN_CNMF'

P value = 0.877 (Fisher's exact test), Q value = 1

Table S2903.  Gene #261: 'CBL MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
CBL MUTATED 13 15 9 2
CBL WILD-TYPE 165 168 92 18
'CBL MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.484 (Fisher's exact test), Q value = 0.81

Table S2904.  Gene #261: 'CBL MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
CBL MUTATED 13 12 10
CBL WILD-TYPE 74 68 90
'CBL MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.425 (Fisher's exact test), Q value = 0.75

Table S2905.  Gene #261: 'CBL MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
CBL MUTATED 5 17 12
CBL WILD-TYPE 84 143 126
'CBL MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.646 (Fisher's exact test), Q value = 0.93

Table S2906.  Gene #261: 'CBL MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
CBL MUTATED 14 12 8
CBL WILD-TYPE 168 121 64
'CBL MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00771 (Fisher's exact test), Q value = 0.082

Table S2907.  Gene #261: 'CBL MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
CBL MUTATED 14 11 8 6
CBL WILD-TYPE 98 85 84 180

Figure S958.  Get High-res Image Gene #261: 'CBL MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'CBL MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00021 (Fisher's exact test), Q value = 0.0086

Table S2908.  Gene #261: 'CBL MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
CBL MUTATED 9 6 7 3 9 2 3
CBL WILD-TYPE 51 44 42 37 54 123 96

Figure S959.  Get High-res Image Gene #261: 'CBL MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CBL MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00184 (Fisher's exact test), Q value = 0.036

Table S2909.  Gene #261: 'CBL MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
CBL MUTATED 18 8 7 6
CBL WILD-TYPE 112 70 61 190

Figure S960.  Get High-res Image Gene #261: 'CBL MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'CBL MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00313 (Fisher's exact test), Q value = 0.05

Table S2910.  Gene #261: 'CBL MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
CBL MUTATED 3 8 7 5 3 2 8 0 3
CBL WILD-TYPE 37 54 21 75 66 46 35 28 71

Figure S961.  Get High-res Image Gene #261: 'CBL MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'CBL MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0101 (Fisher's exact test), Q value = 0.096

Table S2911.  Gene #261: 'CBL MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
CBL MUTATED 3 4 0 6
CBL WILD-TYPE 30 27 27 13

Figure S962.  Get High-res Image Gene #261: 'CBL MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'CBL MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.518 (Fisher's exact test), Q value = 0.84

Table S2912.  Gene #261: 'CBL MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
CBL MUTATED 7 1 1 4
CBL WILD-TYPE 47 9 23 18
'SLC28A2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0224 (Fisher's exact test), Q value = 0.15

Table S2913.  Gene #262: 'SLC28A2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
SLC28A2 MUTATED 11 4 0 0
SLC28A2 WILD-TYPE 167 179 101 20

Figure S963.  Get High-res Image Gene #262: 'SLC28A2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'SLC28A2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.524 (Fisher's exact test), Q value = 0.84

Table S2914.  Gene #262: 'SLC28A2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
SLC28A2 MUTATED 5 2 6
SLC28A2 WILD-TYPE 82 78 94
'SLC28A2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.609 (Fisher's exact test), Q value = 0.91

Table S2915.  Gene #262: 'SLC28A2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
SLC28A2 MUTATED 2 5 7
SLC28A2 WILD-TYPE 87 155 131
'SLC28A2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.636 (Fisher's exact test), Q value = 0.93

Table S2916.  Gene #262: 'SLC28A2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
SLC28A2 MUTATED 8 5 1
SLC28A2 WILD-TYPE 174 128 71
'SLC28A2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0178 (Fisher's exact test), Q value = 0.13

Table S2917.  Gene #262: 'SLC28A2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
SLC28A2 MUTATED 4 4 6 1
SLC28A2 WILD-TYPE 108 92 86 185

Figure S964.  Get High-res Image Gene #262: 'SLC28A2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'SLC28A2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0665 (Fisher's exact test), Q value = 0.28

Table S2918.  Gene #262: 'SLC28A2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
SLC28A2 MUTATED 2 3 4 1 3 1 1
SLC28A2 WILD-TYPE 58 47 45 39 60 124 98
'SLC28A2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.168 (Fisher's exact test), Q value = 0.46

Table S2919.  Gene #262: 'SLC28A2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
SLC28A2 MUTATED 5 5 2 3
SLC28A2 WILD-TYPE 125 73 66 193
'SLC28A2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.207 (Fisher's exact test), Q value = 0.51

Table S2920.  Gene #262: 'SLC28A2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
SLC28A2 MUTATED 2 5 2 1 2 0 1 1 1
SLC28A2 WILD-TYPE 38 57 26 79 67 48 42 27 73
'SLC28A2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.872 (Fisher's exact test), Q value = 1

Table S2921.  Gene #262: 'SLC28A2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
SLC28A2 MUTATED 1 1 0 1
SLC28A2 WILD-TYPE 32 30 27 18
'SLC28A2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.378 (Fisher's exact test), Q value = 0.71

Table S2922.  Gene #262: 'SLC28A2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
SLC28A2 MUTATED 2 1 0 0
SLC28A2 WILD-TYPE 52 9 24 22
'ZNF222 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.402 (Fisher's exact test), Q value = 0.73

Table S2923.  Gene #263: 'ZNF222 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ZNF222 MUTATED 1 0 1 2
ZNF222 WILD-TYPE 45 58 63 41
'ZNF222 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.68 (Fisher's exact test), Q value = 0.96

Table S2924.  Gene #263: 'ZNF222 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ZNF222 MUTATED 0 2 2
ZNF222 WILD-TYPE 51 81 75
'ZNF222 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.412 (Fisher's exact test), Q value = 0.74

Table S2925.  Gene #263: 'ZNF222 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ZNF222 MUTATED 7 3 1 0
ZNF222 WILD-TYPE 171 180 100 20
'ZNF222 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.634 (Fisher's exact test), Q value = 0.93

Table S2926.  Gene #263: 'ZNF222 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ZNF222 MUTATED 2 1 4
ZNF222 WILD-TYPE 85 79 96
'ZNF222 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.26 (Fisher's exact test), Q value = 0.58

Table S2927.  Gene #263: 'ZNF222 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ZNF222 MUTATED 0 5 4
ZNF222 WILD-TYPE 89 155 134
'ZNF222 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.111 (Fisher's exact test), Q value = 0.37

Table S2928.  Gene #263: 'ZNF222 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ZNF222 MUTATED 3 6 0
ZNF222 WILD-TYPE 179 127 72
'ZNF222 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.508 (Fisher's exact test), Q value = 0.83

Table S2929.  Gene #263: 'ZNF222 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ZNF222 MUTATED 1 4 2 4
ZNF222 WILD-TYPE 111 92 90 182
'ZNF222 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.555 (Fisher's exact test), Q value = 0.87

Table S2930.  Gene #263: 'ZNF222 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ZNF222 MUTATED 1 1 3 1 2 2 1
ZNF222 WILD-TYPE 59 49 46 39 61 123 98
'ZNF222 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.968 (Fisher's exact test), Q value = 1

Table S2931.  Gene #263: 'ZNF222 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ZNF222 MUTATED 3 1 1 5
ZNF222 WILD-TYPE 127 77 67 191
'ZNF222 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.199 (Fisher's exact test), Q value = 0.5

Table S2932.  Gene #263: 'ZNF222 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ZNF222 MUTATED 2 1 1 2 4 0 0 0 0
ZNF222 WILD-TYPE 38 61 27 78 65 48 43 28 74
'UBQLN2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0156 (Fisher's exact test), Q value = 0.12

Table S2933.  Gene #264: 'UBQLN2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
UBQLN2 MUTATED 10 1 1 0
UBQLN2 WILD-TYPE 168 182 100 20

Figure S965.  Get High-res Image Gene #264: 'UBQLN2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'UBQLN2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.369 (Fisher's exact test), Q value = 0.7

Table S2934.  Gene #264: 'UBQLN2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
UBQLN2 MUTATED 4 1 5
UBQLN2 WILD-TYPE 83 79 95
'UBQLN2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0427 (Fisher's exact test), Q value = 0.22

Table S2935.  Gene #264: 'UBQLN2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
UBQLN2 MUTATED 0 4 8
UBQLN2 WILD-TYPE 89 156 130

Figure S966.  Get High-res Image Gene #264: 'UBQLN2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'UBQLN2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.193 (Fisher's exact test), Q value = 0.5

Table S2936.  Gene #264: 'UBQLN2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
UBQLN2 MUTATED 8 4 0
UBQLN2 WILD-TYPE 174 129 72
'UBQLN2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0555 (Fisher's exact test), Q value = 0.26

Table S2937.  Gene #264: 'UBQLN2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
UBQLN2 MUTATED 1 5 4 2
UBQLN2 WILD-TYPE 111 91 88 184
'UBQLN2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00039 (Fisher's exact test), Q value = 0.013

Table S2938.  Gene #264: 'UBQLN2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
UBQLN2 MUTATED 0 0 6 1 3 0 2
UBQLN2 WILD-TYPE 60 50 43 39 60 125 97

Figure S967.  Get High-res Image Gene #264: 'UBQLN2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'UBQLN2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.745 (Fisher's exact test), Q value = 1

Table S2939.  Gene #264: 'UBQLN2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
UBQLN2 MUTATED 2 3 1 5
UBQLN2 WILD-TYPE 128 75 67 191
'UBQLN2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.224 (Fisher's exact test), Q value = 0.54

Table S2940.  Gene #264: 'UBQLN2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
UBQLN2 MUTATED 1 4 0 1 3 0 1 1 0
UBQLN2 WILD-TYPE 39 58 28 79 66 48 42 27 74
'UBQLN2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2941.  Gene #264: 'UBQLN2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
UBQLN2 MUTATED 1 1 1 1
UBQLN2 WILD-TYPE 32 30 26 18
'UBQLN2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.603 (Fisher's exact test), Q value = 0.91

Table S2942.  Gene #264: 'UBQLN2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
UBQLN2 MUTATED 2 1 1 0
UBQLN2 WILD-TYPE 52 9 23 22
'PPARGC1A MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00593 (Fisher's exact test), Q value = 0.07

Table S2943.  Gene #265: 'PPARGC1A MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
PPARGC1A MUTATED 4 0 0 1
PPARGC1A WILD-TYPE 42 58 64 42

Figure S968.  Get High-res Image Gene #265: 'PPARGC1A MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'PPARGC1A MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00063 (Fisher's exact test), Q value = 0.018

Table S2944.  Gene #265: 'PPARGC1A MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
PPARGC1A MUTATED 5 0 0
PPARGC1A WILD-TYPE 46 83 77

Figure S969.  Get High-res Image Gene #265: 'PPARGC1A MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'PPARGC1A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00354 (Fisher's exact test), Q value = 0.054

Table S2945.  Gene #265: 'PPARGC1A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
PPARGC1A MUTATED 17 3 3 0
PPARGC1A WILD-TYPE 161 180 98 20

Figure S970.  Get High-res Image Gene #265: 'PPARGC1A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'PPARGC1A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.278 (Fisher's exact test), Q value = 0.61

Table S2946.  Gene #265: 'PPARGC1A MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
PPARGC1A MUTATED 3 6 9
PPARGC1A WILD-TYPE 84 74 91
'PPARGC1A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.782 (Fisher's exact test), Q value = 1

Table S2947.  Gene #265: 'PPARGC1A MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
PPARGC1A MUTATED 6 8 8
PPARGC1A WILD-TYPE 83 152 130
'PPARGC1A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.117 (Fisher's exact test), Q value = 0.38

Table S2948.  Gene #265: 'PPARGC1A MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
PPARGC1A MUTATED 6 10 6
PPARGC1A WILD-TYPE 176 123 66
'PPARGC1A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.263 (Fisher's exact test), Q value = 0.59

Table S2949.  Gene #265: 'PPARGC1A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
PPARGC1A MUTATED 4 8 5 6
PPARGC1A WILD-TYPE 108 88 87 180
'PPARGC1A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0051 (Fisher's exact test), Q value = 0.064

Table S2950.  Gene #265: 'PPARGC1A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
PPARGC1A MUTATED 2 6 4 2 3 0 6
PPARGC1A WILD-TYPE 58 44 45 38 60 125 93

Figure S971.  Get High-res Image Gene #265: 'PPARGC1A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'PPARGC1A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.07 (Fisher's exact test), Q value = 0.29

Table S2951.  Gene #265: 'PPARGC1A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
PPARGC1A MUTATED 12 3 1 7
PPARGC1A WILD-TYPE 118 75 67 189
'PPARGC1A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00525 (Fisher's exact test), Q value = 0.065

Table S2952.  Gene #265: 'PPARGC1A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
PPARGC1A MUTATED 6 3 1 4 7 0 2 0 0
PPARGC1A WILD-TYPE 34 59 27 76 62 48 41 28 74

Figure S972.  Get High-res Image Gene #265: 'PPARGC1A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'PPARGC1A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0239 (Fisher's exact test), Q value = 0.16

Table S2953.  Gene #265: 'PPARGC1A MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
PPARGC1A MUTATED 1 0 0 3
PPARGC1A WILD-TYPE 32 31 27 16

Figure S973.  Get High-res Image Gene #265: 'PPARGC1A MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'PPARGC1A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.67 (Fisher's exact test), Q value = 0.95

Table S2954.  Gene #265: 'PPARGC1A MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
PPARGC1A MUTATED 2 0 2 0
PPARGC1A WILD-TYPE 52 10 22 22
'ATP6V1B1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0141 (Fisher's exact test), Q value = 0.12

Table S2955.  Gene #266: 'ATP6V1B1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ATP6V1B1 MUTATED 5 0 1 1
ATP6V1B1 WILD-TYPE 41 58 63 42

Figure S974.  Get High-res Image Gene #266: 'ATP6V1B1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'ATP6V1B1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.106 (Fisher's exact test), Q value = 0.36

Table S2956.  Gene #266: 'ATP6V1B1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ATP6V1B1 MUTATED 4 1 2
ATP6V1B1 WILD-TYPE 47 82 75
'ATP6V1B1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00073 (Fisher's exact test), Q value = 0.02

Table S2957.  Gene #266: 'ATP6V1B1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ATP6V1B1 MUTATED 14 1 1 0
ATP6V1B1 WILD-TYPE 164 182 100 20

Figure S975.  Get High-res Image Gene #266: 'ATP6V1B1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ATP6V1B1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0359 (Fisher's exact test), Q value = 0.2

Table S2958.  Gene #266: 'ATP6V1B1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ATP6V1B1 MUTATED 3 0 7
ATP6V1B1 WILD-TYPE 84 80 93

Figure S976.  Get High-res Image Gene #266: 'ATP6V1B1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'ATP6V1B1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.875 (Fisher's exact test), Q value = 1

Table S2959.  Gene #266: 'ATP6V1B1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ATP6V1B1 MUTATED 2 6 5
ATP6V1B1 WILD-TYPE 87 154 133
'ATP6V1B1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0481 (Fisher's exact test), Q value = 0.23

Table S2960.  Gene #266: 'ATP6V1B1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ATP6V1B1 MUTATED 7 1 5
ATP6V1B1 WILD-TYPE 175 132 67

Figure S977.  Get High-res Image Gene #266: 'ATP6V1B1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'ATP6V1B1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.738 (Fisher's exact test), Q value = 1

Table S2961.  Gene #266: 'ATP6V1B1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ATP6V1B1 MUTATED 2 3 4 7
ATP6V1B1 WILD-TYPE 110 93 88 179
'ATP6V1B1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0162 (Fisher's exact test), Q value = 0.13

Table S2962.  Gene #266: 'ATP6V1B1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ATP6V1B1 MUTATED 1 0 5 2 1 1 6
ATP6V1B1 WILD-TYPE 59 50 44 38 62 124 93

Figure S978.  Get High-res Image Gene #266: 'ATP6V1B1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ATP6V1B1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.354 (Fisher's exact test), Q value = 0.68

Table S2963.  Gene #266: 'ATP6V1B1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ATP6V1B1 MUTATED 6 3 0 7
ATP6V1B1 WILD-TYPE 124 75 68 189
'ATP6V1B1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.157 (Fisher's exact test), Q value = 0.45

Table S2964.  Gene #266: 'ATP6V1B1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ATP6V1B1 MUTATED 1 5 0 4 4 1 0 1 0
ATP6V1B1 WILD-TYPE 39 57 28 76 65 47 43 27 74
'ATP6V1B1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0165 (Fisher's exact test), Q value = 0.13

Table S2965.  Gene #266: 'ATP6V1B1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
ATP6V1B1 MUTATED 1 1 0 4
ATP6V1B1 WILD-TYPE 32 30 27 15

Figure S979.  Get High-res Image Gene #266: 'ATP6V1B1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'ATP6V1B1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.564 (Fisher's exact test), Q value = 0.87

Table S2966.  Gene #266: 'ATP6V1B1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
ATP6V1B1 MUTATED 4 1 1 0
ATP6V1B1 WILD-TYPE 50 9 23 22
'ZNF583 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0297 (Fisher's exact test), Q value = 0.18

Table S2967.  Gene #267: 'ZNF583 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ZNF583 MUTATED 1 1 0 4
ZNF583 WILD-TYPE 45 57 64 39

Figure S980.  Get High-res Image Gene #267: 'ZNF583 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'ZNF583 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.878 (Fisher's exact test), Q value = 1

Table S2968.  Gene #267: 'ZNF583 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ZNF583 MUTATED 1 2 3
ZNF583 WILD-TYPE 50 81 74
'ZNF583 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.012 (Fisher's exact test), Q value = 0.11

Table S2969.  Gene #267: 'ZNF583 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ZNF583 MUTATED 13 2 2 0
ZNF583 WILD-TYPE 165 181 99 20

Figure S981.  Get High-res Image Gene #267: 'ZNF583 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ZNF583 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.753 (Fisher's exact test), Q value = 1

Table S2970.  Gene #267: 'ZNF583 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ZNF583 MUTATED 3 3 6
ZNF583 WILD-TYPE 84 77 94
'ZNF583 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.321 (Fisher's exact test), Q value = 0.65

Table S2971.  Gene #267: 'ZNF583 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ZNF583 MUTATED 1 3 6
ZNF583 WILD-TYPE 88 157 132
'ZNF583 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.274 (Fisher's exact test), Q value = 0.6

Table S2972.  Gene #267: 'ZNF583 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ZNF583 MUTATED 7 3 0
ZNF583 WILD-TYPE 175 130 72
'ZNF583 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.728 (Fisher's exact test), Q value = 1

Table S2973.  Gene #267: 'ZNF583 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ZNF583 MUTATED 3 4 5 6
ZNF583 WILD-TYPE 109 92 87 180
'ZNF583 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0636 (Fisher's exact test), Q value = 0.27

Table S2974.  Gene #267: 'ZNF583 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ZNF583 MUTATED 2 1 6 0 3 2 4
ZNF583 WILD-TYPE 58 49 43 40 60 123 95
'ZNF583 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.112 (Fisher's exact test), Q value = 0.37

Table S2975.  Gene #267: 'ZNF583 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ZNF583 MUTATED 5 6 0 7
ZNF583 WILD-TYPE 125 72 68 189
'ZNF583 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.149 (Fisher's exact test), Q value = 0.43

Table S2976.  Gene #267: 'ZNF583 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ZNF583 MUTATED 0 5 2 3 5 0 0 1 2
ZNF583 WILD-TYPE 40 57 26 77 64 48 43 27 72
'ZNF583 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.137 (Fisher's exact test), Q value = 0.41

Table S2977.  Gene #267: 'ZNF583 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
ZNF583 MUTATED 1 0 0 2
ZNF583 WILD-TYPE 32 31 27 17
'ZNF583 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.563 (Fisher's exact test), Q value = 0.87

Table S2978.  Gene #267: 'ZNF583 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
ZNF583 MUTATED 3 0 0 0
ZNF583 WILD-TYPE 51 10 24 22
'OSBPL2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.337 (Fisher's exact test), Q value = 0.66

Table S2979.  Gene #268: 'OSBPL2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
OSBPL2 MUTATED 7 2 3 0
OSBPL2 WILD-TYPE 171 181 98 20
'OSBPL2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.742 (Fisher's exact test), Q value = 1

Table S2980.  Gene #268: 'OSBPL2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
OSBPL2 MUTATED 4 2 5
OSBPL2 WILD-TYPE 83 78 95
'OSBPL2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.213 (Fisher's exact test), Q value = 0.52

Table S2981.  Gene #268: 'OSBPL2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
OSBPL2 MUTATED 0 4 5
OSBPL2 WILD-TYPE 89 156 133
'OSBPL2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.407 (Fisher's exact test), Q value = 0.73

Table S2982.  Gene #268: 'OSBPL2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
OSBPL2 MUTATED 5 4 0
OSBPL2 WILD-TYPE 177 129 72
'OSBPL2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0335 (Fisher's exact test), Q value = 0.19

Table S2983.  Gene #268: 'OSBPL2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
OSBPL2 MUTATED 2 5 4 1
OSBPL2 WILD-TYPE 110 91 88 185

Figure S982.  Get High-res Image Gene #268: 'OSBPL2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'OSBPL2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 6e-04 (Fisher's exact test), Q value = 0.018

Table S2984.  Gene #268: 'OSBPL2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
OSBPL2 MUTATED 3 2 5 0 2 0 0
OSBPL2 WILD-TYPE 57 48 44 40 61 125 99

Figure S983.  Get High-res Image Gene #268: 'OSBPL2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'OSBPL2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0174 (Fisher's exact test), Q value = 0.13

Table S2985.  Gene #268: 'OSBPL2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
OSBPL2 MUTATED 8 2 0 2
OSBPL2 WILD-TYPE 122 76 68 194

Figure S984.  Get High-res Image Gene #268: 'OSBPL2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'OSBPL2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.506 (Fisher's exact test), Q value = 0.83

Table S2986.  Gene #268: 'OSBPL2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
OSBPL2 MUTATED 1 3 2 1 3 1 0 0 1
OSBPL2 WILD-TYPE 39 59 26 79 66 47 43 28 73
'CRY1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0216 (Fisher's exact test), Q value = 0.15

Table S2987.  Gene #269: 'CRY1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
CRY1 MUTATED 12 2 2 0
CRY1 WILD-TYPE 166 181 99 20

Figure S985.  Get High-res Image Gene #269: 'CRY1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'CRY1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.615 (Fisher's exact test), Q value = 0.91

Table S2988.  Gene #269: 'CRY1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
CRY1 MUTATED 4 3 7
CRY1 WILD-TYPE 83 77 93
'CRY1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.192 (Fisher's exact test), Q value = 0.49

Table S2989.  Gene #269: 'CRY1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
CRY1 MUTATED 3 3 8
CRY1 WILD-TYPE 86 157 130
'CRY1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.879 (Fisher's exact test), Q value = 1

Table S2990.  Gene #269: 'CRY1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
CRY1 MUTATED 7 4 3
CRY1 WILD-TYPE 175 129 69
'CRY1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.117 (Fisher's exact test), Q value = 0.38

Table S2991.  Gene #269: 'CRY1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
CRY1 MUTATED 5 4 5 2
CRY1 WILD-TYPE 107 92 87 184
'CRY1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0171 (Fisher's exact test), Q value = 0.13

Table S2992.  Gene #269: 'CRY1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
CRY1 MUTATED 3 1 4 2 4 0 2
CRY1 WILD-TYPE 57 49 45 38 59 125 97

Figure S986.  Get High-res Image Gene #269: 'CRY1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CRY1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.124 (Fisher's exact test), Q value = 0.39

Table S2993.  Gene #269: 'CRY1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
CRY1 MUTATED 3 4 5 4
CRY1 WILD-TYPE 127 74 63 192
'CRY1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0135 (Fisher's exact test), Q value = 0.11

Table S2994.  Gene #269: 'CRY1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
CRY1 MUTATED 1 3 0 1 5 0 5 1 0
CRY1 WILD-TYPE 39 59 28 79 64 48 38 27 74

Figure S987.  Get High-res Image Gene #269: 'CRY1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'CRY1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.868 (Fisher's exact test), Q value = 1

Table S2995.  Gene #269: 'CRY1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
CRY1 MUTATED 1 1 2 1
CRY1 WILD-TYPE 32 30 25 18
'CRY1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.147 (Fisher's exact test), Q value = 0.43

Table S2996.  Gene #269: 'CRY1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
CRY1 MUTATED 2 0 0 3
CRY1 WILD-TYPE 52 10 24 19
'ZFYVE26 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00254 (Fisher's exact test), Q value = 0.044

Table S2997.  Gene #270: 'ZFYVE26 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ZFYVE26 MUTATED 4 0 0 4
ZFYVE26 WILD-TYPE 42 58 64 39

Figure S988.  Get High-res Image Gene #270: 'ZFYVE26 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'ZFYVE26 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0037 (Fisher's exact test), Q value = 0.055

Table S2998.  Gene #270: 'ZFYVE26 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ZFYVE26 MUTATED 6 1 1
ZFYVE26 WILD-TYPE 45 82 76

Figure S989.  Get High-res Image Gene #270: 'ZFYVE26 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'ZFYVE26 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00038 (Fisher's exact test), Q value = 0.013

Table S2999.  Gene #270: 'ZFYVE26 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ZFYVE26 MUTATED 23 4 4 1
ZFYVE26 WILD-TYPE 155 179 97 19

Figure S990.  Get High-res Image Gene #270: 'ZFYVE26 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ZFYVE26 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0189 (Fisher's exact test), Q value = 0.14

Table S3000.  Gene #270: 'ZFYVE26 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ZFYVE26 MUTATED 9 2 14
ZFYVE26 WILD-TYPE 78 78 86

Figure S991.  Get High-res Image Gene #270: 'ZFYVE26 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'ZFYVE26 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.376 (Fisher's exact test), Q value = 0.71

Table S3001.  Gene #270: 'ZFYVE26 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ZFYVE26 MUTATED 4 10 13
ZFYVE26 WILD-TYPE 85 150 125
'ZFYVE26 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.453 (Fisher's exact test), Q value = 0.78

Table S3002.  Gene #270: 'ZFYVE26 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ZFYVE26 MUTATED 16 7 4
ZFYVE26 WILD-TYPE 166 126 68
'ZFYVE26 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0194 (Fisher's exact test), Q value = 0.14

Table S3003.  Gene #270: 'ZFYVE26 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ZFYVE26 MUTATED 4 13 7 8
ZFYVE26 WILD-TYPE 108 83 85 178

Figure S992.  Get High-res Image Gene #270: 'ZFYVE26 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'ZFYVE26 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S3004.  Gene #270: 'ZFYVE26 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ZFYVE26 MUTATED 5 2 12 5 1 1 6
ZFYVE26 WILD-TYPE 55 48 37 35 62 124 93

Figure S993.  Get High-res Image Gene #270: 'ZFYVE26 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ZFYVE26 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.165 (Fisher's exact test), Q value = 0.46

Table S3005.  Gene #270: 'ZFYVE26 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ZFYVE26 MUTATED 14 4 2 11
ZFYVE26 WILD-TYPE 116 74 66 185
'ZFYVE26 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00883 (Fisher's exact test), Q value = 0.088

Table S3006.  Gene #270: 'ZFYVE26 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ZFYVE26 MUTATED 3 3 1 5 13 2 3 0 1
ZFYVE26 WILD-TYPE 37 59 27 75 56 46 40 28 73

Figure S994.  Get High-res Image Gene #270: 'ZFYVE26 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'ZFYVE26 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0203 (Fisher's exact test), Q value = 0.14

Table S3007.  Gene #270: 'ZFYVE26 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
ZFYVE26 MUTATED 1 3 2 6
ZFYVE26 WILD-TYPE 32 28 25 13

Figure S995.  Get High-res Image Gene #270: 'ZFYVE26 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'ZFYVE26 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.114 (Fisher's exact test), Q value = 0.37

Table S3008.  Gene #270: 'ZFYVE26 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
ZFYVE26 MUTATED 5 0 6 1
ZFYVE26 WILD-TYPE 49 10 18 21
'PALB2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.114 (Fisher's exact test), Q value = 0.37

Table S3009.  Gene #271: 'PALB2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
PALB2 MUTATED 2 0 1 3
PALB2 WILD-TYPE 44 58 63 40
'PALB2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0159 (Fisher's exact test), Q value = 0.13

Table S3010.  Gene #271: 'PALB2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
PALB2 MUTATED 4 0 2
PALB2 WILD-TYPE 47 83 75

Figure S996.  Get High-res Image Gene #271: 'PALB2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'PALB2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.026 (Fisher's exact test), Q value = 0.16

Table S3011.  Gene #271: 'PALB2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
PALB2 MUTATED 14 3 3 0
PALB2 WILD-TYPE 164 180 98 20

Figure S997.  Get High-res Image Gene #271: 'PALB2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'PALB2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.617 (Fisher's exact test), Q value = 0.92

Table S3012.  Gene #271: 'PALB2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
PALB2 MUTATED 4 3 7
PALB2 WILD-TYPE 83 77 93
'PALB2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.665 (Fisher's exact test), Q value = 0.95

Table S3013.  Gene #271: 'PALB2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
PALB2 MUTATED 3 6 8
PALB2 WILD-TYPE 86 154 130
'PALB2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.579 (Fisher's exact test), Q value = 0.88

Table S3014.  Gene #271: 'PALB2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
PALB2 MUTATED 6 7 4
PALB2 WILD-TYPE 176 126 68
'PALB2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.107 (Fisher's exact test), Q value = 0.36

Table S3015.  Gene #271: 'PALB2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
PALB2 MUTATED 4 8 1 7
PALB2 WILD-TYPE 108 88 91 179
'PALB2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0153 (Fisher's exact test), Q value = 0.12

Table S3016.  Gene #271: 'PALB2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
PALB2 MUTATED 4 5 4 0 0 2 5
PALB2 WILD-TYPE 56 45 45 40 63 123 94

Figure S998.  Get High-res Image Gene #271: 'PALB2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'PALB2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.106 (Fisher's exact test), Q value = 0.36

Table S3017.  Gene #271: 'PALB2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
PALB2 MUTATED 9 2 0 9
PALB2 WILD-TYPE 121 76 68 187
'PALB2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0508 (Fisher's exact test), Q value = 0.24

Table S3018.  Gene #271: 'PALB2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
PALB2 MUTATED 2 2 1 2 8 4 0 0 1
PALB2 WILD-TYPE 38 60 27 78 61 44 43 28 73
'PKD2L1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.699 (Fisher's exact test), Q value = 0.97

Table S3019.  Gene #272: 'PKD2L1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
PKD2L1 MUTATED 2 1 1 2
PKD2L1 WILD-TYPE 44 57 63 41
'PKD2L1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.658 (Fisher's exact test), Q value = 0.94

Table S3020.  Gene #272: 'PKD2L1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
PKD2L1 MUTATED 2 3 1
PKD2L1 WILD-TYPE 49 80 76
'PKD2L1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0014 (Fisher's exact test), Q value = 0.031

Table S3021.  Gene #272: 'PKD2L1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
PKD2L1 MUTATED 18 3 2 1
PKD2L1 WILD-TYPE 160 180 99 19

Figure S999.  Get High-res Image Gene #272: 'PKD2L1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'PKD2L1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0119 (Fisher's exact test), Q value = 0.11

Table S3022.  Gene #272: 'PKD2L1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
PKD2L1 MUTATED 4 1 12
PKD2L1 WILD-TYPE 83 79 88

Figure S1000.  Get High-res Image Gene #272: 'PKD2L1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'PKD2L1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.69 (Fisher's exact test), Q value = 0.97

Table S3023.  Gene #272: 'PKD2L1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
PKD2L1 MUTATED 5 11 6
PKD2L1 WILD-TYPE 84 149 132
'PKD2L1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.774 (Fisher's exact test), Q value = 1

Table S3024.  Gene #272: 'PKD2L1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
PKD2L1 MUTATED 9 9 4
PKD2L1 WILD-TYPE 173 124 68
'PKD2L1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0283 (Fisher's exact test), Q value = 0.17

Table S3025.  Gene #272: 'PKD2L1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
PKD2L1 MUTATED 3 11 3 7
PKD2L1 WILD-TYPE 109 85 89 179

Figure S1001.  Get High-res Image Gene #272: 'PKD2L1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'PKD2L1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00045 (Fisher's exact test), Q value = 0.014

Table S3026.  Gene #272: 'PKD2L1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
PKD2L1 MUTATED 2 4 9 1 1 1 6
PKD2L1 WILD-TYPE 58 46 40 39 62 124 93

Figure S1002.  Get High-res Image Gene #272: 'PKD2L1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'PKD2L1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0127 (Fisher's exact test), Q value = 0.11

Table S3027.  Gene #272: 'PKD2L1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
PKD2L1 MUTATED 13 3 0 8
PKD2L1 WILD-TYPE 117 75 68 188

Figure S1003.  Get High-res Image Gene #272: 'PKD2L1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'PKD2L1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 7e-05 (Fisher's exact test), Q value = 0.0041

Table S3028.  Gene #272: 'PKD2L1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
PKD2L1 MUTATED 4 2 4 1 11 1 0 0 1
PKD2L1 WILD-TYPE 36 60 24 79 58 47 43 28 73

Figure S1004.  Get High-res Image Gene #272: 'PKD2L1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'PKD2L1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0256 (Fisher's exact test), Q value = 0.16

Table S3029.  Gene #272: 'PKD2L1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
PKD2L1 MUTATED 3 0 0 3
PKD2L1 WILD-TYPE 30 31 27 16

Figure S1005.  Get High-res Image Gene #272: 'PKD2L1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'PKD2L1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.683 (Fisher's exact test), Q value = 0.96

Table S3030.  Gene #272: 'PKD2L1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
PKD2L1 MUTATED 4 0 2 0
PKD2L1 WILD-TYPE 50 10 22 22
'COLEC10 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0655 (Fisher's exact test), Q value = 0.28

Table S3031.  Gene #273: 'COLEC10 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
COLEC10 MUTATED 1 0 0 2
COLEC10 WILD-TYPE 45 58 64 41
'COLEC10 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.183 (Fisher's exact test), Q value = 0.48

Table S3032.  Gene #273: 'COLEC10 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
COLEC10 MUTATED 2 0 1
COLEC10 WILD-TYPE 49 83 76
'COLEC10 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.469 (Fisher's exact test), Q value = 0.8

Table S3033.  Gene #273: 'COLEC10 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
COLEC10 MUTATED 3 3 3 1
COLEC10 WILD-TYPE 175 180 98 19
'COLEC10 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0819 (Fisher's exact test), Q value = 0.31

Table S3034.  Gene #273: 'COLEC10 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
COLEC10 MUTATED 1 5 1
COLEC10 WILD-TYPE 86 75 99
'COLEC10 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.818 (Fisher's exact test), Q value = 1

Table S3035.  Gene #273: 'COLEC10 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
COLEC10 MUTATED 2 4 2
COLEC10 WILD-TYPE 87 156 136
'COLEC10 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.723 (Fisher's exact test), Q value = 0.99

Table S3036.  Gene #273: 'COLEC10 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
COLEC10 MUTATED 3 3 2
COLEC10 WILD-TYPE 179 130 70
'COLEC10 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.323 (Fisher's exact test), Q value = 0.65

Table S3037.  Gene #273: 'COLEC10 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
COLEC10 MUTATED 4 0 2 4
COLEC10 WILD-TYPE 108 96 90 182
'COLEC10 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0386 (Fisher's exact test), Q value = 0.21

Table S3038.  Gene #273: 'COLEC10 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
COLEC10 MUTATED 5 0 0 0 2 1 2
COLEC10 WILD-TYPE 55 50 49 40 61 124 97

Figure S1006.  Get High-res Image Gene #273: 'COLEC10 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'COLEC10 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0906 (Fisher's exact test), Q value = 0.33

Table S3039.  Gene #273: 'COLEC10 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
COLEC10 MUTATED 6 0 0 4
COLEC10 WILD-TYPE 124 78 68 192
'COLEC10 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.141 (Fisher's exact test), Q value = 0.42

Table S3040.  Gene #273: 'COLEC10 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
COLEC10 MUTATED 0 0 1 5 3 0 0 0 1
COLEC10 WILD-TYPE 40 62 27 75 66 48 43 28 73
'C2ORF77 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0736 (Fisher's exact test), Q value = 0.29

Table S3041.  Gene #274: 'C2ORF77 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
C2ORF77 MUTATED 2 0 0 2
C2ORF77 WILD-TYPE 44 58 64 41
'C2ORF77 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S3042.  Gene #274: 'C2ORF77 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
C2ORF77 MUTATED 1 2 1
C2ORF77 WILD-TYPE 50 81 76
'C2ORF77 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0227 (Fisher's exact test), Q value = 0.15

Table S3043.  Gene #274: 'C2ORF77 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
C2ORF77 MUTATED 8 1 0 0
C2ORF77 WILD-TYPE 170 182 101 20

Figure S1007.  Get High-res Image Gene #274: 'C2ORF77 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'C2ORF77 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.385 (Fisher's exact test), Q value = 0.71

Table S3044.  Gene #274: 'C2ORF77 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
C2ORF77 MUTATED 2 0 3
C2ORF77 WILD-TYPE 85 80 97
'C2ORF77 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.192 (Fisher's exact test), Q value = 0.49

Table S3045.  Gene #274: 'C2ORF77 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
C2ORF77 MUTATED 1 2 6
C2ORF77 WILD-TYPE 88 158 132
'C2ORF77 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.603 (Fisher's exact test), Q value = 0.91

Table S3046.  Gene #274: 'C2ORF77 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
C2ORF77 MUTATED 6 2 1
C2ORF77 WILD-TYPE 176 131 71
'C2ORF77 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.29 (Fisher's exact test), Q value = 0.62

Table S3047.  Gene #274: 'C2ORF77 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
C2ORF77 MUTATED 0 2 3 4
C2ORF77 WILD-TYPE 112 94 89 182
'C2ORF77 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.342 (Fisher's exact test), Q value = 0.67

Table S3048.  Gene #274: 'C2ORF77 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
C2ORF77 MUTATED 1 0 3 1 1 1 2
C2ORF77 WILD-TYPE 59 50 46 39 62 124 97
'C2ORF77 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.756 (Fisher's exact test), Q value = 1

Table S3049.  Gene #274: 'C2ORF77 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
C2ORF77 MUTATED 3 2 0 4
C2ORF77 WILD-TYPE 127 76 68 192
'C2ORF77 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.177 (Fisher's exact test), Q value = 0.48

Table S3050.  Gene #274: 'C2ORF77 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
C2ORF77 MUTATED 1 3 1 0 2 0 1 1 0
C2ORF77 WILD-TYPE 39 59 27 80 67 48 42 27 74
'DHRS7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0569 (Fisher's exact test), Q value = 0.26

Table S3051.  Gene #275: 'DHRS7 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
DHRS7 MUTATED 8 2 0 0
DHRS7 WILD-TYPE 170 181 101 20
'DHRS7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.302 (Fisher's exact test), Q value = 0.63

Table S3052.  Gene #275: 'DHRS7 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
DHRS7 MUTATED 5 1 3
DHRS7 WILD-TYPE 82 79 97
'DHRS7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.514 (Fisher's exact test), Q value = 0.84

Table S3053.  Gene #275: 'DHRS7 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
DHRS7 MUTATED 1 3 5
DHRS7 WILD-TYPE 88 157 133
'DHRS7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.329 (Fisher's exact test), Q value = 0.66

Table S3054.  Gene #275: 'DHRS7 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
DHRS7 MUTATED 6 1 2
DHRS7 WILD-TYPE 176 132 70
'DHRS7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.212 (Fisher's exact test), Q value = 0.52

Table S3055.  Gene #275: 'DHRS7 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
DHRS7 MUTATED 1 4 3 2
DHRS7 WILD-TYPE 111 92 89 184
'DHRS7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00444 (Fisher's exact test), Q value = 0.061

Table S3056.  Gene #275: 'DHRS7 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
DHRS7 MUTATED 0 1 5 1 1 0 2
DHRS7 WILD-TYPE 60 49 44 39 62 125 97

Figure S1008.  Get High-res Image Gene #275: 'DHRS7 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'DHRS7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.126 (Fisher's exact test), Q value = 0.39

Table S3057.  Gene #275: 'DHRS7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
DHRS7 MUTATED 5 3 0 2
DHRS7 WILD-TYPE 125 75 68 194
'DHRS7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.113 (Fisher's exact test), Q value = 0.37

Table S3058.  Gene #275: 'DHRS7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
DHRS7 MUTATED 2 4 1 0 2 0 0 0 1
DHRS7 WILD-TYPE 38 58 27 80 67 48 43 28 73
'PANK3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0741 (Fisher's exact test), Q value = 0.29

Table S3059.  Gene #276: 'PANK3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
PANK3 MUTATED 2 0 0 2
PANK3 WILD-TYPE 44 58 64 41
'PANK3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.556 (Fisher's exact test), Q value = 0.87

Table S3060.  Gene #276: 'PANK3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
PANK3 MUTATED 2 1 1
PANK3 WILD-TYPE 49 82 76
'PANK3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.904 (Fisher's exact test), Q value = 1

Table S3061.  Gene #276: 'PANK3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
PANK3 MUTATED 3 2 1 0
PANK3 WILD-TYPE 175 181 100 20
'PANK3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.513 (Fisher's exact test), Q value = 0.83

Table S3062.  Gene #276: 'PANK3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
PANK3 MUTATED 2 0 1
PANK3 WILD-TYPE 85 80 99
'PANK3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.434 (Fisher's exact test), Q value = 0.76

Table S3063.  Gene #276: 'PANK3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
PANK3 MUTATED 0 4 3
PANK3 WILD-TYPE 89 156 135
'PANK3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.886 (Fisher's exact test), Q value = 1

Table S3064.  Gene #276: 'PANK3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
PANK3 MUTATED 3 3 1
PANK3 WILD-TYPE 179 130 71
'PANK3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.912 (Fisher's exact test), Q value = 1

Table S3065.  Gene #276: 'PANK3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
PANK3 MUTATED 1 1 1 4
PANK3 WILD-TYPE 111 95 91 182
'PANK3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.33 (Fisher's exact test), Q value = 0.66

Table S3066.  Gene #276: 'PANK3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
PANK3 MUTATED 1 0 1 1 1 0 3
PANK3 WILD-TYPE 59 50 48 39 62 125 96
'PANK3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.904 (Fisher's exact test), Q value = 1

Table S3067.  Gene #276: 'PANK3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
PANK3 MUTATED 2 1 0 4
PANK3 WILD-TYPE 128 77 68 192
'PANK3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0124 (Fisher's exact test), Q value = 0.11

Table S3068.  Gene #276: 'PANK3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
PANK3 MUTATED 2 0 1 0 4 0 0 0 0
PANK3 WILD-TYPE 38 62 27 80 65 48 43 28 74

Figure S1009.  Get High-res Image Gene #276: 'PANK3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'G3BP2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0078 (Fisher's exact test), Q value = 0.082

Table S3069.  Gene #277: 'G3BP2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
G3BP2 MUTATED 0 0 0 3
G3BP2 WILD-TYPE 46 58 64 40

Figure S1010.  Get High-res Image Gene #277: 'G3BP2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'G3BP2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S3070.  Gene #277: 'G3BP2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
G3BP2 MUTATED 1 1 1
G3BP2 WILD-TYPE 50 82 76
'G3BP2 MUTATION STATUS' versus 'CN_CNMF'

P value = 8e-04 (Fisher's exact test), Q value = 0.021

Table S3071.  Gene #277: 'G3BP2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
G3BP2 MUTATED 10 0 0 0
G3BP2 WILD-TYPE 168 183 101 20

Figure S1011.  Get High-res Image Gene #277: 'G3BP2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'G3BP2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.126 (Fisher's exact test), Q value = 0.39

Table S3072.  Gene #277: 'G3BP2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
G3BP2 MUTATED 2 0 5
G3BP2 WILD-TYPE 85 80 95
'G3BP2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0328 (Fisher's exact test), Q value = 0.18

Table S3073.  Gene #277: 'G3BP2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
G3BP2 MUTATED 0 2 7
G3BP2 WILD-TYPE 89 158 131

Figure S1012.  Get High-res Image Gene #277: 'G3BP2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'G3BP2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.165 (Fisher's exact test), Q value = 0.46

Table S3074.  Gene #277: 'G3BP2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
G3BP2 MUTATED 7 2 0
G3BP2 WILD-TYPE 175 131 72
'G3BP2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0122 (Fisher's exact test), Q value = 0.11

Table S3075.  Gene #277: 'G3BP2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
G3BP2 MUTATED 0 1 6 3
G3BP2 WILD-TYPE 112 95 86 183

Figure S1013.  Get High-res Image Gene #277: 'G3BP2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'G3BP2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0259 (Fisher's exact test), Q value = 0.16

Table S3076.  Gene #277: 'G3BP2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
G3BP2 MUTATED 2 0 4 1 1 0 2
G3BP2 WILD-TYPE 58 50 45 39 62 125 97

Figure S1014.  Get High-res Image Gene #277: 'G3BP2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'G3BP2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0834 (Fisher's exact test), Q value = 0.31

Table S3077.  Gene #277: 'G3BP2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
G3BP2 MUTATED 6 1 0 2
G3BP2 WILD-TYPE 124 77 68 194
'G3BP2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.191 (Fisher's exact test), Q value = 0.49

Table S3078.  Gene #277: 'G3BP2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
G3BP2 MUTATED 0 2 2 1 3 0 1 0 0
G3BP2 WILD-TYPE 40 60 26 79 66 48 42 28 74
'G3BP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0255 (Fisher's exact test), Q value = 0.16

Table S3079.  Gene #277: 'G3BP2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
G3BP2 MUTATED 1 0 0 3
G3BP2 WILD-TYPE 32 31 27 16

Figure S1015.  Get High-res Image Gene #277: 'G3BP2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'G3BP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.871 (Fisher's exact test), Q value = 1

Table S3080.  Gene #277: 'G3BP2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
G3BP2 MUTATED 3 0 1 0
G3BP2 WILD-TYPE 51 10 23 22
'TET3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.942 (Fisher's exact test), Q value = 1

Table S3081.  Gene #278: 'TET3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
TET3 MUTATED 2 1 2 1
TET3 WILD-TYPE 44 57 62 42
'TET3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.657 (Fisher's exact test), Q value = 0.94

Table S3082.  Gene #278: 'TET3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
TET3 MUTATED 2 3 1
TET3 WILD-TYPE 49 80 76
'TET3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00301 (Fisher's exact test), Q value = 0.049

Table S3083.  Gene #278: 'TET3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
TET3 MUTATED 16 7 0 1
TET3 WILD-TYPE 162 176 101 19

Figure S1016.  Get High-res Image Gene #278: 'TET3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'TET3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0316 (Fisher's exact test), Q value = 0.18

Table S3084.  Gene #278: 'TET3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
TET3 MUTATED 2 3 11
TET3 WILD-TYPE 85 77 89

Figure S1017.  Get High-res Image Gene #278: 'TET3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'TET3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.831 (Fisher's exact test), Q value = 1

Table S3085.  Gene #278: 'TET3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
TET3 MUTATED 4 7 8
TET3 WILD-TYPE 85 153 130
'TET3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.268 (Fisher's exact test), Q value = 0.59

Table S3086.  Gene #278: 'TET3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
TET3 MUTATED 7 10 2
TET3 WILD-TYPE 175 123 70
'TET3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0885 (Fisher's exact test), Q value = 0.32

Table S3087.  Gene #278: 'TET3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
TET3 MUTATED 4 10 3 7
TET3 WILD-TYPE 108 86 89 179
'TET3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00619 (Fisher's exact test), Q value = 0.072

Table S3088.  Gene #278: 'TET3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
TET3 MUTATED 3 1 9 2 1 3 5
TET3 WILD-TYPE 57 49 40 38 62 122 94

Figure S1018.  Get High-res Image Gene #278: 'TET3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'TET3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.151 (Fisher's exact test), Q value = 0.44

Table S3089.  Gene #278: 'TET3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
TET3 MUTATED 11 1 3 9
TET3 WILD-TYPE 119 77 65 187
'TET3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0066 (Fisher's exact test), Q value = 0.074

Table S3090.  Gene #278: 'TET3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
TET3 MUTATED 2 1 0 3 12 2 1 0 3
TET3 WILD-TYPE 38 61 28 77 57 46 42 28 71

Figure S1019.  Get High-res Image Gene #278: 'TET3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'TET3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00038 (Fisher's exact test), Q value = 0.013

Table S3091.  Gene #278: 'TET3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
TET3 MUTATED 0 0 1 5
TET3 WILD-TYPE 33 31 26 14

Figure S1020.  Get High-res Image Gene #278: 'TET3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'TET3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.643 (Fisher's exact test), Q value = 0.93

Table S3092.  Gene #278: 'TET3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
TET3 MUTATED 2 1 2 1
TET3 WILD-TYPE 52 9 22 21
'C12ORF5 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3093.  Gene #279: 'C12ORF5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
C12ORF5 MUTATED 2 3 1 0
C12ORF5 WILD-TYPE 176 180 100 20
'C12ORF5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.875 (Fisher's exact test), Q value = 1

Table S3094.  Gene #279: 'C12ORF5 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
C12ORF5 MUTATED 2 1 3
C12ORF5 WILD-TYPE 85 79 97
'C12ORF5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0781 (Fisher's exact test), Q value = 0.3

Table S3095.  Gene #279: 'C12ORF5 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
C12ORF5 MUTATED 0 1 5
C12ORF5 WILD-TYPE 89 159 133
'C12ORF5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.337 (Fisher's exact test), Q value = 0.66

Table S3096.  Gene #279: 'C12ORF5 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
C12ORF5 MUTATED 5 1 0
C12ORF5 WILD-TYPE 177 132 72
'C12ORF5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0618 (Fisher's exact test), Q value = 0.27

Table S3097.  Gene #279: 'C12ORF5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
C12ORF5 MUTATED 2 3 1 0
C12ORF5 WILD-TYPE 110 93 91 186
'C12ORF5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00984 (Fisher's exact test), Q value = 0.094

Table S3098.  Gene #279: 'C12ORF5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
C12ORF5 MUTATED 2 3 0 0 1 0 0
C12ORF5 WILD-TYPE 58 47 49 40 62 125 99

Figure S1021.  Get High-res Image Gene #279: 'C12ORF5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'C12ORF5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.15 (Fisher's exact test), Q value = 0.43

Table S3099.  Gene #279: 'C12ORF5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
C12ORF5 MUTATED 4 0 1 1
C12ORF5 WILD-TYPE 126 78 67 195
'C12ORF5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.37 (Fisher's exact test), Q value = 0.7

Table S3100.  Gene #279: 'C12ORF5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
C12ORF5 MUTATED 0 0 1 3 0 0 1 0 1
C12ORF5 WILD-TYPE 40 62 27 77 69 48 42 28 73
'GPR98 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 8e-05 (Fisher's exact test), Q value = 0.0045

Table S3101.  Gene #280: 'GPR98 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
GPR98 MUTATED 9 0 2 7
GPR98 WILD-TYPE 37 58 62 36

Figure S1022.  Get High-res Image Gene #280: 'GPR98 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'GPR98 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00024 (Fisher's exact test), Q value = 0.0094

Table S3102.  Gene #280: 'GPR98 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
GPR98 MUTATED 12 3 3
GPR98 WILD-TYPE 39 80 74

Figure S1023.  Get High-res Image Gene #280: 'GPR98 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'GPR98 MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S3103.  Gene #280: 'GPR98 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
GPR98 MUTATED 45 15 9 0
GPR98 WILD-TYPE 133 168 92 20

Figure S1024.  Get High-res Image Gene #280: 'GPR98 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'GPR98 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.189 (Fisher's exact test), Q value = 0.49

Table S3104.  Gene #280: 'GPR98 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
GPR98 MUTATED 20 10 21
GPR98 WILD-TYPE 67 70 79
'GPR98 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0243 (Fisher's exact test), Q value = 0.16

Table S3105.  Gene #280: 'GPR98 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
GPR98 MUTATED 8 19 29
GPR98 WILD-TYPE 81 141 109

Figure S1025.  Get High-res Image Gene #280: 'GPR98 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'GPR98 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.752 (Fisher's exact test), Q value = 1

Table S3106.  Gene #280: 'GPR98 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
GPR98 MUTATED 29 17 10
GPR98 WILD-TYPE 153 116 62
'GPR98 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0244 (Fisher's exact test), Q value = 0.16

Table S3107.  Gene #280: 'GPR98 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
GPR98 MUTATED 14 22 15 18
GPR98 WILD-TYPE 98 74 77 168

Figure S1026.  Get High-res Image Gene #280: 'GPR98 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'GPR98 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S3108.  Gene #280: 'GPR98 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
GPR98 MUTATED 10 5 23 6 6 3 16
GPR98 WILD-TYPE 50 45 26 34 57 122 83

Figure S1027.  Get High-res Image Gene #280: 'GPR98 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'GPR98 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0949 (Fisher's exact test), Q value = 0.34

Table S3109.  Gene #280: 'GPR98 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
GPR98 MUTATED 27 11 6 24
GPR98 WILD-TYPE 103 67 62 172
'GPR98 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00172 (Fisher's exact test), Q value = 0.034

Table S3110.  Gene #280: 'GPR98 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
GPR98 MUTATED 9 11 3 9 18 2 8 5 3
GPR98 WILD-TYPE 31 51 25 71 51 46 35 23 71

Figure S1028.  Get High-res Image Gene #280: 'GPR98 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'GPR98 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.182 (Fisher's exact test), Q value = 0.48

Table S3111.  Gene #280: 'GPR98 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
GPR98 MUTATED 3 4 3 6
GPR98 WILD-TYPE 30 27 24 13
'GPR98 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.142 (Fisher's exact test), Q value = 0.42

Table S3112.  Gene #280: 'GPR98 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
GPR98 MUTATED 9 0 6 1
GPR98 WILD-TYPE 45 10 18 21
'MAGEA1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.661 (Fisher's exact test), Q value = 0.95

Table S3113.  Gene #281: 'MAGEA1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
MAGEA1 MUTATED 6 4 3 1
MAGEA1 WILD-TYPE 172 179 98 19
'MAGEA1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.182 (Fisher's exact test), Q value = 0.48

Table S3114.  Gene #281: 'MAGEA1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
MAGEA1 MUTATED 8 3 3
MAGEA1 WILD-TYPE 79 77 97
'MAGEA1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.245 (Fisher's exact test), Q value = 0.57

Table S3115.  Gene #281: 'MAGEA1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
MAGEA1 MUTATED 1 4 7
MAGEA1 WILD-TYPE 88 156 131
'MAGEA1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.104 (Fisher's exact test), Q value = 0.36

Table S3116.  Gene #281: 'MAGEA1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
MAGEA1 MUTATED 9 3 0
MAGEA1 WILD-TYPE 173 130 72
'MAGEA1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0175 (Fisher's exact test), Q value = 0.13

Table S3117.  Gene #281: 'MAGEA1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
MAGEA1 MUTATED 3 4 6 1
MAGEA1 WILD-TYPE 109 92 86 185

Figure S1029.  Get High-res Image Gene #281: 'MAGEA1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'MAGEA1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00417 (Fisher's exact test), Q value = 0.059

Table S3118.  Gene #281: 'MAGEA1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
MAGEA1 MUTATED 1 2 5 2 3 0 1
MAGEA1 WILD-TYPE 59 48 44 38 60 125 98

Figure S1030.  Get High-res Image Gene #281: 'MAGEA1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'MAGEA1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0539 (Fisher's exact test), Q value = 0.25

Table S3119.  Gene #281: 'MAGEA1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
MAGEA1 MUTATED 7 4 0 3
MAGEA1 WILD-TYPE 123 74 68 193
'MAGEA1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.407 (Fisher's exact test), Q value = 0.73

Table S3120.  Gene #281: 'MAGEA1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
MAGEA1 MUTATED 2 4 0 1 2 1 3 0 1
MAGEA1 WILD-TYPE 38 58 28 79 67 47 40 28 73
'MAGEA1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.138 (Fisher's exact test), Q value = 0.41

Table S3121.  Gene #281: 'MAGEA1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
MAGEA1 MUTATED 1 4 0 2
MAGEA1 WILD-TYPE 32 27 27 17
'MAGEA1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.492 (Fisher's exact test), Q value = 0.82

Table S3122.  Gene #281: 'MAGEA1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
MAGEA1 MUTATED 5 1 1 0
MAGEA1 WILD-TYPE 49 9 23 22
'HNF1B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.74 (Fisher's exact test), Q value = 1

Table S3123.  Gene #282: 'HNF1B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
HNF1B MUTATED 5 4 1 0
HNF1B WILD-TYPE 173 179 100 20
'HNF1B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.128 (Fisher's exact test), Q value = 0.4

Table S3124.  Gene #282: 'HNF1B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
HNF1B MUTATED 1 1 6
HNF1B WILD-TYPE 86 79 94
'HNF1B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.573 (Fisher's exact test), Q value = 0.88

Table S3125.  Gene #282: 'HNF1B MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
HNF1B MUTATED 3 4 2
HNF1B WILD-TYPE 86 156 136
'HNF1B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.822 (Fisher's exact test), Q value = 1

Table S3126.  Gene #282: 'HNF1B MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
HNF1B MUTATED 4 4 1
HNF1B WILD-TYPE 178 129 71
'HNF1B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.397 (Fisher's exact test), Q value = 0.72

Table S3127.  Gene #282: 'HNF1B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
HNF1B MUTATED 2 4 2 2
HNF1B WILD-TYPE 110 92 90 184
'HNF1B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0344 (Fisher's exact test), Q value = 0.19

Table S3128.  Gene #282: 'HNF1B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
HNF1B MUTATED 3 2 3 0 1 1 0
HNF1B WILD-TYPE 57 48 46 40 62 124 99

Figure S1031.  Get High-res Image Gene #282: 'HNF1B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'HNF1B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.129 (Fisher's exact test), Q value = 0.4

Table S3129.  Gene #282: 'HNF1B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
HNF1B MUTATED 5 3 0 2
HNF1B WILD-TYPE 125 75 68 194
'HNF1B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.548 (Fisher's exact test), Q value = 0.87

Table S3130.  Gene #282: 'HNF1B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
HNF1B MUTATED 2 2 0 1 3 1 1 0 0
HNF1B WILD-TYPE 38 60 28 79 66 47 42 28 74
'HNF1B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.783 (Fisher's exact test), Q value = 1

Table S3131.  Gene #282: 'HNF1B MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
HNF1B MUTATED 1 0 1 1
HNF1B WILD-TYPE 32 31 26 18
'HNF1B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.447 (Fisher's exact test), Q value = 0.77

Table S3132.  Gene #282: 'HNF1B MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
HNF1B MUTATED 1 0 2 0
HNF1B WILD-TYPE 53 10 22 22
'C19ORF66 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.121 (Fisher's exact test), Q value = 0.39

Table S3133.  Gene #283: 'C19ORF66 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
C19ORF66 MUTATED 4 0 0 0
C19ORF66 WILD-TYPE 174 183 101 20
'C19ORF66 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.111 (Fisher's exact test), Q value = 0.37

Table S3134.  Gene #283: 'C19ORF66 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
C19ORF66 MUTATED 0 0 3
C19ORF66 WILD-TYPE 87 80 97
'C19ORF66 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.306 (Fisher's exact test), Q value = 0.64

Table S3135.  Gene #283: 'C19ORF66 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
C19ORF66 MUTATED 0 2 1 1
C19ORF66 WILD-TYPE 112 94 91 185
'C19ORF66 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0732 (Fisher's exact test), Q value = 0.29

Table S3136.  Gene #283: 'C19ORF66 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
C19ORF66 MUTATED 0 0 2 1 0 0 1
C19ORF66 WILD-TYPE 60 50 47 39 63 125 98
'C19ORF66 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.306 (Fisher's exact test), Q value = 0.64

Table S3137.  Gene #283: 'C19ORF66 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
C19ORF66 MUTATED 3 0 0 1
C19ORF66 WILD-TYPE 127 78 68 195
'C19ORF66 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.141 (Fisher's exact test), Q value = 0.42

Table S3138.  Gene #283: 'C19ORF66 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
C19ORF66 MUTATED 1 0 0 0 2 0 0 1 0
C19ORF66 WILD-TYPE 39 62 28 80 67 48 43 27 74
'INPP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.256 (Fisher's exact test), Q value = 0.58

Table S3139.  Gene #284: 'INPP1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
INPP1 MUTATED 3 4 0 1
INPP1 WILD-TYPE 175 179 101 19
'INPP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.594 (Fisher's exact test), Q value = 0.9

Table S3140.  Gene #284: 'INPP1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
INPP1 MUTATED 1 3 2
INPP1 WILD-TYPE 86 77 98
'INPP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3141.  Gene #284: 'INPP1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
INPP1 MUTATED 1 3 3
INPP1 WILD-TYPE 88 157 135
'INPP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S3142.  Gene #284: 'INPP1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
INPP1 MUTATED 4 2 1
INPP1 WILD-TYPE 178 131 71
'INPP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.166 (Fisher's exact test), Q value = 0.46

Table S3143.  Gene #284: 'INPP1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
INPP1 MUTATED 4 0 2 2
INPP1 WILD-TYPE 108 96 90 184
'INPP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.145 (Fisher's exact test), Q value = 0.42

Table S3144.  Gene #284: 'INPP1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
INPP1 MUTATED 2 0 2 2 0 1 1
INPP1 WILD-TYPE 58 50 47 38 63 124 98
'INPP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.569 (Fisher's exact test), Q value = 0.88

Table S3145.  Gene #284: 'INPP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
INPP1 MUTATED 4 1 1 2
INPP1 WILD-TYPE 126 77 67 194
'INPP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.241 (Fisher's exact test), Q value = 0.56

Table S3146.  Gene #284: 'INPP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
INPP1 MUTATED 2 1 1 0 1 1 1 1 0
INPP1 WILD-TYPE 38 61 27 80 68 47 42 27 74
'TRIM24 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.106 (Fisher's exact test), Q value = 0.36

Table S3147.  Gene #285: 'TRIM24 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
TRIM24 MUTATED 3 1 0 2
TRIM24 WILD-TYPE 43 57 64 41
'TRIM24 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.337 (Fisher's exact test), Q value = 0.66

Table S3148.  Gene #285: 'TRIM24 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
TRIM24 MUTATED 3 2 1
TRIM24 WILD-TYPE 48 81 76
'TRIM24 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.274 (Fisher's exact test), Q value = 0.6

Table S3149.  Gene #285: 'TRIM24 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
TRIM24 MUTATED 9 7 2 2
TRIM24 WILD-TYPE 169 176 99 18
'TRIM24 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.618 (Fisher's exact test), Q value = 0.92

Table S3150.  Gene #285: 'TRIM24 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
TRIM24 MUTATED 4 3 7
TRIM24 WILD-TYPE 83 77 93
'TRIM24 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.528 (Fisher's exact test), Q value = 0.85

Table S3151.  Gene #285: 'TRIM24 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
TRIM24 MUTATED 2 9 7
TRIM24 WILD-TYPE 87 151 131
'TRIM24 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.311 (Fisher's exact test), Q value = 0.64

Table S3152.  Gene #285: 'TRIM24 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
TRIM24 MUTATED 11 6 1
TRIM24 WILD-TYPE 171 127 71
'TRIM24 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.557 (Fisher's exact test), Q value = 0.87

Table S3153.  Gene #285: 'TRIM24 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
TRIM24 MUTATED 5 5 5 5
TRIM24 WILD-TYPE 107 91 87 181
'TRIM24 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.398 (Fisher's exact test), Q value = 0.72

Table S3154.  Gene #285: 'TRIM24 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
TRIM24 MUTATED 3 3 4 2 3 2 3
TRIM24 WILD-TYPE 57 47 45 38 60 123 96
'TRIM24 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.225 (Fisher's exact test), Q value = 0.54

Table S3155.  Gene #285: 'TRIM24 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
TRIM24 MUTATED 7 5 2 4
TRIM24 WILD-TYPE 123 73 66 192
'TRIM24 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0781 (Fisher's exact test), Q value = 0.3

Table S3156.  Gene #285: 'TRIM24 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
TRIM24 MUTATED 2 5 1 2 3 0 4 1 0
TRIM24 WILD-TYPE 38 57 27 78 66 48 39 27 74
'TRIM24 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.269 (Fisher's exact test), Q value = 0.59

Table S3157.  Gene #285: 'TRIM24 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
TRIM24 MUTATED 3 2 1 4
TRIM24 WILD-TYPE 30 29 26 15
'TRIM24 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.616 (Fisher's exact test), Q value = 0.91

Table S3158.  Gene #285: 'TRIM24 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
TRIM24 MUTATED 7 0 1 2
TRIM24 WILD-TYPE 47 10 23 20
'C12ORF40 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0635 (Fisher's exact test), Q value = 0.27

Table S3159.  Gene #286: 'C12ORF40 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
C12ORF40 MUTATED 1 0 0 2
C12ORF40 WILD-TYPE 45 58 64 41
'C12ORF40 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.182 (Fisher's exact test), Q value = 0.48

Table S3160.  Gene #286: 'C12ORF40 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
C12ORF40 MUTATED 2 0 1
C12ORF40 WILD-TYPE 49 83 76
'C12ORF40 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.142 (Fisher's exact test), Q value = 0.42

Table S3161.  Gene #286: 'C12ORF40 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
C12ORF40 MUTATED 14 5 4 1
C12ORF40 WILD-TYPE 164 178 97 19
'C12ORF40 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.507 (Fisher's exact test), Q value = 0.83

Table S3162.  Gene #286: 'C12ORF40 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
C12ORF40 MUTATED 8 4 9
C12ORF40 WILD-TYPE 79 76 91
'C12ORF40 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.532 (Fisher's exact test), Q value = 0.85

Table S3163.  Gene #286: 'C12ORF40 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
C12ORF40 MUTATED 5 6 9
C12ORF40 WILD-TYPE 84 154 129
'C12ORF40 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.827 (Fisher's exact test), Q value = 1

Table S3164.  Gene #286: 'C12ORF40 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
C12ORF40 MUTATED 11 6 3
C12ORF40 WILD-TYPE 171 127 69
'C12ORF40 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00053 (Fisher's exact test), Q value = 0.016

Table S3165.  Gene #286: 'C12ORF40 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
C12ORF40 MUTATED 5 12 5 2
C12ORF40 WILD-TYPE 107 84 87 184

Figure S1032.  Get High-res Image Gene #286: 'C12ORF40 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'C12ORF40 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 2e-05 (Fisher's exact test), Q value = 0.0017

Table S3166.  Gene #286: 'C12ORF40 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
C12ORF40 MUTATED 3 1 8 6 4 0 2
C12ORF40 WILD-TYPE 57 49 41 34 59 125 97

Figure S1033.  Get High-res Image Gene #286: 'C12ORF40 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'C12ORF40 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00467 (Fisher's exact test), Q value = 0.062

Table S3167.  Gene #286: 'C12ORF40 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
C12ORF40 MUTATED 14 3 2 4
C12ORF40 WILD-TYPE 116 75 66 192

Figure S1034.  Get High-res Image Gene #286: 'C12ORF40 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'C12ORF40 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00085 (Fisher's exact test), Q value = 0.022

Table S3168.  Gene #286: 'C12ORF40 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
C12ORF40 MUTATED 5 3 1 0 8 1 4 1 0
C12ORF40 WILD-TYPE 35 59 27 80 61 47 39 27 74

Figure S1035.  Get High-res Image Gene #286: 'C12ORF40 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'C12ORF40 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.725 (Fisher's exact test), Q value = 0.99

Table S3169.  Gene #286: 'C12ORF40 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
C12ORF40 MUTATED 2 1 1 2
C12ORF40 WILD-TYPE 31 30 26 17
'C12ORF40 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.364 (Fisher's exact test), Q value = 0.69

Table S3170.  Gene #286: 'C12ORF40 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
C12ORF40 MUTATED 2 0 3 1
C12ORF40 WILD-TYPE 52 10 21 21
'SNAI2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.345 (Fisher's exact test), Q value = 0.67

Table S3171.  Gene #287: 'SNAI2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
SNAI2 MUTATED 7 2 2 0
SNAI2 WILD-TYPE 171 181 99 20
'SNAI2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.435 (Fisher's exact test), Q value = 0.76

Table S3172.  Gene #287: 'SNAI2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
SNAI2 MUTATED 3 1 5
SNAI2 WILD-TYPE 84 79 95
'SNAI2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0132 (Fisher's exact test), Q value = 0.11

Table S3173.  Gene #287: 'SNAI2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
SNAI2 MUTATED 3 0 6
SNAI2 WILD-TYPE 86 160 132

Figure S1036.  Get High-res Image Gene #287: 'SNAI2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'SNAI2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.19 (Fisher's exact test), Q value = 0.49

Table S3174.  Gene #287: 'SNAI2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
SNAI2 MUTATED 7 1 1
SNAI2 WILD-TYPE 175 132 71
'SNAI2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.021 (Fisher's exact test), Q value = 0.15

Table S3175.  Gene #287: 'SNAI2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
SNAI2 MUTATED 0 6 2 3
SNAI2 WILD-TYPE 112 90 90 183

Figure S1037.  Get High-res Image Gene #287: 'SNAI2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'SNAI2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.228 (Fisher's exact test), Q value = 0.55

Table S3176.  Gene #287: 'SNAI2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
SNAI2 MUTATED 0 3 2 1 2 1 2
SNAI2 WILD-TYPE 60 47 47 39 61 124 97
'SNAI2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.31 (Fisher's exact test), Q value = 0.64

Table S3177.  Gene #287: 'SNAI2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
SNAI2 MUTATED 5 2 1 2
SNAI2 WILD-TYPE 125 76 67 194
'SNAI2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.559 (Fisher's exact test), Q value = 0.87

Table S3178.  Gene #287: 'SNAI2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
SNAI2 MUTATED 2 2 1 2 2 0 1 0 0
SNAI2 WILD-TYPE 38 60 27 78 67 48 42 28 74
'DDX5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.163 (Fisher's exact test), Q value = 0.46

Table S3179.  Gene #288: 'DDX5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
DDX5 MUTATED 5 1 2 1
DDX5 WILD-TYPE 173 182 99 19
'DDX5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.636 (Fisher's exact test), Q value = 0.93

Table S3180.  Gene #288: 'DDX5 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
DDX5 MUTATED 2 1 4
DDX5 WILD-TYPE 85 79 96
'DDX5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0311 (Fisher's exact test), Q value = 0.18

Table S3181.  Gene #288: 'DDX5 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
DDX5 MUTATED 2 0 5
DDX5 WILD-TYPE 87 160 133

Figure S1038.  Get High-res Image Gene #288: 'DDX5 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'DDX5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.55 (Fisher's exact test), Q value = 0.87

Table S3182.  Gene #288: 'DDX5 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
DDX5 MUTATED 5 1 1
DDX5 WILD-TYPE 177 132 71
'DDX5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.084 (Fisher's exact test), Q value = 0.31

Table S3183.  Gene #288: 'DDX5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
DDX5 MUTATED 1 5 1 2
DDX5 WILD-TYPE 111 91 91 184
'DDX5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.154 (Fisher's exact test), Q value = 0.44

Table S3184.  Gene #288: 'DDX5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
DDX5 MUTATED 1 3 1 1 1 0 2
DDX5 WILD-TYPE 59 47 48 39 62 125 97
'DDX5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.204 (Fisher's exact test), Q value = 0.51

Table S3185.  Gene #288: 'DDX5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
DDX5 MUTATED 5 1 0 2
DDX5 WILD-TYPE 125 77 68 194
'DDX5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.781 (Fisher's exact test), Q value = 1

Table S3186.  Gene #288: 'DDX5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
DDX5 MUTATED 1 1 1 2 2 1 0 0 0
DDX5 WILD-TYPE 39 61 27 78 67 47 43 28 74
'PTPDC1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.482 (Fisher's exact test), Q value = 0.81

Table S3187.  Gene #289: 'PTPDC1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
PTPDC1 MUTATED 1 2 0 1
PTPDC1 WILD-TYPE 45 56 64 42
'PTPDC1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S3188.  Gene #289: 'PTPDC1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
PTPDC1 MUTATED 1 2 1
PTPDC1 WILD-TYPE 50 81 76
'PTPDC1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.276 (Fisher's exact test), Q value = 0.6

Table S3189.  Gene #289: 'PTPDC1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
PTPDC1 MUTATED 7 2 1 0
PTPDC1 WILD-TYPE 171 181 100 20
'PTPDC1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.253 (Fisher's exact test), Q value = 0.58

Table S3190.  Gene #289: 'PTPDC1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
PTPDC1 MUTATED 2 0 4
PTPDC1 WILD-TYPE 85 80 96
'PTPDC1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.831 (Fisher's exact test), Q value = 1

Table S3191.  Gene #289: 'PTPDC1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
PTPDC1 MUTATED 1 4 4
PTPDC1 WILD-TYPE 88 156 134
'PTPDC1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S3192.  Gene #289: 'PTPDC1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
PTPDC1 MUTATED 5 3 1
PTPDC1 WILD-TYPE 177 130 71
'PTPDC1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.172 (Fisher's exact test), Q value = 0.47

Table S3193.  Gene #289: 'PTPDC1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
PTPDC1 MUTATED 0 4 2 4
PTPDC1 WILD-TYPE 112 92 90 182
'PTPDC1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00231 (Fisher's exact test), Q value = 0.041

Table S3194.  Gene #289: 'PTPDC1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
PTPDC1 MUTATED 1 0 6 0 0 2 1
PTPDC1 WILD-TYPE 59 50 43 40 63 123 98

Figure S1039.  Get High-res Image Gene #289: 'PTPDC1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'PTPDC1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.88 (Fisher's exact test), Q value = 1

Table S3195.  Gene #289: 'PTPDC1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
PTPDC1 MUTATED 4 1 1 4
PTPDC1 WILD-TYPE 126 77 67 192
'PTPDC1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.285 (Fisher's exact test), Q value = 0.61

Table S3196.  Gene #289: 'PTPDC1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
PTPDC1 MUTATED 0 2 0 1 5 0 1 0 1
PTPDC1 WILD-TYPE 40 60 28 79 64 48 42 28 73
'BAG4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0174 (Fisher's exact test), Q value = 0.13

Table S3197.  Gene #290: 'BAG4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
BAG4 MUTATED 6 0 1 1
BAG4 WILD-TYPE 172 183 100 19

Figure S1040.  Get High-res Image Gene #290: 'BAG4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'BAG4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.383 (Fisher's exact test), Q value = 0.71

Table S3198.  Gene #290: 'BAG4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
BAG4 MUTATED 1 1 4
BAG4 WILD-TYPE 86 79 96
'BAG4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3199.  Gene #290: 'BAG4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
BAG4 MUTATED 1 2 2
BAG4 WILD-TYPE 88 158 136
'BAG4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.716 (Fisher's exact test), Q value = 0.99

Table S3200.  Gene #290: 'BAG4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
BAG4 MUTATED 3 2 0
BAG4 WILD-TYPE 179 131 72
'BAG4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.257 (Fisher's exact test), Q value = 0.58

Table S3201.  Gene #290: 'BAG4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
BAG4 MUTATED 1 4 1 2
BAG4 WILD-TYPE 111 92 91 184
'BAG4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0412 (Fisher's exact test), Q value = 0.21

Table S3202.  Gene #290: 'BAG4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
BAG4 MUTATED 0 2 3 0 1 0 2
BAG4 WILD-TYPE 60 48 46 40 62 125 97

Figure S1041.  Get High-res Image Gene #290: 'BAG4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'BAG4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.491 (Fisher's exact test), Q value = 0.82

Table S3203.  Gene #290: 'BAG4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
BAG4 MUTATED 4 1 0 3
BAG4 WILD-TYPE 126 77 68 193
'BAG4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.141 (Fisher's exact test), Q value = 0.42

Table S3204.  Gene #290: 'BAG4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
BAG4 MUTATED 2 1 0 1 4 0 0 0 0
BAG4 WILD-TYPE 38 61 28 79 65 48 43 28 74
'BAZ1B MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00729 (Fisher's exact test), Q value = 0.079

Table S3205.  Gene #291: 'BAZ1B MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
BAZ1B MUTATED 4 0 0 2
BAZ1B WILD-TYPE 42 58 64 41

Figure S1042.  Get High-res Image Gene #291: 'BAZ1B MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'BAZ1B MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0719 (Fisher's exact test), Q value = 0.29

Table S3206.  Gene #291: 'BAZ1B MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
BAZ1B MUTATED 4 1 1
BAZ1B WILD-TYPE 47 82 76
'BAZ1B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0101 (Fisher's exact test), Q value = 0.096

Table S3207.  Gene #291: 'BAZ1B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
BAZ1B MUTATED 18 4 5 0
BAZ1B WILD-TYPE 160 179 96 20

Figure S1043.  Get High-res Image Gene #291: 'BAZ1B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'BAZ1B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.779 (Fisher's exact test), Q value = 1

Table S3208.  Gene #291: 'BAZ1B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
BAZ1B MUTATED 8 5 8
BAZ1B WILD-TYPE 79 75 92
'BAZ1B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00388 (Fisher's exact test), Q value = 0.057

Table S3209.  Gene #291: 'BAZ1B MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
BAZ1B MUTATED 1 6 15
BAZ1B WILD-TYPE 88 154 123

Figure S1044.  Get High-res Image Gene #291: 'BAZ1B MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'BAZ1B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.644 (Fisher's exact test), Q value = 0.93

Table S3210.  Gene #291: 'BAZ1B MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
BAZ1B MUTATED 13 6 3
BAZ1B WILD-TYPE 169 127 69
'BAZ1B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00521 (Fisher's exact test), Q value = 0.065

Table S3211.  Gene #291: 'BAZ1B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
BAZ1B MUTATED 2 9 10 6
BAZ1B WILD-TYPE 110 87 82 180

Figure S1045.  Get High-res Image Gene #291: 'BAZ1B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'BAZ1B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00105 (Fisher's exact test), Q value = 0.025

Table S3212.  Gene #291: 'BAZ1B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
BAZ1B MUTATED 2 3 9 3 5 1 4
BAZ1B WILD-TYPE 58 47 40 37 58 124 95

Figure S1046.  Get High-res Image Gene #291: 'BAZ1B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'BAZ1B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0692 (Fisher's exact test), Q value = 0.28

Table S3213.  Gene #291: 'BAZ1B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
BAZ1B MUTATED 10 7 3 5
BAZ1B WILD-TYPE 120 71 65 191
'BAZ1B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 5e-04 (Fisher's exact test), Q value = 0.016

Table S3214.  Gene #291: 'BAZ1B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
BAZ1B MUTATED 2 9 0 3 8 0 3 0 0
BAZ1B WILD-TYPE 38 53 28 77 61 48 40 28 74

Figure S1047.  Get High-res Image Gene #291: 'BAZ1B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'BAZ1B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00247 (Fisher's exact test), Q value = 0.043

Table S3215.  Gene #291: 'BAZ1B MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
BAZ1B MUTATED 0 0 2 4
BAZ1B WILD-TYPE 33 31 25 15

Figure S1048.  Get High-res Image Gene #291: 'BAZ1B MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'BAZ1B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.394 (Fisher's exact test), Q value = 0.72

Table S3216.  Gene #291: 'BAZ1B MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
BAZ1B MUTATED 3 1 2 0
BAZ1B WILD-TYPE 51 9 22 22
'PAQR5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.93 (Fisher's exact test), Q value = 1

Table S3217.  Gene #292: 'PAQR5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
PAQR5 MUTATED 3 4 1 0
PAQR5 WILD-TYPE 175 179 100 20
'PAQR5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.322 (Fisher's exact test), Q value = 0.65

Table S3218.  Gene #292: 'PAQR5 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
PAQR5 MUTATED 1 2 5
PAQR5 WILD-TYPE 86 78 95
'PAQR5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.684 (Fisher's exact test), Q value = 0.96

Table S3219.  Gene #292: 'PAQR5 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
PAQR5 MUTATED 0 2 2
PAQR5 WILD-TYPE 89 158 136
'PAQR5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.83 (Fisher's exact test), Q value = 1

Table S3220.  Gene #292: 'PAQR5 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
PAQR5 MUTATED 2 2 0
PAQR5 WILD-TYPE 180 131 72
'PAQR5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0316 (Fisher's exact test), Q value = 0.18

Table S3221.  Gene #292: 'PAQR5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
PAQR5 MUTATED 2 3 3 0
PAQR5 WILD-TYPE 110 93 89 186

Figure S1049.  Get High-res Image Gene #292: 'PAQR5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'PAQR5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00507 (Fisher's exact test), Q value = 0.064

Table S3222.  Gene #292: 'PAQR5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
PAQR5 MUTATED 1 3 3 0 1 0 0
PAQR5 WILD-TYPE 59 47 46 40 62 125 99

Figure S1050.  Get High-res Image Gene #292: 'PAQR5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'PAQR5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00172 (Fisher's exact test), Q value = 0.034

Table S3223.  Gene #292: 'PAQR5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
PAQR5 MUTATED 7 1 0 0
PAQR5 WILD-TYPE 123 77 68 196

Figure S1051.  Get High-res Image Gene #292: 'PAQR5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'PAQR5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.463 (Fisher's exact test), Q value = 0.79

Table S3224.  Gene #292: 'PAQR5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
PAQR5 MUTATED 2 1 1 1 2 0 1 0 0
PAQR5 WILD-TYPE 38 61 27 79 67 48 42 28 74
'KDM3B MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00728 (Fisher's exact test), Q value = 0.079

Table S3225.  Gene #293: 'KDM3B MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
KDM3B MUTATED 5 1 0 4
KDM3B WILD-TYPE 41 57 64 39

Figure S1052.  Get High-res Image Gene #293: 'KDM3B MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'KDM3B MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0312 (Fisher's exact test), Q value = 0.18

Table S3226.  Gene #293: 'KDM3B MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
KDM3B MUTATED 6 3 1
KDM3B WILD-TYPE 45 80 76

Figure S1053.  Get High-res Image Gene #293: 'KDM3B MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'KDM3B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0272 (Fisher's exact test), Q value = 0.17

Table S3227.  Gene #293: 'KDM3B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
KDM3B MUTATED 20 6 7 1
KDM3B WILD-TYPE 158 177 94 19

Figure S1054.  Get High-res Image Gene #293: 'KDM3B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'KDM3B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.314 (Fisher's exact test), Q value = 0.64

Table S3228.  Gene #293: 'KDM3B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
KDM3B MUTATED 9 4 11
KDM3B WILD-TYPE 78 76 89
'KDM3B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.507 (Fisher's exact test), Q value = 0.83

Table S3229.  Gene #293: 'KDM3B MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
KDM3B MUTATED 4 11 12
KDM3B WILD-TYPE 85 149 126
'KDM3B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.898 (Fisher's exact test), Q value = 1

Table S3230.  Gene #293: 'KDM3B MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
KDM3B MUTATED 14 9 4
KDM3B WILD-TYPE 168 124 68
'KDM3B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.486 (Fisher's exact test), Q value = 0.81

Table S3231.  Gene #293: 'KDM3B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
KDM3B MUTATED 7 6 10 11
KDM3B WILD-TYPE 105 90 82 175
'KDM3B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0387 (Fisher's exact test), Q value = 0.21

Table S3232.  Gene #293: 'KDM3B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
KDM3B MUTATED 4 2 8 3 7 3 7
KDM3B WILD-TYPE 56 48 41 37 56 122 92

Figure S1055.  Get High-res Image Gene #293: 'KDM3B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'KDM3B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.21 (Fisher's exact test), Q value = 0.52

Table S3233.  Gene #293: 'KDM3B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
KDM3B MUTATED 11 9 3 10
KDM3B WILD-TYPE 119 69 65 186
'KDM3B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00168 (Fisher's exact test), Q value = 0.034

Table S3234.  Gene #293: 'KDM3B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
KDM3B MUTATED 7 7 1 2 8 0 5 2 1
KDM3B WILD-TYPE 33 55 27 78 61 48 38 26 73

Figure S1056.  Get High-res Image Gene #293: 'KDM3B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'KDM3B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0613 (Fisher's exact test), Q value = 0.27

Table S3235.  Gene #293: 'KDM3B MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
KDM3B MUTATED 7 1 1 1
KDM3B WILD-TYPE 26 30 26 18
'KDM3B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.704 (Fisher's exact test), Q value = 0.98

Table S3236.  Gene #293: 'KDM3B MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
KDM3B MUTATED 5 1 1 3
KDM3B WILD-TYPE 49 9 23 19
'FAHD2B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0222 (Fisher's exact test), Q value = 0.15

Table S3237.  Gene #294: 'FAHD2B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
FAHD2B MUTATED 6 0 0 0
FAHD2B WILD-TYPE 172 183 101 20

Figure S1057.  Get High-res Image Gene #294: 'FAHD2B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'FAHD2B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0667 (Fisher's exact test), Q value = 0.28

Table S3238.  Gene #294: 'FAHD2B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
FAHD2B MUTATED 1 0 5
FAHD2B WILD-TYPE 86 80 95
'FAHD2B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.511 (Fisher's exact test), Q value = 0.83

Table S3239.  Gene #294: 'FAHD2B MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
FAHD2B MUTATED 0 3 3
FAHD2B WILD-TYPE 89 157 135
'FAHD2B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.58 (Fisher's exact test), Q value = 0.89

Table S3240.  Gene #294: 'FAHD2B MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
FAHD2B MUTATED 3 3 0
FAHD2B WILD-TYPE 179 130 72
'FAHD2B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0081 (Fisher's exact test), Q value = 0.084

Table S3241.  Gene #294: 'FAHD2B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
FAHD2B MUTATED 0 3 3 0
FAHD2B WILD-TYPE 112 93 89 186

Figure S1058.  Get High-res Image Gene #294: 'FAHD2B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'FAHD2B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 4e-05 (Fisher's exact test), Q value = 0.0027

Table S3242.  Gene #294: 'FAHD2B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
FAHD2B MUTATED 0 1 5 0 0 0 0
FAHD2B WILD-TYPE 60 49 44 40 63 125 99

Figure S1059.  Get High-res Image Gene #294: 'FAHD2B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'FAHD2B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.262 (Fisher's exact test), Q value = 0.59

Table S3243.  Gene #294: 'FAHD2B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
FAHD2B MUTATED 4 0 0 2
FAHD2B WILD-TYPE 126 78 68 194
'FAHD2B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.42 (Fisher's exact test), Q value = 0.75

Table S3244.  Gene #294: 'FAHD2B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
FAHD2B MUTATED 1 3 0 1 1 0 0 0 0
FAHD2B WILD-TYPE 39 59 28 79 68 48 43 28 74
'ZCCHC6 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.534 (Fisher's exact test), Q value = 0.85

Table S3245.  Gene #295: 'ZCCHC6 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ZCCHC6 MUTATED 2 2 1 3
ZCCHC6 WILD-TYPE 44 56 63 40
'ZCCHC6 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.595 (Fisher's exact test), Q value = 0.9

Table S3246.  Gene #295: 'ZCCHC6 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ZCCHC6 MUTATED 3 3 2
ZCCHC6 WILD-TYPE 48 80 75
'ZCCHC6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00218 (Fisher's exact test), Q value = 0.04

Table S3247.  Gene #295: 'ZCCHC6 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ZCCHC6 MUTATED 14 1 5 0
ZCCHC6 WILD-TYPE 164 182 96 20

Figure S1060.  Get High-res Image Gene #295: 'ZCCHC6 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ZCCHC6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00222 (Fisher's exact test), Q value = 0.04

Table S3248.  Gene #295: 'ZCCHC6 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ZCCHC6 MUTATED 2 0 10
ZCCHC6 WILD-TYPE 85 80 90

Figure S1061.  Get High-res Image Gene #295: 'ZCCHC6 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'ZCCHC6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.633 (Fisher's exact test), Q value = 0.93

Table S3249.  Gene #295: 'ZCCHC6 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ZCCHC6 MUTATED 2 8 5
ZCCHC6 WILD-TYPE 87 152 133
'ZCCHC6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.13 (Fisher's exact test), Q value = 0.4

Table S3250.  Gene #295: 'ZCCHC6 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ZCCHC6 MUTATED 5 9 1
ZCCHC6 WILD-TYPE 177 124 71
'ZCCHC6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00648 (Fisher's exact test), Q value = 0.074

Table S3251.  Gene #295: 'ZCCHC6 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ZCCHC6 MUTATED 1 10 2 7
ZCCHC6 WILD-TYPE 111 86 90 179

Figure S1062.  Get High-res Image Gene #295: 'ZCCHC6 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'ZCCHC6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0101 (Fisher's exact test), Q value = 0.096

Table S3252.  Gene #295: 'ZCCHC6 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ZCCHC6 MUTATED 1 2 8 0 1 4 4
ZCCHC6 WILD-TYPE 59 48 41 40 62 121 95

Figure S1063.  Get High-res Image Gene #295: 'ZCCHC6 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ZCCHC6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0301 (Fisher's exact test), Q value = 0.18

Table S3253.  Gene #295: 'ZCCHC6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ZCCHC6 MUTATED 10 1 0 8
ZCCHC6 WILD-TYPE 120 77 68 188

Figure S1064.  Get High-res Image Gene #295: 'ZCCHC6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'ZCCHC6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0135 (Fisher's exact test), Q value = 0.11

Table S3254.  Gene #295: 'ZCCHC6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ZCCHC6 MUTATED 1 1 1 2 10 1 2 0 1
ZCCHC6 WILD-TYPE 39 61 27 78 59 47 41 28 73

Figure S1065.  Get High-res Image Gene #295: 'ZCCHC6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'ZCCHC6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00374 (Fisher's exact test), Q value = 0.056

Table S3255.  Gene #295: 'ZCCHC6 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
ZCCHC6 MUTATED 1 0 0 4
ZCCHC6 WILD-TYPE 32 31 27 15

Figure S1066.  Get High-res Image Gene #295: 'ZCCHC6 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'ZCCHC6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.192 (Fisher's exact test), Q value = 0.49

Table S3256.  Gene #295: 'ZCCHC6 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
ZCCHC6 MUTATED 2 0 3 0
ZCCHC6 WILD-TYPE 52 10 21 22
'TNMD MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.372 (Fisher's exact test), Q value = 0.7

Table S3257.  Gene #296: 'TNMD MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
TNMD MUTATED 2 1 0 1
TNMD WILD-TYPE 44 57 64 42
'TNMD MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0622 (Fisher's exact test), Q value = 0.27

Table S3258.  Gene #296: 'TNMD MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
TNMD MUTATED 3 1 0
TNMD WILD-TYPE 48 82 77
'TNMD MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0634 (Fisher's exact test), Q value = 0.27

Table S3259.  Gene #296: 'TNMD MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
TNMD MUTATED 8 1 1 0
TNMD WILD-TYPE 170 182 100 20
'TNMD MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.125 (Fisher's exact test), Q value = 0.39

Table S3260.  Gene #296: 'TNMD MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
TNMD MUTATED 2 0 5
TNMD WILD-TYPE 85 80 95
'TNMD MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.466 (Fisher's exact test), Q value = 0.79

Table S3261.  Gene #296: 'TNMD MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
TNMD MUTATED 3 2 4
TNMD WILD-TYPE 86 158 134
'TNMD MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.74 (Fisher's exact test), Q value = 1

Table S3262.  Gene #296: 'TNMD MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
TNMD MUTATED 5 2 2
TNMD WILD-TYPE 177 131 70
'TNMD MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0757 (Fisher's exact test), Q value = 0.3

Table S3263.  Gene #296: 'TNMD MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
TNMD MUTATED 0 5 2 4
TNMD WILD-TYPE 112 91 90 182
'TNMD MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00685 (Fisher's exact test), Q value = 0.076

Table S3264.  Gene #296: 'TNMD MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
TNMD MUTATED 0 2 5 0 0 1 3
TNMD WILD-TYPE 60 48 44 40 63 124 96

Figure S1067.  Get High-res Image Gene #296: 'TNMD MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'TNMD MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.639 (Fisher's exact test), Q value = 0.93

Table S3265.  Gene #296: 'TNMD MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
TNMD MUTATED 4 2 0 5
TNMD WILD-TYPE 126 76 68 191
'TNMD MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.244 (Fisher's exact test), Q value = 0.57

Table S3266.  Gene #296: 'TNMD MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
TNMD MUTATED 2 2 1 1 4 0 1 0 0
TNMD WILD-TYPE 38 60 27 79 65 48 42 28 74
'TNMD MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.138 (Fisher's exact test), Q value = 0.41

Table S3267.  Gene #296: 'TNMD MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
TNMD MUTATED 1 0 0 2
TNMD WILD-TYPE 32 31 27 17
'TNMD MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S3268.  Gene #296: 'TNMD MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
TNMD MUTATED 2 0 1 0
TNMD WILD-TYPE 52 10 23 22
'RNF182 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0647 (Fisher's exact test), Q value = 0.28

Table S3269.  Gene #297: 'RNF182 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
RNF182 MUTATED 1 0 0 2
RNF182 WILD-TYPE 45 58 64 41
'RNF182 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.621 (Fisher's exact test), Q value = 0.92

Table S3270.  Gene #297: 'RNF182 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
RNF182 MUTATED 0 1 2
RNF182 WILD-TYPE 51 82 75
'RNF182 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.253 (Fisher's exact test), Q value = 0.58

Table S3271.  Gene #297: 'RNF182 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
RNF182 MUTATED 10 4 2 0
RNF182 WILD-TYPE 168 179 99 20
'RNF182 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.942 (Fisher's exact test), Q value = 1

Table S3272.  Gene #297: 'RNF182 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
RNF182 MUTATED 4 4 6
RNF182 WILD-TYPE 83 76 94
'RNF182 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.894 (Fisher's exact test), Q value = 1

Table S3273.  Gene #297: 'RNF182 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
RNF182 MUTATED 4 6 5
RNF182 WILD-TYPE 85 154 133
'RNF182 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.448 (Fisher's exact test), Q value = 0.77

Table S3274.  Gene #297: 'RNF182 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
RNF182 MUTATED 5 6 4
RNF182 WILD-TYPE 177 127 68
'RNF182 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0102 (Fisher's exact test), Q value = 0.097

Table S3275.  Gene #297: 'RNF182 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
RNF182 MUTATED 4 7 3 1
RNF182 WILD-TYPE 108 89 89 185

Figure S1068.  Get High-res Image Gene #297: 'RNF182 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'RNF182 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0106 (Fisher's exact test), Q value = 0.099

Table S3276.  Gene #297: 'RNF182 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
RNF182 MUTATED 3 4 2 3 2 1 0
RNF182 WILD-TYPE 57 46 47 37 61 124 99

Figure S1069.  Get High-res Image Gene #297: 'RNF182 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'RNF182 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.365 (Fisher's exact test), Q value = 0.69

Table S3277.  Gene #297: 'RNF182 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
RNF182 MUTATED 7 1 3 5
RNF182 WILD-TYPE 123 77 65 191
'RNF182 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.81 (Fisher's exact test), Q value = 1

Table S3278.  Gene #297: 'RNF182 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
RNF182 MUTATED 2 1 1 1 4 2 2 1 2
RNF182 WILD-TYPE 38 61 27 79 65 46 41 27 72
'RNF182 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.761 (Fisher's exact test), Q value = 1

Table S3279.  Gene #297: 'RNF182 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
RNF182 MUTATED 1 1 2 0
RNF182 WILD-TYPE 32 30 25 19
'RNF182 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.321 (Fisher's exact test), Q value = 0.65

Table S3280.  Gene #297: 'RNF182 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
RNF182 MUTATED 1 0 1 2
RNF182 WILD-TYPE 53 10 23 20
'ERCC5 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0217 (Fisher's exact test), Q value = 0.15

Table S3281.  Gene #298: 'ERCC5 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ERCC5 MUTATED 2 0 0 3
ERCC5 WILD-TYPE 44 58 64 40

Figure S1070.  Get High-res Image Gene #298: 'ERCC5 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'ERCC5 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0462 (Fisher's exact test), Q value = 0.23

Table S3282.  Gene #298: 'ERCC5 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ERCC5 MUTATED 3 0 2
ERCC5 WILD-TYPE 48 83 75

Figure S1071.  Get High-res Image Gene #298: 'ERCC5 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'ERCC5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00076 (Fisher's exact test), Q value = 0.02

Table S3283.  Gene #298: 'ERCC5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ERCC5 MUTATED 17 5 0 0
ERCC5 WILD-TYPE 161 178 101 20

Figure S1072.  Get High-res Image Gene #298: 'ERCC5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ERCC5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0507 (Fisher's exact test), Q value = 0.24

Table S3284.  Gene #298: 'ERCC5 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ERCC5 MUTATED 3 3 12
ERCC5 WILD-TYPE 84 77 88
'ERCC5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.489 (Fisher's exact test), Q value = 0.82

Table S3285.  Gene #298: 'ERCC5 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ERCC5 MUTATED 3 11 6
ERCC5 WILD-TYPE 86 149 132
'ERCC5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.079 (Fisher's exact test), Q value = 0.3

Table S3286.  Gene #298: 'ERCC5 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ERCC5 MUTATED 5 11 4
ERCC5 WILD-TYPE 177 122 68
'ERCC5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0911 (Fisher's exact test), Q value = 0.33

Table S3287.  Gene #298: 'ERCC5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ERCC5 MUTATED 6 9 3 5
ERCC5 WILD-TYPE 106 87 89 181
'ERCC5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 3e-05 (Fisher's exact test), Q value = 0.0022

Table S3288.  Gene #298: 'ERCC5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ERCC5 MUTATED 6 5 7 0 1 0 4
ERCC5 WILD-TYPE 54 45 42 40 62 125 95

Figure S1073.  Get High-res Image Gene #298: 'ERCC5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ERCC5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.574 (Fisher's exact test), Q value = 0.88

Table S3289.  Gene #298: 'ERCC5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ERCC5 MUTATED 9 3 3 7
ERCC5 WILD-TYPE 121 75 65 189
'ERCC5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.295 (Fisher's exact test), Q value = 0.62

Table S3290.  Gene #298: 'ERCC5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ERCC5 MUTATED 2 3 3 3 6 1 3 0 1
ERCC5 WILD-TYPE 38 59 25 77 63 47 40 28 73
'ERCC5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.835 (Fisher's exact test), Q value = 1

Table S3291.  Gene #298: 'ERCC5 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
ERCC5 MUTATED 3 1 2 1
ERCC5 WILD-TYPE 30 30 25 18
'ERCC5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.398 (Fisher's exact test), Q value = 0.72

Table S3292.  Gene #298: 'ERCC5 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
ERCC5 MUTATED 2 0 3 2
ERCC5 WILD-TYPE 52 10 21 20
'JAK3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.181 (Fisher's exact test), Q value = 0.48

Table S3293.  Gene #299: 'JAK3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
JAK3 MUTATED 3 0 1 1
JAK3 WILD-TYPE 43 58 63 42
'JAK3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0184 (Fisher's exact test), Q value = 0.14

Table S3294.  Gene #299: 'JAK3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
JAK3 MUTATED 4 1 0
JAK3 WILD-TYPE 47 82 77

Figure S1074.  Get High-res Image Gene #299: 'JAK3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'JAK3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.233 (Fisher's exact test), Q value = 0.55

Table S3295.  Gene #299: 'JAK3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
JAK3 MUTATED 14 6 7 1
JAK3 WILD-TYPE 164 177 94 19
'JAK3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.592 (Fisher's exact test), Q value = 0.9

Table S3296.  Gene #299: 'JAK3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
JAK3 MUTATED 5 7 10
JAK3 WILD-TYPE 82 73 90
'JAK3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.756 (Fisher's exact test), Q value = 1

Table S3297.  Gene #299: 'JAK3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
JAK3 MUTATED 3 8 8
JAK3 WILD-TYPE 86 152 130
'JAK3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.952 (Fisher's exact test), Q value = 1

Table S3298.  Gene #299: 'JAK3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
JAK3 MUTATED 10 6 3
JAK3 WILD-TYPE 172 127 69
'JAK3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.133 (Fisher's exact test), Q value = 0.41

Table S3299.  Gene #299: 'JAK3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
JAK3 MUTATED 10 8 3 7
JAK3 WILD-TYPE 102 88 89 179
'JAK3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.08 (Fisher's exact test), Q value = 0.3

Table S3300.  Gene #299: 'JAK3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
JAK3 MUTATED 6 2 6 2 4 2 6
JAK3 WILD-TYPE 54 48 43 38 59 123 93
'JAK3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.061 (Fisher's exact test), Q value = 0.27

Table S3301.  Gene #299: 'JAK3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
JAK3 MUTATED 13 5 1 8
JAK3 WILD-TYPE 117 73 67 188
'JAK3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.244 (Fisher's exact test), Q value = 0.57

Table S3302.  Gene #299: 'JAK3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
JAK3 MUTATED 1 5 2 5 8 1 3 1 1
JAK3 WILD-TYPE 39 57 26 75 61 47 40 27 73
'JAK3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.503 (Fisher's exact test), Q value = 0.83

Table S3303.  Gene #299: 'JAK3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
JAK3 MUTATED 0 2 1 1
JAK3 WILD-TYPE 33 29 26 18
'JAK3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.672 (Fisher's exact test), Q value = 0.95

Table S3304.  Gene #299: 'JAK3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
JAK3 MUTATED 2 0 2 0
JAK3 WILD-TYPE 52 10 22 22
'HM13 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0749 (Fisher's exact test), Q value = 0.29

Table S3305.  Gene #300: 'HM13 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
HM13 MUTATED 3 0 1 1
HM13 WILD-TYPE 175 183 100 19
'HM13 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.153 (Fisher's exact test), Q value = 0.44

Table S3306.  Gene #300: 'HM13 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
HM13 MUTATED 3 1 0
HM13 WILD-TYPE 84 79 100
'HM13 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.542 (Fisher's exact test), Q value = 0.86

Table S3307.  Gene #300: 'HM13 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
HM13 MUTATED 1 1 3
HM13 WILD-TYPE 88 159 135
'HM13 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.102 (Fisher's exact test), Q value = 0.35

Table S3308.  Gene #300: 'HM13 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
HM13 MUTATED 5 0 0
HM13 WILD-TYPE 177 133 72
'HM13 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.564 (Fisher's exact test), Q value = 0.87

Table S3309.  Gene #300: 'HM13 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
HM13 MUTATED 1 1 2 1
HM13 WILD-TYPE 111 95 90 185
'HM13 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.398 (Fisher's exact test), Q value = 0.72

Table S3310.  Gene #300: 'HM13 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
HM13 MUTATED 1 0 1 1 1 0 1
HM13 WILD-TYPE 59 50 48 39 62 125 98
'HM13 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.352 (Fisher's exact test), Q value = 0.68

Table S3311.  Gene #300: 'HM13 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
HM13 MUTATED 2 2 0 1
HM13 WILD-TYPE 128 76 68 195
'HM13 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.16 (Fisher's exact test), Q value = 0.45

Table S3312.  Gene #300: 'HM13 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
HM13 MUTATED 1 3 0 0 1 0 0 0 0
HM13 WILD-TYPE 39 59 28 80 68 48 43 28 74
'RBM10 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.197 (Fisher's exact test), Q value = 0.5

Table S3313.  Gene #301: 'RBM10 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
RBM10 MUTATED 2 1 1 4
RBM10 WILD-TYPE 44 57 63 39
'RBM10 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.252 (Fisher's exact test), Q value = 0.58

Table S3314.  Gene #301: 'RBM10 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
RBM10 MUTATED 3 1 4
RBM10 WILD-TYPE 48 82 73
'RBM10 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.555 (Fisher's exact test), Q value = 0.87

Table S3315.  Gene #301: 'RBM10 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
RBM10 MUTATED 9 5 3 1
RBM10 WILD-TYPE 169 178 98 19
'RBM10 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.18 (Fisher's exact test), Q value = 0.48

Table S3316.  Gene #301: 'RBM10 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
RBM10 MUTATED 1 2 6
RBM10 WILD-TYPE 86 78 94
'RBM10 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.161 (Fisher's exact test), Q value = 0.45

Table S3317.  Gene #301: 'RBM10 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
RBM10 MUTATED 1 10 5
RBM10 WILD-TYPE 88 150 133
'RBM10 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.307 (Fisher's exact test), Q value = 0.64

Table S3318.  Gene #301: 'RBM10 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
RBM10 MUTATED 5 8 3
RBM10 WILD-TYPE 177 125 69
'RBM10 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.285 (Fisher's exact test), Q value = 0.61

Table S3319.  Gene #301: 'RBM10 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
RBM10 MUTATED 3 6 1 7
RBM10 WILD-TYPE 109 90 91 179
'RBM10 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.168 (Fisher's exact test), Q value = 0.46

Table S3320.  Gene #301: 'RBM10 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
RBM10 MUTATED 3 2 4 1 1 1 5
RBM10 WILD-TYPE 57 48 45 39 62 124 94
'RBM10 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.376 (Fisher's exact test), Q value = 0.71

Table S3321.  Gene #301: 'RBM10 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
RBM10 MUTATED 8 1 2 7
RBM10 WILD-TYPE 122 77 66 189
'RBM10 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.408 (Fisher's exact test), Q value = 0.73

Table S3322.  Gene #301: 'RBM10 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
RBM10 MUTATED 1 2 0 5 6 0 1 1 2
RBM10 WILD-TYPE 39 60 28 75 63 48 42 27 72
'TRPM7 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00288 (Fisher's exact test), Q value = 0.048

Table S3323.  Gene #302: 'TRPM7 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
TRPM7 MUTATED 4 0 0 4
TRPM7 WILD-TYPE 42 58 64 39

Figure S1075.  Get High-res Image Gene #302: 'TRPM7 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'TRPM7 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.308 (Fisher's exact test), Q value = 0.64

Table S3324.  Gene #302: 'TRPM7 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
TRPM7 MUTATED 4 2 2
TRPM7 WILD-TYPE 47 81 75
'TRPM7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00349 (Fisher's exact test), Q value = 0.054

Table S3325.  Gene #302: 'TRPM7 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
TRPM7 MUTATED 18 4 5 3
TRPM7 WILD-TYPE 160 179 96 17

Figure S1076.  Get High-res Image Gene #302: 'TRPM7 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'TRPM7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.293 (Fisher's exact test), Q value = 0.62

Table S3326.  Gene #302: 'TRPM7 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
TRPM7 MUTATED 10 4 7
TRPM7 WILD-TYPE 77 76 93
'TRPM7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0308 (Fisher's exact test), Q value = 0.18

Table S3327.  Gene #302: 'TRPM7 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
TRPM7 MUTATED 2 7 14
TRPM7 WILD-TYPE 87 153 124

Figure S1077.  Get High-res Image Gene #302: 'TRPM7 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'TRPM7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.107 (Fisher's exact test), Q value = 0.36

Table S3328.  Gene #302: 'TRPM7 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
TRPM7 MUTATED 15 7 1
TRPM7 WILD-TYPE 167 126 71
'TRPM7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.189 (Fisher's exact test), Q value = 0.49

Table S3329.  Gene #302: 'TRPM7 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
TRPM7 MUTATED 4 6 10 10
TRPM7 WILD-TYPE 108 90 82 176
'TRPM7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00528 (Fisher's exact test), Q value = 0.066

Table S3330.  Gene #302: 'TRPM7 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
TRPM7 MUTATED 7 1 8 2 3 2 7
TRPM7 WILD-TYPE 53 49 41 38 60 123 92

Figure S1078.  Get High-res Image Gene #302: 'TRPM7 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'TRPM7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.365 (Fisher's exact test), Q value = 0.69

Table S3331.  Gene #302: 'TRPM7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
TRPM7 MUTATED 10 7 2 10
TRPM7 WILD-TYPE 120 71 66 186
'TRPM7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.116 (Fisher's exact test), Q value = 0.38

Table S3332.  Gene #302: 'TRPM7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
TRPM7 MUTATED 1 8 3 6 6 1 2 1 1
TRPM7 WILD-TYPE 39 54 25 74 63 47 41 27 73
'TRPM7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0557 (Fisher's exact test), Q value = 0.26

Table S3333.  Gene #302: 'TRPM7 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
TRPM7 MUTATED 2 4 0 4
TRPM7 WILD-TYPE 31 27 27 15
'TRPM7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0687 (Fisher's exact test), Q value = 0.28

Table S3334.  Gene #302: 'TRPM7 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
TRPM7 MUTATED 9 0 1 0
TRPM7 WILD-TYPE 45 10 23 22
'CAMSAP1L1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00364 (Fisher's exact test), Q value = 0.055

Table S3335.  Gene #303: 'CAMSAP1L1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
CAMSAP1L1 MUTATED 4 0 0 0
CAMSAP1L1 WILD-TYPE 42 58 64 43

Figure S1079.  Get High-res Image Gene #303: 'CAMSAP1L1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'CAMSAP1L1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00308 (Fisher's exact test), Q value = 0.05

Table S3336.  Gene #303: 'CAMSAP1L1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
CAMSAP1L1 MUTATED 4 0 0
CAMSAP1L1 WILD-TYPE 47 83 77

Figure S1080.  Get High-res Image Gene #303: 'CAMSAP1L1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'CAMSAP1L1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00176 (Fisher's exact test), Q value = 0.035

Table S3337.  Gene #303: 'CAMSAP1L1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
CAMSAP1L1 MUTATED 16 3 1 1
CAMSAP1L1 WILD-TYPE 162 180 100 19

Figure S1081.  Get High-res Image Gene #303: 'CAMSAP1L1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'CAMSAP1L1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0124 (Fisher's exact test), Q value = 0.11

Table S3338.  Gene #303: 'CAMSAP1L1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
CAMSAP1L1 MUTATED 11 1 8
CAMSAP1L1 WILD-TYPE 76 79 92

Figure S1082.  Get High-res Image Gene #303: 'CAMSAP1L1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'CAMSAP1L1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.408 (Fisher's exact test), Q value = 0.73

Table S3339.  Gene #303: 'CAMSAP1L1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
CAMSAP1L1 MUTATED 5 6 10
CAMSAP1L1 WILD-TYPE 84 154 128
'CAMSAP1L1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.422 (Fisher's exact test), Q value = 0.75

Table S3340.  Gene #303: 'CAMSAP1L1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
CAMSAP1L1 MUTATED 13 5 3
CAMSAP1L1 WILD-TYPE 169 128 69
'CAMSAP1L1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0159 (Fisher's exact test), Q value = 0.13

Table S3341.  Gene #303: 'CAMSAP1L1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
CAMSAP1L1 MUTATED 3 7 9 4
CAMSAP1L1 WILD-TYPE 109 89 83 182

Figure S1083.  Get High-res Image Gene #303: 'CAMSAP1L1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'CAMSAP1L1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00028 (Fisher's exact test), Q value = 0.01

Table S3342.  Gene #303: 'CAMSAP1L1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
CAMSAP1L1 MUTATED 2 5 8 2 2 0 4
CAMSAP1L1 WILD-TYPE 58 45 41 38 61 125 95

Figure S1084.  Get High-res Image Gene #303: 'CAMSAP1L1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CAMSAP1L1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0073 (Fisher's exact test), Q value = 0.079

Table S3343.  Gene #303: 'CAMSAP1L1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
CAMSAP1L1 MUTATED 14 2 1 6
CAMSAP1L1 WILD-TYPE 116 76 67 190

Figure S1085.  Get High-res Image Gene #303: 'CAMSAP1L1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'CAMSAP1L1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.621 (Fisher's exact test), Q value = 0.92

Table S3344.  Gene #303: 'CAMSAP1L1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
CAMSAP1L1 MUTATED 1 5 2 5 5 2 1 1 1
CAMSAP1L1 WILD-TYPE 39 57 26 75 64 46 42 27 73
'CAMSAP1L1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.23 (Fisher's exact test), Q value = 0.55

Table S3345.  Gene #303: 'CAMSAP1L1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
CAMSAP1L1 MUTATED 1 0 2 2
CAMSAP1L1 WILD-TYPE 32 31 25 17
'CAMSAP1L1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.892 (Fisher's exact test), Q value = 1

Table S3346.  Gene #303: 'CAMSAP1L1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
CAMSAP1L1 MUTATED 2 0 2 1
CAMSAP1L1 WILD-TYPE 52 10 22 21
'SLC33A1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00426 (Fisher's exact test), Q value = 0.06

Table S3347.  Gene #304: 'SLC33A1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
SLC33A1 MUTATED 7 1 0 2
SLC33A1 WILD-TYPE 171 182 101 18

Figure S1086.  Get High-res Image Gene #304: 'SLC33A1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'SLC33A1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.603 (Fisher's exact test), Q value = 0.91

Table S3348.  Gene #304: 'SLC33A1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
SLC33A1 MUTATED 3 1 4
SLC33A1 WILD-TYPE 84 79 96
'SLC33A1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.309 (Fisher's exact test), Q value = 0.64

Table S3349.  Gene #304: 'SLC33A1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
SLC33A1 MUTATED 0 4 4
SLC33A1 WILD-TYPE 89 156 134
'SLC33A1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0588 (Fisher's exact test), Q value = 0.26

Table S3350.  Gene #304: 'SLC33A1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
SLC33A1 MUTATED 2 6 0
SLC33A1 WILD-TYPE 180 127 72
'SLC33A1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.107 (Fisher's exact test), Q value = 0.36

Table S3351.  Gene #304: 'SLC33A1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
SLC33A1 MUTATED 1 5 2 2
SLC33A1 WILD-TYPE 111 91 90 184
'SLC33A1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.012 (Fisher's exact test), Q value = 0.11

Table S3352.  Gene #304: 'SLC33A1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
SLC33A1 MUTATED 2 4 0 2 1 1 0
SLC33A1 WILD-TYPE 58 46 49 38 62 124 99

Figure S1087.  Get High-res Image Gene #304: 'SLC33A1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'SLC33A1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.161 (Fisher's exact test), Q value = 0.45

Table S3353.  Gene #304: 'SLC33A1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
SLC33A1 MUTATED 6 1 0 3
SLC33A1 WILD-TYPE 124 77 68 193
'SLC33A1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.713 (Fisher's exact test), Q value = 0.98

Table S3354.  Gene #304: 'SLC33A1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
SLC33A1 MUTATED 3 1 0 2 1 1 1 0 1
SLC33A1 WILD-TYPE 37 61 28 78 68 47 42 28 73
'SLC33A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.252 (Fisher's exact test), Q value = 0.58

Table S3355.  Gene #304: 'SLC33A1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
SLC33A1 MUTATED 2 0 0 1
SLC33A1 WILD-TYPE 31 31 27 18
'SLC33A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.562 (Fisher's exact test), Q value = 0.87

Table S3356.  Gene #304: 'SLC33A1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
SLC33A1 MUTATED 3 0 0 0
SLC33A1 WILD-TYPE 51 10 24 22
'F2RL1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0574 (Fisher's exact test), Q value = 0.26

Table S3357.  Gene #305: 'F2RL1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
F2RL1 MUTATED 3 3 0 2
F2RL1 WILD-TYPE 175 180 101 18
'F2RL1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.714 (Fisher's exact test), Q value = 0.98

Table S3358.  Gene #305: 'F2RL1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
F2RL1 MUTATED 3 1 3
F2RL1 WILD-TYPE 84 79 97
'F2RL1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0247 (Fisher's exact test), Q value = 0.16

Table S3359.  Gene #305: 'F2RL1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
F2RL1 MUTATED 0 1 6
F2RL1 WILD-TYPE 89 159 132

Figure S1088.  Get High-res Image Gene #305: 'F2RL1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'F2RL1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.682 (Fisher's exact test), Q value = 0.96

Table S3360.  Gene #305: 'F2RL1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
F2RL1 MUTATED 4 3 0
F2RL1 WILD-TYPE 178 130 72
'F2RL1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.225 (Fisher's exact test), Q value = 0.54

Table S3361.  Gene #305: 'F2RL1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
F2RL1 MUTATED 3 3 1 1
F2RL1 WILD-TYPE 109 93 91 185
'F2RL1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00312 (Fisher's exact test), Q value = 0.05

Table S3362.  Gene #305: 'F2RL1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
F2RL1 MUTATED 4 2 1 1 0 0 0
F2RL1 WILD-TYPE 56 48 48 39 63 125 99

Figure S1089.  Get High-res Image Gene #305: 'F2RL1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'F2RL1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.913 (Fisher's exact test), Q value = 1

Table S3363.  Gene #305: 'F2RL1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
F2RL1 MUTATED 2 2 1 3
F2RL1 WILD-TYPE 128 76 67 193
'F2RL1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.676 (Fisher's exact test), Q value = 0.96

Table S3364.  Gene #305: 'F2RL1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
F2RL1 MUTATED 1 1 0 0 2 1 2 0 1
F2RL1 WILD-TYPE 39 61 28 80 67 47 41 28 73
'USP26 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00182 (Fisher's exact test), Q value = 0.035

Table S3365.  Gene #306: 'USP26 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
USP26 MUTATED 5 0 0 3
USP26 WILD-TYPE 41 58 64 40

Figure S1090.  Get High-res Image Gene #306: 'USP26 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'USP26 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0631 (Fisher's exact test), Q value = 0.27

Table S3366.  Gene #306: 'USP26 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
USP26 MUTATED 5 2 1
USP26 WILD-TYPE 46 81 76
'USP26 MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S3367.  Gene #306: 'USP26 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
USP26 MUTATED 23 1 0 0
USP26 WILD-TYPE 155 182 101 20

Figure S1091.  Get High-res Image Gene #306: 'USP26 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'USP26 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.079 (Fisher's exact test), Q value = 0.3

Table S3368.  Gene #306: 'USP26 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
USP26 MUTATED 7 1 8
USP26 WILD-TYPE 80 79 92
'USP26 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.274 (Fisher's exact test), Q value = 0.6

Table S3369.  Gene #306: 'USP26 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
USP26 MUTATED 2 9 10
USP26 WILD-TYPE 87 151 128
'USP26 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.956 (Fisher's exact test), Q value = 1

Table S3370.  Gene #306: 'USP26 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
USP26 MUTATED 10 8 3
USP26 WILD-TYPE 172 125 69
'USP26 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00402 (Fisher's exact test), Q value = 0.058

Table S3371.  Gene #306: 'USP26 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
USP26 MUTATED 0 9 6 9
USP26 WILD-TYPE 112 87 86 177

Figure S1092.  Get High-res Image Gene #306: 'USP26 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'USP26 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 2e-05 (Fisher's exact test), Q value = 0.0017

Table S3372.  Gene #306: 'USP26 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
USP26 MUTATED 1 3 10 0 1 1 8
USP26 WILD-TYPE 59 47 39 40 62 124 91

Figure S1093.  Get High-res Image Gene #306: 'USP26 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'USP26 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.15 (Fisher's exact test), Q value = 0.43

Table S3373.  Gene #306: 'USP26 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
USP26 MUTATED 8 5 0 10
USP26 WILD-TYPE 122 73 68 186
'USP26 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.106 (Fisher's exact test), Q value = 0.36

Table S3374.  Gene #306: 'USP26 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
USP26 MUTATED 2 5 2 2 8 0 1 1 2
USP26 WILD-TYPE 38 57 26 78 61 48 42 27 72
'USP26 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.138 (Fisher's exact test), Q value = 0.41

Table S3375.  Gene #306: 'USP26 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
USP26 MUTATED 1 0 0 2
USP26 WILD-TYPE 32 31 27 17
'USP26 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S3376.  Gene #306: 'USP26 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
USP26 MUTATED 2 0 1 0
USP26 WILD-TYPE 52 10 23 22
'WEE1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00349 (Fisher's exact test), Q value = 0.054

Table S3377.  Gene #307: 'WEE1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
WEE1 MUTATED 10 0 2 0
WEE1 WILD-TYPE 168 183 99 20

Figure S1094.  Get High-res Image Gene #307: 'WEE1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'WEE1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.371 (Fisher's exact test), Q value = 0.7

Table S3378.  Gene #307: 'WEE1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
WEE1 MUTATED 4 1 5
WEE1 WILD-TYPE 83 79 95
'WEE1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.301 (Fisher's exact test), Q value = 0.63

Table S3379.  Gene #307: 'WEE1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
WEE1 MUTATED 2 7 2
WEE1 WILD-TYPE 87 153 136
'WEE1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.147 (Fisher's exact test), Q value = 0.43

Table S3380.  Gene #307: 'WEE1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
WEE1 MUTATED 3 7 1
WEE1 WILD-TYPE 179 126 71
'WEE1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0912 (Fisher's exact test), Q value = 0.33

Table S3381.  Gene #307: 'WEE1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
WEE1 MUTATED 1 6 2 3
WEE1 WILD-TYPE 111 90 90 183
'WEE1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0171 (Fisher's exact test), Q value = 0.13

Table S3382.  Gene #307: 'WEE1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
WEE1 MUTATED 1 3 4 0 1 0 3
WEE1 WILD-TYPE 59 47 45 40 62 125 96

Figure S1095.  Get High-res Image Gene #307: 'WEE1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'WEE1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.104 (Fisher's exact test), Q value = 0.36

Table S3383.  Gene #307: 'WEE1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
WEE1 MUTATED 7 0 1 4
WEE1 WILD-TYPE 123 78 67 192
'WEE1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.788 (Fisher's exact test), Q value = 1

Table S3384.  Gene #307: 'WEE1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
WEE1 MUTATED 0 3 1 2 3 0 1 0 2
WEE1 WILD-TYPE 40 59 27 78 66 48 42 28 72
'ERBB2IP MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00092 (Fisher's exact test), Q value = 0.023

Table S3385.  Gene #308: 'ERBB2IP MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ERBB2IP MUTATED 1 0 0 5
ERBB2IP WILD-TYPE 45 58 64 38

Figure S1096.  Get High-res Image Gene #308: 'ERBB2IP MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'ERBB2IP MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.242 (Fisher's exact test), Q value = 0.57

Table S3386.  Gene #308: 'ERBB2IP MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ERBB2IP MUTATED 3 1 2
ERBB2IP WILD-TYPE 48 82 75
'ERBB2IP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00331 (Fisher's exact test), Q value = 0.052

Table S3387.  Gene #308: 'ERBB2IP MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ERBB2IP MUTATED 14 4 0 0
ERBB2IP WILD-TYPE 164 179 101 20

Figure S1097.  Get High-res Image Gene #308: 'ERBB2IP MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ERBB2IP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0404 (Fisher's exact test), Q value = 0.21

Table S3388.  Gene #308: 'ERBB2IP MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ERBB2IP MUTATED 6 0 6
ERBB2IP WILD-TYPE 81 80 94

Figure S1098.  Get High-res Image Gene #308: 'ERBB2IP MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'ERBB2IP MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.248 (Fisher's exact test), Q value = 0.57

Table S3389.  Gene #308: 'ERBB2IP MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ERBB2IP MUTATED 2 5 9
ERBB2IP WILD-TYPE 87 155 129
'ERBB2IP MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.553 (Fisher's exact test), Q value = 0.87

Table S3390.  Gene #308: 'ERBB2IP MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ERBB2IP MUTATED 10 4 2
ERBB2IP WILD-TYPE 172 129 70
'ERBB2IP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00168 (Fisher's exact test), Q value = 0.034

Table S3391.  Gene #308: 'ERBB2IP MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ERBB2IP MUTATED 0 2 9 7
ERBB2IP WILD-TYPE 112 94 83 179

Figure S1099.  Get High-res Image Gene #308: 'ERBB2IP MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'ERBB2IP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00666 (Fisher's exact test), Q value = 0.075

Table S3392.  Gene #308: 'ERBB2IP MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ERBB2IP MUTATED 3 1 5 0 3 0 6
ERBB2IP WILD-TYPE 57 49 44 40 60 125 93

Figure S1100.  Get High-res Image Gene #308: 'ERBB2IP MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ERBB2IP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.264 (Fisher's exact test), Q value = 0.59

Table S3393.  Gene #308: 'ERBB2IP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ERBB2IP MUTATED 7 3 0 7
ERBB2IP WILD-TYPE 123 75 68 189
'ERBB2IP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.253 (Fisher's exact test), Q value = 0.58

Table S3394.  Gene #308: 'ERBB2IP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ERBB2IP MUTATED 1 5 2 2 4 0 2 0 1
ERBB2IP WILD-TYPE 39 57 26 78 65 48 41 28 73
'ERBB2IP MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.39 (Fisher's exact test), Q value = 0.72

Table S3395.  Gene #308: 'ERBB2IP MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
ERBB2IP MUTATED 2 1 0 2
ERBB2IP WILD-TYPE 31 30 27 17
'ERBB2IP MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.757 (Fisher's exact test), Q value = 1

Table S3396.  Gene #308: 'ERBB2IP MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
ERBB2IP MUTATED 4 0 1 0
ERBB2IP WILD-TYPE 50 10 23 22
'B4GALNT4 MUTATION STATUS' versus 'CN_CNMF'

P value = 2e-04 (Fisher's exact test), Q value = 0.0083

Table S3397.  Gene #309: 'B4GALNT4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
B4GALNT4 MUTATED 11 0 0 0
B4GALNT4 WILD-TYPE 167 183 101 20

Figure S1101.  Get High-res Image Gene #309: 'B4GALNT4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'B4GALNT4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0733 (Fisher's exact test), Q value = 0.29

Table S3398.  Gene #309: 'B4GALNT4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
B4GALNT4 MUTATED 5 0 5
B4GALNT4 WILD-TYPE 82 80 95
'B4GALNT4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.115 (Fisher's exact test), Q value = 0.38

Table S3399.  Gene #309: 'B4GALNT4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
B4GALNT4 MUTATED 0 4 6
B4GALNT4 WILD-TYPE 89 156 132
'B4GALNT4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.763 (Fisher's exact test), Q value = 1

Table S3400.  Gene #309: 'B4GALNT4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
B4GALNT4 MUTATED 6 3 1
B4GALNT4 WILD-TYPE 176 130 71
'B4GALNT4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0135 (Fisher's exact test), Q value = 0.11

Table S3401.  Gene #309: 'B4GALNT4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
B4GALNT4 MUTATED 0 4 5 2
B4GALNT4 WILD-TYPE 112 92 87 184

Figure S1102.  Get High-res Image Gene #309: 'B4GALNT4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'B4GALNT4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S3402.  Gene #309: 'B4GALNT4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
B4GALNT4 MUTATED 0 0 9 0 0 0 2
B4GALNT4 WILD-TYPE 60 50 40 40 63 125 97

Figure S1103.  Get High-res Image Gene #309: 'B4GALNT4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'B4GALNT4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.427 (Fisher's exact test), Q value = 0.75

Table S3403.  Gene #309: 'B4GALNT4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
B4GALNT4 MUTATED 5 2 0 4
B4GALNT4 WILD-TYPE 125 76 68 192
'B4GALNT4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0504 (Fisher's exact test), Q value = 0.24

Table S3404.  Gene #309: 'B4GALNT4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
B4GALNT4 MUTATED 0 3 0 1 6 0 0 0 1
B4GALNT4 WILD-TYPE 40 59 28 79 63 48 43 28 73
'B4GALNT4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.134 (Fisher's exact test), Q value = 0.41

Table S3405.  Gene #309: 'B4GALNT4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
B4GALNT4 MUTATED 1 0 0 2
B4GALNT4 WILD-TYPE 32 31 27 17
'B4GALNT4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S3406.  Gene #309: 'B4GALNT4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
B4GALNT4 MUTATED 2 0 1 0
B4GALNT4 WILD-TYPE 52 10 23 22
'NSUN6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0129 (Fisher's exact test), Q value = 0.11

Table S3407.  Gene #310: 'NSUN6 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
NSUN6 MUTATED 8 1 0 1
NSUN6 WILD-TYPE 170 182 101 19

Figure S1104.  Get High-res Image Gene #310: 'NSUN6 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'NSUN6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.604 (Fisher's exact test), Q value = 0.91

Table S3408.  Gene #310: 'NSUN6 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
NSUN6 MUTATED 3 1 4
NSUN6 WILD-TYPE 84 79 96
'NSUN6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.507 (Fisher's exact test), Q value = 0.83

Table S3409.  Gene #310: 'NSUN6 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
NSUN6 MUTATED 1 6 3
NSUN6 WILD-TYPE 88 154 135
'NSUN6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.916 (Fisher's exact test), Q value = 1

Table S3410.  Gene #310: 'NSUN6 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
NSUN6 MUTATED 5 4 1
NSUN6 WILD-TYPE 177 129 71
'NSUN6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.411 (Fisher's exact test), Q value = 0.74

Table S3411.  Gene #310: 'NSUN6 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
NSUN6 MUTATED 1 2 4 3
NSUN6 WILD-TYPE 111 94 88 183
'NSUN6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00385 (Fisher's exact test), Q value = 0.056

Table S3412.  Gene #310: 'NSUN6 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
NSUN6 MUTATED 2 0 5 0 1 0 2
NSUN6 WILD-TYPE 58 50 44 40 62 125 97

Figure S1105.  Get High-res Image Gene #310: 'NSUN6 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'NSUN6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3413.  Gene #310: 'NSUN6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
NSUN6 MUTATED 3 2 1 4
NSUN6 WILD-TYPE 127 76 67 192
'NSUN6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.139 (Fisher's exact test), Q value = 0.41

Table S3414.  Gene #310: 'NSUN6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
NSUN6 MUTATED 0 4 1 0 3 0 1 0 1
NSUN6 WILD-TYPE 40 58 27 80 66 48 42 28 73
'NSUN6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.873 (Fisher's exact test), Q value = 1

Table S3415.  Gene #310: 'NSUN6 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
NSUN6 MUTATED 1 1 0 1
NSUN6 WILD-TYPE 32 30 27 18
'NSUN6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.563 (Fisher's exact test), Q value = 0.87

Table S3416.  Gene #310: 'NSUN6 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
NSUN6 MUTATED 3 0 0 0
NSUN6 WILD-TYPE 51 10 24 22
'KDM5B MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0114 (Fisher's exact test), Q value = 0.1

Table S3417.  Gene #311: 'KDM5B MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
KDM5B MUTATED 6 2 0 2
KDM5B WILD-TYPE 40 56 64 41

Figure S1106.  Get High-res Image Gene #311: 'KDM5B MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'KDM5B MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.186 (Fisher's exact test), Q value = 0.49

Table S3418.  Gene #311: 'KDM5B MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
KDM5B MUTATED 5 2 3
KDM5B WILD-TYPE 46 81 74
'KDM5B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.072 (Fisher's exact test), Q value = 0.29

Table S3419.  Gene #311: 'KDM5B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
KDM5B MUTATED 17 8 3 0
KDM5B WILD-TYPE 161 175 98 20
'KDM5B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.417 (Fisher's exact test), Q value = 0.75

Table S3420.  Gene #311: 'KDM5B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
KDM5B MUTATED 5 4 10
KDM5B WILD-TYPE 82 76 90
'KDM5B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3421.  Gene #311: 'KDM5B MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
KDM5B MUTATED 5 9 7
KDM5B WILD-TYPE 84 151 131
'KDM5B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.44 (Fisher's exact test), Q value = 0.77

Table S3422.  Gene #311: 'KDM5B MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
KDM5B MUTATED 8 7 6
KDM5B WILD-TYPE 174 126 66
'KDM5B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3423.  Gene #311: 'KDM5B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
KDM5B MUTATED 6 6 5 11
KDM5B WILD-TYPE 106 90 87 175
'KDM5B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.203 (Fisher's exact test), Q value = 0.51

Table S3424.  Gene #311: 'KDM5B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
KDM5B MUTATED 4 3 6 1 3 3 8
KDM5B WILD-TYPE 56 47 43 39 60 122 91
'KDM5B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.6 (Fisher's exact test), Q value = 0.9

Table S3425.  Gene #311: 'KDM5B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
KDM5B MUTATED 10 3 5 10
KDM5B WILD-TYPE 120 75 63 186
'KDM5B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.233 (Fisher's exact test), Q value = 0.55

Table S3426.  Gene #311: 'KDM5B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
KDM5B MUTATED 1 2 3 5 7 1 5 2 2
KDM5B WILD-TYPE 39 60 25 75 62 47 38 26 72
'KDM5B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.142 (Fisher's exact test), Q value = 0.42

Table S3427.  Gene #311: 'KDM5B MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
KDM5B MUTATED 2 0 2 3
KDM5B WILD-TYPE 31 31 25 16
'KDM5B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.732 (Fisher's exact test), Q value = 1

Table S3428.  Gene #311: 'KDM5B MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
KDM5B MUTATED 3 1 2 1
KDM5B WILD-TYPE 51 9 22 21
'KRAS MUTATION STATUS' versus 'MRNA_CNMF'

P value = 2e-05 (Fisher's exact test), Q value = 0.0017

Table S3429.  Gene #312: 'KRAS MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
KRAS MUTATED 14 15 25 31
KRAS WILD-TYPE 32 43 39 12

Figure S1107.  Get High-res Image Gene #312: 'KRAS MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'KRAS MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 3e-05 (Fisher's exact test), Q value = 0.0022

Table S3430.  Gene #312: 'KRAS MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
KRAS MUTATED 20 19 46
KRAS WILD-TYPE 31 64 31

Figure S1108.  Get High-res Image Gene #312: 'KRAS MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'KRAS MUTATION STATUS' versus 'CN_CNMF'

P value = 0.192 (Fisher's exact test), Q value = 0.49

Table S3431.  Gene #312: 'KRAS MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
KRAS MUTATED 94 76 47 10
KRAS WILD-TYPE 84 107 54 10
'KRAS MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00144 (Fisher's exact test), Q value = 0.031

Table S3432.  Gene #312: 'KRAS MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
KRAS MUTATED 46 28 62
KRAS WILD-TYPE 41 52 38

Figure S1109.  Get High-res Image Gene #312: 'KRAS MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'KRAS MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.519 (Fisher's exact test), Q value = 0.84

Table S3433.  Gene #312: 'KRAS MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
KRAS MUTATED 40 83 65
KRAS WILD-TYPE 49 77 73
'KRAS MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.389 (Fisher's exact test), Q value = 0.72

Table S3434.  Gene #312: 'KRAS MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
KRAS MUTATED 84 71 33
KRAS WILD-TYPE 98 62 39
'KRAS MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 3e-05 (Fisher's exact test), Q value = 0.0022

Table S3435.  Gene #312: 'KRAS MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
KRAS MUTATED 46 64 46 72
KRAS WILD-TYPE 66 32 46 114

Figure S1110.  Get High-res Image Gene #312: 'KRAS MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'KRAS MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 7e-05 (Fisher's exact test), Q value = 0.0041

Table S3436.  Gene #312: 'KRAS MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
KRAS MUTATED 35 32 25 21 25 36 54
KRAS WILD-TYPE 25 18 24 19 38 89 45

Figure S1111.  Get High-res Image Gene #312: 'KRAS MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'KRAS MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.172 (Fisher's exact test), Q value = 0.47

Table S3437.  Gene #312: 'KRAS MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
KRAS MUTATED 66 41 34 80
KRAS WILD-TYPE 64 37 34 116
'KRAS MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.582 (Fisher's exact test), Q value = 0.89

Table S3438.  Gene #312: 'KRAS MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
KRAS MUTATED 23 29 15 34 31 19 25 13 32
KRAS WILD-TYPE 17 33 13 46 38 29 18 15 42
'KRAS MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.442 (Fisher's exact test), Q value = 0.77

Table S3439.  Gene #312: 'KRAS MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
KRAS MUTATED 16 11 15 10
KRAS WILD-TYPE 17 20 12 9
'KRAS MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.7 (Fisher's exact test), Q value = 0.97

Table S3440.  Gene #312: 'KRAS MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
KRAS MUTATED 24 4 14 10
KRAS WILD-TYPE 30 6 10 12
'GATA3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.628 (Fisher's exact test), Q value = 0.92

Table S3441.  Gene #313: 'GATA3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
GATA3 MUTATED 1 1 0 1
GATA3 WILD-TYPE 45 57 64 42
'GATA3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.252 (Fisher's exact test), Q value = 0.58

Table S3442.  Gene #313: 'GATA3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
GATA3 MUTATED 2 1 0
GATA3 WILD-TYPE 49 82 77
'GATA3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.02 (Fisher's exact test), Q value = 0.14

Table S3443.  Gene #313: 'GATA3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
GATA3 MUTATED 10 2 2 2
GATA3 WILD-TYPE 168 181 99 18

Figure S1112.  Get High-res Image Gene #313: 'GATA3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'GATA3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.213 (Fisher's exact test), Q value = 0.52

Table S3444.  Gene #313: 'GATA3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
GATA3 MUTATED 2 3 8
GATA3 WILD-TYPE 85 77 92
'GATA3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.208 (Fisher's exact test), Q value = 0.52

Table S3445.  Gene #313: 'GATA3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
GATA3 MUTATED 2 8 2
GATA3 WILD-TYPE 87 152 136
'GATA3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.498 (Fisher's exact test), Q value = 0.82

Table S3446.  Gene #313: 'GATA3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
GATA3 MUTATED 4 6 2
GATA3 WILD-TYPE 178 127 70
'GATA3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.186 (Fisher's exact test), Q value = 0.49

Table S3447.  Gene #313: 'GATA3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
GATA3 MUTATED 3 6 4 3
GATA3 WILD-TYPE 109 90 88 183
'GATA3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00401 (Fisher's exact test), Q value = 0.058

Table S3448.  Gene #313: 'GATA3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
GATA3 MUTATED 2 4 6 0 1 1 2
GATA3 WILD-TYPE 58 46 43 40 62 124 97

Figure S1113.  Get High-res Image Gene #313: 'GATA3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'GATA3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.479 (Fisher's exact test), Q value = 0.81

Table S3449.  Gene #313: 'GATA3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
GATA3 MUTATED 6 4 1 5
GATA3 WILD-TYPE 124 74 67 191
'GATA3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0522 (Fisher's exact test), Q value = 0.25

Table S3450.  Gene #313: 'GATA3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
GATA3 MUTATED 4 2 3 1 4 1 0 0 1
GATA3 WILD-TYPE 36 60 25 79 65 47 43 28 73
'GATA3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.256 (Fisher's exact test), Q value = 0.58

Table S3451.  Gene #313: 'GATA3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
GATA3 MUTATED 2 0 0 1
GATA3 WILD-TYPE 31 31 27 18
'GATA3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.562 (Fisher's exact test), Q value = 0.87

Table S3452.  Gene #313: 'GATA3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
GATA3 MUTATED 3 0 0 0
GATA3 WILD-TYPE 51 10 24 22
'OVCH1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0262 (Fisher's exact test), Q value = 0.16

Table S3453.  Gene #314: 'OVCH1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
OVCH1 MUTATED 3 1 0 4
OVCH1 WILD-TYPE 43 57 64 39

Figure S1114.  Get High-res Image Gene #314: 'OVCH1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'OVCH1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.528 (Fisher's exact test), Q value = 0.85

Table S3454.  Gene #314: 'OVCH1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
OVCH1 MUTATED 3 2 3
OVCH1 WILD-TYPE 48 81 74
'OVCH1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0206 (Fisher's exact test), Q value = 0.14

Table S3455.  Gene #314: 'OVCH1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
OVCH1 MUTATED 17 6 2 1
OVCH1 WILD-TYPE 161 177 99 19

Figure S1115.  Get High-res Image Gene #314: 'OVCH1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'OVCH1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.481 (Fisher's exact test), Q value = 0.81

Table S3456.  Gene #314: 'OVCH1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
OVCH1 MUTATED 4 5 9
OVCH1 WILD-TYPE 83 75 91
'OVCH1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.424 (Fisher's exact test), Q value = 0.75

Table S3457.  Gene #314: 'OVCH1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
OVCH1 MUTATED 3 7 10
OVCH1 WILD-TYPE 86 153 128
'OVCH1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.32 (Fisher's exact test), Q value = 0.65

Table S3458.  Gene #314: 'OVCH1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
OVCH1 MUTATED 8 10 2
OVCH1 WILD-TYPE 174 123 70
'OVCH1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.558 (Fisher's exact test), Q value = 0.87

Table S3459.  Gene #314: 'OVCH1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
OVCH1 MUTATED 7 7 5 7
OVCH1 WILD-TYPE 105 89 87 179
'OVCH1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0306 (Fisher's exact test), Q value = 0.18

Table S3460.  Gene #314: 'OVCH1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
OVCH1 MUTATED 6 1 6 1 5 2 5
OVCH1 WILD-TYPE 54 49 43 39 58 123 94

Figure S1116.  Get High-res Image Gene #314: 'OVCH1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'OVCH1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.906 (Fisher's exact test), Q value = 1

Table S3461.  Gene #314: 'OVCH1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
OVCH1 MUTATED 8 4 4 9
OVCH1 WILD-TYPE 122 74 64 187
'OVCH1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0253 (Fisher's exact test), Q value = 0.16

Table S3462.  Gene #314: 'OVCH1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
OVCH1 MUTATED 4 3 3 4 8 1 2 0 0
OVCH1 WILD-TYPE 36 59 25 76 61 47 41 28 74

Figure S1117.  Get High-res Image Gene #314: 'OVCH1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'OVCH1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3463.  Gene #314: 'OVCH1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
OVCH1 MUTATED 2 1 1 1
OVCH1 WILD-TYPE 31 30 26 18
'OVCH1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.519 (Fisher's exact test), Q value = 0.84

Table S3464.  Gene #314: 'OVCH1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
OVCH1 MUTATED 3 1 1 0
OVCH1 WILD-TYPE 51 9 23 22
'MUC17 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0132 (Fisher's exact test), Q value = 0.11

Table S3465.  Gene #315: 'MUC17 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
MUC17 MUTATED 6 3 1 7
MUC17 WILD-TYPE 40 55 63 36

Figure S1118.  Get High-res Image Gene #315: 'MUC17 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'MUC17 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.194 (Fisher's exact test), Q value = 0.5

Table S3466.  Gene #315: 'MUC17 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
MUC17 MUTATED 7 4 6
MUC17 WILD-TYPE 44 79 71
'MUC17 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00071 (Fisher's exact test), Q value = 0.02

Table S3467.  Gene #315: 'MUC17 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
MUC17 MUTATED 31 8 12 2
MUC17 WILD-TYPE 147 175 89 18

Figure S1119.  Get High-res Image Gene #315: 'MUC17 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'MUC17 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0529 (Fisher's exact test), Q value = 0.25

Table S3468.  Gene #315: 'MUC17 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
MUC17 MUTATED 10 7 21
MUC17 WILD-TYPE 77 73 79
'MUC17 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0504 (Fisher's exact test), Q value = 0.24

Table S3469.  Gene #315: 'MUC17 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
MUC17 MUTATED 4 19 20
MUC17 WILD-TYPE 85 141 118
'MUC17 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.622 (Fisher's exact test), Q value = 0.92

Table S3470.  Gene #315: 'MUC17 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
MUC17 MUTATED 18 15 10
MUC17 WILD-TYPE 164 118 62
'MUC17 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.45 (Fisher's exact test), Q value = 0.78

Table S3471.  Gene #315: 'MUC17 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
MUC17 MUTATED 10 15 11 19
MUC17 WILD-TYPE 102 81 81 167
'MUC17 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00021 (Fisher's exact test), Q value = 0.0086

Table S3472.  Gene #315: 'MUC17 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
MUC17 MUTATED 8 5 14 7 3 5 13
MUC17 WILD-TYPE 52 45 35 33 60 120 86

Figure S1120.  Get High-res Image Gene #315: 'MUC17 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'MUC17 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.316 (Fisher's exact test), Q value = 0.64

Table S3473.  Gene #315: 'MUC17 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
MUC17 MUTATED 20 9 5 19
MUC17 WILD-TYPE 110 69 63 177
'MUC17 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0276 (Fisher's exact test), Q value = 0.17

Table S3474.  Gene #315: 'MUC17 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
MUC17 MUTATED 5 8 5 4 15 6 4 0 6
MUC17 WILD-TYPE 35 54 23 76 54 42 39 28 68

Figure S1121.  Get High-res Image Gene #315: 'MUC17 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'MUC17 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.583 (Fisher's exact test), Q value = 0.89

Table S3475.  Gene #315: 'MUC17 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
MUC17 MUTATED 3 3 1 3
MUC17 WILD-TYPE 30 28 26 16
'MUC17 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.336 (Fisher's exact test), Q value = 0.66

Table S3476.  Gene #315: 'MUC17 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
MUC17 MUTATED 6 1 3 0
MUC17 WILD-TYPE 48 9 21 22
'GTF2B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0799 (Fisher's exact test), Q value = 0.3

Table S3477.  Gene #316: 'GTF2B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
GTF2B MUTATED 8 1 3 0
GTF2B WILD-TYPE 170 182 98 20
'GTF2B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.508 (Fisher's exact test), Q value = 0.83

Table S3478.  Gene #316: 'GTF2B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
GTF2B MUTATED 3 2 6
GTF2B WILD-TYPE 84 78 94
'GTF2B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3479.  Gene #316: 'GTF2B MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
GTF2B MUTATED 2 4 3
GTF2B WILD-TYPE 87 156 135
'GTF2B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.91 (Fisher's exact test), Q value = 1

Table S3480.  Gene #316: 'GTF2B MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
GTF2B MUTATED 4 3 2
GTF2B WILD-TYPE 178 130 70
'GTF2B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.355 (Fisher's exact test), Q value = 0.68

Table S3481.  Gene #316: 'GTF2B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
GTF2B MUTATED 2 5 2 3
GTF2B WILD-TYPE 110 91 90 183
'GTF2B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.131 (Fisher's exact test), Q value = 0.4

Table S3482.  Gene #316: 'GTF2B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
GTF2B MUTATED 0 3 3 1 2 1 2
GTF2B WILD-TYPE 60 47 46 39 61 124 97
'GTF2B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.223 (Fisher's exact test), Q value = 0.54

Table S3483.  Gene #316: 'GTF2B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
GTF2B MUTATED 6 0 1 5
GTF2B WILD-TYPE 124 78 67 191
'GTF2B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.783 (Fisher's exact test), Q value = 1

Table S3484.  Gene #316: 'GTF2B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
GTF2B MUTATED 2 1 1 1 2 0 1 1 3
GTF2B WILD-TYPE 38 61 27 79 67 48 42 27 71
'RUNX1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0734 (Fisher's exact test), Q value = 0.29

Table S3485.  Gene #317: 'RUNX1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
RUNX1 MUTATED 2 0 0 2
RUNX1 WILD-TYPE 44 58 64 41
'RUNX1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.177 (Fisher's exact test), Q value = 0.48

Table S3486.  Gene #317: 'RUNX1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
RUNX1 MUTATED 2 0 2
RUNX1 WILD-TYPE 49 83 75
'RUNX1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.334 (Fisher's exact test), Q value = 0.66

Table S3487.  Gene #317: 'RUNX1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
RUNX1 MUTATED 18 10 10 1
RUNX1 WILD-TYPE 160 173 91 19
'RUNX1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.246 (Fisher's exact test), Q value = 0.57

Table S3488.  Gene #317: 'RUNX1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
RUNX1 MUTATED 10 8 18
RUNX1 WILD-TYPE 77 72 82
'RUNX1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.184 (Fisher's exact test), Q value = 0.48

Table S3489.  Gene #317: 'RUNX1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
RUNX1 MUTATED 5 12 17
RUNX1 WILD-TYPE 84 148 121
'RUNX1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.114 (Fisher's exact test), Q value = 0.37

Table S3490.  Gene #317: 'RUNX1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
RUNX1 MUTATED 18 14 2
RUNX1 WILD-TYPE 164 119 70
'RUNX1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 4e-05 (Fisher's exact test), Q value = 0.0027

Table S3491.  Gene #317: 'RUNX1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
RUNX1 MUTATED 10 19 7 5
RUNX1 WILD-TYPE 102 77 85 181

Figure S1122.  Get High-res Image Gene #317: 'RUNX1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'RUNX1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 4e-05 (Fisher's exact test), Q value = 0.0027

Table S3492.  Gene #317: 'RUNX1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
RUNX1 MUTATED 6 10 10 5 4 2 4
RUNX1 WILD-TYPE 54 40 39 35 59 123 95

Figure S1123.  Get High-res Image Gene #317: 'RUNX1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'RUNX1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 2e-05 (Fisher's exact test), Q value = 0.0017

Table S3493.  Gene #317: 'RUNX1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
RUNX1 MUTATED 25 6 5 5
RUNX1 WILD-TYPE 105 72 63 191

Figure S1124.  Get High-res Image Gene #317: 'RUNX1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'RUNX1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.16 (Fisher's exact test), Q value = 0.45

Table S3494.  Gene #317: 'RUNX1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
RUNX1 MUTATED 6 6 6 5 6 2 5 2 3
RUNX1 WILD-TYPE 34 56 22 75 63 46 38 26 71
'RUNX1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.462 (Fisher's exact test), Q value = 0.79

Table S3495.  Gene #317: 'RUNX1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
RUNX1 MUTATED 3 2 3 4
RUNX1 WILD-TYPE 30 29 24 15
'RUNX1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.85 (Fisher's exact test), Q value = 1

Table S3496.  Gene #317: 'RUNX1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
RUNX1 MUTATED 6 0 3 3
RUNX1 WILD-TYPE 48 10 21 19
'C9ORF84 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00846 (Fisher's exact test), Q value = 0.086

Table S3497.  Gene #318: 'C9ORF84 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
C9ORF84 MUTATED 3 0 0 3
C9ORF84 WILD-TYPE 43 58 64 40

Figure S1125.  Get High-res Image Gene #318: 'C9ORF84 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'C9ORF84 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.341 (Fisher's exact test), Q value = 0.67

Table S3498.  Gene #318: 'C9ORF84 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
C9ORF84 MUTATED 3 2 1
C9ORF84 WILD-TYPE 48 81 76
'C9ORF84 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00065 (Fisher's exact test), Q value = 0.018

Table S3499.  Gene #318: 'C9ORF84 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
C9ORF84 MUTATED 17 2 2 0
C9ORF84 WILD-TYPE 161 181 99 20

Figure S1126.  Get High-res Image Gene #318: 'C9ORF84 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'C9ORF84 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.476 (Fisher's exact test), Q value = 0.81

Table S3500.  Gene #318: 'C9ORF84 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
C9ORF84 MUTATED 7 3 5
C9ORF84 WILD-TYPE 80 77 95
'C9ORF84 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.282 (Fisher's exact test), Q value = 0.61

Table S3501.  Gene #318: 'C9ORF84 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
C9ORF84 MUTATED 6 5 9
C9ORF84 WILD-TYPE 83 155 129
'C9ORF84 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.625 (Fisher's exact test), Q value = 0.92

Table S3502.  Gene #318: 'C9ORF84 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
C9ORF84 MUTATED 11 7 2
C9ORF84 WILD-TYPE 171 126 70
'C9ORF84 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.133 (Fisher's exact test), Q value = 0.41

Table S3503.  Gene #318: 'C9ORF84 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
C9ORF84 MUTATED 2 6 7 6
C9ORF84 WILD-TYPE 110 90 85 180
'C9ORF84 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0654 (Fisher's exact test), Q value = 0.28

Table S3504.  Gene #318: 'C9ORF84 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
C9ORF84 MUTATED 2 2 5 1 5 1 5
C9ORF84 WILD-TYPE 58 48 44 39 58 124 94
'C9ORF84 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0678 (Fisher's exact test), Q value = 0.28

Table S3505.  Gene #318: 'C9ORF84 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
C9ORF84 MUTATED 8 6 0 7
C9ORF84 WILD-TYPE 122 72 68 189
'C9ORF84 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00131 (Fisher's exact test), Q value = 0.029

Table S3506.  Gene #318: 'C9ORF84 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
C9ORF84 MUTATED 4 7 2 2 6 0 0 0 0
C9ORF84 WILD-TYPE 36 55 26 78 63 48 43 28 74

Figure S1127.  Get High-res Image Gene #318: 'C9ORF84 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'C9ORF84 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.106 (Fisher's exact test), Q value = 0.36

Table S3507.  Gene #318: 'C9ORF84 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
C9ORF84 MUTATED 1 2 0 3
C9ORF84 WILD-TYPE 32 29 27 16
'C9ORF84 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.567 (Fisher's exact test), Q value = 0.87

Table S3508.  Gene #318: 'C9ORF84 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
C9ORF84 MUTATED 5 0 1 0
C9ORF84 WILD-TYPE 49 10 23 22
'NR4A2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.112 (Fisher's exact test), Q value = 0.37

Table S3509.  Gene #319: 'NR4A2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
NR4A2 MUTATED 2 0 1 3
NR4A2 WILD-TYPE 44 58 63 40
'NR4A2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0154 (Fisher's exact test), Q value = 0.12

Table S3510.  Gene #319: 'NR4A2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
NR4A2 MUTATED 4 0 2
NR4A2 WILD-TYPE 47 83 75

Figure S1128.  Get High-res Image Gene #319: 'NR4A2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'NR4A2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.162 (Fisher's exact test), Q value = 0.45

Table S3511.  Gene #319: 'NR4A2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
NR4A2 MUTATED 9 3 1 0
NR4A2 WILD-TYPE 169 180 100 20
'NR4A2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3512.  Gene #319: 'NR4A2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
NR4A2 MUTATED 2 2 3
NR4A2 WILD-TYPE 85 78 97
'NR4A2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.542 (Fisher's exact test), Q value = 0.86

Table S3513.  Gene #319: 'NR4A2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
NR4A2 MUTATED 1 6 4
NR4A2 WILD-TYPE 88 154 134
'NR4A2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.428 (Fisher's exact test), Q value = 0.76

Table S3514.  Gene #319: 'NR4A2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
NR4A2 MUTATED 4 6 1
NR4A2 WILD-TYPE 178 127 71
'NR4A2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.573 (Fisher's exact test), Q value = 0.88

Table S3515.  Gene #319: 'NR4A2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
NR4A2 MUTATED 2 4 1 6
NR4A2 WILD-TYPE 110 92 91 180
'NR4A2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.426 (Fisher's exact test), Q value = 0.75

Table S3516.  Gene #319: 'NR4A2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
NR4A2 MUTATED 2 1 3 1 1 1 4
NR4A2 WILD-TYPE 58 49 46 39 62 124 95
'NR4A2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.871 (Fisher's exact test), Q value = 1

Table S3517.  Gene #319: 'NR4A2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
NR4A2 MUTATED 4 1 1 5
NR4A2 WILD-TYPE 126 77 67 191
'NR4A2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.421 (Fisher's exact test), Q value = 0.75

Table S3518.  Gene #319: 'NR4A2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
NR4A2 MUTATED 1 2 0 1 5 1 0 0 1
NR4A2 WILD-TYPE 39 60 28 79 64 47 43 28 73
'NR4A2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.268 (Fisher's exact test), Q value = 0.59

Table S3519.  Gene #319: 'NR4A2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
NR4A2 MUTATED 1 0 1 2
NR4A2 WILD-TYPE 32 31 26 17
'NR4A2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.267 (Fisher's exact test), Q value = 0.59

Table S3520.  Gene #319: 'NR4A2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
NR4A2 MUTATED 1 1 1 1
NR4A2 WILD-TYPE 53 9 23 21
'LATS1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0607 (Fisher's exact test), Q value = 0.27

Table S3521.  Gene #320: 'LATS1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
LATS1 MUTATED 3 1 0 3
LATS1 WILD-TYPE 43 57 64 40
'LATS1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.547 (Fisher's exact test), Q value = 0.87

Table S3522.  Gene #320: 'LATS1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
LATS1 MUTATED 3 2 2
LATS1 WILD-TYPE 48 81 75
'LATS1 MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-04 (Fisher's exact test), Q value = 0.0052

Table S3523.  Gene #320: 'LATS1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
LATS1 MUTATED 18 2 1 0
LATS1 WILD-TYPE 160 181 100 20

Figure S1129.  Get High-res Image Gene #320: 'LATS1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'LATS1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0622 (Fisher's exact test), Q value = 0.27

Table S3524.  Gene #320: 'LATS1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
LATS1 MUTATED 4 1 9
LATS1 WILD-TYPE 83 79 91
'LATS1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.25 (Fisher's exact test), Q value = 0.58

Table S3525.  Gene #320: 'LATS1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
LATS1 MUTATED 2 5 9
LATS1 WILD-TYPE 87 155 129
'LATS1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.523 (Fisher's exact test), Q value = 0.84

Table S3526.  Gene #320: 'LATS1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
LATS1 MUTATED 9 6 1
LATS1 WILD-TYPE 173 127 71
'LATS1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0201 (Fisher's exact test), Q value = 0.14

Table S3527.  Gene #320: 'LATS1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
LATS1 MUTATED 1 9 5 6
LATS1 WILD-TYPE 111 87 87 180

Figure S1130.  Get High-res Image Gene #320: 'LATS1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'LATS1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0021 (Fisher's exact test), Q value = 0.039

Table S3528.  Gene #320: 'LATS1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
LATS1 MUTATED 3 0 8 3 1 2 4
LATS1 WILD-TYPE 57 50 41 37 62 123 95

Figure S1131.  Get High-res Image Gene #320: 'LATS1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'LATS1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.416 (Fisher's exact test), Q value = 0.74

Table S3529.  Gene #320: 'LATS1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
LATS1 MUTATED 9 2 2 7
LATS1 WILD-TYPE 121 76 66 189
'LATS1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00114 (Fisher's exact test), Q value = 0.027

Table S3530.  Gene #320: 'LATS1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
LATS1 MUTATED 2 3 2 3 10 0 0 0 0
LATS1 WILD-TYPE 38 59 26 77 59 48 43 28 74

Figure S1132.  Get High-res Image Gene #320: 'LATS1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'LATS1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00396 (Fisher's exact test), Q value = 0.057

Table S3531.  Gene #320: 'LATS1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
LATS1 MUTATED 1 0 2 5
LATS1 WILD-TYPE 32 31 25 14

Figure S1133.  Get High-res Image Gene #320: 'LATS1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'LATS1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.162 (Fisher's exact test), Q value = 0.45

Table S3532.  Gene #320: 'LATS1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
LATS1 MUTATED 4 0 4 0
LATS1 WILD-TYPE 50 10 20 22
'THAP9 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0662 (Fisher's exact test), Q value = 0.28

Table S3533.  Gene #321: 'THAP9 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
THAP9 MUTATED 2 1 1 5
THAP9 WILD-TYPE 44 57 63 38
'THAP9 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.34 (Fisher's exact test), Q value = 0.67

Table S3534.  Gene #321: 'THAP9 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
THAP9 MUTATED 4 2 3
THAP9 WILD-TYPE 47 81 74
'THAP9 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.461 (Fisher's exact test), Q value = 0.79

Table S3535.  Gene #321: 'THAP9 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
THAP9 MUTATED 9 4 3 0
THAP9 WILD-TYPE 169 179 98 20
'THAP9 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.503 (Fisher's exact test), Q value = 0.83

Table S3536.  Gene #321: 'THAP9 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
THAP9 MUTATED 1 2 4
THAP9 WILD-TYPE 86 78 96
'THAP9 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.566 (Fisher's exact test), Q value = 0.87

Table S3537.  Gene #321: 'THAP9 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
THAP9 MUTATED 2 7 3
THAP9 WILD-TYPE 87 153 135
'THAP9 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.287 (Fisher's exact test), Q value = 0.62

Table S3538.  Gene #321: 'THAP9 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
THAP9 MUTATED 3 6 3
THAP9 WILD-TYPE 179 127 69
'THAP9 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.185 (Fisher's exact test), Q value = 0.49

Table S3539.  Gene #321: 'THAP9 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
THAP9 MUTATED 4 4 0 8
THAP9 WILD-TYPE 108 92 92 178
'THAP9 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.189 (Fisher's exact test), Q value = 0.49

Table S3540.  Gene #321: 'THAP9 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
THAP9 MUTATED 4 2 1 1 0 2 6
THAP9 WILD-TYPE 56 48 48 39 63 123 93
'THAP9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.23 (Fisher's exact test), Q value = 0.55

Table S3541.  Gene #321: 'THAP9 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
THAP9 MUTATED 6 0 1 6
THAP9 WILD-TYPE 124 78 67 190
'THAP9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.158 (Fisher's exact test), Q value = 0.45

Table S3542.  Gene #321: 'THAP9 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
THAP9 MUTATED 2 0 3 1 3 1 1 1 1
THAP9 WILD-TYPE 38 62 25 79 66 47 42 27 73
'ZNF449 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00813 (Fisher's exact test), Q value = 0.084

Table S3543.  Gene #322: 'ZNF449 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ZNF449 MUTATED 0 0 0 3
ZNF449 WILD-TYPE 46 58 64 40

Figure S1134.  Get High-res Image Gene #322: 'ZNF449 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'ZNF449 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.351 (Fisher's exact test), Q value = 0.68

Table S3544.  Gene #322: 'ZNF449 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ZNF449 MUTATED 1 0 2
ZNF449 WILD-TYPE 50 83 75
'ZNF449 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0227 (Fisher's exact test), Q value = 0.15

Table S3545.  Gene #322: 'ZNF449 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ZNF449 MUTATED 11 2 1 0
ZNF449 WILD-TYPE 167 181 100 20

Figure S1135.  Get High-res Image Gene #322: 'ZNF449 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ZNF449 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.25 (Fisher's exact test), Q value = 0.58

Table S3546.  Gene #322: 'ZNF449 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ZNF449 MUTATED 2 2 7
ZNF449 WILD-TYPE 85 78 93
'ZNF449 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0858 (Fisher's exact test), Q value = 0.32

Table S3547.  Gene #322: 'ZNF449 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ZNF449 MUTATED 0 5 7
ZNF449 WILD-TYPE 89 155 131
'ZNF449 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.636 (Fisher's exact test), Q value = 0.93

Table S3548.  Gene #322: 'ZNF449 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ZNF449 MUTATED 7 4 1
ZNF449 WILD-TYPE 175 129 71
'ZNF449 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.255 (Fisher's exact test), Q value = 0.58

Table S3549.  Gene #322: 'ZNF449 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ZNF449 MUTATED 2 5 4 3
ZNF449 WILD-TYPE 110 91 88 183
'ZNF449 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00144 (Fisher's exact test), Q value = 0.031

Table S3550.  Gene #322: 'ZNF449 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ZNF449 MUTATED 2 0 6 1 3 0 2
ZNF449 WILD-TYPE 58 50 43 39 60 125 97

Figure S1136.  Get High-res Image Gene #322: 'ZNF449 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ZNF449 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.762 (Fisher's exact test), Q value = 1

Table S3551.  Gene #322: 'ZNF449 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ZNF449 MUTATED 5 2 2 4
ZNF449 WILD-TYPE 125 76 66 192
'ZNF449 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0927 (Fisher's exact test), Q value = 0.33

Table S3552.  Gene #322: 'ZNF449 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ZNF449 MUTATED 1 4 1 1 5 1 0 0 0
ZNF449 WILD-TYPE 39 58 27 79 64 47 43 28 74
'ZNF449 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.425 (Fisher's exact test), Q value = 0.75

Table S3553.  Gene #322: 'ZNF449 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
ZNF449 MUTATED 0 1 2 1
ZNF449 WILD-TYPE 33 30 25 18
'ZNF449 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0965 (Fisher's exact test), Q value = 0.34

Table S3554.  Gene #322: 'ZNF449 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
ZNF449 MUTATED 2 2 0 0
ZNF449 WILD-TYPE 52 8 24 22
'PRDM1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0528 (Fisher's exact test), Q value = 0.25

Table S3555.  Gene #323: 'PRDM1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
PRDM1 MUTATED 0 0 2 3
PRDM1 WILD-TYPE 46 58 62 40
'PRDM1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.739 (Fisher's exact test), Q value = 1

Table S3556.  Gene #323: 'PRDM1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
PRDM1 MUTATED 2 2 1
PRDM1 WILD-TYPE 49 81 76
'PRDM1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0834 (Fisher's exact test), Q value = 0.31

Table S3557.  Gene #323: 'PRDM1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
PRDM1 MUTATED 14 6 2 0
PRDM1 WILD-TYPE 164 177 99 20
'PRDM1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0769 (Fisher's exact test), Q value = 0.3

Table S3558.  Gene #323: 'PRDM1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
PRDM1 MUTATED 3 3 11
PRDM1 WILD-TYPE 84 77 89
'PRDM1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.792 (Fisher's exact test), Q value = 1

Table S3559.  Gene #323: 'PRDM1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
PRDM1 MUTATED 3 9 7
PRDM1 WILD-TYPE 86 151 131
'PRDM1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.3 (Fisher's exact test), Q value = 0.63

Table S3560.  Gene #323: 'PRDM1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
PRDM1 MUTATED 10 8 1
PRDM1 WILD-TYPE 172 125 71
'PRDM1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0994 (Fisher's exact test), Q value = 0.35

Table S3561.  Gene #323: 'PRDM1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
PRDM1 MUTATED 4 9 4 5
PRDM1 WILD-TYPE 108 87 88 181
'PRDM1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.024 (Fisher's exact test), Q value = 0.16

Table S3562.  Gene #323: 'PRDM1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
PRDM1 MUTATED 3 4 7 1 2 2 3
PRDM1 WILD-TYPE 57 46 42 39 61 123 96

Figure S1137.  Get High-res Image Gene #323: 'PRDM1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'PRDM1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00183 (Fisher's exact test), Q value = 0.036

Table S3563.  Gene #323: 'PRDM1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
PRDM1 MUTATED 14 1 1 5
PRDM1 WILD-TYPE 116 77 67 191

Figure S1138.  Get High-res Image Gene #323: 'PRDM1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'PRDM1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0712 (Fisher's exact test), Q value = 0.29

Table S3564.  Gene #323: 'PRDM1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
PRDM1 MUTATED 2 1 1 6 8 0 1 0 2
PRDM1 WILD-TYPE 38 61 27 74 61 48 42 28 72
'MBTD1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.738 (Fisher's exact test), Q value = 1

Table S3565.  Gene #324: 'MBTD1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
MBTD1 MUTATED 6 3 2 0
MBTD1 WILD-TYPE 172 180 99 20
'MBTD1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.465 (Fisher's exact test), Q value = 0.79

Table S3566.  Gene #324: 'MBTD1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
MBTD1 MUTATED 2 3 6
MBTD1 WILD-TYPE 85 77 94
'MBTD1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.735 (Fisher's exact test), Q value = 1

Table S3567.  Gene #324: 'MBTD1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
MBTD1 MUTATED 1 3 4
MBTD1 WILD-TYPE 88 157 134
'MBTD1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S3568.  Gene #324: 'MBTD1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
MBTD1 MUTATED 4 3 1
MBTD1 WILD-TYPE 178 130 71
'MBTD1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00421 (Fisher's exact test), Q value = 0.059

Table S3569.  Gene #324: 'MBTD1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
MBTD1 MUTATED 2 5 4 0
MBTD1 WILD-TYPE 110 91 88 186

Figure S1139.  Get High-res Image Gene #324: 'MBTD1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'MBTD1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0011 (Fisher's exact test), Q value = 0.026

Table S3570.  Gene #324: 'MBTD1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
MBTD1 MUTATED 2 2 5 1 1 0 0
MBTD1 WILD-TYPE 58 48 44 39 62 125 99

Figure S1140.  Get High-res Image Gene #324: 'MBTD1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'MBTD1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0741 (Fisher's exact test), Q value = 0.29

Table S3571.  Gene #324: 'MBTD1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
MBTD1 MUTATED 5 3 2 1
MBTD1 WILD-TYPE 125 75 66 195
'MBTD1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.159 (Fisher's exact test), Q value = 0.45

Table S3572.  Gene #324: 'MBTD1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
MBTD1 MUTATED 1 3 0 1 3 0 3 0 0
MBTD1 WILD-TYPE 39 59 28 79 66 48 40 28 74
'MBTD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0134 (Fisher's exact test), Q value = 0.11

Table S3573.  Gene #324: 'MBTD1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
MBTD1 MUTATED 0 1 0 3
MBTD1 WILD-TYPE 33 30 27 16

Figure S1141.  Get High-res Image Gene #324: 'MBTD1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'MBTD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.603 (Fisher's exact test), Q value = 0.91

Table S3574.  Gene #324: 'MBTD1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
MBTD1 MUTATED 2 1 1 0
MBTD1 WILD-TYPE 52 9 23 22
'MKL2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.034 (Fisher's exact test), Q value = 0.19

Table S3575.  Gene #325: 'MKL2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
MKL2 MUTATED 9 1 1 0
MKL2 WILD-TYPE 169 182 100 20

Figure S1142.  Get High-res Image Gene #325: 'MKL2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'MKL2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.437 (Fisher's exact test), Q value = 0.76

Table S3576.  Gene #325: 'MKL2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
MKL2 MUTATED 3 1 5
MKL2 WILD-TYPE 84 79 95
'MKL2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.658 (Fisher's exact test), Q value = 0.94

Table S3577.  Gene #325: 'MKL2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
MKL2 MUTATED 2 2 4
MKL2 WILD-TYPE 87 158 134
'MKL2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.895 (Fisher's exact test), Q value = 1

Table S3578.  Gene #325: 'MKL2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
MKL2 MUTATED 5 2 1
MKL2 WILD-TYPE 177 131 71
'MKL2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.167 (Fisher's exact test), Q value = 0.46

Table S3579.  Gene #325: 'MKL2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
MKL2 MUTATED 2 2 5 2
MKL2 WILD-TYPE 110 94 87 184
'MKL2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 3e-05 (Fisher's exact test), Q value = 0.0022

Table S3580.  Gene #325: 'MKL2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
MKL2 MUTATED 2 1 7 0 0 0 1
MKL2 WILD-TYPE 58 49 42 40 63 125 98

Figure S1143.  Get High-res Image Gene #325: 'MKL2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'MKL2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0827 (Fisher's exact test), Q value = 0.31

Table S3581.  Gene #325: 'MKL2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
MKL2 MUTATED 7 1 0 3
MKL2 WILD-TYPE 123 77 68 193
'MKL2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.49 (Fisher's exact test), Q value = 0.82

Table S3582.  Gene #325: 'MKL2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
MKL2 MUTATED 1 3 1 2 3 0 1 0 0
MKL2 WILD-TYPE 39 59 27 78 66 48 42 28 74
'MKL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0248 (Fisher's exact test), Q value = 0.16

Table S3583.  Gene #325: 'MKL2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
MKL2 MUTATED 2 0 0 3
MKL2 WILD-TYPE 31 31 27 16

Figure S1144.  Get High-res Image Gene #325: 'MKL2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'MKL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.27 (Fisher's exact test), Q value = 0.59

Table S3584.  Gene #325: 'MKL2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
MKL2 MUTATED 5 0 0 0
MKL2 WILD-TYPE 49 10 24 22
'LIG1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00143 (Fisher's exact test), Q value = 0.031

Table S3585.  Gene #326: 'LIG1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
LIG1 MUTATED 0 0 0 4
LIG1 WILD-TYPE 46 58 64 39

Figure S1145.  Get High-res Image Gene #326: 'LIG1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'LIG1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.557 (Fisher's exact test), Q value = 0.87

Table S3586.  Gene #326: 'LIG1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
LIG1 MUTATED 2 1 1
LIG1 WILD-TYPE 49 82 76
'LIG1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0191 (Fisher's exact test), Q value = 0.14

Table S3587.  Gene #326: 'LIG1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
LIG1 MUTATED 11 2 4 2
LIG1 WILD-TYPE 167 181 97 18

Figure S1146.  Get High-res Image Gene #326: 'LIG1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'LIG1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.298 (Fisher's exact test), Q value = 0.63

Table S3588.  Gene #326: 'LIG1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
LIG1 MUTATED 7 2 6
LIG1 WILD-TYPE 80 78 94
'LIG1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.393 (Fisher's exact test), Q value = 0.72

Table S3589.  Gene #326: 'LIG1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
LIG1 MUTATED 2 8 9
LIG1 WILD-TYPE 87 152 129
'LIG1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.952 (Fisher's exact test), Q value = 1

Table S3590.  Gene #326: 'LIG1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
LIG1 MUTATED 10 6 3
LIG1 WILD-TYPE 172 127 69
'LIG1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0765 (Fisher's exact test), Q value = 0.3

Table S3591.  Gene #326: 'LIG1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
LIG1 MUTATED 3 8 5 4
LIG1 WILD-TYPE 109 88 87 182
'LIG1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0071 (Fisher's exact test), Q value = 0.078

Table S3592.  Gene #326: 'LIG1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
LIG1 MUTATED 2 3 6 2 2 0 5
LIG1 WILD-TYPE 58 47 43 38 61 125 94

Figure S1147.  Get High-res Image Gene #326: 'LIG1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'LIG1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.139 (Fisher's exact test), Q value = 0.42

Table S3593.  Gene #326: 'LIG1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
LIG1 MUTATED 10 2 2 5
LIG1 WILD-TYPE 120 76 66 191
'LIG1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0368 (Fisher's exact test), Q value = 0.2

Table S3594.  Gene #326: 'LIG1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
LIG1 MUTATED 2 3 2 1 6 1 4 0 0
LIG1 WILD-TYPE 38 59 26 79 63 47 39 28 74

Figure S1148.  Get High-res Image Gene #326: 'LIG1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'LIG1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.317 (Fisher's exact test), Q value = 0.65

Table S3595.  Gene #326: 'LIG1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
LIG1 MUTATED 1 3 1 3
LIG1 WILD-TYPE 32 28 26 16
'LIG1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.95 (Fisher's exact test), Q value = 1

Table S3596.  Gene #326: 'LIG1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
LIG1 MUTATED 5 0 2 1
LIG1 WILD-TYPE 49 10 22 21
'ZNF708 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0154 (Fisher's exact test), Q value = 0.12

Table S3597.  Gene #327: 'ZNF708 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ZNF708 MUTATED 1 0 0 3
ZNF708 WILD-TYPE 45 58 64 40

Figure S1149.  Get High-res Image Gene #327: 'ZNF708 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'ZNF708 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S3598.  Gene #327: 'ZNF708 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ZNF708 MUTATED 1 2 1
ZNF708 WILD-TYPE 50 81 76
'ZNF708 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0329 (Fisher's exact test), Q value = 0.19

Table S3599.  Gene #327: 'ZNF708 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ZNF708 MUTATED 9 3 0 1
ZNF708 WILD-TYPE 169 180 101 19

Figure S1150.  Get High-res Image Gene #327: 'ZNF708 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ZNF708 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.638 (Fisher's exact test), Q value = 0.93

Table S3600.  Gene #327: 'ZNF708 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ZNF708 MUTATED 4 3 2
ZNF708 WILD-TYPE 83 77 98
'ZNF708 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.506 (Fisher's exact test), Q value = 0.83

Table S3601.  Gene #327: 'ZNF708 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ZNF708 MUTATED 1 6 3
ZNF708 WILD-TYPE 88 154 135
'ZNF708 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.483 (Fisher's exact test), Q value = 0.81

Table S3602.  Gene #327: 'ZNF708 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ZNF708 MUTATED 3 5 2
ZNF708 WILD-TYPE 179 128 70
'ZNF708 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.836 (Fisher's exact test), Q value = 1

Table S3603.  Gene #327: 'ZNF708 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ZNF708 MUTATED 4 2 3 4
ZNF708 WILD-TYPE 108 94 89 182
'ZNF708 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0618 (Fisher's exact test), Q value = 0.27

Table S3604.  Gene #327: 'ZNF708 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ZNF708 MUTATED 4 1 3 2 0 1 2
ZNF708 WILD-TYPE 56 49 46 38 63 124 97
'ZNF708 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.14 (Fisher's exact test), Q value = 0.42

Table S3605.  Gene #327: 'ZNF708 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ZNF708 MUTATED 6 3 0 3
ZNF708 WILD-TYPE 124 75 68 193
'ZNF708 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.603 (Fisher's exact test), Q value = 0.91

Table S3606.  Gene #327: 'ZNF708 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ZNF708 MUTATED 2 2 1 3 1 2 1 0 0
ZNF708 WILD-TYPE 38 60 27 77 68 46 42 28 74
'IL13RA2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.788 (Fisher's exact test), Q value = 1

Table S3607.  Gene #328: 'IL13RA2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
IL13RA2 MUTATED 1 0 1 1
IL13RA2 WILD-TYPE 45 58 63 42
'IL13RA2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S3608.  Gene #328: 'IL13RA2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
IL13RA2 MUTATED 1 1 1
IL13RA2 WILD-TYPE 50 82 76
'IL13RA2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.608 (Fisher's exact test), Q value = 0.91

Table S3609.  Gene #328: 'IL13RA2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
IL13RA2 MUTATED 8 4 4 0
IL13RA2 WILD-TYPE 170 179 97 20
'IL13RA2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.776 (Fisher's exact test), Q value = 1

Table S3610.  Gene #328: 'IL13RA2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
IL13RA2 MUTATED 4 5 4
IL13RA2 WILD-TYPE 83 75 96
'IL13RA2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0851 (Fisher's exact test), Q value = 0.32

Table S3611.  Gene #328: 'IL13RA2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
IL13RA2 MUTATED 0 8 5
IL13RA2 WILD-TYPE 89 152 133
'IL13RA2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.363 (Fisher's exact test), Q value = 0.69

Table S3612.  Gene #328: 'IL13RA2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
IL13RA2 MUTATED 5 7 1
IL13RA2 WILD-TYPE 177 126 71
'IL13RA2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.413 (Fisher's exact test), Q value = 0.74

Table S3613.  Gene #328: 'IL13RA2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
IL13RA2 MUTATED 6 4 2 4
IL13RA2 WILD-TYPE 106 92 90 182
'IL13RA2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0311 (Fisher's exact test), Q value = 0.18

Table S3614.  Gene #328: 'IL13RA2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
IL13RA2 MUTATED 5 1 1 4 1 1 3
IL13RA2 WILD-TYPE 55 49 48 36 62 124 96

Figure S1151.  Get High-res Image Gene #328: 'IL13RA2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'IL13RA2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0347 (Fisher's exact test), Q value = 0.19

Table S3615.  Gene #328: 'IL13RA2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
IL13RA2 MUTATED 9 0 1 5
IL13RA2 WILD-TYPE 121 78 67 191

Figure S1152.  Get High-res Image Gene #328: 'IL13RA2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'IL13RA2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.207 (Fisher's exact test), Q value = 0.51

Table S3616.  Gene #328: 'IL13RA2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
IL13RA2 MUTATED 3 1 2 5 1 2 0 0 1
IL13RA2 WILD-TYPE 37 61 26 75 68 46 43 28 73
'IL13RA2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.781 (Fisher's exact test), Q value = 1

Table S3617.  Gene #328: 'IL13RA2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
IL13RA2 MUTATED 1 0 1 1
IL13RA2 WILD-TYPE 32 31 26 18
'IL13RA2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S3618.  Gene #328: 'IL13RA2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
IL13RA2 MUTATED 2 0 1 0
IL13RA2 WILD-TYPE 52 10 23 22
'FGFR3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0175 (Fisher's exact test), Q value = 0.13

Table S3619.  Gene #329: 'FGFR3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
FGFR3 MUTATED 16 4 3 0
FGFR3 WILD-TYPE 162 179 98 20

Figure S1153.  Get High-res Image Gene #329: 'FGFR3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'FGFR3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.244 (Fisher's exact test), Q value = 0.57

Table S3620.  Gene #329: 'FGFR3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
FGFR3 MUTATED 8 3 10
FGFR3 WILD-TYPE 79 77 90
'FGFR3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.136 (Fisher's exact test), Q value = 0.41

Table S3621.  Gene #329: 'FGFR3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
FGFR3 MUTATED 1 9 9
FGFR3 WILD-TYPE 88 151 129
'FGFR3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0669 (Fisher's exact test), Q value = 0.28

Table S3622.  Gene #329: 'FGFR3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
FGFR3 MUTATED 11 8 0
FGFR3 WILD-TYPE 171 125 72
'FGFR3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00119 (Fisher's exact test), Q value = 0.028

Table S3623.  Gene #329: 'FGFR3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
FGFR3 MUTATED 4 7 10 2
FGFR3 WILD-TYPE 108 89 82 184

Figure S1154.  Get High-res Image Gene #329: 'FGFR3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'FGFR3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S3624.  Gene #329: 'FGFR3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
FGFR3 MUTATED 0 9 8 0 4 0 2
FGFR3 WILD-TYPE 60 41 41 40 59 125 97

Figure S1155.  Get High-res Image Gene #329: 'FGFR3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'FGFR3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00134 (Fisher's exact test), Q value = 0.03

Table S3625.  Gene #329: 'FGFR3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
FGFR3 MUTATED 12 7 1 3
FGFR3 WILD-TYPE 118 71 67 193

Figure S1156.  Get High-res Image Gene #329: 'FGFR3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'FGFR3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.108 (Fisher's exact test), Q value = 0.36

Table S3626.  Gene #329: 'FGFR3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
FGFR3 MUTATED 3 8 1 3 4 0 2 0 2
FGFR3 WILD-TYPE 37 54 27 77 65 48 41 28 72
'FGFR3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.265 (Fisher's exact test), Q value = 0.59

Table S3627.  Gene #329: 'FGFR3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
FGFR3 MUTATED 4 3 0 2
FGFR3 WILD-TYPE 29 28 27 17
'FGFR3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.913 (Fisher's exact test), Q value = 1

Table S3628.  Gene #329: 'FGFR3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
FGFR3 MUTATED 5 1 2 1
FGFR3 WILD-TYPE 49 9 22 21
'PTPN12 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00704 (Fisher's exact test), Q value = 0.077

Table S3629.  Gene #330: 'PTPN12 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
PTPN12 MUTATED 4 0 1 5
PTPN12 WILD-TYPE 42 58 63 38

Figure S1157.  Get High-res Image Gene #330: 'PTPN12 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'PTPN12 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.233 (Fisher's exact test), Q value = 0.55

Table S3630.  Gene #330: 'PTPN12 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
PTPN12 MUTATED 5 3 2
PTPN12 WILD-TYPE 46 80 75
'PTPN12 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00016 (Fisher's exact test), Q value = 0.0072

Table S3631.  Gene #330: 'PTPN12 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
PTPN12 MUTATED 18 2 1 0
PTPN12 WILD-TYPE 160 181 100 20

Figure S1158.  Get High-res Image Gene #330: 'PTPN12 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'PTPN12 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.853 (Fisher's exact test), Q value = 1

Table S3632.  Gene #330: 'PTPN12 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
PTPN12 MUTATED 4 2 4
PTPN12 WILD-TYPE 83 78 96
'PTPN12 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.616 (Fisher's exact test), Q value = 0.92

Table S3633.  Gene #330: 'PTPN12 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
PTPN12 MUTATED 2 7 7
PTPN12 WILD-TYPE 87 153 131
'PTPN12 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.497 (Fisher's exact test), Q value = 0.82

Table S3634.  Gene #330: 'PTPN12 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
PTPN12 MUTATED 6 8 2
PTPN12 WILD-TYPE 176 125 70
'PTPN12 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.798 (Fisher's exact test), Q value = 1

Table S3635.  Gene #330: 'PTPN12 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
PTPN12 MUTATED 3 4 4 10
PTPN12 WILD-TYPE 109 92 88 176
'PTPN12 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00476 (Fisher's exact test), Q value = 0.062

Table S3636.  Gene #330: 'PTPN12 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
PTPN12 MUTATED 2 0 6 0 2 2 9
PTPN12 WILD-TYPE 58 50 43 40 61 123 90

Figure S1159.  Get High-res Image Gene #330: 'PTPN12 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'PTPN12 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.382 (Fisher's exact test), Q value = 0.71

Table S3637.  Gene #330: 'PTPN12 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
PTPN12 MUTATED 4 3 1 12
PTPN12 WILD-TYPE 126 75 67 184
'PTPN12 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0993 (Fisher's exact test), Q value = 0.35

Table S3638.  Gene #330: 'PTPN12 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
PTPN12 MUTATED 0 2 2 3 8 0 2 1 2
PTPN12 WILD-TYPE 40 60 26 77 61 48 41 27 72
'PTPN12 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.254 (Fisher's exact test), Q value = 0.58

Table S3639.  Gene #330: 'PTPN12 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
PTPN12 MUTATED 2 0 0 1
PTPN12 WILD-TYPE 31 31 27 18
'PTPN12 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S3640.  Gene #330: 'PTPN12 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
PTPN12 MUTATED 2 0 1 0
PTPN12 WILD-TYPE 52 10 23 22
'TUBE1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.309 (Fisher's exact test), Q value = 0.64

Table S3641.  Gene #331: 'TUBE1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
TUBE1 MUTATED 1 1 0 2
TUBE1 WILD-TYPE 45 57 64 41
'TUBE1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S3642.  Gene #331: 'TUBE1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
TUBE1 MUTATED 1 2 1
TUBE1 WILD-TYPE 50 81 76
'TUBE1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00109 (Fisher's exact test), Q value = 0.026

Table S3643.  Gene #331: 'TUBE1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
TUBE1 MUTATED 11 0 1 0
TUBE1 WILD-TYPE 167 183 100 20

Figure S1160.  Get High-res Image Gene #331: 'TUBE1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'TUBE1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.245 (Fisher's exact test), Q value = 0.57

Table S3644.  Gene #331: 'TUBE1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
TUBE1 MUTATED 2 1 6
TUBE1 WILD-TYPE 85 79 94
'TUBE1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.512 (Fisher's exact test), Q value = 0.83

Table S3645.  Gene #331: 'TUBE1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
TUBE1 MUTATED 1 3 5
TUBE1 WILD-TYPE 88 157 133
'TUBE1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.402 (Fisher's exact test), Q value = 0.73

Table S3646.  Gene #331: 'TUBE1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
TUBE1 MUTATED 5 4 0
TUBE1 WILD-TYPE 177 129 72
'TUBE1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.356 (Fisher's exact test), Q value = 0.68

Table S3647.  Gene #331: 'TUBE1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
TUBE1 MUTATED 2 5 2 3
TUBE1 WILD-TYPE 110 91 90 183
'TUBE1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.211 (Fisher's exact test), Q value = 0.52

Table S3648.  Gene #331: 'TUBE1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
TUBE1 MUTATED 2 1 4 1 1 1 2
TUBE1 WILD-TYPE 58 49 45 39 62 124 97
'TUBE1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.118 (Fisher's exact test), Q value = 0.38

Table S3649.  Gene #331: 'TUBE1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
TUBE1 MUTATED 7 1 0 4
TUBE1 WILD-TYPE 123 77 68 192
'TUBE1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0805 (Fisher's exact test), Q value = 0.31

Table S3650.  Gene #331: 'TUBE1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
TUBE1 MUTATED 1 2 1 1 6 1 0 0 0
TUBE1 WILD-TYPE 39 60 27 79 63 47 43 28 74
'TGFBR2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.111 (Fisher's exact test), Q value = 0.37

Table S3651.  Gene #332: 'TGFBR2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
TGFBR2 MUTATED 2 0 1 3
TGFBR2 WILD-TYPE 44 58 63 40
'TGFBR2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.337 (Fisher's exact test), Q value = 0.66

Table S3652.  Gene #332: 'TGFBR2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
TGFBR2 MUTATED 3 2 1
TGFBR2 WILD-TYPE 48 81 76
'TGFBR2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0392 (Fisher's exact test), Q value = 0.21

Table S3653.  Gene #332: 'TGFBR2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
TGFBR2 MUTATED 14 6 1 1
TGFBR2 WILD-TYPE 164 177 100 19

Figure S1161.  Get High-res Image Gene #332: 'TGFBR2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'TGFBR2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.946 (Fisher's exact test), Q value = 1

Table S3654.  Gene #332: 'TGFBR2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
TGFBR2 MUTATED 5 5 5
TGFBR2 WILD-TYPE 82 75 95
'TGFBR2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.712 (Fisher's exact test), Q value = 0.98

Table S3655.  Gene #332: 'TGFBR2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
TGFBR2 MUTATED 5 7 9
TGFBR2 WILD-TYPE 84 153 129
'TGFBR2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.53 (Fisher's exact test), Q value = 0.85

Table S3656.  Gene #332: 'TGFBR2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
TGFBR2 MUTATED 11 5 5
TGFBR2 WILD-TYPE 171 128 67
'TGFBR2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.259 (Fisher's exact test), Q value = 0.58

Table S3657.  Gene #332: 'TGFBR2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
TGFBR2 MUTATED 6 8 3 6
TGFBR2 WILD-TYPE 106 88 89 180
'TGFBR2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0321 (Fisher's exact test), Q value = 0.18

Table S3658.  Gene #332: 'TGFBR2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
TGFBR2 MUTATED 4 1 7 1 2 2 6
TGFBR2 WILD-TYPE 56 49 42 39 61 123 93

Figure S1162.  Get High-res Image Gene #332: 'TGFBR2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'TGFBR2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.548 (Fisher's exact test), Q value = 0.87

Table S3659.  Gene #332: 'TGFBR2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
TGFBR2 MUTATED 6 6 2 8
TGFBR2 WILD-TYPE 124 72 66 188
'TGFBR2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.131 (Fisher's exact test), Q value = 0.4

Table S3660.  Gene #332: 'TGFBR2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
TGFBR2 MUTATED 1 2 2 3 9 2 1 1 1
TGFBR2 WILD-TYPE 39 60 26 77 60 46 42 27 73
'TGFBR2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.678 (Fisher's exact test), Q value = 0.96

Table S3661.  Gene #332: 'TGFBR2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
TGFBR2 MUTATED 3 2 2 0
TGFBR2 WILD-TYPE 30 29 25 19
'TGFBR2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.682 (Fisher's exact test), Q value = 0.96

Table S3662.  Gene #332: 'TGFBR2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
TGFBR2 MUTATED 3 1 1 2
TGFBR2 WILD-TYPE 51 9 23 20
'OR1J2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.93 (Fisher's exact test), Q value = 1

Table S3663.  Gene #333: 'OR1J2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
OR1J2 MUTATED 6 5 2 0
OR1J2 WILD-TYPE 172 178 99 20
'OR1J2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.431 (Fisher's exact test), Q value = 0.76

Table S3664.  Gene #333: 'OR1J2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
OR1J2 MUTATED 2 5 4
OR1J2 WILD-TYPE 85 75 96
'OR1J2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.506 (Fisher's exact test), Q value = 0.83

Table S3665.  Gene #333: 'OR1J2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
OR1J2 MUTATED 1 6 3
OR1J2 WILD-TYPE 88 154 135
'OR1J2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.012 (Fisher's exact test), Q value = 0.11

Table S3666.  Gene #333: 'OR1J2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
OR1J2 MUTATED 2 8 0
OR1J2 WILD-TYPE 180 125 72

Figure S1163.  Get High-res Image Gene #333: 'OR1J2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'OR1J2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0116 (Fisher's exact test), Q value = 0.11

Table S3667.  Gene #333: 'OR1J2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
OR1J2 MUTATED 5 6 0 2
OR1J2 WILD-TYPE 107 90 92 184

Figure S1164.  Get High-res Image Gene #333: 'OR1J2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'OR1J2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00666 (Fisher's exact test), Q value = 0.075

Table S3668.  Gene #333: 'OR1J2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
OR1J2 MUTATED 2 5 1 2 2 0 1
OR1J2 WILD-TYPE 58 45 48 38 61 125 98

Figure S1165.  Get High-res Image Gene #333: 'OR1J2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'OR1J2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0018 (Fisher's exact test), Q value = 0.035

Table S3669.  Gene #333: 'OR1J2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
OR1J2 MUTATED 10 0 0 3
OR1J2 WILD-TYPE 120 78 68 193

Figure S1166.  Get High-res Image Gene #333: 'OR1J2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'OR1J2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0413 (Fisher's exact test), Q value = 0.21

Table S3670.  Gene #333: 'OR1J2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
OR1J2 MUTATED 4 0 2 2 2 2 1 0 0
OR1J2 WILD-TYPE 36 62 26 78 67 46 42 28 74

Figure S1167.  Get High-res Image Gene #333: 'OR1J2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'SPR MUTATION STATUS' versus 'CN_CNMF'

P value = 0.326 (Fisher's exact test), Q value = 0.66

Table S3671.  Gene #334: 'SPR MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
SPR MUTATED 5 1 1 0
SPR WILD-TYPE 173 182 100 20
'SPR MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0262 (Fisher's exact test), Q value = 0.16

Table S3672.  Gene #334: 'SPR MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
SPR MUTATED 1 0 6
SPR WILD-TYPE 86 80 94

Figure S1168.  Get High-res Image Gene #334: 'SPR MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'SPR MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3673.  Gene #334: 'SPR MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
SPR MUTATED 1 2 1
SPR WILD-TYPE 88 158 137
'SPR MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S3674.  Gene #334: 'SPR MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
SPR MUTATED 2 1 1
SPR WILD-TYPE 180 132 71
'SPR MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00021 (Fisher's exact test), Q value = 0.0086

Table S3675.  Gene #334: 'SPR MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
SPR MUTATED 0 6 1 0
SPR WILD-TYPE 112 90 91 186

Figure S1169.  Get High-res Image Gene #334: 'SPR MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'SPR MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 8e-05 (Fisher's exact test), Q value = 0.0045

Table S3676.  Gene #334: 'SPR MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
SPR MUTATED 0 3 4 0 0 0 0
SPR WILD-TYPE 60 47 45 40 63 125 99

Figure S1170.  Get High-res Image Gene #334: 'SPR MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'SPR MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0734 (Fisher's exact test), Q value = 0.29

Table S3677.  Gene #334: 'SPR MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
SPR MUTATED 5 1 0 1
SPR WILD-TYPE 125 77 68 195
'SPR MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.417 (Fisher's exact test), Q value = 0.75

Table S3678.  Gene #334: 'SPR MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
SPR MUTATED 1 1 1 1 3 0 0 0 0
SPR WILD-TYPE 39 61 27 79 66 48 43 28 74
'TRIM32 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.181 (Fisher's exact test), Q value = 0.48

Table S3679.  Gene #335: 'TRIM32 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
TRIM32 MUTATED 3 0 1 1
TRIM32 WILD-TYPE 43 58 63 42
'TRIM32 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.256 (Fisher's exact test), Q value = 0.58

Table S3680.  Gene #335: 'TRIM32 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
TRIM32 MUTATED 3 1 1
TRIM32 WILD-TYPE 48 82 76
'TRIM32 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.568 (Fisher's exact test), Q value = 0.88

Table S3681.  Gene #335: 'TRIM32 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
TRIM32 MUTATED 7 3 2 0
TRIM32 WILD-TYPE 171 180 99 20
'TRIM32 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3682.  Gene #335: 'TRIM32 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
TRIM32 MUTATED 2 2 2
TRIM32 WILD-TYPE 85 78 98
'TRIM32 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.347 (Fisher's exact test), Q value = 0.67

Table S3683.  Gene #335: 'TRIM32 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
TRIM32 MUTATED 3 2 5
TRIM32 WILD-TYPE 86 158 133
'TRIM32 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.526 (Fisher's exact test), Q value = 0.85

Table S3684.  Gene #335: 'TRIM32 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
TRIM32 MUTATED 5 2 3
TRIM32 WILD-TYPE 177 131 69
'TRIM32 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3685.  Gene #335: 'TRIM32 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
TRIM32 MUTATED 3 2 2 5
TRIM32 WILD-TYPE 109 94 90 181
'TRIM32 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.179 (Fisher's exact test), Q value = 0.48

Table S3686.  Gene #335: 'TRIM32 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
TRIM32 MUTATED 1 1 2 2 0 1 5
TRIM32 WILD-TYPE 59 49 47 38 63 124 94
'TRIM32 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.741 (Fisher's exact test), Q value = 1

Table S3687.  Gene #335: 'TRIM32 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
TRIM32 MUTATED 5 1 1 5
TRIM32 WILD-TYPE 125 77 67 191
'TRIM32 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0319 (Fisher's exact test), Q value = 0.18

Table S3688.  Gene #335: 'TRIM32 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
TRIM32 MUTATED 0 1 2 0 6 1 1 0 1
TRIM32 WILD-TYPE 40 61 26 80 63 47 42 28 73

Figure S1171.  Get High-res Image Gene #335: 'TRIM32 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'TRIM32 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.699 (Fisher's exact test), Q value = 0.97

Table S3689.  Gene #335: 'TRIM32 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
TRIM32 MUTATED 2 1 0 1
TRIM32 WILD-TYPE 31 30 27 18
'TRIM32 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.869 (Fisher's exact test), Q value = 1

Table S3690.  Gene #335: 'TRIM32 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
TRIM32 MUTATED 3 0 1 0
TRIM32 WILD-TYPE 51 10 23 22
'TWISTNB MUTATION STATUS' versus 'CN_CNMF'

P value = 0.605 (Fisher's exact test), Q value = 0.91

Table S3691.  Gene #336: 'TWISTNB MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
TWISTNB MUTATED 4 2 3 0
TWISTNB WILD-TYPE 174 181 98 20
'TWISTNB MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.347 (Fisher's exact test), Q value = 0.67

Table S3692.  Gene #336: 'TWISTNB MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
TWISTNB MUTATED 4 2 1
TWISTNB WILD-TYPE 83 78 99
'TWISTNB MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.794 (Fisher's exact test), Q value = 1

Table S3693.  Gene #336: 'TWISTNB MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
TWISTNB MUTATED 1 4 2
TWISTNB WILD-TYPE 88 156 136
'TWISTNB MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.775 (Fisher's exact test), Q value = 1

Table S3694.  Gene #336: 'TWISTNB MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
TWISTNB MUTATED 3 2 2
TWISTNB WILD-TYPE 179 131 70
'TWISTNB MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.693 (Fisher's exact test), Q value = 0.97

Table S3695.  Gene #336: 'TWISTNB MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
TWISTNB MUTATED 3 2 2 2
TWISTNB WILD-TYPE 109 94 90 184
'TWISTNB MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0644 (Fisher's exact test), Q value = 0.28

Table S3696.  Gene #336: 'TWISTNB MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
TWISTNB MUTATED 2 0 2 1 3 0 1
TWISTNB WILD-TYPE 58 50 47 39 60 125 98
'TWISTNB MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.188 (Fisher's exact test), Q value = 0.49

Table S3697.  Gene #336: 'TWISTNB MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
TWISTNB MUTATED 5 2 0 2
TWISTNB WILD-TYPE 125 76 68 194
'TWISTNB MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.329 (Fisher's exact test), Q value = 0.66

Table S3698.  Gene #336: 'TWISTNB MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
TWISTNB MUTATED 1 2 0 1 4 0 1 0 0
TWISTNB WILD-TYPE 39 60 28 79 65 48 42 28 74
'TWISTNB MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.256 (Fisher's exact test), Q value = 0.58

Table S3699.  Gene #336: 'TWISTNB MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
TWISTNB MUTATED 2 0 0 1
TWISTNB WILD-TYPE 31 31 27 18
'TWISTNB MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S3700.  Gene #336: 'TWISTNB MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
TWISTNB MUTATED 2 0 1 0
TWISTNB WILD-TYPE 52 10 23 22
'PKDREJ MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.152 (Fisher's exact test), Q value = 0.44

Table S3701.  Gene #337: 'PKDREJ MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
PKDREJ MUTATED 3 1 1 4
PKDREJ WILD-TYPE 43 57 63 39
'PKDREJ MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.175 (Fisher's exact test), Q value = 0.47

Table S3702.  Gene #337: 'PKDREJ MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
PKDREJ MUTATED 4 4 1
PKDREJ WILD-TYPE 47 79 76
'PKDREJ MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00879 (Fisher's exact test), Q value = 0.087

Table S3703.  Gene #337: 'PKDREJ MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
PKDREJ MUTATED 23 8 5 0
PKDREJ WILD-TYPE 155 175 96 20

Figure S1172.  Get High-res Image Gene #337: 'PKDREJ MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'PKDREJ MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.364 (Fisher's exact test), Q value = 0.69

Table S3704.  Gene #337: 'PKDREJ MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
PKDREJ MUTATED 10 5 12
PKDREJ WILD-TYPE 77 75 88
'PKDREJ MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0563 (Fisher's exact test), Q value = 0.26

Table S3705.  Gene #337: 'PKDREJ MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
PKDREJ MUTATED 3 10 16
PKDREJ WILD-TYPE 86 150 122
'PKDREJ MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.018 (Fisher's exact test), Q value = 0.13

Table S3706.  Gene #337: 'PKDREJ MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
PKDREJ MUTATED 20 8 1
PKDREJ WILD-TYPE 162 125 71

Figure S1173.  Get High-res Image Gene #337: 'PKDREJ MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'PKDREJ MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00303 (Fisher's exact test), Q value = 0.049

Table S3707.  Gene #337: 'PKDREJ MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
PKDREJ MUTATED 3 10 14 9
PKDREJ WILD-TYPE 109 86 78 177

Figure S1174.  Get High-res Image Gene #337: 'PKDREJ MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'PKDREJ MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00012 (Fisher's exact test), Q value = 0.0059

Table S3708.  Gene #337: 'PKDREJ MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
PKDREJ MUTATED 2 5 13 2 6 3 5
PKDREJ WILD-TYPE 58 45 36 38 57 122 94

Figure S1175.  Get High-res Image Gene #337: 'PKDREJ MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'PKDREJ MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0105 (Fisher's exact test), Q value = 0.098

Table S3709.  Gene #337: 'PKDREJ MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
PKDREJ MUTATED 18 5 3 8
PKDREJ WILD-TYPE 112 73 65 188

Figure S1176.  Get High-res Image Gene #337: 'PKDREJ MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'PKDREJ MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00115 (Fisher's exact test), Q value = 0.027

Table S3710.  Gene #337: 'PKDREJ MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
PKDREJ MUTATED 3 9 4 3 11 0 2 0 2
PKDREJ WILD-TYPE 37 53 24 77 58 48 41 28 72

Figure S1177.  Get High-res Image Gene #337: 'PKDREJ MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'PKDREJ MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.236 (Fisher's exact test), Q value = 0.56

Table S3711.  Gene #337: 'PKDREJ MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
PKDREJ MUTATED 3 1 2 4
PKDREJ WILD-TYPE 30 30 25 15
'PKDREJ MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.205 (Fisher's exact test), Q value = 0.51

Table S3712.  Gene #337: 'PKDREJ MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
PKDREJ MUTATED 6 0 4 0
PKDREJ WILD-TYPE 48 10 20 22
'SYNE1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 9e-05 (Fisher's exact test), Q value = 0.0048

Table S3713.  Gene #338: 'SYNE1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
SYNE1 MUTATED 15 8 5 17
SYNE1 WILD-TYPE 31 50 59 26

Figure S1178.  Get High-res Image Gene #338: 'SYNE1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'SYNE1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 3e-05 (Fisher's exact test), Q value = 0.0022

Table S3714.  Gene #338: 'SYNE1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
SYNE1 MUTATED 23 9 13
SYNE1 WILD-TYPE 28 74 64

Figure S1179.  Get High-res Image Gene #338: 'SYNE1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'SYNE1 MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S3715.  Gene #338: 'SYNE1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
SYNE1 MUTATED 79 33 25 2
SYNE1 WILD-TYPE 99 150 76 18

Figure S1180.  Get High-res Image Gene #338: 'SYNE1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'SYNE1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0665 (Fisher's exact test), Q value = 0.28

Table S3716.  Gene #338: 'SYNE1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
SYNE1 MUTATED 37 21 39
SYNE1 WILD-TYPE 50 59 61
'SYNE1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.753 (Fisher's exact test), Q value = 1

Table S3717.  Gene #338: 'SYNE1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
SYNE1 MUTATED 25 47 45
SYNE1 WILD-TYPE 64 113 93
'SYNE1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.846 (Fisher's exact test), Q value = 1

Table S3718.  Gene #338: 'SYNE1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
SYNE1 MUTATED 56 38 23
SYNE1 WILD-TYPE 126 95 49
'SYNE1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0227 (Fisher's exact test), Q value = 0.15

Table S3719.  Gene #338: 'SYNE1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
SYNE1 MUTATED 31 38 30 42
SYNE1 WILD-TYPE 81 58 62 144

Figure S1181.  Get High-res Image Gene #338: 'SYNE1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'SYNE1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S3720.  Gene #338: 'SYNE1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
SYNE1 MUTATED 18 16 28 10 19 16 34
SYNE1 WILD-TYPE 42 34 21 30 44 109 65

Figure S1182.  Get High-res Image Gene #338: 'SYNE1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'SYNE1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0352 (Fisher's exact test), Q value = 0.19

Table S3721.  Gene #338: 'SYNE1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
SYNE1 MUTATED 47 27 13 51
SYNE1 WILD-TYPE 83 51 55 145

Figure S1183.  Get High-res Image Gene #338: 'SYNE1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'SYNE1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 3e-05 (Fisher's exact test), Q value = 0.0022

Table S3722.  Gene #338: 'SYNE1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
SYNE1 MUTATED 13 22 8 24 34 11 13 7 6
SYNE1 WILD-TYPE 27 40 20 56 35 37 30 21 68

Figure S1184.  Get High-res Image Gene #338: 'SYNE1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'SYNE1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.242 (Fisher's exact test), Q value = 0.57

Table S3723.  Gene #338: 'SYNE1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
SYNE1 MUTATED 8 11 6 9
SYNE1 WILD-TYPE 25 20 21 10
'SYNE1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.453 (Fisher's exact test), Q value = 0.78

Table S3724.  Gene #338: 'SYNE1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
SYNE1 MUTATED 18 1 9 6
SYNE1 WILD-TYPE 36 9 15 16
'WNT16 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0654 (Fisher's exact test), Q value = 0.28

Table S3725.  Gene #339: 'WNT16 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
WNT16 MUTATED 6 0 2 0
WNT16 WILD-TYPE 172 183 99 20
'WNT16 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.444 (Fisher's exact test), Q value = 0.77

Table S3726.  Gene #339: 'WNT16 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
WNT16 MUTATED 4 1 2
WNT16 WILD-TYPE 83 79 98
'WNT16 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.875 (Fisher's exact test), Q value = 1

Table S3727.  Gene #339: 'WNT16 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
WNT16 MUTATED 1 2 3
WNT16 WILD-TYPE 88 158 135
'WNT16 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.859 (Fisher's exact test), Q value = 1

Table S3728.  Gene #339: 'WNT16 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
WNT16 MUTATED 2 3 1
WNT16 WILD-TYPE 180 130 71
'WNT16 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.309 (Fisher's exact test), Q value = 0.64

Table S3729.  Gene #339: 'WNT16 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
WNT16 MUTATED 2 2 3 1
WNT16 WILD-TYPE 110 94 89 185
'WNT16 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00299 (Fisher's exact test), Q value = 0.049

Table S3730.  Gene #339: 'WNT16 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
WNT16 MUTATED 0 2 4 1 0 0 1
WNT16 WILD-TYPE 60 48 45 39 63 125 98

Figure S1185.  Get High-res Image Gene #339: 'WNT16 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'WNT16 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.276 (Fisher's exact test), Q value = 0.6

Table S3731.  Gene #339: 'WNT16 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
WNT16 MUTATED 1 3 0 4
WNT16 WILD-TYPE 129 75 68 192
'WNT16 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.1 (Fisher's exact test), Q value = 0.35

Table S3732.  Gene #339: 'WNT16 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
WNT16 MUTATED 0 3 2 0 2 0 0 0 1
WNT16 WILD-TYPE 40 59 26 80 67 48 43 28 73
'ZNF189 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.371 (Fisher's exact test), Q value = 0.7

Table S3733.  Gene #340: 'ZNF189 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ZNF189 MUTATED 10 4 4 0
ZNF189 WILD-TYPE 168 179 97 20
'ZNF189 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.684 (Fisher's exact test), Q value = 0.96

Table S3734.  Gene #340: 'ZNF189 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ZNF189 MUTATED 7 4 5
ZNF189 WILD-TYPE 80 76 95
'ZNF189 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.094 (Fisher's exact test), Q value = 0.34

Table S3735.  Gene #340: 'ZNF189 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ZNF189 MUTATED 1 7 10
ZNF189 WILD-TYPE 88 153 128
'ZNF189 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.733 (Fisher's exact test), Q value = 1

Table S3736.  Gene #340: 'ZNF189 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ZNF189 MUTATED 10 6 2
ZNF189 WILD-TYPE 172 127 70
'ZNF189 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.236 (Fisher's exact test), Q value = 0.56

Table S3737.  Gene #340: 'ZNF189 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ZNF189 MUTATED 6 3 6 4
ZNF189 WILD-TYPE 106 93 86 182
'ZNF189 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0208 (Fisher's exact test), Q value = 0.15

Table S3738.  Gene #340: 'ZNF189 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ZNF189 MUTATED 5 3 3 0 5 1 2
ZNF189 WILD-TYPE 55 47 46 40 58 124 97

Figure S1186.  Get High-res Image Gene #340: 'ZNF189 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ZNF189 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.179 (Fisher's exact test), Q value = 0.48

Table S3739.  Gene #340: 'ZNF189 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ZNF189 MUTATED 8 5 1 5
ZNF189 WILD-TYPE 122 73 67 191
'ZNF189 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.559 (Fisher's exact test), Q value = 0.87

Table S3740.  Gene #340: 'ZNF189 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ZNF189 MUTATED 3 5 2 2 2 1 1 0 3
ZNF189 WILD-TYPE 37 57 26 78 67 47 42 28 71
'TRRAP MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00303 (Fisher's exact test), Q value = 0.049

Table S3741.  Gene #341: 'TRRAP MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
TRRAP MUTATED 8 0 3 3
TRRAP WILD-TYPE 38 58 61 40

Figure S1187.  Get High-res Image Gene #341: 'TRRAP MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'TRRAP MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0727 (Fisher's exact test), Q value = 0.29

Table S3742.  Gene #341: 'TRRAP MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
TRRAP MUTATED 7 3 4
TRRAP WILD-TYPE 44 80 73
'TRRAP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0357 (Fisher's exact test), Q value = 0.2

Table S3743.  Gene #341: 'TRRAP MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
TRRAP MUTATED 30 15 8 3
TRRAP WILD-TYPE 148 168 93 17

Figure S1188.  Get High-res Image Gene #341: 'TRRAP MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'TRRAP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0225 (Fisher's exact test), Q value = 0.15

Table S3744.  Gene #341: 'TRRAP MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
TRRAP MUTATED 9 8 23
TRRAP WILD-TYPE 78 72 77

Figure S1189.  Get High-res Image Gene #341: 'TRRAP MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'TRRAP MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.279 (Fisher's exact test), Q value = 0.61

Table S3745.  Gene #341: 'TRRAP MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
TRRAP MUTATED 8 18 22
TRRAP WILD-TYPE 81 142 116
'TRRAP MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.632 (Fisher's exact test), Q value = 0.93

Table S3746.  Gene #341: 'TRRAP MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
TRRAP MUTATED 22 19 7
TRRAP WILD-TYPE 160 114 65
'TRRAP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00451 (Fisher's exact test), Q value = 0.061

Table S3747.  Gene #341: 'TRRAP MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
TRRAP MUTATED 5 17 16 19
TRRAP WILD-TYPE 107 79 76 167

Figure S1190.  Get High-res Image Gene #341: 'TRRAP MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'TRRAP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 2e-04 (Fisher's exact test), Q value = 0.0083

Table S3748.  Gene #341: 'TRRAP MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
TRRAP MUTATED 6 9 14 3 6 4 15
TRRAP WILD-TYPE 54 41 35 37 57 121 84

Figure S1191.  Get High-res Image Gene #341: 'TRRAP MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'TRRAP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.276 (Fisher's exact test), Q value = 0.6

Table S3749.  Gene #341: 'TRRAP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
TRRAP MUTATED 20 9 4 23
TRRAP WILD-TYPE 110 69 64 173
'TRRAP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0123 (Fisher's exact test), Q value = 0.11

Table S3750.  Gene #341: 'TRRAP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
TRRAP MUTATED 6 11 4 7 16 2 5 2 3
TRRAP WILD-TYPE 34 51 24 73 53 46 38 26 71

Figure S1192.  Get High-res Image Gene #341: 'TRRAP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'TRRAP MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0421 (Fisher's exact test), Q value = 0.22

Table S3751.  Gene #341: 'TRRAP MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
TRRAP MUTATED 4 1 3 6
TRRAP WILD-TYPE 29 30 24 13

Figure S1193.  Get High-res Image Gene #341: 'TRRAP MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'TRRAP MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.165 (Fisher's exact test), Q value = 0.46

Table S3752.  Gene #341: 'TRRAP MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
TRRAP MUTATED 9 1 4 0
TRRAP WILD-TYPE 45 9 20 22
'C14ORF43 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.255 (Fisher's exact test), Q value = 0.58

Table S3753.  Gene #342: 'C14ORF43 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
C14ORF43 MUTATED 2 0 1 2
C14ORF43 WILD-TYPE 44 58 63 41
'C14ORF43 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.019 (Fisher's exact test), Q value = 0.14

Table S3754.  Gene #342: 'C14ORF43 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
C14ORF43 MUTATED 4 1 0
C14ORF43 WILD-TYPE 47 82 77

Figure S1194.  Get High-res Image Gene #342: 'C14ORF43 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'C14ORF43 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00029 (Fisher's exact test), Q value = 0.011

Table S3755.  Gene #342: 'C14ORF43 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
C14ORF43 MUTATED 17 2 1 0
C14ORF43 WILD-TYPE 161 181 100 20

Figure S1195.  Get High-res Image Gene #342: 'C14ORF43 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'C14ORF43 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.068 (Fisher's exact test), Q value = 0.28

Table S3756.  Gene #342: 'C14ORF43 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
C14ORF43 MUTATED 6 1 9
C14ORF43 WILD-TYPE 81 79 91
'C14ORF43 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.235 (Fisher's exact test), Q value = 0.56

Table S3757.  Gene #342: 'C14ORF43 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
C14ORF43 MUTATED 3 5 10
C14ORF43 WILD-TYPE 86 155 128
'C14ORF43 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.132 (Fisher's exact test), Q value = 0.41

Table S3758.  Gene #342: 'C14ORF43 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
C14ORF43 MUTATED 9 3 6
C14ORF43 WILD-TYPE 173 130 66
'C14ORF43 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0215 (Fisher's exact test), Q value = 0.15

Table S3759.  Gene #342: 'C14ORF43 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
C14ORF43 MUTATED 1 7 7 5
C14ORF43 WILD-TYPE 111 89 85 181

Figure S1196.  Get High-res Image Gene #342: 'C14ORF43 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'C14ORF43 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S3760.  Gene #342: 'C14ORF43 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
C14ORF43 MUTATED 0 0 11 2 2 1 4
C14ORF43 WILD-TYPE 60 50 38 38 61 124 95

Figure S1197.  Get High-res Image Gene #342: 'C14ORF43 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'C14ORF43 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.161 (Fisher's exact test), Q value = 0.45

Table S3761.  Gene #342: 'C14ORF43 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
C14ORF43 MUTATED 10 3 1 6
C14ORF43 WILD-TYPE 120 75 67 190
'C14ORF43 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00644 (Fisher's exact test), Q value = 0.074

Table S3762.  Gene #342: 'C14ORF43 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
C14ORF43 MUTATED 2 5 1 1 9 0 1 0 1
C14ORF43 WILD-TYPE 38 57 27 79 60 48 42 28 73

Figure S1198.  Get High-res Image Gene #342: 'C14ORF43 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'C14ORF43 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 2e-05 (Fisher's exact test), Q value = 0.0017

Table S3763.  Gene #342: 'C14ORF43 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
C14ORF43 MUTATED 1 0 0 7
C14ORF43 WILD-TYPE 32 31 27 12

Figure S1199.  Get High-res Image Gene #342: 'C14ORF43 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'C14ORF43 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.163 (Fisher's exact test), Q value = 0.46

Table S3764.  Gene #342: 'C14ORF43 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
C14ORF43 MUTATED 4 0 4 0
C14ORF43 WILD-TYPE 50 10 20 22
'LHCGR MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.374 (Fisher's exact test), Q value = 0.7

Table S3765.  Gene #343: 'LHCGR MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
LHCGR MUTATED 2 1 0 1
LHCGR WILD-TYPE 44 57 64 42
'LHCGR MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S3766.  Gene #343: 'LHCGR MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
LHCGR MUTATED 1 2 1
LHCGR WILD-TYPE 50 81 76
'LHCGR MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0468 (Fisher's exact test), Q value = 0.23

Table S3767.  Gene #343: 'LHCGR MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
LHCGR MUTATED 13 3 6 1
LHCGR WILD-TYPE 165 180 95 19

Figure S1200.  Get High-res Image Gene #343: 'LHCGR MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'LHCGR MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.199 (Fisher's exact test), Q value = 0.5

Table S3768.  Gene #343: 'LHCGR MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
LHCGR MUTATED 6 3 11
LHCGR WILD-TYPE 81 77 89
'LHCGR MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.88 (Fisher's exact test), Q value = 1

Table S3769.  Gene #343: 'LHCGR MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
LHCGR MUTATED 4 10 7
LHCGR WILD-TYPE 85 150 131
'LHCGR MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.956 (Fisher's exact test), Q value = 1

Table S3770.  Gene #343: 'LHCGR MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
LHCGR MUTATED 10 8 3
LHCGR WILD-TYPE 172 125 69
'LHCGR MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0169 (Fisher's exact test), Q value = 0.13

Table S3771.  Gene #343: 'LHCGR MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
LHCGR MUTATED 6 6 9 3
LHCGR WILD-TYPE 106 90 83 183

Figure S1201.  Get High-res Image Gene #343: 'LHCGR MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'LHCGR MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0193 (Fisher's exact test), Q value = 0.14

Table S3772.  Gene #343: 'LHCGR MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
LHCGR MUTATED 5 6 4 0 4 2 3
LHCGR WILD-TYPE 55 44 45 40 59 123 96

Figure S1202.  Get High-res Image Gene #343: 'LHCGR MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'LHCGR MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00222 (Fisher's exact test), Q value = 0.04

Table S3773.  Gene #343: 'LHCGR MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
LHCGR MUTATED 11 8 0 5
LHCGR WILD-TYPE 119 70 68 191

Figure S1203.  Get High-res Image Gene #343: 'LHCGR MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'LHCGR MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.518 (Fisher's exact test), Q value = 0.84

Table S3774.  Gene #343: 'LHCGR MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
LHCGR MUTATED 4 3 0 5 3 3 1 3 2
LHCGR WILD-TYPE 36 59 28 75 66 45 42 25 72
'LHCGR MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.33 (Fisher's exact test), Q value = 0.66

Table S3775.  Gene #343: 'LHCGR MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
LHCGR MUTATED 1 2 1 3
LHCGR WILD-TYPE 32 29 26 16
'LHCGR MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.548 (Fisher's exact test), Q value = 0.87

Table S3776.  Gene #343: 'LHCGR MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
LHCGR MUTATED 5 0 2 0
LHCGR WILD-TYPE 49 10 22 22
'ZC3H13 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00011 (Fisher's exact test), Q value = 0.0056

Table S3777.  Gene #344: 'ZC3H13 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ZC3H13 MUTATED 6 1 2 11
ZC3H13 WILD-TYPE 40 57 62 32

Figure S1204.  Get High-res Image Gene #344: 'ZC3H13 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'ZC3H13 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00011 (Fisher's exact test), Q value = 0.0056

Table S3778.  Gene #344: 'ZC3H13 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ZC3H13 MUTATED 13 2 5
ZC3H13 WILD-TYPE 38 81 72

Figure S1205.  Get High-res Image Gene #344: 'ZC3H13 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'ZC3H13 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0012 (Fisher's exact test), Q value = 0.028

Table S3779.  Gene #344: 'ZC3H13 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ZC3H13 MUTATED 26 7 6 0
ZC3H13 WILD-TYPE 152 176 95 20

Figure S1206.  Get High-res Image Gene #344: 'ZC3H13 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ZC3H13 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.917 (Fisher's exact test), Q value = 1

Table S3780.  Gene #344: 'ZC3H13 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ZC3H13 MUTATED 7 5 8
ZC3H13 WILD-TYPE 80 75 92
'ZC3H13 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.157 (Fisher's exact test), Q value = 0.45

Table S3781.  Gene #344: 'ZC3H13 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ZC3H13 MUTATED 6 10 17
ZC3H13 WILD-TYPE 83 150 121
'ZC3H13 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.564 (Fisher's exact test), Q value = 0.87

Table S3782.  Gene #344: 'ZC3H13 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ZC3H13 MUTATED 18 11 4
ZC3H13 WILD-TYPE 164 122 68
'ZC3H13 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.155 (Fisher's exact test), Q value = 0.44

Table S3783.  Gene #344: 'ZC3H13 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ZC3H13 MUTATED 5 10 5 20
ZC3H13 WILD-TYPE 107 86 87 166
'ZC3H13 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00095 (Fisher's exact test), Q value = 0.024

Table S3784.  Gene #344: 'ZC3H13 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ZC3H13 MUTATED 3 4 6 1 3 4 19
ZC3H13 WILD-TYPE 57 46 43 39 60 121 80

Figure S1207.  Get High-res Image Gene #344: 'ZC3H13 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ZC3H13 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.281 (Fisher's exact test), Q value = 0.61

Table S3785.  Gene #344: 'ZC3H13 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ZC3H13 MUTATED 7 4 5 21
ZC3H13 WILD-TYPE 123 74 63 175
'ZC3H13 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00683 (Fisher's exact test), Q value = 0.076

Table S3786.  Gene #344: 'ZC3H13 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ZC3H13 MUTATED 2 5 4 2 14 1 3 2 4
ZC3H13 WILD-TYPE 38 57 24 78 55 47 40 26 70

Figure S1208.  Get High-res Image Gene #344: 'ZC3H13 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'ZC3H13 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.736 (Fisher's exact test), Q value = 1

Table S3787.  Gene #344: 'ZC3H13 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
ZC3H13 MUTATED 1 2 2 2
ZC3H13 WILD-TYPE 32 29 25 17
'ZC3H13 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.683 (Fisher's exact test), Q value = 0.96

Table S3788.  Gene #344: 'ZC3H13 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
ZC3H13 MUTATED 3 1 1 2
ZC3H13 WILD-TYPE 51 9 23 20
'PRKCH MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.786 (Fisher's exact test), Q value = 1

Table S3789.  Gene #345: 'PRKCH MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
PRKCH MUTATED 1 0 1 1
PRKCH WILD-TYPE 45 58 63 42
'PRKCH MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.622 (Fisher's exact test), Q value = 0.92

Table S3790.  Gene #345: 'PRKCH MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
PRKCH MUTATED 0 1 2
PRKCH WILD-TYPE 51 82 75
'PRKCH MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0928 (Fisher's exact test), Q value = 0.33

Table S3791.  Gene #345: 'PRKCH MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
PRKCH MUTATED 10 3 1 0
PRKCH WILD-TYPE 168 180 100 20
'PRKCH MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.313 (Fisher's exact test), Q value = 0.64

Table S3792.  Gene #345: 'PRKCH MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
PRKCH MUTATED 5 1 5
PRKCH WILD-TYPE 82 79 95
'PRKCH MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.452 (Fisher's exact test), Q value = 0.78

Table S3793.  Gene #345: 'PRKCH MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
PRKCH MUTATED 1 7 5
PRKCH WILD-TYPE 88 153 133
'PRKCH MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.568 (Fisher's exact test), Q value = 0.88

Table S3794.  Gene #345: 'PRKCH MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
PRKCH MUTATED 6 6 1
PRKCH WILD-TYPE 176 127 71
'PRKCH MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.42 (Fisher's exact test), Q value = 0.75

Table S3795.  Gene #345: 'PRKCH MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
PRKCH MUTATED 3 4 4 3
PRKCH WILD-TYPE 109 92 88 183
'PRKCH MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0109 (Fisher's exact test), Q value = 0.1

Table S3796.  Gene #345: 'PRKCH MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
PRKCH MUTATED 3 1 5 0 3 2 0
PRKCH WILD-TYPE 57 49 44 40 60 123 99

Figure S1209.  Get High-res Image Gene #345: 'PRKCH MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'PRKCH MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.131 (Fisher's exact test), Q value = 0.4

Table S3797.  Gene #345: 'PRKCH MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
PRKCH MUTATED 6 4 0 4
PRKCH WILD-TYPE 124 74 68 192
'PRKCH MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.364 (Fisher's exact test), Q value = 0.69

Table S3798.  Gene #345: 'PRKCH MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
PRKCH MUTATED 1 4 2 2 2 2 1 0 0
PRKCH WILD-TYPE 39 58 26 78 67 46 42 28 74
'PRKCH MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0667 (Fisher's exact test), Q value = 0.28

Table S3799.  Gene #345: 'PRKCH MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
PRKCH MUTATED 0 2 0 2
PRKCH WILD-TYPE 33 29 27 17
'PRKCH MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S3800.  Gene #345: 'PRKCH MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
PRKCH MUTATED 2 0 1 1
PRKCH WILD-TYPE 52 10 23 21
'FNDC7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.11 (Fisher's exact test), Q value = 0.37

Table S3801.  Gene #346: 'FNDC7 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
FNDC7 MUTATED 7 2 0 0
FNDC7 WILD-TYPE 171 181 101 20
'FNDC7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.605 (Fisher's exact test), Q value = 0.91

Table S3802.  Gene #346: 'FNDC7 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
FNDC7 MUTATED 3 1 4
FNDC7 WILD-TYPE 84 79 96
'FNDC7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.14 (Fisher's exact test), Q value = 0.42

Table S3803.  Gene #346: 'FNDC7 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
FNDC7 MUTATED 0 2 5
FNDC7 WILD-TYPE 89 158 133
'FNDC7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.885 (Fisher's exact test), Q value = 1

Table S3804.  Gene #346: 'FNDC7 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
FNDC7 MUTATED 3 3 1
FNDC7 WILD-TYPE 179 130 71
'FNDC7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.162 (Fisher's exact test), Q value = 0.46

Table S3805.  Gene #346: 'FNDC7 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
FNDC7 MUTATED 2 4 2 1
FNDC7 WILD-TYPE 110 92 90 185
'FNDC7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0233 (Fisher's exact test), Q value = 0.16

Table S3806.  Gene #346: 'FNDC7 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
FNDC7 MUTATED 1 3 3 0 1 0 1
FNDC7 WILD-TYPE 59 47 46 40 62 125 98

Figure S1210.  Get High-res Image Gene #346: 'FNDC7 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'FNDC7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0832 (Fisher's exact test), Q value = 0.31

Table S3807.  Gene #346: 'FNDC7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
FNDC7 MUTATED 6 1 0 2
FNDC7 WILD-TYPE 124 77 68 194
'FNDC7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.867 (Fisher's exact test), Q value = 1

Table S3808.  Gene #346: 'FNDC7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
FNDC7 MUTATED 1 2 0 3 2 0 0 0 1
FNDC7 WILD-TYPE 39 60 28 77 67 48 43 28 73
'ZNF438 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0649 (Fisher's exact test), Q value = 0.28

Table S3809.  Gene #347: 'ZNF438 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ZNF438 MUTATED 1 0 0 2
ZNF438 WILD-TYPE 45 58 64 41
'ZNF438 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.183 (Fisher's exact test), Q value = 0.48

Table S3810.  Gene #347: 'ZNF438 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ZNF438 MUTATED 2 0 1
ZNF438 WILD-TYPE 49 83 76
'ZNF438 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.237 (Fisher's exact test), Q value = 0.56

Table S3811.  Gene #347: 'ZNF438 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ZNF438 MUTATED 7 2 3 1
ZNF438 WILD-TYPE 171 181 98 19
'ZNF438 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.789 (Fisher's exact test), Q value = 1

Table S3812.  Gene #347: 'ZNF438 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ZNF438 MUTATED 3 4 3
ZNF438 WILD-TYPE 84 76 97
'ZNF438 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.199 (Fisher's exact test), Q value = 0.5

Table S3813.  Gene #347: 'ZNF438 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ZNF438 MUTATED 1 3 7
ZNF438 WILD-TYPE 88 157 131
'ZNF438 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0496 (Fisher's exact test), Q value = 0.24

Table S3814.  Gene #347: 'ZNF438 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ZNF438 MUTATED 9 2 0
ZNF438 WILD-TYPE 173 131 72

Figure S1211.  Get High-res Image Gene #347: 'ZNF438 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'ZNF438 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.632 (Fisher's exact test), Q value = 0.93

Table S3815.  Gene #347: 'ZNF438 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ZNF438 MUTATED 2 3 4 4
ZNF438 WILD-TYPE 110 93 88 182
'ZNF438 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.42 (Fisher's exact test), Q value = 0.75

Table S3816.  Gene #347: 'ZNF438 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ZNF438 MUTATED 2 2 3 1 2 1 2
ZNF438 WILD-TYPE 58 48 46 39 61 124 97
'ZNF438 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.772 (Fisher's exact test), Q value = 1

Table S3817.  Gene #347: 'ZNF438 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ZNF438 MUTATED 4 3 1 4
ZNF438 WILD-TYPE 126 75 67 192
'ZNF438 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0524 (Fisher's exact test), Q value = 0.25

Table S3818.  Gene #347: 'ZNF438 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ZNF438 MUTATED 1 3 2 0 4 1 0 1 0
ZNF438 WILD-TYPE 39 59 26 80 65 47 43 27 74
'NRAS MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0403 (Fisher's exact test), Q value = 0.21

Table S3819.  Gene #348: 'NRAS MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
NRAS MUTATED 0 8 6 5
NRAS WILD-TYPE 46 50 58 38

Figure S1212.  Get High-res Image Gene #348: 'NRAS MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'NRAS MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.136 (Fisher's exact test), Q value = 0.41

Table S3820.  Gene #348: 'NRAS MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
NRAS MUTATED 2 6 11
NRAS WILD-TYPE 49 77 66
'NRAS MUTATION STATUS' versus 'CN_CNMF'

P value = 0.175 (Fisher's exact test), Q value = 0.47

Table S3821.  Gene #348: 'NRAS MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
NRAS MUTATED 15 23 5 1
NRAS WILD-TYPE 163 160 96 19
'NRAS MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.963 (Fisher's exact test), Q value = 1

Table S3822.  Gene #348: 'NRAS MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
NRAS MUTATED 7 8 9
NRAS WILD-TYPE 80 72 91
'NRAS MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.614 (Fisher's exact test), Q value = 0.91

Table S3823.  Gene #348: 'NRAS MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
NRAS MUTATED 6 17 14
NRAS WILD-TYPE 83 143 124
'NRAS MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.723 (Fisher's exact test), Q value = 0.99

Table S3824.  Gene #348: 'NRAS MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
NRAS MUTATED 16 15 6
NRAS WILD-TYPE 166 118 66
'NRAS MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.787 (Fisher's exact test), Q value = 1

Table S3825.  Gene #348: 'NRAS MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
NRAS MUTATED 11 10 6 16
NRAS WILD-TYPE 101 86 86 170
'NRAS MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.487 (Fisher's exact test), Q value = 0.81

Table S3826.  Gene #348: 'NRAS MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
NRAS MUTATED 7 6 1 5 5 11 8
NRAS WILD-TYPE 53 44 48 35 58 114 91
'NRAS MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.2 (Fisher's exact test), Q value = 0.5

Table S3827.  Gene #348: 'NRAS MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
NRAS MUTATED 17 5 7 13
NRAS WILD-TYPE 113 73 61 183
'NRAS MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.725 (Fisher's exact test), Q value = 0.99

Table S3828.  Gene #348: 'NRAS MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
NRAS MUTATED 3 5 3 5 4 6 6 4 6
NRAS WILD-TYPE 37 57 25 75 65 42 37 24 68
'NRAS MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.96 (Fisher's exact test), Q value = 1

Table S3829.  Gene #348: 'NRAS MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
NRAS MUTATED 2 3 2 1
NRAS WILD-TYPE 31 28 25 18
'NRAS MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.514 (Fisher's exact test), Q value = 0.84

Table S3830.  Gene #348: 'NRAS MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
NRAS MUTATED 3 1 1 3
NRAS WILD-TYPE 51 9 23 19
'HIST1H1E MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0932 (Fisher's exact test), Q value = 0.33

Table S3831.  Gene #349: 'HIST1H1E MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
HIST1H1E MUTATED 5 0 1 0
HIST1H1E WILD-TYPE 173 183 100 20
'HIST1H1E MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0669 (Fisher's exact test), Q value = 0.28

Table S3832.  Gene #349: 'HIST1H1E MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
HIST1H1E MUTATED 1 0 5
HIST1H1E WILD-TYPE 86 80 95
'HIST1H1E MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.386 (Fisher's exact test), Q value = 0.71

Table S3833.  Gene #349: 'HIST1H1E MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
HIST1H1E MUTATED 0 4 2
HIST1H1E WILD-TYPE 89 156 136
'HIST1H1E MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.578 (Fisher's exact test), Q value = 0.88

Table S3834.  Gene #349: 'HIST1H1E MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
HIST1H1E MUTATED 3 3 0
HIST1H1E WILD-TYPE 179 130 72
'HIST1H1E MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00561 (Fisher's exact test), Q value = 0.068

Table S3835.  Gene #349: 'HIST1H1E MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
HIST1H1E MUTATED 0 4 2 0
HIST1H1E WILD-TYPE 112 92 90 186

Figure S1213.  Get High-res Image Gene #349: 'HIST1H1E MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'HIST1H1E MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0217 (Fisher's exact test), Q value = 0.15

Table S3836.  Gene #349: 'HIST1H1E MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
HIST1H1E MUTATED 0 0 3 0 2 0 1
HIST1H1E WILD-TYPE 60 50 46 40 61 125 98

Figure S1214.  Get High-res Image Gene #349: 'HIST1H1E MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'HIST1H1E MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.184 (Fisher's exact test), Q value = 0.48

Table S3837.  Gene #349: 'HIST1H1E MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
HIST1H1E MUTATED 4 1 0 1
HIST1H1E WILD-TYPE 126 77 68 195
'HIST1H1E MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.234 (Fisher's exact test), Q value = 0.56

Table S3838.  Gene #349: 'HIST1H1E MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
HIST1H1E MUTATED 1 2 1 0 2 0 0 0 0
HIST1H1E WILD-TYPE 39 60 27 80 67 48 43 28 74
'ZAK MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0751 (Fisher's exact test), Q value = 0.29

Table S3839.  Gene #350: 'ZAK MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ZAK MUTATED 2 0 0 2
ZAK WILD-TYPE 44 58 64 41
'ZAK MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.556 (Fisher's exact test), Q value = 0.87

Table S3840.  Gene #350: 'ZAK MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ZAK MUTATED 2 1 1
ZAK WILD-TYPE 49 82 76
'ZAK MUTATION STATUS' versus 'CN_CNMF'

P value = 0.233 (Fisher's exact test), Q value = 0.55

Table S3841.  Gene #350: 'ZAK MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ZAK MUTATED 6 1 2 0
ZAK WILD-TYPE 172 182 99 20
'ZAK MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.382 (Fisher's exact test), Q value = 0.71

Table S3842.  Gene #350: 'ZAK MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ZAK MUTATED 2 0 3
ZAK WILD-TYPE 85 80 97
'ZAK MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.902 (Fisher's exact test), Q value = 1

Table S3843.  Gene #350: 'ZAK MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ZAK MUTATED 1 4 3
ZAK WILD-TYPE 88 156 135
'ZAK MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.221 (Fisher's exact test), Q value = 0.54

Table S3844.  Gene #350: 'ZAK MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ZAK MUTATED 2 3 3
ZAK WILD-TYPE 180 130 69
'ZAK MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.32 (Fisher's exact test), Q value = 0.65

Table S3845.  Gene #350: 'ZAK MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ZAK MUTATED 0 3 2 4
ZAK WILD-TYPE 112 93 90 182
'ZAK MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0996 (Fisher's exact test), Q value = 0.35

Table S3846.  Gene #350: 'ZAK MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ZAK MUTATED 1 3 0 1 1 0 3
ZAK WILD-TYPE 59 47 49 39 62 125 96
'ZAK MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.755 (Fisher's exact test), Q value = 1

Table S3847.  Gene #350: 'ZAK MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ZAK MUTATED 3 2 0 4
ZAK WILD-TYPE 127 76 68 192
'ZAK MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.351 (Fisher's exact test), Q value = 0.68

Table S3848.  Gene #350: 'ZAK MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ZAK MUTATED 2 1 1 1 3 0 1 0 0
ZAK WILD-TYPE 38 61 27 79 66 48 42 28 74
'SLC24A2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.214 (Fisher's exact test), Q value = 0.52

Table S3849.  Gene #351: 'SLC24A2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
SLC24A2 MUTATED 4 1 1 1
SLC24A2 WILD-TYPE 42 57 63 42
'SLC24A2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.126 (Fisher's exact test), Q value = 0.39

Table S3850.  Gene #351: 'SLC24A2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
SLC24A2 MUTATED 4 2 1
SLC24A2 WILD-TYPE 47 81 76
'SLC24A2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0179 (Fisher's exact test), Q value = 0.13

Table S3851.  Gene #351: 'SLC24A2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
SLC24A2 MUTATED 13 2 4 0
SLC24A2 WILD-TYPE 165 181 97 20

Figure S1215.  Get High-res Image Gene #351: 'SLC24A2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'SLC24A2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.935 (Fisher's exact test), Q value = 1

Table S3852.  Gene #351: 'SLC24A2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
SLC24A2 MUTATED 4 3 5
SLC24A2 WILD-TYPE 83 77 95
'SLC24A2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.515 (Fisher's exact test), Q value = 0.84

Table S3853.  Gene #351: 'SLC24A2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
SLC24A2 MUTATED 4 5 8
SLC24A2 WILD-TYPE 85 155 130
'SLC24A2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.897 (Fisher's exact test), Q value = 1

Table S3854.  Gene #351: 'SLC24A2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
SLC24A2 MUTATED 7 7 3
SLC24A2 WILD-TYPE 175 126 69
'SLC24A2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.826 (Fisher's exact test), Q value = 1

Table S3855.  Gene #351: 'SLC24A2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
SLC24A2 MUTATED 4 4 5 6
SLC24A2 WILD-TYPE 108 92 87 180
'SLC24A2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.158 (Fisher's exact test), Q value = 0.45

Table S3856.  Gene #351: 'SLC24A2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
SLC24A2 MUTATED 2 3 4 1 2 1 6
SLC24A2 WILD-TYPE 58 47 45 39 61 124 93
'SLC24A2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.3 (Fisher's exact test), Q value = 0.63

Table S3857.  Gene #351: 'SLC24A2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
SLC24A2 MUTATED 2 5 3 8
SLC24A2 WILD-TYPE 128 73 65 188
'SLC24A2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.53 (Fisher's exact test), Q value = 0.85

Table S3858.  Gene #351: 'SLC24A2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
SLC24A2 MUTATED 1 4 2 3 4 0 2 1 1
SLC24A2 WILD-TYPE 39 58 26 77 65 48 41 27 73
'SLC24A2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.594 (Fisher's exact test), Q value = 0.9

Table S3859.  Gene #351: 'SLC24A2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
SLC24A2 MUTATED 2 0 1 1
SLC24A2 WILD-TYPE 31 31 26 18
'SLC24A2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.544 (Fisher's exact test), Q value = 0.86

Table S3860.  Gene #351: 'SLC24A2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
SLC24A2 MUTATED 2 0 0 2
SLC24A2 WILD-TYPE 52 10 24 20
'HORMAD1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0323 (Fisher's exact test), Q value = 0.18

Table S3861.  Gene #352: 'HORMAD1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
HORMAD1 MUTATED 9 3 0 1
HORMAD1 WILD-TYPE 169 180 101 19

Figure S1216.  Get High-res Image Gene #352: 'HORMAD1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'HORMAD1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0673 (Fisher's exact test), Q value = 0.28

Table S3862.  Gene #352: 'HORMAD1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
HORMAD1 MUTATED 2 1 8
HORMAD1 WILD-TYPE 85 79 92
'HORMAD1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.539 (Fisher's exact test), Q value = 0.86

Table S3863.  Gene #352: 'HORMAD1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
HORMAD1 MUTATED 1 6 4
HORMAD1 WILD-TYPE 88 154 134
'HORMAD1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.56 (Fisher's exact test), Q value = 0.87

Table S3864.  Gene #352: 'HORMAD1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
HORMAD1 MUTATED 7 3 1
HORMAD1 WILD-TYPE 175 130 71
'HORMAD1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.11 (Fisher's exact test), Q value = 0.37

Table S3865.  Gene #352: 'HORMAD1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
HORMAD1 MUTATED 2 4 5 2
HORMAD1 WILD-TYPE 110 92 87 184
'HORMAD1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0136 (Fisher's exact test), Q value = 0.11

Table S3866.  Gene #352: 'HORMAD1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
HORMAD1 MUTATED 2 2 5 1 1 0 2
HORMAD1 WILD-TYPE 58 48 44 39 62 125 97

Figure S1217.  Get High-res Image Gene #352: 'HORMAD1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'HORMAD1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.146 (Fisher's exact test), Q value = 0.43

Table S3867.  Gene #352: 'HORMAD1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
HORMAD1 MUTATED 6 3 1 2
HORMAD1 WILD-TYPE 124 75 67 194
'HORMAD1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.5 (Fisher's exact test), Q value = 0.83

Table S3868.  Gene #352: 'HORMAD1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
HORMAD1 MUTATED 1 2 1 3 3 0 2 0 0
HORMAD1 WILD-TYPE 39 60 27 77 66 48 41 28 74
'HORMAD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00327 (Fisher's exact test), Q value = 0.051

Table S3869.  Gene #352: 'HORMAD1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
HORMAD1 MUTATED 0 1 2 5
HORMAD1 WILD-TYPE 33 30 25 14

Figure S1218.  Get High-res Image Gene #352: 'HORMAD1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'HORMAD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0533 (Fisher's exact test), Q value = 0.25

Table S3870.  Gene #352: 'HORMAD1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
HORMAD1 MUTATED 3 0 5 0
HORMAD1 WILD-TYPE 51 10 19 22
'BRAF MUTATION STATUS' versus 'MRNA_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S3871.  Gene #353: 'BRAF MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
BRAF MUTATED 16 0 1 6
BRAF WILD-TYPE 30 58 63 37

Figure S1219.  Get High-res Image Gene #353: 'BRAF MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'BRAF MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S3872.  Gene #353: 'BRAF MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
BRAF MUTATED 18 0 5
BRAF WILD-TYPE 33 83 72

Figure S1220.  Get High-res Image Gene #353: 'BRAF MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'BRAF MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S3873.  Gene #353: 'BRAF MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
BRAF MUTATED 67 25 13 3
BRAF WILD-TYPE 111 158 88 17

Figure S1221.  Get High-res Image Gene #353: 'BRAF MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'BRAF MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00044 (Fisher's exact test), Q value = 0.014

Table S3874.  Gene #353: 'BRAF MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
BRAF MUTATED 26 14 45
BRAF WILD-TYPE 61 66 55

Figure S1222.  Get High-res Image Gene #353: 'BRAF MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'BRAF MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0619 (Fisher's exact test), Q value = 0.27

Table S3875.  Gene #353: 'BRAF MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
BRAF MUTATED 20 30 42
BRAF WILD-TYPE 69 130 96
'BRAF MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.256 (Fisher's exact test), Q value = 0.58

Table S3876.  Gene #353: 'BRAF MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
BRAF MUTATED 48 32 12
BRAF WILD-TYPE 134 101 60
'BRAF MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S3877.  Gene #353: 'BRAF MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
BRAF MUTATED 20 33 33 23
BRAF WILD-TYPE 92 63 59 163

Figure S1223.  Get High-res Image Gene #353: 'BRAF MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'BRAF MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S3878.  Gene #353: 'BRAF MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
BRAF MUTATED 10 16 32 11 17 2 21
BRAF WILD-TYPE 50 34 17 29 46 123 78

Figure S1224.  Get High-res Image Gene #353: 'BRAF MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'BRAF MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S3879.  Gene #353: 'BRAF MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
BRAF MUTATED 53 19 7 30
BRAF WILD-TYPE 77 59 61 166

Figure S1225.  Get High-res Image Gene #353: 'BRAF MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'BRAF MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S3880.  Gene #353: 'BRAF MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
BRAF MUTATED 17 22 6 10 32 5 11 5 1
BRAF WILD-TYPE 23 40 22 70 37 43 32 23 73

Figure S1226.  Get High-res Image Gene #353: 'BRAF MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'BRAF MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00377 (Fisher's exact test), Q value = 0.056

Table S3881.  Gene #353: 'BRAF MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
BRAF MUTATED 12 7 2 10
BRAF WILD-TYPE 21 24 25 9

Figure S1227.  Get High-res Image Gene #353: 'BRAF MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'BRAF MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.176 (Fisher's exact test), Q value = 0.48

Table S3882.  Gene #353: 'BRAF MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
BRAF MUTATED 19 4 5 3
BRAF WILD-TYPE 35 6 19 19
'DDX59 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0109 (Fisher's exact test), Q value = 0.1

Table S3883.  Gene #354: 'DDX59 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
DDX59 MUTATED 10 1 1 1
DDX59 WILD-TYPE 168 182 100 19

Figure S1228.  Get High-res Image Gene #354: 'DDX59 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'DDX59 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0391 (Fisher's exact test), Q value = 0.21

Table S3884.  Gene #354: 'DDX59 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
DDX59 MUTATED 6 0 6
DDX59 WILD-TYPE 81 80 94

Figure S1229.  Get High-res Image Gene #354: 'DDX59 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'DDX59 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0449 (Fisher's exact test), Q value = 0.23

Table S3885.  Gene #354: 'DDX59 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
DDX59 MUTATED 1 2 8
DDX59 WILD-TYPE 88 158 130

Figure S1230.  Get High-res Image Gene #354: 'DDX59 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'DDX59 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.56 (Fisher's exact test), Q value = 0.87

Table S3886.  Gene #354: 'DDX59 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
DDX59 MUTATED 7 3 1
DDX59 WILD-TYPE 175 130 71
'DDX59 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.003 (Fisher's exact test), Q value = 0.049

Table S3887.  Gene #354: 'DDX59 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
DDX59 MUTATED 0 6 5 2
DDX59 WILD-TYPE 112 90 87 184

Figure S1231.  Get High-res Image Gene #354: 'DDX59 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'DDX59 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00193 (Fisher's exact test), Q value = 0.037

Table S3888.  Gene #354: 'DDX59 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
DDX59 MUTATED 0 2 6 2 1 1 1
DDX59 WILD-TYPE 60 48 43 38 62 124 98

Figure S1232.  Get High-res Image Gene #354: 'DDX59 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'DDX59 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.631 (Fisher's exact test), Q value = 0.93

Table S3889.  Gene #354: 'DDX59 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
DDX59 MUTATED 5 3 1 4
DDX59 WILD-TYPE 125 75 67 192
'DDX59 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.182 (Fisher's exact test), Q value = 0.48

Table S3890.  Gene #354: 'DDX59 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
DDX59 MUTATED 2 3 0 0 2 0 3 0 3
DDX59 WILD-TYPE 38 59 28 80 67 48 40 28 71
'DDX59 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.629 (Fisher's exact test), Q value = 0.93

Table S3891.  Gene #354: 'DDX59 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
DDX59 MUTATED 0 1 1 1
DDX59 WILD-TYPE 33 30 26 18
'DDX59 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.446 (Fisher's exact test), Q value = 0.77

Table S3892.  Gene #354: 'DDX59 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
DDX59 MUTATED 1 0 2 0
DDX59 WILD-TYPE 53 10 22 22
'NLRP13 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0163 (Fisher's exact test), Q value = 0.13

Table S3893.  Gene #355: 'NLRP13 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
NLRP13 MUTATED 4 1 0 4
NLRP13 WILD-TYPE 42 57 64 39

Figure S1233.  Get High-res Image Gene #355: 'NLRP13 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'NLRP13 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.691 (Fisher's exact test), Q value = 0.97

Table S3894.  Gene #355: 'NLRP13 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
NLRP13 MUTATED 3 4 2
NLRP13 WILD-TYPE 48 79 75
'NLRP13 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0658 (Fisher's exact test), Q value = 0.28

Table S3895.  Gene #355: 'NLRP13 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
NLRP13 MUTATED 17 6 6 2
NLRP13 WILD-TYPE 161 177 95 18
'NLRP13 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.332 (Fisher's exact test), Q value = 0.66

Table S3896.  Gene #355: 'NLRP13 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
NLRP13 MUTATED 10 5 6
NLRP13 WILD-TYPE 77 75 94
'NLRP13 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.221 (Fisher's exact test), Q value = 0.53

Table S3897.  Gene #355: 'NLRP13 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
NLRP13 MUTATED 2 12 9
NLRP13 WILD-TYPE 87 148 129
'NLRP13 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.811 (Fisher's exact test), Q value = 1

Table S3898.  Gene #355: 'NLRP13 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
NLRP13 MUTATED 12 8 3
NLRP13 WILD-TYPE 170 125 69
'NLRP13 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.599 (Fisher's exact test), Q value = 0.9

Table S3899.  Gene #355: 'NLRP13 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
NLRP13 MUTATED 6 8 7 9
NLRP13 WILD-TYPE 106 88 85 177
'NLRP13 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0384 (Fisher's exact test), Q value = 0.21

Table S3900.  Gene #355: 'NLRP13 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
NLRP13 MUTATED 3 5 7 3 3 2 7
NLRP13 WILD-TYPE 57 45 42 37 60 123 92

Figure S1234.  Get High-res Image Gene #355: 'NLRP13 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'NLRP13 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.709 (Fisher's exact test), Q value = 0.98

Table S3901.  Gene #355: 'NLRP13 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
NLRP13 MUTATED 11 5 3 11
NLRP13 WILD-TYPE 119 73 65 185
'NLRP13 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.198 (Fisher's exact test), Q value = 0.5

Table S3902.  Gene #355: 'NLRP13 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
NLRP13 MUTATED 4 6 5 3 5 1 2 1 3
NLRP13 WILD-TYPE 36 56 23 77 64 47 41 27 71
'NLRP13 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.832 (Fisher's exact test), Q value = 1

Table S3903.  Gene #355: 'NLRP13 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
NLRP13 MUTATED 3 1 2 1
NLRP13 WILD-TYPE 30 30 25 18
'NLRP13 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S3904.  Gene #355: 'NLRP13 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
NLRP13 MUTATED 4 0 2 1
NLRP13 WILD-TYPE 50 10 22 21
'MKI67 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S3905.  Gene #356: 'MKI67 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
MKI67 MUTATED 12 0 1 5
MKI67 WILD-TYPE 34 58 63 38

Figure S1235.  Get High-res Image Gene #356: 'MKI67 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'MKI67 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S3906.  Gene #356: 'MKI67 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
MKI67 MUTATED 14 2 2
MKI67 WILD-TYPE 37 81 75

Figure S1236.  Get High-res Image Gene #356: 'MKI67 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'MKI67 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00028 (Fisher's exact test), Q value = 0.01

Table S3907.  Gene #356: 'MKI67 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
MKI67 MUTATED 29 7 7 0
MKI67 WILD-TYPE 149 176 94 20

Figure S1237.  Get High-res Image Gene #356: 'MKI67 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'MKI67 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.282 (Fisher's exact test), Q value = 0.61

Table S3908.  Gene #356: 'MKI67 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
MKI67 MUTATED 12 5 10
MKI67 WILD-TYPE 75 75 90
'MKI67 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.142 (Fisher's exact test), Q value = 0.42

Table S3909.  Gene #356: 'MKI67 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
MKI67 MUTATED 4 14 17
MKI67 WILD-TYPE 85 146 121
'MKI67 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.893 (Fisher's exact test), Q value = 1

Table S3910.  Gene #356: 'MKI67 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
MKI67 MUTATED 18 11 6
MKI67 WILD-TYPE 164 122 66
'MKI67 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.828 (Fisher's exact test), Q value = 1

Table S3911.  Gene #356: 'MKI67 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
MKI67 MUTATED 8 9 10 17
MKI67 WILD-TYPE 104 87 82 169
'MKI67 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 2e-05 (Fisher's exact test), Q value = 0.0017

Table S3912.  Gene #356: 'MKI67 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
MKI67 MUTATED 4 2 10 6 3 2 17
MKI67 WILD-TYPE 56 48 39 34 60 123 82

Figure S1238.  Get High-res Image Gene #356: 'MKI67 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'MKI67 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.487 (Fisher's exact test), Q value = 0.81

Table S3913.  Gene #356: 'MKI67 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
MKI67 MUTATED 13 5 3 19
MKI67 WILD-TYPE 117 73 65 177
'MKI67 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00725 (Fisher's exact test), Q value = 0.079

Table S3914.  Gene #356: 'MKI67 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
MKI67 MUTATED 3 5 3 7 15 3 2 1 1
MKI67 WILD-TYPE 37 57 25 73 54 45 41 27 73

Figure S1239.  Get High-res Image Gene #356: 'MKI67 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'MKI67 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00112 (Fisher's exact test), Q value = 0.026

Table S3915.  Gene #356: 'MKI67 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
MKI67 MUTATED 0 3 1 6
MKI67 WILD-TYPE 33 28 26 13

Figure S1240.  Get High-res Image Gene #356: 'MKI67 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'MKI67 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.499 (Fisher's exact test), Q value = 0.83

Table S3916.  Gene #356: 'MKI67 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
MKI67 MUTATED 4 0 4 2
MKI67 WILD-TYPE 50 10 20 20
'MET MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0226 (Fisher's exact test), Q value = 0.15

Table S3917.  Gene #357: 'MET MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
MET MUTATED 2 0 0 3
MET WILD-TYPE 44 58 64 40

Figure S1241.  Get High-res Image Gene #357: 'MET MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'MET MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.739 (Fisher's exact test), Q value = 1

Table S3918.  Gene #357: 'MET MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
MET MUTATED 2 2 1
MET WILD-TYPE 49 81 76
'MET MUTATION STATUS' versus 'CN_CNMF'

P value = 0.453 (Fisher's exact test), Q value = 0.78

Table S3919.  Gene #357: 'MET MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
MET MUTATED 23 15 9 1
MET WILD-TYPE 155 168 92 19
'MET MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.633 (Fisher's exact test), Q value = 0.93

Table S3920.  Gene #357: 'MET MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
MET MUTATED 12 12 19
MET WILD-TYPE 75 68 81
'MET MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.41 (Fisher's exact test), Q value = 0.74

Table S3921.  Gene #357: 'MET MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
MET MUTATED 6 16 17
MET WILD-TYPE 83 144 121
'MET MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.335 (Fisher's exact test), Q value = 0.66

Table S3922.  Gene #357: 'MET MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
MET MUTATED 22 13 4
MET WILD-TYPE 160 120 68
'MET MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S3923.  Gene #357: 'MET MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
MET MUTATED 19 17 7 6
MET WILD-TYPE 93 79 85 180

Figure S1242.  Get High-res Image Gene #357: 'MET MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'MET MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 2e-05 (Fisher's exact test), Q value = 0.0017

Table S3924.  Gene #357: 'MET MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
MET MUTATED 11 8 10 4 10 2 4
MET WILD-TYPE 49 42 39 36 53 123 95

Figure S1243.  Get High-res Image Gene #357: 'MET MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'MET MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S3925.  Gene #357: 'MET MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
MET MUTATED 26 12 4 6
MET WILD-TYPE 104 66 64 190

Figure S1244.  Get High-res Image Gene #357: 'MET MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'MET MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00361 (Fisher's exact test), Q value = 0.055

Table S3926.  Gene #357: 'MET MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
MET MUTATED 8 9 6 7 6 5 6 0 1
MET WILD-TYPE 32 53 22 73 63 43 37 28 73

Figure S1245.  Get High-res Image Gene #357: 'MET MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'MET MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.15 (Fisher's exact test), Q value = 0.43

Table S3927.  Gene #357: 'MET MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
MET MUTATED 6 8 2 6
MET WILD-TYPE 27 23 25 13
'MET MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.557 (Fisher's exact test), Q value = 0.87

Table S3928.  Gene #357: 'MET MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
MET MUTATED 9 3 4 6
MET WILD-TYPE 45 7 20 16
'PIK3C2A MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.166 (Fisher's exact test), Q value = 0.46

Table S3929.  Gene #358: 'PIK3C2A MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
PIK3C2A MUTATED 3 1 0 1
PIK3C2A WILD-TYPE 43 57 64 42
'PIK3C2A MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.252 (Fisher's exact test), Q value = 0.58

Table S3930.  Gene #358: 'PIK3C2A MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
PIK3C2A MUTATED 3 1 1
PIK3C2A WILD-TYPE 48 82 76
'PIK3C2A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.007 (Fisher's exact test), Q value = 0.077

Table S3931.  Gene #358: 'PIK3C2A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
PIK3C2A MUTATED 16 5 1 0
PIK3C2A WILD-TYPE 162 178 100 20

Figure S1246.  Get High-res Image Gene #358: 'PIK3C2A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'PIK3C2A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.862 (Fisher's exact test), Q value = 1

Table S3932.  Gene #358: 'PIK3C2A MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
PIK3C2A MUTATED 6 4 7
PIK3C2A WILD-TYPE 81 76 93
'PIK3C2A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.506 (Fisher's exact test), Q value = 0.83

Table S3933.  Gene #358: 'PIK3C2A MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
PIK3C2A MUTATED 2 8 8
PIK3C2A WILD-TYPE 87 152 130
'PIK3C2A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.478 (Fisher's exact test), Q value = 0.81

Table S3934.  Gene #358: 'PIK3C2A MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
PIK3C2A MUTATED 11 4 3
PIK3C2A WILD-TYPE 171 129 69
'PIK3C2A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.315 (Fisher's exact test), Q value = 0.64

Table S3935.  Gene #358: 'PIK3C2A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
PIK3C2A MUTATED 5 7 5 5
PIK3C2A WILD-TYPE 107 89 87 181
'PIK3C2A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00519 (Fisher's exact test), Q value = 0.065

Table S3936.  Gene #358: 'PIK3C2A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
PIK3C2A MUTATED 3 4 6 4 1 1 3
PIK3C2A WILD-TYPE 57 46 43 36 62 124 96

Figure S1247.  Get High-res Image Gene #358: 'PIK3C2A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'PIK3C2A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0506 (Fisher's exact test), Q value = 0.24

Table S3937.  Gene #358: 'PIK3C2A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
PIK3C2A MUTATED 12 3 2 5
PIK3C2A WILD-TYPE 118 75 66 191
'PIK3C2A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.607 (Fisher's exact test), Q value = 0.91

Table S3938.  Gene #358: 'PIK3C2A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
PIK3C2A MUTATED 2 3 1 3 7 2 2 1 1
PIK3C2A WILD-TYPE 38 59 27 77 62 46 41 27 73
'PIK3C2A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0908 (Fisher's exact test), Q value = 0.33

Table S3939.  Gene #358: 'PIK3C2A MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
PIK3C2A MUTATED 2 0 1 3
PIK3C2A WILD-TYPE 31 31 26 16
'PIK3C2A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0831 (Fisher's exact test), Q value = 0.31

Table S3940.  Gene #358: 'PIK3C2A MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
PIK3C2A MUTATED 2 0 4 0
PIK3C2A WILD-TYPE 52 10 20 22
'ERBB3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0942 (Fisher's exact test), Q value = 0.34

Table S3941.  Gene #359: 'ERBB3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ERBB3 MUTATED 6 3 1 2
ERBB3 WILD-TYPE 40 55 63 41
'ERBB3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0214 (Fisher's exact test), Q value = 0.15

Table S3942.  Gene #359: 'ERBB3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ERBB3 MUTATED 7 2 3
ERBB3 WILD-TYPE 44 81 74

Figure S1248.  Get High-res Image Gene #359: 'ERBB3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'ERBB3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00214 (Fisher's exact test), Q value = 0.039

Table S3943.  Gene #359: 'ERBB3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ERBB3 MUTATED 19 3 7 1
ERBB3 WILD-TYPE 159 180 94 19

Figure S1249.  Get High-res Image Gene #359: 'ERBB3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ERBB3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0626 (Fisher's exact test), Q value = 0.27

Table S3944.  Gene #359: 'ERBB3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ERBB3 MUTATED 8 1 7
ERBB3 WILD-TYPE 79 79 93
'ERBB3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.496 (Fisher's exact test), Q value = 0.82

Table S3945.  Gene #359: 'ERBB3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ERBB3 MUTATED 7 8 11
ERBB3 WILD-TYPE 82 152 127
'ERBB3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.797 (Fisher's exact test), Q value = 1

Table S3946.  Gene #359: 'ERBB3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ERBB3 MUTATED 12 8 6
ERBB3 WILD-TYPE 170 125 66
'ERBB3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0253 (Fisher's exact test), Q value = 0.16

Table S3947.  Gene #359: 'ERBB3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ERBB3 MUTATED 1 9 6 13
ERBB3 WILD-TYPE 111 87 86 173

Figure S1250.  Get High-res Image Gene #359: 'ERBB3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'ERBB3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0403 (Fisher's exact test), Q value = 0.21

Table S3948.  Gene #359: 'ERBB3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ERBB3 MUTATED 0 2 4 3 5 4 11
ERBB3 WILD-TYPE 60 48 45 37 58 121 88

Figure S1251.  Get High-res Image Gene #359: 'ERBB3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ERBB3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0745 (Fisher's exact test), Q value = 0.29

Table S3949.  Gene #359: 'ERBB3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ERBB3 MUTATED 9 4 0 15
ERBB3 WILD-TYPE 121 74 68 181
'ERBB3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00863 (Fisher's exact test), Q value = 0.087

Table S3950.  Gene #359: 'ERBB3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ERBB3 MUTATED 5 6 3 1 7 4 0 1 1
ERBB3 WILD-TYPE 35 56 25 79 62 44 43 27 73

Figure S1252.  Get High-res Image Gene #359: 'ERBB3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'ERBB3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0389 (Fisher's exact test), Q value = 0.21

Table S3951.  Gene #359: 'ERBB3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
ERBB3 MUTATED 0 3 0 0
ERBB3 WILD-TYPE 33 28 27 19

Figure S1253.  Get High-res Image Gene #359: 'ERBB3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'ERBB3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.563 (Fisher's exact test), Q value = 0.87

Table S3952.  Gene #359: 'ERBB3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
ERBB3 MUTATED 3 0 0 0
ERBB3 WILD-TYPE 51 10 24 22
'CENPF MUTATION STATUS' versus 'MRNA_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S3953.  Gene #360: 'CENPF MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
CENPF MUTATED 6 0 0 9
CENPF WILD-TYPE 40 58 64 34

Figure S1254.  Get High-res Image Gene #360: 'CENPF MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'CENPF MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 2e-05 (Fisher's exact test), Q value = 0.0017

Table S3954.  Gene #360: 'CENPF MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
CENPF MUTATED 11 1 3
CENPF WILD-TYPE 40 82 74

Figure S1255.  Get High-res Image Gene #360: 'CENPF MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'CENPF MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00491 (Fisher's exact test), Q value = 0.063

Table S3955.  Gene #360: 'CENPF MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
CENPF MUTATED 27 8 9 1
CENPF WILD-TYPE 151 175 92 19

Figure S1256.  Get High-res Image Gene #360: 'CENPF MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'CENPF MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.677 (Fisher's exact test), Q value = 0.96

Table S3956.  Gene #360: 'CENPF MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
CENPF MUTATED 9 8 14
CENPF WILD-TYPE 78 72 86
'CENPF MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0123 (Fisher's exact test), Q value = 0.11

Table S3957.  Gene #360: 'CENPF MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
CENPF MUTATED 3 16 21
CENPF WILD-TYPE 86 144 117

Figure S1257.  Get High-res Image Gene #360: 'CENPF MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'CENPF MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00919 (Fisher's exact test), Q value = 0.09

Table S3958.  Gene #360: 'CENPF MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
CENPF MUTATED 27 11 2
CENPF WILD-TYPE 155 122 70

Figure S1258.  Get High-res Image Gene #360: 'CENPF MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'CENPF MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.229 (Fisher's exact test), Q value = 0.55

Table S3959.  Gene #360: 'CENPF MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
CENPF MUTATED 7 14 9 16
CENPF WILD-TYPE 105 82 83 170
'CENPF MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 8e-05 (Fisher's exact test), Q value = 0.0045

Table S3960.  Gene #360: 'CENPF MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
CENPF MUTATED 4 8 9 4 5 1 15
CENPF WILD-TYPE 56 42 40 36 58 124 84

Figure S1259.  Get High-res Image Gene #360: 'CENPF MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CENPF MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.136 (Fisher's exact test), Q value = 0.41

Table S3961.  Gene #360: 'CENPF MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
CENPF MUTATED 18 7 3 15
CENPF WILD-TYPE 112 71 65 181
'CENPF MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00055 (Fisher's exact test), Q value = 0.016

Table S3962.  Gene #360: 'CENPF MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
CENPF MUTATED 3 10 5 4 13 0 5 0 3
CENPF WILD-TYPE 37 52 23 76 56 48 38 28 71

Figure S1260.  Get High-res Image Gene #360: 'CENPF MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'CENPF MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.283 (Fisher's exact test), Q value = 0.61

Table S3963.  Gene #360: 'CENPF MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
CENPF MUTATED 3 4 0 1
CENPF WILD-TYPE 30 27 27 18
'CENPF MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.337 (Fisher's exact test), Q value = 0.66

Table S3964.  Gene #360: 'CENPF MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
CENPF MUTATED 3 2 1 2
CENPF WILD-TYPE 51 8 23 20
'TXNDC15 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0649 (Fisher's exact test), Q value = 0.28

Table S3965.  Gene #361: 'TXNDC15 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
TXNDC15 MUTATED 1 0 0 2
TXNDC15 WILD-TYPE 45 58 64 41
'TXNDC15 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.184 (Fisher's exact test), Q value = 0.48

Table S3966.  Gene #361: 'TXNDC15 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
TXNDC15 MUTATED 2 0 1
TXNDC15 WILD-TYPE 49 83 76
'TXNDC15 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.514 (Fisher's exact test), Q value = 0.84

Table S3967.  Gene #361: 'TXNDC15 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
TXNDC15 MUTATED 4 1 2 0
TXNDC15 WILD-TYPE 174 182 99 20
'TXNDC15 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3968.  Gene #361: 'TXNDC15 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
TXNDC15 MUTATED 1 1 2
TXNDC15 WILD-TYPE 86 79 98
'TXNDC15 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.239 (Fisher's exact test), Q value = 0.56

Table S3969.  Gene #361: 'TXNDC15 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
TXNDC15 MUTATED 0 2 4
TXNDC15 WILD-TYPE 89 158 134
'TXNDC15 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.665 (Fisher's exact test), Q value = 0.95

Table S3970.  Gene #361: 'TXNDC15 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
TXNDC15 MUTATED 4 2 0
TXNDC15 WILD-TYPE 178 131 72
'TXNDC15 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.549 (Fisher's exact test), Q value = 0.87

Table S3971.  Gene #361: 'TXNDC15 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
TXNDC15 MUTATED 3 1 0 3
TXNDC15 WILD-TYPE 109 95 92 183
'TXNDC15 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0457 (Fisher's exact test), Q value = 0.23

Table S3972.  Gene #361: 'TXNDC15 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
TXNDC15 MUTATED 3 0 0 1 0 0 3
TXNDC15 WILD-TYPE 57 50 49 39 63 125 96

Figure S1261.  Get High-res Image Gene #361: 'TXNDC15 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'TXNDC15 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.885 (Fisher's exact test), Q value = 1

Table S3973.  Gene #361: 'TXNDC15 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
TXNDC15 MUTATED 2 1 0 3
TXNDC15 WILD-TYPE 128 77 68 193
'TXNDC15 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.324 (Fisher's exact test), Q value = 0.65

Table S3974.  Gene #361: 'TXNDC15 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
TXNDC15 MUTATED 1 0 0 2 3 0 0 0 0
TXNDC15 WILD-TYPE 39 62 28 78 66 48 43 28 74
'TSHR MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.114 (Fisher's exact test), Q value = 0.37

Table S3975.  Gene #362: 'TSHR MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
TSHR MUTATED 2 0 1 3
TSHR WILD-TYPE 44 58 63 40
'TSHR MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0708 (Fisher's exact test), Q value = 0.29

Table S3976.  Gene #362: 'TSHR MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
TSHR MUTATED 4 1 1
TSHR WILD-TYPE 47 82 76
'TSHR MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0422 (Fisher's exact test), Q value = 0.22

Table S3977.  Gene #362: 'TSHR MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
TSHR MUTATED 26 13 8 0
TSHR WILD-TYPE 152 170 93 20

Figure S1262.  Get High-res Image Gene #362: 'TSHR MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'TSHR MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.932 (Fisher's exact test), Q value = 1

Table S3978.  Gene #362: 'TSHR MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
TSHR MUTATED 12 12 16
TSHR WILD-TYPE 75 68 84
'TSHR MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0781 (Fisher's exact test), Q value = 0.3

Table S3979.  Gene #362: 'TSHR MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
TSHR MUTATED 6 12 20
TSHR WILD-TYPE 83 148 118
'TSHR MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.559 (Fisher's exact test), Q value = 0.87

Table S3980.  Gene #362: 'TSHR MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
TSHR MUTATED 21 12 5
TSHR WILD-TYPE 161 121 67
'TSHR MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00049 (Fisher's exact test), Q value = 0.015

Table S3981.  Gene #362: 'TSHR MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
TSHR MUTATED 17 13 12 6
TSHR WILD-TYPE 95 83 80 180

Figure S1263.  Get High-res Image Gene #362: 'TSHR MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'TSHR MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S3982.  Gene #362: 'TSHR MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
TSHR MUTATED 11 11 9 3 8 0 6
TSHR WILD-TYPE 49 39 40 37 55 125 93

Figure S1264.  Get High-res Image Gene #362: 'TSHR MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'TSHR MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00382 (Fisher's exact test), Q value = 0.056

Table S3983.  Gene #362: 'TSHR MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
TSHR MUTATED 22 10 5 10
TSHR WILD-TYPE 108 68 63 186

Figure S1265.  Get High-res Image Gene #362: 'TSHR MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'TSHR MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0624 (Fisher's exact test), Q value = 0.27

Table S3984.  Gene #362: 'TSHR MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
TSHR MUTATED 5 10 5 8 8 3 5 2 1
TSHR WILD-TYPE 35 52 23 72 61 45 38 26 73
'TSHR MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.445 (Fisher's exact test), Q value = 0.77

Table S3985.  Gene #362: 'TSHR MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
TSHR MUTATED 6 3 2 4
TSHR WILD-TYPE 27 28 25 15
'TSHR MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.711 (Fisher's exact test), Q value = 0.98

Table S3986.  Gene #362: 'TSHR MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
TSHR MUTATED 8 0 4 3
TSHR WILD-TYPE 46 10 20 19
'KIAA1012 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0538 (Fisher's exact test), Q value = 0.25

Table S3987.  Gene #363: 'KIAA1012 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
KIAA1012 MUTATED 4 0 1 2
KIAA1012 WILD-TYPE 42 58 63 41
'KIAA1012 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.106 (Fisher's exact test), Q value = 0.36

Table S3988.  Gene #363: 'KIAA1012 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
KIAA1012 MUTATED 4 1 2
KIAA1012 WILD-TYPE 47 82 75
'KIAA1012 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00238 (Fisher's exact test), Q value = 0.042

Table S3989.  Gene #363: 'KIAA1012 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
KIAA1012 MUTATED 15 5 1 3
KIAA1012 WILD-TYPE 163 178 100 17

Figure S1266.  Get High-res Image Gene #363: 'KIAA1012 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'KIAA1012 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.376 (Fisher's exact test), Q value = 0.71

Table S3990.  Gene #363: 'KIAA1012 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
KIAA1012 MUTATED 8 3 7
KIAA1012 WILD-TYPE 79 77 93
'KIAA1012 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.299 (Fisher's exact test), Q value = 0.63

Table S3991.  Gene #363: 'KIAA1012 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
KIAA1012 MUTATED 3 7 11
KIAA1012 WILD-TYPE 86 153 127
'KIAA1012 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S3992.  Gene #363: 'KIAA1012 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
KIAA1012 MUTATED 10 7 4
KIAA1012 WILD-TYPE 172 126 68
'KIAA1012 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.531 (Fisher's exact test), Q value = 0.85

Table S3993.  Gene #363: 'KIAA1012 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
KIAA1012 MUTATED 5 7 6 7
KIAA1012 WILD-TYPE 107 89 86 179
'KIAA1012 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00716 (Fisher's exact test), Q value = 0.078

Table S3994.  Gene #363: 'KIAA1012 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
KIAA1012 MUTATED 4 6 6 1 2 1 5
KIAA1012 WILD-TYPE 56 44 43 39 61 124 94

Figure S1267.  Get High-res Image Gene #363: 'KIAA1012 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'KIAA1012 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.347 (Fisher's exact test), Q value = 0.67

Table S3995.  Gene #363: 'KIAA1012 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
KIAA1012 MUTATED 11 3 2 9
KIAA1012 WILD-TYPE 119 75 66 187
'KIAA1012 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0448 (Fisher's exact test), Q value = 0.23

Table S3996.  Gene #363: 'KIAA1012 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
KIAA1012 MUTATED 4 6 1 0 7 2 2 1 2
KIAA1012 WILD-TYPE 36 56 27 80 62 46 41 27 72

Figure S1268.  Get High-res Image Gene #363: 'KIAA1012 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'KIAA1012 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.146 (Fisher's exact test), Q value = 0.43

Table S3997.  Gene #363: 'KIAA1012 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
KIAA1012 MUTATED 3 0 0 1
KIAA1012 WILD-TYPE 30 31 27 18
'KIAA1012 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.429 (Fisher's exact test), Q value = 0.76

Table S3998.  Gene #363: 'KIAA1012 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
KIAA1012 MUTATED 4 0 0 0
KIAA1012 WILD-TYPE 50 10 24 22
'CHML MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.165 (Fisher's exact test), Q value = 0.46

Table S3999.  Gene #364: 'CHML MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
CHML MUTATED 3 1 0 1
CHML WILD-TYPE 43 57 64 42
'CHML MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0184 (Fisher's exact test), Q value = 0.14

Table S4000.  Gene #364: 'CHML MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
CHML MUTATED 4 1 0
CHML WILD-TYPE 47 82 77

Figure S1269.  Get High-res Image Gene #364: 'CHML MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'CHML MUTATION STATUS' versus 'CN_CNMF'

P value = 0.218 (Fisher's exact test), Q value = 0.53

Table S4001.  Gene #364: 'CHML MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
CHML MUTATED 13 5 5 1
CHML WILD-TYPE 165 178 96 19
'CHML MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0433 (Fisher's exact test), Q value = 0.22

Table S4002.  Gene #364: 'CHML MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
CHML MUTATED 11 2 7
CHML WILD-TYPE 76 78 93

Figure S1270.  Get High-res Image Gene #364: 'CHML MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'CHML MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.688 (Fisher's exact test), Q value = 0.97

Table S4003.  Gene #364: 'CHML MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
CHML MUTATED 5 6 8
CHML WILD-TYPE 84 154 130
'CHML MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0226 (Fisher's exact test), Q value = 0.15

Table S4004.  Gene #364: 'CHML MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
CHML MUTATED 10 2 7
CHML WILD-TYPE 172 131 65

Figure S1271.  Get High-res Image Gene #364: 'CHML MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'CHML MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00375 (Fisher's exact test), Q value = 0.056

Table S4005.  Gene #364: 'CHML MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
CHML MUTATED 3 6 11 4
CHML WILD-TYPE 109 90 81 182

Figure S1272.  Get High-res Image Gene #364: 'CHML MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'CHML MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0343 (Fisher's exact test), Q value = 0.19

Table S4006.  Gene #364: 'CHML MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
CHML MUTATED 2 4 5 3 5 1 4
CHML WILD-TYPE 58 46 44 37 58 124 95

Figure S1273.  Get High-res Image Gene #364: 'CHML MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CHML MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.133 (Fisher's exact test), Q value = 0.41

Table S4007.  Gene #364: 'CHML MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
CHML MUTATED 9 7 2 6
CHML WILD-TYPE 121 71 66 190
'CHML MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.451 (Fisher's exact test), Q value = 0.78

Table S4008.  Gene #364: 'CHML MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
CHML MUTATED 3 6 0 5 3 2 3 1 1
CHML WILD-TYPE 37 56 28 75 66 46 40 27 73
'CHML MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.547 (Fisher's exact test), Q value = 0.87

Table S4009.  Gene #364: 'CHML MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
CHML MUTATED 3 2 1 3
CHML WILD-TYPE 30 29 26 16
'CHML MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.357 (Fisher's exact test), Q value = 0.69

Table S4010.  Gene #364: 'CHML MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
CHML MUTATED 6 1 0 2
CHML WILD-TYPE 48 9 24 20
'TGFBR1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0353 (Fisher's exact test), Q value = 0.19

Table S4011.  Gene #365: 'TGFBR1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
TGFBR1 MUTATED 1 0 1 4
TGFBR1 WILD-TYPE 45 58 63 39

Figure S1274.  Get High-res Image Gene #365: 'TGFBR1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'TGFBR1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.244 (Fisher's exact test), Q value = 0.57

Table S4012.  Gene #365: 'TGFBR1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
TGFBR1 MUTATED 3 1 2
TGFBR1 WILD-TYPE 48 82 75
'TGFBR1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00025 (Fisher's exact test), Q value = 0.0096

Table S4013.  Gene #365: 'TGFBR1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
TGFBR1 MUTATED 15 2 0 0
TGFBR1 WILD-TYPE 163 181 101 20

Figure S1275.  Get High-res Image Gene #365: 'TGFBR1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'TGFBR1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.147 (Fisher's exact test), Q value = 0.43

Table S4014.  Gene #365: 'TGFBR1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
TGFBR1 MUTATED 3 1 7
TGFBR1 WILD-TYPE 84 79 93
'TGFBR1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.594 (Fisher's exact test), Q value = 0.9

Table S4015.  Gene #365: 'TGFBR1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
TGFBR1 MUTATED 2 6 7
TGFBR1 WILD-TYPE 87 154 131
'TGFBR1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.419 (Fisher's exact test), Q value = 0.75

Table S4016.  Gene #365: 'TGFBR1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
TGFBR1 MUTATED 7 7 1
TGFBR1 WILD-TYPE 175 126 71
'TGFBR1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.104 (Fisher's exact test), Q value = 0.36

Table S4017.  Gene #365: 'TGFBR1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
TGFBR1 MUTATED 1 7 3 6
TGFBR1 WILD-TYPE 111 89 89 180
'TGFBR1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00229 (Fisher's exact test), Q value = 0.041

Table S4018.  Gene #365: 'TGFBR1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
TGFBR1 MUTATED 0 3 4 0 3 0 7
TGFBR1 WILD-TYPE 60 47 45 40 60 125 92

Figure S1276.  Get High-res Image Gene #365: 'TGFBR1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'TGFBR1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.288 (Fisher's exact test), Q value = 0.62

Table S4019.  Gene #365: 'TGFBR1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
TGFBR1 MUTATED 3 3 0 9
TGFBR1 WILD-TYPE 127 75 68 187
'TGFBR1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.333 (Fisher's exact test), Q value = 0.66

Table S4020.  Gene #365: 'TGFBR1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
TGFBR1 MUTATED 1 3 2 1 5 0 1 0 2
TGFBR1 WILD-TYPE 39 59 26 79 64 48 42 28 72
'ETAA1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00546 (Fisher's exact test), Q value = 0.067

Table S4021.  Gene #366: 'ETAA1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ETAA1 MUTATED 2 0 0 4
ETAA1 WILD-TYPE 44 58 64 39

Figure S1277.  Get High-res Image Gene #366: 'ETAA1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'ETAA1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.88 (Fisher's exact test), Q value = 1

Table S4022.  Gene #366: 'ETAA1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ETAA1 MUTATED 2 2 2
ETAA1 WILD-TYPE 49 81 75
'ETAA1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0523 (Fisher's exact test), Q value = 0.25

Table S4023.  Gene #366: 'ETAA1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ETAA1 MUTATED 12 3 2 1
ETAA1 WILD-TYPE 166 180 99 19
'ETAA1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.535 (Fisher's exact test), Q value = 0.85

Table S4024.  Gene #366: 'ETAA1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ETAA1 MUTATED 4 2 6
ETAA1 WILD-TYPE 83 78 94
'ETAA1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.593 (Fisher's exact test), Q value = 0.9

Table S4025.  Gene #366: 'ETAA1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ETAA1 MUTATED 2 6 7
ETAA1 WILD-TYPE 87 154 131
'ETAA1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.733 (Fisher's exact test), Q value = 1

Table S4026.  Gene #366: 'ETAA1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ETAA1 MUTATED 9 4 2
ETAA1 WILD-TYPE 173 129 70
'ETAA1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.175 (Fisher's exact test), Q value = 0.47

Table S4027.  Gene #366: 'ETAA1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ETAA1 MUTATED 2 7 4 5
ETAA1 WILD-TYPE 110 89 88 181
'ETAA1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.129 (Fisher's exact test), Q value = 0.4

Table S4028.  Gene #366: 'ETAA1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ETAA1 MUTATED 2 2 5 1 3 1 4
ETAA1 WILD-TYPE 58 48 44 39 60 124 95
'ETAA1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.231 (Fisher's exact test), Q value = 0.55

Table S4029.  Gene #366: 'ETAA1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ETAA1 MUTATED 6 2 0 10
ETAA1 WILD-TYPE 124 76 68 186
'ETAA1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0564 (Fisher's exact test), Q value = 0.26

Table S4030.  Gene #366: 'ETAA1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ETAA1 MUTATED 1 4 3 2 6 0 0 1 1
ETAA1 WILD-TYPE 39 58 25 78 63 48 43 27 73
'ETAA1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0863 (Fisher's exact test), Q value = 0.32

Table S4031.  Gene #366: 'ETAA1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
ETAA1 MUTATED 0 1 0 2
ETAA1 WILD-TYPE 33 30 27 17
'ETAA1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.314 (Fisher's exact test), Q value = 0.64

Table S4032.  Gene #366: 'ETAA1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
ETAA1 MUTATED 1 1 1 0
ETAA1 WILD-TYPE 53 9 23 22
'DEPDC5 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.132 (Fisher's exact test), Q value = 0.41

Table S4033.  Gene #367: 'DEPDC5 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
DEPDC5 MUTATED 1 0 1 3
DEPDC5 WILD-TYPE 45 58 63 40
'DEPDC5 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.116 (Fisher's exact test), Q value = 0.38

Table S4034.  Gene #367: 'DEPDC5 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
DEPDC5 MUTATED 2 0 3
DEPDC5 WILD-TYPE 49 83 74
'DEPDC5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00013 (Fisher's exact test), Q value = 0.0063

Table S4035.  Gene #367: 'DEPDC5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
DEPDC5 MUTATED 15 5 0 4
DEPDC5 WILD-TYPE 163 178 101 16

Figure S1278.  Get High-res Image Gene #367: 'DEPDC5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'DEPDC5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.145 (Fisher's exact test), Q value = 0.42

Table S4036.  Gene #367: 'DEPDC5 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
DEPDC5 MUTATED 6 2 10
DEPDC5 WILD-TYPE 81 78 90
'DEPDC5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.96 (Fisher's exact test), Q value = 1

Table S4037.  Gene #367: 'DEPDC5 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
DEPDC5 MUTATED 5 8 8
DEPDC5 WILD-TYPE 84 152 130
'DEPDC5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.955 (Fisher's exact test), Q value = 1

Table S4038.  Gene #367: 'DEPDC5 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
DEPDC5 MUTATED 10 8 3
DEPDC5 WILD-TYPE 172 125 69
'DEPDC5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.384 (Fisher's exact test), Q value = 0.71

Table S4039.  Gene #367: 'DEPDC5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
DEPDC5 MUTATED 5 7 6 6
DEPDC5 WILD-TYPE 107 89 86 180
'DEPDC5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 3e-05 (Fisher's exact test), Q value = 0.0022

Table S4040.  Gene #367: 'DEPDC5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
DEPDC5 MUTATED 5 2 10 1 0 1 5
DEPDC5 WILD-TYPE 55 48 39 39 63 124 94

Figure S1279.  Get High-res Image Gene #367: 'DEPDC5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'DEPDC5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0237 (Fisher's exact test), Q value = 0.16

Table S4041.  Gene #367: 'DEPDC5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
DEPDC5 MUTATED 12 3 0 8
DEPDC5 WILD-TYPE 118 75 68 188

Figure S1280.  Get High-res Image Gene #367: 'DEPDC5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'DEPDC5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0205 (Fisher's exact test), Q value = 0.14

Table S4042.  Gene #367: 'DEPDC5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
DEPDC5 MUTATED 3 4 3 1 7 3 2 0 0
DEPDC5 WILD-TYPE 37 58 25 79 62 45 41 28 74

Figure S1281.  Get High-res Image Gene #367: 'DEPDC5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'DEPDC5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0333 (Fisher's exact test), Q value = 0.19

Table S4043.  Gene #367: 'DEPDC5 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
DEPDC5 MUTATED 5 0 1 0
DEPDC5 WILD-TYPE 28 31 26 19

Figure S1282.  Get High-res Image Gene #367: 'DEPDC5 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'DEPDC5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.565 (Fisher's exact test), Q value = 0.87

Table S4044.  Gene #367: 'DEPDC5 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
DEPDC5 MUTATED 5 0 1 0
DEPDC5 WILD-TYPE 49 10 23 22
'DPCR1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00975 (Fisher's exact test), Q value = 0.094

Table S4045.  Gene #368: 'DPCR1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
DPCR1 MUTATED 11 3 0 1
DPCR1 WILD-TYPE 167 180 101 19

Figure S1283.  Get High-res Image Gene #368: 'DPCR1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'DPCR1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.28 (Fisher's exact test), Q value = 0.61

Table S4046.  Gene #368: 'DPCR1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
DPCR1 MUTATED 7 3 3
DPCR1 WILD-TYPE 80 77 97
'DPCR1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.736 (Fisher's exact test), Q value = 1

Table S4047.  Gene #368: 'DPCR1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
DPCR1 MUTATED 2 6 6
DPCR1 WILD-TYPE 87 154 132
'DPCR1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.364 (Fisher's exact test), Q value = 0.69

Table S4048.  Gene #368: 'DPCR1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
DPCR1 MUTATED 6 7 1
DPCR1 WILD-TYPE 176 126 71
'DPCR1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.346 (Fisher's exact test), Q value = 0.67

Table S4049.  Gene #368: 'DPCR1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
DPCR1 MUTATED 4 5 3 3
DPCR1 WILD-TYPE 108 91 89 183
'DPCR1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0273 (Fisher's exact test), Q value = 0.17

Table S4050.  Gene #368: 'DPCR1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
DPCR1 MUTATED 2 3 4 1 3 0 2
DPCR1 WILD-TYPE 58 47 45 39 60 125 97

Figure S1284.  Get High-res Image Gene #368: 'DPCR1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'DPCR1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0952 (Fisher's exact test), Q value = 0.34

Table S4051.  Gene #368: 'DPCR1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
DPCR1 MUTATED 7 4 0 4
DPCR1 WILD-TYPE 123 74 68 192
'DPCR1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.271 (Fisher's exact test), Q value = 0.6

Table S4052.  Gene #368: 'DPCR1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
DPCR1 MUTATED 2 5 2 2 2 0 1 0 1
DPCR1 WILD-TYPE 38 57 26 78 67 48 42 28 73
'DPCR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.203 (Fisher's exact test), Q value = 0.51

Table S4053.  Gene #368: 'DPCR1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
DPCR1 MUTATED 4 1 0 1
DPCR1 WILD-TYPE 29 30 27 18
'DPCR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.169 (Fisher's exact test), Q value = 0.46

Table S4054.  Gene #368: 'DPCR1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
DPCR1 MUTATED 6 0 0 0
DPCR1 WILD-TYPE 48 10 24 22
'NOTCH2NL MUTATION STATUS' versus 'CN_CNMF'

P value = 0.15 (Fisher's exact test), Q value = 0.43

Table S4055.  Gene #369: 'NOTCH2NL MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
NOTCH2NL MUTATED 4 0 2 0
NOTCH2NL WILD-TYPE 174 183 99 20
'NOTCH2NL MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.831 (Fisher's exact test), Q value = 1

Table S4056.  Gene #369: 'NOTCH2NL MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
NOTCH2NL MUTATED 2 1 1
NOTCH2NL WILD-TYPE 85 79 99
'NOTCH2NL MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.444 (Fisher's exact test), Q value = 0.77

Table S4057.  Gene #369: 'NOTCH2NL MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
NOTCH2NL MUTATED 2 1 3
NOTCH2NL WILD-TYPE 87 159 135
'NOTCH2NL MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.664 (Fisher's exact test), Q value = 0.95

Table S4058.  Gene #369: 'NOTCH2NL MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
NOTCH2NL MUTATED 4 2 0
NOTCH2NL WILD-TYPE 178 131 72
'NOTCH2NL MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.24 (Fisher's exact test), Q value = 0.56

Table S4059.  Gene #369: 'NOTCH2NL MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
NOTCH2NL MUTATED 0 3 1 2
NOTCH2NL WILD-TYPE 112 93 91 184
'NOTCH2NL MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.38 (Fisher's exact test), Q value = 0.71

Table S4060.  Gene #369: 'NOTCH2NL MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
NOTCH2NL MUTATED 0 1 1 1 1 0 2
NOTCH2NL WILD-TYPE 60 49 48 39 62 125 97
'NOTCH2NL MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.931 (Fisher's exact test), Q value = 1

Table S4061.  Gene #369: 'NOTCH2NL MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
NOTCH2NL MUTATED 1 1 0 3
NOTCH2NL WILD-TYPE 129 77 68 193
'NOTCH2NL MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.887 (Fisher's exact test), Q value = 1

Table S4062.  Gene #369: 'NOTCH2NL MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
NOTCH2NL MUTATED 1 1 0 0 1 1 0 0 1
NOTCH2NL WILD-TYPE 39 61 28 80 68 47 43 28 73
'RNF160 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.221 (Fisher's exact test), Q value = 0.54

Table S4063.  Gene #370: 'RNF160 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
RNF160 MUTATED 2 1 0 2
RNF160 WILD-TYPE 44 57 64 41
'RNF160 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.252 (Fisher's exact test), Q value = 0.58

Table S4064.  Gene #370: 'RNF160 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
RNF160 MUTATED 3 1 1
RNF160 WILD-TYPE 48 82 76
'RNF160 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00802 (Fisher's exact test), Q value = 0.084

Table S4065.  Gene #370: 'RNF160 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
RNF160 MUTATED 11 1 6 0
RNF160 WILD-TYPE 167 182 95 20

Figure S1285.  Get High-res Image Gene #370: 'RNF160 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'RNF160 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.811 (Fisher's exact test), Q value = 1

Table S4066.  Gene #370: 'RNF160 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
RNF160 MUTATED 5 3 4
RNF160 WILD-TYPE 82 77 96
'RNF160 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0721 (Fisher's exact test), Q value = 0.29

Table S4067.  Gene #370: 'RNF160 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
RNF160 MUTATED 0 8 6
RNF160 WILD-TYPE 89 152 132
'RNF160 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.16 (Fisher's exact test), Q value = 0.45

Table S4068.  Gene #370: 'RNF160 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
RNF160 MUTATED 8 6 0
RNF160 WILD-TYPE 174 127 72
'RNF160 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.904 (Fisher's exact test), Q value = 1

Table S4069.  Gene #370: 'RNF160 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
RNF160 MUTATED 5 3 4 6
RNF160 WILD-TYPE 107 93 88 180
'RNF160 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.677 (Fisher's exact test), Q value = 0.96

Table S4070.  Gene #370: 'RNF160 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
RNF160 MUTATED 4 2 2 1 3 2 4
RNF160 WILD-TYPE 56 48 47 39 60 123 95
'RNF160 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.422 (Fisher's exact test), Q value = 0.75

Table S4071.  Gene #370: 'RNF160 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
RNF160 MUTATED 6 4 2 4
RNF160 WILD-TYPE 124 74 66 192
'RNF160 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.612 (Fisher's exact test), Q value = 0.91

Table S4072.  Gene #370: 'RNF160 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
RNF160 MUTATED 1 4 2 2 2 1 1 2 1
RNF160 WILD-TYPE 39 58 26 78 67 47 42 26 73
'RNF160 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.425 (Fisher's exact test), Q value = 0.75

Table S4073.  Gene #370: 'RNF160 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
RNF160 MUTATED 0 1 2 1
RNF160 WILD-TYPE 33 30 25 18
'RNF160 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S4074.  Gene #370: 'RNF160 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
RNF160 MUTATED 2 0 1 1
RNF160 WILD-TYPE 52 10 23 21
'MYO3B MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0659 (Fisher's exact test), Q value = 0.28

Table S4075.  Gene #371: 'MYO3B MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
MYO3B MUTATED 1 0 0 2
MYO3B WILD-TYPE 45 58 64 41
'MYO3B MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.185 (Fisher's exact test), Q value = 0.49

Table S4076.  Gene #371: 'MYO3B MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
MYO3B MUTATED 2 0 1
MYO3B WILD-TYPE 49 83 76
'MYO3B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.229 (Fisher's exact test), Q value = 0.55

Table S4077.  Gene #371: 'MYO3B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
MYO3B MUTATED 18 11 4 1
MYO3B WILD-TYPE 160 172 97 19
'MYO3B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.456 (Fisher's exact test), Q value = 0.78

Table S4078.  Gene #371: 'MYO3B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
MYO3B MUTATED 13 9 9
MYO3B WILD-TYPE 74 71 91
'MYO3B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.31 (Fisher's exact test), Q value = 0.64

Table S4079.  Gene #371: 'MYO3B MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
MYO3B MUTATED 5 11 15
MYO3B WILD-TYPE 84 149 123
'MYO3B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.708 (Fisher's exact test), Q value = 0.98

Table S4080.  Gene #371: 'MYO3B MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
MYO3B MUTATED 15 12 4
MYO3B WILD-TYPE 167 121 68
'MYO3B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0128 (Fisher's exact test), Q value = 0.11

Table S4081.  Gene #371: 'MYO3B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
MYO3B MUTATED 9 11 9 5
MYO3B WILD-TYPE 103 85 83 181

Figure S1286.  Get High-res Image Gene #371: 'MYO3B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'MYO3B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00019 (Fisher's exact test), Q value = 0.008

Table S4082.  Gene #371: 'MYO3B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
MYO3B MUTATED 6 7 8 5 4 2 2
MYO3B WILD-TYPE 54 43 41 35 59 123 97

Figure S1287.  Get High-res Image Gene #371: 'MYO3B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'MYO3B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00484 (Fisher's exact test), Q value = 0.063

Table S4083.  Gene #371: 'MYO3B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
MYO3B MUTATED 16 8 3 6
MYO3B WILD-TYPE 114 70 65 190

Figure S1288.  Get High-res Image Gene #371: 'MYO3B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'MYO3B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0227 (Fisher's exact test), Q value = 0.15

Table S4084.  Gene #371: 'MYO3B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
MYO3B MUTATED 8 6 2 3 5 2 5 1 1
MYO3B WILD-TYPE 32 56 26 77 64 46 38 27 73

Figure S1289.  Get High-res Image Gene #371: 'MYO3B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'MYO3B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.154 (Fisher's exact test), Q value = 0.44

Table S4085.  Gene #371: 'MYO3B MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
MYO3B MUTATED 6 1 1 1
MYO3B WILD-TYPE 27 30 26 18
'MYO3B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.519 (Fisher's exact test), Q value = 0.84

Table S4086.  Gene #371: 'MYO3B MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
MYO3B MUTATED 7 0 1 1
MYO3B WILD-TYPE 47 10 23 21
'TRIM23 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0332 (Fisher's exact test), Q value = 0.19

Table S4087.  Gene #372: 'TRIM23 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
TRIM23 MUTATED 3 0 0 1
TRIM23 WILD-TYPE 43 58 64 42

Figure S1290.  Get High-res Image Gene #372: 'TRIM23 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'TRIM23 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.559 (Fisher's exact test), Q value = 0.87

Table S4088.  Gene #372: 'TRIM23 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
TRIM23 MUTATED 2 1 1
TRIM23 WILD-TYPE 49 82 76
'TRIM23 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.566 (Fisher's exact test), Q value = 0.87

Table S4089.  Gene #372: 'TRIM23 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
TRIM23 MUTATED 7 3 3 0
TRIM23 WILD-TYPE 171 180 98 20
'TRIM23 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.582 (Fisher's exact test), Q value = 0.89

Table S4090.  Gene #372: 'TRIM23 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
TRIM23 MUTATED 2 2 5
TRIM23 WILD-TYPE 85 78 95
'TRIM23 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.19 (Fisher's exact test), Q value = 0.49

Table S4091.  Gene #372: 'TRIM23 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
TRIM23 MUTATED 0 6 4
TRIM23 WILD-TYPE 89 154 134
'TRIM23 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.328 (Fisher's exact test), Q value = 0.66

Table S4092.  Gene #372: 'TRIM23 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
TRIM23 MUTATED 5 5 0
TRIM23 WILD-TYPE 177 128 72
'TRIM23 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.795 (Fisher's exact test), Q value = 1

Table S4093.  Gene #372: 'TRIM23 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
TRIM23 MUTATED 3 4 2 4
TRIM23 WILD-TYPE 109 92 90 182
'TRIM23 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.251 (Fisher's exact test), Q value = 0.58

Table S4094.  Gene #372: 'TRIM23 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
TRIM23 MUTATED 2 3 3 1 1 1 2
TRIM23 WILD-TYPE 58 47 46 39 62 124 97
'TRIM23 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.496 (Fisher's exact test), Q value = 0.82

Table S4095.  Gene #372: 'TRIM23 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
TRIM23 MUTATED 6 1 2 4
TRIM23 WILD-TYPE 124 77 66 192
'TRIM23 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0561 (Fisher's exact test), Q value = 0.26

Table S4096.  Gene #372: 'TRIM23 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
TRIM23 MUTATED 0 0 1 2 5 1 3 1 0
TRIM23 WILD-TYPE 40 62 27 78 64 47 40 27 74
'TRIM23 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.781 (Fisher's exact test), Q value = 1

Table S4097.  Gene #372: 'TRIM23 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
TRIM23 MUTATED 1 0 1 1
TRIM23 WILD-TYPE 32 31 26 18
'TRIM23 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.692 (Fisher's exact test), Q value = 0.97

Table S4098.  Gene #372: 'TRIM23 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
TRIM23 MUTATED 1 0 1 1
TRIM23 WILD-TYPE 53 10 23 21
'AGFG1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.566 (Fisher's exact test), Q value = 0.87

Table S4099.  Gene #373: 'AGFG1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
AGFG1 MUTATED 0 1 1 2
AGFG1 WILD-TYPE 46 57 63 41
'AGFG1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.291 (Fisher's exact test), Q value = 0.62

Table S4100.  Gene #373: 'AGFG1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
AGFG1 MUTATED 1 3 0
AGFG1 WILD-TYPE 50 80 77
'AGFG1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.212 (Fisher's exact test), Q value = 0.52

Table S4101.  Gene #373: 'AGFG1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
AGFG1 MUTATED 9 5 1 1
AGFG1 WILD-TYPE 169 178 100 19
'AGFG1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.617 (Fisher's exact test), Q value = 0.92

Table S4102.  Gene #373: 'AGFG1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
AGFG1 MUTATED 5 2 5
AGFG1 WILD-TYPE 82 78 95
'AGFG1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.444 (Fisher's exact test), Q value = 0.77

Table S4103.  Gene #373: 'AGFG1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
AGFG1 MUTATED 3 8 3
AGFG1 WILD-TYPE 86 152 135
'AGFG1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.198 (Fisher's exact test), Q value = 0.5

Table S4104.  Gene #373: 'AGFG1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
AGFG1 MUTATED 4 8 2
AGFG1 WILD-TYPE 178 125 70
'AGFG1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.446 (Fisher's exact test), Q value = 0.77

Table S4105.  Gene #373: 'AGFG1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
AGFG1 MUTATED 2 4 5 5
AGFG1 WILD-TYPE 110 92 87 181
'AGFG1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0216 (Fisher's exact test), Q value = 0.15

Table S4106.  Gene #373: 'AGFG1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
AGFG1 MUTATED 0 2 6 2 1 2 3
AGFG1 WILD-TYPE 60 48 43 38 62 123 96

Figure S1291.  Get High-res Image Gene #373: 'AGFG1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'AGFG1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.414 (Fisher's exact test), Q value = 0.74

Table S4107.  Gene #373: 'AGFG1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
AGFG1 MUTATED 5 2 4 4
AGFG1 WILD-TYPE 125 76 64 192
'AGFG1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0825 (Fisher's exact test), Q value = 0.31

Table S4108.  Gene #373: 'AGFG1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
AGFG1 MUTATED 3 2 3 0 2 0 1 1 3
AGFG1 WILD-TYPE 37 60 25 80 67 48 42 27 71
'AGFG1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.137 (Fisher's exact test), Q value = 0.41

Table S4109.  Gene #373: 'AGFG1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
AGFG1 MUTATED 1 0 0 2
AGFG1 WILD-TYPE 32 31 27 17
'AGFG1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S4110.  Gene #373: 'AGFG1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
AGFG1 MUTATED 2 0 1 0
AGFG1 WILD-TYPE 52 10 23 22
'KCNS3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.405 (Fisher's exact test), Q value = 0.73

Table S4111.  Gene #374: 'KCNS3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
KCNS3 MUTATED 1 0 1 2
KCNS3 WILD-TYPE 45 58 63 41
'KCNS3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S4112.  Gene #374: 'KCNS3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
KCNS3 MUTATED 1 2 1
KCNS3 WILD-TYPE 50 81 76
'KCNS3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.32 (Fisher's exact test), Q value = 0.65

Table S4113.  Gene #374: 'KCNS3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
KCNS3 MUTATED 12 6 3 0
KCNS3 WILD-TYPE 166 177 98 20
'KCNS3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.126 (Fisher's exact test), Q value = 0.4

Table S4114.  Gene #374: 'KCNS3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
KCNS3 MUTATED 4 3 11
KCNS3 WILD-TYPE 83 77 89
'KCNS3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.312 (Fisher's exact test), Q value = 0.64

Table S4115.  Gene #374: 'KCNS3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
KCNS3 MUTATED 2 11 8
KCNS3 WILD-TYPE 87 149 130
'KCNS3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.505 (Fisher's exact test), Q value = 0.83

Table S4116.  Gene #374: 'KCNS3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
KCNS3 MUTATED 10 9 2
KCNS3 WILD-TYPE 172 124 70
'KCNS3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.177 (Fisher's exact test), Q value = 0.48

Table S4117.  Gene #374: 'KCNS3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
KCNS3 MUTATED 5 7 5 4
KCNS3 WILD-TYPE 107 89 87 182
'KCNS3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0158 (Fisher's exact test), Q value = 0.12

Table S4118.  Gene #374: 'KCNS3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
KCNS3 MUTATED 5 4 5 2 0 2 3
KCNS3 WILD-TYPE 55 46 44 38 63 123 96

Figure S1292.  Get High-res Image Gene #374: 'KCNS3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'KCNS3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.068 (Fisher's exact test), Q value = 0.28

Table S4119.  Gene #374: 'KCNS3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
KCNS3 MUTATED 11 1 3 6
KCNS3 WILD-TYPE 119 77 65 190
'KCNS3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0278 (Fisher's exact test), Q value = 0.17

Table S4120.  Gene #374: 'KCNS3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
KCNS3 MUTATED 1 1 2 8 4 1 4 0 0
KCNS3 WILD-TYPE 39 61 26 72 65 47 39 28 74

Figure S1293.  Get High-res Image Gene #374: 'KCNS3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'KCNS3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0309 (Fisher's exact test), Q value = 0.18

Table S4121.  Gene #374: 'KCNS3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
KCNS3 MUTATED 2 1 0 4
KCNS3 WILD-TYPE 31 30 27 15

Figure S1294.  Get High-res Image Gene #374: 'KCNS3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'KCNS3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.939 (Fisher's exact test), Q value = 1

Table S4122.  Gene #374: 'KCNS3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
KCNS3 MUTATED 4 0 1 2
KCNS3 WILD-TYPE 50 10 23 20
'GPR112 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.288 (Fisher's exact test), Q value = 0.62

Table S4123.  Gene #375: 'GPR112 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
GPR112 MUTATED 6 2 4 4
GPR112 WILD-TYPE 40 56 60 39
'GPR112 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.045 (Fisher's exact test), Q value = 0.23

Table S4124.  Gene #375: 'GPR112 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
GPR112 MUTATED 8 3 5
GPR112 WILD-TYPE 43 80 72

Figure S1295.  Get High-res Image Gene #375: 'GPR112 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'GPR112 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.031 (Fisher's exact test), Q value = 0.18

Table S4125.  Gene #375: 'GPR112 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
GPR112 MUTATED 21 7 9 1
GPR112 WILD-TYPE 157 176 92 19

Figure S1296.  Get High-res Image Gene #375: 'GPR112 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'GPR112 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.511 (Fisher's exact test), Q value = 0.83

Table S4126.  Gene #375: 'GPR112 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
GPR112 MUTATED 10 5 9
GPR112 WILD-TYPE 77 75 91
'GPR112 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.612 (Fisher's exact test), Q value = 0.91

Table S4127.  Gene #375: 'GPR112 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
GPR112 MUTATED 5 15 12
GPR112 WILD-TYPE 84 145 126
'GPR112 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.574 (Fisher's exact test), Q value = 0.88

Table S4128.  Gene #375: 'GPR112 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
GPR112 MUTATED 13 11 8
GPR112 WILD-TYPE 169 122 64
'GPR112 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.678 (Fisher's exact test), Q value = 0.96

Table S4129.  Gene #375: 'GPR112 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
GPR112 MUTATED 11 5 7 15
GPR112 WILD-TYPE 101 91 85 171
'GPR112 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.271 (Fisher's exact test), Q value = 0.6

Table S4130.  Gene #375: 'GPR112 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
GPR112 MUTATED 5 4 5 3 5 4 12
GPR112 WILD-TYPE 55 46 44 37 58 121 87
'GPR112 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.408 (Fisher's exact test), Q value = 0.73

Table S4131.  Gene #375: 'GPR112 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
GPR112 MUTATED 12 7 2 16
GPR112 WILD-TYPE 118 71 66 180
'GPR112 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.35 (Fisher's exact test), Q value = 0.68

Table S4132.  Gene #375: 'GPR112 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
GPR112 MUTATED 4 6 4 7 8 3 1 0 4
GPR112 WILD-TYPE 36 56 24 73 61 45 42 28 70
'GPR112 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.25 (Fisher's exact test), Q value = 0.58

Table S4133.  Gene #375: 'GPR112 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
GPR112 MUTATED 4 2 1 4
GPR112 WILD-TYPE 29 29 26 15
'GPR112 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.789 (Fisher's exact test), Q value = 1

Table S4134.  Gene #375: 'GPR112 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
GPR112 MUTATED 7 1 2 1
GPR112 WILD-TYPE 47 9 22 21
'PTPRK MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00105 (Fisher's exact test), Q value = 0.025

Table S4135.  Gene #376: 'PTPRK MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
PTPRK MUTATED 7 0 1 2
PTPRK WILD-TYPE 39 58 63 41

Figure S1297.  Get High-res Image Gene #376: 'PTPRK MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'PTPRK MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 3e-05 (Fisher's exact test), Q value = 0.0022

Table S4136.  Gene #376: 'PTPRK MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
PTPRK MUTATED 9 1 0
PTPRK WILD-TYPE 42 82 77

Figure S1298.  Get High-res Image Gene #376: 'PTPRK MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'PTPRK MUTATION STATUS' versus 'CN_CNMF'

P value = 3e-05 (Fisher's exact test), Q value = 0.0022

Table S4137.  Gene #376: 'PTPRK MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
PTPRK MUTATED 27 5 4 0
PTPRK WILD-TYPE 151 178 97 20

Figure S1299.  Get High-res Image Gene #376: 'PTPRK MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'PTPRK MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.365 (Fisher's exact test), Q value = 0.69

Table S4138.  Gene #376: 'PTPRK MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
PTPRK MUTATED 10 5 12
PTPRK WILD-TYPE 77 75 88
'PTPRK MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.449 (Fisher's exact test), Q value = 0.77

Table S4139.  Gene #376: 'PTPRK MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
PTPRK MUTATED 5 11 14
PTPRK WILD-TYPE 84 149 124
'PTPRK MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.315 (Fisher's exact test), Q value = 0.64

Table S4140.  Gene #376: 'PTPRK MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
PTPRK MUTATED 18 7 5
PTPRK WILD-TYPE 164 126 67
'PTPRK MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.398 (Fisher's exact test), Q value = 0.72

Table S4141.  Gene #376: 'PTPRK MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
PTPRK MUTATED 6 11 8 13
PTPRK WILD-TYPE 106 85 84 173
'PTPRK MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 4e-05 (Fisher's exact test), Q value = 0.0027

Table S4142.  Gene #376: 'PTPRK MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
PTPRK MUTATED 4 2 13 1 4 2 12
PTPRK WILD-TYPE 56 48 36 39 59 123 87

Figure S1300.  Get High-res Image Gene #376: 'PTPRK MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'PTPRK MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0759 (Fisher's exact test), Q value = 0.3

Table S4143.  Gene #376: 'PTPRK MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
PTPRK MUTATED 15 6 1 15
PTPRK WILD-TYPE 115 72 67 181
'PTPRK MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00132 (Fisher's exact test), Q value = 0.029

Table S4144.  Gene #376: 'PTPRK MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
PTPRK MUTATED 6 6 2 4 14 2 1 1 1
PTPRK WILD-TYPE 34 56 26 76 55 46 42 27 73

Figure S1301.  Get High-res Image Gene #376: 'PTPRK MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'PTPRK MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.31 (Fisher's exact test), Q value = 0.64

Table S4145.  Gene #376: 'PTPRK MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
PTPRK MUTATED 5 1 1 1
PTPRK WILD-TYPE 28 30 26 18
'PTPRK MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.134 (Fisher's exact test), Q value = 0.41

Table S4146.  Gene #376: 'PTPRK MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
PTPRK MUTATED 2 0 2 4
PTPRK WILD-TYPE 52 10 22 18
'DCAF6 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00497 (Fisher's exact test), Q value = 0.064

Table S4147.  Gene #377: 'DCAF6 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
DCAF6 MUTATED 4 0 0 3
DCAF6 WILD-TYPE 42 58 64 40

Figure S1302.  Get High-res Image Gene #377: 'DCAF6 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'DCAF6 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.125 (Fisher's exact test), Q value = 0.39

Table S4148.  Gene #377: 'DCAF6 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
DCAF6 MUTATED 4 2 1
DCAF6 WILD-TYPE 47 81 76
'DCAF6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0535 (Fisher's exact test), Q value = 0.25

Table S4149.  Gene #377: 'DCAF6 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
DCAF6 MUTATED 12 4 1 0
DCAF6 WILD-TYPE 166 179 100 20
'DCAF6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.25 (Fisher's exact test), Q value = 0.58

Table S4150.  Gene #377: 'DCAF6 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
DCAF6 MUTATED 2 2 7
DCAF6 WILD-TYPE 85 78 93
'DCAF6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0508 (Fisher's exact test), Q value = 0.24

Table S4151.  Gene #377: 'DCAF6 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
DCAF6 MUTATED 0 6 8
DCAF6 WILD-TYPE 89 154 130
'DCAF6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.147 (Fisher's exact test), Q value = 0.43

Table S4152.  Gene #377: 'DCAF6 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
DCAF6 MUTATED 9 5 0
DCAF6 WILD-TYPE 173 128 72
'DCAF6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.547 (Fisher's exact test), Q value = 0.87

Table S4153.  Gene #377: 'DCAF6 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
DCAF6 MUTATED 2 4 5 7
DCAF6 WILD-TYPE 110 92 87 179
'DCAF6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00301 (Fisher's exact test), Q value = 0.049

Table S4154.  Gene #377: 'DCAF6 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
DCAF6 MUTATED 2 0 7 2 1 1 5
DCAF6 WILD-TYPE 58 50 42 38 62 124 94

Figure S1303.  Get High-res Image Gene #377: 'DCAF6 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'DCAF6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.546 (Fisher's exact test), Q value = 0.86

Table S4155.  Gene #377: 'DCAF6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
DCAF6 MUTATED 7 3 1 6
DCAF6 WILD-TYPE 123 75 67 190
'DCAF6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0179 (Fisher's exact test), Q value = 0.13

Table S4156.  Gene #377: 'DCAF6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
DCAF6 MUTATED 2 4 1 1 7 0 2 0 0
DCAF6 WILD-TYPE 38 58 27 79 62 48 41 28 74

Figure S1304.  Get High-res Image Gene #377: 'DCAF6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'DCAF6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.356 (Fisher's exact test), Q value = 0.69

Table S4157.  Gene #377: 'DCAF6 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
DCAF6 MUTATED 1 1 0 2
DCAF6 WILD-TYPE 32 30 27 17
'DCAF6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.87 (Fisher's exact test), Q value = 1

Table S4158.  Gene #377: 'DCAF6 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
DCAF6 MUTATED 3 0 1 0
DCAF6 WILD-TYPE 51 10 23 22
'CCDC18 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0738 (Fisher's exact test), Q value = 0.29

Table S4159.  Gene #378: 'CCDC18 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
CCDC18 MUTATED 2 0 0 2
CCDC18 WILD-TYPE 44 58 64 41
'CCDC18 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S4160.  Gene #378: 'CCDC18 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
CCDC18 MUTATED 1 2 1
CCDC18 WILD-TYPE 50 81 76
'CCDC18 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.569 (Fisher's exact test), Q value = 0.88

Table S4161.  Gene #378: 'CCDC18 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
CCDC18 MUTATED 7 3 3 0
CCDC18 WILD-TYPE 171 180 98 20
'CCDC18 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.638 (Fisher's exact test), Q value = 0.93

Table S4162.  Gene #378: 'CCDC18 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
CCDC18 MUTATED 4 3 2
CCDC18 WILD-TYPE 83 77 98
'CCDC18 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.26 (Fisher's exact test), Q value = 0.58

Table S4163.  Gene #378: 'CCDC18 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
CCDC18 MUTATED 0 5 4
CCDC18 WILD-TYPE 89 155 134
'CCDC18 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.294 (Fisher's exact test), Q value = 0.62

Table S4164.  Gene #378: 'CCDC18 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
CCDC18 MUTATED 4 5 0
CCDC18 WILD-TYPE 178 128 72
'CCDC18 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.45 (Fisher's exact test), Q value = 0.78

Table S4165.  Gene #378: 'CCDC18 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
CCDC18 MUTATED 4 1 4 4
CCDC18 WILD-TYPE 108 95 88 182
'CCDC18 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0931 (Fisher's exact test), Q value = 0.33

Table S4166.  Gene #378: 'CCDC18 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
CCDC18 MUTATED 5 1 1 0 3 1 2
CCDC18 WILD-TYPE 55 49 48 40 60 124 97
'CCDC18 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.516 (Fisher's exact test), Q value = 0.84

Table S4167.  Gene #378: 'CCDC18 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
CCDC18 MUTATED 4 4 1 4
CCDC18 WILD-TYPE 126 74 67 192
'CCDC18 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.2 (Fisher's exact test), Q value = 0.5

Table S4168.  Gene #378: 'CCDC18 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
CCDC18 MUTATED 0 3 2 1 3 2 2 0 0
CCDC18 WILD-TYPE 40 59 26 79 66 46 41 28 74
'RAB28 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0613 (Fisher's exact test), Q value = 0.27

Table S4169.  Gene #379: 'RAB28 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
RAB28 MUTATED 6 0 1 0
RAB28 WILD-TYPE 172 183 100 20
'RAB28 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0655 (Fisher's exact test), Q value = 0.28

Table S4170.  Gene #379: 'RAB28 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
RAB28 MUTATED 1 0 5
RAB28 WILD-TYPE 86 80 95
'RAB28 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.433 (Fisher's exact test), Q value = 0.76

Table S4171.  Gene #379: 'RAB28 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
RAB28 MUTATED 0 4 3
RAB28 WILD-TYPE 89 156 135
'RAB28 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.684 (Fisher's exact test), Q value = 0.96

Table S4172.  Gene #379: 'RAB28 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
RAB28 MUTATED 4 3 0
RAB28 WILD-TYPE 178 130 72
'RAB28 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.122 (Fisher's exact test), Q value = 0.39

Table S4173.  Gene #379: 'RAB28 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
RAB28 MUTATED 1 4 1 1
RAB28 WILD-TYPE 111 92 91 185
'RAB28 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00111 (Fisher's exact test), Q value = 0.026

Table S4174.  Gene #379: 'RAB28 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
RAB28 MUTATED 2 1 4 0 0 0 0
RAB28 WILD-TYPE 58 49 45 40 63 125 99

Figure S1305.  Get High-res Image Gene #379: 'RAB28 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'RAB28 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.115 (Fisher's exact test), Q value = 0.38

Table S4175.  Gene #379: 'RAB28 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
RAB28 MUTATED 5 0 0 2
RAB28 WILD-TYPE 125 78 68 194
'RAB28 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.161 (Fisher's exact test), Q value = 0.45

Table S4176.  Gene #379: 'RAB28 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
RAB28 MUTATED 2 1 0 0 3 1 0 0 0
RAB28 WILD-TYPE 38 61 28 80 66 47 43 28 74
'ARHGEF10 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0015 (Fisher's exact test), Q value = 0.032

Table S4177.  Gene #380: 'ARHGEF10 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ARHGEF10 MUTATED 5 0 0 3
ARHGEF10 WILD-TYPE 41 58 64 40

Figure S1306.  Get High-res Image Gene #380: 'ARHGEF10 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'ARHGEF10 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1e-04 (Fisher's exact test), Q value = 0.0052

Table S4178.  Gene #380: 'ARHGEF10 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ARHGEF10 MUTATED 7 0 1
ARHGEF10 WILD-TYPE 44 83 76

Figure S1307.  Get High-res Image Gene #380: 'ARHGEF10 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'ARHGEF10 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00043 (Fisher's exact test), Q value = 0.014

Table S4179.  Gene #380: 'ARHGEF10 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ARHGEF10 MUTATED 19 3 2 0
ARHGEF10 WILD-TYPE 159 180 99 20

Figure S1308.  Get High-res Image Gene #380: 'ARHGEF10 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ARHGEF10 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0682 (Fisher's exact test), Q value = 0.28

Table S4180.  Gene #380: 'ARHGEF10 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ARHGEF10 MUTATED 8 1 6
ARHGEF10 WILD-TYPE 79 79 94
'ARHGEF10 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0318 (Fisher's exact test), Q value = 0.18

Table S4181.  Gene #380: 'ARHGEF10 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ARHGEF10 MUTATED 4 4 13
ARHGEF10 WILD-TYPE 85 156 125

Figure S1309.  Get High-res Image Gene #380: 'ARHGEF10 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'ARHGEF10 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.795 (Fisher's exact test), Q value = 1

Table S4182.  Gene #380: 'ARHGEF10 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ARHGEF10 MUTATED 9 7 5
ARHGEF10 WILD-TYPE 173 126 67
'ARHGEF10 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0305 (Fisher's exact test), Q value = 0.18

Table S4183.  Gene #380: 'ARHGEF10 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ARHGEF10 MUTATED 1 7 8 8
ARHGEF10 WILD-TYPE 111 89 84 178

Figure S1310.  Get High-res Image Gene #380: 'ARHGEF10 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'ARHGEF10 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 6e-04 (Fisher's exact test), Q value = 0.018

Table S4184.  Gene #380: 'ARHGEF10 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ARHGEF10 MUTATED 2 6 6 1 2 0 7
ARHGEF10 WILD-TYPE 58 44 43 39 61 125 92

Figure S1311.  Get High-res Image Gene #380: 'ARHGEF10 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ARHGEF10 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.147 (Fisher's exact test), Q value = 0.43

Table S4185.  Gene #380: 'ARHGEF10 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ARHGEF10 MUTATED 8 5 0 11
ARHGEF10 WILD-TYPE 122 73 68 185
'ARHGEF10 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00994 (Fisher's exact test), Q value = 0.095

Table S4186.  Gene #380: 'ARHGEF10 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ARHGEF10 MUTATED 3 6 2 2 8 0 0 2 1
ARHGEF10 WILD-TYPE 37 56 26 78 61 48 43 26 73

Figure S1312.  Get High-res Image Gene #380: 'ARHGEF10 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'ARHGEF10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0243 (Fisher's exact test), Q value = 0.16

Table S4187.  Gene #380: 'ARHGEF10 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
ARHGEF10 MUTATED 2 0 0 3
ARHGEF10 WILD-TYPE 31 31 27 16

Figure S1313.  Get High-res Image Gene #380: 'ARHGEF10 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'ARHGEF10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.268 (Fisher's exact test), Q value = 0.59

Table S4188.  Gene #380: 'ARHGEF10 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
ARHGEF10 MUTATED 5 0 0 0
ARHGEF10 WILD-TYPE 49 10 24 22
'HEPACAM2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0315 (Fisher's exact test), Q value = 0.18

Table S4189.  Gene #381: 'HEPACAM2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
HEPACAM2 MUTATED 3 0 0 1
HEPACAM2 WILD-TYPE 43 58 64 42

Figure S1314.  Get High-res Image Gene #381: 'HEPACAM2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'HEPACAM2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0395 (Fisher's exact test), Q value = 0.21

Table S4190.  Gene #381: 'HEPACAM2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
HEPACAM2 MUTATED 3 0 1
HEPACAM2 WILD-TYPE 48 83 76

Figure S1315.  Get High-res Image Gene #381: 'HEPACAM2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'HEPACAM2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0151 (Fisher's exact test), Q value = 0.12

Table S4191.  Gene #381: 'HEPACAM2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
HEPACAM2 MUTATED 10 1 2 1
HEPACAM2 WILD-TYPE 168 182 99 19

Figure S1316.  Get High-res Image Gene #381: 'HEPACAM2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'HEPACAM2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0847 (Fisher's exact test), Q value = 0.31

Table S4192.  Gene #381: 'HEPACAM2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
HEPACAM2 MUTATED 7 1 3
HEPACAM2 WILD-TYPE 80 79 97
'HEPACAM2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.114 (Fisher's exact test), Q value = 0.37

Table S4193.  Gene #381: 'HEPACAM2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
HEPACAM2 MUTATED 1 3 8
HEPACAM2 WILD-TYPE 88 157 130
'HEPACAM2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.363 (Fisher's exact test), Q value = 0.69

Table S4194.  Gene #381: 'HEPACAM2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
HEPACAM2 MUTATED 8 2 2
HEPACAM2 WILD-TYPE 174 131 70
'HEPACAM2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.114 (Fisher's exact test), Q value = 0.38

Table S4195.  Gene #381: 'HEPACAM2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
HEPACAM2 MUTATED 1 3 6 4
HEPACAM2 WILD-TYPE 111 93 86 182
'HEPACAM2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00032 (Fisher's exact test), Q value = 0.011

Table S4196.  Gene #381: 'HEPACAM2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
HEPACAM2 MUTATED 1 0 7 2 1 0 3
HEPACAM2 WILD-TYPE 59 50 42 38 62 125 96

Figure S1317.  Get High-res Image Gene #381: 'HEPACAM2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'HEPACAM2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.125 (Fisher's exact test), Q value = 0.39

Table S4197.  Gene #381: 'HEPACAM2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
HEPACAM2 MUTATED 7 3 0 4
HEPACAM2 WILD-TYPE 123 75 68 192
'HEPACAM2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.133 (Fisher's exact test), Q value = 0.41

Table S4198.  Gene #381: 'HEPACAM2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
HEPACAM2 MUTATED 0 4 0 2 5 1 2 0 0
HEPACAM2 WILD-TYPE 40 58 28 78 64 47 41 28 74
'HEPACAM2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.358 (Fisher's exact test), Q value = 0.69

Table S4199.  Gene #381: 'HEPACAM2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
HEPACAM2 MUTATED 1 1 0 2
HEPACAM2 WILD-TYPE 32 30 27 17
'HEPACAM2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.429 (Fisher's exact test), Q value = 0.76

Table S4200.  Gene #381: 'HEPACAM2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
HEPACAM2 MUTATED 4 0 0 0
HEPACAM2 WILD-TYPE 50 10 24 22
'KCNH7 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00158 (Fisher's exact test), Q value = 0.033

Table S4201.  Gene #382: 'KCNH7 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
KCNH7 MUTATED 6 0 1 5
KCNH7 WILD-TYPE 40 58 63 38

Figure S1318.  Get High-res Image Gene #382: 'KCNH7 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'KCNH7 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00481 (Fisher's exact test), Q value = 0.063

Table S4202.  Gene #382: 'KCNH7 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
KCNH7 MUTATED 8 2 2
KCNH7 WILD-TYPE 43 81 75

Figure S1319.  Get High-res Image Gene #382: 'KCNH7 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'KCNH7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0647 (Fisher's exact test), Q value = 0.28

Table S4203.  Gene #382: 'KCNH7 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
KCNH7 MUTATED 21 8 8 1
KCNH7 WILD-TYPE 157 175 93 19
'KCNH7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0338 (Fisher's exact test), Q value = 0.19

Table S4204.  Gene #382: 'KCNH7 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
KCNH7 MUTATED 14 6 5
KCNH7 WILD-TYPE 73 74 95

Figure S1320.  Get High-res Image Gene #382: 'KCNH7 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'KCNH7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0018 (Fisher's exact test), Q value = 0.035

Table S4205.  Gene #382: 'KCNH7 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
KCNH7 MUTATED 3 7 20
KCNH7 WILD-TYPE 86 153 118

Figure S1321.  Get High-res Image Gene #382: 'KCNH7 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'KCNH7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0992 (Fisher's exact test), Q value = 0.35

Table S4206.  Gene #382: 'KCNH7 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
KCNH7 MUTATED 20 7 3
KCNH7 WILD-TYPE 162 126 69
'KCNH7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.243 (Fisher's exact test), Q value = 0.57

Table S4207.  Gene #382: 'KCNH7 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
KCNH7 MUTATED 8 5 12 13
KCNH7 WILD-TYPE 104 91 80 173
'KCNH7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0053 (Fisher's exact test), Q value = 0.066

Table S4208.  Gene #382: 'KCNH7 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
KCNH7 MUTATED 6 2 8 2 7 2 11
KCNH7 WILD-TYPE 54 48 41 38 56 123 88

Figure S1322.  Get High-res Image Gene #382: 'KCNH7 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'KCNH7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.433 (Fisher's exact test), Q value = 0.76

Table S4209.  Gene #382: 'KCNH7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
KCNH7 MUTATED 12 8 6 11
KCNH7 WILD-TYPE 118 70 62 185
'KCNH7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0199 (Fisher's exact test), Q value = 0.14

Table S4210.  Gene #382: 'KCNH7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
KCNH7 MUTATED 5 10 0 4 9 1 4 0 4
KCNH7 WILD-TYPE 35 52 28 76 60 47 39 28 70

Figure S1323.  Get High-res Image Gene #382: 'KCNH7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'KCNH7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.274 (Fisher's exact test), Q value = 0.6

Table S4211.  Gene #382: 'KCNH7 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
KCNH7 MUTATED 2 5 1 3
KCNH7 WILD-TYPE 31 26 26 16
'KCNH7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.26 (Fisher's exact test), Q value = 0.58

Table S4212.  Gene #382: 'KCNH7 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
KCNH7 MUTATED 9 0 1 1
KCNH7 WILD-TYPE 45 10 23 21
'AGBL2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00354 (Fisher's exact test), Q value = 0.054

Table S4213.  Gene #383: 'AGBL2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
AGBL2 MUTATED 1 0 0 4
AGBL2 WILD-TYPE 45 58 64 39

Figure S1324.  Get High-res Image Gene #383: 'AGBL2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'AGBL2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S4214.  Gene #383: 'AGBL2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
AGBL2 MUTATED 1 2 2
AGBL2 WILD-TYPE 50 81 75
'AGBL2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0458 (Fisher's exact test), Q value = 0.23

Table S4215.  Gene #383: 'AGBL2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
AGBL2 MUTATED 11 2 2 0
AGBL2 WILD-TYPE 167 181 99 20

Figure S1325.  Get High-res Image Gene #383: 'AGBL2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'AGBL2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.12 (Fisher's exact test), Q value = 0.39

Table S4216.  Gene #383: 'AGBL2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
AGBL2 MUTATED 2 1 7
AGBL2 WILD-TYPE 85 79 93
'AGBL2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.506 (Fisher's exact test), Q value = 0.83

Table S4217.  Gene #383: 'AGBL2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
AGBL2 MUTATED 1 6 3
AGBL2 WILD-TYPE 88 154 135
'AGBL2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.15 (Fisher's exact test), Q value = 0.43

Table S4218.  Gene #383: 'AGBL2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
AGBL2 MUTATED 4 6 0
AGBL2 WILD-TYPE 178 127 72
'AGBL2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.181 (Fisher's exact test), Q value = 0.48

Table S4219.  Gene #383: 'AGBL2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
AGBL2 MUTATED 1 6 3 5
AGBL2 WILD-TYPE 111 90 89 181
'AGBL2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0477 (Fisher's exact test), Q value = 0.23

Table S4220.  Gene #383: 'AGBL2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
AGBL2 MUTATED 2 3 5 1 0 2 2
AGBL2 WILD-TYPE 58 47 44 39 63 123 97

Figure S1326.  Get High-res Image Gene #383: 'AGBL2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'AGBL2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0273 (Fisher's exact test), Q value = 0.17

Table S4221.  Gene #383: 'AGBL2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
AGBL2 MUTATED 8 0 0 5
AGBL2 WILD-TYPE 122 78 68 191

Figure S1327.  Get High-res Image Gene #383: 'AGBL2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'AGBL2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.84 (Fisher's exact test), Q value = 1

Table S4222.  Gene #383: 'AGBL2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
AGBL2 MUTATED 2 2 1 3 3 1 0 0 1
AGBL2 WILD-TYPE 38 60 27 77 66 47 43 28 73
'ACP6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.626 (Fisher's exact test), Q value = 0.92

Table S4223.  Gene #384: 'ACP6 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ACP6 MUTATED 3 1 2 0
ACP6 WILD-TYPE 175 182 99 20
'ACP6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.682 (Fisher's exact test), Q value = 0.96

Table S4224.  Gene #384: 'ACP6 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ACP6 MUTATED 3 1 2
ACP6 WILD-TYPE 84 79 98
'ACP6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.829 (Fisher's exact test), Q value = 1

Table S4225.  Gene #384: 'ACP6 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ACP6 MUTATED 1 1 2
ACP6 WILD-TYPE 88 159 136
'ACP6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.136 (Fisher's exact test), Q value = 0.41

Table S4226.  Gene #384: 'ACP6 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ACP6 MUTATED 2 0 2
ACP6 WILD-TYPE 180 133 70
'ACP6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.11 (Fisher's exact test), Q value = 0.37

Table S4227.  Gene #384: 'ACP6 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ACP6 MUTATED 2 2 2 0
ACP6 WILD-TYPE 110 94 90 186
'ACP6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0212 (Fisher's exact test), Q value = 0.15

Table S4228.  Gene #384: 'ACP6 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ACP6 MUTATED 1 0 2 2 1 0 0
ACP6 WILD-TYPE 59 50 47 38 62 125 99

Figure S1328.  Get High-res Image Gene #384: 'ACP6 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ACP6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.248 (Fisher's exact test), Q value = 0.57

Table S4229.  Gene #384: 'ACP6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ACP6 MUTATED 3 2 0 1
ACP6 WILD-TYPE 127 76 68 195
'ACP6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.766 (Fisher's exact test), Q value = 1

Table S4230.  Gene #384: 'ACP6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ACP6 MUTATED 1 0 0 2 1 1 1 0 0
ACP6 WILD-TYPE 39 62 28 78 68 47 42 28 74
'UBC MUTATION STATUS' versus 'CN_CNMF'

P value = 0.873 (Fisher's exact test), Q value = 1

Table S4231.  Gene #385: 'UBC MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
UBC MUTATED 1 3 1 0
UBC WILD-TYPE 177 180 100 20
'UBC MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.164 (Fisher's exact test), Q value = 0.46

Table S4232.  Gene #385: 'UBC MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
UBC MUTATED 3 2 0
UBC WILD-TYPE 84 78 100
'UBC MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.372 (Fisher's exact test), Q value = 0.7

Table S4233.  Gene #385: 'UBC MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
UBC MUTATED 0 2 3
UBC WILD-TYPE 89 158 135
'UBC MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.507 (Fisher's exact test), Q value = 0.83

Table S4234.  Gene #385: 'UBC MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
UBC MUTATED 4 1 0
UBC WILD-TYPE 178 132 72
'UBC MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0261 (Fisher's exact test), Q value = 0.16

Table S4235.  Gene #385: 'UBC MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
UBC MUTATED 2 0 3 0
UBC WILD-TYPE 110 96 89 186

Figure S1329.  Get High-res Image Gene #385: 'UBC MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'UBC MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0898 (Fisher's exact test), Q value = 0.33

Table S4236.  Gene #385: 'UBC MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
UBC MUTATED 1 1 0 1 2 0 0
UBC WILD-TYPE 59 49 49 39 61 125 99
'UBC MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0596 (Fisher's exact test), Q value = 0.27

Table S4237.  Gene #385: 'UBC MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
UBC MUTATED 3 2 0 0
UBC WILD-TYPE 127 76 68 196
'UBC MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.266 (Fisher's exact test), Q value = 0.59

Table S4238.  Gene #385: 'UBC MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
UBC MUTATED 1 2 0 0 0 1 1 0 0
UBC WILD-TYPE 39 60 28 80 69 47 42 28 74
'BRCA2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.149 (Fisher's exact test), Q value = 0.43

Table S4239.  Gene #386: 'BRCA2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
BRCA2 MUTATED 2 1 2 5
BRCA2 WILD-TYPE 44 57 62 38
'BRCA2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.506 (Fisher's exact test), Q value = 0.83

Table S4240.  Gene #386: 'BRCA2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
BRCA2 MUTATED 4 3 3
BRCA2 WILD-TYPE 47 80 74
'BRCA2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00667 (Fisher's exact test), Q value = 0.075

Table S4241.  Gene #386: 'BRCA2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
BRCA2 MUTATED 33 16 9 0
BRCA2 WILD-TYPE 145 167 92 20

Figure S1330.  Get High-res Image Gene #386: 'BRCA2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'BRCA2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.271 (Fisher's exact test), Q value = 0.6

Table S4242.  Gene #386: 'BRCA2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
BRCA2 MUTATED 20 11 16
BRCA2 WILD-TYPE 67 69 84
'BRCA2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0816 (Fisher's exact test), Q value = 0.31

Table S4243.  Gene #386: 'BRCA2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
BRCA2 MUTATED 6 19 23
BRCA2 WILD-TYPE 83 141 115
'BRCA2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.739 (Fisher's exact test), Q value = 1

Table S4244.  Gene #386: 'BRCA2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
BRCA2 MUTATED 25 16 7
BRCA2 WILD-TYPE 157 117 65
'BRCA2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00645 (Fisher's exact test), Q value = 0.074

Table S4245.  Gene #386: 'BRCA2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
BRCA2 MUTATED 14 13 19 12
BRCA2 WILD-TYPE 98 83 73 174

Figure S1331.  Get High-res Image Gene #386: 'BRCA2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'BRCA2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 4e-05 (Fisher's exact test), Q value = 0.0027

Table S4246.  Gene #386: 'BRCA2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
BRCA2 MUTATED 11 9 15 5 7 4 7
BRCA2 WILD-TYPE 49 41 34 35 56 121 92

Figure S1332.  Get High-res Image Gene #386: 'BRCA2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'BRCA2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00199 (Fisher's exact test), Q value = 0.037

Table S4247.  Gene #386: 'BRCA2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
BRCA2 MUTATED 27 11 5 14
BRCA2 WILD-TYPE 103 67 63 182

Figure S1333.  Get High-res Image Gene #386: 'BRCA2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'BRCA2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00447 (Fisher's exact test), Q value = 0.061

Table S4248.  Gene #386: 'BRCA2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
BRCA2 MUTATED 5 12 6 14 10 3 5 0 2
BRCA2 WILD-TYPE 35 50 22 66 59 45 38 28 72

Figure S1334.  Get High-res Image Gene #386: 'BRCA2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'BRCA2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.126 (Fisher's exact test), Q value = 0.39

Table S4249.  Gene #386: 'BRCA2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
BRCA2 MUTATED 5 2 3 6
BRCA2 WILD-TYPE 28 29 24 13
'BRCA2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.442 (Fisher's exact test), Q value = 0.77

Table S4250.  Gene #386: 'BRCA2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
BRCA2 MUTATED 9 0 5 2
BRCA2 WILD-TYPE 45 10 19 20
'EZH2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0266 (Fisher's exact test), Q value = 0.17

Table S4251.  Gene #387: 'EZH2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
EZH2 MUTATED 3 0 0 2
EZH2 WILD-TYPE 43 58 64 41

Figure S1335.  Get High-res Image Gene #387: 'EZH2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'EZH2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0186 (Fisher's exact test), Q value = 0.14

Table S4252.  Gene #387: 'EZH2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
EZH2 MUTATED 4 1 0
EZH2 WILD-TYPE 47 82 77

Figure S1336.  Get High-res Image Gene #387: 'EZH2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'EZH2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.015 (Fisher's exact test), Q value = 0.12

Table S4253.  Gene #387: 'EZH2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
EZH2 MUTATED 27 10 8 1
EZH2 WILD-TYPE 151 173 93 19

Figure S1337.  Get High-res Image Gene #387: 'EZH2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'EZH2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.499 (Fisher's exact test), Q value = 0.83

Table S4254.  Gene #387: 'EZH2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
EZH2 MUTATED 13 10 19
EZH2 WILD-TYPE 74 70 81
'EZH2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0374 (Fisher's exact test), Q value = 0.2

Table S4255.  Gene #387: 'EZH2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
EZH2 MUTATED 4 18 21
EZH2 WILD-TYPE 85 142 117

Figure S1338.  Get High-res Image Gene #387: 'EZH2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'EZH2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.245 (Fisher's exact test), Q value = 0.57

Table S4256.  Gene #387: 'EZH2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
EZH2 MUTATED 22 17 4
EZH2 WILD-TYPE 160 116 68
'EZH2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00011 (Fisher's exact test), Q value = 0.0056

Table S4257.  Gene #387: 'EZH2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
EZH2 MUTATED 13 18 9 6
EZH2 WILD-TYPE 99 78 83 180

Figure S1339.  Get High-res Image Gene #387: 'EZH2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'EZH2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S4258.  Gene #387: 'EZH2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
EZH2 MUTATED 9 11 14 3 3 0 6
EZH2 WILD-TYPE 51 39 35 37 60 125 93

Figure S1340.  Get High-res Image Gene #387: 'EZH2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'EZH2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00031 (Fisher's exact test), Q value = 0.011

Table S4259.  Gene #387: 'EZH2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
EZH2 MUTATED 24 6 7 8
EZH2 WILD-TYPE 106 72 61 188

Figure S1341.  Get High-res Image Gene #387: 'EZH2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'EZH2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 3e-05 (Fisher's exact test), Q value = 0.0022

Table S4260.  Gene #387: 'EZH2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
EZH2 MUTATED 11 5 5 7 7 0 8 1 1
EZH2 WILD-TYPE 29 57 23 73 62 48 35 27 73

Figure S1342.  Get High-res Image Gene #387: 'EZH2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'EZH2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.208 (Fisher's exact test), Q value = 0.52

Table S4261.  Gene #387: 'EZH2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
EZH2 MUTATED 5 1 4 4
EZH2 WILD-TYPE 28 30 23 15
'EZH2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0654 (Fisher's exact test), Q value = 0.28

Table S4262.  Gene #387: 'EZH2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
EZH2 MUTATED 7 1 6 0
EZH2 WILD-TYPE 47 9 18 22
'OR5B2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.554 (Fisher's exact test), Q value = 0.87

Table S4263.  Gene #388: 'OR5B2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
OR5B2 MUTATED 7 4 3 1
OR5B2 WILD-TYPE 171 179 98 19
'OR5B2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.228 (Fisher's exact test), Q value = 0.55

Table S4264.  Gene #388: 'OR5B2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
OR5B2 MUTATED 6 5 2
OR5B2 WILD-TYPE 81 75 98
'OR5B2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.575 (Fisher's exact test), Q value = 0.88

Table S4265.  Gene #388: 'OR5B2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
OR5B2 MUTATED 2 8 4
OR5B2 WILD-TYPE 87 152 134
'OR5B2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.212 (Fisher's exact test), Q value = 0.52

Table S4266.  Gene #388: 'OR5B2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
OR5B2 MUTATED 5 8 1
OR5B2 WILD-TYPE 177 125 71
'OR5B2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.405 (Fisher's exact test), Q value = 0.73

Table S4267.  Gene #388: 'OR5B2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
OR5B2 MUTATED 5 4 3 3
OR5B2 WILD-TYPE 107 92 89 183
'OR5B2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0555 (Fisher's exact test), Q value = 0.26

Table S4268.  Gene #388: 'OR5B2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
OR5B2 MUTATED 2 4 2 1 3 0 3
OR5B2 WILD-TYPE 58 46 47 39 60 125 96
'OR5B2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.418 (Fisher's exact test), Q value = 0.75

Table S4269.  Gene #388: 'OR5B2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
OR5B2 MUTATED 4 3 4 4
OR5B2 WILD-TYPE 126 75 64 192
'OR5B2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.073 (Fisher's exact test), Q value = 0.29

Table S4270.  Gene #388: 'OR5B2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
OR5B2 MUTATED 3 3 3 0 1 1 2 0 2
OR5B2 WILD-TYPE 37 59 25 80 68 47 41 28 72
'OR5B2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.567 (Fisher's exact test), Q value = 0.87

Table S4271.  Gene #388: 'OR5B2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
OR5B2 MUTATED 3 1 2 0
OR5B2 WILD-TYPE 30 30 25 19
'OR5B2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.227 (Fisher's exact test), Q value = 0.54

Table S4272.  Gene #388: 'OR5B2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
OR5B2 MUTATED 2 2 1 1
OR5B2 WILD-TYPE 52 8 23 21
'GABRA6 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.122 (Fisher's exact test), Q value = 0.39

Table S4273.  Gene #389: 'GABRA6 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
GABRA6 MUTATED 1 1 0 3
GABRA6 WILD-TYPE 45 57 64 40
'GABRA6 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.739 (Fisher's exact test), Q value = 1

Table S4274.  Gene #389: 'GABRA6 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
GABRA6 MUTATED 2 2 1
GABRA6 WILD-TYPE 49 81 76
'GABRA6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.109 (Fisher's exact test), Q value = 0.37

Table S4275.  Gene #389: 'GABRA6 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
GABRA6 MUTATED 13 4 4 0
GABRA6 WILD-TYPE 165 179 97 20
'GABRA6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.182 (Fisher's exact test), Q value = 0.48

Table S4276.  Gene #389: 'GABRA6 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
GABRA6 MUTATED 8 2 6
GABRA6 WILD-TYPE 79 78 94
'GABRA6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.494 (Fisher's exact test), Q value = 0.82

Table S4277.  Gene #389: 'GABRA6 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
GABRA6 MUTATED 4 6 9
GABRA6 WILD-TYPE 85 154 129
'GABRA6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.86 (Fisher's exact test), Q value = 1

Table S4278.  Gene #389: 'GABRA6 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
GABRA6 MUTATED 8 7 4
GABRA6 WILD-TYPE 174 126 68
'GABRA6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.126 (Fisher's exact test), Q value = 0.39

Table S4279.  Gene #389: 'GABRA6 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
GABRA6 MUTATED 3 8 5 5
GABRA6 WILD-TYPE 109 88 87 181
'GABRA6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0384 (Fisher's exact test), Q value = 0.21

Table S4280.  Gene #389: 'GABRA6 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
GABRA6 MUTATED 1 4 5 1 4 1 5
GABRA6 WILD-TYPE 59 46 44 39 59 124 94

Figure S1343.  Get High-res Image Gene #389: 'GABRA6 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'GABRA6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.134 (Fisher's exact test), Q value = 0.41

Table S4281.  Gene #389: 'GABRA6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
GABRA6 MUTATED 8 5 0 8
GABRA6 WILD-TYPE 122 73 68 188
'GABRA6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0903 (Fisher's exact test), Q value = 0.33

Table S4282.  Gene #389: 'GABRA6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
GABRA6 MUTATED 2 5 3 3 6 0 1 0 1
GABRA6 WILD-TYPE 38 57 25 77 63 48 42 28 73
'LYST MUTATION STATUS' versus 'MRNA_CNMF'

P value = 5e-05 (Fisher's exact test), Q value = 0.0032

Table S4283.  Gene #390: 'LYST MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
LYST MUTATED 9 1 0 6
LYST WILD-TYPE 37 57 64 37

Figure S1344.  Get High-res Image Gene #390: 'LYST MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'LYST MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 3e-04 (Fisher's exact test), Q value = 0.011

Table S4284.  Gene #390: 'LYST MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
LYST MUTATED 11 3 2
LYST WILD-TYPE 40 80 75

Figure S1345.  Get High-res Image Gene #390: 'LYST MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'LYST MUTATION STATUS' versus 'CN_CNMF'

P value = 3e-05 (Fisher's exact test), Q value = 0.0022

Table S4285.  Gene #390: 'LYST MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
LYST MUTATED 30 6 4 0
LYST WILD-TYPE 148 177 97 20

Figure S1346.  Get High-res Image Gene #390: 'LYST MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'LYST MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.643 (Fisher's exact test), Q value = 0.93

Table S4286.  Gene #390: 'LYST MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
LYST MUTATED 10 6 8
LYST WILD-TYPE 77 74 92
'LYST MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.567 (Fisher's exact test), Q value = 0.87

Table S4287.  Gene #390: 'LYST MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
LYST MUTATED 6 11 14
LYST WILD-TYPE 83 149 124
'LYST MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.495 (Fisher's exact test), Q value = 0.82

Table S4288.  Gene #390: 'LYST MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
LYST MUTATED 18 9 4
LYST WILD-TYPE 164 124 68
'LYST MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.639 (Fisher's exact test), Q value = 0.93

Table S4289.  Gene #390: 'LYST MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
LYST MUTATED 7 10 9 14
LYST WILD-TYPE 105 86 83 172
'LYST MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00012 (Fisher's exact test), Q value = 0.0059

Table S4290.  Gene #390: 'LYST MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
LYST MUTATED 5 3 12 0 5 3 12
LYST WILD-TYPE 55 47 37 40 58 122 87

Figure S1347.  Get High-res Image Gene #390: 'LYST MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'LYST MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0778 (Fisher's exact test), Q value = 0.3

Table S4291.  Gene #390: 'LYST MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
LYST MUTATED 9 12 3 13
LYST WILD-TYPE 121 66 65 183
'LYST MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00116 (Fisher's exact test), Q value = 0.027

Table S4292.  Gene #390: 'LYST MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
LYST MUTATED 2 8 2 5 13 0 5 1 1
LYST WILD-TYPE 38 54 26 75 56 48 38 27 73

Figure S1348.  Get High-res Image Gene #390: 'LYST MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'LYST MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.851 (Fisher's exact test), Q value = 1

Table S4293.  Gene #390: 'LYST MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
LYST MUTATED 3 3 1 1
LYST WILD-TYPE 30 28 26 18
'LYST MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.435 (Fisher's exact test), Q value = 0.76

Table S4294.  Gene #390: 'LYST MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
LYST MUTATED 6 0 2 0
LYST WILD-TYPE 48 10 22 22
'PPP2R1A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.155 (Fisher's exact test), Q value = 0.44

Table S4295.  Gene #391: 'PPP2R1A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
PPP2R1A MUTATED 9 2 3 0
PPP2R1A WILD-TYPE 169 181 98 20
'PPP2R1A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.121 (Fisher's exact test), Q value = 0.39

Table S4296.  Gene #391: 'PPP2R1A MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
PPP2R1A MUTATED 2 1 7
PPP2R1A WILD-TYPE 85 79 93
'PPP2R1A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.199 (Fisher's exact test), Q value = 0.5

Table S4297.  Gene #391: 'PPP2R1A MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
PPP2R1A MUTATED 1 3 7
PPP2R1A WILD-TYPE 88 157 131
'PPP2R1A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.56 (Fisher's exact test), Q value = 0.87

Table S4298.  Gene #391: 'PPP2R1A MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
PPP2R1A MUTATED 7 3 1
PPP2R1A WILD-TYPE 175 130 71
'PPP2R1A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.216 (Fisher's exact test), Q value = 0.53

Table S4299.  Gene #391: 'PPP2R1A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
PPP2R1A MUTATED 1 5 4 4
PPP2R1A WILD-TYPE 111 91 88 182
'PPP2R1A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00012 (Fisher's exact test), Q value = 0.0059

Table S4300.  Gene #391: 'PPP2R1A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
PPP2R1A MUTATED 0 2 8 0 0 2 2
PPP2R1A WILD-TYPE 60 48 41 40 63 123 97

Figure S1349.  Get High-res Image Gene #391: 'PPP2R1A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'PPP2R1A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.765 (Fisher's exact test), Q value = 1

Table S4301.  Gene #391: 'PPP2R1A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
PPP2R1A MUTATED 5 3 1 5
PPP2R1A WILD-TYPE 125 75 67 191
'PPP2R1A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.173 (Fisher's exact test), Q value = 0.47

Table S4302.  Gene #391: 'PPP2R1A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
PPP2R1A MUTATED 0 3 1 1 6 0 1 0 2
PPP2R1A WILD-TYPE 40 59 27 79 63 48 42 28 72
'PPP2R1A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00481 (Fisher's exact test), Q value = 0.063

Table S4303.  Gene #391: 'PPP2R1A MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
PPP2R1A MUTATED 0 0 0 3
PPP2R1A WILD-TYPE 33 31 27 16

Figure S1350.  Get High-res Image Gene #391: 'PPP2R1A MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'PPP2R1A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S4304.  Gene #391: 'PPP2R1A MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
PPP2R1A MUTATED 2 0 1 0
PPP2R1A WILD-TYPE 52 10 23 22
'NUP54 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0519 (Fisher's exact test), Q value = 0.25

Table S4305.  Gene #392: 'NUP54 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
NUP54 MUTATED 7 2 0 1
NUP54 WILD-TYPE 171 181 101 19
'NUP54 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0779 (Fisher's exact test), Q value = 0.3

Table S4306.  Gene #392: 'NUP54 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
NUP54 MUTATED 5 0 3
NUP54 WILD-TYPE 82 80 97
'NUP54 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.715 (Fisher's exact test), Q value = 0.99

Table S4307.  Gene #392: 'NUP54 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
NUP54 MUTATED 1 5 4
NUP54 WILD-TYPE 88 155 134
'NUP54 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.301 (Fisher's exact test), Q value = 0.63

Table S4308.  Gene #392: 'NUP54 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
NUP54 MUTATED 3 6 1
NUP54 WILD-TYPE 179 127 71
'NUP54 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.496 (Fisher's exact test), Q value = 0.82

Table S4309.  Gene #392: 'NUP54 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
NUP54 MUTATED 2 4 1 3
NUP54 WILD-TYPE 110 92 91 183
'NUP54 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0483 (Fisher's exact test), Q value = 0.23

Table S4310.  Gene #392: 'NUP54 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
NUP54 MUTATED 3 2 1 2 0 0 2
NUP54 WILD-TYPE 57 48 48 38 63 125 97

Figure S1351.  Get High-res Image Gene #392: 'NUP54 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'NUP54 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.907 (Fisher's exact test), Q value = 1

Table S4311.  Gene #392: 'NUP54 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
NUP54 MUTATED 3 1 2 4
NUP54 WILD-TYPE 127 77 66 192
'NUP54 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0262 (Fisher's exact test), Q value = 0.16

Table S4312.  Gene #392: 'NUP54 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
NUP54 MUTATED 2 0 2 0 2 0 3 0 1
NUP54 WILD-TYPE 38 62 26 80 67 48 40 28 73

Figure S1352.  Get High-res Image Gene #392: 'NUP54 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'NUP54 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.695 (Fisher's exact test), Q value = 0.97

Table S4313.  Gene #392: 'NUP54 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
NUP54 MUTATED 2 1 0 1
NUP54 WILD-TYPE 31 30 27 18
'NUP54 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.871 (Fisher's exact test), Q value = 1

Table S4314.  Gene #392: 'NUP54 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
NUP54 MUTATED 3 0 1 0
NUP54 WILD-TYPE 51 10 23 22
'OR11G2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.906 (Fisher's exact test), Q value = 1

Table S4315.  Gene #393: 'OR11G2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
OR11G2 MUTATED 3 2 1 0
OR11G2 WILD-TYPE 175 181 100 20
'OR11G2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0716 (Fisher's exact test), Q value = 0.29

Table S4316.  Gene #393: 'OR11G2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
OR11G2 MUTATED 1 3 0
OR11G2 WILD-TYPE 86 77 100
'OR11G2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S4317.  Gene #393: 'OR11G2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
OR11G2 MUTATED 1 3 2
OR11G2 WILD-TYPE 88 157 136
'OR11G2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.861 (Fisher's exact test), Q value = 1

Table S4318.  Gene #393: 'OR11G2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
OR11G2 MUTATED 2 3 1
OR11G2 WILD-TYPE 180 130 71
'OR11G2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.371 (Fisher's exact test), Q value = 0.7

Table S4319.  Gene #393: 'OR11G2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
OR11G2 MUTATED 3 0 1 2
OR11G2 WILD-TYPE 109 96 91 184
'OR11G2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0519 (Fisher's exact test), Q value = 0.25

Table S4320.  Gene #393: 'OR11G2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
OR11G2 MUTATED 3 0 0 0 2 0 1
OR11G2 WILD-TYPE 57 50 49 40 61 125 98
'OR11G2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.634 (Fisher's exact test), Q value = 0.93

Table S4321.  Gene #393: 'OR11G2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
OR11G2 MUTATED 2 1 1 1
OR11G2 WILD-TYPE 128 77 67 195
'OR11G2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.66 (Fisher's exact test), Q value = 0.95

Table S4322.  Gene #393: 'OR11G2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
OR11G2 MUTATED 1 0 0 2 1 0 1 0 0
OR11G2 WILD-TYPE 39 62 28 78 68 48 42 28 74
'FUBP3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00164 (Fisher's exact test), Q value = 0.034

Table S4323.  Gene #394: 'FUBP3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
FUBP3 MUTATED 9 0 0 0
FUBP3 WILD-TYPE 169 183 101 20

Figure S1353.  Get High-res Image Gene #394: 'FUBP3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'FUBP3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.203 (Fisher's exact test), Q value = 0.51

Table S4324.  Gene #394: 'FUBP3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
FUBP3 MUTATED 3 0 4
FUBP3 WILD-TYPE 84 80 96
'FUBP3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.165 (Fisher's exact test), Q value = 0.46

Table S4325.  Gene #394: 'FUBP3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
FUBP3 MUTATED 1 1 5
FUBP3 WILD-TYPE 88 159 133
'FUBP3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.363 (Fisher's exact test), Q value = 0.69

Table S4326.  Gene #394: 'FUBP3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
FUBP3 MUTATED 5 2 0
FUBP3 WILD-TYPE 177 131 72
'FUBP3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0568 (Fisher's exact test), Q value = 0.26

Table S4327.  Gene #394: 'FUBP3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
FUBP3 MUTATED 0 3 4 2
FUBP3 WILD-TYPE 112 93 88 184
'FUBP3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00073 (Fisher's exact test), Q value = 0.02

Table S4328.  Gene #394: 'FUBP3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
FUBP3 MUTATED 0 2 5 0 0 0 2
FUBP3 WILD-TYPE 60 48 44 40 63 125 97

Figure S1354.  Get High-res Image Gene #394: 'FUBP3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'FUBP3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.307 (Fisher's exact test), Q value = 0.64

Table S4329.  Gene #394: 'FUBP3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
FUBP3 MUTATED 5 1 0 3
FUBP3 WILD-TYPE 125 77 68 193
'FUBP3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0841 (Fisher's exact test), Q value = 0.31

Table S4330.  Gene #394: 'FUBP3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
FUBP3 MUTATED 0 4 1 0 3 0 0 0 1
FUBP3 WILD-TYPE 40 58 27 80 66 48 43 28 73
'TOB1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.333 (Fisher's exact test), Q value = 0.66

Table S4331.  Gene #395: 'TOB1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
TOB1 MUTATED 5 1 2 0
TOB1 WILD-TYPE 173 182 99 20
'TOB1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.382 (Fisher's exact test), Q value = 0.71

Table S4332.  Gene #395: 'TOB1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
TOB1 MUTATED 1 1 4
TOB1 WILD-TYPE 86 79 96
'TOB1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.328 (Fisher's exact test), Q value = 0.66

Table S4333.  Gene #395: 'TOB1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
TOB1 MUTATED 1 1 4
TOB1 WILD-TYPE 88 159 134
'TOB1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.579 (Fisher's exact test), Q value = 0.88

Table S4334.  Gene #395: 'TOB1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
TOB1 MUTATED 3 3 0
TOB1 WILD-TYPE 179 130 72
'TOB1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0372 (Fisher's exact test), Q value = 0.2

Table S4335.  Gene #395: 'TOB1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
TOB1 MUTATED 1 5 0 2
TOB1 WILD-TYPE 111 91 92 184

Figure S1355.  Get High-res Image Gene #395: 'TOB1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'TOB1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0535 (Fisher's exact test), Q value = 0.25

Table S4336.  Gene #395: 'TOB1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
TOB1 MUTATED 1 3 2 0 1 0 1
TOB1 WILD-TYPE 59 47 47 40 62 125 98
'TOB1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.49 (Fisher's exact test), Q value = 0.82

Table S4337.  Gene #395: 'TOB1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
TOB1 MUTATED 4 1 0 3
TOB1 WILD-TYPE 126 77 68 193
'TOB1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.462 (Fisher's exact test), Q value = 0.79

Table S4338.  Gene #395: 'TOB1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
TOB1 MUTATED 2 1 1 1 2 0 1 0 0
TOB1 WILD-TYPE 38 61 27 79 67 48 42 28 74
'DAXX MUTATION STATUS' versus 'CN_CNMF'

P value = 0.404 (Fisher's exact test), Q value = 0.73

Table S4339.  Gene #396: 'DAXX MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
DAXX MUTATED 6 4 6 0
DAXX WILD-TYPE 172 179 95 20
'DAXX MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.334 (Fisher's exact test), Q value = 0.66

Table S4340.  Gene #396: 'DAXX MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
DAXX MUTATED 6 6 3
DAXX WILD-TYPE 81 74 97
'DAXX MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.042 (Fisher's exact test), Q value = 0.22

Table S4341.  Gene #396: 'DAXX MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
DAXX MUTATED 1 4 10
DAXX WILD-TYPE 88 156 128

Figure S1356.  Get High-res Image Gene #396: 'DAXX MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'DAXX MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.167 (Fisher's exact test), Q value = 0.46

Table S4342.  Gene #396: 'DAXX MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
DAXX MUTATED 11 3 1
DAXX WILD-TYPE 171 130 71
'DAXX MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0196 (Fisher's exact test), Q value = 0.14

Table S4343.  Gene #396: 'DAXX MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
DAXX MUTATED 6 4 5 1
DAXX WILD-TYPE 106 92 87 185

Figure S1357.  Get High-res Image Gene #396: 'DAXX MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'DAXX MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00132 (Fisher's exact test), Q value = 0.029

Table S4344.  Gene #396: 'DAXX MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
DAXX MUTATED 5 1 5 1 3 0 1
DAXX WILD-TYPE 55 49 44 39 60 125 98

Figure S1358.  Get High-res Image Gene #396: 'DAXX MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'DAXX MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00018 (Fisher's exact test), Q value = 0.0078

Table S4345.  Gene #396: 'DAXX MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
DAXX MUTATED 9 5 2 0
DAXX WILD-TYPE 121 73 66 196

Figure S1359.  Get High-res Image Gene #396: 'DAXX MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'DAXX MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.372 (Fisher's exact test), Q value = 0.7

Table S4346.  Gene #396: 'DAXX MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
DAXX MUTATED 0 5 2 3 2 1 2 0 1
DAXX WILD-TYPE 40 57 26 77 67 47 41 28 73
'DAXX MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.116 (Fisher's exact test), Q value = 0.38

Table S4347.  Gene #396: 'DAXX MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
DAXX MUTATED 0 2 2 3
DAXX WILD-TYPE 33 29 25 16
'DAXX MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.382 (Fisher's exact test), Q value = 0.71

Table S4348.  Gene #396: 'DAXX MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
DAXX MUTATED 4 0 3 0
DAXX WILD-TYPE 50 10 21 22
'MARK1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0266 (Fisher's exact test), Q value = 0.17

Table S4349.  Gene #397: 'MARK1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
MARK1 MUTATED 3 1 0 4
MARK1 WILD-TYPE 43 57 64 39

Figure S1360.  Get High-res Image Gene #397: 'MARK1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'MARK1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.131 (Fisher's exact test), Q value = 0.4

Table S4350.  Gene #397: 'MARK1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
MARK1 MUTATED 4 1 3
MARK1 WILD-TYPE 47 82 74
'MARK1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0192 (Fisher's exact test), Q value = 0.14

Table S4351.  Gene #397: 'MARK1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
MARK1 MUTATED 16 4 7 2
MARK1 WILD-TYPE 162 179 94 18

Figure S1361.  Get High-res Image Gene #397: 'MARK1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'MARK1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.508 (Fisher's exact test), Q value = 0.83

Table S4352.  Gene #397: 'MARK1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
MARK1 MUTATED 8 4 9
MARK1 WILD-TYPE 79 76 91
'MARK1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.322 (Fisher's exact test), Q value = 0.65

Table S4353.  Gene #397: 'MARK1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
MARK1 MUTATED 2 11 7
MARK1 WILD-TYPE 87 149 131
'MARK1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.318 (Fisher's exact test), Q value = 0.65

Table S4354.  Gene #397: 'MARK1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
MARK1 MUTATED 8 10 2
MARK1 WILD-TYPE 174 123 70
'MARK1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.433 (Fisher's exact test), Q value = 0.76

Table S4355.  Gene #397: 'MARK1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
MARK1 MUTATED 7 9 4 9
MARK1 WILD-TYPE 105 87 88 177
'MARK1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.35 (Fisher's exact test), Q value = 0.68

Table S4356.  Gene #397: 'MARK1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
MARK1 MUTATED 6 2 3 3 5 3 7
MARK1 WILD-TYPE 54 48 46 37 58 122 92
'MARK1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.525 (Fisher's exact test), Q value = 0.85

Table S4357.  Gene #397: 'MARK1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
MARK1 MUTATED 11 4 2 12
MARK1 WILD-TYPE 119 74 66 184
'MARK1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.305 (Fisher's exact test), Q value = 0.63

Table S4358.  Gene #397: 'MARK1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
MARK1 MUTATED 5 2 2 3 8 1 3 1 4
MARK1 WILD-TYPE 35 60 26 77 61 47 40 27 70
'MARK1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.891 (Fisher's exact test), Q value = 1

Table S4359.  Gene #397: 'MARK1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
MARK1 MUTATED 1 2 2 1
MARK1 WILD-TYPE 32 29 25 18
'MARK1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.922 (Fisher's exact test), Q value = 1

Table S4360.  Gene #397: 'MARK1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
MARK1 MUTATED 3 0 2 1
MARK1 WILD-TYPE 51 10 22 21
'USP25 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.407 (Fisher's exact test), Q value = 0.73

Table S4361.  Gene #398: 'USP25 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
USP25 MUTATED 1 0 1 2
USP25 WILD-TYPE 45 58 63 41
'USP25 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.178 (Fisher's exact test), Q value = 0.48

Table S4362.  Gene #398: 'USP25 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
USP25 MUTATED 2 0 2
USP25 WILD-TYPE 49 83 75
'USP25 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.431 (Fisher's exact test), Q value = 0.76

Table S4363.  Gene #398: 'USP25 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
USP25 MUTATED 10 10 2 0
USP25 WILD-TYPE 168 173 99 20
'USP25 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.661 (Fisher's exact test), Q value = 0.95

Table S4364.  Gene #398: 'USP25 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
USP25 MUTATED 8 5 6
USP25 WILD-TYPE 79 75 94
'USP25 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.643 (Fisher's exact test), Q value = 0.93

Table S4365.  Gene #398: 'USP25 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
USP25 MUTATED 3 10 7
USP25 WILD-TYPE 86 150 131
'USP25 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.318 (Fisher's exact test), Q value = 0.65

Table S4366.  Gene #398: 'USP25 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
USP25 MUTATED 8 10 2
USP25 WILD-TYPE 174 123 70
'USP25 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.277 (Fisher's exact test), Q value = 0.6

Table S4367.  Gene #398: 'USP25 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
USP25 MUTATED 6 5 7 5
USP25 WILD-TYPE 106 91 85 181
'USP25 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0507 (Fisher's exact test), Q value = 0.24

Table S4368.  Gene #398: 'USP25 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
USP25 MUTATED 5 4 3 1 6 2 2
USP25 WILD-TYPE 55 46 46 39 57 123 97
'USP25 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.122 (Fisher's exact test), Q value = 0.39

Table S4369.  Gene #398: 'USP25 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
USP25 MUTATED 9 6 1 6
USP25 WILD-TYPE 121 72 67 190
'USP25 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.249 (Fisher's exact test), Q value = 0.57

Table S4370.  Gene #398: 'USP25 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
USP25 MUTATED 4 6 1 4 4 1 1 0 1
USP25 WILD-TYPE 36 56 27 76 65 47 42 28 73
'USP25 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.626 (Fisher's exact test), Q value = 0.92

Table S4371.  Gene #398: 'USP25 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
USP25 MUTATED 2 2 0 1
USP25 WILD-TYPE 31 29 27 18
'USP25 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.521 (Fisher's exact test), Q value = 0.84

Table S4372.  Gene #398: 'USP25 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
USP25 MUTATED 3 1 1 0
USP25 WILD-TYPE 51 9 23 22
'TOPORS MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.091 (Fisher's exact test), Q value = 0.33

Table S4373.  Gene #399: 'TOPORS MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
TOPORS MUTATED 4 1 1 4
TOPORS WILD-TYPE 42 57 63 39
'TOPORS MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.319 (Fisher's exact test), Q value = 0.65

Table S4374.  Gene #399: 'TOPORS MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
TOPORS MUTATED 4 2 4
TOPORS WILD-TYPE 47 81 73
'TOPORS MUTATION STATUS' versus 'CN_CNMF'

P value = 0.621 (Fisher's exact test), Q value = 0.92

Table S4375.  Gene #399: 'TOPORS MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
TOPORS MUTATED 10 6 5 0
TOPORS WILD-TYPE 168 177 96 20
'TOPORS MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.812 (Fisher's exact test), Q value = 1

Table S4376.  Gene #399: 'TOPORS MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
TOPORS MUTATED 5 3 4
TOPORS WILD-TYPE 82 77 96
'TOPORS MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.435 (Fisher's exact test), Q value = 0.76

Table S4377.  Gene #399: 'TOPORS MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
TOPORS MUTATED 2 6 8
TOPORS WILD-TYPE 87 154 130
'TOPORS MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.219 (Fisher's exact test), Q value = 0.53

Table S4378.  Gene #399: 'TOPORS MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
TOPORS MUTATED 11 4 1
TOPORS WILD-TYPE 171 129 71
'TOPORS MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.392 (Fisher's exact test), Q value = 0.72

Table S4379.  Gene #399: 'TOPORS MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
TOPORS MUTATED 4 7 2 9
TOPORS WILD-TYPE 108 89 90 177
'TOPORS MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.117 (Fisher's exact test), Q value = 0.38

Table S4380.  Gene #399: 'TOPORS MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
TOPORS MUTATED 4 3 2 4 0 3 6
TOPORS WILD-TYPE 56 47 47 36 63 122 93
'TOPORS MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0821 (Fisher's exact test), Q value = 0.31

Table S4381.  Gene #399: 'TOPORS MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
TOPORS MUTATED 9 0 3 8
TOPORS WILD-TYPE 121 78 65 188
'TOPORS MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.26 (Fisher's exact test), Q value = 0.58

Table S4382.  Gene #399: 'TOPORS MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
TOPORS MUTATED 3 0 1 5 5 1 3 0 2
TOPORS WILD-TYPE 37 62 27 75 64 47 40 28 72
'TOPORS MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.347 (Fisher's exact test), Q value = 0.67

Table S4383.  Gene #399: 'TOPORS MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
TOPORS MUTATED 2 0 2 2
TOPORS WILD-TYPE 31 31 25 17
'TOPORS MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.157 (Fisher's exact test), Q value = 0.45

Table S4384.  Gene #399: 'TOPORS MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
TOPORS MUTATED 1 0 3 2
TOPORS WILD-TYPE 53 10 21 20
'ENPEP MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00242 (Fisher's exact test), Q value = 0.043

Table S4385.  Gene #400: 'ENPEP MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ENPEP MUTATED 4 0 0 4
ENPEP WILD-TYPE 42 58 64 39

Figure S1362.  Get High-res Image Gene #400: 'ENPEP MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'ENPEP MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.531 (Fisher's exact test), Q value = 0.85

Table S4386.  Gene #400: 'ENPEP MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ENPEP MUTATED 3 2 3
ENPEP WILD-TYPE 48 81 74
'ENPEP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00226 (Fisher's exact test), Q value = 0.041

Table S4387.  Gene #400: 'ENPEP MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ENPEP MUTATED 17 4 1 1
ENPEP WILD-TYPE 161 179 100 19

Figure S1363.  Get High-res Image Gene #400: 'ENPEP MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ENPEP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.172 (Fisher's exact test), Q value = 0.47

Table S4388.  Gene #400: 'ENPEP MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ENPEP MUTATED 8 2 5
ENPEP WILD-TYPE 79 78 95
'ENPEP MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S4389.  Gene #400: 'ENPEP MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ENPEP MUTATED 4 8 6
ENPEP WILD-TYPE 85 152 132
'ENPEP MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.695 (Fisher's exact test), Q value = 0.97

Table S4390.  Gene #400: 'ENPEP MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ENPEP MUTATED 7 7 4
ENPEP WILD-TYPE 175 126 68
'ENPEP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.293 (Fisher's exact test), Q value = 0.62

Table S4391.  Gene #400: 'ENPEP MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ENPEP MUTATED 2 6 6 9
ENPEP WILD-TYPE 110 90 86 177
'ENPEP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0917 (Fisher's exact test), Q value = 0.33

Table S4392.  Gene #400: 'ENPEP MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ENPEP MUTATED 3 4 4 2 2 1 7
ENPEP WILD-TYPE 57 46 45 38 61 124 92
'ENPEP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.528 (Fisher's exact test), Q value = 0.85

Table S4393.  Gene #400: 'ENPEP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ENPEP MUTATED 7 5 1 10
ENPEP WILD-TYPE 123 73 67 186
'ENPEP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.488 (Fisher's exact test), Q value = 0.81

Table S4394.  Gene #400: 'ENPEP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ENPEP MUTATED 3 4 1 3 7 1 2 0 2
ENPEP WILD-TYPE 37 58 27 77 62 47 41 28 72
'ENPEP MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.367 (Fisher's exact test), Q value = 0.7

Table S4395.  Gene #400: 'ENPEP MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
ENPEP MUTATED 3 2 0 2
ENPEP WILD-TYPE 30 29 27 17
'ENPEP MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.282 (Fisher's exact test), Q value = 0.61

Table S4396.  Gene #400: 'ENPEP MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
ENPEP MUTATED 6 0 0 1
ENPEP WILD-TYPE 48 10 24 21
'RING1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00471 (Fisher's exact test), Q value = 0.062

Table S4397.  Gene #401: 'RING1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
RING1 MUTATED 10 1 0 0
RING1 WILD-TYPE 168 182 101 20

Figure S1364.  Get High-res Image Gene #401: 'RING1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'RING1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0672 (Fisher's exact test), Q value = 0.28

Table S4398.  Gene #401: 'RING1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
RING1 MUTATED 4 0 6
RING1 WILD-TYPE 83 80 94
'RING1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.267 (Fisher's exact test), Q value = 0.59

Table S4399.  Gene #401: 'RING1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
RING1 MUTATED 2 2 6
RING1 WILD-TYPE 87 158 132
'RING1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.84 (Fisher's exact test), Q value = 1

Table S4400.  Gene #401: 'RING1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
RING1 MUTATED 4 4 2
RING1 WILD-TYPE 178 129 70
'RING1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0104 (Fisher's exact test), Q value = 0.098

Table S4401.  Gene #401: 'RING1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
RING1 MUTATED 1 6 3 1
RING1 WILD-TYPE 111 90 89 185

Figure S1365.  Get High-res Image Gene #401: 'RING1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'RING1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00111 (Fisher's exact test), Q value = 0.026

Table S4402.  Gene #401: 'RING1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
RING1 MUTATED 1 3 5 1 0 1 0
RING1 WILD-TYPE 59 47 44 39 63 124 99

Figure S1366.  Get High-res Image Gene #401: 'RING1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'RING1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.17 (Fisher's exact test), Q value = 0.47

Table S4403.  Gene #401: 'RING1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
RING1 MUTATED 6 2 0 3
RING1 WILD-TYPE 124 76 68 193
'RING1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.917 (Fisher's exact test), Q value = 1

Table S4404.  Gene #401: 'RING1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
RING1 MUTATED 2 1 0 2 3 1 1 0 1
RING1 WILD-TYPE 38 61 28 78 66 47 42 28 73
'RING1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.254 (Fisher's exact test), Q value = 0.58

Table S4405.  Gene #401: 'RING1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
RING1 MUTATED 2 0 0 1
RING1 WILD-TYPE 31 31 27 18
'RING1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.697 (Fisher's exact test), Q value = 0.97

Table S4406.  Gene #401: 'RING1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
RING1 MUTATED 1 0 1 1
RING1 WILD-TYPE 53 10 23 21
'NGEF MUTATION STATUS' versus 'CN_CNMF'

P value = 0.228 (Fisher's exact test), Q value = 0.55

Table S4407.  Gene #402: 'NGEF MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
NGEF MUTATED 7 4 7 0
NGEF WILD-TYPE 171 179 94 20
'NGEF MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.903 (Fisher's exact test), Q value = 1

Table S4408.  Gene #402: 'NGEF MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
NGEF MUTATED 5 6 6
NGEF WILD-TYPE 82 74 94
'NGEF MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.033 (Fisher's exact test), Q value = 0.19

Table S4409.  Gene #402: 'NGEF MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
NGEF MUTATED 0 7 9
NGEF WILD-TYPE 89 153 129

Figure S1367.  Get High-res Image Gene #402: 'NGEF MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'NGEF MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.523 (Fisher's exact test), Q value = 0.84

Table S4410.  Gene #402: 'NGEF MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
NGEF MUTATED 9 6 1
NGEF WILD-TYPE 173 127 71
'NGEF MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00874 (Fisher's exact test), Q value = 0.087

Table S4411.  Gene #402: 'NGEF MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
NGEF MUTATED 7 5 5 1
NGEF WILD-TYPE 105 91 87 185

Figure S1368.  Get High-res Image Gene #402: 'NGEF MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'NGEF MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00409 (Fisher's exact test), Q value = 0.058

Table S4412.  Gene #402: 'NGEF MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
NGEF MUTATED 5 3 4 2 3 1 0
NGEF WILD-TYPE 55 47 45 38 60 124 99

Figure S1369.  Get High-res Image Gene #402: 'NGEF MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'NGEF MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.034 (Fisher's exact test), Q value = 0.19

Table S4413.  Gene #402: 'NGEF MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
NGEF MUTATED 10 2 3 3
NGEF WILD-TYPE 120 76 65 193

Figure S1370.  Get High-res Image Gene #402: 'NGEF MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'NGEF MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0421 (Fisher's exact test), Q value = 0.22

Table S4414.  Gene #402: 'NGEF MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
NGEF MUTATED 3 3 4 0 3 2 1 1 1
NGEF WILD-TYPE 37 59 24 80 66 46 42 27 73

Figure S1371.  Get High-res Image Gene #402: 'NGEF MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'NGEF MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.23 (Fisher's exact test), Q value = 0.55

Table S4415.  Gene #402: 'NGEF MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
NGEF MUTATED 1 0 2 2
NGEF WILD-TYPE 32 31 25 17
'NGEF MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.189 (Fisher's exact test), Q value = 0.49

Table S4416.  Gene #402: 'NGEF MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
NGEF MUTATED 2 0 3 0
NGEF WILD-TYPE 52 10 21 22
'MMAA MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.193 (Fisher's exact test), Q value = 0.5

Table S4417.  Gene #403: 'MMAA MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
MMAA MUTATED 0 0 1 2
MMAA WILD-TYPE 46 58 63 41
'MMAA MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.349 (Fisher's exact test), Q value = 0.68

Table S4418.  Gene #403: 'MMAA MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
MMAA MUTATED 1 0 2
MMAA WILD-TYPE 50 83 75
'MMAA MUTATION STATUS' versus 'CN_CNMF'

P value = 0.265 (Fisher's exact test), Q value = 0.59

Table S4419.  Gene #403: 'MMAA MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
MMAA MUTATED 7 3 1 1
MMAA WILD-TYPE 171 180 100 19
'MMAA MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.399 (Fisher's exact test), Q value = 0.72

Table S4420.  Gene #403: 'MMAA MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
MMAA MUTATED 5 2 2
MMAA WILD-TYPE 82 78 98
'MMAA MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.677 (Fisher's exact test), Q value = 0.96

Table S4421.  Gene #403: 'MMAA MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
MMAA MUTATED 3 3 5
MMAA WILD-TYPE 86 157 133
'MMAA MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.465 (Fisher's exact test), Q value = 0.79

Table S4422.  Gene #403: 'MMAA MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
MMAA MUTATED 6 2 3
MMAA WILD-TYPE 176 131 69
'MMAA MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0601 (Fisher's exact test), Q value = 0.27

Table S4423.  Gene #403: 'MMAA MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
MMAA MUTATED 0 3 5 4
MMAA WILD-TYPE 112 93 87 182
'MMAA MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.328 (Fisher's exact test), Q value = 0.66

Table S4424.  Gene #403: 'MMAA MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
MMAA MUTATED 2 2 1 0 4 2 1
MMAA WILD-TYPE 58 48 48 40 59 123 98
'MMAA MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.391 (Fisher's exact test), Q value = 0.72

Table S4425.  Gene #403: 'MMAA MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
MMAA MUTATED 2 4 1 4
MMAA WILD-TYPE 128 74 67 192
'MMAA MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.627 (Fisher's exact test), Q value = 0.92

Table S4426.  Gene #403: 'MMAA MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
MMAA MUTATED 3 2 0 1 2 1 0 0 2
MMAA WILD-TYPE 37 60 28 79 67 47 43 28 72
'MMAA MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.907 (Fisher's exact test), Q value = 1

Table S4427.  Gene #403: 'MMAA MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
MMAA MUTATED 2 1 1 0
MMAA WILD-TYPE 31 30 26 19
'MMAA MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.869 (Fisher's exact test), Q value = 1

Table S4428.  Gene #403: 'MMAA MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
MMAA MUTATED 3 0 1 0
MMAA WILD-TYPE 51 10 23 22
'ZNF630 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.064 (Fisher's exact test), Q value = 0.27

Table S4429.  Gene #404: 'ZNF630 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ZNF630 MUTATED 1 0 0 2
ZNF630 WILD-TYPE 45 58 64 41
'ZNF630 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S4430.  Gene #404: 'ZNF630 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ZNF630 MUTATED 1 1 1
ZNF630 WILD-TYPE 50 82 76
'ZNF630 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.747 (Fisher's exact test), Q value = 1

Table S4431.  Gene #404: 'ZNF630 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ZNF630 MUTATED 5 3 1 0
ZNF630 WILD-TYPE 173 180 100 20
'ZNF630 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S4432.  Gene #404: 'ZNF630 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ZNF630 MUTATED 2 2 2
ZNF630 WILD-TYPE 85 78 98
'ZNF630 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.437 (Fisher's exact test), Q value = 0.76

Table S4433.  Gene #404: 'ZNF630 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ZNF630 MUTATED 0 4 3
ZNF630 WILD-TYPE 89 156 135
'ZNF630 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.886 (Fisher's exact test), Q value = 1

Table S4434.  Gene #404: 'ZNF630 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ZNF630 MUTATED 3 3 1
ZNF630 WILD-TYPE 179 130 71
'ZNF630 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.44 (Fisher's exact test), Q value = 0.77

Table S4435.  Gene #404: 'ZNF630 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ZNF630 MUTATED 2 3 0 4
ZNF630 WILD-TYPE 110 93 92 182
'ZNF630 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.932 (Fisher's exact test), Q value = 1

Table S4436.  Gene #404: 'ZNF630 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ZNF630 MUTATED 2 1 1 1 1 2 1
ZNF630 WILD-TYPE 58 49 48 39 62 123 98
'ZNF630 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.457 (Fisher's exact test), Q value = 0.78

Table S4437.  Gene #404: 'ZNF630 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ZNF630 MUTATED 2 0 1 6
ZNF630 WILD-TYPE 128 78 67 190
'ZNF630 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.605 (Fisher's exact test), Q value = 0.91

Table S4438.  Gene #404: 'ZNF630 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ZNF630 MUTATED 0 0 0 3 3 0 1 0 2
ZNF630 WILD-TYPE 40 62 28 77 66 48 42 28 72
'KIR2DL3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.978 (Fisher's exact test), Q value = 1

Table S4439.  Gene #405: 'KIR2DL3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
KIR2DL3 MUTATED 7 8 3 0
KIR2DL3 WILD-TYPE 171 175 98 20
'KIR2DL3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.489 (Fisher's exact test), Q value = 0.82

Table S4440.  Gene #405: 'KIR2DL3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
KIR2DL3 MUTATED 8 4 5
KIR2DL3 WILD-TYPE 79 76 95
'KIR2DL3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.348 (Fisher's exact test), Q value = 0.68

Table S4441.  Gene #405: 'KIR2DL3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
KIR2DL3 MUTATED 3 4 8
KIR2DL3 WILD-TYPE 86 156 130
'KIR2DL3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.302 (Fisher's exact test), Q value = 0.63

Table S4442.  Gene #405: 'KIR2DL3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
KIR2DL3 MUTATED 10 4 1
KIR2DL3 WILD-TYPE 172 129 71
'KIR2DL3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.242 (Fisher's exact test), Q value = 0.57

Table S4443.  Gene #405: 'KIR2DL3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
KIR2DL3 MUTATED 7 3 5 4
KIR2DL3 WILD-TYPE 105 93 87 182
'KIR2DL3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.144 (Fisher's exact test), Q value = 0.42

Table S4444.  Gene #405: 'KIR2DL3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
KIR2DL3 MUTATED 2 3 3 4 3 3 1
KIR2DL3 WILD-TYPE 58 47 46 36 60 122 98
'KIR2DL3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0342 (Fisher's exact test), Q value = 0.19

Table S4445.  Gene #405: 'KIR2DL3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
KIR2DL3 MUTATED 7 7 1 4
KIR2DL3 WILD-TYPE 123 71 67 192

Figure S1372.  Get High-res Image Gene #405: 'KIR2DL3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'KIR2DL3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.235 (Fisher's exact test), Q value = 0.56

Table S4446.  Gene #405: 'KIR2DL3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
KIR2DL3 MUTATED 4 4 0 5 1 0 2 1 2
KIR2DL3 WILD-TYPE 36 58 28 75 68 48 41 27 72
'KIR2DL3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.207 (Fisher's exact test), Q value = 0.51

Table S4447.  Gene #405: 'KIR2DL3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
KIR2DL3 MUTATED 0 2 0 1
KIR2DL3 WILD-TYPE 33 29 27 18
'KIR2DL3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.566 (Fisher's exact test), Q value = 0.87

Table S4448.  Gene #405: 'KIR2DL3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
KIR2DL3 MUTATED 3 0 0 0
KIR2DL3 WILD-TYPE 51 10 24 22
'SLC7A6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.135 (Fisher's exact test), Q value = 0.41

Table S4449.  Gene #406: 'SLC7A6 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
SLC7A6 MUTATED 2 1 3 1
SLC7A6 WILD-TYPE 176 182 98 19
'SLC7A6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.504 (Fisher's exact test), Q value = 0.83

Table S4450.  Gene #406: 'SLC7A6 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
SLC7A6 MUTATED 1 2 4
SLC7A6 WILD-TYPE 86 78 96
'SLC7A6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.24 (Fisher's exact test), Q value = 0.56

Table S4451.  Gene #406: 'SLC7A6 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
SLC7A6 MUTATED 0 2 4
SLC7A6 WILD-TYPE 89 158 134
'SLC7A6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.76 (Fisher's exact test), Q value = 1

Table S4452.  Gene #406: 'SLC7A6 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
SLC7A6 MUTATED 4 1 1
SLC7A6 WILD-TYPE 178 132 71
'SLC7A6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0423 (Fisher's exact test), Q value = 0.22

Table S4453.  Gene #406: 'SLC7A6 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
SLC7A6 MUTATED 3 3 1 0
SLC7A6 WILD-TYPE 109 93 91 186

Figure S1373.  Get High-res Image Gene #406: 'SLC7A6 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'SLC7A6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0268 (Fisher's exact test), Q value = 0.17

Table S4454.  Gene #406: 'SLC7A6 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
SLC7A6 MUTATED 1 3 1 1 1 0 0
SLC7A6 WILD-TYPE 59 47 48 39 62 125 99

Figure S1374.  Get High-res Image Gene #406: 'SLC7A6 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'SLC7A6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00337 (Fisher's exact test), Q value = 0.052

Table S4455.  Gene #406: 'SLC7A6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
SLC7A6 MUTATED 6 0 1 0
SLC7A6 WILD-TYPE 124 78 67 196

Figure S1375.  Get High-res Image Gene #406: 'SLC7A6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'SLC7A6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.246 (Fisher's exact test), Q value = 0.57

Table S4456.  Gene #406: 'SLC7A6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
SLC7A6 MUTATED 1 0 2 1 1 1 1 0 0
SLC7A6 WILD-TYPE 39 62 26 79 68 47 42 28 74
'JMJD1C MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00355 (Fisher's exact test), Q value = 0.054

Table S4457.  Gene #407: 'JMJD1C MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
JMJD1C MUTATED 6 1 0 1
JMJD1C WILD-TYPE 40 57 64 42

Figure S1376.  Get High-res Image Gene #407: 'JMJD1C MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'JMJD1C MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0547 (Fisher's exact test), Q value = 0.25

Table S4458.  Gene #407: 'JMJD1C MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
JMJD1C MUTATED 3 5 0
JMJD1C WILD-TYPE 48 78 77
'JMJD1C MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0414 (Fisher's exact test), Q value = 0.21

Table S4459.  Gene #407: 'JMJD1C MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
JMJD1C MUTATED 17 6 3 1
JMJD1C WILD-TYPE 161 177 98 19

Figure S1377.  Get High-res Image Gene #407: 'JMJD1C MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'JMJD1C MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.13 (Fisher's exact test), Q value = 0.4

Table S4460.  Gene #407: 'JMJD1C MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
JMJD1C MUTATED 8 2 9
JMJD1C WILD-TYPE 79 78 91
'JMJD1C MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0432 (Fisher's exact test), Q value = 0.22

Table S4461.  Gene #407: 'JMJD1C MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
JMJD1C MUTATED 2 6 13
JMJD1C WILD-TYPE 87 154 125

Figure S1378.  Get High-res Image Gene #407: 'JMJD1C MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'JMJD1C MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0351 (Fisher's exact test), Q value = 0.19

Table S4462.  Gene #407: 'JMJD1C MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
JMJD1C MUTATED 14 7 0
JMJD1C WILD-TYPE 168 126 72

Figure S1379.  Get High-res Image Gene #407: 'JMJD1C MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'JMJD1C MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.487 (Fisher's exact test), Q value = 0.81

Table S4463.  Gene #407: 'JMJD1C MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
JMJD1C MUTATED 4 7 7 9
JMJD1C WILD-TYPE 108 89 85 177
'JMJD1C MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0239 (Fisher's exact test), Q value = 0.16

Table S4464.  Gene #407: 'JMJD1C MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
JMJD1C MUTATED 4 5 7 0 2 3 6
JMJD1C WILD-TYPE 56 45 42 40 61 122 93

Figure S1380.  Get High-res Image Gene #407: 'JMJD1C MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'JMJD1C MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.933 (Fisher's exact test), Q value = 1

Table S4465.  Gene #407: 'JMJD1C MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
JMJD1C MUTATED 8 5 3 10
JMJD1C WILD-TYPE 122 73 65 186
'JMJD1C MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.63 (Fisher's exact test), Q value = 0.93

Table S4466.  Gene #407: 'JMJD1C MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
JMJD1C MUTATED 3 4 3 3 3 1 3 3 3
JMJD1C WILD-TYPE 37 58 25 77 66 47 40 25 71
'JMJD1C MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0991 (Fisher's exact test), Q value = 0.35

Table S4467.  Gene #407: 'JMJD1C MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
JMJD1C MUTATED 4 0 2 0
JMJD1C WILD-TYPE 29 31 25 19
'JMJD1C MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S4468.  Gene #407: 'JMJD1C MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
JMJD1C MUTATED 4 0 1 1
JMJD1C WILD-TYPE 50 10 23 21
'C6ORF170 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00523 (Fisher's exact test), Q value = 0.065

Table S4469.  Gene #408: 'C6ORF170 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
C6ORF170 MUTATED 4 0 0 3
C6ORF170 WILD-TYPE 42 58 64 40

Figure S1381.  Get High-res Image Gene #408: 'C6ORF170 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'C6ORF170 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.547 (Fisher's exact test), Q value = 0.87

Table S4470.  Gene #408: 'C6ORF170 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
C6ORF170 MUTATED 3 2 2
C6ORF170 WILD-TYPE 48 81 75
'C6ORF170 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0195 (Fisher's exact test), Q value = 0.14

Table S4471.  Gene #408: 'C6ORF170 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
C6ORF170 MUTATED 14 6 1 2
C6ORF170 WILD-TYPE 164 177 100 18

Figure S1382.  Get High-res Image Gene #408: 'C6ORF170 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'C6ORF170 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.183 (Fisher's exact test), Q value = 0.48

Table S4472.  Gene #408: 'C6ORF170 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
C6ORF170 MUTATED 8 2 6
C6ORF170 WILD-TYPE 79 78 94
'C6ORF170 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.572 (Fisher's exact test), Q value = 0.88

Table S4473.  Gene #408: 'C6ORF170 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
C6ORF170 MUTATED 3 7 9
C6ORF170 WILD-TYPE 86 153 129
'C6ORF170 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.861 (Fisher's exact test), Q value = 1

Table S4474.  Gene #408: 'C6ORF170 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
C6ORF170 MUTATED 8 7 4
C6ORF170 WILD-TYPE 174 126 68
'C6ORF170 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.299 (Fisher's exact test), Q value = 0.63

Table S4475.  Gene #408: 'C6ORF170 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
C6ORF170 MUTATED 4 3 8 8
C6ORF170 WILD-TYPE 108 93 84 178
'C6ORF170 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.232 (Fisher's exact test), Q value = 0.55

Table S4476.  Gene #408: 'C6ORF170 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
C6ORF170 MUTATED 2 3 2 3 6 2 5
C6ORF170 WILD-TYPE 58 47 47 37 57 123 94
'C6ORF170 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.616 (Fisher's exact test), Q value = 0.92

Table S4477.  Gene #408: 'C6ORF170 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
C6ORF170 MUTATED 6 6 2 9
C6ORF170 WILD-TYPE 124 72 66 187
'C6ORF170 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.364 (Fisher's exact test), Q value = 0.69

Table S4478.  Gene #408: 'C6ORF170 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
C6ORF170 MUTATED 1 6 2 4 5 0 2 0 3
C6ORF170 WILD-TYPE 39 56 26 76 64 48 41 28 71
'C6ORF170 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.594 (Fisher's exact test), Q value = 0.9

Table S4479.  Gene #408: 'C6ORF170 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
C6ORF170 MUTATED 3 1 1 2
C6ORF170 WILD-TYPE 30 30 26 17
'C6ORF170 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S4480.  Gene #408: 'C6ORF170 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
C6ORF170 MUTATED 4 0 2 1
C6ORF170 WILD-TYPE 50 10 22 21
'MSH2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0361 (Fisher's exact test), Q value = 0.2

Table S4481.  Gene #409: 'MSH2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
MSH2 MUTATED 1 0 1 4
MSH2 WILD-TYPE 45 58 63 39

Figure S1383.  Get High-res Image Gene #409: 'MSH2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'MSH2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.88 (Fisher's exact test), Q value = 1

Table S4482.  Gene #409: 'MSH2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
MSH2 MUTATED 2 2 2
MSH2 WILD-TYPE 49 81 75
'MSH2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0207 (Fisher's exact test), Q value = 0.15

Table S4483.  Gene #409: 'MSH2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
MSH2 MUTATED 22 9 4 2
MSH2 WILD-TYPE 156 174 97 18

Figure S1384.  Get High-res Image Gene #409: 'MSH2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'MSH2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.189 (Fisher's exact test), Q value = 0.49

Table S4484.  Gene #409: 'MSH2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
MSH2 MUTATED 13 5 13
MSH2 WILD-TYPE 74 75 87
'MSH2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.463 (Fisher's exact test), Q value = 0.79

Table S4485.  Gene #409: 'MSH2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
MSH2 MUTATED 4 14 12
MSH2 WILD-TYPE 85 146 126
'MSH2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.699 (Fisher's exact test), Q value = 0.97

Table S4486.  Gene #409: 'MSH2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
MSH2 MUTATED 14 12 4
MSH2 WILD-TYPE 168 121 68
'MSH2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0155 (Fisher's exact test), Q value = 0.12

Table S4487.  Gene #409: 'MSH2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
MSH2 MUTATED 7 12 11 7
MSH2 WILD-TYPE 105 84 81 179

Figure S1385.  Get High-res Image Gene #409: 'MSH2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'MSH2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-04 (Fisher's exact test), Q value = 0.0052

Table S4488.  Gene #409: 'MSH2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
MSH2 MUTATED 5 9 10 3 3 2 5
MSH2 WILD-TYPE 55 41 39 37 60 123 94

Figure S1386.  Get High-res Image Gene #409: 'MSH2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'MSH2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 6e-04 (Fisher's exact test), Q value = 0.018

Table S4489.  Gene #409: 'MSH2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
MSH2 MUTATED 19 8 1 8
MSH2 WILD-TYPE 111 70 67 188

Figure S1387.  Get High-res Image Gene #409: 'MSH2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'MSH2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.334 (Fisher's exact test), Q value = 0.66

Table S4490.  Gene #409: 'MSH2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
MSH2 MUTATED 3 8 4 6 7 3 2 0 3
MSH2 WILD-TYPE 37 54 24 74 62 45 41 28 71
'MSH2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.191 (Fisher's exact test), Q value = 0.49

Table S4491.  Gene #409: 'MSH2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
MSH2 MUTATED 2 2 0 3
MSH2 WILD-TYPE 31 29 27 16
'MSH2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S4492.  Gene #409: 'MSH2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
MSH2 MUTATED 4 0 2 1
MSH2 WILD-TYPE 50 10 22 21
'EP300 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00063 (Fisher's exact test), Q value = 0.018

Table S4493.  Gene #410: 'EP300 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
EP300 MUTATED 4 1 0 7
EP300 WILD-TYPE 42 57 64 36

Figure S1388.  Get High-res Image Gene #410: 'EP300 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'EP300 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00546 (Fisher's exact test), Q value = 0.067

Table S4494.  Gene #410: 'EP300 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
EP300 MUTATED 8 2 2
EP300 WILD-TYPE 43 81 75

Figure S1389.  Get High-res Image Gene #410: 'EP300 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'EP300 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00018 (Fisher's exact test), Q value = 0.0078

Table S4495.  Gene #410: 'EP300 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
EP300 MUTATED 30 8 5 3
EP300 WILD-TYPE 148 175 96 17

Figure S1390.  Get High-res Image Gene #410: 'EP300 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'EP300 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00583 (Fisher's exact test), Q value = 0.069

Table S4496.  Gene #410: 'EP300 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
EP300 MUTATED 16 3 15
EP300 WILD-TYPE 71 77 85

Figure S1391.  Get High-res Image Gene #410: 'EP300 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'EP300 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.19 (Fisher's exact test), Q value = 0.49

Table S4497.  Gene #410: 'EP300 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
EP300 MUTATED 9 11 18
EP300 WILD-TYPE 80 149 120
'EP300 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.407 (Fisher's exact test), Q value = 0.73

Table S4498.  Gene #410: 'EP300 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
EP300 MUTATED 22 10 6
EP300 WILD-TYPE 160 123 66
'EP300 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00081 (Fisher's exact test), Q value = 0.021

Table S4499.  Gene #410: 'EP300 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
EP300 MUTATED 5 20 8 13
EP300 WILD-TYPE 107 76 84 173

Figure S1392.  Get High-res Image Gene #410: 'EP300 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'EP300 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00025 (Fisher's exact test), Q value = 0.0096

Table S4500.  Gene #410: 'EP300 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
EP300 MUTATED 3 9 9 7 6 2 10
EP300 WILD-TYPE 57 41 40 33 57 123 89

Figure S1393.  Get High-res Image Gene #410: 'EP300 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'EP300 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.244 (Fisher's exact test), Q value = 0.57

Table S4501.  Gene #410: 'EP300 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
EP300 MUTATED 18 6 4 16
EP300 WILD-TYPE 112 72 64 180
'EP300 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00143 (Fisher's exact test), Q value = 0.031

Table S4502.  Gene #410: 'EP300 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
EP300 MUTATED 7 6 2 9 13 0 4 2 1
EP300 WILD-TYPE 33 56 26 71 56 48 39 26 73

Figure S1394.  Get High-res Image Gene #410: 'EP300 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'EP300 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.014 (Fisher's exact test), Q value = 0.12

Table S4503.  Gene #410: 'EP300 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
EP300 MUTATED 2 1 5 6
EP300 WILD-TYPE 31 30 22 13

Figure S1395.  Get High-res Image Gene #410: 'EP300 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'EP300 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0447 (Fisher's exact test), Q value = 0.22

Table S4504.  Gene #410: 'EP300 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
EP300 MUTATED 4 0 7 3
EP300 WILD-TYPE 50 10 17 19

Figure S1396.  Get High-res Image Gene #410: 'EP300 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

'SKIL MUTATION STATUS' versus 'CN_CNMF'

P value = 0.883 (Fisher's exact test), Q value = 1

Table S4505.  Gene #411: 'SKIL MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
SKIL MUTATED 4 4 1 0
SKIL WILD-TYPE 174 179 100 20
'SKIL MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.496 (Fisher's exact test), Q value = 0.82

Table S4506.  Gene #411: 'SKIL MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
SKIL MUTATED 4 1 3
SKIL WILD-TYPE 83 79 97
'SKIL MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.278 (Fisher's exact test), Q value = 0.6

Table S4507.  Gene #411: 'SKIL MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
SKIL MUTATED 0 5 3
SKIL WILD-TYPE 89 155 135
'SKIL MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.16 (Fisher's exact test), Q value = 0.45

Table S4508.  Gene #411: 'SKIL MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
SKIL MUTATED 3 5 0
SKIL WILD-TYPE 179 128 72
'SKIL MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0162 (Fisher's exact test), Q value = 0.13

Table S4509.  Gene #411: 'SKIL MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
SKIL MUTATED 3 5 0 1
SKIL WILD-TYPE 109 91 92 185

Figure S1397.  Get High-res Image Gene #411: 'SKIL MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'SKIL MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00492 (Fisher's exact test), Q value = 0.063

Table S4510.  Gene #411: 'SKIL MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
SKIL MUTATED 1 3 3 0 2 0 0
SKIL WILD-TYPE 59 47 46 40 61 125 99

Figure S1398.  Get High-res Image Gene #411: 'SKIL MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'SKIL MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.128 (Fisher's exact test), Q value = 0.4

Table S4511.  Gene #411: 'SKIL MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
SKIL MUTATED 5 2 1 1
SKIL WILD-TYPE 125 76 67 195
'SKIL MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.256 (Fisher's exact test), Q value = 0.58

Table S4512.  Gene #411: 'SKIL MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
SKIL MUTATED 0 2 0 2 2 0 3 0 0
SKIL WILD-TYPE 40 60 28 78 67 48 40 28 74
'SKIL MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.306 (Fisher's exact test), Q value = 0.64

Table S4513.  Gene #411: 'SKIL MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
SKIL MUTATED 0 1 2 0
SKIL WILD-TYPE 33 30 25 19
'SKIL MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0619 (Fisher's exact test), Q value = 0.27

Table S4514.  Gene #411: 'SKIL MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
SKIL MUTATED 0 1 2 0
SKIL WILD-TYPE 54 9 22 22
'TIAL1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.016 (Fisher's exact test), Q value = 0.13

Table S4515.  Gene #412: 'TIAL1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
TIAL1 MUTATED 1 0 0 3
TIAL1 WILD-TYPE 45 58 64 40

Figure S1399.  Get High-res Image Gene #412: 'TIAL1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'TIAL1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0411 (Fisher's exact test), Q value = 0.21

Table S4516.  Gene #412: 'TIAL1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
TIAL1 MUTATED 3 0 1
TIAL1 WILD-TYPE 48 83 76

Figure S1400.  Get High-res Image Gene #412: 'TIAL1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'TIAL1 MUTATION STATUS' versus 'CN_CNMF'

P value = 5e-04 (Fisher's exact test), Q value = 0.016

Table S4517.  Gene #412: 'TIAL1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
TIAL1 MUTATED 12 0 1 0
TIAL1 WILD-TYPE 166 183 100 20

Figure S1401.  Get High-res Image Gene #412: 'TIAL1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'TIAL1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.438 (Fisher's exact test), Q value = 0.76

Table S4518.  Gene #412: 'TIAL1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
TIAL1 MUTATED 3 1 5
TIAL1 WILD-TYPE 84 79 95
'TIAL1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.927 (Fisher's exact test), Q value = 1

Table S4519.  Gene #412: 'TIAL1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
TIAL1 MUTATED 3 4 4
TIAL1 WILD-TYPE 86 156 134
'TIAL1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S4520.  Gene #412: 'TIAL1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
TIAL1 MUTATED 5 4 2
TIAL1 WILD-TYPE 177 129 70
'TIAL1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.277 (Fisher's exact test), Q value = 0.6

Table S4521.  Gene #412: 'TIAL1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
TIAL1 MUTATED 1 5 3 4
TIAL1 WILD-TYPE 111 91 89 182
'TIAL1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00114 (Fisher's exact test), Q value = 0.027

Table S4522.  Gene #412: 'TIAL1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
TIAL1 MUTATED 1 1 6 1 0 0 4
TIAL1 WILD-TYPE 59 49 43 39 63 125 95

Figure S1402.  Get High-res Image Gene #412: 'TIAL1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'TIAL1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.482 (Fisher's exact test), Q value = 0.81

Table S4523.  Gene #412: 'TIAL1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
TIAL1 MUTATED 5 2 0 6
TIAL1 WILD-TYPE 125 76 68 190
'TIAL1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.12 (Fisher's exact test), Q value = 0.39

Table S4524.  Gene #412: 'TIAL1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
TIAL1 MUTATED 1 2 1 2 6 0 1 0 0
TIAL1 WILD-TYPE 39 60 27 78 63 48 42 28 74
'OR2T33 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0269 (Fisher's exact test), Q value = 0.17

Table S4525.  Gene #413: 'OR2T33 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
OR2T33 MUTATED 3 0 0 2
OR2T33 WILD-TYPE 43 58 64 41

Figure S1403.  Get High-res Image Gene #413: 'OR2T33 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'OR2T33 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.739 (Fisher's exact test), Q value = 1

Table S4526.  Gene #413: 'OR2T33 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
OR2T33 MUTATED 2 2 1
OR2T33 WILD-TYPE 49 81 76
'OR2T33 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.283 (Fisher's exact test), Q value = 0.61

Table S4527.  Gene #413: 'OR2T33 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
OR2T33 MUTATED 10 4 3 1
OR2T33 WILD-TYPE 168 179 98 19
'OR2T33 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.431 (Fisher's exact test), Q value = 0.76

Table S4528.  Gene #413: 'OR2T33 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
OR2T33 MUTATED 6 3 3
OR2T33 WILD-TYPE 81 77 97
'OR2T33 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.644 (Fisher's exact test), Q value = 0.93

Table S4529.  Gene #413: 'OR2T33 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
OR2T33 MUTATED 4 4 6
OR2T33 WILD-TYPE 85 156 132
'OR2T33 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.821 (Fisher's exact test), Q value = 1

Table S4530.  Gene #413: 'OR2T33 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
OR2T33 MUTATED 6 6 2
OR2T33 WILD-TYPE 176 127 70
'OR2T33 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.423 (Fisher's exact test), Q value = 0.75

Table S4531.  Gene #413: 'OR2T33 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
OR2T33 MUTATED 2 5 5 6
OR2T33 WILD-TYPE 110 91 87 180
'OR2T33 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.654 (Fisher's exact test), Q value = 0.94

Table S4532.  Gene #413: 'OR2T33 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
OR2T33 MUTATED 3 3 1 2 3 2 4
OR2T33 WILD-TYPE 57 47 48 38 60 123 95
'OR2T33 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.7 (Fisher's exact test), Q value = 0.97

Table S4533.  Gene #413: 'OR2T33 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
OR2T33 MUTATED 6 2 1 9
OR2T33 WILD-TYPE 124 76 67 187
'OR2T33 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.386 (Fisher's exact test), Q value = 0.71

Table S4534.  Gene #413: 'OR2T33 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
OR2T33 MUTATED 3 2 3 3 3 0 2 0 2
OR2T33 WILD-TYPE 37 60 25 77 66 48 41 28 72
'OR2T33 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.555 (Fisher's exact test), Q value = 0.87

Table S4535.  Gene #413: 'OR2T33 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
OR2T33 MUTATED 1 2 0 0
OR2T33 WILD-TYPE 32 29 27 19
'OR2T33 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.561 (Fisher's exact test), Q value = 0.87

Table S4536.  Gene #413: 'OR2T33 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
OR2T33 MUTATED 3 0 0 0
OR2T33 WILD-TYPE 51 10 24 22
'SMC2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.205 (Fisher's exact test), Q value = 0.51

Table S4537.  Gene #414: 'SMC2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
SMC2 MUTATED 0 0 2 2
SMC2 WILD-TYPE 46 58 62 41
'SMC2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0206 (Fisher's exact test), Q value = 0.14

Table S4538.  Gene #414: 'SMC2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
SMC2 MUTATED 0 0 4
SMC2 WILD-TYPE 51 83 73

Figure S1404.  Get High-res Image Gene #414: 'SMC2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'SMC2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0459 (Fisher's exact test), Q value = 0.23

Table S4539.  Gene #414: 'SMC2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
SMC2 MUTATED 18 8 3 0
SMC2 WILD-TYPE 160 175 98 20

Figure S1405.  Get High-res Image Gene #414: 'SMC2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'SMC2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.864 (Fisher's exact test), Q value = 1

Table S4540.  Gene #414: 'SMC2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
SMC2 MUTATED 8 6 10
SMC2 WILD-TYPE 79 74 90
'SMC2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.638 (Fisher's exact test), Q value = 0.93

Table S4541.  Gene #414: 'SMC2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
SMC2 MUTATED 4 12 8
SMC2 WILD-TYPE 85 148 130
'SMC2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.429 (Fisher's exact test), Q value = 0.76

Table S4542.  Gene #414: 'SMC2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
SMC2 MUTATED 12 10 2
SMC2 WILD-TYPE 170 123 70
'SMC2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0117 (Fisher's exact test), Q value = 0.11

Table S4543.  Gene #414: 'SMC2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
SMC2 MUTATED 8 11 6 4
SMC2 WILD-TYPE 104 85 86 182

Figure S1406.  Get High-res Image Gene #414: 'SMC2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'SMC2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00015 (Fisher's exact test), Q value = 0.0069

Table S4544.  Gene #414: 'SMC2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
SMC2 MUTATED 6 8 7 2 3 1 2
SMC2 WILD-TYPE 54 42 42 38 60 124 97

Figure S1407.  Get High-res Image Gene #414: 'SMC2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'SMC2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0691 (Fisher's exact test), Q value = 0.28

Table S4545.  Gene #414: 'SMC2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
SMC2 MUTATED 14 5 3 7
SMC2 WILD-TYPE 116 73 65 189
'SMC2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.288 (Fisher's exact test), Q value = 0.62

Table S4546.  Gene #414: 'SMC2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
SMC2 MUTATED 4 2 2 4 8 4 3 0 2
SMC2 WILD-TYPE 36 60 26 76 61 44 40 28 72
'SMC2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0963 (Fisher's exact test), Q value = 0.34

Table S4547.  Gene #414: 'SMC2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
SMC2 MUTATED 1 1 2 4
SMC2 WILD-TYPE 32 30 25 15
'SMC2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.183 (Fisher's exact test), Q value = 0.48

Table S4548.  Gene #414: 'SMC2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
SMC2 MUTATED 2 0 4 2
SMC2 WILD-TYPE 52 10 20 20
'C14ORF159 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.412 (Fisher's exact test), Q value = 0.74

Table S4549.  Gene #415: 'C14ORF159 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
C14ORF159 MUTATED 5 3 1 1
C14ORF159 WILD-TYPE 173 180 100 19
'C14ORF159 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.74 (Fisher's exact test), Q value = 1

Table S4550.  Gene #415: 'C14ORF159 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
C14ORF159 MUTATED 3 3 2
C14ORF159 WILD-TYPE 84 77 98
'C14ORF159 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.177 (Fisher's exact test), Q value = 0.48

Table S4551.  Gene #415: 'C14ORF159 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
C14ORF159 MUTATED 0 3 5
C14ORF159 WILD-TYPE 89 157 133
'C14ORF159 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.565 (Fisher's exact test), Q value = 0.87

Table S4552.  Gene #415: 'C14ORF159 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
C14ORF159 MUTATED 5 3 0
C14ORF159 WILD-TYPE 177 130 72
'C14ORF159 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.239 (Fisher's exact test), Q value = 0.56

Table S4553.  Gene #415: 'C14ORF159 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
C14ORF159 MUTATED 5 1 2 2
C14ORF159 WILD-TYPE 107 95 90 184
'C14ORF159 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00015 (Fisher's exact test), Q value = 0.0069

Table S4554.  Gene #415: 'C14ORF159 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
C14ORF159 MUTATED 6 0 3 0 0 0 1
C14ORF159 WILD-TYPE 54 50 46 40 63 125 98

Figure S1408.  Get High-res Image Gene #415: 'C14ORF159 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'C14ORF159 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.58 (Fisher's exact test), Q value = 0.89

Table S4555.  Gene #415: 'C14ORF159 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
C14ORF159 MUTATED 5 1 1 3
C14ORF159 WILD-TYPE 125 77 67 193
'C14ORF159 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.497 (Fisher's exact test), Q value = 0.82

Table S4556.  Gene #415: 'C14ORF159 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
C14ORF159 MUTATED 1 2 2 1 2 1 1 0 0
C14ORF159 WILD-TYPE 39 60 26 79 67 47 42 28 74
'C14ORF159 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.782 (Fisher's exact test), Q value = 1

Table S4557.  Gene #415: 'C14ORF159 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
C14ORF159 MUTATED 1 0 1 1
C14ORF159 WILD-TYPE 32 31 26 18
'C14ORF159 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.694 (Fisher's exact test), Q value = 0.97

Table S4558.  Gene #415: 'C14ORF159 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
C14ORF159 MUTATED 1 0 1 1
C14ORF159 WILD-TYPE 53 10 23 21
'IQGAP2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.166 (Fisher's exact test), Q value = 0.46

Table S4559.  Gene #416: 'IQGAP2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
IQGAP2 MUTATED 5 2 1 2
IQGAP2 WILD-TYPE 41 56 63 41
'IQGAP2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0397 (Fisher's exact test), Q value = 0.21

Table S4560.  Gene #416: 'IQGAP2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
IQGAP2 MUTATED 6 2 2
IQGAP2 WILD-TYPE 45 81 75

Figure S1409.  Get High-res Image Gene #416: 'IQGAP2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'IQGAP2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0425 (Fisher's exact test), Q value = 0.22

Table S4561.  Gene #416: 'IQGAP2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
IQGAP2 MUTATED 17 6 3 1
IQGAP2 WILD-TYPE 161 177 98 19

Figure S1410.  Get High-res Image Gene #416: 'IQGAP2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'IQGAP2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.553 (Fisher's exact test), Q value = 0.87

Table S4562.  Gene #416: 'IQGAP2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
IQGAP2 MUTATED 7 3 6
IQGAP2 WILD-TYPE 80 77 94
'IQGAP2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.269 (Fisher's exact test), Q value = 0.59

Table S4563.  Gene #416: 'IQGAP2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
IQGAP2 MUTATED 2 8 10
IQGAP2 WILD-TYPE 87 152 128
'IQGAP2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.512 (Fisher's exact test), Q value = 0.83

Table S4564.  Gene #416: 'IQGAP2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
IQGAP2 MUTATED 9 9 2
IQGAP2 WILD-TYPE 173 124 70
'IQGAP2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.832 (Fisher's exact test), Q value = 1

Table S4565.  Gene #416: 'IQGAP2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
IQGAP2 MUTATED 6 6 6 8
IQGAP2 WILD-TYPE 106 90 86 178
'IQGAP2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.162 (Fisher's exact test), Q value = 0.45

Table S4566.  Gene #416: 'IQGAP2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
IQGAP2 MUTATED 2 2 6 4 3 3 6
IQGAP2 WILD-TYPE 58 48 43 36 60 122 93
'IQGAP2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.791 (Fisher's exact test), Q value = 1

Table S4567.  Gene #416: 'IQGAP2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
IQGAP2 MUTATED 5 5 3 12
IQGAP2 WILD-TYPE 125 73 65 184
'IQGAP2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 5e-05 (Fisher's exact test), Q value = 0.0032

Table S4568.  Gene #416: 'IQGAP2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
IQGAP2 MUTATED 0 6 3 0 11 3 1 0 1
IQGAP2 WILD-TYPE 40 56 25 80 58 45 42 28 73

Figure S1411.  Get High-res Image Gene #416: 'IQGAP2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'IQGAP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.292 (Fisher's exact test), Q value = 0.62

Table S4569.  Gene #416: 'IQGAP2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
IQGAP2 MUTATED 1 1 2 3
IQGAP2 WILD-TYPE 32 30 25 16
'IQGAP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.149 (Fisher's exact test), Q value = 0.43

Table S4570.  Gene #416: 'IQGAP2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
IQGAP2 MUTATED 3 2 2 0
IQGAP2 WILD-TYPE 51 8 22 22
'DNAH11 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.023 (Fisher's exact test), Q value = 0.15

Table S4571.  Gene #417: 'DNAH11 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
DNAH11 MUTATED 9 3 3 7
DNAH11 WILD-TYPE 37 55 61 36

Figure S1412.  Get High-res Image Gene #417: 'DNAH11 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'DNAH11 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0181 (Fisher's exact test), Q value = 0.13

Table S4572.  Gene #417: 'DNAH11 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
DNAH11 MUTATED 11 5 6
DNAH11 WILD-TYPE 40 78 71

Figure S1413.  Get High-res Image Gene #417: 'DNAH11 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'DNAH11 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0156 (Fisher's exact test), Q value = 0.12

Table S4573.  Gene #417: 'DNAH11 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
DNAH11 MUTATED 37 18 14 5
DNAH11 WILD-TYPE 141 165 87 15

Figure S1414.  Get High-res Image Gene #417: 'DNAH11 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'DNAH11 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.333 (Fisher's exact test), Q value = 0.66

Table S4574.  Gene #417: 'DNAH11 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
DNAH11 MUTATED 20 12 23
DNAH11 WILD-TYPE 67 68 77
'DNAH11 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0545 (Fisher's exact test), Q value = 0.25

Table S4575.  Gene #417: 'DNAH11 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
DNAH11 MUTATED 9 27 31
DNAH11 WILD-TYPE 80 133 107
'DNAH11 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.56 (Fisher's exact test), Q value = 0.87

Table S4576.  Gene #417: 'DNAH11 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
DNAH11 MUTATED 28 24 15
DNAH11 WILD-TYPE 154 109 57
'DNAH11 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0446 (Fisher's exact test), Q value = 0.22

Table S4577.  Gene #417: 'DNAH11 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
DNAH11 MUTATED 14 21 19 21
DNAH11 WILD-TYPE 98 75 73 165

Figure S1415.  Get High-res Image Gene #417: 'DNAH11 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'DNAH11 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00832 (Fisher's exact test), Q value = 0.085

Table S4578.  Gene #417: 'DNAH11 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
DNAH11 MUTATED 9 13 12 8 10 8 15
DNAH11 WILD-TYPE 51 37 37 32 53 117 84

Figure S1416.  Get High-res Image Gene #417: 'DNAH11 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'DNAH11 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.22 (Fisher's exact test), Q value = 0.53

Table S4579.  Gene #417: 'DNAH11 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
DNAH11 MUTATED 27 13 10 24
DNAH11 WILD-TYPE 103 65 58 172
'DNAH11 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0815 (Fisher's exact test), Q value = 0.31

Table S4580.  Gene #417: 'DNAH11 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
DNAH11 MUTATED 11 15 5 9 13 5 7 3 6
DNAH11 WILD-TYPE 29 47 23 71 56 43 36 25 68
'DNAH11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.562 (Fisher's exact test), Q value = 0.87

Table S4581.  Gene #417: 'DNAH11 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
DNAH11 MUTATED 5 4 6 5
DNAH11 WILD-TYPE 28 27 21 14
'DNAH11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.556 (Fisher's exact test), Q value = 0.87

Table S4582.  Gene #417: 'DNAH11 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
DNAH11 MUTATED 10 2 6 2
DNAH11 WILD-TYPE 44 8 18 20
'EPHA7 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0239 (Fisher's exact test), Q value = 0.16

Table S4583.  Gene #418: 'EPHA7 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
EPHA7 MUTATED 5 1 1 5
EPHA7 WILD-TYPE 41 57 63 38

Figure S1417.  Get High-res Image Gene #418: 'EPHA7 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'EPHA7 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0267 (Fisher's exact test), Q value = 0.17

Table S4584.  Gene #418: 'EPHA7 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
EPHA7 MUTATED 7 3 2
EPHA7 WILD-TYPE 44 80 75

Figure S1418.  Get High-res Image Gene #418: 'EPHA7 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'EPHA7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00431 (Fisher's exact test), Q value = 0.06

Table S4585.  Gene #418: 'EPHA7 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
EPHA7 MUTATED 24 7 7 3
EPHA7 WILD-TYPE 154 176 94 17

Figure S1419.  Get High-res Image Gene #418: 'EPHA7 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'EPHA7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00206 (Fisher's exact test), Q value = 0.038

Table S4586.  Gene #418: 'EPHA7 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
EPHA7 MUTATED 16 2 14
EPHA7 WILD-TYPE 71 78 86

Figure S1420.  Get High-res Image Gene #418: 'EPHA7 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'EPHA7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0255 (Fisher's exact test), Q value = 0.16

Table S4587.  Gene #418: 'EPHA7 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
EPHA7 MUTATED 4 10 19
EPHA7 WILD-TYPE 85 150 119

Figure S1421.  Get High-res Image Gene #418: 'EPHA7 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'EPHA7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.887 (Fisher's exact test), Q value = 1

Table S4588.  Gene #418: 'EPHA7 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
EPHA7 MUTATED 17 11 5
EPHA7 WILD-TYPE 165 122 67
'EPHA7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00416 (Fisher's exact test), Q value = 0.059

Table S4589.  Gene #418: 'EPHA7 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
EPHA7 MUTATED 4 14 13 11
EPHA7 WILD-TYPE 108 82 79 175

Figure S1422.  Get High-res Image Gene #418: 'EPHA7 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'EPHA7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00021 (Fisher's exact test), Q value = 0.0086

Table S4590.  Gene #418: 'EPHA7 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
EPHA7 MUTATED 3 7 9 8 4 2 9
EPHA7 WILD-TYPE 57 43 40 32 59 123 90

Figure S1423.  Get High-res Image Gene #418: 'EPHA7 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'EPHA7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.187 (Fisher's exact test), Q value = 0.49

Table S4591.  Gene #418: 'EPHA7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
EPHA7 MUTATED 17 7 5 12
EPHA7 WILD-TYPE 113 71 63 184
'EPHA7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00576 (Fisher's exact test), Q value = 0.069

Table S4592.  Gene #418: 'EPHA7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
EPHA7 MUTATED 9 7 3 4 10 1 4 0 3
EPHA7 WILD-TYPE 31 55 25 76 59 47 39 28 71

Figure S1424.  Get High-res Image Gene #418: 'EPHA7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'EPHA7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0563 (Fisher's exact test), Q value = 0.26

Table S4593.  Gene #418: 'EPHA7 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
EPHA7 MUTATED 4 0 3 4
EPHA7 WILD-TYPE 29 31 24 15
'EPHA7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.65 (Fisher's exact test), Q value = 0.94

Table S4594.  Gene #418: 'EPHA7 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
EPHA7 MUTATED 7 0 3 1
EPHA7 WILD-TYPE 47 10 21 21
'DNAH8 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00027 (Fisher's exact test), Q value = 0.01

Table S4595.  Gene #419: 'DNAH8 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
DNAH8 MUTATED 8 0 3 8
DNAH8 WILD-TYPE 38 58 61 35

Figure S1425.  Get High-res Image Gene #419: 'DNAH8 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'DNAH8 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0632 (Fisher's exact test), Q value = 0.27

Table S4596.  Gene #419: 'DNAH8 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
DNAH8 MUTATED 9 5 5
DNAH8 WILD-TYPE 42 78 72
'DNAH8 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00027 (Fisher's exact test), Q value = 0.01

Table S4597.  Gene #419: 'DNAH8 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
DNAH8 MUTATED 40 14 11 1
DNAH8 WILD-TYPE 138 169 90 19

Figure S1426.  Get High-res Image Gene #419: 'DNAH8 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'DNAH8 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.271 (Fisher's exact test), Q value = 0.6

Table S4598.  Gene #419: 'DNAH8 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
DNAH8 MUTATED 18 10 21
DNAH8 WILD-TYPE 69 70 79
'DNAH8 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.116 (Fisher's exact test), Q value = 0.38

Table S4599.  Gene #419: 'DNAH8 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
DNAH8 MUTATED 8 23 26
DNAH8 WILD-TYPE 81 137 112
'DNAH8 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.538 (Fisher's exact test), Q value = 0.86

Table S4600.  Gene #419: 'DNAH8 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
DNAH8 MUTATED 29 16 12
DNAH8 WILD-TYPE 153 117 60
'DNAH8 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0257 (Fisher's exact test), Q value = 0.16

Table S4601.  Gene #419: 'DNAH8 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
DNAH8 MUTATED 10 20 17 20
DNAH8 WILD-TYPE 102 76 75 166

Figure S1427.  Get High-res Image Gene #419: 'DNAH8 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'DNAH8 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00073 (Fisher's exact test), Q value = 0.02

Table S4602.  Gene #419: 'DNAH8 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
DNAH8 MUTATED 12 6 15 6 7 6 15
DNAH8 WILD-TYPE 48 44 34 34 56 119 84

Figure S1428.  Get High-res Image Gene #419: 'DNAH8 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'DNAH8 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0637 (Fisher's exact test), Q value = 0.27

Table S4603.  Gene #419: 'DNAH8 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
DNAH8 MUTATED 25 13 5 22
DNAH8 WILD-TYPE 105 65 63 174
'DNAH8 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0342 (Fisher's exact test), Q value = 0.19

Table S4604.  Gene #419: 'DNAH8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
DNAH8 MUTATED 10 8 5 9 16 3 4 5 5
DNAH8 WILD-TYPE 30 54 23 71 53 45 39 23 69

Figure S1429.  Get High-res Image Gene #419: 'DNAH8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'DNAH8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00635 (Fisher's exact test), Q value = 0.073

Table S4605.  Gene #419: 'DNAH8 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
DNAH8 MUTATED 4 2 2 8
DNAH8 WILD-TYPE 29 29 25 11

Figure S1430.  Get High-res Image Gene #419: 'DNAH8 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'DNAH8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.27 (Fisher's exact test), Q value = 0.59

Table S4606.  Gene #419: 'DNAH8 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
DNAH8 MUTATED 8 1 6 1
DNAH8 WILD-TYPE 46 9 18 21
'MACF1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 3e-05 (Fisher's exact test), Q value = 0.0022

Table S4607.  Gene #420: 'MACF1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
MACF1 MUTATED 13 0 4 7
MACF1 WILD-TYPE 33 58 60 36

Figure S1431.  Get High-res Image Gene #420: 'MACF1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'MACF1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 4e-05 (Fisher's exact test), Q value = 0.0027

Table S4608.  Gene #420: 'MACF1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
MACF1 MUTATED 15 3 6
MACF1 WILD-TYPE 36 80 71

Figure S1432.  Get High-res Image Gene #420: 'MACF1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'MACF1 MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S4609.  Gene #420: 'MACF1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
MACF1 MUTATED 46 9 8 2
MACF1 WILD-TYPE 132 174 93 18

Figure S1433.  Get High-res Image Gene #420: 'MACF1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'MACF1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0167 (Fisher's exact test), Q value = 0.13

Table S4610.  Gene #420: 'MACF1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
MACF1 MUTATED 16 5 20
MACF1 WILD-TYPE 71 75 80

Figure S1434.  Get High-res Image Gene #420: 'MACF1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'MACF1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0291 (Fisher's exact test), Q value = 0.17

Table S4611.  Gene #420: 'MACF1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
MACF1 MUTATED 9 18 29
MACF1 WILD-TYPE 80 142 109

Figure S1435.  Get High-res Image Gene #420: 'MACF1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'MACF1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.468 (Fisher's exact test), Q value = 0.79

Table S4612.  Gene #420: 'MACF1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
MACF1 MUTATED 29 20 7
MACF1 WILD-TYPE 153 113 65
'MACF1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00079 (Fisher's exact test), Q value = 0.021

Table S4613.  Gene #420: 'MACF1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
MACF1 MUTATED 4 19 17 26
MACF1 WILD-TYPE 108 77 75 160

Figure S1436.  Get High-res Image Gene #420: 'MACF1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'MACF1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S4614.  Gene #420: 'MACF1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
MACF1 MUTATED 3 8 19 6 5 5 20
MACF1 WILD-TYPE 57 42 30 34 58 120 79

Figure S1437.  Get High-res Image Gene #420: 'MACF1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'MACF1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0287 (Fisher's exact test), Q value = 0.17

Table S4615.  Gene #420: 'MACF1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
MACF1 MUTATED 21 11 2 28
MACF1 WILD-TYPE 109 67 66 168

Figure S1438.  Get High-res Image Gene #420: 'MACF1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'MACF1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00017 (Fisher's exact test), Q value = 0.0075

Table S4616.  Gene #420: 'MACF1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
MACF1 MUTATED 7 15 3 5 19 2 5 2 4
MACF1 WILD-TYPE 33 47 25 75 50 46 38 26 70

Figure S1439.  Get High-res Image Gene #420: 'MACF1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'MACF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0273 (Fisher's exact test), Q value = 0.17

Table S4617.  Gene #420: 'MACF1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
MACF1 MUTATED 2 3 1 6
MACF1 WILD-TYPE 31 28 26 13

Figure S1440.  Get High-res Image Gene #420: 'MACF1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'MACF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.828 (Fisher's exact test), Q value = 1

Table S4618.  Gene #420: 'MACF1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
MACF1 MUTATED 7 1 3 1
MACF1 WILD-TYPE 47 9 21 21
'IL1RAPL1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.061 (Fisher's exact test), Q value = 0.27

Table S4619.  Gene #421: 'IL1RAPL1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
IL1RAPL1 MUTATED 3 1 0 3
IL1RAPL1 WILD-TYPE 43 57 64 40
'IL1RAPL1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.549 (Fisher's exact test), Q value = 0.87

Table S4620.  Gene #421: 'IL1RAPL1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
IL1RAPL1 MUTATED 3 2 2
IL1RAPL1 WILD-TYPE 48 81 75
'IL1RAPL1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00898 (Fisher's exact test), Q value = 0.089

Table S4621.  Gene #421: 'IL1RAPL1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
IL1RAPL1 MUTATED 18 5 3 2
IL1RAPL1 WILD-TYPE 160 178 98 18

Figure S1441.  Get High-res Image Gene #421: 'IL1RAPL1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'IL1RAPL1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.655 (Fisher's exact test), Q value = 0.94

Table S4622.  Gene #421: 'IL1RAPL1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
IL1RAPL1 MUTATED 6 5 10
IL1RAPL1 WILD-TYPE 81 75 90
'IL1RAPL1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.041 (Fisher's exact test), Q value = 0.21

Table S4623.  Gene #421: 'IL1RAPL1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
IL1RAPL1 MUTATED 1 8 12
IL1RAPL1 WILD-TYPE 88 152 126

Figure S1442.  Get High-res Image Gene #421: 'IL1RAPL1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'IL1RAPL1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0346 (Fisher's exact test), Q value = 0.19

Table S4624.  Gene #421: 'IL1RAPL1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
IL1RAPL1 MUTATED 14 7 0
IL1RAPL1 WILD-TYPE 168 126 72

Figure S1443.  Get High-res Image Gene #421: 'IL1RAPL1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'IL1RAPL1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.374 (Fisher's exact test), Q value = 0.7

Table S4625.  Gene #421: 'IL1RAPL1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
IL1RAPL1 MUTATED 7 6 8 7
IL1RAPL1 WILD-TYPE 105 90 84 179
'IL1RAPL1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0165 (Fisher's exact test), Q value = 0.13

Table S4626.  Gene #421: 'IL1RAPL1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
IL1RAPL1 MUTATED 8 2 6 2 4 2 4
IL1RAPL1 WILD-TYPE 52 48 43 38 59 123 95

Figure S1444.  Get High-res Image Gene #421: 'IL1RAPL1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'IL1RAPL1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0319 (Fisher's exact test), Q value = 0.18

Table S4627.  Gene #421: 'IL1RAPL1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
IL1RAPL1 MUTATED 15 3 2 8
IL1RAPL1 WILD-TYPE 115 75 66 188

Figure S1445.  Get High-res Image Gene #421: 'IL1RAPL1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'IL1RAPL1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.102 (Fisher's exact test), Q value = 0.35

Table S4628.  Gene #421: 'IL1RAPL1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
IL1RAPL1 MUTATED 3 4 3 4 8 2 3 1 0
IL1RAPL1 WILD-TYPE 37 58 25 76 61 46 40 27 74
'IL1RAPL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.011 (Fisher's exact test), Q value = 0.1

Table S4629.  Gene #421: 'IL1RAPL1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
IL1RAPL1 MUTATED 1 1 1 5
IL1RAPL1 WILD-TYPE 32 30 26 14

Figure S1446.  Get High-res Image Gene #421: 'IL1RAPL1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'IL1RAPL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.694 (Fisher's exact test), Q value = 0.97

Table S4630.  Gene #421: 'IL1RAPL1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
IL1RAPL1 MUTATED 4 0 3 1
IL1RAPL1 WILD-TYPE 50 10 21 21
'WDR78 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0268 (Fisher's exact test), Q value = 0.17

Table S4631.  Gene #422: 'WDR78 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
WDR78 MUTATED 3 0 0 2
WDR78 WILD-TYPE 43 58 64 41

Figure S1447.  Get High-res Image Gene #422: 'WDR78 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'WDR78 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0452 (Fisher's exact test), Q value = 0.23

Table S4632.  Gene #422: 'WDR78 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
WDR78 MUTATED 3 0 2
WDR78 WILD-TYPE 48 83 75

Figure S1448.  Get High-res Image Gene #422: 'WDR78 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'WDR78 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.057 (Fisher's exact test), Q value = 0.26

Table S4633.  Gene #422: 'WDR78 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
WDR78 MUTATED 11 2 3 0
WDR78 WILD-TYPE 167 181 98 20
'WDR78 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.27 (Fisher's exact test), Q value = 0.6

Table S4634.  Gene #422: 'WDR78 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
WDR78 MUTATED 6 3 2
WDR78 WILD-TYPE 81 77 98
'WDR78 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.168 (Fisher's exact test), Q value = 0.46

Table S4635.  Gene #422: 'WDR78 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
WDR78 MUTATED 1 5 8
WDR78 WILD-TYPE 88 155 130
'WDR78 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.939 (Fisher's exact test), Q value = 1

Table S4636.  Gene #422: 'WDR78 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
WDR78 MUTATED 6 5 3
WDR78 WILD-TYPE 176 128 69
'WDR78 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.453 (Fisher's exact test), Q value = 0.78

Table S4637.  Gene #422: 'WDR78 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
WDR78 MUTATED 3 4 5 4
WDR78 WILD-TYPE 109 92 87 182
'WDR78 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0674 (Fisher's exact test), Q value = 0.28

Table S4638.  Gene #422: 'WDR78 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
WDR78 MUTATED 4 3 2 1 2 0 4
WDR78 WILD-TYPE 56 47 47 39 61 125 95
'WDR78 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.259 (Fisher's exact test), Q value = 0.58

Table S4639.  Gene #422: 'WDR78 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
WDR78 MUTATED 7 2 0 7
WDR78 WILD-TYPE 123 76 68 189
'WDR78 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.481 (Fisher's exact test), Q value = 0.81

Table S4640.  Gene #422: 'WDR78 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
WDR78 MUTATED 3 2 2 3 3 0 0 1 2
WDR78 WILD-TYPE 37 60 26 77 66 48 43 27 72
'TRIM13 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.443 (Fisher's exact test), Q value = 0.77

Table S4641.  Gene #423: 'TRIM13 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
TRIM13 MUTATED 2 0 1 1
TRIM13 WILD-TYPE 44 58 63 42
'TRIM13 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.179 (Fisher's exact test), Q value = 0.48

Table S4642.  Gene #423: 'TRIM13 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
TRIM13 MUTATED 2 0 2
TRIM13 WILD-TYPE 49 83 75
'TRIM13 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.316 (Fisher's exact test), Q value = 0.64

Table S4643.  Gene #423: 'TRIM13 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
TRIM13 MUTATED 4 1 3 0
TRIM13 WILD-TYPE 174 182 98 20
'TRIM13 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S4644.  Gene #423: 'TRIM13 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
TRIM13 MUTATED 1 1 2
TRIM13 WILD-TYPE 86 79 98
'TRIM13 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.295 (Fisher's exact test), Q value = 0.62

Table S4645.  Gene #423: 'TRIM13 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
TRIM13 MUTATED 0 4 1
TRIM13 WILD-TYPE 89 156 137
'TRIM13 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.593 (Fisher's exact test), Q value = 0.9

Table S4646.  Gene #423: 'TRIM13 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
TRIM13 MUTATED 2 3 0
TRIM13 WILD-TYPE 180 130 72
'TRIM13 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.358 (Fisher's exact test), Q value = 0.69

Table S4647.  Gene #423: 'TRIM13 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
TRIM13 MUTATED 1 3 0 4
TRIM13 WILD-TYPE 111 93 92 182
'TRIM13 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0518 (Fisher's exact test), Q value = 0.25

Table S4648.  Gene #423: 'TRIM13 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
TRIM13 MUTATED 1 4 0 0 0 1 2
TRIM13 WILD-TYPE 59 46 49 40 63 124 97
'TRIM13 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.34 (Fisher's exact test), Q value = 0.67

Table S4649.  Gene #423: 'TRIM13 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
TRIM13 MUTATED 4 0 0 4
TRIM13 WILD-TYPE 126 78 68 192
'TRIM13 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.223 (Fisher's exact test), Q value = 0.54

Table S4650.  Gene #423: 'TRIM13 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
TRIM13 MUTATED 0 0 2 1 3 0 1 0 1
TRIM13 WILD-TYPE 40 62 26 79 66 48 42 28 73
'OR1I1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.412 (Fisher's exact test), Q value = 0.74

Table S4651.  Gene #424: 'OR1I1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
OR1I1 MUTATED 7 3 1 0
OR1I1 WILD-TYPE 171 180 100 20
'OR1I1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0376 (Fisher's exact test), Q value = 0.2

Table S4652.  Gene #424: 'OR1I1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
OR1I1 MUTATED 6 0 3
OR1I1 WILD-TYPE 81 80 97

Figure S1449.  Get High-res Image Gene #424: 'OR1I1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'OR1I1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.774 (Fisher's exact test), Q value = 1

Table S4653.  Gene #424: 'OR1I1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
OR1I1 MUTATED 3 3 4
OR1I1 WILD-TYPE 86 157 134
'OR1I1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.114 (Fisher's exact test), Q value = 0.37

Table S4654.  Gene #424: 'OR1I1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
OR1I1 MUTATED 8 1 1
OR1I1 WILD-TYPE 174 132 71
'OR1I1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.166 (Fisher's exact test), Q value = 0.46

Table S4655.  Gene #424: 'OR1I1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
OR1I1 MUTATED 2 2 5 2
OR1I1 WILD-TYPE 110 94 87 184
'OR1I1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0296 (Fisher's exact test), Q value = 0.18

Table S4656.  Gene #424: 'OR1I1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
OR1I1 MUTATED 2 1 4 1 2 0 1
OR1I1 WILD-TYPE 58 49 45 39 61 125 98

Figure S1450.  Get High-res Image Gene #424: 'OR1I1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'OR1I1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0568 (Fisher's exact test), Q value = 0.26

Table S4657.  Gene #424: 'OR1I1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
OR1I1 MUTATED 5 4 0 2
OR1I1 WILD-TYPE 125 74 68 194
'OR1I1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0153 (Fisher's exact test), Q value = 0.12

Table S4658.  Gene #424: 'OR1I1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
OR1I1 MUTATED 1 5 2 0 2 0 1 0 0
OR1I1 WILD-TYPE 39 57 26 80 67 48 42 28 74

Figure S1451.  Get High-res Image Gene #424: 'OR1I1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'OR1I1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.872 (Fisher's exact test), Q value = 1

Table S4659.  Gene #424: 'OR1I1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
OR1I1 MUTATED 1 1 0 1
OR1I1 WILD-TYPE 32 30 27 18
'OR1I1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.563 (Fisher's exact test), Q value = 0.87

Table S4660.  Gene #424: 'OR1I1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
OR1I1 MUTATED 3 0 0 0
OR1I1 WILD-TYPE 51 10 24 22
'ACOT9 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.791 (Fisher's exact test), Q value = 1

Table S4661.  Gene #425: 'ACOT9 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ACOT9 MUTATED 3 1 1 0
ACOT9 WILD-TYPE 175 182 100 20
'ACOT9 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S4662.  Gene #425: 'ACOT9 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ACOT9 MUTATED 1 1 1
ACOT9 WILD-TYPE 86 79 99
'ACOT9 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.454 (Fisher's exact test), Q value = 0.78

Table S4663.  Gene #425: 'ACOT9 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ACOT9 MUTATED 1 2 0
ACOT9 WILD-TYPE 88 158 138
'ACOT9 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0414 (Fisher's exact test), Q value = 0.21

Table S4664.  Gene #425: 'ACOT9 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ACOT9 MUTATED 0 1 2
ACOT9 WILD-TYPE 182 132 70

Figure S1452.  Get High-res Image Gene #425: 'ACOT9 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'ACOT9 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S4665.  Gene #425: 'ACOT9 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ACOT9 MUTATED 1 1 1 2
ACOT9 WILD-TYPE 111 95 91 184
'ACOT9 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.299 (Fisher's exact test), Q value = 0.63

Table S4666.  Gene #425: 'ACOT9 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ACOT9 MUTATED 1 0 1 1 0 0 2
ACOT9 WILD-TYPE 59 50 48 39 63 125 97
'ACOT9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.506 (Fisher's exact test), Q value = 0.83

Table S4667.  Gene #425: 'ACOT9 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ACOT9 MUTATED 3 0 0 2
ACOT9 WILD-TYPE 127 78 68 194
'ACOT9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.193 (Fisher's exact test), Q value = 0.5

Table S4668.  Gene #425: 'ACOT9 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ACOT9 MUTATED 2 0 1 1 1 0 0 0 0
ACOT9 WILD-TYPE 38 62 27 79 68 48 43 28 74
'GPX6 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0645 (Fisher's exact test), Q value = 0.28

Table S4669.  Gene #426: 'GPX6 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
GPX6 MUTATED 1 0 0 2
GPX6 WILD-TYPE 45 58 64 41
'GPX6 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S4670.  Gene #426: 'GPX6 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
GPX6 MUTATED 1 1 1
GPX6 WILD-TYPE 50 82 76
'GPX6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.487 (Fisher's exact test), Q value = 0.81

Table S4671.  Gene #426: 'GPX6 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
GPX6 MUTATED 6 2 2 0
GPX6 WILD-TYPE 172 181 99 20
'GPX6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.8 (Fisher's exact test), Q value = 1

Table S4672.  Gene #426: 'GPX6 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
GPX6 MUTATED 2 3 2
GPX6 WILD-TYPE 85 77 98
'GPX6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.696 (Fisher's exact test), Q value = 0.97

Table S4673.  Gene #426: 'GPX6 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
GPX6 MUTATED 1 5 3
GPX6 WILD-TYPE 88 155 135
'GPX6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.296 (Fisher's exact test), Q value = 0.62

Table S4674.  Gene #426: 'GPX6 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
GPX6 MUTATED 4 5 0
GPX6 WILD-TYPE 178 128 72
'GPX6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.895 (Fisher's exact test), Q value = 1

Table S4675.  Gene #426: 'GPX6 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
GPX6 MUTATED 3 1 2 4
GPX6 WILD-TYPE 109 95 90 182
'GPX6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.218 (Fisher's exact test), Q value = 0.53

Table S4676.  Gene #426: 'GPX6 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
GPX6 MUTATED 1 1 2 1 1 0 4
GPX6 WILD-TYPE 59 49 47 39 62 125 95
'GPX6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.937 (Fisher's exact test), Q value = 1

Table S4677.  Gene #426: 'GPX6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
GPX6 MUTATED 2 2 1 5
GPX6 WILD-TYPE 128 76 67 191
'GPX6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.118 (Fisher's exact test), Q value = 0.38

Table S4678.  Gene #426: 'GPX6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
GPX6 MUTATED 0 2 3 0 2 1 1 0 1
GPX6 WILD-TYPE 40 60 25 80 67 47 42 28 73
'GPX6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.205 (Fisher's exact test), Q value = 0.51

Table S4679.  Gene #426: 'GPX6 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
GPX6 MUTATED 0 2 0 1
GPX6 WILD-TYPE 33 29 27 18
'GPX6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.379 (Fisher's exact test), Q value = 0.71

Table S4680.  Gene #426: 'GPX6 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
GPX6 MUTATED 2 1 0 0
GPX6 WILD-TYPE 52 9 24 22
'KIAA1797 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00125 (Fisher's exact test), Q value = 0.029

Table S4681.  Gene #427: 'KIAA1797 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
KIAA1797 MUTATED 0 1 0 5
KIAA1797 WILD-TYPE 46 57 64 38

Figure S1453.  Get High-res Image Gene #427: 'KIAA1797 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'KIAA1797 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.244 (Fisher's exact test), Q value = 0.57

Table S4682.  Gene #427: 'KIAA1797 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
KIAA1797 MUTATED 3 1 2
KIAA1797 WILD-TYPE 48 82 75
'KIAA1797 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00201 (Fisher's exact test), Q value = 0.038

Table S4683.  Gene #427: 'KIAA1797 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
KIAA1797 MUTATED 18 5 1 0
KIAA1797 WILD-TYPE 160 178 100 20

Figure S1454.  Get High-res Image Gene #427: 'KIAA1797 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'KIAA1797 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.183 (Fisher's exact test), Q value = 0.48

Table S4684.  Gene #427: 'KIAA1797 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
KIAA1797 MUTATED 7 2 9
KIAA1797 WILD-TYPE 80 78 91
'KIAA1797 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.345 (Fisher's exact test), Q value = 0.67

Table S4685.  Gene #427: 'KIAA1797 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
KIAA1797 MUTATED 3 8 11
KIAA1797 WILD-TYPE 86 152 127
'KIAA1797 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.957 (Fisher's exact test), Q value = 1

Table S4686.  Gene #427: 'KIAA1797 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
KIAA1797 MUTATED 11 7 4
KIAA1797 WILD-TYPE 171 126 68
'KIAA1797 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0376 (Fisher's exact test), Q value = 0.2

Table S4687.  Gene #427: 'KIAA1797 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
KIAA1797 MUTATED 3 9 7 5
KIAA1797 WILD-TYPE 109 87 85 181

Figure S1455.  Get High-res Image Gene #427: 'KIAA1797 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'KIAA1797 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00075 (Fisher's exact test), Q value = 0.02

Table S4688.  Gene #427: 'KIAA1797 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
KIAA1797 MUTATED 2 6 8 1 2 1 4
KIAA1797 WILD-TYPE 58 44 41 39 61 124 95

Figure S1456.  Get High-res Image Gene #427: 'KIAA1797 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'KIAA1797 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.248 (Fisher's exact test), Q value = 0.57

Table S4689.  Gene #427: 'KIAA1797 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
KIAA1797 MUTATED 10 4 2 6
KIAA1797 WILD-TYPE 120 74 66 190
'KIAA1797 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00158 (Fisher's exact test), Q value = 0.033

Table S4690.  Gene #427: 'KIAA1797 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
KIAA1797 MUTATED 5 3 4 0 6 0 2 1 1
KIAA1797 WILD-TYPE 35 59 24 80 63 48 41 27 73

Figure S1457.  Get High-res Image Gene #427: 'KIAA1797 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'KIAA1797 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0238 (Fisher's exact test), Q value = 0.16

Table S4691.  Gene #427: 'KIAA1797 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
KIAA1797 MUTATED 2 0 0 3
KIAA1797 WILD-TYPE 31 31 27 16

Figure S1458.  Get High-res Image Gene #427: 'KIAA1797 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'KIAA1797 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.892 (Fisher's exact test), Q value = 1

Table S4692.  Gene #427: 'KIAA1797 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
KIAA1797 MUTATED 2 0 2 1
KIAA1797 WILD-TYPE 52 10 22 21
'ODZ1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.127 (Fisher's exact test), Q value = 0.4

Table S4693.  Gene #428: 'ODZ1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ODZ1 MUTATED 8 4 3 5
ODZ1 WILD-TYPE 38 54 61 38
'ODZ1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.106 (Fisher's exact test), Q value = 0.36

Table S4694.  Gene #428: 'ODZ1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ODZ1 MUTATED 9 6 5
ODZ1 WILD-TYPE 42 77 72
'ODZ1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00523 (Fisher's exact test), Q value = 0.065

Table S4695.  Gene #428: 'ODZ1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ODZ1 MUTATED 40 17 16 2
ODZ1 WILD-TYPE 138 166 85 18

Figure S1459.  Get High-res Image Gene #428: 'ODZ1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ODZ1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.126 (Fisher's exact test), Q value = 0.39

Table S4696.  Gene #428: 'ODZ1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ODZ1 MUTATED 16 12 27
ODZ1 WILD-TYPE 71 68 73
'ODZ1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.509 (Fisher's exact test), Q value = 0.83

Table S4697.  Gene #428: 'ODZ1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ODZ1 MUTATED 13 24 27
ODZ1 WILD-TYPE 76 136 111
'ODZ1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.047 (Fisher's exact test), Q value = 0.23

Table S4698.  Gene #428: 'ODZ1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ODZ1 MUTATED 38 14 12
ODZ1 WILD-TYPE 144 119 60

Figure S1460.  Get High-res Image Gene #428: 'ODZ1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'ODZ1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0293 (Fisher's exact test), Q value = 0.18

Table S4699.  Gene #428: 'ODZ1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ODZ1 MUTATED 14 22 19 21
ODZ1 WILD-TYPE 98 74 73 165

Figure S1461.  Get High-res Image Gene #428: 'ODZ1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'ODZ1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S4700.  Gene #428: 'ODZ1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ODZ1 MUTATED 16 11 16 6 6 7 14
ODZ1 WILD-TYPE 44 39 33 34 57 118 85

Figure S1462.  Get High-res Image Gene #428: 'ODZ1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ODZ1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0667 (Fisher's exact test), Q value = 0.28

Table S4701.  Gene #428: 'ODZ1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ODZ1 MUTATED 31 10 8 28
ODZ1 WILD-TYPE 99 68 60 168
'ODZ1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00575 (Fisher's exact test), Q value = 0.069

Table S4702.  Gene #428: 'ODZ1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ODZ1 MUTATED 10 8 5 12 22 3 7 4 6
ODZ1 WILD-TYPE 30 54 23 68 47 45 36 24 68

Figure S1463.  Get High-res Image Gene #428: 'ODZ1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'ODZ1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.478 (Fisher's exact test), Q value = 0.81

Table S4703.  Gene #428: 'ODZ1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
ODZ1 MUTATED 7 4 3 5
ODZ1 WILD-TYPE 26 27 24 14
'ODZ1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.381 (Fisher's exact test), Q value = 0.71

Table S4704.  Gene #428: 'ODZ1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
ODZ1 MUTATED 10 0 6 3
ODZ1 WILD-TYPE 44 10 18 19
'KPNA5 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.89 (Fisher's exact test), Q value = 1

Table S4705.  Gene #429: 'KPNA5 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
KPNA5 MUTATED 0 1 1 1
KPNA5 WILD-TYPE 46 57 63 42
'KPNA5 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S4706.  Gene #429: 'KPNA5 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
KPNA5 MUTATED 1 1 1
KPNA5 WILD-TYPE 50 82 76
'KPNA5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.275 (Fisher's exact test), Q value = 0.6

Table S4707.  Gene #429: 'KPNA5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
KPNA5 MUTATED 5 6 0 0
KPNA5 WILD-TYPE 173 177 101 20
'KPNA5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.358 (Fisher's exact test), Q value = 0.69

Table S4708.  Gene #429: 'KPNA5 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
KPNA5 MUTATED 1 4 3
KPNA5 WILD-TYPE 86 76 97
'KPNA5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.694 (Fisher's exact test), Q value = 0.97

Table S4709.  Gene #429: 'KPNA5 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
KPNA5 MUTATED 1 5 3
KPNA5 WILD-TYPE 88 155 135
'KPNA5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.265 (Fisher's exact test), Q value = 0.59

Table S4710.  Gene #429: 'KPNA5 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
KPNA5 MUTATED 2 5 2
KPNA5 WILD-TYPE 180 128 70
'KPNA5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.302 (Fisher's exact test), Q value = 0.63

Table S4711.  Gene #429: 'KPNA5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
KPNA5 MUTATED 5 2 2 2
KPNA5 WILD-TYPE 107 94 90 184
'KPNA5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.207 (Fisher's exact test), Q value = 0.51

Table S4712.  Gene #429: 'KPNA5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
KPNA5 MUTATED 2 1 3 2 0 2 1
KPNA5 WILD-TYPE 58 49 46 38 63 123 98
'KPNA5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.279 (Fisher's exact test), Q value = 0.61

Table S4713.  Gene #429: 'KPNA5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
KPNA5 MUTATED 3 2 3 2
KPNA5 WILD-TYPE 127 76 65 194
'KPNA5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.113 (Fisher's exact test), Q value = 0.37

Table S4714.  Gene #429: 'KPNA5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
KPNA5 MUTATED 1 1 0 0 3 1 3 1 0
KPNA5 WILD-TYPE 39 61 28 80 66 47 40 27 74
'DMRTB1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.441 (Fisher's exact test), Q value = 0.77

Table S4715.  Gene #430: 'DMRTB1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
DMRTB1 MUTATED 4 2 0 0
DMRTB1 WILD-TYPE 174 181 101 20
'DMRTB1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.631 (Fisher's exact test), Q value = 0.93

Table S4716.  Gene #430: 'DMRTB1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
DMRTB1 MUTATED 1 1 3
DMRTB1 WILD-TYPE 86 79 97
'DMRTB1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.105 (Fisher's exact test), Q value = 0.36

Table S4717.  Gene #430: 'DMRTB1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
DMRTB1 MUTATED 2 0 3
DMRTB1 WILD-TYPE 87 160 135
'DMRTB1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.168 (Fisher's exact test), Q value = 0.46

Table S4718.  Gene #430: 'DMRTB1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
DMRTB1 MUTATED 3 0 2
DMRTB1 WILD-TYPE 179 133 70
'DMRTB1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.346 (Fisher's exact test), Q value = 0.67

Table S4719.  Gene #430: 'DMRTB1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
DMRTB1 MUTATED 0 2 2 2
DMRTB1 WILD-TYPE 112 94 90 184
'DMRTB1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0422 (Fisher's exact test), Q value = 0.22

Table S4720.  Gene #430: 'DMRTB1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
DMRTB1 MUTATED 0 0 3 1 0 2 0
DMRTB1 WILD-TYPE 60 50 46 39 63 123 99

Figure S1464.  Get High-res Image Gene #430: 'DMRTB1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'DMRTB1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.885 (Fisher's exact test), Q value = 1

Table S4721.  Gene #430: 'DMRTB1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
DMRTB1 MUTATED 2 1 0 3
DMRTB1 WILD-TYPE 128 77 68 193
'DMRTB1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.652 (Fisher's exact test), Q value = 0.94

Table S4722.  Gene #430: 'DMRTB1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
DMRTB1 MUTATED 1 2 0 0 1 0 0 0 2
DMRTB1 WILD-TYPE 39 60 28 80 68 48 43 28 72
'NUP160 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.786 (Fisher's exact test), Q value = 1

Table S4723.  Gene #431: 'NUP160 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
NUP160 MUTATED 1 0 1 1
NUP160 WILD-TYPE 45 58 63 42
'NUP160 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.184 (Fisher's exact test), Q value = 0.48

Table S4724.  Gene #431: 'NUP160 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
NUP160 MUTATED 2 0 1
NUP160 WILD-TYPE 49 83 76
'NUP160 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0629 (Fisher's exact test), Q value = 0.27

Table S4725.  Gene #431: 'NUP160 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
NUP160 MUTATED 8 1 1 0
NUP160 WILD-TYPE 170 182 100 20
'NUP160 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.892 (Fisher's exact test), Q value = 1

Table S4726.  Gene #431: 'NUP160 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
NUP160 MUTATED 3 2 2
NUP160 WILD-TYPE 84 78 98
'NUP160 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.571 (Fisher's exact test), Q value = 0.88

Table S4727.  Gene #431: 'NUP160 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
NUP160 MUTATED 3 4 2
NUP160 WILD-TYPE 86 156 136
'NUP160 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.824 (Fisher's exact test), Q value = 1

Table S4728.  Gene #431: 'NUP160 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
NUP160 MUTATED 4 4 1
NUP160 WILD-TYPE 178 129 71
'NUP160 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.506 (Fisher's exact test), Q value = 0.83

Table S4729.  Gene #431: 'NUP160 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
NUP160 MUTATED 1 4 2 4
NUP160 WILD-TYPE 111 92 90 182
'NUP160 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0295 (Fisher's exact test), Q value = 0.18

Table S4730.  Gene #431: 'NUP160 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
NUP160 MUTATED 1 1 4 0 1 0 4
NUP160 WILD-TYPE 59 49 45 40 62 125 95

Figure S1465.  Get High-res Image Gene #431: 'NUP160 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'NUP160 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.221 (Fisher's exact test), Q value = 0.53

Table S4731.  Gene #431: 'NUP160 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
NUP160 MUTATED 6 1 0 4
NUP160 WILD-TYPE 124 77 68 192
'NUP160 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0682 (Fisher's exact test), Q value = 0.28

Table S4732.  Gene #431: 'NUP160 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
NUP160 MUTATED 2 1 0 1 6 0 0 0 1
NUP160 WILD-TYPE 38 61 28 79 63 48 43 28 73
'GRIA4 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.425 (Fisher's exact test), Q value = 0.75

Table S4733.  Gene #432: 'GRIA4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
GRIA4 MUTATED 4 1 3 2
GRIA4 WILD-TYPE 42 57 61 41
'GRIA4 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.918 (Fisher's exact test), Q value = 1

Table S4734.  Gene #432: 'GRIA4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
GRIA4 MUTATED 3 4 3
GRIA4 WILD-TYPE 48 79 74
'GRIA4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.134 (Fisher's exact test), Q value = 0.41

Table S4735.  Gene #432: 'GRIA4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
GRIA4 MUTATED 15 8 11 2
GRIA4 WILD-TYPE 163 175 90 18
'GRIA4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.049 (Fisher's exact test), Q value = 0.24

Table S4736.  Gene #432: 'GRIA4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
GRIA4 MUTATED 10 11 4
GRIA4 WILD-TYPE 77 69 96

Figure S1466.  Get High-res Image Gene #432: 'GRIA4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'GRIA4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.23 (Fisher's exact test), Q value = 0.55

Table S4737.  Gene #432: 'GRIA4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
GRIA4 MUTATED 6 10 16
GRIA4 WILD-TYPE 83 150 122
'GRIA4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.54 (Fisher's exact test), Q value = 0.86

Table S4738.  Gene #432: 'GRIA4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
GRIA4 MUTATED 18 10 4
GRIA4 WILD-TYPE 164 123 68
'GRIA4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.473 (Fisher's exact test), Q value = 0.8

Table S4739.  Gene #432: 'GRIA4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
GRIA4 MUTATED 12 8 6 11
GRIA4 WILD-TYPE 100 88 86 175
'GRIA4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0243 (Fisher's exact test), Q value = 0.16

Table S4740.  Gene #432: 'GRIA4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
GRIA4 MUTATED 7 2 5 1 11 5 6
GRIA4 WILD-TYPE 53 48 44 39 52 120 93

Figure S1467.  Get High-res Image Gene #432: 'GRIA4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'GRIA4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.838 (Fisher's exact test), Q value = 1

Table S4741.  Gene #432: 'GRIA4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
GRIA4 MUTATED 10 8 5 14
GRIA4 WILD-TYPE 120 70 63 182
'GRIA4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.986 (Fisher's exact test), Q value = 1

Table S4742.  Gene #432: 'GRIA4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
GRIA4 MUTATED 2 5 2 6 6 4 5 1 6
GRIA4 WILD-TYPE 38 57 26 74 63 44 38 27 68
'GRIA4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.362 (Fisher's exact test), Q value = 0.69

Table S4743.  Gene #432: 'GRIA4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
GRIA4 MUTATED 3 4 1 0
GRIA4 WILD-TYPE 30 27 26 19
'GRIA4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.23 (Fisher's exact test), Q value = 0.55

Table S4744.  Gene #432: 'GRIA4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
GRIA4 MUTATED 3 0 1 4
GRIA4 WILD-TYPE 51 10 23 18
'FBLN5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.859 (Fisher's exact test), Q value = 1

Table S4745.  Gene #433: 'FBLN5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
FBLN5 MUTATED 3 4 3 0
FBLN5 WILD-TYPE 175 179 98 20
'FBLN5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S4746.  Gene #433: 'FBLN5 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
FBLN5 MUTATED 3 3 3
FBLN5 WILD-TYPE 84 77 97
'FBLN5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.262 (Fisher's exact test), Q value = 0.59

Table S4747.  Gene #433: 'FBLN5 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
FBLN5 MUTATED 0 5 4
FBLN5 WILD-TYPE 89 155 134
'FBLN5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.127 (Fisher's exact test), Q value = 0.4

Table S4748.  Gene #433: 'FBLN5 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
FBLN5 MUTATED 2 6 1
FBLN5 WILD-TYPE 180 127 71
'FBLN5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.131 (Fisher's exact test), Q value = 0.4

Table S4749.  Gene #433: 'FBLN5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
FBLN5 MUTATED 3 4 2 1
FBLN5 WILD-TYPE 109 92 90 185
'FBLN5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00626 (Fisher's exact test), Q value = 0.073

Table S4750.  Gene #433: 'FBLN5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
FBLN5 MUTATED 3 3 2 0 2 0 0
FBLN5 WILD-TYPE 57 47 47 40 61 125 99

Figure S1468.  Get High-res Image Gene #433: 'FBLN5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'FBLN5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0533 (Fisher's exact test), Q value = 0.25

Table S4751.  Gene #433: 'FBLN5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
FBLN5 MUTATED 5 1 3 1
FBLN5 WILD-TYPE 125 77 65 195
'FBLN5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0827 (Fisher's exact test), Q value = 0.31

Table S4752.  Gene #433: 'FBLN5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
FBLN5 MUTATED 0 2 2 0 3 1 2 0 0
FBLN5 WILD-TYPE 40 60 26 80 66 47 41 28 74
'FBLN5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.871 (Fisher's exact test), Q value = 1

Table S4753.  Gene #433: 'FBLN5 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
FBLN5 MUTATED 1 1 0 1
FBLN5 WILD-TYPE 32 30 27 18
'FBLN5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.693 (Fisher's exact test), Q value = 0.97

Table S4754.  Gene #433: 'FBLN5 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
FBLN5 MUTATED 1 0 1 1
FBLN5 WILD-TYPE 53 10 23 21
'FBXO34 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0647 (Fisher's exact test), Q value = 0.28

Table S4755.  Gene #434: 'FBXO34 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
FBXO34 MUTATED 1 0 0 2
FBXO34 WILD-TYPE 45 58 64 41
'FBXO34 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.35 (Fisher's exact test), Q value = 0.68

Table S4756.  Gene #434: 'FBXO34 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
FBXO34 MUTATED 1 0 2
FBXO34 WILD-TYPE 50 83 75
'FBXO34 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00212 (Fisher's exact test), Q value = 0.039

Table S4757.  Gene #434: 'FBXO34 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
FBXO34 MUTATED 11 1 0 0
FBXO34 WILD-TYPE 167 182 101 20

Figure S1469.  Get High-res Image Gene #434: 'FBXO34 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'FBXO34 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.437 (Fisher's exact test), Q value = 0.76

Table S4758.  Gene #434: 'FBXO34 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
FBXO34 MUTATED 3 1 5
FBXO34 WILD-TYPE 84 79 95
'FBXO34 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.716 (Fisher's exact test), Q value = 0.99

Table S4759.  Gene #434: 'FBXO34 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
FBXO34 MUTATED 1 5 4
FBXO34 WILD-TYPE 88 155 134
'FBXO34 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0123 (Fisher's exact test), Q value = 0.11

Table S4760.  Gene #434: 'FBXO34 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
FBXO34 MUTATED 2 8 0
FBXO34 WILD-TYPE 180 125 72

Figure S1470.  Get High-res Image Gene #434: 'FBXO34 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'FBXO34 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0206 (Fisher's exact test), Q value = 0.14

Table S4761.  Gene #434: 'FBXO34 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
FBXO34 MUTATED 1 7 1 3
FBXO34 WILD-TYPE 111 89 91 183

Figure S1471.  Get High-res Image Gene #434: 'FBXO34 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'FBXO34 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00851 (Fisher's exact test), Q value = 0.086

Table S4762.  Gene #434: 'FBXO34 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
FBXO34 MUTATED 2 3 4 1 0 0 2
FBXO34 WILD-TYPE 58 47 45 39 63 125 97

Figure S1472.  Get High-res Image Gene #434: 'FBXO34 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'FBXO34 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.654 (Fisher's exact test), Q value = 0.94

Table S4763.  Gene #434: 'FBXO34 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
FBXO34 MUTATED 5 1 2 4
FBXO34 WILD-TYPE 125 77 66 192
'FBXO34 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.175 (Fisher's exact test), Q value = 0.47

Table S4764.  Gene #434: 'FBXO34 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
FBXO34 MUTATED 2 1 1 0 4 0 2 1 1
FBXO34 WILD-TYPE 38 61 27 80 65 48 41 27 73
'FBXO34 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0604 (Fisher's exact test), Q value = 0.27

Table S4765.  Gene #434: 'FBXO34 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
FBXO34 MUTATED 0 0 1 2
FBXO34 WILD-TYPE 33 31 26 17
'FBXO34 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.449 (Fisher's exact test), Q value = 0.77

Table S4766.  Gene #434: 'FBXO34 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
FBXO34 MUTATED 1 0 2 0
FBXO34 WILD-TYPE 53 10 22 22
'BRCA1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00199 (Fisher's exact test), Q value = 0.037

Table S4767.  Gene #435: 'BRCA1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
BRCA1 MUTATED 5 0 0 2
BRCA1 WILD-TYPE 41 58 64 41

Figure S1473.  Get High-res Image Gene #435: 'BRCA1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'BRCA1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.123 (Fisher's exact test), Q value = 0.39

Table S4768.  Gene #435: 'BRCA1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
BRCA1 MUTATED 4 2 1
BRCA1 WILD-TYPE 47 81 76
'BRCA1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00687 (Fisher's exact test), Q value = 0.076

Table S4769.  Gene #435: 'BRCA1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
BRCA1 MUTATED 19 4 5 1
BRCA1 WILD-TYPE 159 179 96 19

Figure S1474.  Get High-res Image Gene #435: 'BRCA1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'BRCA1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.263 (Fisher's exact test), Q value = 0.59

Table S4770.  Gene #435: 'BRCA1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
BRCA1 MUTATED 7 4 12
BRCA1 WILD-TYPE 80 76 88
'BRCA1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.793 (Fisher's exact test), Q value = 1

Table S4771.  Gene #435: 'BRCA1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
BRCA1 MUTATED 4 11 8
BRCA1 WILD-TYPE 85 149 130
'BRCA1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.635 (Fisher's exact test), Q value = 0.93

Table S4772.  Gene #435: 'BRCA1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
BRCA1 MUTATED 10 10 3
BRCA1 WILD-TYPE 172 123 69
'BRCA1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.206 (Fisher's exact test), Q value = 0.51

Table S4773.  Gene #435: 'BRCA1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
BRCA1 MUTATED 5 10 6 8
BRCA1 WILD-TYPE 107 86 86 178
'BRCA1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00434 (Fisher's exact test), Q value = 0.06

Table S4774.  Gene #435: 'BRCA1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
BRCA1 MUTATED 6 3 8 2 3 1 6
BRCA1 WILD-TYPE 54 47 41 38 60 124 93

Figure S1475.  Get High-res Image Gene #435: 'BRCA1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'BRCA1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0747 (Fisher's exact test), Q value = 0.29

Table S4775.  Gene #435: 'BRCA1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
BRCA1 MUTATED 14 4 2 8
BRCA1 WILD-TYPE 116 74 66 188
'BRCA1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0195 (Fisher's exact test), Q value = 0.14

Table S4776.  Gene #435: 'BRCA1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
BRCA1 MUTATED 1 2 2 8 10 1 3 0 1
BRCA1 WILD-TYPE 39 60 26 72 59 47 40 28 73

Figure S1476.  Get High-res Image Gene #435: 'BRCA1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'BRCA1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0561 (Fisher's exact test), Q value = 0.26

Table S4777.  Gene #435: 'BRCA1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
BRCA1 MUTATED 1 0 3 3
BRCA1 WILD-TYPE 32 31 24 16
'BRCA1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.402 (Fisher's exact test), Q value = 0.73

Table S4778.  Gene #435: 'BRCA1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
BRCA1 MUTATED 2 0 3 2
BRCA1 WILD-TYPE 52 10 21 20
'INSRR MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0621 (Fisher's exact test), Q value = 0.27

Table S4779.  Gene #436: 'INSRR MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
INSRR MUTATED 3 1 0 3
INSRR WILD-TYPE 43 57 64 40
'INSRR MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00524 (Fisher's exact test), Q value = 0.065

Table S4780.  Gene #436: 'INSRR MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
INSRR MUTATED 5 0 2
INSRR WILD-TYPE 46 83 75

Figure S1477.  Get High-res Image Gene #436: 'INSRR MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'INSRR MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00903 (Fisher's exact test), Q value = 0.089

Table S4781.  Gene #436: 'INSRR MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
INSRR MUTATED 21 6 4 1
INSRR WILD-TYPE 157 177 97 19

Figure S1478.  Get High-res Image Gene #436: 'INSRR MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'INSRR MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.238 (Fisher's exact test), Q value = 0.56

Table S4782.  Gene #436: 'INSRR MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
INSRR MUTATED 11 4 9
INSRR WILD-TYPE 76 76 91
'INSRR MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0247 (Fisher's exact test), Q value = 0.16

Table S4783.  Gene #436: 'INSRR MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
INSRR MUTATED 3 5 14
INSRR WILD-TYPE 86 155 124

Figure S1479.  Get High-res Image Gene #436: 'INSRR MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'INSRR MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00968 (Fisher's exact test), Q value = 0.093

Table S4784.  Gene #436: 'INSRR MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
INSRR MUTATED 16 6 0
INSRR WILD-TYPE 166 127 72

Figure S1480.  Get High-res Image Gene #436: 'INSRR MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'INSRR MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.229 (Fisher's exact test), Q value = 0.55

Table S4785.  Gene #436: 'INSRR MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
INSRR MUTATED 8 6 10 8
INSRR WILD-TYPE 104 90 82 178
'INSRR MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 5e-05 (Fisher's exact test), Q value = 0.0032

Table S4786.  Gene #436: 'INSRR MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
INSRR MUTATED 9 3 8 2 2 0 8
INSRR WILD-TYPE 51 47 41 38 61 125 91

Figure S1481.  Get High-res Image Gene #436: 'INSRR MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'INSRR MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.178 (Fisher's exact test), Q value = 0.48

Table S4787.  Gene #436: 'INSRR MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
INSRR MUTATED 14 5 2 11
INSRR WILD-TYPE 116 73 66 185
'INSRR MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0247 (Fisher's exact test), Q value = 0.16

Table S4788.  Gene #436: 'INSRR MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
INSRR MUTATED 1 6 3 4 11 3 3 0 1
INSRR WILD-TYPE 39 56 25 76 58 45 40 28 73

Figure S1482.  Get High-res Image Gene #436: 'INSRR MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'INSRR MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00288 (Fisher's exact test), Q value = 0.048

Table S4789.  Gene #436: 'INSRR MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
INSRR MUTATED 2 0 3 6
INSRR WILD-TYPE 31 31 24 13

Figure S1483.  Get High-res Image Gene #436: 'INSRR MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'INSRR MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.894 (Fisher's exact test), Q value = 1

Table S4790.  Gene #436: 'INSRR MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
INSRR MUTATED 6 0 3 2
INSRR WILD-TYPE 48 10 21 20
'FBN2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00028 (Fisher's exact test), Q value = 0.01

Table S4791.  Gene #437: 'FBN2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
FBN2 MUTATED 8 0 2 7
FBN2 WILD-TYPE 38 58 62 36

Figure S1484.  Get High-res Image Gene #437: 'FBN2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'FBN2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00075 (Fisher's exact test), Q value = 0.02

Table S4792.  Gene #437: 'FBN2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
FBN2 MUTATED 11 4 2
FBN2 WILD-TYPE 40 79 75

Figure S1485.  Get High-res Image Gene #437: 'FBN2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'FBN2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00187 (Fisher's exact test), Q value = 0.036

Table S4793.  Gene #437: 'FBN2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
FBN2 MUTATED 29 10 5 2
FBN2 WILD-TYPE 149 173 96 18

Figure S1486.  Get High-res Image Gene #437: 'FBN2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'FBN2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.261 (Fisher's exact test), Q value = 0.58

Table S4794.  Gene #437: 'FBN2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
FBN2 MUTATED 12 5 11
FBN2 WILD-TYPE 75 75 89
'FBN2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0787 (Fisher's exact test), Q value = 0.3

Table S4795.  Gene #437: 'FBN2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
FBN2 MUTATED 6 12 20
FBN2 WILD-TYPE 83 148 118
'FBN2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.365 (Fisher's exact test), Q value = 0.69

Table S4796.  Gene #437: 'FBN2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
FBN2 MUTATED 21 13 4
FBN2 WILD-TYPE 161 120 68
'FBN2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.276 (Fisher's exact test), Q value = 0.6

Table S4797.  Gene #437: 'FBN2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
FBN2 MUTATED 6 9 12 19
FBN2 WILD-TYPE 106 87 80 167
'FBN2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00018 (Fisher's exact test), Q value = 0.0078

Table S4798.  Gene #437: 'FBN2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
FBN2 MUTATED 3 5 10 3 6 2 17
FBN2 WILD-TYPE 57 45 39 37 57 123 82

Figure S1487.  Get High-res Image Gene #437: 'FBN2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'FBN2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.445 (Fisher's exact test), Q value = 0.77

Table S4799.  Gene #437: 'FBN2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
FBN2 MUTATED 12 9 3 20
FBN2 WILD-TYPE 118 69 65 176
'FBN2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00151 (Fisher's exact test), Q value = 0.032

Table S4800.  Gene #437: 'FBN2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
FBN2 MUTATED 6 9 2 4 14 5 0 0 4
FBN2 WILD-TYPE 34 53 26 76 55 43 43 28 70

Figure S1488.  Get High-res Image Gene #437: 'FBN2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'FBN2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.31 (Fisher's exact test), Q value = 0.64

Table S4801.  Gene #437: 'FBN2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
FBN2 MUTATED 4 3 2 5
FBN2 WILD-TYPE 29 28 25 14
'FBN2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.792 (Fisher's exact test), Q value = 1

Table S4802.  Gene #437: 'FBN2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
FBN2 MUTATED 9 1 2 2
FBN2 WILD-TYPE 45 9 22 20
'STAB2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00058 (Fisher's exact test), Q value = 0.017

Table S4803.  Gene #438: 'STAB2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
STAB2 MUTATED 7 0 1 5
STAB2 WILD-TYPE 39 58 63 38

Figure S1489.  Get High-res Image Gene #438: 'STAB2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'STAB2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00781 (Fisher's exact test), Q value = 0.083

Table S4804.  Gene #438: 'STAB2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
STAB2 MUTATED 8 2 3
STAB2 WILD-TYPE 43 81 74

Figure S1490.  Get High-res Image Gene #438: 'STAB2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'STAB2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00011 (Fisher's exact test), Q value = 0.0056

Table S4805.  Gene #438: 'STAB2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
STAB2 MUTATED 26 4 4 2
STAB2 WILD-TYPE 152 179 97 18

Figure S1491.  Get High-res Image Gene #438: 'STAB2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'STAB2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.678 (Fisher's exact test), Q value = 0.96

Table S4806.  Gene #438: 'STAB2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
STAB2 MUTATED 8 5 10
STAB2 WILD-TYPE 79 75 90
'STAB2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.437 (Fisher's exact test), Q value = 0.76

Table S4807.  Gene #438: 'STAB2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
STAB2 MUTATED 7 9 13
STAB2 WILD-TYPE 82 151 125
'STAB2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.936 (Fisher's exact test), Q value = 1

Table S4808.  Gene #438: 'STAB2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
STAB2 MUTATED 13 10 6
STAB2 WILD-TYPE 169 123 66
'STAB2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.254 (Fisher's exact test), Q value = 0.58

Table S4809.  Gene #438: 'STAB2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
STAB2 MUTATED 4 10 7 15
STAB2 WILD-TYPE 108 86 85 171
'STAB2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0466 (Fisher's exact test), Q value = 0.23

Table S4810.  Gene #438: 'STAB2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
STAB2 MUTATED 6 4 6 1 4 3 12
STAB2 WILD-TYPE 54 46 43 39 59 122 87

Figure S1492.  Get High-res Image Gene #438: 'STAB2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'STAB2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.172 (Fisher's exact test), Q value = 0.47

Table S4811.  Gene #438: 'STAB2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
STAB2 MUTATED 10 6 1 18
STAB2 WILD-TYPE 120 72 67 178
'STAB2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.175 (Fisher's exact test), Q value = 0.47

Table S4812.  Gene #438: 'STAB2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
STAB2 MUTATED 2 5 4 4 11 3 1 1 4
STAB2 WILD-TYPE 38 57 24 76 58 45 42 27 70
'STAB2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.329 (Fisher's exact test), Q value = 0.66

Table S4813.  Gene #438: 'STAB2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
STAB2 MUTATED 3 3 0 2
STAB2 WILD-TYPE 30 28 27 17
'STAB2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.436 (Fisher's exact test), Q value = 0.76

Table S4814.  Gene #438: 'STAB2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
STAB2 MUTATED 6 0 2 0
STAB2 WILD-TYPE 48 10 22 22
'ATP6V1A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.527 (Fisher's exact test), Q value = 0.85

Table S4815.  Gene #439: 'ATP6V1A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ATP6V1A MUTATED 4 3 3 1
ATP6V1A WILD-TYPE 174 180 98 19
'ATP6V1A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0131 (Fisher's exact test), Q value = 0.11

Table S4816.  Gene #439: 'ATP6V1A MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ATP6V1A MUTATED 6 3 0
ATP6V1A WILD-TYPE 81 77 100

Figure S1493.  Get High-res Image Gene #439: 'ATP6V1A MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'ATP6V1A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.308 (Fisher's exact test), Q value = 0.64

Table S4817.  Gene #439: 'ATP6V1A MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ATP6V1A MUTATED 0 4 4
ATP6V1A WILD-TYPE 89 156 134
'ATP6V1A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.807 (Fisher's exact test), Q value = 1

Table S4818.  Gene #439: 'ATP6V1A MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ATP6V1A MUTATED 4 2 2
ATP6V1A WILD-TYPE 178 131 70
'ATP6V1A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.346 (Fisher's exact test), Q value = 0.67

Table S4819.  Gene #439: 'ATP6V1A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ATP6V1A MUTATED 3 2 4 2
ATP6V1A WILD-TYPE 109 94 88 184
'ATP6V1A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0313 (Fisher's exact test), Q value = 0.18

Table S4820.  Gene #439: 'ATP6V1A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ATP6V1A MUTATED 1 0 2 2 4 0 2
ATP6V1A WILD-TYPE 59 50 47 38 59 125 97

Figure S1494.  Get High-res Image Gene #439: 'ATP6V1A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ATP6V1A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0976 (Fisher's exact test), Q value = 0.34

Table S4821.  Gene #439: 'ATP6V1A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ATP6V1A MUTATED 2 4 3 2
ATP6V1A WILD-TYPE 128 74 65 194
'ATP6V1A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.269 (Fisher's exact test), Q value = 0.59

Table S4822.  Gene #439: 'ATP6V1A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ATP6V1A MUTATED 2 4 0 2 2 0 1 0 0
ATP6V1A WILD-TYPE 38 58 28 78 67 48 42 28 74
'ATP6V1A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.39 (Fisher's exact test), Q value = 0.72

Table S4823.  Gene #439: 'ATP6V1A MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
ATP6V1A MUTATED 2 0 2 0
ATP6V1A WILD-TYPE 31 31 25 19
'ATP6V1A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.671 (Fisher's exact test), Q value = 0.95

Table S4824.  Gene #439: 'ATP6V1A MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
ATP6V1A MUTATED 2 0 2 0
ATP6V1A WILD-TYPE 52 10 22 22
'DUSP19 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.223 (Fisher's exact test), Q value = 0.54

Table S4825.  Gene #440: 'DUSP19 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
DUSP19 MUTATED 8 2 2 0
DUSP19 WILD-TYPE 170 181 99 20
'DUSP19 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.852 (Fisher's exact test), Q value = 1

Table S4826.  Gene #440: 'DUSP19 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
DUSP19 MUTATED 4 2 4
DUSP19 WILD-TYPE 83 78 96
'DUSP19 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.141 (Fisher's exact test), Q value = 0.42

Table S4827.  Gene #440: 'DUSP19 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
DUSP19 MUTATED 0 6 6
DUSP19 WILD-TYPE 89 154 132
'DUSP19 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.745 (Fisher's exact test), Q value = 1

Table S4828.  Gene #440: 'DUSP19 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
DUSP19 MUTATED 6 5 1
DUSP19 WILD-TYPE 176 128 71
'DUSP19 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.229 (Fisher's exact test), Q value = 0.55

Table S4829.  Gene #440: 'DUSP19 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
DUSP19 MUTATED 1 4 4 3
DUSP19 WILD-TYPE 111 92 88 183
'DUSP19 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.322 (Fisher's exact test), Q value = 0.65

Table S4830.  Gene #440: 'DUSP19 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
DUSP19 MUTATED 3 2 2 1 2 1 1
DUSP19 WILD-TYPE 57 48 47 39 61 124 98
'DUSP19 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.172 (Fisher's exact test), Q value = 0.47

Table S4831.  Gene #440: 'DUSP19 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
DUSP19 MUTATED 6 2 0 3
DUSP19 WILD-TYPE 124 76 68 193
'DUSP19 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.734 (Fisher's exact test), Q value = 1

Table S4832.  Gene #440: 'DUSP19 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
DUSP19 MUTATED 3 2 0 2 1 1 1 0 1
DUSP19 WILD-TYPE 37 60 28 78 68 47 42 28 73
'MRPS5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00302 (Fisher's exact test), Q value = 0.049

Table S4833.  Gene #441: 'MRPS5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
MRPS5 MUTATED 10 1 0 1
MRPS5 WILD-TYPE 168 182 101 19

Figure S1495.  Get High-res Image Gene #441: 'MRPS5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'MRPS5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.787 (Fisher's exact test), Q value = 1

Table S4834.  Gene #441: 'MRPS5 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
MRPS5 MUTATED 3 4 3
MRPS5 WILD-TYPE 84 76 97
'MRPS5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.39 (Fisher's exact test), Q value = 0.72

Table S4835.  Gene #441: 'MRPS5 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
MRPS5 MUTATED 1 4 6
MRPS5 WILD-TYPE 88 156 132
'MRPS5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.285 (Fisher's exact test), Q value = 0.61

Table S4836.  Gene #441: 'MRPS5 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
MRPS5 MUTATED 6 5 0
MRPS5 WILD-TYPE 176 128 72
'MRPS5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.207 (Fisher's exact test), Q value = 0.51

Table S4837.  Gene #441: 'MRPS5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
MRPS5 MUTATED 3 5 2 2
MRPS5 WILD-TYPE 109 91 90 184
'MRPS5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0748 (Fisher's exact test), Q value = 0.29

Table S4838.  Gene #441: 'MRPS5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
MRPS5 MUTATED 2 3 2 2 1 0 2
MRPS5 WILD-TYPE 58 47 47 38 62 125 97
'MRPS5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00181 (Fisher's exact test), Q value = 0.035

Table S4839.  Gene #441: 'MRPS5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
MRPS5 MUTATED 9 0 0 2
MRPS5 WILD-TYPE 121 78 68 194

Figure S1496.  Get High-res Image Gene #441: 'MRPS5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'MRPS5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00038 (Fisher's exact test), Q value = 0.013

Table S4840.  Gene #441: 'MRPS5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
MRPS5 MUTATED 6 0 1 1 1 0 1 1 0
MRPS5 WILD-TYPE 34 62 27 79 68 48 42 27 74

Figure S1497.  Get High-res Image Gene #441: 'MRPS5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'UIMC1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.637 (Fisher's exact test), Q value = 0.93

Table S4841.  Gene #442: 'UIMC1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
UIMC1 MUTATED 5 2 2 0
UIMC1 WILD-TYPE 173 181 99 20
'UIMC1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.516 (Fisher's exact test), Q value = 0.84

Table S4842.  Gene #442: 'UIMC1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
UIMC1 MUTATED 3 2 1
UIMC1 WILD-TYPE 84 78 99
'UIMC1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.264 (Fisher's exact test), Q value = 0.59

Table S4843.  Gene #442: 'UIMC1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
UIMC1 MUTATED 2 1 4
UIMC1 WILD-TYPE 87 159 134
'UIMC1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.366 (Fisher's exact test), Q value = 0.69

Table S4844.  Gene #442: 'UIMC1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
UIMC1 MUTATED 5 2 0
UIMC1 WILD-TYPE 177 131 72
'UIMC1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0939 (Fisher's exact test), Q value = 0.34

Table S4845.  Gene #442: 'UIMC1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
UIMC1 MUTATED 3 1 4 1
UIMC1 WILD-TYPE 109 95 88 185
'UIMC1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0428 (Fisher's exact test), Q value = 0.22

Table S4846.  Gene #442: 'UIMC1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
UIMC1 MUTATED 4 1 2 0 1 1 0
UIMC1 WILD-TYPE 56 49 47 40 62 124 99

Figure S1498.  Get High-res Image Gene #442: 'UIMC1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'UIMC1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.954 (Fisher's exact test), Q value = 1

Table S4847.  Gene #442: 'UIMC1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
UIMC1 MUTATED 3 1 1 3
UIMC1 WILD-TYPE 127 77 67 193
'UIMC1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.527 (Fisher's exact test), Q value = 0.85

Table S4848.  Gene #442: 'UIMC1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
UIMC1 MUTATED 0 2 0 3 1 0 1 1 0
UIMC1 WILD-TYPE 40 60 28 77 68 48 42 27 74
'LRP2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00549 (Fisher's exact test), Q value = 0.067

Table S4849.  Gene #443: 'LRP2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
LRP2 MUTATED 12 6 3 9
LRP2 WILD-TYPE 34 52 61 34

Figure S1499.  Get High-res Image Gene #443: 'LRP2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'LRP2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00088 (Fisher's exact test), Q value = 0.022

Table S4850.  Gene #443: 'LRP2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
LRP2 MUTATED 15 11 4
LRP2 WILD-TYPE 36 72 73

Figure S1500.  Get High-res Image Gene #443: 'LRP2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'LRP2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00035 (Fisher's exact test), Q value = 0.012

Table S4851.  Gene #443: 'LRP2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
LRP2 MUTATED 47 30 10 0
LRP2 WILD-TYPE 131 153 91 20

Figure S1501.  Get High-res Image Gene #443: 'LRP2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'LRP2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0608 (Fisher's exact test), Q value = 0.27

Table S4852.  Gene #443: 'LRP2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
LRP2 MUTATED 20 9 24
LRP2 WILD-TYPE 67 71 76
'LRP2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0152 (Fisher's exact test), Q value = 0.12

Table S4853.  Gene #443: 'LRP2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
LRP2 MUTATED 9 25 34
LRP2 WILD-TYPE 80 135 104

Figure S1502.  Get High-res Image Gene #443: 'LRP2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'LRP2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.878 (Fisher's exact test), Q value = 1

Table S4854.  Gene #443: 'LRP2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
LRP2 MUTATED 33 24 11
LRP2 WILD-TYPE 149 109 61
'LRP2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.482 (Fisher's exact test), Q value = 0.81

Table S4855.  Gene #443: 'LRP2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
LRP2 MUTATED 18 20 20 29
LRP2 WILD-TYPE 94 76 72 157
'LRP2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0025 (Fisher's exact test), Q value = 0.043

Table S4856.  Gene #443: 'LRP2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
LRP2 MUTATED 12 8 20 5 9 14 19
LRP2 WILD-TYPE 48 42 29 35 54 111 80

Figure S1503.  Get High-res Image Gene #443: 'LRP2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'LRP2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00522 (Fisher's exact test), Q value = 0.065

Table S4857.  Gene #443: 'LRP2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
LRP2 MUTATED 32 16 4 31
LRP2 WILD-TYPE 98 62 64 165

Figure S1504.  Get High-res Image Gene #443: 'LRP2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'LRP2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.013 (Fisher's exact test), Q value = 0.11

Table S4858.  Gene #443: 'LRP2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
LRP2 MUTATED 9 14 8 11 18 4 4 8 7
LRP2 WILD-TYPE 31 48 20 69 51 44 39 20 67

Figure S1505.  Get High-res Image Gene #443: 'LRP2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'LRP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.184 (Fisher's exact test), Q value = 0.48

Table S4859.  Gene #443: 'LRP2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
LRP2 MUTATED 6 5 3 7
LRP2 WILD-TYPE 27 26 24 12
'LRP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.508 (Fisher's exact test), Q value = 0.83

Table S4860.  Gene #443: 'LRP2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
LRP2 MUTATED 11 3 5 2
LRP2 WILD-TYPE 43 7 19 20
'FUT10 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.719 (Fisher's exact test), Q value = 0.99

Table S4861.  Gene #444: 'FUT10 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
FUT10 MUTATED 4 2 1 0
FUT10 WILD-TYPE 174 181 100 20
'FUT10 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S4862.  Gene #444: 'FUT10 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
FUT10 MUTATED 2 1 2
FUT10 WILD-TYPE 85 79 98
'FUT10 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.459 (Fisher's exact test), Q value = 0.79

Table S4863.  Gene #444: 'FUT10 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
FUT10 MUTATED 2 1 2
FUT10 WILD-TYPE 87 159 136
'FUT10 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.85 (Fisher's exact test), Q value = 1

Table S4864.  Gene #444: 'FUT10 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
FUT10 MUTATED 3 1 1
FUT10 WILD-TYPE 179 132 71
'FUT10 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.312 (Fisher's exact test), Q value = 0.64

Table S4865.  Gene #444: 'FUT10 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
FUT10 MUTATED 2 3 0 2
FUT10 WILD-TYPE 110 93 92 184
'FUT10 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.306 (Fisher's exact test), Q value = 0.64

Table S4866.  Gene #444: 'FUT10 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
FUT10 MUTATED 1 1 2 1 1 1 0
FUT10 WILD-TYPE 59 49 47 39 62 124 99
'FUT10 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.481 (Fisher's exact test), Q value = 0.81

Table S4867.  Gene #444: 'FUT10 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
FUT10 MUTATED 3 2 0 2
FUT10 WILD-TYPE 127 76 68 194
'FUT10 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.449 (Fisher's exact test), Q value = 0.77

Table S4868.  Gene #444: 'FUT10 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
FUT10 MUTATED 0 2 0 1 2 0 2 0 0
FUT10 WILD-TYPE 40 60 28 79 67 48 41 28 74
'GAB2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.235 (Fisher's exact test), Q value = 0.56

Table S4869.  Gene #445: 'GAB2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
GAB2 MUTATED 6 1 2 0
GAB2 WILD-TYPE 172 182 99 20
'GAB2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.604 (Fisher's exact test), Q value = 0.91

Table S4870.  Gene #445: 'GAB2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
GAB2 MUTATED 3 1 4
GAB2 WILD-TYPE 84 79 96
'GAB2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.32 (Fisher's exact test), Q value = 0.65

Table S4871.  Gene #445: 'GAB2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
GAB2 MUTATED 1 3 6
GAB2 WILD-TYPE 88 157 132
'GAB2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.104 (Fisher's exact test), Q value = 0.36

Table S4872.  Gene #445: 'GAB2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
GAB2 MUTATED 8 2 0
GAB2 WILD-TYPE 174 131 72
'GAB2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.394 (Fisher's exact test), Q value = 0.72

Table S4873.  Gene #445: 'GAB2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
GAB2 MUTATED 2 4 2 2
GAB2 WILD-TYPE 110 92 90 184
'GAB2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.387 (Fisher's exact test), Q value = 0.71

Table S4874.  Gene #445: 'GAB2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
GAB2 MUTATED 1 1 3 0 2 1 2
GAB2 WILD-TYPE 59 49 46 40 61 124 97
'GAB2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.534 (Fisher's exact test), Q value = 0.85

Table S4875.  Gene #445: 'GAB2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
GAB2 MUTATED 3 2 2 2
GAB2 WILD-TYPE 127 76 66 194
'GAB2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.248 (Fisher's exact test), Q value = 0.57

Table S4876.  Gene #445: 'GAB2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
GAB2 MUTATED 0 3 2 1 1 1 1 0 0
GAB2 WILD-TYPE 40 59 26 79 68 47 42 28 74
'GAB2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.908 (Fisher's exact test), Q value = 1

Table S4877.  Gene #445: 'GAB2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
GAB2 MUTATED 2 1 1 0
GAB2 WILD-TYPE 31 30 26 19
'GAB2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.27 (Fisher's exact test), Q value = 0.59

Table S4878.  Gene #445: 'GAB2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
GAB2 MUTATED 1 1 1 1
GAB2 WILD-TYPE 53 9 23 21
'DSG1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00395 (Fisher's exact test), Q value = 0.057

Table S4879.  Gene #446: 'DSG1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
DSG1 MUTATED 3 0 0 4
DSG1 WILD-TYPE 43 58 64 39

Figure S1506.  Get High-res Image Gene #446: 'DSG1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'DSG1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.104 (Fisher's exact test), Q value = 0.36

Table S4880.  Gene #446: 'DSG1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
DSG1 MUTATED 4 1 2
DSG1 WILD-TYPE 47 82 75
'DSG1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00237 (Fisher's exact test), Q value = 0.042

Table S4881.  Gene #446: 'DSG1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
DSG1 MUTATED 14 1 5 1
DSG1 WILD-TYPE 164 182 96 19

Figure S1507.  Get High-res Image Gene #446: 'DSG1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'DSG1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.631 (Fisher's exact test), Q value = 0.93

Table S4882.  Gene #446: 'DSG1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
DSG1 MUTATED 6 3 4
DSG1 WILD-TYPE 81 77 96
'DSG1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00556 (Fisher's exact test), Q value = 0.068

Table S4883.  Gene #446: 'DSG1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
DSG1 MUTATED 0 7 12
DSG1 WILD-TYPE 89 153 126

Figure S1508.  Get High-res Image Gene #446: 'DSG1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'DSG1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0655 (Fisher's exact test), Q value = 0.28

Table S4884.  Gene #446: 'DSG1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
DSG1 MUTATED 11 8 0
DSG1 WILD-TYPE 171 125 72
'DSG1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.383 (Fisher's exact test), Q value = 0.71

Table S4885.  Gene #446: 'DSG1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
DSG1 MUTATED 2 4 6 9
DSG1 WILD-TYPE 110 92 86 177
'DSG1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.152 (Fisher's exact test), Q value = 0.44

Table S4886.  Gene #446: 'DSG1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
DSG1 MUTATED 3 2 3 3 2 1 7
DSG1 WILD-TYPE 57 48 46 37 61 124 92
'DSG1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.809 (Fisher's exact test), Q value = 1

Table S4887.  Gene #446: 'DSG1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
DSG1 MUTATED 7 2 2 9
DSG1 WILD-TYPE 123 76 66 187
'DSG1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.373 (Fisher's exact test), Q value = 0.7

Table S4888.  Gene #446: 'DSG1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
DSG1 MUTATED 3 3 2 1 5 0 2 1 3
DSG1 WILD-TYPE 37 59 26 79 64 48 41 27 71
'DSG1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0597 (Fisher's exact test), Q value = 0.27

Table S4889.  Gene #446: 'DSG1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
DSG1 MUTATED 0 0 1 2
DSG1 WILD-TYPE 33 31 26 17
'DSG1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S4890.  Gene #446: 'DSG1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
DSG1 MUTATED 2 0 1 0
DSG1 WILD-TYPE 52 10 23 22
'DKK2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0273 (Fisher's exact test), Q value = 0.17

Table S4891.  Gene #447: 'DKK2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
DKK2 MUTATED 4 0 2 0
DKK2 WILD-TYPE 42 58 62 43

Figure S1509.  Get High-res Image Gene #447: 'DKK2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'DKK2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0233 (Fisher's exact test), Q value = 0.16

Table S4892.  Gene #447: 'DKK2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
DKK2 MUTATED 4 2 0
DKK2 WILD-TYPE 47 81 77

Figure S1510.  Get High-res Image Gene #447: 'DKK2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'DKK2 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S4893.  Gene #447: 'DKK2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
DKK2 MUTATED 10 10 5 1
DKK2 WILD-TYPE 168 173 96 19
'DKK2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.498 (Fisher's exact test), Q value = 0.82

Table S4894.  Gene #447: 'DKK2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
DKK2 MUTATED 8 7 5
DKK2 WILD-TYPE 79 73 95
'DKK2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0678 (Fisher's exact test), Q value = 0.28

Table S4895.  Gene #447: 'DKK2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
DKK2 MUTATED 6 5 13
DKK2 WILD-TYPE 83 155 125
'DKK2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.352 (Fisher's exact test), Q value = 0.68

Table S4896.  Gene #447: 'DKK2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
DKK2 MUTATED 14 5 5
DKK2 WILD-TYPE 168 128 67
'DKK2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0855 (Fisher's exact test), Q value = 0.32

Table S4897.  Gene #447: 'DKK2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
DKK2 MUTATED 4 7 9 6
DKK2 WILD-TYPE 108 89 83 180
'DKK2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0116 (Fisher's exact test), Q value = 0.11

Table S4898.  Gene #447: 'DKK2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
DKK2 MUTATED 1 4 7 2 6 2 4
DKK2 WILD-TYPE 59 46 42 38 57 123 95

Figure S1511.  Get High-res Image Gene #447: 'DKK2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'DKK2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.42 (Fisher's exact test), Q value = 0.75

Table S4899.  Gene #447: 'DKK2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
DKK2 MUTATED 8 7 3 8
DKK2 WILD-TYPE 122 71 65 188
'DKK2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.153 (Fisher's exact test), Q value = 0.44

Table S4900.  Gene #447: 'DKK2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
DKK2 MUTATED 4 5 1 1 7 1 3 2 2
DKK2 WILD-TYPE 36 57 27 79 62 47 40 26 72
'DKK2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.833 (Fisher's exact test), Q value = 1

Table S4901.  Gene #447: 'DKK2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
DKK2 MUTATED 3 1 2 1
DKK2 WILD-TYPE 30 30 25 18
'DKK2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.548 (Fisher's exact test), Q value = 0.87

Table S4902.  Gene #447: 'DKK2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
DKK2 MUTATED 4 1 2 0
DKK2 WILD-TYPE 50 9 22 22
'COX15 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.065 (Fisher's exact test), Q value = 0.28

Table S4903.  Gene #448: 'COX15 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
COX15 MUTATED 1 0 0 2
COX15 WILD-TYPE 45 58 64 41
'COX15 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.184 (Fisher's exact test), Q value = 0.48

Table S4904.  Gene #448: 'COX15 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
COX15 MUTATED 2 0 1
COX15 WILD-TYPE 49 83 76
'COX15 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.106 (Fisher's exact test), Q value = 0.36

Table S4905.  Gene #448: 'COX15 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
COX15 MUTATED 6 1 0 0
COX15 WILD-TYPE 172 182 101 20
'COX15 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.32 (Fisher's exact test), Q value = 0.65

Table S4906.  Gene #448: 'COX15 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
COX15 MUTATED 0 1 3
COX15 WILD-TYPE 87 79 97
'COX15 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.616 (Fisher's exact test), Q value = 0.91

Table S4907.  Gene #448: 'COX15 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
COX15 MUTATED 1 2 4
COX15 WILD-TYPE 88 158 134
'COX15 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S4908.  Gene #448: 'COX15 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
COX15 MUTATED 4 2 1
COX15 WILD-TYPE 178 131 71
'COX15 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.952 (Fisher's exact test), Q value = 1

Table S4909.  Gene #448: 'COX15 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
COX15 MUTATED 1 2 1 3
COX15 WILD-TYPE 111 94 91 183
'COX15 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.176 (Fisher's exact test), Q value = 0.48

Table S4910.  Gene #448: 'COX15 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
COX15 MUTATED 2 0 2 0 1 0 2
COX15 WILD-TYPE 58 50 47 40 62 125 97
'COX15 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S4911.  Gene #448: 'COX15 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
COX15 MUTATED 1 1 1 3
COX15 WILD-TYPE 129 77 67 193
'COX15 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.506 (Fisher's exact test), Q value = 0.83

Table S4912.  Gene #448: 'COX15 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
COX15 MUTATED 1 1 0 1 3 0 0 0 0
COX15 WILD-TYPE 39 61 28 79 66 48 43 28 74
'JAK2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00517 (Fisher's exact test), Q value = 0.065

Table S4913.  Gene #449: 'JAK2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
JAK2 MUTATED 4 0 0 3
JAK2 WILD-TYPE 42 58 64 40

Figure S1512.  Get High-res Image Gene #449: 'JAK2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'JAK2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.124 (Fisher's exact test), Q value = 0.39

Table S4914.  Gene #449: 'JAK2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
JAK2 MUTATED 4 2 1
JAK2 WILD-TYPE 47 81 76
'JAK2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.435 (Fisher's exact test), Q value = 0.76

Table S4915.  Gene #449: 'JAK2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
JAK2 MUTATED 19 12 11 2
JAK2 WILD-TYPE 159 171 90 18
'JAK2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S4916.  Gene #449: 'JAK2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
JAK2 MUTATED 13 11 14
JAK2 WILD-TYPE 74 69 86
'JAK2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.322 (Fisher's exact test), Q value = 0.65

Table S4917.  Gene #449: 'JAK2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
JAK2 MUTATED 6 16 18
JAK2 WILD-TYPE 83 144 120
'JAK2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.109 (Fisher's exact test), Q value = 0.37

Table S4918.  Gene #449: 'JAK2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
JAK2 MUTATED 25 11 4
JAK2 WILD-TYPE 157 122 68
'JAK2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00167 (Fisher's exact test), Q value = 0.034

Table S4919.  Gene #449: 'JAK2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
JAK2 MUTATED 15 9 15 7
JAK2 WILD-TYPE 97 87 77 179

Figure S1513.  Get High-res Image Gene #449: 'JAK2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'JAK2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 3e-05 (Fisher's exact test), Q value = 0.0022

Table S4920.  Gene #449: 'JAK2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
JAK2 MUTATED 10 8 9 3 9 1 6
JAK2 WILD-TYPE 50 42 40 37 54 124 93

Figure S1514.  Get High-res Image Gene #449: 'JAK2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'JAK2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 2e-05 (Fisher's exact test), Q value = 0.0017

Table S4921.  Gene #449: 'JAK2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
JAK2 MUTATED 26 8 2 9
JAK2 WILD-TYPE 104 70 66 187

Figure S1515.  Get High-res Image Gene #449: 'JAK2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'JAK2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00223 (Fisher's exact test), Q value = 0.04

Table S4922.  Gene #449: 'JAK2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
JAK2 MUTATED 6 9 6 7 8 5 4 0 0
JAK2 WILD-TYPE 34 53 22 73 61 43 39 28 74

Figure S1516.  Get High-res Image Gene #449: 'JAK2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'JAK2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.325 (Fisher's exact test), Q value = 0.65

Table S4923.  Gene #449: 'JAK2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
JAK2 MUTATED 7 3 2 4
JAK2 WILD-TYPE 26 28 25 15
'JAK2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.82 (Fisher's exact test), Q value = 1

Table S4924.  Gene #449: 'JAK2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
JAK2 MUTATED 8 2 4 2
JAK2 WILD-TYPE 46 8 20 20
'HIVEP2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0158 (Fisher's exact test), Q value = 0.12

Table S4925.  Gene #450: 'HIVEP2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
HIVEP2 MUTATED 4 1 0 4
HIVEP2 WILD-TYPE 42 57 64 39

Figure S1517.  Get High-res Image Gene #450: 'HIVEP2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'HIVEP2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.342 (Fisher's exact test), Q value = 0.67

Table S4926.  Gene #450: 'HIVEP2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
HIVEP2 MUTATED 4 2 3
HIVEP2 WILD-TYPE 47 81 74
'HIVEP2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00233 (Fisher's exact test), Q value = 0.042

Table S4927.  Gene #450: 'HIVEP2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
HIVEP2 MUTATED 15 3 3 3
HIVEP2 WILD-TYPE 163 180 98 17

Figure S1518.  Get High-res Image Gene #450: 'HIVEP2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'HIVEP2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.299 (Fisher's exact test), Q value = 0.63

Table S4928.  Gene #450: 'HIVEP2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
HIVEP2 MUTATED 7 2 6
HIVEP2 WILD-TYPE 80 78 94
'HIVEP2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0121 (Fisher's exact test), Q value = 0.11

Table S4929.  Gene #450: 'HIVEP2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
HIVEP2 MUTATED 0 8 11
HIVEP2 WILD-TYPE 89 152 127

Figure S1519.  Get High-res Image Gene #450: 'HIVEP2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'HIVEP2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S4930.  Gene #450: 'HIVEP2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
HIVEP2 MUTATED 9 7 3
HIVEP2 WILD-TYPE 173 126 69
'HIVEP2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.955 (Fisher's exact test), Q value = 1

Table S4931.  Gene #450: 'HIVEP2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
HIVEP2 MUTATED 5 4 5 10
HIVEP2 WILD-TYPE 107 92 87 176
'HIVEP2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0608 (Fisher's exact test), Q value = 0.27

Table S4932.  Gene #450: 'HIVEP2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
HIVEP2 MUTATED 4 1 4 0 5 2 8
HIVEP2 WILD-TYPE 56 49 45 40 58 123 91
'HIVEP2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.989 (Fisher's exact test), Q value = 1

Table S4933.  Gene #450: 'HIVEP2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
HIVEP2 MUTATED 6 4 3 11
HIVEP2 WILD-TYPE 124 74 65 185
'HIVEP2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0744 (Fisher's exact test), Q value = 0.29

Table S4934.  Gene #450: 'HIVEP2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
HIVEP2 MUTATED 1 3 3 3 9 0 2 1 2
HIVEP2 WILD-TYPE 39 59 25 77 60 48 41 27 72
'HIVEP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.628 (Fisher's exact test), Q value = 0.92

Table S4935.  Gene #450: 'HIVEP2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
HIVEP2 MUTATED 2 2 0 1
HIVEP2 WILD-TYPE 31 29 27 18
'HIVEP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S4936.  Gene #450: 'HIVEP2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
HIVEP2 MUTATED 3 0 1 1
HIVEP2 WILD-TYPE 51 10 23 21
'RELN MUTATION STATUS' versus 'MRNA_CNMF'

P value = 5e-04 (Fisher's exact test), Q value = 0.016

Table S4937.  Gene #451: 'RELN MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
RELN MUTATED 9 3 1 9
RELN WILD-TYPE 37 55 63 34

Figure S1520.  Get High-res Image Gene #451: 'RELN MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'RELN MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0168 (Fisher's exact test), Q value = 0.13

Table S4938.  Gene #451: 'RELN MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
RELN MUTATED 11 5 6
RELN WILD-TYPE 40 78 71

Figure S1521.  Get High-res Image Gene #451: 'RELN MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'RELN MUTATION STATUS' versus 'CN_CNMF'

P value = 2e-05 (Fisher's exact test), Q value = 0.0017

Table S4939.  Gene #451: 'RELN MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
RELN MUTATED 43 13 10 5
RELN WILD-TYPE 135 170 91 15

Figure S1522.  Get High-res Image Gene #451: 'RELN MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'RELN MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.541 (Fisher's exact test), Q value = 0.86

Table S4940.  Gene #451: 'RELN MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
RELN MUTATED 19 12 18
RELN WILD-TYPE 68 68 82
'RELN MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.249 (Fisher's exact test), Q value = 0.58

Table S4941.  Gene #451: 'RELN MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
RELN MUTATED 12 22 28
RELN WILD-TYPE 77 138 110
'RELN MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S4942.  Gene #451: 'RELN MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
RELN MUTATED 30 21 11
RELN WILD-TYPE 152 112 61
'RELN MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.162 (Fisher's exact test), Q value = 0.45

Table S4943.  Gene #451: 'RELN MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
RELN MUTATED 15 19 16 20
RELN WILD-TYPE 97 77 76 166
'RELN MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S4944.  Gene #451: 'RELN MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
RELN MUTATED 13 5 20 3 8 5 16
RELN WILD-TYPE 47 45 29 37 55 120 83

Figure S1523.  Get High-res Image Gene #451: 'RELN MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'RELN MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.153 (Fisher's exact test), Q value = 0.44

Table S4945.  Gene #451: 'RELN MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
RELN MUTATED 25 14 6 25
RELN WILD-TYPE 105 64 62 171
'RELN MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0014 (Fisher's exact test), Q value = 0.031

Table S4946.  Gene #451: 'RELN MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
RELN MUTATED 12 9 5 10 18 3 7 3 3
RELN WILD-TYPE 28 53 23 70 51 45 36 25 71

Figure S1524.  Get High-res Image Gene #451: 'RELN MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'RELN MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00238 (Fisher's exact test), Q value = 0.042

Table S4947.  Gene #451: 'RELN MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
RELN MUTATED 6 1 1 7
RELN WILD-TYPE 27 30 26 12

Figure S1525.  Get High-res Image Gene #451: 'RELN MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'RELN MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.927 (Fisher's exact test), Q value = 1

Table S4948.  Gene #451: 'RELN MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
RELN MUTATED 8 1 4 2
RELN WILD-TYPE 46 9 20 20
'FLG2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.32 (Fisher's exact test), Q value = 0.65

Table S4949.  Gene #452: 'FLG2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
FLG2 MUTATED 5 2 2 3
FLG2 WILD-TYPE 41 56 62 40
'FLG2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.135 (Fisher's exact test), Q value = 0.41

Table S4950.  Gene #452: 'FLG2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
FLG2 MUTATED 6 3 3
FLG2 WILD-TYPE 45 80 74
'FLG2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00096 (Fisher's exact test), Q value = 0.024

Table S4951.  Gene #452: 'FLG2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
FLG2 MUTATED 23 6 3 0
FLG2 WILD-TYPE 155 177 98 20

Figure S1526.  Get High-res Image Gene #452: 'FLG2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'FLG2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.083 (Fisher's exact test), Q value = 0.31

Table S4952.  Gene #452: 'FLG2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
FLG2 MUTATED 9 2 10
FLG2 WILD-TYPE 78 78 90
'FLG2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.729 (Fisher's exact test), Q value = 1

Table S4953.  Gene #452: 'FLG2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
FLG2 MUTATED 5 12 12
FLG2 WILD-TYPE 84 148 126
'FLG2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.669 (Fisher's exact test), Q value = 0.95

Table S4954.  Gene #452: 'FLG2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
FLG2 MUTATED 13 12 4
FLG2 WILD-TYPE 169 121 68
'FLG2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.303 (Fisher's exact test), Q value = 0.63

Table S4955.  Gene #452: 'FLG2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
FLG2 MUTATED 4 9 8 12
FLG2 WILD-TYPE 108 87 84 174
'FLG2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.128 (Fisher's exact test), Q value = 0.4

Table S4956.  Gene #452: 'FLG2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
FLG2 MUTATED 4 5 8 1 3 5 7
FLG2 WILD-TYPE 56 45 41 39 60 120 92
'FLG2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.441 (Fisher's exact test), Q value = 0.77

Table S4957.  Gene #452: 'FLG2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
FLG2 MUTATED 12 5 2 13
FLG2 WILD-TYPE 118 73 66 183
'FLG2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.139 (Fisher's exact test), Q value = 0.42

Table S4958.  Gene #452: 'FLG2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
FLG2 MUTATED 1 4 1 7 10 1 3 3 2
FLG2 WILD-TYPE 39 58 27 73 59 47 40 25 72
'FLG2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0344 (Fisher's exact test), Q value = 0.19

Table S4959.  Gene #452: 'FLG2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
FLG2 MUTATED 0 2 2 4
FLG2 WILD-TYPE 33 29 25 15

Figure S1527.  Get High-res Image Gene #452: 'FLG2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'FLG2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.595 (Fisher's exact test), Q value = 0.9

Table S4960.  Gene #452: 'FLG2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
FLG2 MUTATED 3 0 3 2
FLG2 WILD-TYPE 51 10 21 20
'HMCN1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 2e-05 (Fisher's exact test), Q value = 0.0017

Table S4961.  Gene #453: 'HMCN1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
HMCN1 MUTATED 14 1 4 10
HMCN1 WILD-TYPE 32 57 60 33

Figure S1528.  Get High-res Image Gene #453: 'HMCN1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'HMCN1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00016 (Fisher's exact test), Q value = 0.0072

Table S4962.  Gene #453: 'HMCN1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
HMCN1 MUTATED 16 4 9
HMCN1 WILD-TYPE 35 79 68

Figure S1529.  Get High-res Image Gene #453: 'HMCN1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'HMCN1 MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S4963.  Gene #453: 'HMCN1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
HMCN1 MUTATED 54 12 15 0
HMCN1 WILD-TYPE 124 171 86 20

Figure S1530.  Get High-res Image Gene #453: 'HMCN1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'HMCN1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.627 (Fisher's exact test), Q value = 0.92

Table S4964.  Gene #453: 'HMCN1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
HMCN1 MUTATED 18 13 22
HMCN1 WILD-TYPE 69 67 78
'HMCN1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00351 (Fisher's exact test), Q value = 0.054

Table S4965.  Gene #453: 'HMCN1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
HMCN1 MUTATED 8 26 36
HMCN1 WILD-TYPE 81 134 102

Figure S1531.  Get High-res Image Gene #453: 'HMCN1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'HMCN1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.351 (Fisher's exact test), Q value = 0.68

Table S4966.  Gene #453: 'HMCN1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
HMCN1 MUTATED 37 24 9
HMCN1 WILD-TYPE 145 109 63
'HMCN1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.019 (Fisher's exact test), Q value = 0.14

Table S4967.  Gene #453: 'HMCN1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
HMCN1 MUTATED 11 20 23 28
HMCN1 WILD-TYPE 101 76 69 158

Figure S1532.  Get High-res Image Gene #453: 'HMCN1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'HMCN1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 4e-05 (Fisher's exact test), Q value = 0.0027

Table S4968.  Gene #453: 'HMCN1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
HMCN1 MUTATED 9 9 19 4 10 8 23
HMCN1 WILD-TYPE 51 41 30 36 53 117 76

Figure S1533.  Get High-res Image Gene #453: 'HMCN1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'HMCN1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0687 (Fisher's exact test), Q value = 0.28

Table S4969.  Gene #453: 'HMCN1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
HMCN1 MUTATED 28 14 5 31
HMCN1 WILD-TYPE 102 64 63 165
'HMCN1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0387 (Fisher's exact test), Q value = 0.21

Table S4970.  Gene #453: 'HMCN1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
HMCN1 MUTATED 10 14 5 10 19 4 5 4 7
HMCN1 WILD-TYPE 30 48 23 70 50 44 38 24 67

Figure S1534.  Get High-res Image Gene #453: 'HMCN1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'HMCN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.578 (Fisher's exact test), Q value = 0.88

Table S4971.  Gene #453: 'HMCN1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
HMCN1 MUTATED 5 4 2 4
HMCN1 WILD-TYPE 28 27 25 15
'HMCN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.278 (Fisher's exact test), Q value = 0.61

Table S4972.  Gene #453: 'HMCN1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
HMCN1 MUTATED 10 2 1 2
HMCN1 WILD-TYPE 44 8 23 20
'PIK3CA MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0108 (Fisher's exact test), Q value = 0.1

Table S4973.  Gene #454: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
PIK3CA MUTATED 11 4 5 10
PIK3CA WILD-TYPE 35 54 59 33

Figure S1535.  Get High-res Image Gene #454: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'PIK3CA MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0597 (Fisher's exact test), Q value = 0.27

Table S4974.  Gene #454: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
PIK3CA MUTATED 12 7 11
PIK3CA WILD-TYPE 39 76 66
'PIK3CA MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0293 (Fisher's exact test), Q value = 0.17

Table S4975.  Gene #454: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
PIK3CA MUTATED 89 68 46 5
PIK3CA WILD-TYPE 89 115 55 15

Figure S1536.  Get High-res Image Gene #454: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'PIK3CA MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.278 (Fisher's exact test), Q value = 0.6

Table S4976.  Gene #454: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
PIK3CA MUTATED 56 49 72
PIK3CA WILD-TYPE 31 31 28
'PIK3CA MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0245 (Fisher's exact test), Q value = 0.16

Table S4977.  Gene #454: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
PIK3CA MUTATED 32 73 75
PIK3CA WILD-TYPE 57 87 63

Figure S1537.  Get High-res Image Gene #454: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'PIK3CA MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00815 (Fisher's exact test), Q value = 0.084

Table S4978.  Gene #454: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
PIK3CA MUTATED 99 56 25
PIK3CA WILD-TYPE 83 77 47

Figure S1538.  Get High-res Image Gene #454: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'PIK3CA MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S4979.  Gene #454: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
PIK3CA MUTATED 66 54 59 32
PIK3CA WILD-TYPE 46 42 33 154

Figure S1539.  Get High-res Image Gene #454: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'PIK3CA MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S4980.  Gene #454: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
PIK3CA MUTATED 44 35 34 22 37 11 28
PIK3CA WILD-TYPE 16 15 15 18 26 114 71

Figure S1540.  Get High-res Image Gene #454: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'PIK3CA MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S4981.  Gene #454: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
PIK3CA MUTATED 93 42 29 43
PIK3CA WILD-TYPE 37 36 39 153

Figure S1541.  Get High-res Image Gene #454: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'PIK3CA MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S4982.  Gene #454: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
PIK3CA MUTATED 27 40 21 35 25 13 28 8 10
PIK3CA WILD-TYPE 13 22 7 45 44 35 15 20 64

Figure S1542.  Get High-res Image Gene #454: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'PIK3CA MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.906 (Fisher's exact test), Q value = 1

Table S4983.  Gene #454: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
PIK3CA MUTATED 21 17 16 12
PIK3CA WILD-TYPE 12 14 11 7
'PIK3CA MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.93 (Fisher's exact test), Q value = 1

Table S4984.  Gene #454: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
PIK3CA MUTATED 33 5 15 13
PIK3CA WILD-TYPE 21 5 9 9
'PRKD1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.504 (Fisher's exact test), Q value = 0.83

Table S4985.  Gene #455: 'PRKD1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
PRKD1 MUTATED 4 2 2 3
PRKD1 WILD-TYPE 42 56 62 40
'PRKD1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.353 (Fisher's exact test), Q value = 0.68

Table S4986.  Gene #455: 'PRKD1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
PRKD1 MUTATED 4 5 2
PRKD1 WILD-TYPE 47 78 75
'PRKD1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0199 (Fisher's exact test), Q value = 0.14

Table S4987.  Gene #455: 'PRKD1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
PRKD1 MUTATED 18 7 2 1
PRKD1 WILD-TYPE 160 176 99 19

Figure S1543.  Get High-res Image Gene #455: 'PRKD1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'PRKD1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.144 (Fisher's exact test), Q value = 0.42

Table S4988.  Gene #455: 'PRKD1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
PRKD1 MUTATED 6 2 10
PRKD1 WILD-TYPE 81 78 90
'PRKD1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.479 (Fisher's exact test), Q value = 0.81

Table S4989.  Gene #455: 'PRKD1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
PRKD1 MUTATED 4 10 12
PRKD1 WILD-TYPE 85 150 126
'PRKD1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.83 (Fisher's exact test), Q value = 1

Table S4990.  Gene #455: 'PRKD1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
PRKD1 MUTATED 14 8 4
PRKD1 WILD-TYPE 168 125 68
'PRKD1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.652 (Fisher's exact test), Q value = 0.94

Table S4991.  Gene #455: 'PRKD1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
PRKD1 MUTATED 4 7 6 12
PRKD1 WILD-TYPE 108 89 86 174
'PRKD1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.851 (Fisher's exact test), Q value = 1

Table S4992.  Gene #455: 'PRKD1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
PRKD1 MUTATED 5 4 3 3 2 6 6
PRKD1 WILD-TYPE 55 46 46 37 61 119 93
'PRKD1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.408 (Fisher's exact test), Q value = 0.73

Table S4993.  Gene #455: 'PRKD1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
PRKD1 MUTATED 11 3 2 13
PRKD1 WILD-TYPE 119 75 66 183
'PRKD1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.925 (Fisher's exact test), Q value = 1

Table S4994.  Gene #455: 'PRKD1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
PRKD1 MUTATED 3 5 3 3 5 3 2 1 4
PRKD1 WILD-TYPE 37 57 25 77 64 45 41 27 70
'PRKD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.266 (Fisher's exact test), Q value = 0.59

Table S4995.  Gene #455: 'PRKD1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
PRKD1 MUTATED 1 1 1 3
PRKD1 WILD-TYPE 32 30 26 16
'PRKD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S4996.  Gene #455: 'PRKD1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
PRKD1 MUTATED 4 0 1 1
PRKD1 WILD-TYPE 50 10 23 21
'ADAMTS19 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0358 (Fisher's exact test), Q value = 0.2

Table S4997.  Gene #456: 'ADAMTS19 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ADAMTS19 MUTATED 1 0 1 4
ADAMTS19 WILD-TYPE 45 58 63 39

Figure S1544.  Get High-res Image Gene #456: 'ADAMTS19 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'ADAMTS19 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.244 (Fisher's exact test), Q value = 0.57

Table S4998.  Gene #456: 'ADAMTS19 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ADAMTS19 MUTATED 3 1 2
ADAMTS19 WILD-TYPE 48 82 75
'ADAMTS19 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00533 (Fisher's exact test), Q value = 0.066

Table S4999.  Gene #456: 'ADAMTS19 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ADAMTS19 MUTATED 18 5 2 0
ADAMTS19 WILD-TYPE 160 178 99 20

Figure S1545.  Get High-res Image Gene #456: 'ADAMTS19 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ADAMTS19 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0366 (Fisher's exact test), Q value = 0.2

Table S5000.  Gene #456: 'ADAMTS19 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ADAMTS19 MUTATED 9 1 8
ADAMTS19 WILD-TYPE 78 79 92

Figure S1546.  Get High-res Image Gene #456: 'ADAMTS19 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'ADAMTS19 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.372 (Fisher's exact test), Q value = 0.7

Table S5001.  Gene #456: 'ADAMTS19 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ADAMTS19 MUTATED 3 10 11
ADAMTS19 WILD-TYPE 86 150 127
'ADAMTS19 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.791 (Fisher's exact test), Q value = 1

Table S5002.  Gene #456: 'ADAMTS19 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ADAMTS19 MUTATED 12 9 3
ADAMTS19 WILD-TYPE 170 124 69
'ADAMTS19 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0925 (Fisher's exact test), Q value = 0.33

Table S5003.  Gene #456: 'ADAMTS19 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ADAMTS19 MUTATED 5 9 6 5
ADAMTS19 WILD-TYPE 107 87 86 181
'ADAMTS19 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00174 (Fisher's exact test), Q value = 0.035

Table S5004.  Gene #456: 'ADAMTS19 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ADAMTS19 MUTATED 5 6 5 2 2 0 5
ADAMTS19 WILD-TYPE 55 44 44 38 61 125 94

Figure S1547.  Get High-res Image Gene #456: 'ADAMTS19 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ADAMTS19 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.36 (Fisher's exact test), Q value = 0.69

Table S5005.  Gene #456: 'ADAMTS19 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ADAMTS19 MUTATED 10 2 4 8
ADAMTS19 WILD-TYPE 120 76 64 188
'ADAMTS19 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.436 (Fisher's exact test), Q value = 0.76

Table S5006.  Gene #456: 'ADAMTS19 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ADAMTS19 MUTATED 3 3 3 4 5 0 3 1 2
ADAMTS19 WILD-TYPE 37 59 25 76 64 48 40 27 72
'ADAMTS19 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.439 (Fisher's exact test), Q value = 0.77

Table S5007.  Gene #456: 'ADAMTS19 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
ADAMTS19 MUTATED 3 1 3 0
ADAMTS19 WILD-TYPE 30 30 24 19
'ADAMTS19 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.64 (Fisher's exact test), Q value = 0.93

Table S5008.  Gene #456: 'ADAMTS19 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
ADAMTS19 MUTATED 3 0 3 1
ADAMTS19 WILD-TYPE 51 10 21 21
'CLVS2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00766 (Fisher's exact test), Q value = 0.082

Table S5009.  Gene #457: 'CLVS2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
CLVS2 MUTATED 0 0 0 3
CLVS2 WILD-TYPE 46 58 64 40

Figure S1548.  Get High-res Image Gene #457: 'CLVS2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'CLVS2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.185 (Fisher's exact test), Q value = 0.49

Table S5010.  Gene #457: 'CLVS2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
CLVS2 MUTATED 2 0 1
CLVS2 WILD-TYPE 49 83 76
'CLVS2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.248 (Fisher's exact test), Q value = 0.57

Table S5011.  Gene #457: 'CLVS2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
CLVS2 MUTATED 6 2 1 1
CLVS2 WILD-TYPE 172 181 100 19
'CLVS2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.572 (Fisher's exact test), Q value = 0.88

Table S5012.  Gene #457: 'CLVS2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
CLVS2 MUTATED 1 3 3
CLVS2 WILD-TYPE 86 77 97
'CLVS2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.76 (Fisher's exact test), Q value = 1

Table S5013.  Gene #457: 'CLVS2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
CLVS2 MUTATED 3 3 3
CLVS2 WILD-TYPE 86 157 135
'CLVS2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.45 (Fisher's exact test), Q value = 0.78

Table S5014.  Gene #457: 'CLVS2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
CLVS2 MUTATED 3 3 3
CLVS2 WILD-TYPE 179 130 69
'CLVS2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.945 (Fisher's exact test), Q value = 1

Table S5015.  Gene #457: 'CLVS2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
CLVS2 MUTATED 3 2 2 3
CLVS2 WILD-TYPE 109 94 90 183
'CLVS2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0448 (Fisher's exact test), Q value = 0.23

Table S5016.  Gene #457: 'CLVS2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
CLVS2 MUTATED 4 0 2 1 1 0 2
CLVS2 WILD-TYPE 56 50 47 39 62 125 97

Figure S1549.  Get High-res Image Gene #457: 'CLVS2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CLVS2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0192 (Fisher's exact test), Q value = 0.14

Table S5017.  Gene #457: 'CLVS2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
CLVS2 MUTATED 7 0 0 2
CLVS2 WILD-TYPE 123 78 68 194

Figure S1550.  Get High-res Image Gene #457: 'CLVS2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'CLVS2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0842 (Fisher's exact test), Q value = 0.31

Table S5018.  Gene #457: 'CLVS2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
CLVS2 MUTATED 2 0 0 1 4 2 0 0 0
CLVS2 WILD-TYPE 38 62 28 79 65 46 43 28 74
'GTF3C3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.122 (Fisher's exact test), Q value = 0.39

Table S5019.  Gene #458: 'GTF3C3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
GTF3C3 MUTATED 1 1 0 3
GTF3C3 WILD-TYPE 45 57 64 40
'GTF3C3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S5020.  Gene #458: 'GTF3C3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
GTF3C3 MUTATED 1 2 2
GTF3C3 WILD-TYPE 50 81 75
'GTF3C3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.083 (Fisher's exact test), Q value = 0.31

Table S5021.  Gene #458: 'GTF3C3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
GTF3C3 MUTATED 12 5 1 0
GTF3C3 WILD-TYPE 166 178 100 20
'GTF3C3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.13 (Fisher's exact test), Q value = 0.4

Table S5022.  Gene #458: 'GTF3C3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
GTF3C3 MUTATED 7 1 5
GTF3C3 WILD-TYPE 80 79 95
'GTF3C3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0689 (Fisher's exact test), Q value = 0.28

Table S5023.  Gene #458: 'GTF3C3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
GTF3C3 MUTATED 0 7 7
GTF3C3 WILD-TYPE 89 153 131
'GTF3C3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.134 (Fisher's exact test), Q value = 0.41

Table S5024.  Gene #458: 'GTF3C3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
GTF3C3 MUTATED 7 7 0
GTF3C3 WILD-TYPE 175 126 72
'GTF3C3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.153 (Fisher's exact test), Q value = 0.44

Table S5025.  Gene #458: 'GTF3C3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
GTF3C3 MUTATED 2 4 7 5
GTF3C3 WILD-TYPE 110 92 85 181
'GTF3C3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0347 (Fisher's exact test), Q value = 0.19

Table S5026.  Gene #458: 'GTF3C3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
GTF3C3 MUTATED 2 3 6 1 2 1 3
GTF3C3 WILD-TYPE 58 47 43 39 61 124 96

Figure S1551.  Get High-res Image Gene #458: 'GTF3C3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'GTF3C3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0792 (Fisher's exact test), Q value = 0.3

Table S5027.  Gene #458: 'GTF3C3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
GTF3C3 MUTATED 6 6 0 6
GTF3C3 WILD-TYPE 124 72 68 190
'GTF3C3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.523 (Fisher's exact test), Q value = 0.84

Table S5028.  Gene #458: 'GTF3C3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
GTF3C3 MUTATED 1 2 3 4 4 1 2 0 1
GTF3C3 WILD-TYPE 39 60 25 76 65 47 41 28 73
'GTF3C3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.306 (Fisher's exact test), Q value = 0.64

Table S5029.  Gene #458: 'GTF3C3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
GTF3C3 MUTATED 3 1 0 2
GTF3C3 WILD-TYPE 30 30 27 17
'GTF3C3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.685 (Fisher's exact test), Q value = 0.96

Table S5030.  Gene #458: 'GTF3C3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
GTF3C3 MUTATED 4 0 2 0
GTF3C3 WILD-TYPE 50 10 22 22
'BAI3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0599 (Fisher's exact test), Q value = 0.27

Table S5031.  Gene #459: 'BAI3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
BAI3 MUTATED 6 2 3 7
BAI3 WILD-TYPE 40 56 61 36
'BAI3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0305 (Fisher's exact test), Q value = 0.18

Table S5032.  Gene #459: 'BAI3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
BAI3 MUTATED 9 6 3
BAI3 WILD-TYPE 42 77 74

Figure S1552.  Get High-res Image Gene #459: 'BAI3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'BAI3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.172 (Fisher's exact test), Q value = 0.47

Table S5033.  Gene #459: 'BAI3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
BAI3 MUTATED 27 16 8 2
BAI3 WILD-TYPE 151 167 93 18
'BAI3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.123 (Fisher's exact test), Q value = 0.39

Table S5034.  Gene #459: 'BAI3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
BAI3 MUTATED 10 7 19
BAI3 WILD-TYPE 77 73 81
'BAI3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.164 (Fisher's exact test), Q value = 0.46

Table S5035.  Gene #459: 'BAI3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
BAI3 MUTATED 5 20 18
BAI3 WILD-TYPE 84 140 120
'BAI3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.164 (Fisher's exact test), Q value = 0.46

Table S5036.  Gene #459: 'BAI3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
BAI3 MUTATED 25 14 4
BAI3 WILD-TYPE 157 119 68
'BAI3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.585 (Fisher's exact test), Q value = 0.89

Table S5037.  Gene #459: 'BAI3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
BAI3 MUTATED 12 12 13 17
BAI3 WILD-TYPE 100 84 79 169
'BAI3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0612 (Fisher's exact test), Q value = 0.27

Table S5038.  Gene #459: 'BAI3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
BAI3 MUTATED 11 6 9 4 6 6 12
BAI3 WILD-TYPE 49 44 40 36 57 119 87
'BAI3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.194 (Fisher's exact test), Q value = 0.5

Table S5039.  Gene #459: 'BAI3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
BAI3 MUTATED 19 7 10 16
BAI3 WILD-TYPE 111 71 58 180
'BAI3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0202 (Fisher's exact test), Q value = 0.14

Table S5040.  Gene #459: 'BAI3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
BAI3 MUTATED 4 10 2 2 13 6 8 2 5
BAI3 WILD-TYPE 36 52 26 78 56 42 35 26 69

Figure S1553.  Get High-res Image Gene #459: 'BAI3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'BAI3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0685 (Fisher's exact test), Q value = 0.28

Table S5041.  Gene #459: 'BAI3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
BAI3 MUTATED 3 1 5 5
BAI3 WILD-TYPE 30 30 22 14
'BAI3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.441 (Fisher's exact test), Q value = 0.77

Table S5042.  Gene #459: 'BAI3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
BAI3 MUTATED 6 0 5 3
BAI3 WILD-TYPE 48 10 19 19
'AURKA MUTATION STATUS' versus 'CN_CNMF'

P value = 0.619 (Fisher's exact test), Q value = 0.92

Table S5043.  Gene #460: 'AURKA MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
AURKA MUTATED 3 4 0 0
AURKA WILD-TYPE 175 179 101 20
'AURKA MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.74 (Fisher's exact test), Q value = 1

Table S5044.  Gene #460: 'AURKA MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
AURKA MUTATED 2 2 1
AURKA WILD-TYPE 85 78 99
'AURKA MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.265 (Fisher's exact test), Q value = 0.59

Table S5045.  Gene #460: 'AURKA MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
AURKA MUTATED 2 1 4
AURKA WILD-TYPE 87 159 134
'AURKA MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S5046.  Gene #460: 'AURKA MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
AURKA MUTATED 4 2 1
AURKA WILD-TYPE 178 131 71
'AURKA MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.253 (Fisher's exact test), Q value = 0.58

Table S5047.  Gene #460: 'AURKA MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
AURKA MUTATED 2 0 3 2
AURKA WILD-TYPE 110 96 89 184
'AURKA MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.241 (Fisher's exact test), Q value = 0.57

Table S5048.  Gene #460: 'AURKA MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
AURKA MUTATED 2 1 1 1 0 0 2
AURKA WILD-TYPE 58 49 48 39 63 125 97
'AURKA MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.398 (Fisher's exact test), Q value = 0.72

Table S5049.  Gene #460: 'AURKA MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
AURKA MUTATED 1 2 2 2
AURKA WILD-TYPE 129 76 66 194
'AURKA MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0564 (Fisher's exact test), Q value = 0.26

Table S5050.  Gene #460: 'AURKA MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
AURKA MUTATED 0 2 0 0 2 0 3 0 0
AURKA WILD-TYPE 40 60 28 80 67 48 40 28 74
'AURKA MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.111 (Fisher's exact test), Q value = 0.37

Table S5051.  Gene #460: 'AURKA MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
AURKA MUTATED 3 0 0 0
AURKA WILD-TYPE 30 31 27 19
'AURKA MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.563 (Fisher's exact test), Q value = 0.87

Table S5052.  Gene #460: 'AURKA MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
AURKA MUTATED 3 0 0 0
AURKA WILD-TYPE 51 10 24 22
'RBM7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.687 (Fisher's exact test), Q value = 0.96

Table S5053.  Gene #461: 'RBM7 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
RBM7 MUTATED 6 4 1 0
RBM7 WILD-TYPE 172 179 100 20
'RBM7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S5054.  Gene #461: 'RBM7 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
RBM7 MUTATED 3 3 3
RBM7 WILD-TYPE 84 77 97
'RBM7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.123 (Fisher's exact test), Q value = 0.39

Table S5055.  Gene #461: 'RBM7 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
RBM7 MUTATED 0 3 6
RBM7 WILD-TYPE 89 157 132
'RBM7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.402 (Fisher's exact test), Q value = 0.73

Table S5056.  Gene #461: 'RBM7 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
RBM7 MUTATED 5 4 0
RBM7 WILD-TYPE 177 129 72
'RBM7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.253 (Fisher's exact test), Q value = 0.58

Table S5057.  Gene #461: 'RBM7 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
RBM7 MUTATED 4 4 1 2
RBM7 WILD-TYPE 108 92 91 184
'RBM7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.24 (Fisher's exact test), Q value = 0.56

Table S5058.  Gene #461: 'RBM7 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
RBM7 MUTATED 1 3 1 1 3 1 1
RBM7 WILD-TYPE 59 47 48 39 60 124 98
'RBM7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.358 (Fisher's exact test), Q value = 0.69

Table S5059.  Gene #461: 'RBM7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
RBM7 MUTATED 3 3 2 2
RBM7 WILD-TYPE 127 75 66 194
'RBM7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.736 (Fisher's exact test), Q value = 1

Table S5060.  Gene #461: 'RBM7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
RBM7 MUTATED 1 3 0 2 1 0 2 0 1
RBM7 WILD-TYPE 39 59 28 78 68 48 41 28 73
'RBM7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.704 (Fisher's exact test), Q value = 0.98

Table S5061.  Gene #461: 'RBM7 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
RBM7 MUTATED 2 1 0 0
RBM7 WILD-TYPE 31 30 27 19
'RBM7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.377 (Fisher's exact test), Q value = 0.71

Table S5062.  Gene #461: 'RBM7 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
RBM7 MUTATED 2 1 0 0
RBM7 WILD-TYPE 52 9 24 22
'CNTNAP5 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0701 (Fisher's exact test), Q value = 0.29

Table S5063.  Gene #462: 'CNTNAP5 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
CNTNAP5 MUTATED 3 0 1 3
CNTNAP5 WILD-TYPE 43 58 63 40
'CNTNAP5 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.43 (Fisher's exact test), Q value = 0.76

Table S5064.  Gene #462: 'CNTNAP5 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
CNTNAP5 MUTATED 3 3 1
CNTNAP5 WILD-TYPE 48 80 76
'CNTNAP5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0128 (Fisher's exact test), Q value = 0.11

Table S5065.  Gene #462: 'CNTNAP5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
CNTNAP5 MUTATED 28 12 6 1
CNTNAP5 WILD-TYPE 150 171 95 19

Figure S1554.  Get High-res Image Gene #462: 'CNTNAP5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'CNTNAP5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S5066.  Gene #462: 'CNTNAP5 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
CNTNAP5 MUTATED 13 11 14
CNTNAP5 WILD-TYPE 74 69 86
'CNTNAP5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.482 (Fisher's exact test), Q value = 0.81

Table S5067.  Gene #462: 'CNTNAP5 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
CNTNAP5 MUTATED 6 17 16
CNTNAP5 WILD-TYPE 83 143 122
'CNTNAP5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.682 (Fisher's exact test), Q value = 0.96

Table S5068.  Gene #462: 'CNTNAP5 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
CNTNAP5 MUTATED 17 16 6
CNTNAP5 WILD-TYPE 165 117 66
'CNTNAP5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0271 (Fisher's exact test), Q value = 0.17

Table S5069.  Gene #462: 'CNTNAP5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
CNTNAP5 MUTATED 10 14 13 10
CNTNAP5 WILD-TYPE 102 82 79 176

Figure S1555.  Get High-res Image Gene #462: 'CNTNAP5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'CNTNAP5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00024 (Fisher's exact test), Q value = 0.0094

Table S5070.  Gene #462: 'CNTNAP5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
CNTNAP5 MUTATED 7 9 13 3 5 4 6
CNTNAP5 WILD-TYPE 53 41 36 37 58 121 93

Figure S1556.  Get High-res Image Gene #462: 'CNTNAP5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CNTNAP5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0118 (Fisher's exact test), Q value = 0.11

Table S5071.  Gene #462: 'CNTNAP5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
CNTNAP5 MUTATED 16 14 5 11
CNTNAP5 WILD-TYPE 114 64 63 185

Figure S1557.  Get High-res Image Gene #462: 'CNTNAP5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'CNTNAP5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.425 (Fisher's exact test), Q value = 0.75

Table S5072.  Gene #462: 'CNTNAP5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
CNTNAP5 MUTATED 5 10 2 6 10 4 4 1 4
CNTNAP5 WILD-TYPE 35 52 26 74 59 44 39 27 70
'CNTNAP5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0685 (Fisher's exact test), Q value = 0.28

Table S5073.  Gene #462: 'CNTNAP5 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
CNTNAP5 MUTATED 3 4 3 7
CNTNAP5 WILD-TYPE 30 27 24 12
'CNTNAP5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0762 (Fisher's exact test), Q value = 0.3

Table S5074.  Gene #462: 'CNTNAP5 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
CNTNAP5 MUTATED 11 1 5 0
CNTNAP5 WILD-TYPE 43 9 19 22
'TMPRSS15 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00041 (Fisher's exact test), Q value = 0.013

Table S5075.  Gene #463: 'TMPRSS15 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
TMPRSS15 MUTATED 2 0 0 6
TMPRSS15 WILD-TYPE 44 58 64 37

Figure S1558.  Get High-res Image Gene #463: 'TMPRSS15 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'TMPRSS15 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.048 (Fisher's exact test), Q value = 0.23

Table S5076.  Gene #463: 'TMPRSS15 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
TMPRSS15 MUTATED 5 1 2
TMPRSS15 WILD-TYPE 46 82 75

Figure S1559.  Get High-res Image Gene #463: 'TMPRSS15 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'TMPRSS15 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0338 (Fisher's exact test), Q value = 0.19

Table S5077.  Gene #463: 'TMPRSS15 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
TMPRSS15 MUTATED 17 6 3 0
TMPRSS15 WILD-TYPE 161 177 98 20

Figure S1560.  Get High-res Image Gene #463: 'TMPRSS15 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'TMPRSS15 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.909 (Fisher's exact test), Q value = 1

Table S5078.  Gene #463: 'TMPRSS15 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
TMPRSS15 MUTATED 5 6 7
TMPRSS15 WILD-TYPE 82 74 93
'TMPRSS15 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.371 (Fisher's exact test), Q value = 0.7

Table S5079.  Gene #463: 'TMPRSS15 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
TMPRSS15 MUTATED 4 13 6
TMPRSS15 WILD-TYPE 85 147 132
'TMPRSS15 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.633 (Fisher's exact test), Q value = 0.93

Table S5080.  Gene #463: 'TMPRSS15 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
TMPRSS15 MUTATED 10 10 3
TMPRSS15 WILD-TYPE 172 123 69
'TMPRSS15 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.427 (Fisher's exact test), Q value = 0.75

Table S5081.  Gene #463: 'TMPRSS15 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
TMPRSS15 MUTATED 4 8 5 8
TMPRSS15 WILD-TYPE 108 88 87 178
'TMPRSS15 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0888 (Fisher's exact test), Q value = 0.32

Table S5082.  Gene #463: 'TMPRSS15 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
TMPRSS15 MUTATED 3 4 3 3 3 1 8
TMPRSS15 WILD-TYPE 57 46 46 37 60 124 91
'TMPRSS15 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.925 (Fisher's exact test), Q value = 1

Table S5083.  Gene #463: 'TMPRSS15 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
TMPRSS15 MUTATED 7 3 4 12
TMPRSS15 WILD-TYPE 123 75 64 184
'TMPRSS15 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0324 (Fisher's exact test), Q value = 0.18

Table S5084.  Gene #463: 'TMPRSS15 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
TMPRSS15 MUTATED 1 4 3 4 10 1 2 0 1
TMPRSS15 WILD-TYPE 39 58 25 76 59 47 41 28 73

Figure S1561.  Get High-res Image Gene #463: 'TMPRSS15 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'TMPRSS15 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0838 (Fisher's exact test), Q value = 0.31

Table S5085.  Gene #463: 'TMPRSS15 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
TMPRSS15 MUTATED 1 1 3 4
TMPRSS15 WILD-TYPE 32 30 24 15
'TMPRSS15 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.347 (Fisher's exact test), Q value = 0.68

Table S5086.  Gene #463: 'TMPRSS15 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
TMPRSS15 MUTATED 3 1 4 1
TMPRSS15 WILD-TYPE 51 9 20 21
'EGFR MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.164 (Fisher's exact test), Q value = 0.46

Table S5087.  Gene #464: 'EGFR MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
EGFR MUTATED 5 1 2 3
EGFR WILD-TYPE 41 57 62 40
'EGFR MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0101 (Fisher's exact test), Q value = 0.096

Table S5088.  Gene #464: 'EGFR MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
EGFR MUTATED 7 3 1
EGFR WILD-TYPE 44 80 76

Figure S1562.  Get High-res Image Gene #464: 'EGFR MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'EGFR MUTATION STATUS' versus 'CN_CNMF'

P value = 0.199 (Fisher's exact test), Q value = 0.5

Table S5089.  Gene #464: 'EGFR MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
EGFR MUTATED 27 32 17 7
EGFR WILD-TYPE 151 151 84 13
'EGFR MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.39 (Fisher's exact test), Q value = 0.72

Table S5090.  Gene #464: 'EGFR MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
EGFR MUTATED 20 26 26
EGFR WILD-TYPE 67 54 74
'EGFR MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0169 (Fisher's exact test), Q value = 0.13

Table S5091.  Gene #464: 'EGFR MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
EGFR MUTATED 8 32 32
EGFR WILD-TYPE 81 128 106

Figure S1563.  Get High-res Image Gene #464: 'EGFR MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'EGFR MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.442 (Fisher's exact test), Q value = 0.77

Table S5092.  Gene #464: 'EGFR MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
EGFR MUTATED 38 24 10
EGFR WILD-TYPE 144 109 62
'EGFR MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S5093.  Gene #464: 'EGFR MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
EGFR MUTATED 34 16 22 12
EGFR WILD-TYPE 78 80 70 174

Figure S1564.  Get High-res Image Gene #464: 'EGFR MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'EGFR MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S5094.  Gene #464: 'EGFR MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
EGFR MUTATED 24 13 12 6 18 3 8
EGFR WILD-TYPE 36 37 37 34 45 122 91

Figure S1565.  Get High-res Image Gene #464: 'EGFR MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'EGFR MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S5095.  Gene #464: 'EGFR MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
EGFR MUTATED 41 17 11 12
EGFR WILD-TYPE 89 61 57 184

Figure S1566.  Get High-res Image Gene #464: 'EGFR MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'EGFR MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 2e-05 (Fisher's exact test), Q value = 0.0017

Table S5096.  Gene #464: 'EGFR MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
EGFR MUTATED 11 18 8 13 10 8 11 0 2
EGFR WILD-TYPE 29 44 20 67 59 40 32 28 72

Figure S1567.  Get High-res Image Gene #464: 'EGFR MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'EGFR MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.312 (Fisher's exact test), Q value = 0.64

Table S5097.  Gene #464: 'EGFR MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
EGFR MUTATED 12 9 4 5
EGFR WILD-TYPE 21 22 23 14
'EGFR MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.635 (Fisher's exact test), Q value = 0.93

Table S5098.  Gene #464: 'EGFR MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
EGFR MUTATED 18 2 5 5
EGFR WILD-TYPE 36 8 19 17
'CTBP2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.104 (Fisher's exact test), Q value = 0.36

Table S5099.  Gene #465: 'CTBP2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
CTBP2 MUTATED 6 1 0 0
CTBP2 WILD-TYPE 172 182 101 20
'CTBP2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.635 (Fisher's exact test), Q value = 0.93

Table S5100.  Gene #465: 'CTBP2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
CTBP2 MUTATED 2 1 4
CTBP2 WILD-TYPE 85 79 96
'CTBP2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S5101.  Gene #465: 'CTBP2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
CTBP2 MUTATED 1 3 2
CTBP2 WILD-TYPE 88 157 136
'CTBP2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S5102.  Gene #465: 'CTBP2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
CTBP2 MUTATED 3 2 1
CTBP2 WILD-TYPE 179 131 71
'CTBP2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0218 (Fisher's exact test), Q value = 0.15

Table S5103.  Gene #465: 'CTBP2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
CTBP2 MUTATED 1 3 3 0
CTBP2 WILD-TYPE 111 93 89 186

Figure S1568.  Get High-res Image Gene #465: 'CTBP2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'CTBP2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0062 (Fisher's exact test), Q value = 0.072

Table S5104.  Gene #465: 'CTBP2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
CTBP2 MUTATED 1 0 3 2 1 0 0
CTBP2 WILD-TYPE 59 50 46 38 62 125 99

Figure S1569.  Get High-res Image Gene #465: 'CTBP2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CTBP2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.483 (Fisher's exact test), Q value = 0.81

Table S5105.  Gene #465: 'CTBP2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
CTBP2 MUTATED 3 2 0 2
CTBP2 WILD-TYPE 127 76 68 194
'CTBP2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.635 (Fisher's exact test), Q value = 0.93

Table S5106.  Gene #465: 'CTBP2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
CTBP2 MUTATED 1 1 0 1 3 1 0 0 0
CTBP2 WILD-TYPE 39 61 28 79 66 47 43 28 74
'APOB MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00121 (Fisher's exact test), Q value = 0.028

Table S5107.  Gene #466: 'APOB MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
APOB MUTATED 5 3 1 10
APOB WILD-TYPE 41 55 63 33

Figure S1570.  Get High-res Image Gene #466: 'APOB MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'APOB MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.013 (Fisher's exact test), Q value = 0.11

Table S5108.  Gene #466: 'APOB MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
APOB MUTATED 10 6 3
APOB WILD-TYPE 41 77 74

Figure S1571.  Get High-res Image Gene #466: 'APOB MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'APOB MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00055 (Fisher's exact test), Q value = 0.016

Table S5109.  Gene #466: 'APOB MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
APOB MUTATED 39 17 7 4
APOB WILD-TYPE 139 166 94 16

Figure S1572.  Get High-res Image Gene #466: 'APOB MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'APOB MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0661 (Fisher's exact test), Q value = 0.28

Table S5110.  Gene #466: 'APOB MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
APOB MUTATED 15 8 23
APOB WILD-TYPE 72 72 77
'APOB MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.335 (Fisher's exact test), Q value = 0.66

Table S5111.  Gene #466: 'APOB MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
APOB MUTATED 9 27 22
APOB WILD-TYPE 80 133 116
'APOB MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.896 (Fisher's exact test), Q value = 1

Table S5112.  Gene #466: 'APOB MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
APOB MUTATED 27 19 12
APOB WILD-TYPE 155 114 60
'APOB MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0789 (Fisher's exact test), Q value = 0.3

Table S5113.  Gene #466: 'APOB MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
APOB MUTATED 16 17 17 17
APOB WILD-TYPE 96 79 75 169
'APOB MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00112 (Fisher's exact test), Q value = 0.026

Table S5114.  Gene #466: 'APOB MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
APOB MUTATED 11 6 13 5 12 5 15
APOB WILD-TYPE 49 44 36 35 51 120 84

Figure S1573.  Get High-res Image Gene #466: 'APOB MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'APOB MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.165 (Fisher's exact test), Q value = 0.46

Table S5115.  Gene #466: 'APOB MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
APOB MUTATED 25 11 6 23
APOB WILD-TYPE 105 67 62 173
'APOB MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0729 (Fisher's exact test), Q value = 0.29

Table S5116.  Gene #466: 'APOB MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
APOB MUTATED 7 11 4 13 15 6 4 2 3
APOB WILD-TYPE 33 51 24 67 54 42 39 26 71
'APOB MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.722 (Fisher's exact test), Q value = 0.99

Table S5117.  Gene #466: 'APOB MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
APOB MUTATED 3 5 5 2
APOB WILD-TYPE 30 26 22 17
'APOB MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.771 (Fisher's exact test), Q value = 1

Table S5118.  Gene #466: 'APOB MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
APOB MUTATED 7 2 4 2
APOB WILD-TYPE 47 8 20 20
'EPHA3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00019 (Fisher's exact test), Q value = 0.008

Table S5119.  Gene #467: 'EPHA3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
EPHA3 MUTATED 11 2 1 4
EPHA3 WILD-TYPE 35 56 63 39

Figure S1574.  Get High-res Image Gene #467: 'EPHA3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'EPHA3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0411 (Fisher's exact test), Q value = 0.21

Table S5120.  Gene #467: 'EPHA3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
EPHA3 MUTATED 9 5 4
EPHA3 WILD-TYPE 42 78 73

Figure S1575.  Get High-res Image Gene #467: 'EPHA3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'EPHA3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0314 (Fisher's exact test), Q value = 0.18

Table S5121.  Gene #467: 'EPHA3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
EPHA3 MUTATED 34 17 10 3
EPHA3 WILD-TYPE 144 166 91 17

Figure S1576.  Get High-res Image Gene #467: 'EPHA3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'EPHA3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.123 (Fisher's exact test), Q value = 0.39

Table S5122.  Gene #467: 'EPHA3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
EPHA3 MUTATED 15 9 23
EPHA3 WILD-TYPE 72 71 77
'EPHA3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00645 (Fisher's exact test), Q value = 0.074

Table S5123.  Gene #467: 'EPHA3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
EPHA3 MUTATED 5 22 28
EPHA3 WILD-TYPE 84 138 110

Figure S1577.  Get High-res Image Gene #467: 'EPHA3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'EPHA3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.841 (Fisher's exact test), Q value = 1

Table S5124.  Gene #467: 'EPHA3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
EPHA3 MUTATED 27 17 11
EPHA3 WILD-TYPE 155 116 61
'EPHA3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.139 (Fisher's exact test), Q value = 0.41

Table S5125.  Gene #467: 'EPHA3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
EPHA3 MUTATED 14 18 15 18
EPHA3 WILD-TYPE 98 78 77 168
'EPHA3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 3e-05 (Fisher's exact test), Q value = 0.0022

Table S5126.  Gene #467: 'EPHA3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
EPHA3 MUTATED 9 9 17 4 7 4 15
EPHA3 WILD-TYPE 51 41 32 36 56 121 84

Figure S1578.  Get High-res Image Gene #467: 'EPHA3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'EPHA3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.161 (Fisher's exact test), Q value = 0.45

Table S5127.  Gene #467: 'EPHA3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
EPHA3 MUTATED 25 10 6 23
EPHA3 WILD-TYPE 105 68 62 173
'EPHA3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00735 (Fisher's exact test), Q value = 0.079

Table S5128.  Gene #467: 'EPHA3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
EPHA3 MUTATED 5 11 4 6 19 5 8 2 4
EPHA3 WILD-TYPE 35 51 24 74 50 43 35 26 70

Figure S1579.  Get High-res Image Gene #467: 'EPHA3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'EPHA3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.406 (Fisher's exact test), Q value = 0.73

Table S5129.  Gene #467: 'EPHA3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
EPHA3 MUTATED 3 5 5 5
EPHA3 WILD-TYPE 30 26 22 14
'EPHA3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.108 (Fisher's exact test), Q value = 0.36

Table S5130.  Gene #467: 'EPHA3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
EPHA3 MUTATED 5 1 7 5
EPHA3 WILD-TYPE 49 9 17 17
'PTPN11 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.308 (Fisher's exact test), Q value = 0.64

Table S5131.  Gene #468: 'PTPN11 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
PTPN11 MUTATED 1 1 0 2
PTPN11 WILD-TYPE 45 57 64 41
'PTPN11 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.557 (Fisher's exact test), Q value = 0.87

Table S5132.  Gene #468: 'PTPN11 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
PTPN11 MUTATED 2 1 1
PTPN11 WILD-TYPE 49 82 76
'PTPN11 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.832 (Fisher's exact test), Q value = 1

Table S5133.  Gene #468: 'PTPN11 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
PTPN11 MUTATED 16 16 6 1
PTPN11 WILD-TYPE 162 167 95 19
'PTPN11 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0414 (Fisher's exact test), Q value = 0.21

Table S5134.  Gene #468: 'PTPN11 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
PTPN11 MUTATED 6 16 14
PTPN11 WILD-TYPE 81 64 86

Figure S1580.  Get High-res Image Gene #468: 'PTPN11 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'PTPN11 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.141 (Fisher's exact test), Q value = 0.42

Table S5135.  Gene #468: 'PTPN11 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
PTPN11 MUTATED 4 19 11
PTPN11 WILD-TYPE 85 141 127
'PTPN11 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.17 (Fisher's exact test), Q value = 0.47

Table S5136.  Gene #468: 'PTPN11 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
PTPN11 MUTATED 15 16 3
PTPN11 WILD-TYPE 167 117 69
'PTPN11 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00052 (Fisher's exact test), Q value = 0.016

Table S5137.  Gene #468: 'PTPN11 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
PTPN11 MUTATED 17 11 7 5
PTPN11 WILD-TYPE 95 85 85 181

Figure S1581.  Get High-res Image Gene #468: 'PTPN11 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'PTPN11 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S5138.  Gene #468: 'PTPN11 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
PTPN11 MUTATED 11 10 7 3 5 2 2
PTPN11 WILD-TYPE 49 40 42 37 58 123 97

Figure S1582.  Get High-res Image Gene #468: 'PTPN11 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'PTPN11 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00079 (Fisher's exact test), Q value = 0.021

Table S5139.  Gene #468: 'PTPN11 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
PTPN11 MUTATED 17 7 10 6
PTPN11 WILD-TYPE 113 71 58 190

Figure S1583.  Get High-res Image Gene #468: 'PTPN11 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'PTPN11 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0058 (Fisher's exact test), Q value = 0.069

Table S5140.  Gene #468: 'PTPN11 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
PTPN11 MUTATED 4 6 3 10 6 3 8 0 0
PTPN11 WILD-TYPE 36 56 25 70 63 45 35 28 74

Figure S1584.  Get High-res Image Gene #468: 'PTPN11 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'PTPN11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.122 (Fisher's exact test), Q value = 0.39

Table S5141.  Gene #468: 'PTPN11 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
PTPN11 MUTATED 3 2 7 4
PTPN11 WILD-TYPE 30 29 20 15
'PTPN11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.114 (Fisher's exact test), Q value = 0.37

Table S5142.  Gene #468: 'PTPN11 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
PTPN11 MUTATED 5 3 6 2
PTPN11 WILD-TYPE 49 7 18 20
'KIAA1409 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 2e-05 (Fisher's exact test), Q value = 0.0017

Table S5143.  Gene #469: 'KIAA1409 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
KIAA1409 MUTATED 6 0 0 8
KIAA1409 WILD-TYPE 40 58 64 35

Figure S1585.  Get High-res Image Gene #469: 'KIAA1409 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'KIAA1409 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S5144.  Gene #469: 'KIAA1409 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
KIAA1409 MUTATED 11 1 2
KIAA1409 WILD-TYPE 40 82 75

Figure S1586.  Get High-res Image Gene #469: 'KIAA1409 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'KIAA1409 MUTATION STATUS' versus 'CN_CNMF'

P value = 9e-05 (Fisher's exact test), Q value = 0.0048

Table S5145.  Gene #469: 'KIAA1409 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
KIAA1409 MUTATED 28 6 5 3
KIAA1409 WILD-TYPE 150 177 96 17

Figure S1587.  Get High-res Image Gene #469: 'KIAA1409 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'KIAA1409 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.105 (Fisher's exact test), Q value = 0.36

Table S5146.  Gene #469: 'KIAA1409 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
KIAA1409 MUTATED 14 5 9
KIAA1409 WILD-TYPE 73 75 91
'KIAA1409 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.195 (Fisher's exact test), Q value = 0.5

Table S5147.  Gene #469: 'KIAA1409 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
KIAA1409 MUTATED 8 11 18
KIAA1409 WILD-TYPE 81 149 120
'KIAA1409 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.206 (Fisher's exact test), Q value = 0.51

Table S5148.  Gene #469: 'KIAA1409 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
KIAA1409 MUTATED 20 8 9
KIAA1409 WILD-TYPE 162 125 63
'KIAA1409 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0777 (Fisher's exact test), Q value = 0.3

Table S5149.  Gene #469: 'KIAA1409 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
KIAA1409 MUTATED 6 13 11 12
KIAA1409 WILD-TYPE 106 83 81 174
'KIAA1409 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S5150.  Gene #469: 'KIAA1409 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
KIAA1409 MUTATED 2 8 8 4 6 0 14
KIAA1409 WILD-TYPE 58 42 41 36 57 125 85

Figure S1588.  Get High-res Image Gene #469: 'KIAA1409 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'KIAA1409 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.258 (Fisher's exact test), Q value = 0.58

Table S5151.  Gene #469: 'KIAA1409 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
KIAA1409 MUTATED 14 7 2 19
KIAA1409 WILD-TYPE 116 71 66 177
'KIAA1409 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00078 (Fisher's exact test), Q value = 0.021

Table S5152.  Gene #469: 'KIAA1409 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
KIAA1409 MUTATED 1 11 4 4 13 1 5 1 2
KIAA1409 WILD-TYPE 39 51 24 76 56 47 38 27 72

Figure S1589.  Get High-res Image Gene #469: 'KIAA1409 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'KIAA1409 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.157 (Fisher's exact test), Q value = 0.45

Table S5153.  Gene #469: 'KIAA1409 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
KIAA1409 MUTATED 3 1 1 4
KIAA1409 WILD-TYPE 30 30 26 15
'KIAA1409 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.874 (Fisher's exact test), Q value = 1

Table S5154.  Gene #469: 'KIAA1409 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
KIAA1409 MUTATED 5 1 1 2
KIAA1409 WILD-TYPE 49 9 23 20
'DOCK1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00366 (Fisher's exact test), Q value = 0.055

Table S5155.  Gene #470: 'DOCK1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
DOCK1 MUTATED 3 0 0 4
DOCK1 WILD-TYPE 43 58 64 39

Figure S1590.  Get High-res Image Gene #470: 'DOCK1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'DOCK1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.796 (Fisher's exact test), Q value = 1

Table S5156.  Gene #470: 'DOCK1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
DOCK1 MUTATED 2 2 3
DOCK1 WILD-TYPE 49 81 74
'DOCK1 MUTATION STATUS' versus 'CN_CNMF'

P value = 7e-05 (Fisher's exact test), Q value = 0.0041

Table S5157.  Gene #470: 'DOCK1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
DOCK1 MUTATED 20 1 4 1
DOCK1 WILD-TYPE 158 182 97 19

Figure S1591.  Get High-res Image Gene #470: 'DOCK1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'DOCK1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.468 (Fisher's exact test), Q value = 0.8

Table S5158.  Gene #470: 'DOCK1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
DOCK1 MUTATED 6 4 10
DOCK1 WILD-TYPE 81 76 90
'DOCK1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.666 (Fisher's exact test), Q value = 0.95

Table S5159.  Gene #470: 'DOCK1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
DOCK1 MUTATED 4 8 10
DOCK1 WILD-TYPE 85 152 128
'DOCK1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.618 (Fisher's exact test), Q value = 0.92

Table S5160.  Gene #470: 'DOCK1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
DOCK1 MUTATED 9 10 3
DOCK1 WILD-TYPE 173 123 69
'DOCK1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.406 (Fisher's exact test), Q value = 0.73

Table S5161.  Gene #470: 'DOCK1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
DOCK1 MUTATED 6 8 6 7
DOCK1 WILD-TYPE 106 88 86 179
'DOCK1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00023 (Fisher's exact test), Q value = 0.0091

Table S5162.  Gene #470: 'DOCK1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
DOCK1 MUTATED 7 3 9 0 1 2 5
DOCK1 WILD-TYPE 53 47 40 40 62 123 94

Figure S1592.  Get High-res Image Gene #470: 'DOCK1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'DOCK1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00267 (Fisher's exact test), Q value = 0.045

Table S5163.  Gene #470: 'DOCK1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
DOCK1 MUTATED 15 2 0 9
DOCK1 WILD-TYPE 115 76 68 187

Figure S1593.  Get High-res Image Gene #470: 'DOCK1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'DOCK1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00869 (Fisher's exact test), Q value = 0.087

Table S5164.  Gene #470: 'DOCK1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
DOCK1 MUTATED 3 2 3 4 11 1 1 0 1
DOCK1 WILD-TYPE 37 60 25 76 58 47 42 28 73

Figure S1594.  Get High-res Image Gene #470: 'DOCK1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'DOCK1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0922 (Fisher's exact test), Q value = 0.33

Table S5165.  Gene #470: 'DOCK1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
DOCK1 MUTATED 2 0 1 3
DOCK1 WILD-TYPE 31 31 26 16
'DOCK1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.921 (Fisher's exact test), Q value = 1

Table S5166.  Gene #470: 'DOCK1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
DOCK1 MUTATED 3 0 2 1
DOCK1 WILD-TYPE 51 10 22 21
'GRM8 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0229 (Fisher's exact test), Q value = 0.15

Table S5167.  Gene #471: 'GRM8 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
GRM8 MUTATED 2 0 0 3
GRM8 WILD-TYPE 44 58 64 40

Figure S1595.  Get High-res Image Gene #471: 'GRM8 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'GRM8 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.252 (Fisher's exact test), Q value = 0.58

Table S5168.  Gene #471: 'GRM8 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
GRM8 MUTATED 3 1 1
GRM8 WILD-TYPE 48 82 76
'GRM8 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00464 (Fisher's exact test), Q value = 0.062

Table S5169.  Gene #471: 'GRM8 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
GRM8 MUTATED 16 3 2 1
GRM8 WILD-TYPE 162 180 99 19

Figure S1596.  Get High-res Image Gene #471: 'GRM8 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'GRM8 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0206 (Fisher's exact test), Q value = 0.14

Table S5170.  Gene #471: 'GRM8 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
GRM8 MUTATED 10 1 6
GRM8 WILD-TYPE 77 79 94

Figure S1597.  Get High-res Image Gene #471: 'GRM8 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'GRM8 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.213 (Fisher's exact test), Q value = 0.52

Table S5171.  Gene #471: 'GRM8 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
GRM8 MUTATED 3 6 11
GRM8 WILD-TYPE 86 154 127
'GRM8 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.826 (Fisher's exact test), Q value = 1

Table S5172.  Gene #471: 'GRM8 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
GRM8 MUTATED 11 6 3
GRM8 WILD-TYPE 171 127 69
'GRM8 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0224 (Fisher's exact test), Q value = 0.15

Table S5173.  Gene #471: 'GRM8 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
GRM8 MUTATED 2 6 9 5
GRM8 WILD-TYPE 110 90 83 181

Figure S1598.  Get High-res Image Gene #471: 'GRM8 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'GRM8 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00019 (Fisher's exact test), Q value = 0.008

Table S5174.  Gene #471: 'GRM8 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
GRM8 MUTATED 2 2 9 1 4 0 4
GRM8 WILD-TYPE 58 48 40 39 59 125 95

Figure S1599.  Get High-res Image Gene #471: 'GRM8 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'GRM8 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0662 (Fisher's exact test), Q value = 0.28

Table S5175.  Gene #471: 'GRM8 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
GRM8 MUTATED 8 6 0 7
GRM8 WILD-TYPE 122 72 68 189
'GRM8 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00076 (Fisher's exact test), Q value = 0.02

Table S5176.  Gene #471: 'GRM8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
GRM8 MUTATED 4 7 1 0 7 0 1 0 1
GRM8 WILD-TYPE 36 55 27 80 62 48 42 28 73

Figure S1600.  Get High-res Image Gene #471: 'GRM8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'GRM8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.159 (Fisher's exact test), Q value = 0.45

Table S5177.  Gene #471: 'GRM8 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
GRM8 MUTATED 3 4 0 3
GRM8 WILD-TYPE 30 27 27 16
'GRM8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.303 (Fisher's exact test), Q value = 0.63

Table S5178.  Gene #471: 'GRM8 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
GRM8 MUTATED 7 1 2 0
GRM8 WILD-TYPE 47 9 22 22
'NTRK3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0176 (Fisher's exact test), Q value = 0.13

Table S5179.  Gene #472: 'NTRK3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
NTRK3 MUTATED 4 0 1 4
NTRK3 WILD-TYPE 42 58 63 39

Figure S1601.  Get High-res Image Gene #472: 'NTRK3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'NTRK3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.377 (Fisher's exact test), Q value = 0.71

Table S5180.  Gene #472: 'NTRK3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
NTRK3 MUTATED 4 3 2
NTRK3 WILD-TYPE 47 80 75
'NTRK3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.285 (Fisher's exact test), Q value = 0.61

Table S5181.  Gene #472: 'NTRK3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
NTRK3 MUTATED 16 9 5 0
NTRK3 WILD-TYPE 162 174 96 20
'NTRK3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.395 (Fisher's exact test), Q value = 0.72

Table S5182.  Gene #472: 'NTRK3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
NTRK3 MUTATED 5 5 11
NTRK3 WILD-TYPE 82 75 89
'NTRK3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.573 (Fisher's exact test), Q value = 0.88

Table S5183.  Gene #472: 'NTRK3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
NTRK3 MUTATED 4 13 11
NTRK3 WILD-TYPE 85 147 127
'NTRK3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.814 (Fisher's exact test), Q value = 1

Table S5184.  Gene #472: 'NTRK3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
NTRK3 MUTATED 13 11 4
NTRK3 WILD-TYPE 169 122 68
'NTRK3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.891 (Fisher's exact test), Q value = 1

Table S5185.  Gene #472: 'NTRK3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
NTRK3 MUTATED 8 7 6 10
NTRK3 WILD-TYPE 104 89 86 176
'NTRK3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0135 (Fisher's exact test), Q value = 0.11

Table S5186.  Gene #472: 'NTRK3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
NTRK3 MUTATED 5 2 5 7 3 2 7
NTRK3 WILD-TYPE 55 48 44 33 60 123 92

Figure S1602.  Get High-res Image Gene #472: 'NTRK3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'NTRK3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.657 (Fisher's exact test), Q value = 0.94

Table S5187.  Gene #472: 'NTRK3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
NTRK3 MUTATED 11 5 5 10
NTRK3 WILD-TYPE 119 73 63 186
'NTRK3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.555 (Fisher's exact test), Q value = 0.87

Table S5188.  Gene #472: 'NTRK3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
NTRK3 MUTATED 3 6 1 2 5 4 4 3 3
NTRK3 WILD-TYPE 37 56 27 78 64 44 39 25 71
'NTRK3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.921 (Fisher's exact test), Q value = 1

Table S5189.  Gene #472: 'NTRK3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
NTRK3 MUTATED 2 2 2 2
NTRK3 WILD-TYPE 31 29 25 17
'NTRK3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.772 (Fisher's exact test), Q value = 1

Table S5190.  Gene #472: 'NTRK3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
NTRK3 MUTATED 5 1 1 1
NTRK3 WILD-TYPE 49 9 23 21
'ANKRD30A MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0643 (Fisher's exact test), Q value = 0.28

Table S5191.  Gene #473: 'ANKRD30A MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ANKRD30A MUTATED 1 0 0 2
ANKRD30A WILD-TYPE 45 58 64 41
'ANKRD30A MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S5192.  Gene #473: 'ANKRD30A MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ANKRD30A MUTATED 1 1 1
ANKRD30A WILD-TYPE 50 82 76
'ANKRD30A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.647 (Fisher's exact test), Q value = 0.93

Table S5193.  Gene #473: 'ANKRD30A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ANKRD30A MUTATED 15 12 6 0
ANKRD30A WILD-TYPE 163 171 95 20
'ANKRD30A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.938 (Fisher's exact test), Q value = 1

Table S5194.  Gene #473: 'ANKRD30A MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ANKRD30A MUTATED 10 9 10
ANKRD30A WILD-TYPE 77 71 90
'ANKRD30A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0432 (Fisher's exact test), Q value = 0.22

Table S5195.  Gene #473: 'ANKRD30A MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ANKRD30A MUTATED 2 10 15
ANKRD30A WILD-TYPE 87 150 123

Figure S1603.  Get High-res Image Gene #473: 'ANKRD30A MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'ANKRD30A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0823 (Fisher's exact test), Q value = 0.31

Table S5196.  Gene #473: 'ANKRD30A MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ANKRD30A MUTATED 14 12 1
ANKRD30A WILD-TYPE 168 121 71
'ANKRD30A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00579 (Fisher's exact test), Q value = 0.069

Table S5197.  Gene #473: 'ANKRD30A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ANKRD30A MUTATED 12 9 8 4
ANKRD30A WILD-TYPE 100 87 84 182

Figure S1604.  Get High-res Image Gene #473: 'ANKRD30A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'ANKRD30A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 9e-05 (Fisher's exact test), Q value = 0.0048

Table S5198.  Gene #473: 'ANKRD30A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ANKRD30A MUTATED 8 9 4 1 7 1 3
ANKRD30A WILD-TYPE 52 41 45 39 56 124 96

Figure S1605.  Get High-res Image Gene #473: 'ANKRD30A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ANKRD30A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.145 (Fisher's exact test), Q value = 0.42

Table S5199.  Gene #473: 'ANKRD30A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ANKRD30A MUTATED 12 8 5 8
ANKRD30A WILD-TYPE 118 70 63 188
'ANKRD30A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.185 (Fisher's exact test), Q value = 0.49

Table S5200.  Gene #473: 'ANKRD30A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ANKRD30A MUTATED 4 9 3 5 5 1 3 0 3
ANKRD30A WILD-TYPE 36 53 25 75 64 47 40 28 71
'ANKRD30A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.251 (Fisher's exact test), Q value = 0.58

Table S5201.  Gene #473: 'ANKRD30A MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
ANKRD30A MUTATED 1 2 4 3
ANKRD30A WILD-TYPE 32 29 23 16
'ANKRD30A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.534 (Fisher's exact test), Q value = 0.85

Table S5202.  Gene #473: 'ANKRD30A MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
ANKRD30A MUTATED 5 2 2 1
ANKRD30A WILD-TYPE 49 8 22 21
'MYH1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0687 (Fisher's exact test), Q value = 0.28

Table S5203.  Gene #474: 'MYH1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
MYH1 MUTATED 3 0 2 4
MYH1 WILD-TYPE 43 58 62 39
'MYH1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.83 (Fisher's exact test), Q value = 1

Table S5204.  Gene #474: 'MYH1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
MYH1 MUTATED 3 3 3
MYH1 WILD-TYPE 48 80 74
'MYH1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.157 (Fisher's exact test), Q value = 0.45

Table S5205.  Gene #474: 'MYH1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
MYH1 MUTATED 18 9 9 0
MYH1 WILD-TYPE 160 174 92 20
'MYH1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.819 (Fisher's exact test), Q value = 1

Table S5206.  Gene #474: 'MYH1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
MYH1 MUTATED 10 7 10
MYH1 WILD-TYPE 77 73 90
'MYH1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.363 (Fisher's exact test), Q value = 0.69

Table S5207.  Gene #474: 'MYH1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
MYH1 MUTATED 5 10 14
MYH1 WILD-TYPE 84 150 124
'MYH1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.691 (Fisher's exact test), Q value = 0.97

Table S5208.  Gene #474: 'MYH1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
MYH1 MUTATED 16 9 4
MYH1 WILD-TYPE 166 124 68
'MYH1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.211 (Fisher's exact test), Q value = 0.52

Table S5209.  Gene #474: 'MYH1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
MYH1 MUTATED 8 11 8 9
MYH1 WILD-TYPE 104 85 84 177
'MYH1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0151 (Fisher's exact test), Q value = 0.12

Table S5210.  Gene #474: 'MYH1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
MYH1 MUTATED 5 8 7 2 6 3 5
MYH1 WILD-TYPE 55 42 42 38 57 122 94

Figure S1606.  Get High-res Image Gene #474: 'MYH1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'MYH1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.203 (Fisher's exact test), Q value = 0.51

Table S5211.  Gene #474: 'MYH1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
MYH1 MUTATED 15 6 5 10
MYH1 WILD-TYPE 115 72 63 186
'MYH1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.238 (Fisher's exact test), Q value = 0.56

Table S5212.  Gene #474: 'MYH1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
MYH1 MUTATED 4 6 2 6 9 1 5 1 2
MYH1 WILD-TYPE 36 56 26 74 60 47 38 27 72
'MYH1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.939 (Fisher's exact test), Q value = 1

Table S5213.  Gene #474: 'MYH1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
MYH1 MUTATED 3 2 3 2
MYH1 WILD-TYPE 30 29 24 17
'MYH1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.392 (Fisher's exact test), Q value = 0.72

Table S5214.  Gene #474: 'MYH1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
MYH1 MUTATED 3 1 4 2
MYH1 WILD-TYPE 51 9 20 20
'PHF3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00511 (Fisher's exact test), Q value = 0.064

Table S5215.  Gene #475: 'PHF3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
PHF3 MUTATED 4 0 0 3
PHF3 WILD-TYPE 42 58 64 40

Figure S1607.  Get High-res Image Gene #475: 'PHF3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'PHF3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0156 (Fisher's exact test), Q value = 0.12

Table S5216.  Gene #475: 'PHF3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
PHF3 MUTATED 5 1 1
PHF3 WILD-TYPE 46 82 76

Figure S1608.  Get High-res Image Gene #475: 'PHF3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'PHF3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.154 (Fisher's exact test), Q value = 0.44

Table S5217.  Gene #475: 'PHF3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
PHF3 MUTATED 14 5 5 1
PHF3 WILD-TYPE 164 178 96 19
'PHF3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.359 (Fisher's exact test), Q value = 0.69

Table S5218.  Gene #475: 'PHF3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
PHF3 MUTATED 8 3 6
PHF3 WILD-TYPE 79 77 94
'PHF3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0641 (Fisher's exact test), Q value = 0.27

Table S5219.  Gene #475: 'PHF3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
PHF3 MUTATED 3 7 14
PHF3 WILD-TYPE 86 153 124
'PHF3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.726 (Fisher's exact test), Q value = 0.99

Table S5220.  Gene #475: 'PHF3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
PHF3 MUTATED 13 8 3
PHF3 WILD-TYPE 169 125 69
'PHF3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0257 (Fisher's exact test), Q value = 0.16

Table S5221.  Gene #475: 'PHF3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
PHF3 MUTATED 5 1 10 9
PHF3 WILD-TYPE 107 95 82 177

Figure S1609.  Get High-res Image Gene #475: 'PHF3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'PHF3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00193 (Fisher's exact test), Q value = 0.037

Table S5222.  Gene #475: 'PHF3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
PHF3 MUTATED 4 3 5 0 5 0 8
PHF3 WILD-TYPE 56 47 44 40 58 125 91

Figure S1610.  Get High-res Image Gene #475: 'PHF3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'PHF3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0268 (Fisher's exact test), Q value = 0.17

Table S5223.  Gene #475: 'PHF3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
PHF3 MUTATED 12 4 0 8
PHF3 WILD-TYPE 118 74 68 188

Figure S1611.  Get High-res Image Gene #475: 'PHF3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'PHF3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0852 (Fisher's exact test), Q value = 0.32

Table S5224.  Gene #475: 'PHF3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
PHF3 MUTATED 2 6 3 6 5 1 0 0 1
PHF3 WILD-TYPE 38 56 25 74 64 47 43 28 73
'PHF3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.596 (Fisher's exact test), Q value = 0.9

Table S5225.  Gene #475: 'PHF3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
PHF3 MUTATED 1 1 2 2
PHF3 WILD-TYPE 32 30 25 17
'PHF3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S5226.  Gene #475: 'PHF3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
PHF3 MUTATED 4 0 1 1
PHF3 WILD-TYPE 50 10 23 21
'PLCB2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0178 (Fisher's exact test), Q value = 0.13

Table S5227.  Gene #476: 'PLCB2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
PLCB2 MUTATED 3 0 0 0
PLCB2 WILD-TYPE 43 58 64 43

Figure S1612.  Get High-res Image Gene #476: 'PLCB2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'PLCB2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0134 (Fisher's exact test), Q value = 0.11

Table S5228.  Gene #476: 'PLCB2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
PLCB2 MUTATED 3 0 0
PLCB2 WILD-TYPE 48 83 77

Figure S1613.  Get High-res Image Gene #476: 'PLCB2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'PLCB2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.625 (Fisher's exact test), Q value = 0.92

Table S5229.  Gene #476: 'PLCB2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
PLCB2 MUTATED 6 3 1 0
PLCB2 WILD-TYPE 172 180 100 20
'PLCB2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.118 (Fisher's exact test), Q value = 0.38

Table S5230.  Gene #476: 'PLCB2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
PLCB2 MUTATED 3 3 0
PLCB2 WILD-TYPE 84 77 100
'PLCB2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.279 (Fisher's exact test), Q value = 0.61

Table S5231.  Gene #476: 'PLCB2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
PLCB2 MUTATED 0 5 3
PLCB2 WILD-TYPE 89 155 135
'PLCB2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0118 (Fisher's exact test), Q value = 0.11

Table S5232.  Gene #476: 'PLCB2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
PLCB2 MUTATED 1 7 0
PLCB2 WILD-TYPE 181 126 72

Figure S1614.  Get High-res Image Gene #476: 'PLCB2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'PLCB2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.642 (Fisher's exact test), Q value = 0.93

Table S5233.  Gene #476: 'PLCB2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
PLCB2 MUTATED 4 2 1 3
PLCB2 WILD-TYPE 108 94 91 183
'PLCB2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00614 (Fisher's exact test), Q value = 0.072

Table S5234.  Gene #476: 'PLCB2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
PLCB2 MUTATED 4 3 0 0 0 0 3
PLCB2 WILD-TYPE 56 47 49 40 63 125 96

Figure S1615.  Get High-res Image Gene #476: 'PLCB2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'PLCB2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.908 (Fisher's exact test), Q value = 1

Table S5235.  Gene #476: 'PLCB2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
PLCB2 MUTATED 3 1 2 4
PLCB2 WILD-TYPE 127 77 66 192
'PLCB2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.517 (Fisher's exact test), Q value = 0.84

Table S5236.  Gene #476: 'PLCB2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
PLCB2 MUTATED 0 1 1 1 1 1 2 2 1
PLCB2 WILD-TYPE 40 61 27 79 68 47 41 26 73
'PTPRD MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00462 (Fisher's exact test), Q value = 0.062

Table S5237.  Gene #477: 'PTPRD MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
PTPRD MUTATED 6 1 0 3
PTPRD WILD-TYPE 40 57 64 40

Figure S1616.  Get High-res Image Gene #477: 'PTPRD MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'PTPRD MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0313 (Fisher's exact test), Q value = 0.18

Table S5238.  Gene #477: 'PTPRD MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
PTPRD MUTATED 6 3 1
PTPRD WILD-TYPE 45 80 76

Figure S1617.  Get High-res Image Gene #477: 'PTPRD MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'PTPRD MUTATION STATUS' versus 'CN_CNMF'

P value = 0.575 (Fisher's exact test), Q value = 0.88

Table S5239.  Gene #477: 'PTPRD MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
PTPRD MUTATED 17 11 8 2
PTPRD WILD-TYPE 161 172 93 18
'PTPRD MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.877 (Fisher's exact test), Q value = 1

Table S5240.  Gene #477: 'PTPRD MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
PTPRD MUTATED 10 7 11
PTPRD WILD-TYPE 77 73 89
'PTPRD MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.134 (Fisher's exact test), Q value = 0.41

Table S5241.  Gene #477: 'PTPRD MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
PTPRD MUTATED 5 9 16
PTPRD WILD-TYPE 84 151 122
'PTPRD MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.653 (Fisher's exact test), Q value = 0.94

Table S5242.  Gene #477: 'PTPRD MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
PTPRD MUTATED 16 8 6
PTPRD WILD-TYPE 166 125 66
'PTPRD MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.226 (Fisher's exact test), Q value = 0.54

Table S5243.  Gene #477: 'PTPRD MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
PTPRD MUTATED 13 9 6 10
PTPRD WILD-TYPE 99 87 86 176
'PTPRD MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.016 (Fisher's exact test), Q value = 0.13

Table S5244.  Gene #477: 'PTPRD MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
PTPRD MUTATED 6 7 8 4 3 3 7
PTPRD WILD-TYPE 54 43 41 36 60 122 92

Figure S1618.  Get High-res Image Gene #477: 'PTPRD MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'PTPRD MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0981 (Fisher's exact test), Q value = 0.34

Table S5245.  Gene #477: 'PTPRD MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
PTPRD MUTATED 17 5 3 12
PTPRD WILD-TYPE 113 73 65 184
'PTPRD MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00156 (Fisher's exact test), Q value = 0.033

Table S5246.  Gene #477: 'PTPRD MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
PTPRD MUTATED 4 5 7 6 9 1 3 2 0
PTPRD WILD-TYPE 36 57 21 74 60 47 40 26 74

Figure S1619.  Get High-res Image Gene #477: 'PTPRD MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'PTPRD MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.367 (Fisher's exact test), Q value = 0.7

Table S5247.  Gene #477: 'PTPRD MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
PTPRD MUTATED 4 1 1 0
PTPRD WILD-TYPE 29 30 26 19
'PTPRD MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S5248.  Gene #477: 'PTPRD MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
PTPRD MUTATED 4 0 1 1
PTPRD WILD-TYPE 50 10 23 21
'CSMD3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00966 (Fisher's exact test), Q value = 0.093

Table S5249.  Gene #478: 'CSMD3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
CSMD3 MUTATED 10 4 4 10
CSMD3 WILD-TYPE 36 54 60 33

Figure S1620.  Get High-res Image Gene #478: 'CSMD3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'CSMD3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00063 (Fisher's exact test), Q value = 0.018

Table S5250.  Gene #478: 'CSMD3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
CSMD3 MUTATED 15 9 4
CSMD3 WILD-TYPE 36 74 73

Figure S1621.  Get High-res Image Gene #478: 'CSMD3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'CSMD3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00495 (Fisher's exact test), Q value = 0.064

Table S5251.  Gene #478: 'CSMD3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
CSMD3 MUTATED 51 26 26 3
CSMD3 WILD-TYPE 127 157 75 17

Figure S1622.  Get High-res Image Gene #478: 'CSMD3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'CSMD3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.332 (Fisher's exact test), Q value = 0.66

Table S5252.  Gene #478: 'CSMD3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
CSMD3 MUTATED 26 19 34
CSMD3 WILD-TYPE 61 61 66
'CSMD3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.012 (Fisher's exact test), Q value = 0.11

Table S5253.  Gene #478: 'CSMD3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
CSMD3 MUTATED 14 31 43
CSMD3 WILD-TYPE 75 129 95

Figure S1623.  Get High-res Image Gene #478: 'CSMD3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'CSMD3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.831 (Fisher's exact test), Q value = 1

Table S5254.  Gene #478: 'CSMD3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
CSMD3 MUTATED 44 29 15
CSMD3 WILD-TYPE 138 104 57
'CSMD3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.014 (Fisher's exact test), Q value = 0.12

Table S5255.  Gene #478: 'CSMD3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
CSMD3 MUTATED 26 31 22 29
CSMD3 WILD-TYPE 86 65 70 157

Figure S1624.  Get High-res Image Gene #478: 'CSMD3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'CSMD3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S5256.  Gene #478: 'CSMD3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
CSMD3 MUTATED 18 15 21 10 12 10 22
CSMD3 WILD-TYPE 42 35 28 30 51 115 77

Figure S1625.  Get High-res Image Gene #478: 'CSMD3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CSMD3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.112 (Fisher's exact test), Q value = 0.37

Table S5257.  Gene #478: 'CSMD3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
CSMD3 MUTATED 34 20 18 33
CSMD3 WILD-TYPE 96 58 50 163
'CSMD3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00234 (Fisher's exact test), Q value = 0.042

Table S5258.  Gene #478: 'CSMD3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
CSMD3 MUTATED 7 18 10 21 22 6 11 1 9
CSMD3 WILD-TYPE 33 44 18 59 47 42 32 27 65

Figure S1626.  Get High-res Image Gene #478: 'CSMD3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'CSMD3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.689 (Fisher's exact test), Q value = 0.97

Table S5259.  Gene #478: 'CSMD3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
CSMD3 MUTATED 10 8 8 8
CSMD3 WILD-TYPE 23 23 19 11
'CSMD3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.892 (Fisher's exact test), Q value = 1

Table S5260.  Gene #478: 'CSMD3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
CSMD3 MUTATED 15 3 8 8
CSMD3 WILD-TYPE 39 7 16 14
'USH2A MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00181 (Fisher's exact test), Q value = 0.035

Table S5261.  Gene #479: 'USH2A MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
USH2A MUTATED 8 4 3 12
USH2A WILD-TYPE 38 54 61 31

Figure S1627.  Get High-res Image Gene #479: 'USH2A MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'USH2A MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0132 (Fisher's exact test), Q value = 0.11

Table S5262.  Gene #479: 'USH2A MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
USH2A MUTATED 13 8 6
USH2A WILD-TYPE 38 75 71

Figure S1628.  Get High-res Image Gene #479: 'USH2A MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'USH2A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00339 (Fisher's exact test), Q value = 0.053

Table S5263.  Gene #479: 'USH2A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
USH2A MUTATED 46 24 12 5
USH2A WILD-TYPE 132 159 89 15

Figure S1629.  Get High-res Image Gene #479: 'USH2A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'USH2A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0629 (Fisher's exact test), Q value = 0.27

Table S5264.  Gene #479: 'USH2A MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
USH2A MUTATED 24 11 26
USH2A WILD-TYPE 63 69 74
'USH2A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.146 (Fisher's exact test), Q value = 0.43

Table S5265.  Gene #479: 'USH2A MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
USH2A MUTATED 11 27 31
USH2A WILD-TYPE 78 133 107
'USH2A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.737 (Fisher's exact test), Q value = 1

Table S5266.  Gene #479: 'USH2A MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
USH2A MUTATED 35 21 13
USH2A WILD-TYPE 147 112 59
'USH2A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00806 (Fisher's exact test), Q value = 0.084

Table S5267.  Gene #479: 'USH2A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
USH2A MUTATED 17 28 19 24
USH2A WILD-TYPE 95 68 73 162

Figure S1630.  Get High-res Image Gene #479: 'USH2A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'USH2A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00016 (Fisher's exact test), Q value = 0.0072

Table S5268.  Gene #479: 'USH2A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
USH2A MUTATED 15 12 15 11 8 8 19
USH2A WILD-TYPE 45 38 34 29 55 117 80

Figure S1631.  Get High-res Image Gene #479: 'USH2A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'USH2A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0344 (Fisher's exact test), Q value = 0.19

Table S5269.  Gene #479: 'USH2A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
USH2A MUTATED 33 15 11 25
USH2A WILD-TYPE 97 63 57 171

Figure S1632.  Get High-res Image Gene #479: 'USH2A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'USH2A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0246 (Fisher's exact test), Q value = 0.16

Table S5270.  Gene #479: 'USH2A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
USH2A MUTATED 10 13 8 10 17 7 11 2 6
USH2A WILD-TYPE 30 49 20 70 52 41 32 26 68

Figure S1633.  Get High-res Image Gene #479: 'USH2A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'USH2A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.904 (Fisher's exact test), Q value = 1

Table S5271.  Gene #479: 'USH2A MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
USH2A MUTATED 9 6 6 5
USH2A WILD-TYPE 24 25 21 14
'USH2A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.353 (Fisher's exact test), Q value = 0.68

Table S5272.  Gene #479: 'USH2A MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
USH2A MUTATED 17 1 4 4
USH2A WILD-TYPE 37 9 20 18
'MYEOV MUTATION STATUS' versus 'CN_CNMF'

P value = 0.328 (Fisher's exact test), Q value = 0.66

Table S5273.  Gene #480: 'MYEOV MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
MYEOV MUTATED 5 1 1 0
MYEOV WILD-TYPE 173 182 100 20
'MYEOV MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.384 (Fisher's exact test), Q value = 0.71

Table S5274.  Gene #480: 'MYEOV MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
MYEOV MUTATED 1 1 4
MYEOV WILD-TYPE 86 79 96
'MYEOV MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.434 (Fisher's exact test), Q value = 0.76

Table S5275.  Gene #480: 'MYEOV MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
MYEOV MUTATED 0 4 3
MYEOV WILD-TYPE 89 156 135
'MYEOV MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.309 (Fisher's exact test), Q value = 0.64

Table S5276.  Gene #480: 'MYEOV MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
MYEOV MUTATED 3 4 0
MYEOV WILD-TYPE 179 129 72
'MYEOV MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.229 (Fisher's exact test), Q value = 0.55

Table S5277.  Gene #480: 'MYEOV MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
MYEOV MUTATED 1 3 2 1
MYEOV WILD-TYPE 111 93 90 185
'MYEOV MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0116 (Fisher's exact test), Q value = 0.1

Table S5278.  Gene #480: 'MYEOV MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
MYEOV MUTATED 1 0 4 0 1 0 1
MYEOV WILD-TYPE 59 50 45 40 62 125 98

Figure S1634.  Get High-res Image Gene #480: 'MYEOV MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'MYEOV MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0392 (Fisher's exact test), Q value = 0.21

Table S5279.  Gene #480: 'MYEOV MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
MYEOV MUTATED 5 0 0 1
MYEOV WILD-TYPE 125 78 68 195

Figure S1635.  Get High-res Image Gene #480: 'MYEOV MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'MYEOV MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.307 (Fisher's exact test), Q value = 0.64

Table S5280.  Gene #480: 'MYEOV MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
MYEOV MUTATED 1 1 0 0 3 1 0 0 0
MYEOV WILD-TYPE 39 61 28 80 66 47 43 28 74
'BRE MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.275 (Fisher's exact test), Q value = 0.6

Table S5281.  Gene #481: 'BRE MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
BRE MUTATED 2 0 1 0
BRE WILD-TYPE 44 58 63 43
'BRE MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.183 (Fisher's exact test), Q value = 0.48

Table S5282.  Gene #481: 'BRE MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
BRE MUTATED 2 0 1
BRE WILD-TYPE 49 83 76
'BRE MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0857 (Fisher's exact test), Q value = 0.32

Table S5283.  Gene #481: 'BRE MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
BRE MUTATED 8 3 0 0
BRE WILD-TYPE 170 180 101 20
'BRE MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0561 (Fisher's exact test), Q value = 0.26

Table S5284.  Gene #481: 'BRE MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
BRE MUTATED 1 1 7
BRE WILD-TYPE 86 79 93
'BRE MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.327 (Fisher's exact test), Q value = 0.66

Table S5285.  Gene #481: 'BRE MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
BRE MUTATED 1 7 3
BRE WILD-TYPE 88 153 135
'BRE MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.782 (Fisher's exact test), Q value = 1

Table S5286.  Gene #481: 'BRE MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
BRE MUTATED 5 5 1
BRE WILD-TYPE 177 128 71
'BRE MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0944 (Fisher's exact test), Q value = 0.34

Table S5287.  Gene #481: 'BRE MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
BRE MUTATED 1 6 1 4
BRE WILD-TYPE 111 90 91 182
'BRE MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.328 (Fisher's exact test), Q value = 0.66

Table S5288.  Gene #481: 'BRE MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
BRE MUTATED 2 2 3 0 0 2 3
BRE WILD-TYPE 58 48 46 40 63 123 96
'BRE MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.106 (Fisher's exact test), Q value = 0.36

Table S5289.  Gene #481: 'BRE MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
BRE MUTATED 6 0 0 6
BRE WILD-TYPE 124 78 68 190
'BRE MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.091 (Fisher's exact test), Q value = 0.33

Table S5290.  Gene #481: 'BRE MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
BRE MUTATED 1 0 2 2 5 1 1 0 0
BRE WILD-TYPE 39 62 26 78 64 47 42 28 74
'BRE MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.258 (Fisher's exact test), Q value = 0.58

Table S5291.  Gene #481: 'BRE MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
BRE MUTATED 2 0 0 1
BRE WILD-TYPE 31 31 27 18
'BRE MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.695 (Fisher's exact test), Q value = 0.97

Table S5292.  Gene #481: 'BRE MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
BRE MUTATED 1 0 1 1
BRE WILD-TYPE 53 10 23 21
'SCN3A MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00055 (Fisher's exact test), Q value = 0.016

Table S5293.  Gene #482: 'SCN3A MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
SCN3A MUTATED 7 1 0 5
SCN3A WILD-TYPE 39 57 64 38

Figure S1636.  Get High-res Image Gene #482: 'SCN3A MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'SCN3A MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00083 (Fisher's exact test), Q value = 0.022

Table S5294.  Gene #482: 'SCN3A MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
SCN3A MUTATED 9 3 1
SCN3A WILD-TYPE 42 80 76

Figure S1637.  Get High-res Image Gene #482: 'SCN3A MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'SCN3A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00089 (Fisher's exact test), Q value = 0.023

Table S5295.  Gene #482: 'SCN3A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
SCN3A MUTATED 31 10 8 0
SCN3A WILD-TYPE 147 173 93 20

Figure S1638.  Get High-res Image Gene #482: 'SCN3A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'SCN3A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.75 (Fisher's exact test), Q value = 1

Table S5296.  Gene #482: 'SCN3A MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
SCN3A MUTATED 12 9 15
SCN3A WILD-TYPE 75 71 85
'SCN3A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.558 (Fisher's exact test), Q value = 0.87

Table S5297.  Gene #482: 'SCN3A MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
SCN3A MUTATED 7 19 17
SCN3A WILD-TYPE 82 141 121
'SCN3A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.287 (Fisher's exact test), Q value = 0.62

Table S5298.  Gene #482: 'SCN3A MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
SCN3A MUTATED 19 19 5
SCN3A WILD-TYPE 163 114 67
'SCN3A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.15 (Fisher's exact test), Q value = 0.43

Table S5299.  Gene #482: 'SCN3A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
SCN3A MUTATED 13 15 7 14
SCN3A WILD-TYPE 99 81 85 172
'SCN3A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0204 (Fisher's exact test), Q value = 0.14

Table S5300.  Gene #482: 'SCN3A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
SCN3A MUTATED 7 7 7 5 8 3 12
SCN3A WILD-TYPE 53 43 42 35 55 122 87

Figure S1639.  Get High-res Image Gene #482: 'SCN3A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'SCN3A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.196 (Fisher's exact test), Q value = 0.5

Table S5301.  Gene #482: 'SCN3A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
SCN3A MUTATED 18 10 6 14
SCN3A WILD-TYPE 112 68 62 182
'SCN3A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.113 (Fisher's exact test), Q value = 0.37

Table S5302.  Gene #482: 'SCN3A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
SCN3A MUTATED 8 9 2 8 10 1 4 2 4
SCN3A WILD-TYPE 32 53 26 72 59 47 39 26 70
'SCN3A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S5303.  Gene #482: 'SCN3A MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
SCN3A MUTATED 4 3 3 2
SCN3A WILD-TYPE 29 28 24 17
'SCN3A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.467 (Fisher's exact test), Q value = 0.79

Table S5304.  Gene #482: 'SCN3A MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
SCN3A MUTATED 6 1 1 4
SCN3A WILD-TYPE 48 9 23 18
'FKTN MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0725 (Fisher's exact test), Q value = 0.29

Table S5305.  Gene #483: 'FKTN MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
FKTN MUTATED 2 0 0 2
FKTN WILD-TYPE 44 58 64 41
'FKTN MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.554 (Fisher's exact test), Q value = 0.87

Table S5306.  Gene #483: 'FKTN MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
FKTN MUTATED 2 1 1
FKTN WILD-TYPE 49 82 76
'FKTN MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0182 (Fisher's exact test), Q value = 0.13

Table S5307.  Gene #483: 'FKTN MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
FKTN MUTATED 7 1 0 1
FKTN WILD-TYPE 171 182 101 19

Figure S1640.  Get High-res Image Gene #483: 'FKTN MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'FKTN MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.63 (Fisher's exact test), Q value = 0.93

Table S5308.  Gene #483: 'FKTN MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
FKTN MUTATED 1 1 3
FKTN WILD-TYPE 86 79 97
'FKTN MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.26 (Fisher's exact test), Q value = 0.58

Table S5309.  Gene #483: 'FKTN MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
FKTN MUTATED 0 5 4
FKTN WILD-TYPE 89 155 134
'FKTN MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.67 (Fisher's exact test), Q value = 0.95

Table S5310.  Gene #483: 'FKTN MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
FKTN MUTATED 3 4 2
FKTN WILD-TYPE 179 129 70
'FKTN MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.167 (Fisher's exact test), Q value = 0.46

Table S5311.  Gene #483: 'FKTN MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
FKTN MUTATED 1 4 0 4
FKTN WILD-TYPE 111 92 92 182
'FKTN MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0808 (Fisher's exact test), Q value = 0.31

Table S5312.  Gene #483: 'FKTN MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
FKTN MUTATED 2 2 2 0 0 0 3
FKTN WILD-TYPE 58 48 47 40 63 125 96
'FKTN MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.283 (Fisher's exact test), Q value = 0.61

Table S5313.  Gene #483: 'FKTN MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
FKTN MUTATED 4 0 0 5
FKTN WILD-TYPE 126 78 68 191
'FKTN MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.195 (Fisher's exact test), Q value = 0.5

Table S5314.  Gene #483: 'FKTN MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
FKTN MUTATED 0 0 1 1 4 0 2 0 1
FKTN WILD-TYPE 40 62 27 79 65 48 41 28 73
'MIER1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.549 (Fisher's exact test), Q value = 0.87

Table S5315.  Gene #484: 'MIER1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
MIER1 MUTATED 4 3 0 0
MIER1 WILD-TYPE 174 180 101 20
'MIER1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.382 (Fisher's exact test), Q value = 0.71

Table S5316.  Gene #484: 'MIER1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
MIER1 MUTATED 1 1 4
MIER1 WILD-TYPE 86 79 96
'MIER1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.818 (Fisher's exact test), Q value = 1

Table S5317.  Gene #484: 'MIER1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
MIER1 MUTATED 2 4 2
MIER1 WILD-TYPE 87 156 136
'MIER1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.158 (Fisher's exact test), Q value = 0.45

Table S5318.  Gene #484: 'MIER1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
MIER1 MUTATED 3 5 0
MIER1 WILD-TYPE 179 128 72
'MIER1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.443 (Fisher's exact test), Q value = 0.77

Table S5319.  Gene #484: 'MIER1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
MIER1 MUTATED 4 1 1 2
MIER1 WILD-TYPE 108 95 91 184
'MIER1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.115 (Fisher's exact test), Q value = 0.38

Table S5320.  Gene #484: 'MIER1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
MIER1 MUTATED 3 1 1 0 2 0 1
MIER1 WILD-TYPE 57 49 48 40 61 125 98
'MIER1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.955 (Fisher's exact test), Q value = 1

Table S5321.  Gene #484: 'MIER1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
MIER1 MUTATED 3 1 1 3
MIER1 WILD-TYPE 127 77 67 193
'MIER1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.33 (Fisher's exact test), Q value = 0.66

Table S5322.  Gene #484: 'MIER1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
MIER1 MUTATED 0 1 2 2 2 0 1 0 0
MIER1 WILD-TYPE 40 61 26 78 67 48 42 28 74
'KIRREL2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.817 (Fisher's exact test), Q value = 1

Table S5323.  Gene #485: 'KIRREL2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
KIRREL2 MUTATED 1 1 1 2
KIRREL2 WILD-TYPE 45 57 63 41
'KIRREL2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.738 (Fisher's exact test), Q value = 1

Table S5324.  Gene #485: 'KIRREL2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
KIRREL2 MUTATED 2 2 1
KIRREL2 WILD-TYPE 49 81 76
'KIRREL2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0069 (Fisher's exact test), Q value = 0.076

Table S5325.  Gene #485: 'KIRREL2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
KIRREL2 MUTATED 12 3 0 0
KIRREL2 WILD-TYPE 166 180 101 20

Figure S1641.  Get High-res Image Gene #485: 'KIRREL2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'KIRREL2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.4 (Fisher's exact test), Q value = 0.72

Table S5326.  Gene #485: 'KIRREL2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
KIRREL2 MUTATED 2 2 6
KIRREL2 WILD-TYPE 85 78 94
'KIRREL2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.303 (Fisher's exact test), Q value = 0.63

Table S5327.  Gene #485: 'KIRREL2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
KIRREL2 MUTATED 2 4 8
KIRREL2 WILD-TYPE 87 156 130
'KIRREL2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.456 (Fisher's exact test), Q value = 0.78

Table S5328.  Gene #485: 'KIRREL2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
KIRREL2 MUTATED 9 3 2
KIRREL2 WILD-TYPE 173 130 70
'KIRREL2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.246 (Fisher's exact test), Q value = 0.57

Table S5329.  Gene #485: 'KIRREL2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
KIRREL2 MUTATED 1 5 4 5
KIRREL2 WILD-TYPE 111 91 88 181
'KIRREL2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00057 (Fisher's exact test), Q value = 0.017

Table S5330.  Gene #485: 'KIRREL2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
KIRREL2 MUTATED 1 0 8 0 1 2 3
KIRREL2 WILD-TYPE 59 50 41 40 62 123 96

Figure S1642.  Get High-res Image Gene #485: 'KIRREL2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'KIRREL2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.206 (Fisher's exact test), Q value = 0.51

Table S5331.  Gene #485: 'KIRREL2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
KIRREL2 MUTATED 8 1 1 5
KIRREL2 WILD-TYPE 122 77 67 191
'KIRREL2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0283 (Fisher's exact test), Q value = 0.17

Table S5332.  Gene #485: 'KIRREL2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
KIRREL2 MUTATED 1 3 1 0 7 2 0 0 1
KIRREL2 WILD-TYPE 39 59 27 80 62 46 43 28 73

Figure S1643.  Get High-res Image Gene #485: 'KIRREL2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'KIRREL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.697 (Fisher's exact test), Q value = 0.97

Table S5333.  Gene #485: 'KIRREL2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
KIRREL2 MUTATED 2 1 0 1
KIRREL2 WILD-TYPE 31 30 27 18
'KIRREL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.767 (Fisher's exact test), Q value = 1

Table S5334.  Gene #485: 'KIRREL2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
KIRREL2 MUTATED 3 0 0 1
KIRREL2 WILD-TYPE 51 10 24 21
'PAK3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.221 (Fisher's exact test), Q value = 0.54

Table S5335.  Gene #486: 'PAK3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
PAK3 MUTATED 2 1 0 2
PAK3 WILD-TYPE 44 57 64 41
'PAK3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.639 (Fisher's exact test), Q value = 0.93

Table S5336.  Gene #486: 'PAK3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
PAK3 MUTATED 2 1 2
PAK3 WILD-TYPE 49 82 75
'PAK3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.168 (Fisher's exact test), Q value = 0.46

Table S5337.  Gene #486: 'PAK3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
PAK3 MUTATED 12 4 4 0
PAK3 WILD-TYPE 166 179 97 20
'PAK3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.105 (Fisher's exact test), Q value = 0.36

Table S5338.  Gene #486: 'PAK3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
PAK3 MUTATED 6 1 8
PAK3 WILD-TYPE 81 79 92
'PAK3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.253 (Fisher's exact test), Q value = 0.58

Table S5339.  Gene #486: 'PAK3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
PAK3 MUTATED 4 4 9
PAK3 WILD-TYPE 85 156 129
'PAK3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.945 (Fisher's exact test), Q value = 1

Table S5340.  Gene #486: 'PAK3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
PAK3 MUTATED 9 5 3
PAK3 WILD-TYPE 173 128 69
'PAK3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0992 (Fisher's exact test), Q value = 0.35

Table S5341.  Gene #486: 'PAK3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
PAK3 MUTATED 2 7 6 5
PAK3 WILD-TYPE 110 89 86 181
'PAK3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0171 (Fisher's exact test), Q value = 0.13

Table S5342.  Gene #486: 'PAK3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
PAK3 MUTATED 2 2 7 1 3 1 4
PAK3 WILD-TYPE 58 48 42 39 60 124 95

Figure S1644.  Get High-res Image Gene #486: 'PAK3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'PAK3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.212 (Fisher's exact test), Q value = 0.52

Table S5343.  Gene #486: 'PAK3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
PAK3 MUTATED 10 2 2 6
PAK3 WILD-TYPE 120 76 66 190
'PAK3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.103 (Fisher's exact test), Q value = 0.36

Table S5344.  Gene #486: 'PAK3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
PAK3 MUTATED 2 4 1 1 7 0 3 0 2
PAK3 WILD-TYPE 38 58 27 79 62 48 40 28 72
'PAK3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.394 (Fisher's exact test), Q value = 0.72

Table S5345.  Gene #486: 'PAK3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
PAK3 MUTATED 2 1 0 2
PAK3 WILD-TYPE 31 30 27 17
'PAK3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.635 (Fisher's exact test), Q value = 0.93

Table S5346.  Gene #486: 'PAK3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
PAK3 MUTATED 4 0 0 1
PAK3 WILD-TYPE 50 10 24 21
'RAF1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.404 (Fisher's exact test), Q value = 0.73

Table S5347.  Gene #487: 'RAF1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
RAF1 MUTATED 1 0 1 2
RAF1 WILD-TYPE 45 58 63 41
'RAF1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.556 (Fisher's exact test), Q value = 0.87

Table S5348.  Gene #487: 'RAF1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
RAF1 MUTATED 2 1 1
RAF1 WILD-TYPE 49 82 76
'RAF1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0238 (Fisher's exact test), Q value = 0.16

Table S5349.  Gene #487: 'RAF1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
RAF1 MUTATED 10 1 4 0
RAF1 WILD-TYPE 168 182 97 20

Figure S1645.  Get High-res Image Gene #487: 'RAF1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'RAF1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.309 (Fisher's exact test), Q value = 0.64

Table S5350.  Gene #487: 'RAF1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
RAF1 MUTATED 5 1 4
RAF1 WILD-TYPE 82 79 96
'RAF1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.478 (Fisher's exact test), Q value = 0.81

Table S5351.  Gene #487: 'RAF1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
RAF1 MUTATED 1 6 6
RAF1 WILD-TYPE 88 154 132
'RAF1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.569 (Fisher's exact test), Q value = 0.88

Table S5352.  Gene #487: 'RAF1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
RAF1 MUTATED 6 6 1
RAF1 WILD-TYPE 176 127 71
'RAF1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.56 (Fisher's exact test), Q value = 0.87

Table S5353.  Gene #487: 'RAF1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
RAF1 MUTATED 2 5 2 6
RAF1 WILD-TYPE 110 91 90 180
'RAF1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0487 (Fisher's exact test), Q value = 0.24

Table S5354.  Gene #487: 'RAF1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
RAF1 MUTATED 2 5 1 0 1 1 5
RAF1 WILD-TYPE 58 45 48 40 62 124 94

Figure S1646.  Get High-res Image Gene #487: 'RAF1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'RAF1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.731 (Fisher's exact test), Q value = 1

Table S5355.  Gene #487: 'RAF1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
RAF1 MUTATED 5 1 1 7
RAF1 WILD-TYPE 125 77 67 189
'RAF1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.944 (Fisher's exact test), Q value = 1

Table S5356.  Gene #487: 'RAF1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
RAF1 MUTATED 0 3 1 3 3 1 1 0 2
RAF1 WILD-TYPE 40 59 27 77 66 47 42 28 72
'ASNSD1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0315 (Fisher's exact test), Q value = 0.18

Table S5357.  Gene #488: 'ASNSD1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ASNSD1 MUTATED 3 0 0 1
ASNSD1 WILD-TYPE 43 58 64 42

Figure S1647.  Get High-res Image Gene #488: 'ASNSD1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'ASNSD1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0627 (Fisher's exact test), Q value = 0.27

Table S5358.  Gene #488: 'ASNSD1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ASNSD1 MUTATED 3 1 0
ASNSD1 WILD-TYPE 48 82 77
'ASNSD1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0125 (Fisher's exact test), Q value = 0.11

Table S5359.  Gene #488: 'ASNSD1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ASNSD1 MUTATED 8 1 0 1
ASNSD1 WILD-TYPE 170 182 101 19

Figure S1648.  Get High-res Image Gene #488: 'ASNSD1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ASNSD1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0282 (Fisher's exact test), Q value = 0.17

Table S5360.  Gene #488: 'ASNSD1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ASNSD1 MUTATED 5 0 1
ASNSD1 WILD-TYPE 82 80 99

Figure S1649.  Get High-res Image Gene #488: 'ASNSD1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'ASNSD1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.477 (Fisher's exact test), Q value = 0.81

Table S5361.  Gene #488: 'ASNSD1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ASNSD1 MUTATED 3 2 3
ASNSD1 WILD-TYPE 86 158 135
'ASNSD1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.221 (Fisher's exact test), Q value = 0.53

Table S5362.  Gene #488: 'ASNSD1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ASNSD1 MUTATED 2 3 3
ASNSD1 WILD-TYPE 180 130 69
'ASNSD1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0976 (Fisher's exact test), Q value = 0.34

Table S5363.  Gene #488: 'ASNSD1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ASNSD1 MUTATED 0 1 4 5
ASNSD1 WILD-TYPE 112 95 88 181
'ASNSD1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.332 (Fisher's exact test), Q value = 0.66

Table S5364.  Gene #488: 'ASNSD1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ASNSD1 MUTATED 0 1 2 0 2 1 4
ASNSD1 WILD-TYPE 60 49 47 40 61 124 95
'ASNSD1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.218 (Fisher's exact test), Q value = 0.53

Table S5365.  Gene #488: 'ASNSD1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ASNSD1 MUTATED 1 3 0 6
ASNSD1 WILD-TYPE 129 75 68 190
'ASNSD1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.768 (Fisher's exact test), Q value = 1

Table S5366.  Gene #488: 'ASNSD1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ASNSD1 MUTATED 1 2 0 3 3 0 0 0 1
ASNSD1 WILD-TYPE 39 60 28 77 66 48 43 28 73
'ABCC4 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.697 (Fisher's exact test), Q value = 0.97

Table S5367.  Gene #489: 'ABCC4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ABCC4 MUTATED 2 1 1 2
ABCC4 WILD-TYPE 44 57 63 41
'ABCC4 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.659 (Fisher's exact test), Q value = 0.95

Table S5368.  Gene #489: 'ABCC4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ABCC4 MUTATED 2 3 1
ABCC4 WILD-TYPE 49 80 76
'ABCC4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.026 (Fisher's exact test), Q value = 0.16

Table S5369.  Gene #489: 'ABCC4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ABCC4 MUTATED 14 3 3 0
ABCC4 WILD-TYPE 164 180 98 20

Figure S1650.  Get High-res Image Gene #489: 'ABCC4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ABCC4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.616 (Fisher's exact test), Q value = 0.91

Table S5370.  Gene #489: 'ABCC4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ABCC4 MUTATED 5 2 5
ABCC4 WILD-TYPE 82 78 95
'ABCC4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.35 (Fisher's exact test), Q value = 0.68

Table S5371.  Gene #489: 'ABCC4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ABCC4 MUTATED 3 5 9
ABCC4 WILD-TYPE 86 155 129
'ABCC4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.411 (Fisher's exact test), Q value = 0.74

Table S5372.  Gene #489: 'ABCC4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ABCC4 MUTATED 9 7 1
ABCC4 WILD-TYPE 173 126 71
'ABCC4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.834 (Fisher's exact test), Q value = 1

Table S5373.  Gene #489: 'ABCC4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ABCC4 MUTATED 5 5 4 6
ABCC4 WILD-TYPE 107 91 88 180
'ABCC4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.313 (Fisher's exact test), Q value = 0.64

Table S5374.  Gene #489: 'ABCC4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ABCC4 MUTATED 2 4 4 0 2 3 5
ABCC4 WILD-TYPE 58 46 45 40 61 122 94
'ABCC4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.758 (Fisher's exact test), Q value = 1

Table S5375.  Gene #489: 'ABCC4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ABCC4 MUTATED 6 3 1 9
ABCC4 WILD-TYPE 124 75 67 187
'ABCC4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.504 (Fisher's exact test), Q value = 0.83

Table S5376.  Gene #489: 'ABCC4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ABCC4 MUTATED 1 4 1 5 5 0 1 0 2
ABCC4 WILD-TYPE 39 58 27 75 64 48 42 28 72
'ABCC4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S5377.  Gene #489: 'ABCC4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
ABCC4 MUTATED 1 1 1 1
ABCC4 WILD-TYPE 32 30 26 18
'ABCC4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.87 (Fisher's exact test), Q value = 1

Table S5378.  Gene #489: 'ABCC4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
ABCC4 MUTATED 3 0 1 0
ABCC4 WILD-TYPE 51 10 23 22
'CYLC1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.112 (Fisher's exact test), Q value = 0.37

Table S5379.  Gene #490: 'CYLC1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
CYLC1 MUTATED 2 0 1 3
CYLC1 WILD-TYPE 44 58 63 40
'CYLC1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.58 (Fisher's exact test), Q value = 0.89

Table S5380.  Gene #490: 'CYLC1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
CYLC1 MUTATED 2 1 3
CYLC1 WILD-TYPE 49 82 74
'CYLC1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0588 (Fisher's exact test), Q value = 0.26

Table S5381.  Gene #490: 'CYLC1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
CYLC1 MUTATED 20 10 4 0
CYLC1 WILD-TYPE 158 173 97 20
'CYLC1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.21 (Fisher's exact test), Q value = 0.52

Table S5382.  Gene #490: 'CYLC1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
CYLC1 MUTATED 7 6 15
CYLC1 WILD-TYPE 80 74 85
'CYLC1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.187 (Fisher's exact test), Q value = 0.49

Table S5383.  Gene #490: 'CYLC1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
CYLC1 MUTATED 3 14 13
CYLC1 WILD-TYPE 86 146 125
'CYLC1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.486 (Fisher's exact test), Q value = 0.81

Table S5384.  Gene #490: 'CYLC1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
CYLC1 MUTATED 15 12 3
CYLC1 WILD-TYPE 167 121 69
'CYLC1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00279 (Fisher's exact test), Q value = 0.047

Table S5385.  Gene #490: 'CYLC1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
CYLC1 MUTATED 7 9 13 5
CYLC1 WILD-TYPE 105 87 79 181

Figure S1651.  Get High-res Image Gene #490: 'CYLC1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'CYLC1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 4e-05 (Fisher's exact test), Q value = 0.0027

Table S5386.  Gene #490: 'CYLC1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
CYLC1 MUTATED 6 3 10 5 5 0 5
CYLC1 WILD-TYPE 54 47 39 35 58 125 94

Figure S1652.  Get High-res Image Gene #490: 'CYLC1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CYLC1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.286 (Fisher's exact test), Q value = 0.62

Table S5387.  Gene #490: 'CYLC1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
CYLC1 MUTATED 14 5 5 10
CYLC1 WILD-TYPE 116 73 63 186
'CYLC1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.121 (Fisher's exact test), Q value = 0.39

Table S5388.  Gene #490: 'CYLC1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
CYLC1 MUTATED 2 5 3 3 8 4 6 2 1
CYLC1 WILD-TYPE 38 57 25 77 61 44 37 26 73
'CYLC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.309 (Fisher's exact test), Q value = 0.64

Table S5389.  Gene #490: 'CYLC1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
CYLC1 MUTATED 4 3 2 5
CYLC1 WILD-TYPE 29 28 25 14
'CYLC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.677 (Fisher's exact test), Q value = 0.96

Table S5390.  Gene #490: 'CYLC1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
CYLC1 MUTATED 8 0 4 2
CYLC1 WILD-TYPE 46 10 20 20
'RNF111 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.005 (Fisher's exact test), Q value = 0.064

Table S5391.  Gene #491: 'RNF111 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
RNF111 MUTATED 4 0 0 3
RNF111 WILD-TYPE 42 58 64 40

Figure S1653.  Get High-res Image Gene #491: 'RNF111 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'RNF111 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00447 (Fisher's exact test), Q value = 0.061

Table S5392.  Gene #491: 'RNF111 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
RNF111 MUTATED 5 0 2
RNF111 WILD-TYPE 46 83 75

Figure S1654.  Get High-res Image Gene #491: 'RNF111 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'RNF111 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0538 (Fisher's exact test), Q value = 0.25

Table S5393.  Gene #491: 'RNF111 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
RNF111 MUTATED 11 3 1 0
RNF111 WILD-TYPE 167 180 100 20
'RNF111 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.919 (Fisher's exact test), Q value = 1

Table S5394.  Gene #491: 'RNF111 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
RNF111 MUTATED 4 3 3
RNF111 WILD-TYPE 83 77 97
'RNF111 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.111 (Fisher's exact test), Q value = 0.37

Table S5395.  Gene #491: 'RNF111 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
RNF111 MUTATED 1 5 9
RNF111 WILD-TYPE 88 155 129
'RNF111 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.83 (Fisher's exact test), Q value = 1

Table S5396.  Gene #491: 'RNF111 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
RNF111 MUTATED 6 6 3
RNF111 WILD-TYPE 176 127 69
'RNF111 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.984 (Fisher's exact test), Q value = 1

Table S5397.  Gene #491: 'RNF111 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
RNF111 MUTATED 3 3 3 7
RNF111 WILD-TYPE 109 93 89 179
'RNF111 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0109 (Fisher's exact test), Q value = 0.1

Table S5398.  Gene #491: 'RNF111 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
RNF111 MUTATED 2 4 3 0 1 0 6
RNF111 WILD-TYPE 58 46 46 40 62 125 93

Figure S1655.  Get High-res Image Gene #491: 'RNF111 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'RNF111 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.713 (Fisher's exact test), Q value = 0.98

Table S5399.  Gene #491: 'RNF111 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
RNF111 MUTATED 3 3 1 8
RNF111 WILD-TYPE 127 75 67 188
'RNF111 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.508 (Fisher's exact test), Q value = 0.83

Table S5400.  Gene #491: 'RNF111 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
RNF111 MUTATED 1 4 2 3 3 0 1 0 1
RNF111 WILD-TYPE 39 58 26 77 66 48 42 28 73
'CLIP4 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0267 (Fisher's exact test), Q value = 0.17

Table S5401.  Gene #492: 'CLIP4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
CLIP4 MUTATED 3 0 0 2
CLIP4 WILD-TYPE 43 58 64 41

Figure S1656.  Get High-res Image Gene #492: 'CLIP4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'CLIP4 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.019 (Fisher's exact test), Q value = 0.14

Table S5402.  Gene #492: 'CLIP4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
CLIP4 MUTATED 4 1 0
CLIP4 WILD-TYPE 47 82 77

Figure S1657.  Get High-res Image Gene #492: 'CLIP4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'CLIP4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.163 (Fisher's exact test), Q value = 0.46

Table S5403.  Gene #492: 'CLIP4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
CLIP4 MUTATED 9 3 1 0
CLIP4 WILD-TYPE 169 180 100 20
'CLIP4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.126 (Fisher's exact test), Q value = 0.39

Table S5404.  Gene #492: 'CLIP4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
CLIP4 MUTATED 2 0 5
CLIP4 WILD-TYPE 85 80 95
'CLIP4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.716 (Fisher's exact test), Q value = 0.99

Table S5405.  Gene #492: 'CLIP4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
CLIP4 MUTATED 1 5 4
CLIP4 WILD-TYPE 88 155 134
'CLIP4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.36 (Fisher's exact test), Q value = 0.69

Table S5406.  Gene #492: 'CLIP4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
CLIP4 MUTATED 6 4 0
CLIP4 WILD-TYPE 176 129 72
'CLIP4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0723 (Fisher's exact test), Q value = 0.29

Table S5407.  Gene #492: 'CLIP4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
CLIP4 MUTATED 0 5 2 7
CLIP4 WILD-TYPE 112 91 90 179
'CLIP4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.13 (Fisher's exact test), Q value = 0.4

Table S5408.  Gene #492: 'CLIP4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
CLIP4 MUTATED 1 3 2 0 0 2 6
CLIP4 WILD-TYPE 59 47 47 40 63 123 93
'CLIP4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.793 (Fisher's exact test), Q value = 1

Table S5409.  Gene #492: 'CLIP4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
CLIP4 MUTATED 4 1 1 7
CLIP4 WILD-TYPE 126 77 67 189
'CLIP4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.279 (Fisher's exact test), Q value = 0.61

Table S5410.  Gene #492: 'CLIP4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
CLIP4 MUTATED 1 0 0 3 5 0 2 0 2
CLIP4 WILD-TYPE 39 62 28 77 64 48 41 28 72
'CLIP4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.255 (Fisher's exact test), Q value = 0.58

Table S5411.  Gene #492: 'CLIP4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
CLIP4 MUTATED 2 0 0 1
CLIP4 WILD-TYPE 31 31 27 18
'CLIP4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S5412.  Gene #492: 'CLIP4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
CLIP4 MUTATED 2 0 1 0
CLIP4 WILD-TYPE 52 10 23 22
'SULT6B1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0649 (Fisher's exact test), Q value = 0.28

Table S5413.  Gene #493: 'SULT6B1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
SULT6B1 MUTATED 1 0 0 2
SULT6B1 WILD-TYPE 45 58 64 41
'SULT6B1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.788 (Fisher's exact test), Q value = 1

Table S5414.  Gene #493: 'SULT6B1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
SULT6B1 MUTATED 0 2 1
SULT6B1 WILD-TYPE 51 81 76
'SULT6B1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0757 (Fisher's exact test), Q value = 0.3

Table S5415.  Gene #493: 'SULT6B1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
SULT6B1 MUTATED 6 2 2 2
SULT6B1 WILD-TYPE 172 181 99 18
'SULT6B1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.104 (Fisher's exact test), Q value = 0.36

Table S5416.  Gene #493: 'SULT6B1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
SULT6B1 MUTATED 6 2 1
SULT6B1 WILD-TYPE 81 78 99
'SULT6B1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.858 (Fisher's exact test), Q value = 1

Table S5417.  Gene #493: 'SULT6B1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
SULT6B1 MUTATED 3 5 3
SULT6B1 WILD-TYPE 86 155 135
'SULT6B1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.428 (Fisher's exact test), Q value = 0.76

Table S5418.  Gene #493: 'SULT6B1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
SULT6B1 MUTATED 4 6 1
SULT6B1 WILD-TYPE 178 127 71
'SULT6B1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.976 (Fisher's exact test), Q value = 1

Table S5419.  Gene #493: 'SULT6B1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
SULT6B1 MUTATED 3 3 2 4
SULT6B1 WILD-TYPE 109 93 90 182
'SULT6B1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.389 (Fisher's exact test), Q value = 0.72

Table S5420.  Gene #493: 'SULT6B1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
SULT6B1 MUTATED 3 1 2 2 1 1 2
SULT6B1 WILD-TYPE 57 49 47 38 62 124 97
'SULT6B1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.95 (Fisher's exact test), Q value = 1

Table S5421.  Gene #493: 'SULT6B1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
SULT6B1 MUTATED 4 2 1 5
SULT6B1 WILD-TYPE 126 76 67 191
'SULT6B1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.745 (Fisher's exact test), Q value = 1

Table S5422.  Gene #493: 'SULT6B1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
SULT6B1 MUTATED 2 1 2 2 2 1 0 0 2
SULT6B1 WILD-TYPE 38 61 26 78 67 47 43 28 72
'PLA2G4E MUTATION STATUS' versus 'CN_CNMF'

P value = 0.167 (Fisher's exact test), Q value = 0.46

Table S5423.  Gene #494: 'PLA2G4E MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
PLA2G4E MUTATED 8 2 1 0
PLA2G4E WILD-TYPE 170 181 100 20
'PLA2G4E MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.403 (Fisher's exact test), Q value = 0.73

Table S5424.  Gene #494: 'PLA2G4E MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
PLA2G4E MUTATED 2 2 6
PLA2G4E WILD-TYPE 85 78 94
'PLA2G4E MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.605 (Fisher's exact test), Q value = 0.91

Table S5425.  Gene #494: 'PLA2G4E MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
PLA2G4E MUTATED 1 4 5
PLA2G4E WILD-TYPE 88 156 133
'PLA2G4E MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.84 (Fisher's exact test), Q value = 1

Table S5426.  Gene #494: 'PLA2G4E MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
PLA2G4E MUTATED 4 4 2
PLA2G4E WILD-TYPE 178 129 70
'PLA2G4E MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0523 (Fisher's exact test), Q value = 0.25

Table S5427.  Gene #494: 'PLA2G4E MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
PLA2G4E MUTATED 2 5 3 1
PLA2G4E WILD-TYPE 110 91 89 185
'PLA2G4E MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00069 (Fisher's exact test), Q value = 0.019

Table S5428.  Gene #494: 'PLA2G4E MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
PLA2G4E MUTATED 1 4 4 1 1 0 0
PLA2G4E WILD-TYPE 59 46 45 39 62 125 99

Figure S1658.  Get High-res Image Gene #494: 'PLA2G4E MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'PLA2G4E MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0847 (Fisher's exact test), Q value = 0.31

Table S5429.  Gene #494: 'PLA2G4E MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
PLA2G4E MUTATED 7 1 0 3
PLA2G4E WILD-TYPE 123 77 68 193
'PLA2G4E MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.269 (Fisher's exact test), Q value = 0.59

Table S5430.  Gene #494: 'PLA2G4E MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
PLA2G4E MUTATED 2 3 1 2 3 0 0 0 0
PLA2G4E WILD-TYPE 38 59 27 78 66 48 43 28 74
'CLCNKA MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0595 (Fisher's exact test), Q value = 0.27

Table S5431.  Gene #495: 'CLCNKA MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
CLCNKA MUTATED 7 1 1 1
CLCNKA WILD-TYPE 171 182 100 19
'CLCNKA MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.242 (Fisher's exact test), Q value = 0.57

Table S5432.  Gene #495: 'CLCNKA MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
CLCNKA MUTATED 2 1 6
CLCNKA WILD-TYPE 85 79 94
'CLCNKA MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.903 (Fisher's exact test), Q value = 1

Table S5433.  Gene #495: 'CLCNKA MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
CLCNKA MUTATED 1 4 3
CLCNKA WILD-TYPE 88 156 135
'CLCNKA MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.64 (Fisher's exact test), Q value = 0.93

Table S5434.  Gene #495: 'CLCNKA MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
CLCNKA MUTATED 3 4 1
CLCNKA WILD-TYPE 179 129 71
'CLCNKA MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0185 (Fisher's exact test), Q value = 0.14

Table S5435.  Gene #495: 'CLCNKA MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
CLCNKA MUTATED 2 6 1 1
CLCNKA WILD-TYPE 110 90 91 185

Figure S1659.  Get High-res Image Gene #495: 'CLCNKA MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'CLCNKA MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00018 (Fisher's exact test), Q value = 0.0078

Table S5436.  Gene #495: 'CLCNKA MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
CLCNKA MUTATED 2 1 6 0 0 0 1
CLCNKA WILD-TYPE 58 49 43 40 63 125 98

Figure S1660.  Get High-res Image Gene #495: 'CLCNKA MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CLCNKA MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.172 (Fisher's exact test), Q value = 0.47

Table S5437.  Gene #495: 'CLCNKA MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
CLCNKA MUTATED 6 1 1 2
CLCNKA WILD-TYPE 124 77 67 194
'CLCNKA MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.114 (Fisher's exact test), Q value = 0.37

Table S5438.  Gene #495: 'CLCNKA MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
CLCNKA MUTATED 1 1 0 0 3 1 3 1 0
CLCNKA WILD-TYPE 39 61 28 80 66 47 40 27 74
'CLCNKA MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0606 (Fisher's exact test), Q value = 0.27

Table S5439.  Gene #495: 'CLCNKA MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
CLCNKA MUTATED 0 0 1 2
CLCNKA WILD-TYPE 33 31 26 17
'CLCNKA MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.697 (Fisher's exact test), Q value = 0.97

Table S5440.  Gene #495: 'CLCNKA MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
CLCNKA MUTATED 1 0 1 1
CLCNKA WILD-TYPE 53 10 23 21
'ERCC6 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0474 (Fisher's exact test), Q value = 0.23

Table S5441.  Gene #496: 'ERCC6 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ERCC6 MUTATED 3 2 0 4
ERCC6 WILD-TYPE 43 56 64 39

Figure S1661.  Get High-res Image Gene #496: 'ERCC6 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'ERCC6 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0966 (Fisher's exact test), Q value = 0.34

Table S5442.  Gene #496: 'ERCC6 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ERCC6 MUTATED 5 2 2
ERCC6 WILD-TYPE 46 81 75
'ERCC6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00311 (Fisher's exact test), Q value = 0.05

Table S5443.  Gene #496: 'ERCC6 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ERCC6 MUTATED 22 9 2 0
ERCC6 WILD-TYPE 156 174 99 20

Figure S1662.  Get High-res Image Gene #496: 'ERCC6 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ERCC6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.389 (Fisher's exact test), Q value = 0.72

Table S5444.  Gene #496: 'ERCC6 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ERCC6 MUTATED 9 4 10
ERCC6 WILD-TYPE 78 76 90
'ERCC6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.315 (Fisher's exact test), Q value = 0.64

Table S5445.  Gene #496: 'ERCC6 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ERCC6 MUTATED 3 13 11
ERCC6 WILD-TYPE 86 147 127
'ERCC6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.316 (Fisher's exact test), Q value = 0.64

Table S5446.  Gene #496: 'ERCC6 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ERCC6 MUTATED 15 10 2
ERCC6 WILD-TYPE 167 123 70
'ERCC6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.263 (Fisher's exact test), Q value = 0.59

Table S5447.  Gene #496: 'ERCC6 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ERCC6 MUTATED 6 11 6 10
ERCC6 WILD-TYPE 106 85 86 176
'ERCC6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00098 (Fisher's exact test), Q value = 0.024

Table S5448.  Gene #496: 'ERCC6 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ERCC6 MUTATED 5 4 9 3 2 1 9
ERCC6 WILD-TYPE 55 46 40 37 61 124 90

Figure S1663.  Get High-res Image Gene #496: 'ERCC6 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ERCC6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.508 (Fisher's exact test), Q value = 0.83

Table S5449.  Gene #496: 'ERCC6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ERCC6 MUTATED 12 6 3 11
ERCC6 WILD-TYPE 118 72 65 185
'ERCC6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0323 (Fisher's exact test), Q value = 0.18

Table S5450.  Gene #496: 'ERCC6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ERCC6 MUTATED 4 4 1 4 11 1 5 0 2
ERCC6 WILD-TYPE 36 58 27 76 58 47 38 28 72

Figure S1664.  Get High-res Image Gene #496: 'ERCC6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'ERCC6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.942 (Fisher's exact test), Q value = 1

Table S5451.  Gene #496: 'ERCC6 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
ERCC6 MUTATED 2 1 2 1
ERCC6 WILD-TYPE 31 30 25 18
'ERCC6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.195 (Fisher's exact test), Q value = 0.5

Table S5452.  Gene #496: 'ERCC6 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
ERCC6 MUTATED 2 1 3 0
ERCC6 WILD-TYPE 52 9 21 22
'ALG2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00786 (Fisher's exact test), Q value = 0.083

Table S5453.  Gene #497: 'ALG2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ALG2 MUTATED 0 0 0 3
ALG2 WILD-TYPE 46 58 64 40

Figure S1665.  Get High-res Image Gene #497: 'ALG2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'ALG2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.252 (Fisher's exact test), Q value = 0.58

Table S5454.  Gene #497: 'ALG2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ALG2 MUTATED 2 1 0
ALG2 WILD-TYPE 49 82 77
'ALG2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0759 (Fisher's exact test), Q value = 0.3

Table S5455.  Gene #497: 'ALG2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ALG2 MUTATED 5 0 3 0
ALG2 WILD-TYPE 173 183 98 20
'ALG2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S5456.  Gene #497: 'ALG2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ALG2 MUTATED 2 1 2
ALG2 WILD-TYPE 85 79 98
'ALG2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.508 (Fisher's exact test), Q value = 0.83

Table S5457.  Gene #497: 'ALG2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ALG2 MUTATED 0 3 3
ALG2 WILD-TYPE 89 157 135
'ALG2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S5458.  Gene #497: 'ALG2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ALG2 MUTATED 3 2 1
ALG2 WILD-TYPE 179 131 71
'ALG2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S5459.  Gene #497: 'ALG2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ALG2 MUTATED 2 2 1 3
ALG2 WILD-TYPE 110 94 91 183
'ALG2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.417 (Fisher's exact test), Q value = 0.75

Table S5460.  Gene #497: 'ALG2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ALG2 MUTATED 1 1 1 1 1 0 3
ALG2 WILD-TYPE 59 49 48 39 62 125 96
'ALG2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.827 (Fisher's exact test), Q value = 1

Table S5461.  Gene #497: 'ALG2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ALG2 MUTATED 3 1 0 3
ALG2 WILD-TYPE 127 77 68 193
'ALG2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00456 (Fisher's exact test), Q value = 0.061

Table S5462.  Gene #497: 'ALG2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ALG2 MUTATED 2 1 3 0 1 0 0 0 0
ALG2 WILD-TYPE 38 61 25 80 68 48 43 28 74

Figure S1666.  Get High-res Image Gene #497: 'ALG2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'C9ORF131 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.016 (Fisher's exact test), Q value = 0.13

Table S5463.  Gene #498: 'C9ORF131 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
C9ORF131 MUTATED 1 0 0 3
C9ORF131 WILD-TYPE 45 58 64 40

Figure S1667.  Get High-res Image Gene #498: 'C9ORF131 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'C9ORF131 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.233 (Fisher's exact test), Q value = 0.55

Table S5464.  Gene #498: 'C9ORF131 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
C9ORF131 MUTATED 2 2 0
C9ORF131 WILD-TYPE 49 81 77
'C9ORF131 MUTATION STATUS' versus 'CN_CNMF'

P value = 6e-05 (Fisher's exact test), Q value = 0.0037

Table S5465.  Gene #498: 'C9ORF131 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
C9ORF131 MUTATED 13 0 0 0
C9ORF131 WILD-TYPE 165 183 101 20

Figure S1668.  Get High-res Image Gene #498: 'C9ORF131 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'C9ORF131 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.032 (Fisher's exact test), Q value = 0.18

Table S5466.  Gene #498: 'C9ORF131 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
C9ORF131 MUTATED 2 0 7
C9ORF131 WILD-TYPE 85 80 93

Figure S1669.  Get High-res Image Gene #498: 'C9ORF131 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'C9ORF131 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.204 (Fisher's exact test), Q value = 0.51

Table S5467.  Gene #498: 'C9ORF131 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
C9ORF131 MUTATED 0 5 5
C9ORF131 WILD-TYPE 89 155 133
'C9ORF131 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.36 (Fisher's exact test), Q value = 0.69

Table S5468.  Gene #498: 'C9ORF131 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
C9ORF131 MUTATED 6 4 0
C9ORF131 WILD-TYPE 176 129 72
'C9ORF131 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0244 (Fisher's exact test), Q value = 0.16

Table S5469.  Gene #498: 'C9ORF131 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
C9ORF131 MUTATED 0 3 6 4
C9ORF131 WILD-TYPE 112 93 86 182

Figure S1670.  Get High-res Image Gene #498: 'C9ORF131 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'C9ORF131 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 2e-05 (Fisher's exact test), Q value = 0.0017

Table S5470.  Gene #498: 'C9ORF131 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
C9ORF131 MUTATED 0 0 8 0 1 1 3
C9ORF131 WILD-TYPE 60 50 41 40 62 124 96

Figure S1671.  Get High-res Image Gene #498: 'C9ORF131 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'C9ORF131 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.251 (Fisher's exact test), Q value = 0.58

Table S5471.  Gene #498: 'C9ORF131 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
C9ORF131 MUTATED 6 2 0 4
C9ORF131 WILD-TYPE 124 76 68 192
'C9ORF131 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.134 (Fisher's exact test), Q value = 0.41

Table S5472.  Gene #498: 'C9ORF131 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
C9ORF131 MUTATED 1 3 1 1 5 0 1 0 0
C9ORF131 WILD-TYPE 39 59 27 79 64 48 42 28 74
'EXT1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.462 (Fisher's exact test), Q value = 0.79

Table S5473.  Gene #499: 'EXT1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
EXT1 MUTATED 3 2 1 3
EXT1 WILD-TYPE 43 56 63 40
'EXT1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.074 (Fisher's exact test), Q value = 0.29

Table S5474.  Gene #499: 'EXT1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
EXT1 MUTATED 5 3 1
EXT1 WILD-TYPE 46 80 76
'EXT1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0978 (Fisher's exact test), Q value = 0.34

Table S5475.  Gene #499: 'EXT1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
EXT1 MUTATED 13 5 2 0
EXT1 WILD-TYPE 165 178 99 20
'EXT1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S5476.  Gene #499: 'EXT1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
EXT1 MUTATED 3 3 4
EXT1 WILD-TYPE 84 77 96
'EXT1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.581 (Fisher's exact test), Q value = 0.89

Table S5477.  Gene #499: 'EXT1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
EXT1 MUTATED 5 5 6
EXT1 WILD-TYPE 84 155 132
'EXT1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.891 (Fisher's exact test), Q value = 1

Table S5478.  Gene #499: 'EXT1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
EXT1 MUTATED 8 6 2
EXT1 WILD-TYPE 174 127 70
'EXT1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.786 (Fisher's exact test), Q value = 1

Table S5479.  Gene #499: 'EXT1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
EXT1 MUTATED 5 4 2 9
EXT1 WILD-TYPE 107 92 90 177
'EXT1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.243 (Fisher's exact test), Q value = 0.57

Table S5480.  Gene #499: 'EXT1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
EXT1 MUTATED 3 3 2 1 1 2 8
EXT1 WILD-TYPE 57 47 47 39 62 123 91
'EXT1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.291 (Fisher's exact test), Q value = 0.62

Table S5481.  Gene #499: 'EXT1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
EXT1 MUTATED 8 1 1 8
EXT1 WILD-TYPE 122 77 67 188
'EXT1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0762 (Fisher's exact test), Q value = 0.3

Table S5482.  Gene #499: 'EXT1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
EXT1 MUTATED 4 3 2 1 5 0 2 0 1
EXT1 WILD-TYPE 36 59 26 79 64 48 41 28 73
'EXT1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0971 (Fisher's exact test), Q value = 0.34

Table S5483.  Gene #499: 'EXT1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
EXT1 MUTATED 2 0 0 2
EXT1 WILD-TYPE 31 31 27 17
'EXT1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.766 (Fisher's exact test), Q value = 1

Table S5484.  Gene #499: 'EXT1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
EXT1 MUTATED 3 0 0 1
EXT1 WILD-TYPE 51 10 24 21
'IGFBP7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.384 (Fisher's exact test), Q value = 0.71

Table S5485.  Gene #500: 'IGFBP7 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
IGFBP7 MUTATED 0 3 1 0
IGFBP7 WILD-TYPE 178 180 100 20
'IGFBP7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.688 (Fisher's exact test), Q value = 0.97

Table S5486.  Gene #500: 'IGFBP7 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
IGFBP7 MUTATED 1 2 1
IGFBP7 WILD-TYPE 86 78 99
'IGFBP7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.374 (Fisher's exact test), Q value = 0.7

Table S5487.  Gene #500: 'IGFBP7 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
IGFBP7 MUTATED 0 2 3
IGFBP7 WILD-TYPE 89 158 135
'IGFBP7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.717 (Fisher's exact test), Q value = 0.99

Table S5488.  Gene #500: 'IGFBP7 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
IGFBP7 MUTATED 3 2 0
IGFBP7 WILD-TYPE 179 131 72
'IGFBP7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.208 (Fisher's exact test), Q value = 0.52

Table S5489.  Gene #500: 'IGFBP7 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
IGFBP7 MUTATED 3 0 1 1
IGFBP7 WILD-TYPE 109 96 91 185
'IGFBP7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.144 (Fisher's exact test), Q value = 0.42

Table S5490.  Gene #500: 'IGFBP7 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
IGFBP7 MUTATED 2 0 0 0 2 0 1
IGFBP7 WILD-TYPE 58 50 49 40 61 125 98
'IGFBP7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.406 (Fisher's exact test), Q value = 0.73

Table S5491.  Gene #500: 'IGFBP7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
IGFBP7 MUTATED 3 1 0 1
IGFBP7 WILD-TYPE 127 77 68 195
'IGFBP7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.786 (Fisher's exact test), Q value = 1

Table S5492.  Gene #500: 'IGFBP7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
IGFBP7 MUTATED 0 1 1 1 1 1 0 0 0
IGFBP7 WILD-TYPE 40 61 27 79 68 47 43 28 74
'C6ORF89 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0319 (Fisher's exact test), Q value = 0.18

Table S5493.  Gene #501: 'C6ORF89 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
C6ORF89 MUTATED 3 0 0 1
C6ORF89 WILD-TYPE 43 58 64 42

Figure S1672.  Get High-res Image Gene #501: 'C6ORF89 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'C6ORF89 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.557 (Fisher's exact test), Q value = 0.87

Table S5494.  Gene #501: 'C6ORF89 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
C6ORF89 MUTATED 2 1 1
C6ORF89 WILD-TYPE 49 82 76
'C6ORF89 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0178 (Fisher's exact test), Q value = 0.13

Table S5495.  Gene #501: 'C6ORF89 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
C6ORF89 MUTATED 4 1 0 2
C6ORF89 WILD-TYPE 174 182 101 18

Figure S1673.  Get High-res Image Gene #501: 'C6ORF89 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'C6ORF89 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0594 (Fisher's exact test), Q value = 0.27

Table S5496.  Gene #501: 'C6ORF89 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
C6ORF89 MUTATED 3 0 0
C6ORF89 WILD-TYPE 84 80 100
'C6ORF89 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.731 (Fisher's exact test), Q value = 1

Table S5497.  Gene #501: 'C6ORF89 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
C6ORF89 MUTATED 2 2 1
C6ORF89 WILD-TYPE 87 158 137
'C6ORF89 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.851 (Fisher's exact test), Q value = 1

Table S5498.  Gene #501: 'C6ORF89 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
C6ORF89 MUTATED 3 1 1
C6ORF89 WILD-TYPE 179 132 71
'C6ORF89 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.531 (Fisher's exact test), Q value = 0.85

Table S5499.  Gene #501: 'C6ORF89 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
C6ORF89 MUTATED 1 0 2 4
C6ORF89 WILD-TYPE 111 96 90 182
'C6ORF89 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.757 (Fisher's exact test), Q value = 1

Table S5500.  Gene #501: 'C6ORF89 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
C6ORF89 MUTATED 2 0 1 0 1 1 2
C6ORF89 WILD-TYPE 58 50 48 40 62 124 97
'C6ORF89 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.943 (Fisher's exact test), Q value = 1

Table S5501.  Gene #501: 'C6ORF89 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
C6ORF89 MUTATED 1 1 1 4
C6ORF89 WILD-TYPE 129 77 67 192
'C6ORF89 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.589 (Fisher's exact test), Q value = 0.89

Table S5502.  Gene #501: 'C6ORF89 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
C6ORF89 MUTATED 1 1 0 1 3 0 1 0 0
C6ORF89 WILD-TYPE 39 61 28 79 66 48 42 28 74
'C6ORF89 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.703 (Fisher's exact test), Q value = 0.97

Table S5503.  Gene #501: 'C6ORF89 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
C6ORF89 MUTATED 2 1 0 0
C6ORF89 WILD-TYPE 31 30 27 19
'C6ORF89 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.561 (Fisher's exact test), Q value = 0.87

Table S5504.  Gene #501: 'C6ORF89 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
C6ORF89 MUTATED 3 0 0 0
C6ORF89 WILD-TYPE 51 10 24 22
'ART5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0636 (Fisher's exact test), Q value = 0.27

Table S5505.  Gene #502: 'ART5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ART5 MUTATED 8 1 1 0
ART5 WILD-TYPE 170 182 100 20
'ART5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.142 (Fisher's exact test), Q value = 0.42

Table S5506.  Gene #502: 'ART5 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ART5 MUTATED 4 0 4
ART5 WILD-TYPE 83 80 96
'ART5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.733 (Fisher's exact test), Q value = 1

Table S5507.  Gene #502: 'ART5 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ART5 MUTATED 1 3 4
ART5 WILD-TYPE 88 157 134
'ART5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.642 (Fisher's exact test), Q value = 0.93

Table S5508.  Gene #502: 'ART5 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ART5 MUTATED 3 4 1
ART5 WILD-TYPE 179 129 71
'ART5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0557 (Fisher's exact test), Q value = 0.26

Table S5509.  Gene #502: 'ART5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ART5 MUTATED 0 5 2 3
ART5 WILD-TYPE 112 91 90 183
'ART5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00778 (Fisher's exact test), Q value = 0.082

Table S5510.  Gene #502: 'ART5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ART5 MUTATED 0 2 5 0 0 2 1
ART5 WILD-TYPE 60 48 44 40 63 123 98

Figure S1674.  Get High-res Image Gene #502: 'ART5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ART5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.701 (Fisher's exact test), Q value = 0.97

Table S5511.  Gene #502: 'ART5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ART5 MUTATED 3 2 0 5
ART5 WILD-TYPE 127 76 68 191
'ART5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.741 (Fisher's exact test), Q value = 1

Table S5512.  Gene #502: 'ART5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ART5 MUTATED 1 1 1 3 3 0 0 0 1
ART5 WILD-TYPE 39 61 27 77 66 48 43 28 73
'ART5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.137 (Fisher's exact test), Q value = 0.41

Table S5513.  Gene #502: 'ART5 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
ART5 MUTATED 1 0 0 2
ART5 WILD-TYPE 32 31 27 17
'ART5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.447 (Fisher's exact test), Q value = 0.77

Table S5514.  Gene #502: 'ART5 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
ART5 MUTATED 1 0 2 0
ART5 WILD-TYPE 53 10 22 22
'CUL2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00402 (Fisher's exact test), Q value = 0.058

Table S5515.  Gene #503: 'CUL2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
CUL2 MUTATED 1 0 0 4
CUL2 WILD-TYPE 45 58 64 39

Figure S1675.  Get High-res Image Gene #503: 'CUL2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'CUL2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.253 (Fisher's exact test), Q value = 0.58

Table S5516.  Gene #503: 'CUL2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
CUL2 MUTATED 3 1 1
CUL2 WILD-TYPE 48 82 76
'CUL2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0118 (Fisher's exact test), Q value = 0.11

Table S5517.  Gene #503: 'CUL2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
CUL2 MUTATED 12 2 1 0
CUL2 WILD-TYPE 166 181 100 20

Figure S1676.  Get High-res Image Gene #503: 'CUL2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'CUL2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.368 (Fisher's exact test), Q value = 0.7

Table S5518.  Gene #503: 'CUL2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
CUL2 MUTATED 4 1 5
CUL2 WILD-TYPE 83 79 95
'CUL2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0736 (Fisher's exact test), Q value = 0.29

Table S5519.  Gene #503: 'CUL2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
CUL2 MUTATED 0 8 6
CUL2 WILD-TYPE 89 152 132
'CUL2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0809 (Fisher's exact test), Q value = 0.31

Table S5520.  Gene #503: 'CUL2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
CUL2 MUTATED 6 8 0
CUL2 WILD-TYPE 176 125 72
'CUL2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.635 (Fisher's exact test), Q value = 0.93

Table S5521.  Gene #503: 'CUL2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
CUL2 MUTATED 2 4 4 5
CUL2 WILD-TYPE 110 92 88 181
'CUL2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00192 (Fisher's exact test), Q value = 0.037

Table S5522.  Gene #503: 'CUL2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
CUL2 MUTATED 3 1 6 0 1 0 4
CUL2 WILD-TYPE 57 49 43 40 62 125 95

Figure S1677.  Get High-res Image Gene #503: 'CUL2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CUL2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.38 (Fisher's exact test), Q value = 0.71

Table S5523.  Gene #503: 'CUL2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
CUL2 MUTATED 6 2 0 6
CUL2 WILD-TYPE 124 76 68 190
'CUL2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0538 (Fisher's exact test), Q value = 0.25

Table S5524.  Gene #503: 'CUL2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
CUL2 MUTATED 1 2 1 0 7 1 1 0 1
CUL2 WILD-TYPE 39 60 27 80 62 47 42 28 73
'CUL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00429 (Fisher's exact test), Q value = 0.06

Table S5525.  Gene #503: 'CUL2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
CUL2 MUTATED 0 0 0 3
CUL2 WILD-TYPE 33 31 27 16

Figure S1678.  Get High-res Image Gene #503: 'CUL2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'CUL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.446 (Fisher's exact test), Q value = 0.77

Table S5526.  Gene #503: 'CUL2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
CUL2 MUTATED 1 0 2 0
CUL2 WILD-TYPE 53 10 22 22
'CDC6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.626 (Fisher's exact test), Q value = 0.92

Table S5527.  Gene #504: 'CDC6 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
CDC6 MUTATED 6 3 1 0
CDC6 WILD-TYPE 172 180 100 20
'CDC6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.399 (Fisher's exact test), Q value = 0.72

Table S5528.  Gene #504: 'CDC6 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
CDC6 MUTATED 5 2 2
CDC6 WILD-TYPE 82 78 98
'CDC6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.598 (Fisher's exact test), Q value = 0.9

Table S5529.  Gene #504: 'CDC6 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
CDC6 MUTATED 3 3 2
CDC6 WILD-TYPE 86 157 136
'CDC6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.512 (Fisher's exact test), Q value = 0.83

Table S5530.  Gene #504: 'CDC6 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
CDC6 MUTATED 4 4 0
CDC6 WILD-TYPE 178 129 72
'CDC6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.213 (Fisher's exact test), Q value = 0.52

Table S5531.  Gene #504: 'CDC6 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
CDC6 MUTATED 1 4 3 2
CDC6 WILD-TYPE 111 92 89 184
'CDC6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0286 (Fisher's exact test), Q value = 0.17

Table S5532.  Gene #504: 'CDC6 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
CDC6 MUTATED 3 1 1 3 1 0 1
CDC6 WILD-TYPE 57 49 48 37 62 125 98

Figure S1679.  Get High-res Image Gene #504: 'CDC6 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CDC6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.307 (Fisher's exact test), Q value = 0.64

Table S5533.  Gene #504: 'CDC6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
CDC6 MUTATED 5 2 1 2
CDC6 WILD-TYPE 125 76 67 194
'CDC6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.163 (Fisher's exact test), Q value = 0.46

Table S5534.  Gene #504: 'CDC6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
CDC6 MUTATED 4 2 0 1 1 0 1 0 1
CDC6 WILD-TYPE 36 60 28 79 68 48 42 28 73
'CDC6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.194 (Fisher's exact test), Q value = 0.5

Table S5535.  Gene #504: 'CDC6 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
CDC6 MUTATED 0 1 1 2
CDC6 WILD-TYPE 33 30 26 17
'CDC6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.869 (Fisher's exact test), Q value = 1

Table S5536.  Gene #504: 'CDC6 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
CDC6 MUTATED 3 0 1 0
CDC6 WILD-TYPE 51 10 23 22
'SOX7 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0307 (Fisher's exact test), Q value = 0.18

Table S5537.  Gene #505: 'SOX7 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
SOX7 MUTATED 3 0 0 1
SOX7 WILD-TYPE 43 58 64 42

Figure S1680.  Get High-res Image Gene #505: 'SOX7 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'SOX7 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0619 (Fisher's exact test), Q value = 0.27

Table S5538.  Gene #505: 'SOX7 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
SOX7 MUTATED 3 1 0
SOX7 WILD-TYPE 48 82 77
'SOX7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0302 (Fisher's exact test), Q value = 0.18

Table S5539.  Gene #505: 'SOX7 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
SOX7 MUTATED 9 2 0 0
SOX7 WILD-TYPE 169 181 101 20

Figure S1681.  Get High-res Image Gene #505: 'SOX7 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'SOX7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.82 (Fisher's exact test), Q value = 1

Table S5540.  Gene #505: 'SOX7 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
SOX7 MUTATED 2 2 4
SOX7 WILD-TYPE 85 78 96
'SOX7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0844 (Fisher's exact test), Q value = 0.31

Table S5541.  Gene #505: 'SOX7 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
SOX7 MUTATED 0 5 7
SOX7 WILD-TYPE 89 155 131
'SOX7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.07 (Fisher's exact test), Q value = 0.29

Table S5542.  Gene #505: 'SOX7 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
SOX7 MUTATED 3 8 1
SOX7 WILD-TYPE 179 125 71
'SOX7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.366 (Fisher's exact test), Q value = 0.7

Table S5543.  Gene #505: 'SOX7 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
SOX7 MUTATED 2 5 1 4
SOX7 WILD-TYPE 110 91 91 182
'SOX7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0392 (Fisher's exact test), Q value = 0.21

Table S5544.  Gene #505: 'SOX7 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
SOX7 MUTATED 1 3 3 0 1 0 4
SOX7 WILD-TYPE 59 47 46 40 62 125 95

Figure S1682.  Get High-res Image Gene #505: 'SOX7 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'SOX7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.927 (Fisher's exact test), Q value = 1

Table S5545.  Gene #505: 'SOX7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
SOX7 MUTATED 3 1 2 6
SOX7 WILD-TYPE 127 77 66 190
'SOX7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.529 (Fisher's exact test), Q value = 0.85

Table S5546.  Gene #505: 'SOX7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
SOX7 MUTATED 1 1 1 1 4 0 2 1 1
SOX7 WILD-TYPE 39 61 27 79 65 48 41 27 73
'SOX7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.78 (Fisher's exact test), Q value = 1

Table S5547.  Gene #505: 'SOX7 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
SOX7 MUTATED 1 0 1 1
SOX7 WILD-TYPE 32 31 26 18
'SOX7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.139 (Fisher's exact test), Q value = 0.42

Table S5548.  Gene #505: 'SOX7 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
SOX7 MUTATED 0 0 2 1
SOX7 WILD-TYPE 54 10 22 21
'ZNF644 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0272 (Fisher's exact test), Q value = 0.17

Table S5549.  Gene #506: 'ZNF644 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ZNF644 MUTATED 3 0 0 2
ZNF644 WILD-TYPE 43 58 64 41

Figure S1683.  Get High-res Image Gene #506: 'ZNF644 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'ZNF644 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00665 (Fisher's exact test), Q value = 0.075

Table S5550.  Gene #506: 'ZNF644 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ZNF644 MUTATED 4 0 1
ZNF644 WILD-TYPE 47 83 76

Figure S1684.  Get High-res Image Gene #506: 'ZNF644 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'ZNF644 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0103 (Fisher's exact test), Q value = 0.097

Table S5551.  Gene #506: 'ZNF644 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ZNF644 MUTATED 14 2 4 1
ZNF644 WILD-TYPE 164 181 97 19

Figure S1685.  Get High-res Image Gene #506: 'ZNF644 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ZNF644 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00988 (Fisher's exact test), Q value = 0.095

Table S5552.  Gene #506: 'ZNF644 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ZNF644 MUTATED 7 0 9
ZNF644 WILD-TYPE 80 80 91

Figure S1686.  Get High-res Image Gene #506: 'ZNF644 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'ZNF644 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.145 (Fisher's exact test), Q value = 0.42

Table S5553.  Gene #506: 'ZNF644 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ZNF644 MUTATED 1 6 9
ZNF644 WILD-TYPE 88 154 129
'ZNF644 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.592 (Fisher's exact test), Q value = 0.9

Table S5554.  Gene #506: 'ZNF644 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ZNF644 MUTATED 8 4 4
ZNF644 WILD-TYPE 174 129 68
'ZNF644 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.104 (Fisher's exact test), Q value = 0.36

Table S5555.  Gene #506: 'ZNF644 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ZNF644 MUTATED 2 8 5 6
ZNF644 WILD-TYPE 110 88 87 180
'ZNF644 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0187 (Fisher's exact test), Q value = 0.14

Table S5556.  Gene #506: 'ZNF644 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ZNF644 MUTATED 3 2 5 2 4 0 5
ZNF644 WILD-TYPE 57 48 44 38 59 125 94

Figure S1687.  Get High-res Image Gene #506: 'ZNF644 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ZNF644 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.798 (Fisher's exact test), Q value = 1

Table S5557.  Gene #506: 'ZNF644 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ZNF644 MUTATED 5 5 2 9
ZNF644 WILD-TYPE 125 73 66 187
'ZNF644 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0163 (Fisher's exact test), Q value = 0.13

Table S5558.  Gene #506: 'ZNF644 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ZNF644 MUTATED 0 5 0 2 9 0 2 1 2
ZNF644 WILD-TYPE 40 57 28 78 60 48 41 27 72

Figure S1688.  Get High-res Image Gene #506: 'ZNF644 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'ZNF644 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.245 (Fisher's exact test), Q value = 0.57

Table S5559.  Gene #506: 'ZNF644 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
ZNF644 MUTATED 0 2 1 2
ZNF644 WILD-TYPE 33 29 26 17
'ZNF644 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.518 (Fisher's exact test), Q value = 0.84

Table S5560.  Gene #506: 'ZNF644 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
ZNF644 MUTATED 3 1 1 0
ZNF644 WILD-TYPE 51 9 23 22
'XPOT MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.12 (Fisher's exact test), Q value = 0.39

Table S5561.  Gene #507: 'XPOT MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
XPOT MUTATED 2 0 0 1
XPOT WILD-TYPE 44 58 64 42
'XPOT MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.254 (Fisher's exact test), Q value = 0.58

Table S5562.  Gene #507: 'XPOT MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
XPOT MUTATED 2 1 0
XPOT WILD-TYPE 49 82 77
'XPOT MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00189 (Fisher's exact test), Q value = 0.036

Table S5563.  Gene #507: 'XPOT MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
XPOT MUTATED 10 0 1 0
XPOT WILD-TYPE 168 183 100 20

Figure S1689.  Get High-res Image Gene #507: 'XPOT MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'XPOT MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.113 (Fisher's exact test), Q value = 0.37

Table S5564.  Gene #507: 'XPOT MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
XPOT MUTATED 3 0 5
XPOT WILD-TYPE 84 80 95
'XPOT MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.381 (Fisher's exact test), Q value = 0.71

Table S5565.  Gene #507: 'XPOT MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
XPOT MUTATED 1 2 5
XPOT WILD-TYPE 88 158 133
'XPOT MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.328 (Fisher's exact test), Q value = 0.66

Table S5566.  Gene #507: 'XPOT MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
XPOT MUTATED 6 1 1
XPOT WILD-TYPE 176 132 71
'XPOT MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00496 (Fisher's exact test), Q value = 0.064

Table S5567.  Gene #507: 'XPOT MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
XPOT MUTATED 0 7 1 3
XPOT WILD-TYPE 112 89 91 183

Figure S1690.  Get High-res Image Gene #507: 'XPOT MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'XPOT MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0773 (Fisher's exact test), Q value = 0.3

Table S5568.  Gene #507: 'XPOT MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
XPOT MUTATED 0 1 3 3 1 1 2
XPOT WILD-TYPE 60 49 46 37 62 124 97
'XPOT MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.418 (Fisher's exact test), Q value = 0.75

Table S5569.  Gene #507: 'XPOT MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
XPOT MUTATED 4 1 2 2
XPOT WILD-TYPE 126 77 66 194
'XPOT MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.332 (Fisher's exact test), Q value = 0.66

Table S5570.  Gene #507: 'XPOT MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
XPOT MUTATED 1 1 0 2 2 0 3 0 0
XPOT WILD-TYPE 39 61 28 78 67 48 40 28 74
'XPOT MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.168 (Fisher's exact test), Q value = 0.46

Table S5571.  Gene #507: 'XPOT MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
XPOT MUTATED 0 0 2 1
XPOT WILD-TYPE 33 31 25 18
'XPOT MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0263 (Fisher's exact test), Q value = 0.16

Table S5572.  Gene #507: 'XPOT MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
XPOT MUTATED 0 0 3 0
XPOT WILD-TYPE 54 10 21 22

Figure S1691.  Get High-res Image Gene #507: 'XPOT MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

'TIFA MUTATION STATUS' versus 'CN_CNMF'

P value = 0.814 (Fisher's exact test), Q value = 1

Table S5573.  Gene #508: 'TIFA MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
TIFA MUTATED 2 2 2 0
TIFA WILD-TYPE 176 181 99 20
'TIFA MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.449 (Fisher's exact test), Q value = 0.78

Table S5574.  Gene #508: 'TIFA MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
TIFA MUTATED 1 3 1
TIFA WILD-TYPE 86 77 99
'TIFA MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S5575.  Gene #508: 'TIFA MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
TIFA MUTATED 1 2 1
TIFA WILD-TYPE 88 158 137
'TIFA MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.526 (Fisher's exact test), Q value = 0.85

Table S5576.  Gene #508: 'TIFA MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
TIFA MUTATED 1 2 1
TIFA WILD-TYPE 181 131 71
'TIFA MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.391 (Fisher's exact test), Q value = 0.72

Table S5577.  Gene #508: 'TIFA MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
TIFA MUTATED 3 1 1 1
TIFA WILD-TYPE 109 95 91 185
'TIFA MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.238 (Fisher's exact test), Q value = 0.56

Table S5578.  Gene #508: 'TIFA MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
TIFA MUTATED 2 0 1 0 2 1 0
TIFA WILD-TYPE 58 50 48 40 61 124 99
'TIFA MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.149 (Fisher's exact test), Q value = 0.43

Table S5579.  Gene #508: 'TIFA MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
TIFA MUTATED 4 0 1 1
TIFA WILD-TYPE 126 78 67 195
'TIFA MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.57 (Fisher's exact test), Q value = 0.88

Table S5580.  Gene #508: 'TIFA MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
TIFA MUTATED 0 0 0 3 1 1 1 0 0
TIFA WILD-TYPE 40 62 28 77 68 47 42 28 74
'STK38L MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0078 (Fisher's exact test), Q value = 0.082

Table S5581.  Gene #509: 'STK38L MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
STK38L MUTATED 0 0 0 3
STK38L WILD-TYPE 46 58 64 40

Figure S1692.  Get High-res Image Gene #509: 'STK38L MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'STK38L MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S5582.  Gene #509: 'STK38L MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
STK38L MUTATED 1 1 1
STK38L WILD-TYPE 50 82 76
'STK38L MUTATION STATUS' versus 'CN_CNMF'

P value = 0.293 (Fisher's exact test), Q value = 0.62

Table S5583.  Gene #509: 'STK38L MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
STK38L MUTATED 5 2 1 1
STK38L WILD-TYPE 173 181 100 19
'STK38L MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.716 (Fisher's exact test), Q value = 0.99

Table S5584.  Gene #509: 'STK38L MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
STK38L MUTATED 3 1 3
STK38L WILD-TYPE 84 79 97
'STK38L MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.317 (Fisher's exact test), Q value = 0.65

Table S5585.  Gene #509: 'STK38L MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
STK38L MUTATED 4 2 3
STK38L WILD-TYPE 85 158 135
'STK38L MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S5586.  Gene #509: 'STK38L MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
STK38L MUTATED 5 3 1
STK38L WILD-TYPE 177 130 71
'STK38L MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.826 (Fisher's exact test), Q value = 1

Table S5587.  Gene #509: 'STK38L MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
STK38L MUTATED 2 3 2 3
STK38L WILD-TYPE 110 93 90 183
'STK38L MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0854 (Fisher's exact test), Q value = 0.32

Table S5588.  Gene #509: 'STK38L MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
STK38L MUTATED 2 3 0 1 2 0 2
STK38L WILD-TYPE 58 47 49 39 61 125 97
'STK38L MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0191 (Fisher's exact test), Q value = 0.14

Table S5589.  Gene #509: 'STK38L MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
STK38L MUTATED 7 0 0 2
STK38L WILD-TYPE 123 78 68 194

Figure S1693.  Get High-res Image Gene #509: 'STK38L MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'STK38L MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.455 (Fisher's exact test), Q value = 0.78

Table S5590.  Gene #509: 'STK38L MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
STK38L MUTATED 2 1 1 3 1 0 1 0 0
STK38L WILD-TYPE 38 61 27 77 68 48 42 28 74
'STK38L MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S5591.  Gene #509: 'STK38L MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
STK38L MUTATED 1 1 1 0
STK38L WILD-TYPE 32 30 26 19
'STK38L MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.841 (Fisher's exact test), Q value = 1

Table S5592.  Gene #509: 'STK38L MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
STK38L MUTATED 2 0 0 1
STK38L WILD-TYPE 52 10 24 21
'SMARCA4 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.586 (Fisher's exact test), Q value = 0.89

Table S5593.  Gene #510: 'SMARCA4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
SMARCA4 MUTATED 2 1 2 3
SMARCA4 WILD-TYPE 44 57 62 40
'SMARCA4 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.529 (Fisher's exact test), Q value = 0.85

Table S5594.  Gene #510: 'SMARCA4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
SMARCA4 MUTATED 3 2 3
SMARCA4 WILD-TYPE 48 81 74
'SMARCA4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00095 (Fisher's exact test), Q value = 0.024

Table S5595.  Gene #510: 'SMARCA4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
SMARCA4 MUTATED 23 6 3 0
SMARCA4 WILD-TYPE 155 177 98 20

Figure S1694.  Get High-res Image Gene #510: 'SMARCA4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'SMARCA4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.213 (Fisher's exact test), Q value = 0.52

Table S5596.  Gene #510: 'SMARCA4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
SMARCA4 MUTATED 11 4 10
SMARCA4 WILD-TYPE 76 76 90
'SMARCA4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.784 (Fisher's exact test), Q value = 1

Table S5597.  Gene #510: 'SMARCA4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
SMARCA4 MUTATED 5 10 11
SMARCA4 WILD-TYPE 84 150 127
'SMARCA4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.74 (Fisher's exact test), Q value = 1

Table S5598.  Gene #510: 'SMARCA4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
SMARCA4 MUTATED 14 7 5
SMARCA4 WILD-TYPE 168 126 67
'SMARCA4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.102 (Fisher's exact test), Q value = 0.35

Table S5599.  Gene #510: 'SMARCA4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
SMARCA4 MUTATED 5 10 9 8
SMARCA4 WILD-TYPE 107 86 83 178
'SMARCA4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00095 (Fisher's exact test), Q value = 0.024

Table S5600.  Gene #510: 'SMARCA4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
SMARCA4 MUTATED 3 2 12 1 5 4 5
SMARCA4 WILD-TYPE 57 48 37 39 58 121 94

Figure S1695.  Get High-res Image Gene #510: 'SMARCA4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'SMARCA4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.138 (Fisher's exact test), Q value = 0.41

Table S5601.  Gene #510: 'SMARCA4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
SMARCA4 MUTATED 11 8 1 13
SMARCA4 WILD-TYPE 119 70 67 183
'SMARCA4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0274 (Fisher's exact test), Q value = 0.17

Table S5602.  Gene #510: 'SMARCA4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
SMARCA4 MUTATED 3 8 3 5 10 1 1 0 2
SMARCA4 WILD-TYPE 37 54 25 75 59 47 42 28 72

Figure S1696.  Get High-res Image Gene #510: 'SMARCA4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'SMARCA4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0862 (Fisher's exact test), Q value = 0.32

Table S5603.  Gene #510: 'SMARCA4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
SMARCA4 MUTATED 3 1 2 5
SMARCA4 WILD-TYPE 30 30 25 14
'SMARCA4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.442 (Fisher's exact test), Q value = 0.77

Table S5604.  Gene #510: 'SMARCA4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
SMARCA4 MUTATED 6 0 4 1
SMARCA4 WILD-TYPE 48 10 20 21
'ZNF691 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.591 (Fisher's exact test), Q value = 0.9

Table S5605.  Gene #511: 'ZNF691 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ZNF691 MUTATED 5 2 1 0
ZNF691 WILD-TYPE 173 181 100 20
'ZNF691 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S5606.  Gene #511: 'ZNF691 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ZNF691 MUTATED 2 2 2
ZNF691 WILD-TYPE 85 78 98
'ZNF691 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.631 (Fisher's exact test), Q value = 0.93

Table S5607.  Gene #511: 'ZNF691 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ZNF691 MUTATED 0 3 2
ZNF691 WILD-TYPE 89 157 136
'ZNF691 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.596 (Fisher's exact test), Q value = 0.9

Table S5608.  Gene #511: 'ZNF691 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ZNF691 MUTATED 2 3 0
ZNF691 WILD-TYPE 180 130 72
'ZNF691 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.63 (Fisher's exact test), Q value = 0.93

Table S5609.  Gene #511: 'ZNF691 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ZNF691 MUTATED 2 3 1 2
ZNF691 WILD-TYPE 110 93 91 184
'ZNF691 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.113 (Fisher's exact test), Q value = 0.37

Table S5610.  Gene #511: 'ZNF691 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ZNF691 MUTATED 2 0 3 1 0 1 1
ZNF691 WILD-TYPE 58 50 46 39 63 124 98
'ZNF691 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.156 (Fisher's exact test), Q value = 0.44

Table S5611.  Gene #511: 'ZNF691 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ZNF691 MUTATED 5 0 1 2
ZNF691 WILD-TYPE 125 78 67 194
'ZNF691 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.196 (Fisher's exact test), Q value = 0.5

Table S5612.  Gene #511: 'ZNF691 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ZNF691 MUTATED 0 1 0 0 4 2 0 0 1
ZNF691 WILD-TYPE 40 61 28 80 65 46 43 28 73
'ZNF691 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.136 (Fisher's exact test), Q value = 0.41

Table S5613.  Gene #511: 'ZNF691 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
ZNF691 MUTATED 1 0 0 2
ZNF691 WILD-TYPE 32 31 27 17
'ZNF691 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.693 (Fisher's exact test), Q value = 0.97

Table S5614.  Gene #511: 'ZNF691 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
ZNF691 MUTATED 1 0 1 1
ZNF691 WILD-TYPE 53 10 23 21
'UBR4 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0296 (Fisher's exact test), Q value = 0.18

Table S5615.  Gene #512: 'UBR4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
UBR4 MUTATED 6 1 1 3
UBR4 WILD-TYPE 40 57 63 40

Figure S1697.  Get High-res Image Gene #512: 'UBR4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'UBR4 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0776 (Fisher's exact test), Q value = 0.3

Table S5616.  Gene #512: 'UBR4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
UBR4 MUTATED 6 3 2
UBR4 WILD-TYPE 45 80 75
'UBR4 MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S5617.  Gene #512: 'UBR4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
UBR4 MUTATED 33 9 3 1
UBR4 WILD-TYPE 145 174 98 19

Figure S1698.  Get High-res Image Gene #512: 'UBR4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'UBR4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.191 (Fisher's exact test), Q value = 0.49

Table S5618.  Gene #512: 'UBR4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
UBR4 MUTATED 14 6 15
UBR4 WILD-TYPE 73 74 85
'UBR4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0211 (Fisher's exact test), Q value = 0.15

Table S5619.  Gene #512: 'UBR4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
UBR4 MUTATED 6 11 22
UBR4 WILD-TYPE 83 149 116

Figure S1699.  Get High-res Image Gene #512: 'UBR4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'UBR4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.837 (Fisher's exact test), Q value = 1

Table S5620.  Gene #512: 'UBR4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
UBR4 MUTATED 20 13 6
UBR4 WILD-TYPE 162 120 66
'UBR4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0509 (Fisher's exact test), Q value = 0.24

Table S5621.  Gene #512: 'UBR4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
UBR4 MUTATED 8 14 13 12
UBR4 WILD-TYPE 104 82 79 174
'UBR4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S5622.  Gene #512: 'UBR4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
UBR4 MUTATED 6 8 16 2 3 3 9
UBR4 WILD-TYPE 54 42 33 38 60 122 90

Figure S1700.  Get High-res Image Gene #512: 'UBR4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'UBR4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0191 (Fisher's exact test), Q value = 0.14

Table S5623.  Gene #512: 'UBR4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
UBR4 MUTATED 19 7 1 20
UBR4 WILD-TYPE 111 71 67 176

Figure S1701.  Get High-res Image Gene #512: 'UBR4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'UBR4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00069 (Fisher's exact test), Q value = 0.019

Table S5624.  Gene #512: 'UBR4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
UBR4 MUTATED 6 8 2 7 17 2 3 0 2
UBR4 WILD-TYPE 34 54 26 73 52 46 40 28 72

Figure S1702.  Get High-res Image Gene #512: 'UBR4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'UBR4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0206 (Fisher's exact test), Q value = 0.14

Table S5625.  Gene #512: 'UBR4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
UBR4 MUTATED 5 1 0 4
UBR4 WILD-TYPE 28 30 27 15

Figure S1703.  Get High-res Image Gene #512: 'UBR4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'UBR4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.596 (Fisher's exact test), Q value = 0.9

Table S5626.  Gene #512: 'UBR4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
UBR4 MUTATED 6 0 1 3
UBR4 WILD-TYPE 48 10 23 19
'LPCAT3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.384 (Fisher's exact test), Q value = 0.71

Table S5627.  Gene #513: 'LPCAT3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
LPCAT3 MUTATED 4 1 0 0
LPCAT3 WILD-TYPE 174 182 101 20
'LPCAT3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.778 (Fisher's exact test), Q value = 1

Table S5628.  Gene #513: 'LPCAT3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
LPCAT3 MUTATED 1 0 2
LPCAT3 WILD-TYPE 86 80 98
'LPCAT3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.361 (Fisher's exact test), Q value = 0.69

Table S5629.  Gene #513: 'LPCAT3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
LPCAT3 MUTATED 0 1 3
LPCAT3 WILD-TYPE 89 159 135
'LPCAT3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.671 (Fisher's exact test), Q value = 0.95

Table S5630.  Gene #513: 'LPCAT3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
LPCAT3 MUTATED 3 1 0
LPCAT3 WILD-TYPE 179 132 72
'LPCAT3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.456 (Fisher's exact test), Q value = 0.78

Table S5631.  Gene #513: 'LPCAT3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
LPCAT3 MUTATED 0 1 2 2
LPCAT3 WILD-TYPE 112 95 90 184
'LPCAT3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.45 (Fisher's exact test), Q value = 0.78

Table S5632.  Gene #513: 'LPCAT3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
LPCAT3 MUTATED 1 0 2 0 0 1 1
LPCAT3 WILD-TYPE 59 50 47 40 63 124 98
'LPCAT3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.306 (Fisher's exact test), Q value = 0.64

Table S5633.  Gene #513: 'LPCAT3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
LPCAT3 MUTATED 3 0 0 1
LPCAT3 WILD-TYPE 127 78 68 195
'LPCAT3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.914 (Fisher's exact test), Q value = 1

Table S5634.  Gene #513: 'LPCAT3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
LPCAT3 MUTATED 0 1 0 1 1 0 1 0 0
LPCAT3 WILD-TYPE 40 61 28 79 68 48 42 28 74
'LPCAT3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00422 (Fisher's exact test), Q value = 0.059

Table S5635.  Gene #513: 'LPCAT3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
LPCAT3 MUTATED 0 0 0 3
LPCAT3 WILD-TYPE 33 31 27 16

Figure S1704.  Get High-res Image Gene #513: 'LPCAT3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'LPCAT3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S5636.  Gene #513: 'LPCAT3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
LPCAT3 MUTATED 2 0 1 0
LPCAT3 WILD-TYPE 52 10 23 22
'STX7 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0736 (Fisher's exact test), Q value = 0.29

Table S5637.  Gene #514: 'STX7 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
STX7 MUTATED 2 0 0 2
STX7 WILD-TYPE 44 58 64 41
'STX7 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.555 (Fisher's exact test), Q value = 0.87

Table S5638.  Gene #514: 'STX7 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
STX7 MUTATED 2 1 1
STX7 WILD-TYPE 49 82 76
'STX7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.122 (Fisher's exact test), Q value = 0.39

Table S5639.  Gene #514: 'STX7 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
STX7 MUTATED 4 0 0 0
STX7 WILD-TYPE 174 183 101 20
'STX7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.057 (Fisher's exact test), Q value = 0.26

Table S5640.  Gene #514: 'STX7 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
STX7 MUTATED 0 0 3
STX7 WILD-TYPE 89 160 135
'STX7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.295 (Fisher's exact test), Q value = 0.62

Table S5641.  Gene #514: 'STX7 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
STX7 MUTATED 3 0 0
STX7 WILD-TYPE 179 133 72
'STX7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.283 (Fisher's exact test), Q value = 0.61

Table S5642.  Gene #514: 'STX7 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
STX7 MUTATED 0 0 1 4
STX7 WILD-TYPE 112 96 91 182
'STX7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.639 (Fisher's exact test), Q value = 0.93

Table S5643.  Gene #514: 'STX7 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
STX7 MUTATED 0 0 0 0 1 1 3
STX7 WILD-TYPE 60 50 49 40 62 124 96
'STX7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.432 (Fisher's exact test), Q value = 0.76

Table S5644.  Gene #514: 'STX7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
STX7 MUTATED 0 1 0 3
STX7 WILD-TYPE 130 77 68 193
'STX7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.738 (Fisher's exact test), Q value = 1

Table S5645.  Gene #514: 'STX7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
STX7 MUTATED 0 1 1 1 1 0 0 0 0
STX7 WILD-TYPE 40 61 27 79 68 48 43 28 74
'SLC2A3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.289 (Fisher's exact test), Q value = 0.62

Table S5646.  Gene #515: 'SLC2A3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
SLC2A3 MUTATED 8 3 1 0
SLC2A3 WILD-TYPE 170 180 100 20
'SLC2A3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.312 (Fisher's exact test), Q value = 0.64

Table S5647.  Gene #515: 'SLC2A3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
SLC2A3 MUTATED 5 1 5
SLC2A3 WILD-TYPE 82 79 95
'SLC2A3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.676 (Fisher's exact test), Q value = 0.96

Table S5648.  Gene #515: 'SLC2A3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
SLC2A3 MUTATED 3 3 5
SLC2A3 WILD-TYPE 86 157 133
'SLC2A3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S5649.  Gene #515: 'SLC2A3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
SLC2A3 MUTATED 5 4 2
SLC2A3 WILD-TYPE 177 129 70
'SLC2A3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0208 (Fisher's exact test), Q value = 0.15

Table S5650.  Gene #515: 'SLC2A3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
SLC2A3 MUTATED 2 6 3 1
SLC2A3 WILD-TYPE 110 90 89 185

Figure S1705.  Get High-res Image Gene #515: 'SLC2A3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'SLC2A3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00707 (Fisher's exact test), Q value = 0.077

Table S5651.  Gene #515: 'SLC2A3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
SLC2A3 MUTATED 1 3 4 2 1 0 1
SLC2A3 WILD-TYPE 59 47 45 38 62 125 98

Figure S1706.  Get High-res Image Gene #515: 'SLC2A3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'SLC2A3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.578 (Fisher's exact test), Q value = 0.88

Table S5652.  Gene #515: 'SLC2A3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
SLC2A3 MUTATED 5 2 2 3
SLC2A3 WILD-TYPE 125 76 66 193
'SLC2A3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.357 (Fisher's exact test), Q value = 0.69

Table S5653.  Gene #515: 'SLC2A3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
SLC2A3 MUTATED 3 1 0 1 2 1 3 0 1
SLC2A3 WILD-TYPE 37 61 28 79 67 47 40 28 73
'SLC2A3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.228 (Fisher's exact test), Q value = 0.55

Table S5654.  Gene #515: 'SLC2A3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
SLC2A3 MUTATED 3 0 1 2
SLC2A3 WILD-TYPE 30 31 26 17
'SLC2A3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.852 (Fisher's exact test), Q value = 1

Table S5655.  Gene #515: 'SLC2A3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
SLC2A3 MUTATED 3 0 1 2
SLC2A3 WILD-TYPE 51 10 23 20
'HDAC1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.538 (Fisher's exact test), Q value = 0.86

Table S5656.  Gene #516: 'HDAC1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
HDAC1 MUTATED 3 1 0 0
HDAC1 WILD-TYPE 175 182 101 20
'HDAC1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.112 (Fisher's exact test), Q value = 0.37

Table S5657.  Gene #516: 'HDAC1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
HDAC1 MUTATED 0 0 3
HDAC1 WILD-TYPE 87 80 97
'HDAC1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.543 (Fisher's exact test), Q value = 0.86

Table S5658.  Gene #516: 'HDAC1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
HDAC1 MUTATED 1 1 3
HDAC1 WILD-TYPE 88 159 135
'HDAC1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.717 (Fisher's exact test), Q value = 0.99

Table S5659.  Gene #516: 'HDAC1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
HDAC1 MUTATED 3 2 0
HDAC1 WILD-TYPE 179 131 72
'HDAC1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.175 (Fisher's exact test), Q value = 0.47

Table S5660.  Gene #516: 'HDAC1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
HDAC1 MUTATED 1 3 0 1
HDAC1 WILD-TYPE 111 93 92 185
'HDAC1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.155 (Fisher's exact test), Q value = 0.44

Table S5661.  Gene #516: 'HDAC1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
HDAC1 MUTATED 1 2 1 0 0 0 1
HDAC1 WILD-TYPE 59 48 48 40 63 125 98
'HDAC1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.743 (Fisher's exact test), Q value = 1

Table S5662.  Gene #516: 'HDAC1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
HDAC1 MUTATED 2 0 0 2
HDAC1 WILD-TYPE 128 78 68 194
'HDAC1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.665 (Fisher's exact test), Q value = 0.95

Table S5663.  Gene #516: 'HDAC1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
HDAC1 MUTATED 1 0 0 2 1 0 0 0 0
HDAC1 WILD-TYPE 39 62 28 78 68 48 43 28 74
'RUFY1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.164 (Fisher's exact test), Q value = 0.46

Table S5664.  Gene #517: 'RUFY1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
RUFY1 MUTATED 8 2 3 1
RUFY1 WILD-TYPE 170 181 98 19
'RUFY1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.559 (Fisher's exact test), Q value = 0.87

Table S5665.  Gene #517: 'RUFY1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
RUFY1 MUTATED 3 3 7
RUFY1 WILD-TYPE 84 77 93
'RUFY1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.868 (Fisher's exact test), Q value = 1

Table S5666.  Gene #517: 'RUFY1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
RUFY1 MUTATED 2 6 4
RUFY1 WILD-TYPE 87 154 134
'RUFY1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.499 (Fisher's exact test), Q value = 0.83

Table S5667.  Gene #517: 'RUFY1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
RUFY1 MUTATED 4 6 2
RUFY1 WILD-TYPE 178 127 70
'RUFY1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00054 (Fisher's exact test), Q value = 0.016

Table S5668.  Gene #517: 'RUFY1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
RUFY1 MUTATED 3 9 1 1
RUFY1 WILD-TYPE 109 87 91 185

Figure S1707.  Get High-res Image Gene #517: 'RUFY1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'RUFY1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00057 (Fisher's exact test), Q value = 0.017

Table S5669.  Gene #517: 'RUFY1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
RUFY1 MUTATED 2 4 5 2 0 1 0
RUFY1 WILD-TYPE 58 46 44 38 63 124 99

Figure S1708.  Get High-res Image Gene #517: 'RUFY1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'RUFY1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00232 (Fisher's exact test), Q value = 0.041

Table S5670.  Gene #517: 'RUFY1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
RUFY1 MUTATED 10 0 2 2
RUFY1 WILD-TYPE 120 78 66 194

Figure S1709.  Get High-res Image Gene #517: 'RUFY1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'RUFY1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0631 (Fisher's exact test), Q value = 0.27

Table S5671.  Gene #517: 'RUFY1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
RUFY1 MUTATED 4 1 2 1 4 0 0 0 2
RUFY1 WILD-TYPE 36 61 26 79 65 48 43 28 72
'PSD MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0622 (Fisher's exact test), Q value = 0.27

Table S5672.  Gene #518: 'PSD MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
PSD MUTATED 3 1 0 0
PSD WILD-TYPE 43 57 64 43
'PSD MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.062 (Fisher's exact test), Q value = 0.27

Table S5673.  Gene #518: 'PSD MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
PSD MUTATED 3 1 0
PSD WILD-TYPE 48 82 77
'PSD MUTATION STATUS' versus 'CN_CNMF'

P value = 0.103 (Fisher's exact test), Q value = 0.36

Table S5674.  Gene #518: 'PSD MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
PSD MUTATED 11 3 2 0
PSD WILD-TYPE 167 180 99 20
'PSD MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.367 (Fisher's exact test), Q value = 0.7

Table S5675.  Gene #518: 'PSD MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
PSD MUTATED 3 2 7
PSD WILD-TYPE 84 78 93
'PSD MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.297 (Fisher's exact test), Q value = 0.63

Table S5676.  Gene #518: 'PSD MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
PSD MUTATED 1 5 7
PSD WILD-TYPE 88 155 131
'PSD MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.933 (Fisher's exact test), Q value = 1

Table S5677.  Gene #518: 'PSD MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
PSD MUTATED 7 4 2
PSD WILD-TYPE 175 129 70
'PSD MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.558 (Fisher's exact test), Q value = 0.87

Table S5678.  Gene #518: 'PSD MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
PSD MUTATED 2 5 4 6
PSD WILD-TYPE 110 91 88 180
'PSD MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0163 (Fisher's exact test), Q value = 0.13

Table S5679.  Gene #518: 'PSD MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
PSD MUTATED 2 2 6 0 1 1 5
PSD WILD-TYPE 58 48 43 40 62 124 94

Figure S1710.  Get High-res Image Gene #518: 'PSD MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'PSD MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.261 (Fisher's exact test), Q value = 0.58

Table S5680.  Gene #518: 'PSD MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
PSD MUTATED 8 1 1 6
PSD WILD-TYPE 122 77 67 190
'PSD MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.139 (Fisher's exact test), Q value = 0.41

Table S5681.  Gene #518: 'PSD MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
PSD MUTATED 2 2 1 1 7 0 1 0 2
PSD WILD-TYPE 38 60 27 79 62 48 42 28 72
'PSD MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.305 (Fisher's exact test), Q value = 0.63

Table S5682.  Gene #518: 'PSD MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
PSD MUTATED 2 0 1 2
PSD WILD-TYPE 31 31 26 17
'PSD MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.893 (Fisher's exact test), Q value = 1

Table S5683.  Gene #518: 'PSD MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
PSD MUTATED 2 0 2 1
PSD WILD-TYPE 52 10 22 21
'CDC5L MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00868 (Fisher's exact test), Q value = 0.087

Table S5684.  Gene #519: 'CDC5L MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
CDC5L MUTATED 11 1 1 0
CDC5L WILD-TYPE 167 182 100 20

Figure S1711.  Get High-res Image Gene #519: 'CDC5L MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'CDC5L MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.687 (Fisher's exact test), Q value = 0.97

Table S5685.  Gene #519: 'CDC5L MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
CDC5L MUTATED 5 3 3
CDC5L WILD-TYPE 82 77 97
'CDC5L MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.795 (Fisher's exact test), Q value = 1

Table S5686.  Gene #519: 'CDC5L MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
CDC5L MUTATED 2 4 5
CDC5L WILD-TYPE 87 156 133
'CDC5L MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S5687.  Gene #519: 'CDC5L MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
CDC5L MUTATED 5 4 2
CDC5L WILD-TYPE 177 129 70
'CDC5L MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0718 (Fisher's exact test), Q value = 0.29

Table S5688.  Gene #519: 'CDC5L MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
CDC5L MUTATED 1 3 6 3
CDC5L WILD-TYPE 111 93 86 183
'CDC5L MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.213 (Fisher's exact test), Q value = 0.52

Table S5689.  Gene #519: 'CDC5L MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
CDC5L MUTATED 1 1 3 1 4 1 2
CDC5L WILD-TYPE 59 49 46 39 59 124 97
'CDC5L MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.472 (Fisher's exact test), Q value = 0.8

Table S5690.  Gene #519: 'CDC5L MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
CDC5L MUTATED 2 4 2 5
CDC5L WILD-TYPE 128 74 66 191
'CDC5L MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.344 (Fisher's exact test), Q value = 0.67

Table S5691.  Gene #519: 'CDC5L MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
CDC5L MUTATED 3 4 0 1 2 0 1 0 2
CDC5L WILD-TYPE 37 58 28 79 67 48 42 28 72
'CDC5L MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.427 (Fisher's exact test), Q value = 0.75

Table S5692.  Gene #519: 'CDC5L MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
CDC5L MUTATED 0 1 2 1
CDC5L WILD-TYPE 33 30 25 18
'CDC5L MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.602 (Fisher's exact test), Q value = 0.9

Table S5693.  Gene #519: 'CDC5L MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
CDC5L MUTATED 2 1 1 0
CDC5L WILD-TYPE 52 9 23 22
'ARID2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.26 (Fisher's exact test), Q value = 0.58

Table S5694.  Gene #520: 'ARID2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ARID2 MUTATED 5 2 2 4
ARID2 WILD-TYPE 41 56 62 39
'ARID2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0144 (Fisher's exact test), Q value = 0.12

Table S5695.  Gene #520: 'ARID2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ARID2 MUTATED 7 5 1
ARID2 WILD-TYPE 44 78 76

Figure S1712.  Get High-res Image Gene #520: 'ARID2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'ARID2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00417 (Fisher's exact test), Q value = 0.059

Table S5696.  Gene #520: 'ARID2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ARID2 MUTATED 22 6 6 3
ARID2 WILD-TYPE 156 177 95 17

Figure S1713.  Get High-res Image Gene #520: 'ARID2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ARID2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.344 (Fisher's exact test), Q value = 0.67

Table S5697.  Gene #520: 'ARID2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ARID2 MUTATED 10 4 8
ARID2 WILD-TYPE 77 76 92
'ARID2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0929 (Fisher's exact test), Q value = 0.33

Table S5698.  Gene #520: 'ARID2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ARID2 MUTATED 8 7 15
ARID2 WILD-TYPE 81 153 123
'ARID2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.723 (Fisher's exact test), Q value = 0.99

Table S5699.  Gene #520: 'ARID2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ARID2 MUTATED 14 9 7
ARID2 WILD-TYPE 168 124 65
'ARID2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.25 (Fisher's exact test), Q value = 0.58

Table S5700.  Gene #520: 'ARID2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ARID2 MUTATED 5 7 11 13
ARID2 WILD-TYPE 107 89 81 173
'ARID2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0223 (Fisher's exact test), Q value = 0.15

Table S5701.  Gene #520: 'ARID2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ARID2 MUTATED 2 2 9 4 6 4 9
ARID2 WILD-TYPE 58 48 40 36 57 121 90

Figure S1714.  Get High-res Image Gene #520: 'ARID2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ARID2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.473 (Fisher's exact test), Q value = 0.8

Table S5702.  Gene #520: 'ARID2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ARID2 MUTATED 11 8 3 12
ARID2 WILD-TYPE 119 70 65 184
'ARID2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.445 (Fisher's exact test), Q value = 0.77

Table S5703.  Gene #520: 'ARID2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ARID2 MUTATED 2 7 2 5 9 3 3 1 2
ARID2 WILD-TYPE 38 55 26 75 60 45 40 27 72
'ARID2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.164 (Fisher's exact test), Q value = 0.46

Table S5704.  Gene #520: 'ARID2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
ARID2 MUTATED 1 2 3 4
ARID2 WILD-TYPE 32 29 24 15
'ARID2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.613 (Fisher's exact test), Q value = 0.91

Table S5705.  Gene #520: 'ARID2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
ARID2 MUTATED 7 0 1 2
ARID2 WILD-TYPE 47 10 23 20
'SCLT1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00551 (Fisher's exact test), Q value = 0.067

Table S5706.  Gene #521: 'SCLT1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
SCLT1 MUTATED 2 0 0 4
SCLT1 WILD-TYPE 44 58 64 39

Figure S1715.  Get High-res Image Gene #521: 'SCLT1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'SCLT1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0729 (Fisher's exact test), Q value = 0.29

Table S5707.  Gene #521: 'SCLT1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
SCLT1 MUTATED 4 1 1
SCLT1 WILD-TYPE 47 82 76
'SCLT1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0155 (Fisher's exact test), Q value = 0.12

Table S5708.  Gene #521: 'SCLT1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
SCLT1 MUTATED 14 3 2 0
SCLT1 WILD-TYPE 164 180 99 20

Figure S1716.  Get High-res Image Gene #521: 'SCLT1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'SCLT1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.247 (Fisher's exact test), Q value = 0.57

Table S5709.  Gene #521: 'SCLT1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
SCLT1 MUTATED 3 2 8
SCLT1 WILD-TYPE 84 78 92
'SCLT1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.249 (Fisher's exact test), Q value = 0.57

Table S5710.  Gene #521: 'SCLT1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
SCLT1 MUTATED 2 5 9
SCLT1 WILD-TYPE 87 155 129
'SCLT1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.522 (Fisher's exact test), Q value = 0.84

Table S5711.  Gene #521: 'SCLT1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
SCLT1 MUTATED 9 6 1
SCLT1 WILD-TYPE 173 127 71
'SCLT1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.199 (Fisher's exact test), Q value = 0.5

Table S5712.  Gene #521: 'SCLT1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
SCLT1 MUTATED 2 4 7 6
SCLT1 WILD-TYPE 110 92 85 180
'SCLT1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00054 (Fisher's exact test), Q value = 0.016

Table S5713.  Gene #521: 'SCLT1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
SCLT1 MUTATED 1 3 7 0 2 0 6
SCLT1 WILD-TYPE 59 47 42 40 61 125 93

Figure S1717.  Get High-res Image Gene #521: 'SCLT1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'SCLT1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.261 (Fisher's exact test), Q value = 0.59

Table S5714.  Gene #521: 'SCLT1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
SCLT1 MUTATED 7 3 0 8
SCLT1 WILD-TYPE 123 75 68 188
'SCLT1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0457 (Fisher's exact test), Q value = 0.23

Table S5715.  Gene #521: 'SCLT1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
SCLT1 MUTATED 1 2 3 3 7 0 0 1 1
SCLT1 WILD-TYPE 39 60 25 77 62 48 43 27 73

Figure S1718.  Get High-res Image Gene #521: 'SCLT1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'SCLT1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.231 (Fisher's exact test), Q value = 0.55

Table S5716.  Gene #521: 'SCLT1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
SCLT1 MUTATED 3 0 1 2
SCLT1 WILD-TYPE 30 31 26 17
'SCLT1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.284 (Fisher's exact test), Q value = 0.61

Table S5717.  Gene #521: 'SCLT1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
SCLT1 MUTATED 3 0 3 0
SCLT1 WILD-TYPE 51 10 21 22
'ZFC3H1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.283 (Fisher's exact test), Q value = 0.61

Table S5718.  Gene #522: 'ZFC3H1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ZFC3H1 MUTATED 3 1 1 3
ZFC3H1 WILD-TYPE 43 57 63 40
'ZFC3H1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.31 (Fisher's exact test), Q value = 0.64

Table S5719.  Gene #522: 'ZFC3H1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ZFC3H1 MUTATED 4 2 2
ZFC3H1 WILD-TYPE 47 81 75
'ZFC3H1 MUTATION STATUS' versus 'CN_CNMF'

P value = 8e-05 (Fisher's exact test), Q value = 0.0045

Table S5720.  Gene #522: 'ZFC3H1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ZFC3H1 MUTATED 17 2 0 1
ZFC3H1 WILD-TYPE 161 181 101 19

Figure S1719.  Get High-res Image Gene #522: 'ZFC3H1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ZFC3H1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.105 (Fisher's exact test), Q value = 0.36

Table S5721.  Gene #522: 'ZFC3H1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ZFC3H1 MUTATED 4 1 8
ZFC3H1 WILD-TYPE 83 79 92
'ZFC3H1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.679 (Fisher's exact test), Q value = 0.96

Table S5722.  Gene #522: 'ZFC3H1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ZFC3H1 MUTATED 3 7 8
ZFC3H1 WILD-TYPE 86 153 130
'ZFC3H1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S5723.  Gene #522: 'ZFC3H1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ZFC3H1 MUTATED 9 6 3
ZFC3H1 WILD-TYPE 173 127 69
'ZFC3H1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.098 (Fisher's exact test), Q value = 0.34

Table S5724.  Gene #522: 'ZFC3H1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ZFC3H1 MUTATED 1 7 5 8
ZFC3H1 WILD-TYPE 111 89 87 178
'ZFC3H1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00624 (Fisher's exact test), Q value = 0.072

Table S5725.  Gene #522: 'ZFC3H1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ZFC3H1 MUTATED 2 1 8 1 1 2 6
ZFC3H1 WILD-TYPE 58 49 41 39 62 123 93

Figure S1720.  Get High-res Image Gene #522: 'ZFC3H1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ZFC3H1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.412 (Fisher's exact test), Q value = 0.74

Table S5726.  Gene #522: 'ZFC3H1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ZFC3H1 MUTATED 8 2 1 10
ZFC3H1 WILD-TYPE 122 76 67 186
'ZFC3H1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0015 (Fisher's exact test), Q value = 0.032

Table S5727.  Gene #522: 'ZFC3H1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ZFC3H1 MUTATED 2 4 2 0 10 1 1 0 1
ZFC3H1 WILD-TYPE 38 58 26 80 59 47 42 28 73

Figure S1721.  Get High-res Image Gene #522: 'ZFC3H1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'ZFC3H1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0138 (Fisher's exact test), Q value = 0.12

Table S5728.  Gene #522: 'ZFC3H1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
ZFC3H1 MUTATED 0 1 0 3
ZFC3H1 WILD-TYPE 33 30 27 16

Figure S1722.  Get High-res Image Gene #522: 'ZFC3H1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'ZFC3H1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.869 (Fisher's exact test), Q value = 1

Table S5729.  Gene #522: 'ZFC3H1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
ZFC3H1 MUTATED 3 0 1 0
ZFC3H1 WILD-TYPE 51 10 23 22
'OR2M3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.136 (Fisher's exact test), Q value = 0.41

Table S5730.  Gene #523: 'OR2M3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
OR2M3 MUTATED 9 4 2 2
OR2M3 WILD-TYPE 169 179 99 18
'OR2M3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.16 (Fisher's exact test), Q value = 0.45

Table S5731.  Gene #523: 'OR2M3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
OR2M3 MUTATED 8 2 4
OR2M3 WILD-TYPE 79 78 96
'OR2M3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00507 (Fisher's exact test), Q value = 0.064

Table S5732.  Gene #523: 'OR2M3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
OR2M3 MUTATED 1 2 11
OR2M3 WILD-TYPE 88 158 127

Figure S1723.  Get High-res Image Gene #523: 'OR2M3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'OR2M3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.147 (Fisher's exact test), Q value = 0.43

Table S5733.  Gene #523: 'OR2M3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
OR2M3 MUTATED 9 5 0
OR2M3 WILD-TYPE 173 128 72
'OR2M3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0357 (Fisher's exact test), Q value = 0.2

Table S5734.  Gene #523: 'OR2M3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
OR2M3 MUTATED 3 3 8 3
OR2M3 WILD-TYPE 109 93 84 183

Figure S1724.  Get High-res Image Gene #523: 'OR2M3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'OR2M3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.019 (Fisher's exact test), Q value = 0.14

Table S5735.  Gene #523: 'OR2M3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
OR2M3 MUTATED 3 2 4 2 4 0 2
OR2M3 WILD-TYPE 57 48 45 38 59 125 97

Figure S1725.  Get High-res Image Gene #523: 'OR2M3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'OR2M3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.473 (Fisher's exact test), Q value = 0.8

Table S5736.  Gene #523: 'OR2M3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
OR2M3 MUTATED 5 5 2 5
OR2M3 WILD-TYPE 125 73 66 191
'OR2M3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0637 (Fisher's exact test), Q value = 0.27

Table S5737.  Gene #523: 'OR2M3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
OR2M3 MUTATED 3 4 1 0 4 0 3 1 1
OR2M3 WILD-TYPE 37 58 27 80 65 48 40 27 73
'OR2M3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.359 (Fisher's exact test), Q value = 0.69

Table S5738.  Gene #523: 'OR2M3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
OR2M3 MUTATED 1 1 0 2
OR2M3 WILD-TYPE 32 30 27 17
'OR2M3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.768 (Fisher's exact test), Q value = 1

Table S5739.  Gene #523: 'OR2M3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
OR2M3 MUTATED 3 0 0 1
OR2M3 WILD-TYPE 51 10 24 21
'RNF145 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0307 (Fisher's exact test), Q value = 0.18

Table S5740.  Gene #524: 'RNF145 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
RNF145 MUTATED 12 2 3 0
RNF145 WILD-TYPE 166 181 98 20

Figure S1726.  Get High-res Image Gene #524: 'RNF145 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'RNF145 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0318 (Fisher's exact test), Q value = 0.18

Table S5741.  Gene #524: 'RNF145 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
RNF145 MUTATED 9 1 4
RNF145 WILD-TYPE 78 79 96

Figure S1727.  Get High-res Image Gene #524: 'RNF145 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'RNF145 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.49 (Fisher's exact test), Q value = 0.82

Table S5742.  Gene #524: 'RNF145 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
RNF145 MUTATED 3 5 8
RNF145 WILD-TYPE 86 155 130
'RNF145 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.521 (Fisher's exact test), Q value = 0.84

Table S5743.  Gene #524: 'RNF145 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
RNF145 MUTATED 9 6 1
RNF145 WILD-TYPE 173 127 71
'RNF145 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0482 (Fisher's exact test), Q value = 0.23

Table S5744.  Gene #524: 'RNF145 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
RNF145 MUTATED 2 3 8 4
RNF145 WILD-TYPE 110 93 84 182

Figure S1728.  Get High-res Image Gene #524: 'RNF145 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'RNF145 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00319 (Fisher's exact test), Q value = 0.051

Table S5745.  Gene #524: 'RNF145 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
RNF145 MUTATED 3 2 6 0 3 0 3
RNF145 WILD-TYPE 57 48 43 40 60 125 96

Figure S1729.  Get High-res Image Gene #524: 'RNF145 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'RNF145 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.371 (Fisher's exact test), Q value = 0.7

Table S5746.  Gene #524: 'RNF145 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
RNF145 MUTATED 7 4 1 5
RNF145 WILD-TYPE 123 74 67 191
'RNF145 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.173 (Fisher's exact test), Q value = 0.47

Table S5747.  Gene #524: 'RNF145 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
RNF145 MUTATED 0 6 0 3 4 0 2 0 2
RNF145 WILD-TYPE 40 56 28 77 65 48 41 28 72
'RNF145 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.129 (Fisher's exact test), Q value = 0.4

Table S5748.  Gene #524: 'RNF145 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
RNF145 MUTATED 1 3 1 4
RNF145 WILD-TYPE 32 28 26 15
'RNF145 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.912 (Fisher's exact test), Q value = 1

Table S5749.  Gene #524: 'RNF145 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
RNF145 MUTATED 5 1 2 1
RNF145 WILD-TYPE 49 9 22 21
'TMEM169 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0896 (Fisher's exact test), Q value = 0.33

Table S5750.  Gene #525: 'TMEM169 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
TMEM169 MUTATED 8 5 0 1
TMEM169 WILD-TYPE 170 178 101 19
'TMEM169 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.4 (Fisher's exact test), Q value = 0.73

Table S5751.  Gene #525: 'TMEM169 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
TMEM169 MUTATED 4 2 7
TMEM169 WILD-TYPE 83 78 93
'TMEM169 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.628 (Fisher's exact test), Q value = 0.92

Table S5752.  Gene #525: 'TMEM169 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
TMEM169 MUTATED 4 4 5
TMEM169 WILD-TYPE 85 156 133
'TMEM169 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.81 (Fisher's exact test), Q value = 1

Table S5753.  Gene #525: 'TMEM169 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
TMEM169 MUTATED 5 5 3
TMEM169 WILD-TYPE 177 128 69
'TMEM169 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.149 (Fisher's exact test), Q value = 0.43

Table S5754.  Gene #525: 'TMEM169 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
TMEM169 MUTATED 3 5 4 2
TMEM169 WILD-TYPE 109 91 88 184
'TMEM169 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00738 (Fisher's exact test), Q value = 0.08

Table S5755.  Gene #525: 'TMEM169 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
TMEM169 MUTATED 0 5 3 2 2 1 1
TMEM169 WILD-TYPE 60 45 46 38 61 124 98

Figure S1730.  Get High-res Image Gene #525: 'TMEM169 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'TMEM169 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0209 (Fisher's exact test), Q value = 0.15

Table S5756.  Gene #525: 'TMEM169 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
TMEM169 MUTATED 9 2 1 2
TMEM169 WILD-TYPE 121 76 67 194

Figure S1731.  Get High-res Image Gene #525: 'TMEM169 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'TMEM169 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0242 (Fisher's exact test), Q value = 0.16

Table S5757.  Gene #525: 'TMEM169 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
TMEM169 MUTATED 6 2 0 1 2 0 1 0 2
TMEM169 WILD-TYPE 34 60 28 79 67 48 42 28 72

Figure S1732.  Get High-res Image Gene #525: 'TMEM169 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'TMEM169 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.326 (Fisher's exact test), Q value = 0.66

Table S5758.  Gene #525: 'TMEM169 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
TMEM169 MUTATED 1 2 1 3
TMEM169 WILD-TYPE 32 29 26 16
'TMEM169 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.731 (Fisher's exact test), Q value = 1

Table S5759.  Gene #525: 'TMEM169 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
TMEM169 MUTATED 3 1 2 1
TMEM169 WILD-TYPE 51 9 22 21
'NOX5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.179 (Fisher's exact test), Q value = 0.48

Table S5760.  Gene #526: 'NOX5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
NOX5 MUTATED 4 0 1 0
NOX5 WILD-TYPE 174 183 100 20
'NOX5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.203 (Fisher's exact test), Q value = 0.51

Table S5761.  Gene #526: 'NOX5 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
NOX5 MUTATED 3 0 1
NOX5 WILD-TYPE 84 80 99
'NOX5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.164 (Fisher's exact test), Q value = 0.46

Table S5762.  Gene #526: 'NOX5 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
NOX5 MUTATED 1 0 3
NOX5 WILD-TYPE 88 160 135
'NOX5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.402 (Fisher's exact test), Q value = 0.73

Table S5763.  Gene #526: 'NOX5 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
NOX5 MUTATED 3 0 1
NOX5 WILD-TYPE 179 133 71
'NOX5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.102 (Fisher's exact test), Q value = 0.35

Table S5764.  Gene #526: 'NOX5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
NOX5 MUTATED 0 1 3 1
NOX5 WILD-TYPE 112 95 89 185
'NOX5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.127 (Fisher's exact test), Q value = 0.4

Table S5765.  Gene #526: 'NOX5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
NOX5 MUTATED 0 0 2 1 1 0 1
NOX5 WILD-TYPE 60 50 47 39 62 125 98
'NOX5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.115 (Fisher's exact test), Q value = 0.38

Table S5766.  Gene #526: 'NOX5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
NOX5 MUTATED 1 3 0 1
NOX5 WILD-TYPE 129 75 68 195
'NOX5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.158 (Fisher's exact test), Q value = 0.45

Table S5767.  Gene #526: 'NOX5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
NOX5 MUTATED 1 3 0 0 1 0 0 0 0
NOX5 WILD-TYPE 39 59 28 80 68 48 43 28 74
'HAS2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00772 (Fisher's exact test), Q value = 0.082

Table S5768.  Gene #527: 'HAS2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
HAS2 MUTATED 0 0 0 3
HAS2 WILD-TYPE 46 58 64 40

Figure S1733.  Get High-res Image Gene #527: 'HAS2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'HAS2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.182 (Fisher's exact test), Q value = 0.48

Table S5769.  Gene #527: 'HAS2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
HAS2 MUTATED 2 0 1
HAS2 WILD-TYPE 49 83 76
'HAS2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00447 (Fisher's exact test), Q value = 0.061

Table S5770.  Gene #527: 'HAS2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
HAS2 MUTATED 9 0 1 0
HAS2 WILD-TYPE 169 183 100 20

Figure S1734.  Get High-res Image Gene #527: 'HAS2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'HAS2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00146 (Fisher's exact test), Q value = 0.031

Table S5771.  Gene #527: 'HAS2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
HAS2 MUTATED 0 0 7
HAS2 WILD-TYPE 87 80 93

Figure S1735.  Get High-res Image Gene #527: 'HAS2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'HAS2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S5772.  Gene #527: 'HAS2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
HAS2 MUTATED 2 4 3
HAS2 WILD-TYPE 87 156 135
'HAS2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.911 (Fisher's exact test), Q value = 1

Table S5773.  Gene #527: 'HAS2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
HAS2 MUTATED 4 3 2
HAS2 WILD-TYPE 178 130 70
'HAS2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0204 (Fisher's exact test), Q value = 0.14

Table S5774.  Gene #527: 'HAS2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
HAS2 MUTATED 1 6 0 3
HAS2 WILD-TYPE 111 90 92 183

Figure S1736.  Get High-res Image Gene #527: 'HAS2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'HAS2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0161 (Fisher's exact test), Q value = 0.13

Table S5775.  Gene #527: 'HAS2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
HAS2 MUTATED 2 3 3 0 0 0 2
HAS2 WILD-TYPE 58 47 46 40 63 125 97

Figure S1737.  Get High-res Image Gene #527: 'HAS2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'HAS2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S5776.  Gene #527: 'HAS2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
HAS2 MUTATED 3 1 1 4
HAS2 WILD-TYPE 127 77 67 192
'HAS2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.164 (Fisher's exact test), Q value = 0.46

Table S5777.  Gene #527: 'HAS2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
HAS2 MUTATED 2 0 0 1 4 1 1 0 0
HAS2 WILD-TYPE 38 62 28 79 65 47 42 28 74
'INSM2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00881 (Fisher's exact test), Q value = 0.087

Table S5778.  Gene #528: 'INSM2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
INSM2 MUTATED 8 0 2 1
INSM2 WILD-TYPE 170 183 99 19

Figure S1738.  Get High-res Image Gene #528: 'INSM2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'INSM2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.036 (Fisher's exact test), Q value = 0.2

Table S5779.  Gene #528: 'INSM2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
INSM2 MUTATED 3 0 7
INSM2 WILD-TYPE 84 80 93

Figure S1739.  Get High-res Image Gene #528: 'INSM2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'INSM2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.194 (Fisher's exact test), Q value = 0.5

Table S5780.  Gene #528: 'INSM2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
INSM2 MUTATED 1 2 6
INSM2 WILD-TYPE 88 158 132
'INSM2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.363 (Fisher's exact test), Q value = 0.69

Table S5781.  Gene #528: 'INSM2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
INSM2 MUTATED 6 3 0
INSM2 WILD-TYPE 176 130 72
'INSM2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00154 (Fisher's exact test), Q value = 0.032

Table S5782.  Gene #528: 'INSM2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
INSM2 MUTATED 0 5 5 1
INSM2 WILD-TYPE 112 91 87 185

Figure S1740.  Get High-res Image Gene #528: 'INSM2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'INSM2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 2e-05 (Fisher's exact test), Q value = 0.0017

Table S5783.  Gene #528: 'INSM2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
INSM2 MUTATED 1 1 8 0 1 0 0
INSM2 WILD-TYPE 59 49 41 40 62 125 99

Figure S1741.  Get High-res Image Gene #528: 'INSM2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'INSM2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0691 (Fisher's exact test), Q value = 0.28

Table S5784.  Gene #528: 'INSM2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
INSM2 MUTATED 6 3 0 2
INSM2 WILD-TYPE 124 75 68 194
'INSM2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0114 (Fisher's exact test), Q value = 0.1

Table S5785.  Gene #528: 'INSM2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
INSM2 MUTATED 1 3 0 0 6 0 1 0 0
INSM2 WILD-TYPE 39 59 28 80 63 48 42 28 74

Figure S1742.  Get High-res Image Gene #528: 'INSM2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'INSM2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0957 (Fisher's exact test), Q value = 0.34

Table S5786.  Gene #528: 'INSM2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
INSM2 MUTATED 2 0 0 2
INSM2 WILD-TYPE 31 31 27 17
'INSM2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.87 (Fisher's exact test), Q value = 1

Table S5787.  Gene #528: 'INSM2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
INSM2 MUTATED 3 0 1 0
INSM2 WILD-TYPE 51 10 23 22
'SCLY MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.273 (Fisher's exact test), Q value = 0.6

Table S5788.  Gene #529: 'SCLY MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
SCLY MUTATED 2 0 1 0
SCLY WILD-TYPE 44 58 63 43
'SCLY MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.184 (Fisher's exact test), Q value = 0.48

Table S5789.  Gene #529: 'SCLY MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
SCLY MUTATED 2 0 1
SCLY WILD-TYPE 49 83 76
'SCLY MUTATION STATUS' versus 'CN_CNMF'

P value = 0.568 (Fisher's exact test), Q value = 0.88

Table S5790.  Gene #529: 'SCLY MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
SCLY MUTATED 7 3 2 0
SCLY WILD-TYPE 171 180 99 20
'SCLY MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.256 (Fisher's exact test), Q value = 0.58

Table S5791.  Gene #529: 'SCLY MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
SCLY MUTATED 3 1 6
SCLY WILD-TYPE 84 79 94
'SCLY MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.542 (Fisher's exact test), Q value = 0.86

Table S5792.  Gene #529: 'SCLY MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
SCLY MUTATED 1 6 4
SCLY WILD-TYPE 88 154 134
'SCLY MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S5793.  Gene #529: 'SCLY MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
SCLY MUTATED 5 4 2
SCLY WILD-TYPE 177 129 70
'SCLY MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.549 (Fisher's exact test), Q value = 0.87

Table S5794.  Gene #529: 'SCLY MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
SCLY MUTATED 3 2 4 3
SCLY WILD-TYPE 109 94 88 183
'SCLY MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.05 (Fisher's exact test), Q value = 0.24

Table S5795.  Gene #529: 'SCLY MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
SCLY MUTATED 2 1 5 0 1 1 2
SCLY WILD-TYPE 58 49 44 40 62 124 97

Figure S1743.  Get High-res Image Gene #529: 'SCLY MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'SCLY MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.39 (Fisher's exact test), Q value = 0.72

Table S5796.  Gene #529: 'SCLY MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
SCLY MUTATED 6 2 1 3
SCLY WILD-TYPE 124 76 67 193
'SCLY MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.49 (Fisher's exact test), Q value = 0.82

Table S5797.  Gene #529: 'SCLY MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
SCLY MUTATED 1 4 1 2 1 1 1 1 0
SCLY WILD-TYPE 39 58 27 78 68 47 42 27 74
'SCLY MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0602 (Fisher's exact test), Q value = 0.27

Table S5798.  Gene #529: 'SCLY MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
SCLY MUTATED 0 0 1 2
SCLY WILD-TYPE 33 31 26 17
'SCLY MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.45 (Fisher's exact test), Q value = 0.78

Table S5799.  Gene #529: 'SCLY MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
SCLY MUTATED 1 0 2 0
SCLY WILD-TYPE 53 10 22 22
'CDK17 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00161 (Fisher's exact test), Q value = 0.033

Table S5800.  Gene #530: 'CDK17 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
CDK17 MUTATED 0 0 0 4
CDK17 WILD-TYPE 46 58 64 39

Figure S1744.  Get High-res Image Gene #530: 'CDK17 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'CDK17 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.554 (Fisher's exact test), Q value = 0.87

Table S5801.  Gene #530: 'CDK17 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
CDK17 MUTATED 2 1 1
CDK17 WILD-TYPE 49 82 76
'CDK17 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.03 (Fisher's exact test), Q value = 0.18

Table S5802.  Gene #530: 'CDK17 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
CDK17 MUTATED 9 2 0 0
CDK17 WILD-TYPE 169 181 101 20

Figure S1745.  Get High-res Image Gene #530: 'CDK17 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'CDK17 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.635 (Fisher's exact test), Q value = 0.93

Table S5803.  Gene #530: 'CDK17 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
CDK17 MUTATED 2 1 4
CDK17 WILD-TYPE 85 79 96
'CDK17 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.733 (Fisher's exact test), Q value = 1

Table S5804.  Gene #530: 'CDK17 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
CDK17 MUTATED 1 3 4
CDK17 WILD-TYPE 88 157 134
'CDK17 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.51 (Fisher's exact test), Q value = 0.83

Table S5805.  Gene #530: 'CDK17 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
CDK17 MUTATED 4 4 0
CDK17 WILD-TYPE 178 129 72
'CDK17 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.498 (Fisher's exact test), Q value = 0.82

Table S5806.  Gene #530: 'CDK17 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
CDK17 MUTATED 2 4 1 3
CDK17 WILD-TYPE 110 92 91 183
'CDK17 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0105 (Fisher's exact test), Q value = 0.098

Table S5807.  Gene #530: 'CDK17 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
CDK17 MUTATED 0 3 3 1 0 0 3
CDK17 WILD-TYPE 60 47 46 39 63 125 96

Figure S1746.  Get High-res Image Gene #530: 'CDK17 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CDK17 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.76 (Fisher's exact test), Q value = 1

Table S5808.  Gene #530: 'CDK17 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
CDK17 MUTATED 4 2 1 3
CDK17 WILD-TYPE 126 76 67 193
'CDK17 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.773 (Fisher's exact test), Q value = 1

Table S5809.  Gene #530: 'CDK17 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
CDK17 MUTATED 1 1 1 1 2 0 2 1 1
CDK17 WILD-TYPE 39 61 27 79 67 48 41 27 73
'CDK17 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.135 (Fisher's exact test), Q value = 0.41

Table S5810.  Gene #530: 'CDK17 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
CDK17 MUTATED 1 0 0 2
CDK17 WILD-TYPE 32 31 27 17
'CDK17 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S5811.  Gene #530: 'CDK17 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
CDK17 MUTATED 2 0 1 0
CDK17 WILD-TYPE 52 10 23 22
'GOLPH3L MUTATION STATUS' versus 'CN_CNMF'

P value = 0.907 (Fisher's exact test), Q value = 1

Table S5812.  Gene #531: 'GOLPH3L MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
GOLPH3L MUTATED 3 2 1 0
GOLPH3L WILD-TYPE 175 181 100 20
'GOLPH3L MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S5813.  Gene #531: 'GOLPH3L MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
GOLPH3L MUTATED 1 1 2
GOLPH3L WILD-TYPE 86 79 98
'GOLPH3L MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.769 (Fisher's exact test), Q value = 1

Table S5814.  Gene #531: 'GOLPH3L MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
GOLPH3L MUTATED 2 2 2
GOLPH3L WILD-TYPE 87 158 136
'GOLPH3L MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.578 (Fisher's exact test), Q value = 0.88

Table S5815.  Gene #531: 'GOLPH3L MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
GOLPH3L MUTATED 3 3 0
GOLPH3L WILD-TYPE 179 130 72
'GOLPH3L MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.312 (Fisher's exact test), Q value = 0.64

Table S5816.  Gene #531: 'GOLPH3L MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
GOLPH3L MUTATED 1 3 0 2
GOLPH3L WILD-TYPE 111 93 92 184
'GOLPH3L MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0875 (Fisher's exact test), Q value = 0.32

Table S5817.  Gene #531: 'GOLPH3L MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
GOLPH3L MUTATED 1 3 0 0 1 1 0
GOLPH3L WILD-TYPE 59 47 49 40 62 124 99
'GOLPH3L MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S5818.  Gene #531: 'GOLPH3L MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
GOLPH3L MUTATED 1 1 1 3
GOLPH3L WILD-TYPE 129 77 67 193
'GOLPH3L MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.987 (Fisher's exact test), Q value = 1

Table S5819.  Gene #531: 'GOLPH3L MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
GOLPH3L MUTATED 1 1 0 1 1 0 1 0 1
GOLPH3L WILD-TYPE 39 61 28 79 68 48 42 28 73
'GGTLC2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.718 (Fisher's exact test), Q value = 0.99

Table S5820.  Gene #532: 'GGTLC2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
GGTLC2 MUTATED 4 2 1 0
GGTLC2 WILD-TYPE 174 181 100 20
'GGTLC2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0263 (Fisher's exact test), Q value = 0.16

Table S5821.  Gene #532: 'GGTLC2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
GGTLC2 MUTATED 1 0 6
GGTLC2 WILD-TYPE 86 80 94

Figure S1747.  Get High-res Image Gene #532: 'GGTLC2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'GGTLC2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.239 (Fisher's exact test), Q value = 0.56

Table S5822.  Gene #532: 'GGTLC2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
GGTLC2 MUTATED 0 2 4
GGTLC2 WILD-TYPE 89 158 134
'GGTLC2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.577 (Fisher's exact test), Q value = 0.88

Table S5823.  Gene #532: 'GGTLC2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
GGTLC2 MUTATED 3 3 0
GGTLC2 WILD-TYPE 179 130 72
'GGTLC2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00516 (Fisher's exact test), Q value = 0.065

Table S5824.  Gene #532: 'GGTLC2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
GGTLC2 MUTATED 1 5 1 0
GGTLC2 WILD-TYPE 111 91 91 186

Figure S1748.  Get High-res Image Gene #532: 'GGTLC2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'GGTLC2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00649 (Fisher's exact test), Q value = 0.074

Table S5825.  Gene #532: 'GGTLC2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
GGTLC2 MUTATED 1 2 3 1 0 0 0
GGTLC2 WILD-TYPE 59 48 46 39 63 125 99

Figure S1749.  Get High-res Image Gene #532: 'GGTLC2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'GGTLC2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.351 (Fisher's exact test), Q value = 0.68

Table S5826.  Gene #532: 'GGTLC2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
GGTLC2 MUTATED 4 0 1 2
GGTLC2 WILD-TYPE 126 78 67 194
'GGTLC2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.014 (Fisher's exact test), Q value = 0.12

Table S5827.  Gene #532: 'GGTLC2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
GGTLC2 MUTATED 3 0 0 0 2 0 2 0 0
GGTLC2 WILD-TYPE 37 62 28 80 67 48 41 28 74

Figure S1750.  Get High-res Image Gene #532: 'GGTLC2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'SYNCRIP MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.039 (Fisher's exact test), Q value = 0.21

Table S5828.  Gene #533: 'SYNCRIP MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
SYNCRIP MUTATED 0 1 0 3
SYNCRIP WILD-TYPE 46 57 64 40

Figure S1751.  Get High-res Image Gene #533: 'SYNCRIP MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'SYNCRIP MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.68 (Fisher's exact test), Q value = 0.96

Table S5829.  Gene #533: 'SYNCRIP MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
SYNCRIP MUTATED 0 2 2
SYNCRIP WILD-TYPE 51 81 75
'SYNCRIP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.288 (Fisher's exact test), Q value = 0.62

Table S5830.  Gene #533: 'SYNCRIP MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
SYNCRIP MUTATED 8 3 1 0
SYNCRIP WILD-TYPE 170 180 100 20
'SYNCRIP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0793 (Fisher's exact test), Q value = 0.3

Table S5831.  Gene #533: 'SYNCRIP MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
SYNCRIP MUTATED 5 0 3
SYNCRIP WILD-TYPE 82 80 97
'SYNCRIP MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.544 (Fisher's exact test), Q value = 0.86

Table S5832.  Gene #533: 'SYNCRIP MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
SYNCRIP MUTATED 1 6 4
SYNCRIP WILD-TYPE 88 154 134
'SYNCRIP MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.334 (Fisher's exact test), Q value = 0.66

Table S5833.  Gene #533: 'SYNCRIP MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
SYNCRIP MUTATED 3 6 2
SYNCRIP WILD-TYPE 179 127 70
'SYNCRIP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.424 (Fisher's exact test), Q value = 0.75

Table S5834.  Gene #533: 'SYNCRIP MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
SYNCRIP MUTATED 1 3 4 4
SYNCRIP WILD-TYPE 111 93 88 182
'SYNCRIP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.393 (Fisher's exact test), Q value = 0.72

Table S5835.  Gene #533: 'SYNCRIP MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
SYNCRIP MUTATED 2 2 2 0 3 1 2
SYNCRIP WILD-TYPE 58 48 47 40 60 124 97
'SYNCRIP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.211 (Fisher's exact test), Q value = 0.52

Table S5836.  Gene #533: 'SYNCRIP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
SYNCRIP MUTATED 5 3 0 3
SYNCRIP WILD-TYPE 125 75 68 193
'SYNCRIP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.371 (Fisher's exact test), Q value = 0.7

Table S5837.  Gene #533: 'SYNCRIP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
SYNCRIP MUTATED 1 3 2 2 2 1 0 0 0
SYNCRIP WILD-TYPE 39 59 26 78 67 47 43 28 74
'SYNCRIP MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0852 (Fisher's exact test), Q value = 0.32

Table S5838.  Gene #533: 'SYNCRIP MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
SYNCRIP MUTATED 0 1 0 2
SYNCRIP WILD-TYPE 33 30 27 17
'SYNCRIP MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.84 (Fisher's exact test), Q value = 1

Table S5839.  Gene #533: 'SYNCRIP MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
SYNCRIP MUTATED 2 0 0 1
SYNCRIP WILD-TYPE 52 10 24 21
'IFITM3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.757 (Fisher's exact test), Q value = 1

Table S5840.  Gene #534: 'IFITM3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
IFITM3 MUTATED 4 2 2 0
IFITM3 WILD-TYPE 174 181 99 20
'IFITM3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.283 (Fisher's exact test), Q value = 0.61

Table S5841.  Gene #534: 'IFITM3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
IFITM3 MUTATED 4 3 1
IFITM3 WILD-TYPE 83 77 99
'IFITM3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.142 (Fisher's exact test), Q value = 0.42

Table S5842.  Gene #534: 'IFITM3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
IFITM3 MUTATED 0 2 5
IFITM3 WILD-TYPE 89 158 133
'IFITM3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.188 (Fisher's exact test), Q value = 0.49

Table S5843.  Gene #534: 'IFITM3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
IFITM3 MUTATED 6 1 0
IFITM3 WILD-TYPE 176 132 72
'IFITM3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0324 (Fisher's exact test), Q value = 0.18

Table S5844.  Gene #534: 'IFITM3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
IFITM3 MUTATED 2 3 3 0
IFITM3 WILD-TYPE 110 93 89 186

Figure S1752.  Get High-res Image Gene #534: 'IFITM3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'IFITM3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0382 (Fisher's exact test), Q value = 0.2

Table S5845.  Gene #534: 'IFITM3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
IFITM3 MUTATED 2 1 1 2 2 0 0
IFITM3 WILD-TYPE 58 49 48 38 61 125 99

Figure S1753.  Get High-res Image Gene #534: 'IFITM3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'IFITM3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00936 (Fisher's exact test), Q value = 0.091

Table S5846.  Gene #534: 'IFITM3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
IFITM3 MUTATED 6 1 1 0
IFITM3 WILD-TYPE 124 77 67 196

Figure S1754.  Get High-res Image Gene #534: 'IFITM3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'IFITM3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0272 (Fisher's exact test), Q value = 0.17

Table S5847.  Gene #534: 'IFITM3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
IFITM3 MUTATED 4 1 0 1 0 1 1 0 0
IFITM3 WILD-TYPE 36 61 28 79 69 47 42 28 74

Figure S1755.  Get High-res Image Gene #534: 'IFITM3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'SMG1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00138 (Fisher's exact test), Q value = 0.03

Table S5848.  Gene #535: 'SMG1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
SMG1 MUTATED 2 0 0 5
SMG1 WILD-TYPE 44 58 64 38

Figure S1756.  Get High-res Image Gene #535: 'SMG1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'SMG1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.104 (Fisher's exact test), Q value = 0.36

Table S5849.  Gene #535: 'SMG1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
SMG1 MUTATED 4 1 2
SMG1 WILD-TYPE 47 82 75
'SMG1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00559 (Fisher's exact test), Q value = 0.068

Table S5850.  Gene #535: 'SMG1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
SMG1 MUTATED 19 5 3 0
SMG1 WILD-TYPE 159 178 98 20

Figure S1757.  Get High-res Image Gene #535: 'SMG1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'SMG1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0207 (Fisher's exact test), Q value = 0.15

Table S5851.  Gene #535: 'SMG1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
SMG1 MUTATED 10 1 8
SMG1 WILD-TYPE 77 79 92

Figure S1758.  Get High-res Image Gene #535: 'SMG1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'SMG1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.495 (Fisher's exact test), Q value = 0.82

Table S5852.  Gene #535: 'SMG1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
SMG1 MUTATED 3 10 10
SMG1 WILD-TYPE 86 150 128
'SMG1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.229 (Fisher's exact test), Q value = 0.55

Table S5853.  Gene #535: 'SMG1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
SMG1 MUTATED 7 10 6
SMG1 WILD-TYPE 175 123 66
'SMG1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.531 (Fisher's exact test), Q value = 0.85

Table S5854.  Gene #535: 'SMG1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
SMG1 MUTATED 5 7 7 8
SMG1 WILD-TYPE 107 89 85 178
'SMG1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00382 (Fisher's exact test), Q value = 0.056

Table S5855.  Gene #535: 'SMG1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
SMG1 MUTATED 5 2 6 2 4 0 8
SMG1 WILD-TYPE 55 48 43 38 59 125 91

Figure S1759.  Get High-res Image Gene #535: 'SMG1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'SMG1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.542 (Fisher's exact test), Q value = 0.86

Table S5856.  Gene #535: 'SMG1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
SMG1 MUTATED 10 4 2 9
SMG1 WILD-TYPE 120 74 66 187
'SMG1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.067 (Fisher's exact test), Q value = 0.28

Table S5857.  Gene #535: 'SMG1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
SMG1 MUTATED 3 3 1 3 9 3 2 1 0
SMG1 WILD-TYPE 37 59 27 77 60 45 41 27 74
'SMG1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.118 (Fisher's exact test), Q value = 0.38

Table S5858.  Gene #535: 'SMG1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
SMG1 MUTATED 2 1 0 3
SMG1 WILD-TYPE 31 30 27 16
'SMG1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.726 (Fisher's exact test), Q value = 0.99

Table S5859.  Gene #535: 'SMG1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
SMG1 MUTATED 2 0 2 2
SMG1 WILD-TYPE 52 10 22 20
'RBL2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00307 (Fisher's exact test), Q value = 0.05

Table S5860.  Gene #536: 'RBL2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
RBL2 MUTATED 4 0 0 4
RBL2 WILD-TYPE 42 58 64 39

Figure S1760.  Get High-res Image Gene #536: 'RBL2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'RBL2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00355 (Fisher's exact test), Q value = 0.054

Table S5861.  Gene #536: 'RBL2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
RBL2 MUTATED 6 1 1
RBL2 WILD-TYPE 45 82 76

Figure S1761.  Get High-res Image Gene #536: 'RBL2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'RBL2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00863 (Fisher's exact test), Q value = 0.087

Table S5862.  Gene #536: 'RBL2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
RBL2 MUTATED 16 5 1 1
RBL2 WILD-TYPE 162 178 100 19

Figure S1762.  Get High-res Image Gene #536: 'RBL2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'RBL2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00794 (Fisher's exact test), Q value = 0.083

Table S5863.  Gene #536: 'RBL2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
RBL2 MUTATED 5 0 10
RBL2 WILD-TYPE 82 80 90

Figure S1763.  Get High-res Image Gene #536: 'RBL2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'RBL2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.271 (Fisher's exact test), Q value = 0.6

Table S5864.  Gene #536: 'RBL2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
RBL2 MUTATED 2 8 10
RBL2 WILD-TYPE 87 152 128
'RBL2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.912 (Fisher's exact test), Q value = 1

Table S5865.  Gene #536: 'RBL2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
RBL2 MUTATED 10 6 4
RBL2 WILD-TYPE 172 127 68
'RBL2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.238 (Fisher's exact test), Q value = 0.56

Table S5866.  Gene #536: 'RBL2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
RBL2 MUTATED 2 5 7 8
RBL2 WILD-TYPE 110 91 85 178
'RBL2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00233 (Fisher's exact test), Q value = 0.042

Table S5867.  Gene #536: 'RBL2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
RBL2 MUTATED 3 1 6 2 2 0 8
RBL2 WILD-TYPE 57 49 43 38 61 125 91

Figure S1764.  Get High-res Image Gene #536: 'RBL2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'RBL2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.177 (Fisher's exact test), Q value = 0.48

Table S5868.  Gene #536: 'RBL2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
RBL2 MUTATED 7 5 0 10
RBL2 WILD-TYPE 123 73 68 186
'RBL2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00568 (Fisher's exact test), Q value = 0.068

Table S5869.  Gene #536: 'RBL2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
RBL2 MUTATED 1 7 4 2 6 0 0 0 2
RBL2 WILD-TYPE 39 55 24 78 63 48 43 28 72

Figure S1765.  Get High-res Image Gene #536: 'RBL2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'RBL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.27 (Fisher's exact test), Q value = 0.59

Table S5870.  Gene #536: 'RBL2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
RBL2 MUTATED 1 0 1 2
RBL2 WILD-TYPE 32 31 26 17
'RBL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.219 (Fisher's exact test), Q value = 0.53

Table S5871.  Gene #536: 'RBL2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
RBL2 MUTATED 3 1 0 0
RBL2 WILD-TYPE 51 9 24 22
'CASC1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00855 (Fisher's exact test), Q value = 0.086

Table S5872.  Gene #537: 'CASC1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
CASC1 MUTATED 3 0 0 3
CASC1 WILD-TYPE 43 58 64 40

Figure S1766.  Get High-res Image Gene #537: 'CASC1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'CASC1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.578 (Fisher's exact test), Q value = 0.88

Table S5873.  Gene #537: 'CASC1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
CASC1 MUTATED 2 1 3
CASC1 WILD-TYPE 49 82 74
'CASC1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0351 (Fisher's exact test), Q value = 0.19

Table S5874.  Gene #537: 'CASC1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
CASC1 MUTATED 9 1 3 1
CASC1 WILD-TYPE 169 182 98 19

Figure S1767.  Get High-res Image Gene #537: 'CASC1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'CASC1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S5875.  Gene #537: 'CASC1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
CASC1 MUTATED 3 2 3
CASC1 WILD-TYPE 84 78 97
'CASC1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.919 (Fisher's exact test), Q value = 1

Table S5876.  Gene #537: 'CASC1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
CASC1 MUTATED 2 5 3
CASC1 WILD-TYPE 87 155 135
'CASC1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.841 (Fisher's exact test), Q value = 1

Table S5877.  Gene #537: 'CASC1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
CASC1 MUTATED 4 4 2
CASC1 WILD-TYPE 178 129 70
'CASC1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.636 (Fisher's exact test), Q value = 0.93

Table S5878.  Gene #537: 'CASC1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
CASC1 MUTATED 3 4 1 6
CASC1 WILD-TYPE 109 92 91 180
'CASC1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.128 (Fisher's exact test), Q value = 0.4

Table S5879.  Gene #537: 'CASC1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
CASC1 MUTATED 2 1 2 1 3 0 5
CASC1 WILD-TYPE 58 49 47 39 60 125 94
'CASC1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.888 (Fisher's exact test), Q value = 1

Table S5880.  Gene #537: 'CASC1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
CASC1 MUTATED 4 3 1 6
CASC1 WILD-TYPE 126 75 67 190
'CASC1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.259 (Fisher's exact test), Q value = 0.58

Table S5881.  Gene #537: 'CASC1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
CASC1 MUTATED 1 3 2 1 4 2 1 0 0
CASC1 WILD-TYPE 39 59 26 79 65 46 42 28 74
'LNX2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0038 (Fisher's exact test), Q value = 0.056

Table S5882.  Gene #538: 'LNX2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
LNX2 MUTATED 3 0 0 4
LNX2 WILD-TYPE 43 58 64 39

Figure S1768.  Get High-res Image Gene #538: 'LNX2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'LNX2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00444 (Fisher's exact test), Q value = 0.061

Table S5883.  Gene #538: 'LNX2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
LNX2 MUTATED 5 0 2
LNX2 WILD-TYPE 46 83 75

Figure S1769.  Get High-res Image Gene #538: 'LNX2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'LNX2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.142 (Fisher's exact test), Q value = 0.42

Table S5884.  Gene #538: 'LNX2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
LNX2 MUTATED 11 4 2 1
LNX2 WILD-TYPE 167 179 99 19
'LNX2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.511 (Fisher's exact test), Q value = 0.83

Table S5885.  Gene #538: 'LNX2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
LNX2 MUTATED 4 4 2
LNX2 WILD-TYPE 83 76 98
'LNX2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.65 (Fisher's exact test), Q value = 0.94

Table S5886.  Gene #538: 'LNX2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
LNX2 MUTATED 2 8 6
LNX2 WILD-TYPE 87 152 132
'LNX2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.75 (Fisher's exact test), Q value = 1

Table S5887.  Gene #538: 'LNX2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
LNX2 MUTATED 7 7 2
LNX2 WILD-TYPE 175 126 70
'LNX2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.834 (Fisher's exact test), Q value = 1

Table S5888.  Gene #538: 'LNX2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
LNX2 MUTATED 4 2 4 8
LNX2 WILD-TYPE 108 94 88 178
'LNX2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00651 (Fisher's exact test), Q value = 0.074

Table S5889.  Gene #538: 'LNX2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
LNX2 MUTATED 4 1 4 0 2 0 7
LNX2 WILD-TYPE 56 49 45 40 61 125 92

Figure S1770.  Get High-res Image Gene #538: 'LNX2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'LNX2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.689 (Fisher's exact test), Q value = 0.97

Table S5890.  Gene #538: 'LNX2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
LNX2 MUTATED 5 4 2 5
LNX2 WILD-TYPE 125 74 66 191
'LNX2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.388 (Fisher's exact test), Q value = 0.72

Table S5891.  Gene #538: 'LNX2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
LNX2 MUTATED 1 3 0 2 4 2 2 2 0
LNX2 WILD-TYPE 39 59 28 78 65 46 41 26 74
'N4BP2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0545 (Fisher's exact test), Q value = 0.25

Table S5892.  Gene #539: 'N4BP2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
N4BP2 MUTATED 4 0 1 2
N4BP2 WILD-TYPE 42 58 63 41
'N4BP2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.546 (Fisher's exact test), Q value = 0.86

Table S5893.  Gene #539: 'N4BP2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
N4BP2 MUTATED 3 2 2
N4BP2 WILD-TYPE 48 81 75
'N4BP2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00014 (Fisher's exact test), Q value = 0.0066

Table S5894.  Gene #539: 'N4BP2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
N4BP2 MUTATED 21 4 1 1
N4BP2 WILD-TYPE 157 179 100 19

Figure S1771.  Get High-res Image Gene #539: 'N4BP2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'N4BP2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.212 (Fisher's exact test), Q value = 0.52

Table S5895.  Gene #539: 'N4BP2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
N4BP2 MUTATED 7 3 11
N4BP2 WILD-TYPE 80 77 89
'N4BP2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0362 (Fisher's exact test), Q value = 0.2

Table S5896.  Gene #539: 'N4BP2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
N4BP2 MUTATED 1 12 12
N4BP2 WILD-TYPE 88 148 126

Figure S1772.  Get High-res Image Gene #539: 'N4BP2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'N4BP2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.235 (Fisher's exact test), Q value = 0.56

Table S5897.  Gene #539: 'N4BP2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
N4BP2 MUTATED 11 12 2
N4BP2 WILD-TYPE 171 121 70
'N4BP2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.379 (Fisher's exact test), Q value = 0.71

Table S5898.  Gene #539: 'N4BP2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
N4BP2 MUTATED 6 6 8 7
N4BP2 WILD-TYPE 106 90 84 179
'N4BP2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00851 (Fisher's exact test), Q value = 0.086

Table S5899.  Gene #539: 'N4BP2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
N4BP2 MUTATED 6 3 8 1 3 2 4
N4BP2 WILD-TYPE 54 47 41 39 60 123 95

Figure S1773.  Get High-res Image Gene #539: 'N4BP2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'N4BP2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.391 (Fisher's exact test), Q value = 0.72

Table S5900.  Gene #539: 'N4BP2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
N4BP2 MUTATED 11 4 2 9
N4BP2 WILD-TYPE 119 74 66 187
'N4BP2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.253 (Fisher's exact test), Q value = 0.58

Table S5901.  Gene #539: 'N4BP2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
N4BP2 MUTATED 1 6 2 4 6 2 4 0 1
N4BP2 WILD-TYPE 39 56 26 76 63 46 39 28 73
'N4BP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0115 (Fisher's exact test), Q value = 0.1

Table S5902.  Gene #539: 'N4BP2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
N4BP2 MUTATED 1 1 1 5
N4BP2 WILD-TYPE 32 30 26 14

Figure S1774.  Get High-res Image Gene #539: 'N4BP2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'N4BP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.95 (Fisher's exact test), Q value = 1

Table S5903.  Gene #539: 'N4BP2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
N4BP2 MUTATED 5 0 2 1
N4BP2 WILD-TYPE 49 10 22 21
'KRT14 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.46 (Fisher's exact test), Q value = 0.79

Table S5904.  Gene #540: 'KRT14 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
KRT14 MUTATED 6 2 1 0
KRT14 WILD-TYPE 172 181 100 20
'KRT14 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.819 (Fisher's exact test), Q value = 1

Table S5905.  Gene #540: 'KRT14 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
KRT14 MUTATED 2 2 4
KRT14 WILD-TYPE 85 78 96
'KRT14 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.793 (Fisher's exact test), Q value = 1

Table S5906.  Gene #540: 'KRT14 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
KRT14 MUTATED 1 4 2
KRT14 WILD-TYPE 88 156 136
'KRT14 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.14 (Fisher's exact test), Q value = 0.42

Table S5907.  Gene #540: 'KRT14 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
KRT14 MUTATED 2 5 0
KRT14 WILD-TYPE 180 128 72
'KRT14 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.161 (Fisher's exact test), Q value = 0.45

Table S5908.  Gene #540: 'KRT14 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
KRT14 MUTATED 2 4 2 1
KRT14 WILD-TYPE 110 92 90 185
'KRT14 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00163 (Fisher's exact test), Q value = 0.033

Table S5909.  Gene #540: 'KRT14 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
KRT14 MUTATED 2 2 4 1 0 0 0
KRT14 WILD-TYPE 58 48 45 39 63 125 99

Figure S1775.  Get High-res Image Gene #540: 'KRT14 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'KRT14 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.534 (Fisher's exact test), Q value = 0.85

Table S5910.  Gene #540: 'KRT14 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
KRT14 MUTATED 3 2 2 2
KRT14 WILD-TYPE 127 76 66 194
'KRT14 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.948 (Fisher's exact test), Q value = 1

Table S5911.  Gene #540: 'KRT14 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
KRT14 MUTATED 1 1 0 3 2 0 1 0 1
KRT14 WILD-TYPE 39 61 28 77 67 48 42 28 73
'LNPEP MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00491 (Fisher's exact test), Q value = 0.063

Table S5912.  Gene #541: 'LNPEP MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
LNPEP MUTATED 4 0 0 3
LNPEP WILD-TYPE 42 58 64 40

Figure S1776.  Get High-res Image Gene #541: 'LNPEP MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'LNPEP MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.124 (Fisher's exact test), Q value = 0.39

Table S5913.  Gene #541: 'LNPEP MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
LNPEP MUTATED 4 2 1
LNPEP WILD-TYPE 47 81 76
'LNPEP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00304 (Fisher's exact test), Q value = 0.049

Table S5914.  Gene #541: 'LNPEP MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
LNPEP MUTATED 15 2 2 0
LNPEP WILD-TYPE 163 181 99 20

Figure S1777.  Get High-res Image Gene #541: 'LNPEP MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'LNPEP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.532 (Fisher's exact test), Q value = 0.85

Table S5915.  Gene #541: 'LNPEP MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
LNPEP MUTATED 4 2 6
LNPEP WILD-TYPE 83 78 94
'LNPEP MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.759 (Fisher's exact test), Q value = 1

Table S5916.  Gene #541: 'LNPEP MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
LNPEP MUTATED 5 6 5
LNPEP WILD-TYPE 84 154 133
'LNPEP MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.267 (Fisher's exact test), Q value = 0.59

Table S5917.  Gene #541: 'LNPEP MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
LNPEP MUTATED 5 6 5
LNPEP WILD-TYPE 177 127 67
'LNPEP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.107 (Fisher's exact test), Q value = 0.36

Table S5918.  Gene #541: 'LNPEP MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
LNPEP MUTATED 2 8 2 7
LNPEP WILD-TYPE 110 88 90 179
'LNPEP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0429 (Fisher's exact test), Q value = 0.22

Table S5919.  Gene #541: 'LNPEP MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
LNPEP MUTATED 2 4 5 1 1 1 5
LNPEP WILD-TYPE 58 46 44 39 62 124 94

Figure S1778.  Get High-res Image Gene #541: 'LNPEP MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'LNPEP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.59 (Fisher's exact test), Q value = 0.89

Table S5920.  Gene #541: 'LNPEP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
LNPEP MUTATED 7 2 1 8
LNPEP WILD-TYPE 123 76 67 188
'LNPEP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0247 (Fisher's exact test), Q value = 0.16

Table S5921.  Gene #541: 'LNPEP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
LNPEP MUTATED 2 3 2 1 8 0 1 0 1
LNPEP WILD-TYPE 38 59 26 79 61 48 42 28 73

Figure S1779.  Get High-res Image Gene #541: 'LNPEP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'LNPEP MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 7e-04 (Fisher's exact test), Q value = 0.019

Table S5922.  Gene #541: 'LNPEP MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
LNPEP MUTATED 0 0 0 4
LNPEP WILD-TYPE 33 31 27 15

Figure S1780.  Get High-res Image Gene #541: 'LNPEP MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'LNPEP MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.669 (Fisher's exact test), Q value = 0.95

Table S5923.  Gene #541: 'LNPEP MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
LNPEP MUTATED 2 0 2 0
LNPEP WILD-TYPE 52 10 22 22
'SP110 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.648 (Fisher's exact test), Q value = 0.94

Table S5924.  Gene #542: 'SP110 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
SP110 MUTATED 3 4 2 1
SP110 WILD-TYPE 175 179 99 19
'SP110 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.764 (Fisher's exact test), Q value = 1

Table S5925.  Gene #542: 'SP110 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
SP110 MUTATED 4 2 3
SP110 WILD-TYPE 83 78 97
'SP110 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.695 (Fisher's exact test), Q value = 0.97

Table S5926.  Gene #542: 'SP110 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
SP110 MUTATED 1 5 3
SP110 WILD-TYPE 88 155 135
'SP110 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.449 (Fisher's exact test), Q value = 0.78

Table S5927.  Gene #542: 'SP110 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
SP110 MUTATED 3 3 3
SP110 WILD-TYPE 179 130 69
'SP110 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.13 (Fisher's exact test), Q value = 0.4

Table S5928.  Gene #542: 'SP110 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
SP110 MUTATED 3 4 2 1
SP110 WILD-TYPE 109 92 90 185
'SP110 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0796 (Fisher's exact test), Q value = 0.3

Table S5929.  Gene #542: 'SP110 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
SP110 MUTATED 2 1 3 1 2 0 1
SP110 WILD-TYPE 58 49 46 39 61 125 98
'SP110 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0764 (Fisher's exact test), Q value = 0.3

Table S5930.  Gene #542: 'SP110 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
SP110 MUTATED 5 3 1 1
SP110 WILD-TYPE 125 75 67 195
'SP110 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.212 (Fisher's exact test), Q value = 0.52

Table S5931.  Gene #542: 'SP110 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
SP110 MUTATED 2 3 1 0 2 1 1 0 0
SP110 WILD-TYPE 38 59 27 80 67 47 42 28 74
'C5ORF34 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0641 (Fisher's exact test), Q value = 0.27

Table S5932.  Gene #543: 'C5ORF34 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
C5ORF34 MUTATED 1 0 0 2
C5ORF34 WILD-TYPE 45 58 64 41
'C5ORF34 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.184 (Fisher's exact test), Q value = 0.48

Table S5933.  Gene #543: 'C5ORF34 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
C5ORF34 MUTATED 2 0 1
C5ORF34 WILD-TYPE 49 83 76
'C5ORF34 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.167 (Fisher's exact test), Q value = 0.46

Table S5934.  Gene #543: 'C5ORF34 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
C5ORF34 MUTATED 8 2 1 0
C5ORF34 WILD-TYPE 170 181 100 20
'C5ORF34 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.432 (Fisher's exact test), Q value = 0.76

Table S5935.  Gene #543: 'C5ORF34 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
C5ORF34 MUTATED 3 1 5
C5ORF34 WILD-TYPE 84 79 95
'C5ORF34 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0138 (Fisher's exact test), Q value = 0.12

Table S5936.  Gene #543: 'C5ORF34 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
C5ORF34 MUTATED 0 3 9
C5ORF34 WILD-TYPE 89 157 129

Figure S1781.  Get High-res Image Gene #543: 'C5ORF34 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'C5ORF34 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.105 (Fisher's exact test), Q value = 0.36

Table S5937.  Gene #543: 'C5ORF34 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
C5ORF34 MUTATED 9 3 0
C5ORF34 WILD-TYPE 173 130 72
'C5ORF34 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.231 (Fisher's exact test), Q value = 0.55

Table S5938.  Gene #543: 'C5ORF34 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
C5ORF34 MUTATED 1 4 4 3
C5ORF34 WILD-TYPE 111 92 88 183
'C5ORF34 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0107 (Fisher's exact test), Q value = 0.1

Table S5939.  Gene #543: 'C5ORF34 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
C5ORF34 MUTATED 1 2 5 1 1 0 2
C5ORF34 WILD-TYPE 59 48 44 39 62 125 97

Figure S1782.  Get High-res Image Gene #543: 'C5ORF34 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'C5ORF34 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.584 (Fisher's exact test), Q value = 0.89

Table S5940.  Gene #543: 'C5ORF34 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
C5ORF34 MUTATED 4 3 1 3
C5ORF34 WILD-TYPE 126 75 67 193
'C5ORF34 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0125 (Fisher's exact test), Q value = 0.11

Table S5941.  Gene #543: 'C5ORF34 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
C5ORF34 MUTATED 0 4 1 0 5 1 0 0 0
C5ORF34 WILD-TYPE 40 58 27 80 64 47 43 28 74

Figure S1783.  Get High-res Image Gene #543: 'C5ORF34 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'C5ORF34 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.783 (Fisher's exact test), Q value = 1

Table S5942.  Gene #543: 'C5ORF34 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
C5ORF34 MUTATED 1 0 1 1
C5ORF34 WILD-TYPE 32 31 26 18
'C5ORF34 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.14 (Fisher's exact test), Q value = 0.42

Table S5943.  Gene #543: 'C5ORF34 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
C5ORF34 MUTATED 0 0 2 1
C5ORF34 WILD-TYPE 54 10 22 21
'ADORA3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.889 (Fisher's exact test), Q value = 1

Table S5944.  Gene #544: 'ADORA3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ADORA3 MUTATED 0 1 1 1
ADORA3 WILD-TYPE 46 57 63 42
'ADORA3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.463 (Fisher's exact test), Q value = 0.79

Table S5945.  Gene #544: 'ADORA3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ADORA3 MUTATED 1 2 0
ADORA3 WILD-TYPE 50 81 77
'ADORA3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.763 (Fisher's exact test), Q value = 1

Table S5946.  Gene #544: 'ADORA3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ADORA3 MUTATED 6 6 2 1
ADORA3 WILD-TYPE 172 177 99 19
'ADORA3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.532 (Fisher's exact test), Q value = 0.85

Table S5947.  Gene #544: 'ADORA3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ADORA3 MUTATED 4 2 6
ADORA3 WILD-TYPE 83 78 94
'ADORA3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0597 (Fisher's exact test), Q value = 0.27

Table S5948.  Gene #544: 'ADORA3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ADORA3 MUTATED 6 2 6
ADORA3 WILD-TYPE 83 158 132
'ADORA3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.228 (Fisher's exact test), Q value = 0.55

Table S5949.  Gene #544: 'ADORA3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ADORA3 MUTATED 8 2 4
ADORA3 WILD-TYPE 174 131 68
'ADORA3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0511 (Fisher's exact test), Q value = 0.24

Table S5950.  Gene #544: 'ADORA3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ADORA3 MUTATED 5 2 6 2
ADORA3 WILD-TYPE 107 94 86 184
'ADORA3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0749 (Fisher's exact test), Q value = 0.29

Table S5951.  Gene #544: 'ADORA3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ADORA3 MUTATED 4 1 4 0 3 2 1
ADORA3 WILD-TYPE 56 49 45 40 60 123 98
'ADORA3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.179 (Fisher's exact test), Q value = 0.48

Table S5952.  Gene #544: 'ADORA3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ADORA3 MUTATED 6 2 4 3
ADORA3 WILD-TYPE 124 76 64 193
'ADORA3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.305 (Fisher's exact test), Q value = 0.63

Table S5953.  Gene #544: 'ADORA3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ADORA3 MUTATED 3 3 0 1 3 0 3 0 2
ADORA3 WILD-TYPE 37 59 28 79 66 48 40 28 72
'ADORA3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.356 (Fisher's exact test), Q value = 0.68

Table S5954.  Gene #544: 'ADORA3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
ADORA3 MUTATED 2 1 1 3
ADORA3 WILD-TYPE 31 30 26 16
'ADORA3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.94 (Fisher's exact test), Q value = 1

Table S5955.  Gene #544: 'ADORA3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
ADORA3 MUTATED 4 0 1 2
ADORA3 WILD-TYPE 50 10 23 20
'MAP2K4 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.27 (Fisher's exact test), Q value = 0.59

Table S5956.  Gene #545: 'MAP2K4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
MAP2K4 MUTATED 4 1 3 4
MAP2K4 WILD-TYPE 42 57 61 39
'MAP2K4 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.358 (Fisher's exact test), Q value = 0.69

Table S5957.  Gene #545: 'MAP2K4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
MAP2K4 MUTATED 5 3 4
MAP2K4 WILD-TYPE 46 80 73
'MAP2K4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0308 (Fisher's exact test), Q value = 0.18

Table S5958.  Gene #545: 'MAP2K4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
MAP2K4 MUTATED 18 9 3 3
MAP2K4 WILD-TYPE 160 174 98 17

Figure S1784.  Get High-res Image Gene #545: 'MAP2K4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'MAP2K4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00446 (Fisher's exact test), Q value = 0.061

Table S5959.  Gene #545: 'MAP2K4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
MAP2K4 MUTATED 7 1 14
MAP2K4 WILD-TYPE 80 79 86

Figure S1785.  Get High-res Image Gene #545: 'MAP2K4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'MAP2K4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.571 (Fisher's exact test), Q value = 0.88

Table S5960.  Gene #545: 'MAP2K4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
MAP2K4 MUTATED 4 13 11
MAP2K4 WILD-TYPE 85 147 127
'MAP2K4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.426 (Fisher's exact test), Q value = 0.75

Table S5961.  Gene #545: 'MAP2K4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
MAP2K4 MUTATED 10 12 6
MAP2K4 WILD-TYPE 172 121 66
'MAP2K4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0474 (Fisher's exact test), Q value = 0.23

Table S5962.  Gene #545: 'MAP2K4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
MAP2K4 MUTATED 3 11 9 11
MAP2K4 WILD-TYPE 109 85 83 175

Figure S1786.  Get High-res Image Gene #545: 'MAP2K4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'MAP2K4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0986 (Fisher's exact test), Q value = 0.34

Table S5963.  Gene #545: 'MAP2K4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
MAP2K4 MUTATED 3 4 9 3 3 5 7
MAP2K4 WILD-TYPE 57 46 40 37 60 120 92
'MAP2K4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0177 (Fisher's exact test), Q value = 0.13

Table S5964.  Gene #545: 'MAP2K4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
MAP2K4 MUTATED 14 6 0 12
MAP2K4 WILD-TYPE 116 72 68 184

Figure S1787.  Get High-res Image Gene #545: 'MAP2K4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'MAP2K4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0334 (Fisher's exact test), Q value = 0.19

Table S5965.  Gene #545: 'MAP2K4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
MAP2K4 MUTATED 6 3 3 3 9 4 1 2 1
MAP2K4 WILD-TYPE 34 59 25 77 60 44 42 26 73

Figure S1788.  Get High-res Image Gene #545: 'MAP2K4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'MAP2K4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00895 (Fisher's exact test), Q value = 0.088

Table S5966.  Gene #545: 'MAP2K4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
MAP2K4 MUTATED 4 1 0 5
MAP2K4 WILD-TYPE 29 30 27 14

Figure S1789.  Get High-res Image Gene #545: 'MAP2K4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'MAP2K4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.923 (Fisher's exact test), Q value = 1

Table S5967.  Gene #545: 'MAP2K4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
MAP2K4 MUTATED 6 1 2 1
MAP2K4 WILD-TYPE 48 9 22 21
'OVGP1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0642 (Fisher's exact test), Q value = 0.27

Table S5968.  Gene #546: 'OVGP1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
OVGP1 MUTATED 1 0 0 2
OVGP1 WILD-TYPE 45 58 64 41
'OVGP1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.184 (Fisher's exact test), Q value = 0.48

Table S5969.  Gene #546: 'OVGP1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
OVGP1 MUTATED 2 0 1
OVGP1 WILD-TYPE 49 83 76
'OVGP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.219 (Fisher's exact test), Q value = 0.53

Table S5970.  Gene #546: 'OVGP1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
OVGP1 MUTATED 10 6 1 0
OVGP1 WILD-TYPE 168 177 100 20
'OVGP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.832 (Fisher's exact test), Q value = 1

Table S5971.  Gene #546: 'OVGP1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
OVGP1 MUTATED 5 3 6
OVGP1 WILD-TYPE 82 77 94
'OVGP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.834 (Fisher's exact test), Q value = 1

Table S5972.  Gene #546: 'OVGP1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
OVGP1 MUTATED 3 7 4
OVGP1 WILD-TYPE 86 153 134
'OVGP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.823 (Fisher's exact test), Q value = 1

Table S5973.  Gene #546: 'OVGP1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
OVGP1 MUTATED 6 6 2
OVGP1 WILD-TYPE 176 127 70
'OVGP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.791 (Fisher's exact test), Q value = 1

Table S5974.  Gene #546: 'OVGP1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
OVGP1 MUTATED 5 3 4 5
OVGP1 WILD-TYPE 107 93 88 181
'OVGP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.133 (Fisher's exact test), Q value = 0.41

Table S5975.  Gene #546: 'OVGP1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
OVGP1 MUTATED 5 1 3 1 3 1 3
OVGP1 WILD-TYPE 55 49 46 39 60 124 96
'OVGP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0561 (Fisher's exact test), Q value = 0.26

Table S5976.  Gene #546: 'OVGP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
OVGP1 MUTATED 8 4 0 4
OVGP1 WILD-TYPE 122 74 68 192
'OVGP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.115 (Fisher's exact test), Q value = 0.38

Table S5977.  Gene #546: 'OVGP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
OVGP1 MUTATED 3 5 1 1 4 0 0 0 2
OVGP1 WILD-TYPE 37 57 27 79 65 48 43 28 72
'OVGP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0888 (Fisher's exact test), Q value = 0.32

Table S5978.  Gene #546: 'OVGP1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
OVGP1 MUTATED 1 1 0 3
OVGP1 WILD-TYPE 32 30 27 16
'OVGP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.523 (Fisher's exact test), Q value = 0.84

Table S5979.  Gene #546: 'OVGP1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
OVGP1 MUTATED 3 1 1 0
OVGP1 WILD-TYPE 51 9 23 22
'GOLGB1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00096 (Fisher's exact test), Q value = 0.024

Table S5980.  Gene #547: 'GOLGB1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
GOLGB1 MUTATED 3 0 1 7
GOLGB1 WILD-TYPE 43 58 63 36

Figure S1790.  Get High-res Image Gene #547: 'GOLGB1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'GOLGB1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.07 (Fisher's exact test), Q value = 0.29

Table S5981.  Gene #547: 'GOLGB1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
GOLGB1 MUTATED 6 2 3
GOLGB1 WILD-TYPE 45 81 74
'GOLGB1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00152 (Fisher's exact test), Q value = 0.032

Table S5982.  Gene #547: 'GOLGB1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
GOLGB1 MUTATED 27 7 7 1
GOLGB1 WILD-TYPE 151 176 94 19

Figure S1791.  Get High-res Image Gene #547: 'GOLGB1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'GOLGB1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.195 (Fisher's exact test), Q value = 0.5

Table S5983.  Gene #547: 'GOLGB1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
GOLGB1 MUTATED 12 5 14
GOLGB1 WILD-TYPE 75 75 86
'GOLGB1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.238 (Fisher's exact test), Q value = 0.56

Table S5984.  Gene #547: 'GOLGB1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
GOLGB1 MUTATED 7 12 18
GOLGB1 WILD-TYPE 82 148 120
'GOLGB1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.648 (Fisher's exact test), Q value = 0.94

Table S5985.  Gene #547: 'GOLGB1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
GOLGB1 MUTATED 20 12 5
GOLGB1 WILD-TYPE 162 121 67
'GOLGB1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.245 (Fisher's exact test), Q value = 0.57

Table S5986.  Gene #547: 'GOLGB1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
GOLGB1 MUTATED 8 10 12 12
GOLGB1 WILD-TYPE 104 86 80 174
'GOLGB1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00267 (Fisher's exact test), Q value = 0.045

Table S5987.  Gene #547: 'GOLGB1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
GOLGB1 MUTATED 8 8 6 1 7 2 10
GOLGB1 WILD-TYPE 52 42 43 39 56 123 89

Figure S1792.  Get High-res Image Gene #547: 'GOLGB1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'GOLGB1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.55 (Fisher's exact test), Q value = 0.87

Table S5988.  Gene #547: 'GOLGB1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
GOLGB1 MUTATED 13 8 3 17
GOLGB1 WILD-TYPE 117 70 65 179
'GOLGB1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.011 (Fisher's exact test), Q value = 0.1

Table S5989.  Gene #547: 'GOLGB1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
GOLGB1 MUTATED 5 8 4 3 11 6 2 0 2
GOLGB1 WILD-TYPE 35 54 24 77 58 42 41 28 72

Figure S1793.  Get High-res Image Gene #547: 'GOLGB1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'GOLGB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0171 (Fisher's exact test), Q value = 0.13

Table S5990.  Gene #547: 'GOLGB1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
GOLGB1 MUTATED 5 2 0 5
GOLGB1 WILD-TYPE 28 29 27 14

Figure S1794.  Get High-res Image Gene #547: 'GOLGB1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'GOLGB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.331 (Fisher's exact test), Q value = 0.66

Table S5991.  Gene #547: 'GOLGB1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
GOLGB1 MUTATED 9 0 1 2
GOLGB1 WILD-TYPE 45 10 23 20
'SYT1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.026 (Fisher's exact test), Q value = 0.16

Table S5992.  Gene #548: 'SYT1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
SYT1 MUTATED 10 3 0 0
SYT1 WILD-TYPE 168 180 101 20

Figure S1795.  Get High-res Image Gene #548: 'SYT1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'SYT1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.936 (Fisher's exact test), Q value = 1

Table S5993.  Gene #548: 'SYT1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
SYT1 MUTATED 4 3 5
SYT1 WILD-TYPE 83 77 95
'SYT1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.297 (Fisher's exact test), Q value = 0.63

Table S5994.  Gene #548: 'SYT1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
SYT1 MUTATED 1 5 7
SYT1 WILD-TYPE 88 155 131
'SYT1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.709 (Fisher's exact test), Q value = 0.98

Table S5995.  Gene #548: 'SYT1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
SYT1 MUTATED 7 5 1
SYT1 WILD-TYPE 175 128 71
'SYT1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0877 (Fisher's exact test), Q value = 0.32

Table S5996.  Gene #548: 'SYT1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
SYT1 MUTATED 3 6 2 2
SYT1 WILD-TYPE 109 90 90 184
'SYT1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00643 (Fisher's exact test), Q value = 0.074

Table S5997.  Gene #548: 'SYT1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
SYT1 MUTATED 1 5 3 1 1 0 2
SYT1 WILD-TYPE 59 45 46 39 62 125 97

Figure S1796.  Get High-res Image Gene #548: 'SYT1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'SYT1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0146 (Fisher's exact test), Q value = 0.12

Table S5998.  Gene #548: 'SYT1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
SYT1 MUTATED 9 1 1 2
SYT1 WILD-TYPE 121 77 67 194

Figure S1797.  Get High-res Image Gene #548: 'SYT1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'SYT1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.311 (Fisher's exact test), Q value = 0.64

Table S5999.  Gene #548: 'SYT1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
SYT1 MUTATED 3 2 1 2 1 0 3 0 1
SYT1 WILD-TYPE 37 60 27 78 68 48 40 28 73
'UVRAG MUTATION STATUS' versus 'CN_CNMF'

P value = 0.281 (Fisher's exact test), Q value = 0.61

Table S6000.  Gene #549: 'UVRAG MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
UVRAG MUTATED 6 2 2 1
UVRAG WILD-TYPE 172 181 99 19
'UVRAG MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.126 (Fisher's exact test), Q value = 0.39

Table S6001.  Gene #549: 'UVRAG MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
UVRAG MUTATED 6 1 2
UVRAG WILD-TYPE 81 79 98
'UVRAG MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.534 (Fisher's exact test), Q value = 0.85

Table S6002.  Gene #549: 'UVRAG MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
UVRAG MUTATED 1 5 2
UVRAG WILD-TYPE 88 155 136
'UVRAG MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S6003.  Gene #549: 'UVRAG MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
UVRAG MUTATED 4 3 1
UVRAG WILD-TYPE 178 130 71
'UVRAG MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0693 (Fisher's exact test), Q value = 0.28

Table S6004.  Gene #549: 'UVRAG MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
UVRAG MUTATED 3 0 5 3
UVRAG WILD-TYPE 109 96 87 183
'UVRAG MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.108 (Fisher's exact test), Q value = 0.36

Table S6005.  Gene #549: 'UVRAG MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
UVRAG MUTATED 2 0 1 2 4 1 1
UVRAG WILD-TYPE 58 50 48 38 59 124 98
'UVRAG MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0737 (Fisher's exact test), Q value = 0.29

Table S6006.  Gene #549: 'UVRAG MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
UVRAG MUTATED 3 5 0 3
UVRAG WILD-TYPE 127 73 68 193
'UVRAG MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.624 (Fisher's exact test), Q value = 0.92

Table S6007.  Gene #549: 'UVRAG MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
UVRAG MUTATED 1 4 0 3 1 1 0 0 1
UVRAG WILD-TYPE 39 58 28 77 68 47 43 28 73
'UVRAG MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.206 (Fisher's exact test), Q value = 0.51

Table S6008.  Gene #549: 'UVRAG MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
UVRAG MUTATED 0 2 0 1
UVRAG WILD-TYPE 33 29 27 18
'UVRAG MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.195 (Fisher's exact test), Q value = 0.5

Table S6009.  Gene #549: 'UVRAG MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
UVRAG MUTATED 1 1 0 1
UVRAG WILD-TYPE 53 9 24 21
'CLVS1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0648 (Fisher's exact test), Q value = 0.28

Table S6010.  Gene #550: 'CLVS1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
CLVS1 MUTATED 1 0 0 2
CLVS1 WILD-TYPE 45 58 64 41
'CLVS1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.183 (Fisher's exact test), Q value = 0.48

Table S6011.  Gene #550: 'CLVS1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
CLVS1 MUTATED 2 0 1
CLVS1 WILD-TYPE 49 83 76
'CLVS1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.923 (Fisher's exact test), Q value = 1

Table S6012.  Gene #550: 'CLVS1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
CLVS1 MUTATED 5 4 3 0
CLVS1 WILD-TYPE 173 179 98 20
'CLVS1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.285 (Fisher's exact test), Q value = 0.61

Table S6013.  Gene #550: 'CLVS1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
CLVS1 MUTATED 4 3 1
CLVS1 WILD-TYPE 83 77 99
'CLVS1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.845 (Fisher's exact test), Q value = 1

Table S6014.  Gene #550: 'CLVS1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
CLVS1 MUTATED 3 4 3
CLVS1 WILD-TYPE 86 156 135
'CLVS1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.581 (Fisher's exact test), Q value = 0.89

Table S6015.  Gene #550: 'CLVS1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
CLVS1 MUTATED 4 3 3
CLVS1 WILD-TYPE 178 130 69
'CLVS1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.451 (Fisher's exact test), Q value = 0.78

Table S6016.  Gene #550: 'CLVS1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
CLVS1 MUTATED 5 1 2 4
CLVS1 WILD-TYPE 107 95 90 182
'CLVS1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.152 (Fisher's exact test), Q value = 0.44

Table S6017.  Gene #550: 'CLVS1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
CLVS1 MUTATED 3 1 0 0 4 1 3
CLVS1 WILD-TYPE 57 49 49 40 59 124 96
'CLVS1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.292 (Fisher's exact test), Q value = 0.62

Table S6018.  Gene #550: 'CLVS1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
CLVS1 MUTATED 2 2 4 4
CLVS1 WILD-TYPE 128 76 64 192
'CLVS1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.603 (Fisher's exact test), Q value = 0.91

Table S6019.  Gene #550: 'CLVS1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
CLVS1 MUTATED 1 2 0 1 2 0 3 0 3
CLVS1 WILD-TYPE 39 60 28 79 67 48 40 28 71
'CLVS1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.483 (Fisher's exact test), Q value = 0.81

Table S6020.  Gene #550: 'CLVS1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
CLVS1 MUTATED 2 0 1 0
CLVS1 WILD-TYPE 31 31 26 19
'CLVS1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0175 (Fisher's exact test), Q value = 0.13

Table S6021.  Gene #550: 'CLVS1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
CLVS1 MUTATED 0 0 0 3
CLVS1 WILD-TYPE 54 10 24 19

Figure S1798.  Get High-res Image Gene #550: 'CLVS1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

'TTF1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00498 (Fisher's exact test), Q value = 0.064

Table S6022.  Gene #551: 'TTF1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
TTF1 MUTATED 10 1 0 0
TTF1 WILD-TYPE 168 182 101 20

Figure S1799.  Get High-res Image Gene #551: 'TTF1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'TTF1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0772 (Fisher's exact test), Q value = 0.3

Table S6023.  Gene #551: 'TTF1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
TTF1 MUTATED 3 0 6
TTF1 WILD-TYPE 84 80 94
'TTF1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.846 (Fisher's exact test), Q value = 1

Table S6024.  Gene #551: 'TTF1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
TTF1 MUTATED 3 4 3
TTF1 WILD-TYPE 86 156 135
'TTF1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S6025.  Gene #551: 'TTF1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
TTF1 MUTATED 5 3 2
TTF1 WILD-TYPE 177 130 70
'TTF1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0905 (Fisher's exact test), Q value = 0.33

Table S6026.  Gene #551: 'TTF1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
TTF1 MUTATED 1 5 3 2
TTF1 WILD-TYPE 111 91 89 184
'TTF1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00359 (Fisher's exact test), Q value = 0.055

Table S6027.  Gene #551: 'TTF1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
TTF1 MUTATED 1 2 5 0 2 0 1
TTF1 WILD-TYPE 59 48 44 40 61 125 98

Figure S1800.  Get High-res Image Gene #551: 'TTF1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'TTF1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.434 (Fisher's exact test), Q value = 0.76

Table S6028.  Gene #551: 'TTF1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
TTF1 MUTATED 4 3 0 4
TTF1 WILD-TYPE 126 75 68 192
'TTF1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0395 (Fisher's exact test), Q value = 0.21

Table S6029.  Gene #551: 'TTF1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
TTF1 MUTATED 1 3 2 0 4 0 1 0 0
TTF1 WILD-TYPE 39 59 26 80 65 48 42 28 74

Figure S1801.  Get High-res Image Gene #551: 'TTF1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'TTF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.252 (Fisher's exact test), Q value = 0.58

Table S6030.  Gene #551: 'TTF1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
TTF1 MUTATED 2 0 0 1
TTF1 WILD-TYPE 31 31 27 18
'TTF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.563 (Fisher's exact test), Q value = 0.87

Table S6031.  Gene #551: 'TTF1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
TTF1 MUTATED 3 0 0 0
TTF1 WILD-TYPE 51 10 24 22
'FGFR1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.12 (Fisher's exact test), Q value = 0.39

Table S6032.  Gene #552: 'FGFR1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
FGFR1 MUTATED 2 0 0 1
FGFR1 WILD-TYPE 44 58 64 42
'FGFR1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S6033.  Gene #552: 'FGFR1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
FGFR1 MUTATED 1 1 1
FGFR1 WILD-TYPE 50 82 76
'FGFR1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0962 (Fisher's exact test), Q value = 0.34

Table S6034.  Gene #552: 'FGFR1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
FGFR1 MUTATED 12 4 2 1
FGFR1 WILD-TYPE 166 179 99 19
'FGFR1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.42 (Fisher's exact test), Q value = 0.75

Table S6035.  Gene #552: 'FGFR1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
FGFR1 MUTATED 3 5 8
FGFR1 WILD-TYPE 84 75 92
'FGFR1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.227 (Fisher's exact test), Q value = 0.54

Table S6036.  Gene #552: 'FGFR1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
FGFR1 MUTATED 1 9 5
FGFR1 WILD-TYPE 88 151 133
'FGFR1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0258 (Fisher's exact test), Q value = 0.16

Table S6037.  Gene #552: 'FGFR1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
FGFR1 MUTATED 3 10 2
FGFR1 WILD-TYPE 179 123 70

Figure S1802.  Get High-res Image Gene #552: 'FGFR1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'FGFR1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0267 (Fisher's exact test), Q value = 0.17

Table S6038.  Gene #552: 'FGFR1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
FGFR1 MUTATED 4 9 1 5
FGFR1 WILD-TYPE 108 87 91 181

Figure S1803.  Get High-res Image Gene #552: 'FGFR1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'FGFR1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.101 (Fisher's exact test), Q value = 0.35

Table S6039.  Gene #552: 'FGFR1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
FGFR1 MUTATED 2 3 5 3 2 2 2
FGFR1 WILD-TYPE 58 47 44 37 61 123 97
'FGFR1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.464 (Fisher's exact test), Q value = 0.79

Table S6040.  Gene #552: 'FGFR1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
FGFR1 MUTATED 8 3 1 7
FGFR1 WILD-TYPE 122 75 67 189
'FGFR1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.177 (Fisher's exact test), Q value = 0.48

Table S6041.  Gene #552: 'FGFR1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
FGFR1 MUTATED 1 2 2 1 7 1 3 0 2
FGFR1 WILD-TYPE 39 60 26 79 62 47 40 28 72
'FGFR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.872 (Fisher's exact test), Q value = 1

Table S6042.  Gene #552: 'FGFR1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
FGFR1 MUTATED 1 1 0 1
FGFR1 WILD-TYPE 32 30 27 18
'FGFR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.309 (Fisher's exact test), Q value = 0.64

Table S6043.  Gene #552: 'FGFR1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
FGFR1 MUTATED 1 1 1 0
FGFR1 WILD-TYPE 53 9 23 22
'OSMR MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.272 (Fisher's exact test), Q value = 0.6

Table S6044.  Gene #553: 'OSMR MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
OSMR MUTATED 0 1 2 3
OSMR WILD-TYPE 46 57 62 40
'OSMR MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.577 (Fisher's exact test), Q value = 0.88

Table S6045.  Gene #553: 'OSMR MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
OSMR MUTATED 2 1 3
OSMR WILD-TYPE 49 82 74
'OSMR MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0115 (Fisher's exact test), Q value = 0.1

Table S6046.  Gene #553: 'OSMR MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
OSMR MUTATED 14 5 1 2
OSMR WILD-TYPE 164 178 100 18

Figure S1804.  Get High-res Image Gene #553: 'OSMR MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'OSMR MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0667 (Fisher's exact test), Q value = 0.28

Table S6047.  Gene #553: 'OSMR MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
OSMR MUTATED 6 1 9
OSMR WILD-TYPE 81 79 91
'OSMR MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.612 (Fisher's exact test), Q value = 0.91

Table S6048.  Gene #553: 'OSMR MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
OSMR MUTATED 3 8 9
OSMR WILD-TYPE 86 152 129
'OSMR MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S6049.  Gene #553: 'OSMR MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
OSMR MUTATED 10 7 3
OSMR WILD-TYPE 172 126 69
'OSMR MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.437 (Fisher's exact test), Q value = 0.76

Table S6050.  Gene #553: 'OSMR MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
OSMR MUTATED 3 6 6 7
OSMR WILD-TYPE 109 90 86 179
'OSMR MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00659 (Fisher's exact test), Q value = 0.074

Table S6051.  Gene #553: 'OSMR MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
OSMR MUTATED 3 1 8 0 3 2 5
OSMR WILD-TYPE 57 49 41 40 60 123 94

Figure S1805.  Get High-res Image Gene #553: 'OSMR MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'OSMR MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.165 (Fisher's exact test), Q value = 0.46

Table S6052.  Gene #553: 'OSMR MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
OSMR MUTATED 8 6 1 6
OSMR WILD-TYPE 122 72 67 190
'OSMR MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.388 (Fisher's exact test), Q value = 0.72

Table S6053.  Gene #553: 'OSMR MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
OSMR MUTATED 2 6 0 3 5 1 0 1 3
OSMR WILD-TYPE 38 56 28 77 64 47 43 27 71
'OSMR MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.343 (Fisher's exact test), Q value = 0.67

Table S6054.  Gene #553: 'OSMR MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
OSMR MUTATED 1 2 0 2
OSMR WILD-TYPE 32 29 27 17
'OSMR MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.266 (Fisher's exact test), Q value = 0.59

Table S6055.  Gene #553: 'OSMR MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
OSMR MUTATED 4 1 0 0
OSMR WILD-TYPE 50 9 24 22
'LASS3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00965 (Fisher's exact test), Q value = 0.093

Table S6056.  Gene #554: 'LASS3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
LASS3 MUTATED 3 1 0 5
LASS3 WILD-TYPE 43 57 64 38

Figure S1806.  Get High-res Image Gene #554: 'LASS3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'LASS3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.515 (Fisher's exact test), Q value = 0.84

Table S6057.  Gene #554: 'LASS3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
LASS3 MUTATED 3 2 4
LASS3 WILD-TYPE 48 81 73
'LASS3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.166 (Fisher's exact test), Q value = 0.46

Table S6058.  Gene #554: 'LASS3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
LASS3 MUTATED 11 4 2 0
LASS3 WILD-TYPE 167 179 99 20
'LASS3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.834 (Fisher's exact test), Q value = 1

Table S6059.  Gene #554: 'LASS3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
LASS3 MUTATED 2 3 4
LASS3 WILD-TYPE 85 77 96
'LASS3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.439 (Fisher's exact test), Q value = 0.77

Table S6060.  Gene #554: 'LASS3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
LASS3 MUTATED 4 8 3
LASS3 WILD-TYPE 85 152 135
'LASS3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0725 (Fisher's exact test), Q value = 0.29

Table S6061.  Gene #554: 'LASS3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
LASS3 MUTATED 3 8 4
LASS3 WILD-TYPE 179 125 68
'LASS3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.497 (Fisher's exact test), Q value = 0.82

Table S6062.  Gene #554: 'LASS3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
LASS3 MUTATED 4 3 1 9
LASS3 WILD-TYPE 108 93 91 177
'LASS3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0669 (Fisher's exact test), Q value = 0.28

Table S6063.  Gene #554: 'LASS3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
LASS3 MUTATED 3 2 0 1 2 1 8
LASS3 WILD-TYPE 57 48 49 39 61 124 91
'LASS3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.527 (Fisher's exact test), Q value = 0.85

Table S6064.  Gene #554: 'LASS3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
LASS3 MUTATED 6 1 1 8
LASS3 WILD-TYPE 124 77 67 188
'LASS3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.346 (Fisher's exact test), Q value = 0.67

Table S6065.  Gene #554: 'LASS3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
LASS3 MUTATED 3 1 2 1 4 2 0 1 2
LASS3 WILD-TYPE 37 61 26 79 65 46 43 27 72
'HGS MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0562 (Fisher's exact test), Q value = 0.26

Table S6066.  Gene #555: 'HGS MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
HGS MUTATED 8 2 0 0
HGS WILD-TYPE 170 181 101 20
'HGS MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0268 (Fisher's exact test), Q value = 0.17

Table S6067.  Gene #555: 'HGS MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
HGS MUTATED 1 1 8
HGS WILD-TYPE 86 79 92

Figure S1807.  Get High-res Image Gene #555: 'HGS MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'HGS MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.697 (Fisher's exact test), Q value = 0.97

Table S6068.  Gene #555: 'HGS MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
HGS MUTATED 1 5 3
HGS WILD-TYPE 88 155 135
'HGS MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.363 (Fisher's exact test), Q value = 0.69

Table S6069.  Gene #555: 'HGS MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
HGS MUTATED 6 3 0
HGS WILD-TYPE 176 130 72
'HGS MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00221 (Fisher's exact test), Q value = 0.04

Table S6070.  Gene #555: 'HGS MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
HGS MUTATED 1 5 4 0
HGS WILD-TYPE 111 91 88 186

Figure S1808.  Get High-res Image Gene #555: 'HGS MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'HGS MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 2e-05 (Fisher's exact test), Q value = 0.0017

Table S6071.  Gene #555: 'HGS MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
HGS MUTATED 1 2 7 0 0 0 0
HGS WILD-TYPE 59 48 42 40 63 125 99

Figure S1809.  Get High-res Image Gene #555: 'HGS MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'HGS MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00023 (Fisher's exact test), Q value = 0.0091

Table S6072.  Gene #555: 'HGS MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
HGS MUTATED 9 1 0 0
HGS WILD-TYPE 121 77 68 196

Figure S1810.  Get High-res Image Gene #555: 'HGS MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'HGS MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.214 (Fisher's exact test), Q value = 0.52

Table S6073.  Gene #555: 'HGS MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
HGS MUTATED 2 2 0 2 4 0 0 0 0
HGS WILD-TYPE 38 60 28 78 65 48 43 28 74
'HGS MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00432 (Fisher's exact test), Q value = 0.06

Table S6074.  Gene #555: 'HGS MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
HGS MUTATED 0 0 0 3
HGS WILD-TYPE 33 31 27 16

Figure S1811.  Get High-res Image Gene #555: 'HGS MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'HGS MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S6075.  Gene #555: 'HGS MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
HGS MUTATED 2 0 1 0
HGS WILD-TYPE 52 10 23 22
'PLEKHA6 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0115 (Fisher's exact test), Q value = 0.1

Table S6076.  Gene #556: 'PLEKHA6 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
PLEKHA6 MUTATED 5 1 0 1
PLEKHA6 WILD-TYPE 41 57 64 42

Figure S1812.  Get High-res Image Gene #556: 'PLEKHA6 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'PLEKHA6 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00078 (Fisher's exact test), Q value = 0.021

Table S6077.  Gene #556: 'PLEKHA6 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
PLEKHA6 MUTATED 6 1 0
PLEKHA6 WILD-TYPE 45 82 77

Figure S1813.  Get High-res Image Gene #556: 'PLEKHA6 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'PLEKHA6 MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S6078.  Gene #556: 'PLEKHA6 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
PLEKHA6 MUTATED 18 0 1 0
PLEKHA6 WILD-TYPE 160 183 100 20

Figure S1814.  Get High-res Image Gene #556: 'PLEKHA6 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'PLEKHA6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0112 (Fisher's exact test), Q value = 0.1

Table S6079.  Gene #556: 'PLEKHA6 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
PLEKHA6 MUTATED 4 0 9
PLEKHA6 WILD-TYPE 83 80 91

Figure S1815.  Get High-res Image Gene #556: 'PLEKHA6 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'PLEKHA6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.249 (Fisher's exact test), Q value = 0.58

Table S6080.  Gene #556: 'PLEKHA6 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
PLEKHA6 MUTATED 2 5 9
PLEKHA6 WILD-TYPE 87 155 129
'PLEKHA6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.555 (Fisher's exact test), Q value = 0.87

Table S6081.  Gene #556: 'PLEKHA6 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
PLEKHA6 MUTATED 10 4 2
PLEKHA6 WILD-TYPE 172 129 70
'PLEKHA6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00442 (Fisher's exact test), Q value = 0.061

Table S6082.  Gene #556: 'PLEKHA6 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
PLEKHA6 MUTATED 0 9 4 7
PLEKHA6 WILD-TYPE 112 87 88 179

Figure S1816.  Get High-res Image Gene #556: 'PLEKHA6 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'PLEKHA6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S6083.  Gene #556: 'PLEKHA6 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
PLEKHA6 MUTATED 0 0 11 1 0 1 7
PLEKHA6 WILD-TYPE 60 50 38 39 63 124 92

Figure S1817.  Get High-res Image Gene #556: 'PLEKHA6 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'PLEKHA6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.107 (Fisher's exact test), Q value = 0.36

Table S6084.  Gene #556: 'PLEKHA6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
PLEKHA6 MUTATED 9 2 0 8
PLEKHA6 WILD-TYPE 121 76 68 188
'PLEKHA6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 3e-05 (Fisher's exact test), Q value = 0.0022

Table S6085.  Gene #556: 'PLEKHA6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
PLEKHA6 MUTATED 2 5 0 0 10 0 0 2 0
PLEKHA6 WILD-TYPE 38 57 28 80 59 48 43 26 74

Figure S1818.  Get High-res Image Gene #556: 'PLEKHA6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'PLEKHA6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0249 (Fisher's exact test), Q value = 0.16

Table S6086.  Gene #556: 'PLEKHA6 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
PLEKHA6 MUTATED 1 0 0 3
PLEKHA6 WILD-TYPE 32 31 27 16

Figure S1819.  Get High-res Image Gene #556: 'PLEKHA6 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'PLEKHA6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.129 (Fisher's exact test), Q value = 0.4

Table S6087.  Gene #556: 'PLEKHA6 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
PLEKHA6 MUTATED 1 0 3 0
PLEKHA6 WILD-TYPE 53 10 21 22
'MAP7D1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00645 (Fisher's exact test), Q value = 0.074

Table S6088.  Gene #557: 'MAP7D1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
MAP7D1 MUTATED 12 1 2 0
MAP7D1 WILD-TYPE 166 182 99 20

Figure S1820.  Get High-res Image Gene #557: 'MAP7D1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'MAP7D1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0181 (Fisher's exact test), Q value = 0.13

Table S6089.  Gene #557: 'MAP7D1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
MAP7D1 MUTATED 6 0 8
MAP7D1 WILD-TYPE 81 80 92

Figure S1821.  Get High-res Image Gene #557: 'MAP7D1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'MAP7D1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0238 (Fisher's exact test), Q value = 0.16

Table S6090.  Gene #557: 'MAP7D1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
MAP7D1 MUTATED 0 5 9
MAP7D1 WILD-TYPE 89 155 129

Figure S1822.  Get High-res Image Gene #557: 'MAP7D1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'MAP7D1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.013 (Fisher's exact test), Q value = 0.11

Table S6091.  Gene #557: 'MAP7D1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
MAP7D1 MUTATED 12 1 1
MAP7D1 WILD-TYPE 170 132 71

Figure S1823.  Get High-res Image Gene #557: 'MAP7D1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'MAP7D1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00026 (Fisher's exact test), Q value = 0.0099

Table S6092.  Gene #557: 'MAP7D1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
MAP7D1 MUTATED 1 4 9 1
MAP7D1 WILD-TYPE 111 92 83 185

Figure S1824.  Get High-res Image Gene #557: 'MAP7D1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'MAP7D1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S6093.  Gene #557: 'MAP7D1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
MAP7D1 MUTATED 1 1 10 0 2 0 1
MAP7D1 WILD-TYPE 59 49 39 40 61 125 98

Figure S1825.  Get High-res Image Gene #557: 'MAP7D1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'MAP7D1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00455 (Fisher's exact test), Q value = 0.061

Table S6094.  Gene #557: 'MAP7D1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
MAP7D1 MUTATED 9 3 1 1
MAP7D1 WILD-TYPE 121 75 67 195

Figure S1826.  Get High-res Image Gene #557: 'MAP7D1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'MAP7D1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00134 (Fisher's exact test), Q value = 0.03

Table S6095.  Gene #557: 'MAP7D1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
MAP7D1 MUTATED 1 7 0 0 3 0 3 0 0
MAP7D1 WILD-TYPE 39 55 28 80 66 48 40 28 74

Figure S1827.  Get High-res Image Gene #557: 'MAP7D1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'MAP7D1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.12 (Fisher's exact test), Q value = 0.39

Table S6096.  Gene #557: 'MAP7D1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
MAP7D1 MUTATED 2 1 0 3
MAP7D1 WILD-TYPE 31 30 27 16
'MAP7D1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.789 (Fisher's exact test), Q value = 1

Table S6097.  Gene #557: 'MAP7D1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
MAP7D1 MUTATED 3 1 1 1
MAP7D1 WILD-TYPE 51 9 23 21
'MPO MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0254 (Fisher's exact test), Q value = 0.16

Table S6098.  Gene #558: 'MPO MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
MPO MUTATED 3 0 0 2
MPO WILD-TYPE 43 58 64 41

Figure S1828.  Get High-res Image Gene #558: 'MPO MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'MPO MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.64 (Fisher's exact test), Q value = 0.93

Table S6099.  Gene #558: 'MPO MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
MPO MUTATED 2 1 2
MPO WILD-TYPE 49 82 75
'MPO MUTATION STATUS' versus 'CN_CNMF'

P value = 0.153 (Fisher's exact test), Q value = 0.44

Table S6100.  Gene #558: 'MPO MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
MPO MUTATED 10 4 1 0
MPO WILD-TYPE 168 179 100 20
'MPO MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.177 (Fisher's exact test), Q value = 0.48

Table S6101.  Gene #558: 'MPO MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
MPO MUTATED 6 1 3
MPO WILD-TYPE 81 79 97
'MPO MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.289 (Fisher's exact test), Q value = 0.62

Table S6102.  Gene #558: 'MPO MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
MPO MUTATED 2 3 7
MPO WILD-TYPE 87 157 131
'MPO MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.636 (Fisher's exact test), Q value = 0.93

Table S6103.  Gene #558: 'MPO MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
MPO MUTATED 7 4 1
MPO WILD-TYPE 175 129 71
'MPO MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.783 (Fisher's exact test), Q value = 1

Table S6104.  Gene #558: 'MPO MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
MPO MUTATED 3 4 4 5
MPO WILD-TYPE 109 92 88 181
'MPO MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.203 (Fisher's exact test), Q value = 0.51

Table S6105.  Gene #558: 'MPO MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
MPO MUTATED 3 2 1 1 5 1 3
MPO WILD-TYPE 57 48 48 39 58 124 96
'MPO MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.471 (Fisher's exact test), Q value = 0.8

Table S6106.  Gene #558: 'MPO MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
MPO MUTATED 2 4 2 8
MPO WILD-TYPE 128 74 66 188
'MPO MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.507 (Fisher's exact test), Q value = 0.83

Table S6107.  Gene #558: 'MPO MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
MPO MUTATED 0 3 1 5 3 0 2 1 1
MPO WILD-TYPE 40 59 27 75 66 48 41 27 73
'MPO MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.169 (Fisher's exact test), Q value = 0.46

Table S6108.  Gene #558: 'MPO MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
MPO MUTATED 0 3 1 0
MPO WILD-TYPE 33 28 26 19
'MPO MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.869 (Fisher's exact test), Q value = 1

Table S6109.  Gene #558: 'MPO MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
MPO MUTATED 3 0 1 0
MPO WILD-TYPE 51 10 23 22
'WBP11 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0234 (Fisher's exact test), Q value = 0.16

Table S6110.  Gene #559: 'WBP11 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
WBP11 MUTATED 7 0 1 0
WBP11 WILD-TYPE 171 183 100 20

Figure S1829.  Get High-res Image Gene #559: 'WBP11 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'WBP11 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0264 (Fisher's exact test), Q value = 0.16

Table S6111.  Gene #559: 'WBP11 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
WBP11 MUTATED 1 0 6
WBP11 WILD-TYPE 86 80 94

Figure S1830.  Get High-res Image Gene #559: 'WBP11 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'WBP11 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S6112.  Gene #559: 'WBP11 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
WBP11 MUTATED 1 3 2
WBP11 WILD-TYPE 88 157 136
'WBP11 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.493 (Fisher's exact test), Q value = 0.82

Table S6113.  Gene #559: 'WBP11 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
WBP11 MUTATED 2 2 2
WBP11 WILD-TYPE 180 131 70
'WBP11 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.101 (Fisher's exact test), Q value = 0.35

Table S6114.  Gene #559: 'WBP11 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
WBP11 MUTATED 1 4 2 1
WBP11 WILD-TYPE 111 92 90 185
'WBP11 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0312 (Fisher's exact test), Q value = 0.18

Table S6115.  Gene #559: 'WBP11 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
WBP11 MUTATED 1 1 3 2 0 1 0
WBP11 WILD-TYPE 59 49 46 38 63 124 99

Figure S1831.  Get High-res Image Gene #559: 'WBP11 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'WBP11 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00558 (Fisher's exact test), Q value = 0.068

Table S6116.  Gene #559: 'WBP11 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
WBP11 MUTATED 7 0 0 1
WBP11 WILD-TYPE 123 78 68 195

Figure S1832.  Get High-res Image Gene #559: 'WBP11 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'WBP11 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0232 (Fisher's exact test), Q value = 0.15

Table S6117.  Gene #559: 'WBP11 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
WBP11 MUTATED 4 0 0 1 2 1 0 0 0
WBP11 WILD-TYPE 36 62 28 79 67 47 43 28 74

Figure S1833.  Get High-res Image Gene #559: 'WBP11 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'RASA2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.153 (Fisher's exact test), Q value = 0.44

Table S6118.  Gene #560: 'RASA2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
RASA2 MUTATED 0 1 0 2
RASA2 WILD-TYPE 46 57 64 41
'RASA2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.787 (Fisher's exact test), Q value = 1

Table S6119.  Gene #560: 'RASA2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
RASA2 MUTATED 0 2 1
RASA2 WILD-TYPE 51 81 76
'RASA2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0585 (Fisher's exact test), Q value = 0.26

Table S6120.  Gene #560: 'RASA2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
RASA2 MUTATED 12 3 2 0
RASA2 WILD-TYPE 166 180 99 20
'RASA2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.294 (Fisher's exact test), Q value = 0.62

Table S6121.  Gene #560: 'RASA2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
RASA2 MUTATED 7 2 5
RASA2 WILD-TYPE 80 78 95
'RASA2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.648 (Fisher's exact test), Q value = 0.94

Table S6122.  Gene #560: 'RASA2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
RASA2 MUTATED 2 8 6
RASA2 WILD-TYPE 87 152 132
'RASA2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0463 (Fisher's exact test), Q value = 0.23

Table S6123.  Gene #560: 'RASA2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
RASA2 MUTATED 3 9 4
RASA2 WILD-TYPE 179 124 68

Figure S1834.  Get High-res Image Gene #560: 'RASA2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'RASA2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.121 (Fisher's exact test), Q value = 0.39

Table S6124.  Gene #560: 'RASA2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
RASA2 MUTATED 2 7 4 4
RASA2 WILD-TYPE 110 89 88 182
'RASA2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0247 (Fisher's exact test), Q value = 0.16

Table S6125.  Gene #560: 'RASA2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
RASA2 MUTATED 1 5 4 2 2 1 2
RASA2 WILD-TYPE 59 45 45 38 61 124 97

Figure S1835.  Get High-res Image Gene #560: 'RASA2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'RASA2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0791 (Fisher's exact test), Q value = 0.3

Table S6126.  Gene #560: 'RASA2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
RASA2 MUTATED 7 5 0 5
RASA2 WILD-TYPE 123 73 68 191
'RASA2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0638 (Fisher's exact test), Q value = 0.27

Table S6127.  Gene #560: 'RASA2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
RASA2 MUTATED 6 3 1 2 2 0 1 0 2
RASA2 WILD-TYPE 34 59 27 78 67 48 42 28 72
'RASA2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0943 (Fisher's exact test), Q value = 0.34

Table S6128.  Gene #560: 'RASA2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
RASA2 MUTATED 2 0 0 2
RASA2 WILD-TYPE 31 31 27 17
'RASA2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.87 (Fisher's exact test), Q value = 1

Table S6129.  Gene #560: 'RASA2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
RASA2 MUTATED 3 0 1 0
RASA2 WILD-TYPE 51 10 23 22
'PLCH2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.309 (Fisher's exact test), Q value = 0.64

Table S6130.  Gene #561: 'PLCH2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
PLCH2 MUTATED 8 7 2 2
PLCH2 WILD-TYPE 170 176 99 18
'PLCH2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.482 (Fisher's exact test), Q value = 0.81

Table S6131.  Gene #561: 'PLCH2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
PLCH2 MUTATED 4 5 9
PLCH2 WILD-TYPE 83 75 91
'PLCH2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.25 (Fisher's exact test), Q value = 0.58

Table S6132.  Gene #561: 'PLCH2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
PLCH2 MUTATED 2 5 9
PLCH2 WILD-TYPE 87 155 129
'PLCH2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0935 (Fisher's exact test), Q value = 0.33

Table S6133.  Gene #561: 'PLCH2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
PLCH2 MUTATED 12 3 1
PLCH2 WILD-TYPE 170 130 71
'PLCH2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00376 (Fisher's exact test), Q value = 0.056

Table S6134.  Gene #561: 'PLCH2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
PLCH2 MUTATED 5 7 6 1
PLCH2 WILD-TYPE 107 89 86 185

Figure S1836.  Get High-res Image Gene #561: 'PLCH2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'PLCH2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00171 (Fisher's exact test), Q value = 0.034

Table S6135.  Gene #561: 'PLCH2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
PLCH2 MUTATED 3 3 5 3 4 0 1
PLCH2 WILD-TYPE 57 47 44 37 59 125 98

Figure S1837.  Get High-res Image Gene #561: 'PLCH2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'PLCH2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00072 (Fisher's exact test), Q value = 0.02

Table S6136.  Gene #561: 'PLCH2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
PLCH2 MUTATED 10 6 2 1
PLCH2 WILD-TYPE 120 72 66 195

Figure S1838.  Get High-res Image Gene #561: 'PLCH2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'PLCH2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.115 (Fisher's exact test), Q value = 0.38

Table S6137.  Gene #561: 'PLCH2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
PLCH2 MUTATED 3 5 1 4 2 0 3 1 0
PLCH2 WILD-TYPE 37 57 27 76 67 48 40 27 74
'PLCH2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S6138.  Gene #561: 'PLCH2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
PLCH2 MUTATED 3 3 2 2
PLCH2 WILD-TYPE 30 28 25 17
'PLCH2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.794 (Fisher's exact test), Q value = 1

Table S6139.  Gene #561: 'PLCH2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
PLCH2 MUTATED 5 1 3 1
PLCH2 WILD-TYPE 49 9 21 21
'C1ORF59 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.818 (Fisher's exact test), Q value = 1

Table S6140.  Gene #562: 'C1ORF59 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
C1ORF59 MUTATED 4 3 3 0
C1ORF59 WILD-TYPE 174 180 98 20
'C1ORF59 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.399 (Fisher's exact test), Q value = 0.72

Table S6141.  Gene #562: 'C1ORF59 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
C1ORF59 MUTATED 5 2 2
C1ORF59 WILD-TYPE 82 78 98
'C1ORF59 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.382 (Fisher's exact test), Q value = 0.71

Table S6142.  Gene #562: 'C1ORF59 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
C1ORF59 MUTATED 1 2 5
C1ORF59 WILD-TYPE 88 158 133
'C1ORF59 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.895 (Fisher's exact test), Q value = 1

Table S6143.  Gene #562: 'C1ORF59 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
C1ORF59 MUTATED 5 2 1
C1ORF59 WILD-TYPE 177 131 71
'C1ORF59 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.292 (Fisher's exact test), Q value = 0.62

Table S6144.  Gene #562: 'C1ORF59 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
C1ORF59 MUTATED 3 1 4 2
C1ORF59 WILD-TYPE 109 95 88 184
'C1ORF59 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.531 (Fisher's exact test), Q value = 0.85

Table S6145.  Gene #562: 'C1ORF59 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
C1ORF59 MUTATED 2 1 2 1 2 1 1
C1ORF59 WILD-TYPE 58 49 47 39 61 124 98
'C1ORF59 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.195 (Fisher's exact test), Q value = 0.5

Table S6146.  Gene #562: 'C1ORF59 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
C1ORF59 MUTATED 4 3 0 2
C1ORF59 WILD-TYPE 126 75 68 194
'C1ORF59 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.185 (Fisher's exact test), Q value = 0.49

Table S6147.  Gene #562: 'C1ORF59 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
C1ORF59 MUTATED 0 3 1 4 0 0 0 0 1
C1ORF59 WILD-TYPE 40 59 27 76 69 48 43 28 73
'C1ORF59 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.547 (Fisher's exact test), Q value = 0.87

Table S6148.  Gene #562: 'C1ORF59 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
C1ORF59 MUTATED 2 2 0 0
C1ORF59 WILD-TYPE 31 29 27 19
'C1ORF59 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.601 (Fisher's exact test), Q value = 0.9

Table S6149.  Gene #562: 'C1ORF59 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
C1ORF59 MUTATED 2 1 1 0
C1ORF59 WILD-TYPE 52 9 23 22
'MEPE MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00791 (Fisher's exact test), Q value = 0.083

Table S6150.  Gene #563: 'MEPE MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
MEPE MUTATED 0 1 0 4
MEPE WILD-TYPE 46 57 64 39

Figure S1839.  Get High-res Image Gene #563: 'MEPE MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'MEPE MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.638 (Fisher's exact test), Q value = 0.93

Table S6151.  Gene #563: 'MEPE MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
MEPE MUTATED 2 1 2
MEPE WILD-TYPE 49 82 75
'MEPE MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0106 (Fisher's exact test), Q value = 0.099

Table S6152.  Gene #563: 'MEPE MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
MEPE MUTATED 13 5 0 0
MEPE WILD-TYPE 165 178 101 20

Figure S1840.  Get High-res Image Gene #563: 'MEPE MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'MEPE MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.151 (Fisher's exact test), Q value = 0.44

Table S6153.  Gene #563: 'MEPE MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
MEPE MUTATED 7 3 2
MEPE WILD-TYPE 80 77 98
'MEPE MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.374 (Fisher's exact test), Q value = 0.7

Table S6154.  Gene #563: 'MEPE MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
MEPE MUTATED 4 5 9
MEPE WILD-TYPE 85 155 129
'MEPE MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.503 (Fisher's exact test), Q value = 0.83

Table S6155.  Gene #563: 'MEPE MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
MEPE MUTATED 10 4 4
MEPE WILD-TYPE 172 129 68
'MEPE MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.237 (Fisher's exact test), Q value = 0.56

Table S6156.  Gene #563: 'MEPE MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
MEPE MUTATED 3 3 7 5
MEPE WILD-TYPE 109 93 85 181
'MEPE MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.014 (Fisher's exact test), Q value = 0.12

Table S6157.  Gene #563: 'MEPE MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
MEPE MUTATED 1 1 7 2 3 2 2
MEPE WILD-TYPE 59 49 42 38 60 123 97

Figure S1841.  Get High-res Image Gene #563: 'MEPE MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'MEPE MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0166 (Fisher's exact test), Q value = 0.13

Table S6158.  Gene #563: 'MEPE MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
MEPE MUTATED 4 8 1 4
MEPE WILD-TYPE 126 70 67 192

Figure S1842.  Get High-res Image Gene #563: 'MEPE MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'MEPE MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0174 (Fisher's exact test), Q value = 0.13

Table S6159.  Gene #563: 'MEPE MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
MEPE MUTATED 3 7 0 0 3 1 0 1 2
MEPE WILD-TYPE 37 55 28 80 66 47 43 27 72

Figure S1843.  Get High-res Image Gene #563: 'MEPE MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'MEPE MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.39 (Fisher's exact test), Q value = 0.72

Table S6160.  Gene #563: 'MEPE MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
MEPE MUTATED 2 1 0 2
MEPE WILD-TYPE 31 30 27 17
'MEPE MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S6161.  Gene #563: 'MEPE MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
MEPE MUTATED 3 0 1 1
MEPE WILD-TYPE 51 10 23 21
'RNASEL MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.309 (Fisher's exact test), Q value = 0.64

Table S6162.  Gene #564: 'RNASEL MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
RNASEL MUTATED 1 1 0 2
RNASEL WILD-TYPE 45 57 64 41
'RNASEL MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.557 (Fisher's exact test), Q value = 0.87

Table S6163.  Gene #564: 'RNASEL MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
RNASEL MUTATED 2 1 1
RNASEL WILD-TYPE 49 82 76
'RNASEL MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0313 (Fisher's exact test), Q value = 0.18

Table S6164.  Gene #564: 'RNASEL MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
RNASEL MUTATED 10 2 1 1
RNASEL WILD-TYPE 168 181 100 19

Figure S1844.  Get High-res Image Gene #564: 'RNASEL MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'RNASEL MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.64 (Fisher's exact test), Q value = 0.93

Table S6165.  Gene #564: 'RNASEL MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
RNASEL MUTATED 5 2 4
RNASEL WILD-TYPE 82 78 96
'RNASEL MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0209 (Fisher's exact test), Q value = 0.15

Table S6166.  Gene #564: 'RNASEL MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
RNASEL MUTATED 1 2 9
RNASEL WILD-TYPE 88 158 129

Figure S1845.  Get High-res Image Gene #564: 'RNASEL MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'RNASEL MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.162 (Fisher's exact test), Q value = 0.46

Table S6167.  Gene #564: 'RNASEL MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
RNASEL MUTATED 9 2 1
RNASEL WILD-TYPE 173 131 71
'RNASEL MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.144 (Fisher's exact test), Q value = 0.42

Table S6168.  Gene #564: 'RNASEL MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
RNASEL MUTATED 2 3 6 3
RNASEL WILD-TYPE 110 93 86 183
'RNASEL MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.195 (Fisher's exact test), Q value = 0.5

Table S6169.  Gene #564: 'RNASEL MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
RNASEL MUTATED 1 1 4 2 2 1 3
RNASEL WILD-TYPE 59 49 45 38 61 124 96
'RNASEL MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.514 (Fisher's exact test), Q value = 0.83

Table S6170.  Gene #564: 'RNASEL MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
RNASEL MUTATED 4 4 1 4
RNASEL WILD-TYPE 126 74 67 192
'RNASEL MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0142 (Fisher's exact test), Q value = 0.12

Table S6171.  Gene #564: 'RNASEL MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
RNASEL MUTATED 0 6 2 2 0 0 2 0 1
RNASEL WILD-TYPE 40 56 26 78 69 48 41 28 73

Figure S1846.  Get High-res Image Gene #564: 'RNASEL MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'RNASEL MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.327 (Fisher's exact test), Q value = 0.66

Table S6172.  Gene #564: 'RNASEL MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
RNASEL MUTATED 1 2 1 3
RNASEL WILD-TYPE 32 29 26 16
'RNASEL MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.55 (Fisher's exact test), Q value = 0.87

Table S6173.  Gene #564: 'RNASEL MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
RNASEL MUTATED 4 1 2 0
RNASEL WILD-TYPE 50 9 22 22
'ESCO2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.307 (Fisher's exact test), Q value = 0.64

Table S6174.  Gene #565: 'ESCO2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ESCO2 MUTATED 1 1 0 2
ESCO2 WILD-TYPE 45 57 64 41
'ESCO2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.231 (Fisher's exact test), Q value = 0.55

Table S6175.  Gene #565: 'ESCO2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ESCO2 MUTATED 2 2 0
ESCO2 WILD-TYPE 49 81 77
'ESCO2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.107 (Fisher's exact test), Q value = 0.36

Table S6176.  Gene #565: 'ESCO2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ESCO2 MUTATED 9 3 1 1
ESCO2 WILD-TYPE 169 180 100 19
'ESCO2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.178 (Fisher's exact test), Q value = 0.48

Table S6177.  Gene #565: 'ESCO2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ESCO2 MUTATED 6 1 3
ESCO2 WILD-TYPE 81 79 97
'ESCO2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0542 (Fisher's exact test), Q value = 0.25

Table S6178.  Gene #565: 'ESCO2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ESCO2 MUTATED 1 3 9
ESCO2 WILD-TYPE 88 157 129
'ESCO2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.612 (Fisher's exact test), Q value = 0.91

Table S6179.  Gene #565: 'ESCO2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ESCO2 MUTATED 8 3 2
ESCO2 WILD-TYPE 174 130 70
'ESCO2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.517 (Fisher's exact test), Q value = 0.84

Table S6180.  Gene #565: 'ESCO2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ESCO2 MUTATED 2 4 4 4
ESCO2 WILD-TYPE 110 92 88 182
'ESCO2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.132 (Fisher's exact test), Q value = 0.41

Table S6181.  Gene #565: 'ESCO2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ESCO2 MUTATED 1 2 4 0 3 1 3
ESCO2 WILD-TYPE 59 48 45 40 60 124 96
'ESCO2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.211 (Fisher's exact test), Q value = 0.52

Table S6182.  Gene #565: 'ESCO2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ESCO2 MUTATED 6 3 0 4
ESCO2 WILD-TYPE 124 75 68 192
'ESCO2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.244 (Fisher's exact test), Q value = 0.57

Table S6183.  Gene #565: 'ESCO2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ESCO2 MUTATED 2 3 2 0 3 1 0 0 2
ESCO2 WILD-TYPE 38 59 26 80 66 47 43 28 72
'ESCO2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S6184.  Gene #565: 'ESCO2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
ESCO2 MUTATED 1 1 1 1
ESCO2 WILD-TYPE 32 30 26 18
'ESCO2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.266 (Fisher's exact test), Q value = 0.59

Table S6185.  Gene #565: 'ESCO2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
ESCO2 MUTATED 1 1 1 1
ESCO2 WILD-TYPE 53 9 23 21
'CCDC88A MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0101 (Fisher's exact test), Q value = 0.096

Table S6186.  Gene #566: 'CCDC88A MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
CCDC88A MUTATED 5 0 2 5
CCDC88A WILD-TYPE 41 58 62 38

Figure S1847.  Get High-res Image Gene #566: 'CCDC88A MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'CCDC88A MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0939 (Fisher's exact test), Q value = 0.34

Table S6187.  Gene #566: 'CCDC88A MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
CCDC88A MUTATED 6 2 4
CCDC88A WILD-TYPE 45 81 73
'CCDC88A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00124 (Fisher's exact test), Q value = 0.029

Table S6188.  Gene #566: 'CCDC88A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
CCDC88A MUTATED 24 6 4 2
CCDC88A WILD-TYPE 154 177 97 18

Figure S1848.  Get High-res Image Gene #566: 'CCDC88A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'CCDC88A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0333 (Fisher's exact test), Q value = 0.19

Table S6189.  Gene #566: 'CCDC88A MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
CCDC88A MUTATED 11 2 11
CCDC88A WILD-TYPE 76 78 89

Figure S1849.  Get High-res Image Gene #566: 'CCDC88A MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'CCDC88A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.112 (Fisher's exact test), Q value = 0.37

Table S6190.  Gene #566: 'CCDC88A MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
CCDC88A MUTATED 2 14 10
CCDC88A WILD-TYPE 87 146 128
'CCDC88A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.719 (Fisher's exact test), Q value = 0.99

Table S6191.  Gene #566: 'CCDC88A MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
CCDC88A MUTATED 11 11 4
CCDC88A WILD-TYPE 171 122 68
'CCDC88A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0364 (Fisher's exact test), Q value = 0.2

Table S6192.  Gene #566: 'CCDC88A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
CCDC88A MUTATED 3 8 12 12
CCDC88A WILD-TYPE 109 88 80 174

Figure S1850.  Get High-res Image Gene #566: 'CCDC88A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'CCDC88A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00049 (Fisher's exact test), Q value = 0.015

Table S6193.  Gene #566: 'CCDC88A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
CCDC88A MUTATED 3 1 11 1 6 3 10
CCDC88A WILD-TYPE 57 49 38 39 57 122 89

Figure S1851.  Get High-res Image Gene #566: 'CCDC88A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CCDC88A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.122 (Fisher's exact test), Q value = 0.39

Table S6194.  Gene #566: 'CCDC88A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
CCDC88A MUTATED 9 7 1 19
CCDC88A WILD-TYPE 121 71 67 177
'CCDC88A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0452 (Fisher's exact test), Q value = 0.23

Table S6195.  Gene #566: 'CCDC88A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
CCDC88A MUTATED 1 5 4 8 11 3 2 0 2
CCDC88A WILD-TYPE 39 57 24 72 58 45 41 28 72

Figure S1852.  Get High-res Image Gene #566: 'CCDC88A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'CCDC88A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.135 (Fisher's exact test), Q value = 0.41

Table S6196.  Gene #566: 'CCDC88A MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
CCDC88A MUTATED 3 3 1 5
CCDC88A WILD-TYPE 30 28 26 14
'CCDC88A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.341 (Fisher's exact test), Q value = 0.67

Table S6197.  Gene #566: 'CCDC88A MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
CCDC88A MUTATED 5 1 5 1
CCDC88A WILD-TYPE 49 9 19 21
'ATP8B1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.159 (Fisher's exact test), Q value = 0.45

Table S6198.  Gene #567: 'ATP8B1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ATP8B1 MUTATED 4 1 1 3
ATP8B1 WILD-TYPE 42 57 63 40
'ATP8B1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.689 (Fisher's exact test), Q value = 0.97

Table S6199.  Gene #567: 'ATP8B1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ATP8B1 MUTATED 3 4 2
ATP8B1 WILD-TYPE 48 79 75
'ATP8B1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00296 (Fisher's exact test), Q value = 0.049

Table S6200.  Gene #567: 'ATP8B1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ATP8B1 MUTATED 20 5 3 0
ATP8B1 WILD-TYPE 158 178 98 20

Figure S1853.  Get High-res Image Gene #567: 'ATP8B1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ATP8B1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0714 (Fisher's exact test), Q value = 0.29

Table S6201.  Gene #567: 'ATP8B1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ATP8B1 MUTATED 10 2 7
ATP8B1 WILD-TYPE 77 78 93
'ATP8B1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00096 (Fisher's exact test), Q value = 0.024

Table S6202.  Gene #567: 'ATP8B1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ATP8B1 MUTATED 1 6 17
ATP8B1 WILD-TYPE 88 154 121

Figure S1854.  Get High-res Image Gene #567: 'ATP8B1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'ATP8B1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0769 (Fisher's exact test), Q value = 0.3

Table S6203.  Gene #567: 'ATP8B1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ATP8B1 MUTATED 16 7 1
ATP8B1 WILD-TYPE 166 126 71
'ATP8B1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00938 (Fisher's exact test), Q value = 0.091

Table S6204.  Gene #567: 'ATP8B1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ATP8B1 MUTATED 2 4 12 10
ATP8B1 WILD-TYPE 110 92 80 176

Figure S1855.  Get High-res Image Gene #567: 'ATP8B1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'ATP8B1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.118 (Fisher's exact test), Q value = 0.38

Table S6205.  Gene #567: 'ATP8B1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ATP8B1 MUTATED 3 3 7 1 5 3 6
ATP8B1 WILD-TYPE 57 47 42 39 58 122 93
'ATP8B1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.569 (Fisher's exact test), Q value = 0.88

Table S6206.  Gene #567: 'ATP8B1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ATP8B1 MUTATED 9 6 2 10
ATP8B1 WILD-TYPE 121 72 66 186
'ATP8B1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0652 (Fisher's exact test), Q value = 0.28

Table S6207.  Gene #567: 'ATP8B1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ATP8B1 MUTATED 5 7 2 5 3 0 2 2 1
ATP8B1 WILD-TYPE 35 55 26 75 66 48 41 26 73
'ATP8B1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.232 (Fisher's exact test), Q value = 0.55

Table S6208.  Gene #567: 'ATP8B1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
ATP8B1 MUTATED 2 2 1 4
ATP8B1 WILD-TYPE 31 29 26 15
'ATP8B1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.414 (Fisher's exact test), Q value = 0.74

Table S6209.  Gene #567: 'ATP8B1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
ATP8B1 MUTATED 6 1 2 0
ATP8B1 WILD-TYPE 48 9 22 22
'LAMC1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0271 (Fisher's exact test), Q value = 0.17

Table S6210.  Gene #568: 'LAMC1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
LAMC1 MUTATED 3 1 0 4
LAMC1 WILD-TYPE 43 57 64 39

Figure S1856.  Get High-res Image Gene #568: 'LAMC1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'LAMC1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.309 (Fisher's exact test), Q value = 0.64

Table S6211.  Gene #568: 'LAMC1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
LAMC1 MUTATED 4 2 2
LAMC1 WILD-TYPE 47 81 75
'LAMC1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.274 (Fisher's exact test), Q value = 0.6

Table S6212.  Gene #568: 'LAMC1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
LAMC1 MUTATED 13 6 4 0
LAMC1 WILD-TYPE 165 177 97 20
'LAMC1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.25 (Fisher's exact test), Q value = 0.58

Table S6213.  Gene #568: 'LAMC1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
LAMC1 MUTATED 8 3 4
LAMC1 WILD-TYPE 79 77 96
'LAMC1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.34 (Fisher's exact test), Q value = 0.67

Table S6214.  Gene #568: 'LAMC1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
LAMC1 MUTATED 4 12 5
LAMC1 WILD-TYPE 85 148 133
'LAMC1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.138 (Fisher's exact test), Q value = 0.41

Table S6215.  Gene #568: 'LAMC1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
LAMC1 MUTATED 6 11 4
LAMC1 WILD-TYPE 176 122 68
'LAMC1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.971 (Fisher's exact test), Q value = 1

Table S6216.  Gene #568: 'LAMC1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
LAMC1 MUTATED 5 4 5 9
LAMC1 WILD-TYPE 107 92 87 177
'LAMC1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.148 (Fisher's exact test), Q value = 0.43

Table S6217.  Gene #568: 'LAMC1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
LAMC1 MUTATED 3 4 3 2 3 1 7
LAMC1 WILD-TYPE 57 46 46 38 60 124 92
'LAMC1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.552 (Fisher's exact test), Q value = 0.87

Table S6218.  Gene #568: 'LAMC1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
LAMC1 MUTATED 8 3 1 9
LAMC1 WILD-TYPE 122 75 67 187
'LAMC1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.24 (Fisher's exact test), Q value = 0.56

Table S6219.  Gene #568: 'LAMC1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
LAMC1 MUTATED 5 3 2 2 5 1 1 0 2
LAMC1 WILD-TYPE 35 59 26 78 64 47 42 28 72
'LAMC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.698 (Fisher's exact test), Q value = 0.97

Table S6220.  Gene #568: 'LAMC1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
LAMC1 MUTATED 2 1 0 1
LAMC1 WILD-TYPE 31 30 27 18
'LAMC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.542 (Fisher's exact test), Q value = 0.86

Table S6221.  Gene #568: 'LAMC1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
LAMC1 MUTATED 2 0 0 2
LAMC1 WILD-TYPE 52 10 24 20
'SLFN12L MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.122 (Fisher's exact test), Q value = 0.39

Table S6222.  Gene #569: 'SLFN12L MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
SLFN12L MUTATED 2 0 0 1
SLFN12L WILD-TYPE 44 58 64 42
'SLFN12L MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.187 (Fisher's exact test), Q value = 0.49

Table S6223.  Gene #569: 'SLFN12L MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
SLFN12L MUTATED 2 0 1
SLFN12L WILD-TYPE 49 83 76
'SLFN12L MUTATION STATUS' versus 'CN_CNMF'

P value = 0.202 (Fisher's exact test), Q value = 0.51

Table S6224.  Gene #569: 'SLFN12L MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
SLFN12L MUTATED 4 1 1 1
SLFN12L WILD-TYPE 174 182 100 19
'SLFN12L MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0553 (Fisher's exact test), Q value = 0.26

Table S6225.  Gene #569: 'SLFN12L MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
SLFN12L MUTATED 4 1 0
SLFN12L WILD-TYPE 83 79 100
'SLFN12L MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.14 (Fisher's exact test), Q value = 0.42

Table S6226.  Gene #569: 'SLFN12L MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
SLFN12L MUTATED 0 2 5
SLFN12L WILD-TYPE 89 158 133
'SLFN12L MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.886 (Fisher's exact test), Q value = 1

Table S6227.  Gene #569: 'SLFN12L MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
SLFN12L MUTATED 3 3 1
SLFN12L WILD-TYPE 179 130 71
'SLFN12L MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.544 (Fisher's exact test), Q value = 0.86

Table S6228.  Gene #569: 'SLFN12L MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
SLFN12L MUTATED 1 2 3 2
SLFN12L WILD-TYPE 111 94 89 184
'SLFN12L MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.419 (Fisher's exact test), Q value = 0.75

Table S6229.  Gene #569: 'SLFN12L MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
SLFN12L MUTATED 1 1 1 1 1 0 3
SLFN12L WILD-TYPE 59 49 48 39 62 125 96
'SLFN12L MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.761 (Fisher's exact test), Q value = 1

Table S6230.  Gene #569: 'SLFN12L MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
SLFN12L MUTATED 2 2 0 4
SLFN12L WILD-TYPE 128 76 68 192
'SLFN12L MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.821 (Fisher's exact test), Q value = 1

Table S6231.  Gene #569: 'SLFN12L MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
SLFN12L MUTATED 0 2 0 1 3 1 0 0 1
SLFN12L WILD-TYPE 40 60 28 79 66 47 43 28 73
'PLXNA3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00328 (Fisher's exact test), Q value = 0.052

Table S6232.  Gene #570: 'PLXNA3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
PLXNA3 MUTATED 15 2 2 0
PLXNA3 WILD-TYPE 163 181 99 20

Figure S1857.  Get High-res Image Gene #570: 'PLXNA3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'PLXNA3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0189 (Fisher's exact test), Q value = 0.14

Table S6233.  Gene #570: 'PLXNA3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
PLXNA3 MUTATED 3 2 12
PLXNA3 WILD-TYPE 84 78 88

Figure S1858.  Get High-res Image Gene #570: 'PLXNA3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'PLXNA3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.461 (Fisher's exact test), Q value = 0.79

Table S6234.  Gene #570: 'PLXNA3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
PLXNA3 MUTATED 2 7 8
PLXNA3 WILD-TYPE 87 153 130
'PLXNA3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.609 (Fisher's exact test), Q value = 0.91

Table S6235.  Gene #570: 'PLXNA3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
PLXNA3 MUTATED 9 4 4
PLXNA3 WILD-TYPE 173 129 68
'PLXNA3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00207 (Fisher's exact test), Q value = 0.038

Table S6236.  Gene #570: 'PLXNA3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
PLXNA3 MUTATED 3 10 4 2
PLXNA3 WILD-TYPE 109 86 88 184

Figure S1859.  Get High-res Image Gene #570: 'PLXNA3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'PLXNA3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S6237.  Gene #570: 'PLXNA3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
PLXNA3 MUTATED 1 1 11 1 2 0 3
PLXNA3 WILD-TYPE 59 49 38 39 61 125 96

Figure S1860.  Get High-res Image Gene #570: 'PLXNA3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'PLXNA3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00024 (Fisher's exact test), Q value = 0.0094

Table S6238.  Gene #570: 'PLXNA3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
PLXNA3 MUTATED 14 1 2 2
PLXNA3 WILD-TYPE 116 77 66 194

Figure S1861.  Get High-res Image Gene #570: 'PLXNA3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'PLXNA3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0835 (Fisher's exact test), Q value = 0.31

Table S6239.  Gene #570: 'PLXNA3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
PLXNA3 MUTATED 4 4 0 1 6 1 2 0 1
PLXNA3 WILD-TYPE 36 58 28 79 63 47 41 28 73
'PLXNA3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00248 (Fisher's exact test), Q value = 0.043

Table S6240.  Gene #570: 'PLXNA3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
PLXNA3 MUTATED 0 1 0 4
PLXNA3 WILD-TYPE 33 30 27 15

Figure S1862.  Get High-res Image Gene #570: 'PLXNA3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'PLXNA3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S6241.  Gene #570: 'PLXNA3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
PLXNA3 MUTATED 3 0 1 1
PLXNA3 WILD-TYPE 51 10 23 21
'ITGAV MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.48 (Fisher's exact test), Q value = 0.81

Table S6242.  Gene #571: 'ITGAV MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ITGAV MUTATED 1 2 0 1
ITGAV WILD-TYPE 45 56 64 42
'ITGAV MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S6243.  Gene #571: 'ITGAV MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ITGAV MUTATED 1 2 1
ITGAV WILD-TYPE 50 81 76
'ITGAV MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0087 (Fisher's exact test), Q value = 0.087

Table S6244.  Gene #571: 'ITGAV MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ITGAV MUTATED 12 1 4 0
ITGAV WILD-TYPE 166 182 97 20

Figure S1863.  Get High-res Image Gene #571: 'ITGAV MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ITGAV MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.177 (Fisher's exact test), Q value = 0.48

Table S6245.  Gene #571: 'ITGAV MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ITGAV MUTATED 6 1 6
ITGAV WILD-TYPE 81 79 94
'ITGAV MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.167 (Fisher's exact test), Q value = 0.46

Table S6246.  Gene #571: 'ITGAV MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ITGAV MUTATED 1 5 8
ITGAV WILD-TYPE 88 155 130
'ITGAV MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.392 (Fisher's exact test), Q value = 0.72

Table S6247.  Gene #571: 'ITGAV MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ITGAV MUTATED 9 4 1
ITGAV WILD-TYPE 173 129 71
'ITGAV MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0104 (Fisher's exact test), Q value = 0.097

Table S6248.  Gene #571: 'ITGAV MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ITGAV MUTATED 1 7 6 3
ITGAV WILD-TYPE 111 89 86 183

Figure S1864.  Get High-res Image Gene #571: 'ITGAV MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'ITGAV MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00421 (Fisher's exact test), Q value = 0.059

Table S6249.  Gene #571: 'ITGAV MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ITGAV MUTATED 2 3 7 0 2 2 1
ITGAV WILD-TYPE 58 47 42 40 61 123 98

Figure S1865.  Get High-res Image Gene #571: 'ITGAV MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ITGAV MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.307 (Fisher's exact test), Q value = 0.64

Table S6250.  Gene #571: 'ITGAV MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ITGAV MUTATED 8 3 1 5
ITGAV WILD-TYPE 122 75 67 191
'ITGAV MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.184 (Fisher's exact test), Q value = 0.48

Table S6251.  Gene #571: 'ITGAV MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ITGAV MUTATED 3 5 0 2 4 0 2 0 1
ITGAV WILD-TYPE 37 57 28 78 65 48 41 28 73
'ITGAV MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.267 (Fisher's exact test), Q value = 0.59

Table S6252.  Gene #571: 'ITGAV MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
ITGAV MUTATED 1 0 1 2
ITGAV WILD-TYPE 32 31 26 17
'ITGAV MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.869 (Fisher's exact test), Q value = 1

Table S6253.  Gene #571: 'ITGAV MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
ITGAV MUTATED 3 0 1 0
ITGAV WILD-TYPE 51 10 23 22
'TAF12 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.259 (Fisher's exact test), Q value = 0.58

Table S6254.  Gene #572: 'TAF12 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
TAF12 MUTATED 2 0 2 0
TAF12 WILD-TYPE 176 183 99 20
'TAF12 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.832 (Fisher's exact test), Q value = 1

Table S6255.  Gene #572: 'TAF12 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
TAF12 MUTATED 2 1 1
TAF12 WILD-TYPE 85 79 99
'TAF12 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0551 (Fisher's exact test), Q value = 0.26

Table S6256.  Gene #572: 'TAF12 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
TAF12 MUTATED 0 0 3
TAF12 WILD-TYPE 89 160 135
'TAF12 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.3 (Fisher's exact test), Q value = 0.63

Table S6257.  Gene #572: 'TAF12 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
TAF12 MUTATED 3 0 0
TAF12 WILD-TYPE 179 133 72
'TAF12 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0389 (Fisher's exact test), Q value = 0.21

Table S6258.  Gene #572: 'TAF12 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
TAF12 MUTATED 0 2 2 0
TAF12 WILD-TYPE 112 94 90 186

Figure S1866.  Get High-res Image Gene #572: 'TAF12 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'TAF12 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.059 (Fisher's exact test), Q value = 0.27

Table S6259.  Gene #572: 'TAF12 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
TAF12 MUTATED 0 1 0 1 2 0 0
TAF12 WILD-TYPE 60 49 49 39 61 125 99
'TAF12 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0284 (Fisher's exact test), Q value = 0.17

Table S6260.  Gene #572: 'TAF12 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
TAF12 MUTATED 4 0 0 0
TAF12 WILD-TYPE 126 78 68 196

Figure S1867.  Get High-res Image Gene #572: 'TAF12 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'TAF12 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.165 (Fisher's exact test), Q value = 0.46

Table S6261.  Gene #572: 'TAF12 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
TAF12 MUTATED 2 0 0 1 0 1 0 0 0
TAF12 WILD-TYPE 38 62 28 79 69 47 43 28 74
'ZNF473 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.136 (Fisher's exact test), Q value = 0.41

Table S6262.  Gene #573: 'ZNF473 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ZNF473 MUTATED 3 0 1 2
ZNF473 WILD-TYPE 43 58 63 41
'ZNF473 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.337 (Fisher's exact test), Q value = 0.66

Table S6263.  Gene #573: 'ZNF473 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ZNF473 MUTATED 3 2 1
ZNF473 WILD-TYPE 48 81 76
'ZNF473 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.186 (Fisher's exact test), Q value = 0.49

Table S6264.  Gene #573: 'ZNF473 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ZNF473 MUTATED 10 5 1 0
ZNF473 WILD-TYPE 168 178 100 20
'ZNF473 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.369 (Fisher's exact test), Q value = 0.7

Table S6265.  Gene #573: 'ZNF473 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ZNF473 MUTATED 4 1 5
ZNF473 WILD-TYPE 83 79 95
'ZNF473 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.295 (Fisher's exact test), Q value = 0.62

Table S6266.  Gene #573: 'ZNF473 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ZNF473 MUTATED 1 5 7
ZNF473 WILD-TYPE 88 155 131
'ZNF473 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.934 (Fisher's exact test), Q value = 1

Table S6267.  Gene #573: 'ZNF473 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ZNF473 MUTATED 7 4 2
ZNF473 WILD-TYPE 175 129 70
'ZNF473 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.927 (Fisher's exact test), Q value = 1

Table S6268.  Gene #573: 'ZNF473 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ZNF473 MUTATED 3 3 4 6
ZNF473 WILD-TYPE 109 93 88 180
'ZNF473 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.689 (Fisher's exact test), Q value = 0.97

Table S6269.  Gene #573: 'ZNF473 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ZNF473 MUTATED 4 2 2 1 2 2 3
ZNF473 WILD-TYPE 56 48 47 39 61 123 96
'ZNF473 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.869 (Fisher's exact test), Q value = 1

Table S6270.  Gene #573: 'ZNF473 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ZNF473 MUTATED 5 3 2 5
ZNF473 WILD-TYPE 125 75 66 191
'ZNF473 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.378 (Fisher's exact test), Q value = 0.71

Table S6271.  Gene #573: 'ZNF473 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ZNF473 MUTATED 4 2 1 2 3 0 1 1 1
ZNF473 WILD-TYPE 36 60 27 78 66 48 42 27 73
'ZNF473 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.144 (Fisher's exact test), Q value = 0.42

Table S6272.  Gene #573: 'ZNF473 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
ZNF473 MUTATED 3 0 0 1
ZNF473 WILD-TYPE 30 31 27 18
'ZNF473 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.428 (Fisher's exact test), Q value = 0.76

Table S6273.  Gene #573: 'ZNF473 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
ZNF473 MUTATED 4 0 0 0
ZNF473 WILD-TYPE 50 10 24 22
'ENPP3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00829 (Fisher's exact test), Q value = 0.085

Table S6274.  Gene #574: 'ENPP3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ENPP3 MUTATED 0 0 0 3
ENPP3 WILD-TYPE 46 58 64 40

Figure S1868.  Get High-res Image Gene #574: 'ENPP3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'ENPP3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.186 (Fisher's exact test), Q value = 0.49

Table S6275.  Gene #574: 'ENPP3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ENPP3 MUTATED 2 0 1
ENPP3 WILD-TYPE 49 83 76
'ENPP3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00218 (Fisher's exact test), Q value = 0.04

Table S6276.  Gene #574: 'ENPP3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ENPP3 MUTATED 10 0 1 0
ENPP3 WILD-TYPE 168 183 100 20

Figure S1869.  Get High-res Image Gene #574: 'ENPP3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ENPP3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.078 (Fisher's exact test), Q value = 0.3

Table S6277.  Gene #574: 'ENPP3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ENPP3 MUTATED 5 0 3
ENPP3 WILD-TYPE 82 80 97
'ENPP3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.603 (Fisher's exact test), Q value = 0.91

Table S6278.  Gene #574: 'ENPP3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ENPP3 MUTATED 1 4 5
ENPP3 WILD-TYPE 88 156 133
'ENPP3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.693 (Fisher's exact test), Q value = 0.97

Table S6279.  Gene #574: 'ENPP3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ENPP3 MUTATED 6 2 2
ENPP3 WILD-TYPE 176 131 70
'ENPP3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.329 (Fisher's exact test), Q value = 0.66

Table S6280.  Gene #574: 'ENPP3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ENPP3 MUTATED 1 3 4 3
ENPP3 WILD-TYPE 111 93 88 183
'ENPP3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.007 (Fisher's exact test), Q value = 0.077

Table S6281.  Gene #574: 'ENPP3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ENPP3 MUTATED 1 0 5 1 2 0 2
ENPP3 WILD-TYPE 59 50 44 39 61 125 97

Figure S1870.  Get High-res Image Gene #574: 'ENPP3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ENPP3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.291 (Fisher's exact test), Q value = 0.62

Table S6282.  Gene #574: 'ENPP3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ENPP3 MUTATED 4 3 0 3
ENPP3 WILD-TYPE 126 75 68 193
'ENPP3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0654 (Fisher's exact test), Q value = 0.28

Table S6283.  Gene #574: 'ENPP3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ENPP3 MUTATED 2 2 0 1 5 0 0 0 0
ENPP3 WILD-TYPE 38 60 28 79 64 48 43 28 74
'ENPP3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.135 (Fisher's exact test), Q value = 0.41

Table S6284.  Gene #574: 'ENPP3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
ENPP3 MUTATED 1 0 0 2
ENPP3 WILD-TYPE 32 31 27 17
'ENPP3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.449 (Fisher's exact test), Q value = 0.77

Table S6285.  Gene #574: 'ENPP3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
ENPP3 MUTATED 1 0 2 0
ENPP3 WILD-TYPE 53 10 22 22
'OR4N4 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00375 (Fisher's exact test), Q value = 0.056

Table S6286.  Gene #575: 'OR4N4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
OR4N4 MUTATED 1 0 0 4
OR4N4 WILD-TYPE 45 58 64 39

Figure S1871.  Get High-res Image Gene #575: 'OR4N4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'OR4N4 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.639 (Fisher's exact test), Q value = 0.93

Table S6287.  Gene #575: 'OR4N4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
OR4N4 MUTATED 2 1 2
OR4N4 WILD-TYPE 49 82 75
'OR4N4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.246 (Fisher's exact test), Q value = 0.57

Table S6288.  Gene #575: 'OR4N4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
OR4N4 MUTATED 11 5 2 0
OR4N4 WILD-TYPE 167 178 99 20
'OR4N4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S6289.  Gene #575: 'OR4N4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
OR4N4 MUTATED 4 4 5
OR4N4 WILD-TYPE 83 76 95
'OR4N4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.347 (Fisher's exact test), Q value = 0.68

Table S6290.  Gene #575: 'OR4N4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
OR4N4 MUTATED 4 4 8
OR4N4 WILD-TYPE 85 156 130
'OR4N4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.332 (Fisher's exact test), Q value = 0.66

Table S6291.  Gene #575: 'OR4N4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
OR4N4 MUTATED 9 3 4
OR4N4 WILD-TYPE 173 130 68
'OR4N4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.677 (Fisher's exact test), Q value = 0.96

Table S6292.  Gene #575: 'OR4N4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
OR4N4 MUTATED 5 5 3 5
OR4N4 WILD-TYPE 107 91 89 181
'OR4N4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0504 (Fisher's exact test), Q value = 0.24

Table S6293.  Gene #575: 'OR4N4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
OR4N4 MUTATED 3 2 2 3 4 0 4
OR4N4 WILD-TYPE 57 48 47 37 59 125 95
'OR4N4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.194 (Fisher's exact test), Q value = 0.5

Table S6294.  Gene #575: 'OR4N4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
OR4N4 MUTATED 6 2 5 4
OR4N4 WILD-TYPE 124 76 63 192
'OR4N4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.181 (Fisher's exact test), Q value = 0.48

Table S6295.  Gene #575: 'OR4N4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
OR4N4 MUTATED 1 3 3 2 3 2 3 0 0
OR4N4 WILD-TYPE 39 59 25 78 66 46 40 28 74
'OR4N4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.623 (Fisher's exact test), Q value = 0.92

Table S6296.  Gene #575: 'OR4N4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
OR4N4 MUTATED 2 3 2 0
OR4N4 WILD-TYPE 31 28 25 19
'OR4N4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0999 (Fisher's exact test), Q value = 0.35

Table S6297.  Gene #575: 'OR4N4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
OR4N4 MUTATED 1 1 2 3
OR4N4 WILD-TYPE 53 9 22 19
'CHEK2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.127 (Fisher's exact test), Q value = 0.4

Table S6298.  Gene #576: 'CHEK2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
CHEK2 MUTATED 7 1 1 0
CHEK2 WILD-TYPE 171 182 100 20
'CHEK2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.198 (Fisher's exact test), Q value = 0.5

Table S6299.  Gene #576: 'CHEK2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
CHEK2 MUTATED 5 2 1
CHEK2 WILD-TYPE 82 78 99
'CHEK2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00127 (Fisher's exact test), Q value = 0.029

Table S6300.  Gene #576: 'CHEK2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
CHEK2 MUTATED 0 1 9
CHEK2 WILD-TYPE 89 159 129

Figure S1872.  Get High-res Image Gene #576: 'CHEK2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'CHEK2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0305 (Fisher's exact test), Q value = 0.18

Table S6301.  Gene #576: 'CHEK2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
CHEK2 MUTATED 9 1 0
CHEK2 WILD-TYPE 173 132 72

Figure S1873.  Get High-res Image Gene #576: 'CHEK2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'CHEK2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.343 (Fisher's exact test), Q value = 0.67

Table S6302.  Gene #576: 'CHEK2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
CHEK2 MUTATED 2 2 4 2
CHEK2 WILD-TYPE 110 94 88 184
'CHEK2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0337 (Fisher's exact test), Q value = 0.19

Table S6303.  Gene #576: 'CHEK2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
CHEK2 MUTATED 2 1 4 0 1 0 2
CHEK2 WILD-TYPE 58 49 45 40 62 125 97

Figure S1874.  Get High-res Image Gene #576: 'CHEK2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CHEK2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.321 (Fisher's exact test), Q value = 0.65

Table S6304.  Gene #576: 'CHEK2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
CHEK2 MUTATED 2 3 2 2
CHEK2 WILD-TYPE 128 75 66 194
'CHEK2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.101 (Fisher's exact test), Q value = 0.35

Table S6305.  Gene #576: 'CHEK2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
CHEK2 MUTATED 1 3 0 0 3 0 2 0 0
CHEK2 WILD-TYPE 39 59 28 80 66 48 41 28 74
'GTF2IRD2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.527 (Fisher's exact test), Q value = 0.85

Table S6306.  Gene #577: 'GTF2IRD2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
GTF2IRD2 MUTATED 4 1 1 0
GTF2IRD2 WILD-TYPE 174 182 100 20
'GTF2IRD2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S6307.  Gene #577: 'GTF2IRD2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
GTF2IRD2 MUTATED 2 2 2
GTF2IRD2 WILD-TYPE 85 78 98
'GTF2IRD2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00477 (Fisher's exact test), Q value = 0.062

Table S6308.  Gene #577: 'GTF2IRD2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
GTF2IRD2 MUTATED 0 0 6
GTF2IRD2 WILD-TYPE 89 160 132

Figure S1875.  Get High-res Image Gene #577: 'GTF2IRD2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'GTF2IRD2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0412 (Fisher's exact test), Q value = 0.21

Table S6309.  Gene #577: 'GTF2IRD2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
GTF2IRD2 MUTATED 6 0 0
GTF2IRD2 WILD-TYPE 176 133 72

Figure S1876.  Get High-res Image Gene #577: 'GTF2IRD2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'GTF2IRD2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.045 (Fisher's exact test), Q value = 0.23

Table S6310.  Gene #577: 'GTF2IRD2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
GTF2IRD2 MUTATED 1 2 3 0
GTF2IRD2 WILD-TYPE 111 94 89 186

Figure S1877.  Get High-res Image Gene #577: 'GTF2IRD2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'GTF2IRD2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0114 (Fisher's exact test), Q value = 0.1

Table S6311.  Gene #577: 'GTF2IRD2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
GTF2IRD2 MUTATED 0 1 2 0 3 0 0
GTF2IRD2 WILD-TYPE 60 49 47 40 60 125 99

Figure S1878.  Get High-res Image Gene #577: 'GTF2IRD2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'GTF2IRD2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.18 (Fisher's exact test), Q value = 0.48

Table S6312.  Gene #577: 'GTF2IRD2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
GTF2IRD2 MUTATED 4 1 0 1
GTF2IRD2 WILD-TYPE 126 77 68 195
'GTF2IRD2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.409 (Fisher's exact test), Q value = 0.73

Table S6313.  Gene #577: 'GTF2IRD2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
GTF2IRD2 MUTATED 2 2 0 1 1 0 0 0 0
GTF2IRD2 WILD-TYPE 38 60 28 79 68 48 43 28 74
'AKAP9 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 4e-05 (Fisher's exact test), Q value = 0.0027

Table S6314.  Gene #578: 'AKAP9 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
AKAP9 MUTATED 9 0 1 7
AKAP9 WILD-TYPE 37 58 63 36

Figure S1879.  Get High-res Image Gene #578: 'AKAP9 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'AKAP9 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00091 (Fisher's exact test), Q value = 0.023

Table S6315.  Gene #578: 'AKAP9 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
AKAP9 MUTATED 11 3 3
AKAP9 WILD-TYPE 40 80 74

Figure S1880.  Get High-res Image Gene #578: 'AKAP9 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'AKAP9 MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S6316.  Gene #578: 'AKAP9 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
AKAP9 MUTATED 37 7 5 1
AKAP9 WILD-TYPE 141 176 96 19

Figure S1881.  Get High-res Image Gene #578: 'AKAP9 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'AKAP9 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.518 (Fisher's exact test), Q value = 0.84

Table S6317.  Gene #578: 'AKAP9 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
AKAP9 MUTATED 12 7 14
AKAP9 WILD-TYPE 75 73 86
'AKAP9 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.577 (Fisher's exact test), Q value = 0.88

Table S6318.  Gene #578: 'AKAP9 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
AKAP9 MUTATED 7 16 17
AKAP9 WILD-TYPE 82 144 121
'AKAP9 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.953 (Fisher's exact test), Q value = 1

Table S6319.  Gene #578: 'AKAP9 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
AKAP9 MUTATED 19 13 8
AKAP9 WILD-TYPE 163 120 64
'AKAP9 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.052 (Fisher's exact test), Q value = 0.25

Table S6320.  Gene #578: 'AKAP9 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
AKAP9 MUTATED 6 16 11 17
AKAP9 WILD-TYPE 106 80 81 169
'AKAP9 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00025 (Fisher's exact test), Q value = 0.0096

Table S6321.  Gene #578: 'AKAP9 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
AKAP9 MUTATED 4 3 12 6 7 3 15
AKAP9 WILD-TYPE 56 47 37 34 56 122 84

Figure S1882.  Get High-res Image Gene #578: 'AKAP9 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'AKAP9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.12 (Fisher's exact test), Q value = 0.39

Table S6322.  Gene #578: 'AKAP9 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
AKAP9 MUTATED 16 10 2 21
AKAP9 WILD-TYPE 114 68 66 175
'AKAP9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00169 (Fisher's exact test), Q value = 0.034

Table S6323.  Gene #578: 'AKAP9 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
AKAP9 MUTATED 6 9 5 5 15 1 3 3 2
AKAP9 WILD-TYPE 34 53 23 75 54 47 40 25 72

Figure S1883.  Get High-res Image Gene #578: 'AKAP9 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'AKAP9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0751 (Fisher's exact test), Q value = 0.29

Table S6324.  Gene #578: 'AKAP9 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
AKAP9 MUTATED 1 3 2 5
AKAP9 WILD-TYPE 32 28 25 14
'AKAP9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.103 (Fisher's exact test), Q value = 0.35

Table S6325.  Gene #578: 'AKAP9 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
AKAP9 MUTATED 9 1 1 0
AKAP9 WILD-TYPE 45 9 23 22
'ABI3BP MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.259 (Fisher's exact test), Q value = 0.58

Table S6326.  Gene #579: 'ABI3BP MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ABI3BP MUTATED 2 0 1 2
ABI3BP WILD-TYPE 44 58 63 41
'ABI3BP MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.212 (Fisher's exact test), Q value = 0.52

Table S6327.  Gene #579: 'ABI3BP MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ABI3BP MUTATED 2 3 0
ABI3BP WILD-TYPE 49 80 77
'ABI3BP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.201 (Fisher's exact test), Q value = 0.51

Table S6328.  Gene #579: 'ABI3BP MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ABI3BP MUTATED 13 5 5 0
ABI3BP WILD-TYPE 165 178 96 20
'ABI3BP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.223 (Fisher's exact test), Q value = 0.54

Table S6329.  Gene #579: 'ABI3BP MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ABI3BP MUTATED 9 3 5
ABI3BP WILD-TYPE 78 77 95
'ABI3BP MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0624 (Fisher's exact test), Q value = 0.27

Table S6330.  Gene #579: 'ABI3BP MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ABI3BP MUTATED 1 7 11
ABI3BP WILD-TYPE 88 153 127
'ABI3BP MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.584 (Fisher's exact test), Q value = 0.89

Table S6331.  Gene #579: 'ABI3BP MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ABI3BP MUTATED 11 6 2
ABI3BP WILD-TYPE 171 127 70
'ABI3BP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.718 (Fisher's exact test), Q value = 0.99

Table S6332.  Gene #579: 'ABI3BP MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ABI3BP MUTATED 6 4 6 7
ABI3BP WILD-TYPE 106 92 86 179
'ABI3BP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.161 (Fisher's exact test), Q value = 0.45

Table S6333.  Gene #579: 'ABI3BP MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ABI3BP MUTATED 5 1 4 0 5 3 5
ABI3BP WILD-TYPE 55 49 45 40 58 122 94
'ABI3BP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.423 (Fisher's exact test), Q value = 0.75

Table S6334.  Gene #579: 'ABI3BP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ABI3BP MUTATED 9 4 3 6
ABI3BP WILD-TYPE 121 74 65 190
'ABI3BP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.565 (Fisher's exact test), Q value = 0.87

Table S6335.  Gene #579: 'ABI3BP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ABI3BP MUTATED 1 5 1 4 5 2 3 0 1
ABI3BP WILD-TYPE 39 57 27 76 64 46 40 28 73
'ABI3BP MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0166 (Fisher's exact test), Q value = 0.13

Table S6336.  Gene #579: 'ABI3BP MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
ABI3BP MUTATED 1 1 0 4
ABI3BP WILD-TYPE 32 30 27 15

Figure S1884.  Get High-res Image Gene #579: 'ABI3BP MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'ABI3BP MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S6337.  Gene #579: 'ABI3BP MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
ABI3BP MUTATED 4 0 1 1
ABI3BP WILD-TYPE 50 10 23 21
'ENTPD4 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.121 (Fisher's exact test), Q value = 0.39

Table S6338.  Gene #580: 'ENTPD4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ENTPD4 MUTATED 2 0 0 1
ENTPD4 WILD-TYPE 44 58 64 42
'ENTPD4 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.251 (Fisher's exact test), Q value = 0.58

Table S6339.  Gene #580: 'ENTPD4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ENTPD4 MUTATED 2 1 0
ENTPD4 WILD-TYPE 49 82 77
'ENTPD4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00564 (Fisher's exact test), Q value = 0.068

Table S6340.  Gene #580: 'ENTPD4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ENTPD4 MUTATED 14 2 2 0
ENTPD4 WILD-TYPE 164 181 99 20

Figure S1885.  Get High-res Image Gene #580: 'ENTPD4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ENTPD4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.433 (Fisher's exact test), Q value = 0.76

Table S6341.  Gene #580: 'ENTPD4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ENTPD4 MUTATED 6 2 5
ENTPD4 WILD-TYPE 81 78 95
'ENTPD4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.199 (Fisher's exact test), Q value = 0.5

Table S6342.  Gene #580: 'ENTPD4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ENTPD4 MUTATED 5 3 7
ENTPD4 WILD-TYPE 84 157 131
'ENTPD4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.887 (Fisher's exact test), Q value = 1

Table S6343.  Gene #580: 'ENTPD4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ENTPD4 MUTATED 7 6 2
ENTPD4 WILD-TYPE 175 127 70
'ENTPD4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.24 (Fisher's exact test), Q value = 0.56

Table S6344.  Gene #580: 'ENTPD4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ENTPD4 MUTATED 3 6 5 4
ENTPD4 WILD-TYPE 109 90 87 182
'ENTPD4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 7e-05 (Fisher's exact test), Q value = 0.0041

Table S6345.  Gene #580: 'ENTPD4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ENTPD4 MUTATED 1 0 8 3 2 0 4
ENTPD4 WILD-TYPE 59 50 41 37 61 125 95

Figure S1886.  Get High-res Image Gene #580: 'ENTPD4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ENTPD4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.129 (Fisher's exact test), Q value = 0.4

Table S6346.  Gene #580: 'ENTPD4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ENTPD4 MUTATED 8 4 0 6
ENTPD4 WILD-TYPE 122 74 68 190
'ENTPD4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0336 (Fisher's exact test), Q value = 0.19

Table S6347.  Gene #580: 'ENTPD4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ENTPD4 MUTATED 3 4 1 0 5 2 1 2 0
ENTPD4 WILD-TYPE 37 58 27 80 64 46 42 26 74

Figure S1887.  Get High-res Image Gene #580: 'ENTPD4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'ENTPD4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0648 (Fisher's exact test), Q value = 0.28

Table S6348.  Gene #580: 'ENTPD4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
ENTPD4 MUTATED 0 2 0 2
ENTPD4 WILD-TYPE 33 29 27 17
'ENTPD4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.87 (Fisher's exact test), Q value = 1

Table S6349.  Gene #580: 'ENTPD4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
ENTPD4 MUTATED 3 0 1 0
ENTPD4 WILD-TYPE 51 10 23 22
'HFE2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.526 (Fisher's exact test), Q value = 0.85

Table S6350.  Gene #581: 'HFE2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
HFE2 MUTATED 4 3 1 1
HFE2 WILD-TYPE 174 180 100 19
'HFE2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.448 (Fisher's exact test), Q value = 0.77

Table S6351.  Gene #581: 'HFE2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
HFE2 MUTATED 1 3 1
HFE2 WILD-TYPE 86 77 99
'HFE2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.695 (Fisher's exact test), Q value = 0.97

Table S6352.  Gene #581: 'HFE2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
HFE2 MUTATED 1 5 3
HFE2 WILD-TYPE 88 155 135
'HFE2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.108 (Fisher's exact test), Q value = 0.36

Table S6353.  Gene #581: 'HFE2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
HFE2 MUTATED 3 6 0
HFE2 WILD-TYPE 179 127 72
'HFE2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.627 (Fisher's exact test), Q value = 0.92

Table S6354.  Gene #581: 'HFE2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
HFE2 MUTATED 4 1 1 4
HFE2 WILD-TYPE 108 95 91 182
'HFE2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.305 (Fisher's exact test), Q value = 0.64

Table S6355.  Gene #581: 'HFE2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
HFE2 MUTATED 3 2 1 1 0 1 2
HFE2 WILD-TYPE 57 48 48 39 63 124 97
'HFE2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.881 (Fisher's exact test), Q value = 1

Table S6356.  Gene #581: 'HFE2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
HFE2 MUTATED 4 1 1 4
HFE2 WILD-TYPE 126 77 67 192
'HFE2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.589 (Fisher's exact test), Q value = 0.89

Table S6357.  Gene #581: 'HFE2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
HFE2 MUTATED 0 1 0 1 3 3 1 0 1
HFE2 WILD-TYPE 40 61 28 79 66 45 42 28 73
'SPCS2 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S6358.  Gene #582: 'SPCS2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
SPCS2 MUTATED 2 2 1 0
SPCS2 WILD-TYPE 176 181 100 20
'SPCS2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.04 (Fisher's exact test), Q value = 0.21

Table S6359.  Gene #582: 'SPCS2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
SPCS2 MUTATED 0 4 1
SPCS2 WILD-TYPE 87 76 99

Figure S1888.  Get High-res Image Gene #582: 'SPCS2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'SPCS2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.298 (Fisher's exact test), Q value = 0.63

Table S6360.  Gene #582: 'SPCS2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
SPCS2 MUTATED 0 4 1
SPCS2 WILD-TYPE 89 156 137
'SPCS2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0287 (Fisher's exact test), Q value = 0.17

Table S6361.  Gene #582: 'SPCS2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
SPCS2 MUTATED 0 4 1
SPCS2 WILD-TYPE 182 129 71

Figure S1889.  Get High-res Image Gene #582: 'SPCS2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'SPCS2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0721 (Fisher's exact test), Q value = 0.29

Table S6362.  Gene #582: 'SPCS2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
SPCS2 MUTATED 3 1 1 0
SPCS2 WILD-TYPE 109 95 91 186
'SPCS2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0786 (Fisher's exact test), Q value = 0.3

Table S6363.  Gene #582: 'SPCS2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
SPCS2 MUTATED 2 1 0 1 1 0 0
SPCS2 WILD-TYPE 58 49 49 39 62 125 99
'SPCS2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0314 (Fisher's exact test), Q value = 0.18

Table S6364.  Gene #582: 'SPCS2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
SPCS2 MUTATED 3 0 2 0
SPCS2 WILD-TYPE 127 78 66 196

Figure S1890.  Get High-res Image Gene #582: 'SPCS2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'SPCS2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00237 (Fisher's exact test), Q value = 0.042

Table S6365.  Gene #582: 'SPCS2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
SPCS2 MUTATED 3 0 0 0 0 0 2 0 0
SPCS2 WILD-TYPE 37 62 28 80 69 48 41 28 74

Figure S1891.  Get High-res Image Gene #582: 'SPCS2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'RAD51AP2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00375 (Fisher's exact test), Q value = 0.056

Table S6366.  Gene #583: 'RAD51AP2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
RAD51AP2 MUTATED 3 0 0 4
RAD51AP2 WILD-TYPE 43 58 64 39

Figure S1892.  Get High-res Image Gene #583: 'RAD51AP2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'RAD51AP2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.545 (Fisher's exact test), Q value = 0.86

Table S6367.  Gene #583: 'RAD51AP2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
RAD51AP2 MUTATED 3 2 2
RAD51AP2 WILD-TYPE 48 81 75
'RAD51AP2 MUTATION STATUS' versus 'CN_CNMF'

P value = 2e-05 (Fisher's exact test), Q value = 0.0017

Table S6368.  Gene #583: 'RAD51AP2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
RAD51AP2 MUTATED 17 0 1 0
RAD51AP2 WILD-TYPE 161 183 100 20

Figure S1893.  Get High-res Image Gene #583: 'RAD51AP2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'RAD51AP2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0108 (Fisher's exact test), Q value = 0.1

Table S6369.  Gene #583: 'RAD51AP2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
RAD51AP2 MUTATED 4 0 9
RAD51AP2 WILD-TYPE 83 80 91

Figure S1894.  Get High-res Image Gene #583: 'RAD51AP2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'RAD51AP2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.109 (Fisher's exact test), Q value = 0.37

Table S6370.  Gene #583: 'RAD51AP2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
RAD51AP2 MUTATED 1 4 9
RAD51AP2 WILD-TYPE 88 156 129
'RAD51AP2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.768 (Fisher's exact test), Q value = 1

Table S6371.  Gene #583: 'RAD51AP2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
RAD51AP2 MUTATED 8 4 2
RAD51AP2 WILD-TYPE 174 129 70
'RAD51AP2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0567 (Fisher's exact test), Q value = 0.26

Table S6372.  Gene #583: 'RAD51AP2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
RAD51AP2 MUTATED 1 8 3 7
RAD51AP2 WILD-TYPE 111 88 89 179
'RAD51AP2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00297 (Fisher's exact test), Q value = 0.049

Table S6373.  Gene #583: 'RAD51AP2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
RAD51AP2 MUTATED 2 2 7 2 0 1 5
RAD51AP2 WILD-TYPE 58 48 42 38 63 124 94

Figure S1895.  Get High-res Image Gene #583: 'RAD51AP2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'RAD51AP2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.919 (Fisher's exact test), Q value = 1

Table S6374.  Gene #583: 'RAD51AP2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
RAD51AP2 MUTATED 5 2 2 9
RAD51AP2 WILD-TYPE 125 76 66 187
'RAD51AP2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.452 (Fisher's exact test), Q value = 0.78

Table S6375.  Gene #583: 'RAD51AP2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
RAD51AP2 MUTATED 2 3 2 4 3 0 3 0 1
RAD51AP2 WILD-TYPE 38 59 26 76 66 48 40 28 73
'RAD51AP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.462 (Fisher's exact test), Q value = 0.79

Table S6376.  Gene #583: 'RAD51AP2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
RAD51AP2 MUTATED 1 0 2 1
RAD51AP2 WILD-TYPE 32 31 25 18
'RAD51AP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S6377.  Gene #583: 'RAD51AP2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
RAD51AP2 MUTATED 2 0 1 1
RAD51AP2 WILD-TYPE 52 10 23 21
'BMPR1A MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0267 (Fisher's exact test), Q value = 0.17

Table S6378.  Gene #584: 'BMPR1A MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
BMPR1A MUTATED 3 0 0 2
BMPR1A WILD-TYPE 43 58 64 41

Figure S1896.  Get High-res Image Gene #584: 'BMPR1A MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'BMPR1A MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00665 (Fisher's exact test), Q value = 0.075

Table S6379.  Gene #584: 'BMPR1A MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
BMPR1A MUTATED 4 0 1
BMPR1A WILD-TYPE 47 83 76

Figure S1897.  Get High-res Image Gene #584: 'BMPR1A MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'BMPR1A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00052 (Fisher's exact test), Q value = 0.016

Table S6380.  Gene #584: 'BMPR1A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
BMPR1A MUTATED 11 0 5 2
BMPR1A WILD-TYPE 167 183 96 18

Figure S1898.  Get High-res Image Gene #584: 'BMPR1A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'BMPR1A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0613 (Fisher's exact test), Q value = 0.27

Table S6381.  Gene #584: 'BMPR1A MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
BMPR1A MUTATED 8 1 4
BMPR1A WILD-TYPE 79 79 96
'BMPR1A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.301 (Fisher's exact test), Q value = 0.63

Table S6382.  Gene #584: 'BMPR1A MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
BMPR1A MUTATED 2 4 8
BMPR1A WILD-TYPE 87 156 130
'BMPR1A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.17 (Fisher's exact test), Q value = 0.47

Table S6383.  Gene #584: 'BMPR1A MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
BMPR1A MUTATED 10 2 2
BMPR1A WILD-TYPE 172 131 70
'BMPR1A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.735 (Fisher's exact test), Q value = 1

Table S6384.  Gene #584: 'BMPR1A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
BMPR1A MUTATED 3 5 4 6
BMPR1A WILD-TYPE 109 91 88 180
'BMPR1A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0173 (Fisher's exact test), Q value = 0.13

Table S6385.  Gene #584: 'BMPR1A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
BMPR1A MUTATED 2 2 5 1 2 0 6
BMPR1A WILD-TYPE 58 48 44 39 61 125 93

Figure S1899.  Get High-res Image Gene #584: 'BMPR1A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'BMPR1A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.749 (Fisher's exact test), Q value = 1

Table S6386.  Gene #584: 'BMPR1A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
BMPR1A MUTATED 7 3 2 6
BMPR1A WILD-TYPE 123 75 66 190
'BMPR1A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.162 (Fisher's exact test), Q value = 0.45

Table S6387.  Gene #584: 'BMPR1A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
BMPR1A MUTATED 3 3 1 1 6 0 2 1 1
BMPR1A WILD-TYPE 37 59 27 79 63 48 41 27 73
'BMPR1A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.593 (Fisher's exact test), Q value = 0.9

Table S6388.  Gene #584: 'BMPR1A MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
BMPR1A MUTATED 2 0 1 1
BMPR1A WILD-TYPE 31 31 26 18
'BMPR1A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.767 (Fisher's exact test), Q value = 1

Table S6389.  Gene #584: 'BMPR1A MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
BMPR1A MUTATED 3 0 0 1
BMPR1A WILD-TYPE 51 10 24 21
'MLL4 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.161 (Fisher's exact test), Q value = 0.45

Table S6390.  Gene #585: 'MLL4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
MLL4 MUTATED 5 1 2 3
MLL4 WILD-TYPE 41 57 62 40
'MLL4 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.275 (Fisher's exact test), Q value = 0.6

Table S6391.  Gene #585: 'MLL4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
MLL4 MUTATED 5 3 3
MLL4 WILD-TYPE 46 80 74
'MLL4 MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S6392.  Gene #585: 'MLL4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
MLL4 MUTATED 30 1 6 2
MLL4 WILD-TYPE 148 182 95 18

Figure S1900.  Get High-res Image Gene #585: 'MLL4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'MLL4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00031 (Fisher's exact test), Q value = 0.011

Table S6393.  Gene #585: 'MLL4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
MLL4 MUTATED 6 2 20
MLL4 WILD-TYPE 81 78 80

Figure S1901.  Get High-res Image Gene #585: 'MLL4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'MLL4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.141 (Fisher's exact test), Q value = 0.42

Table S6394.  Gene #585: 'MLL4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
MLL4 MUTATED 5 11 17
MLL4 WILD-TYPE 84 149 121
'MLL4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.719 (Fisher's exact test), Q value = 0.99

Table S6395.  Gene #585: 'MLL4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
MLL4 MUTATED 17 9 7
MLL4 WILD-TYPE 165 124 65
'MLL4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00063 (Fisher's exact test), Q value = 0.018

Table S6396.  Gene #585: 'MLL4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
MLL4 MUTATED 4 18 7 10
MLL4 WILD-TYPE 108 78 85 176

Figure S1902.  Get High-res Image Gene #585: 'MLL4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'MLL4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S6397.  Gene #585: 'MLL4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
MLL4 MUTATED 4 4 19 2 0 3 7
MLL4 WILD-TYPE 56 46 30 38 63 122 92

Figure S1903.  Get High-res Image Gene #585: 'MLL4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'MLL4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00101 (Fisher's exact test), Q value = 0.025

Table S6398.  Gene #585: 'MLL4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
MLL4 MUTATED 20 2 1 16
MLL4 WILD-TYPE 110 76 67 180

Figure S1904.  Get High-res Image Gene #585: 'MLL4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'MLL4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S6399.  Gene #585: 'MLL4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
MLL4 MUTATED 2 5 5 2 19 2 2 1 1
MLL4 WILD-TYPE 38 57 23 78 50 46 41 27 73

Figure S1905.  Get High-res Image Gene #585: 'MLL4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'MLL4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00187 (Fisher's exact test), Q value = 0.036

Table S6400.  Gene #585: 'MLL4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
MLL4 MUTATED 4 0 1 6
MLL4 WILD-TYPE 29 31 26 13

Figure S1906.  Get High-res Image Gene #585: 'MLL4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'MLL4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.895 (Fisher's exact test), Q value = 1

Table S6401.  Gene #585: 'MLL4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
MLL4 MUTATED 6 0 3 2
MLL4 WILD-TYPE 48 10 21 20
'KIF21A MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.038 (Fisher's exact test), Q value = 0.2

Table S6402.  Gene #586: 'KIF21A MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
KIF21A MUTATED 4 0 1 3
KIF21A WILD-TYPE 42 58 63 40

Figure S1907.  Get High-res Image Gene #586: 'KIF21A MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'KIF21A MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.308 (Fisher's exact test), Q value = 0.64

Table S6403.  Gene #586: 'KIF21A MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
KIF21A MUTATED 4 2 2
KIF21A WILD-TYPE 47 81 75
'KIF21A MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S6404.  Gene #586: 'KIF21A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
KIF21A MUTATED 20 0 8 0
KIF21A WILD-TYPE 158 183 93 20

Figure S1908.  Get High-res Image Gene #586: 'KIF21A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'KIF21A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.245 (Fisher's exact test), Q value = 0.57

Table S6405.  Gene #586: 'KIF21A MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
KIF21A MUTATED 8 3 10
KIF21A WILD-TYPE 79 77 90
'KIF21A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0288 (Fisher's exact test), Q value = 0.17

Table S6406.  Gene #586: 'KIF21A MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
KIF21A MUTATED 2 5 13
KIF21A WILD-TYPE 87 155 125

Figure S1909.  Get High-res Image Gene #586: 'KIF21A MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'KIF21A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.302 (Fisher's exact test), Q value = 0.63

Table S6407.  Gene #586: 'KIF21A MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
KIF21A MUTATED 13 5 2
KIF21A WILD-TYPE 169 128 70
'KIF21A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0519 (Fisher's exact test), Q value = 0.25

Table S6408.  Gene #586: 'KIF21A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
KIF21A MUTATED 3 10 8 8
KIF21A WILD-TYPE 109 86 84 178
'KIF21A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00018 (Fisher's exact test), Q value = 0.0078

Table S6409.  Gene #586: 'KIF21A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
KIF21A MUTATED 1 4 11 1 5 2 5
KIF21A WILD-TYPE 59 46 38 39 58 123 94

Figure S1910.  Get High-res Image Gene #586: 'KIF21A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'KIF21A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.319 (Fisher's exact test), Q value = 0.65

Table S6410.  Gene #586: 'KIF21A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
KIF21A MUTATED 12 4 2 10
KIF21A WILD-TYPE 118 74 66 186
'KIF21A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.006 (Fisher's exact test), Q value = 0.071

Table S6411.  Gene #586: 'KIF21A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
KIF21A MUTATED 3 5 2 5 11 0 1 0 1
KIF21A WILD-TYPE 37 57 26 75 58 48 42 28 73

Figure S1911.  Get High-res Image Gene #586: 'KIF21A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'KIF21A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.143 (Fisher's exact test), Q value = 0.42

Table S6412.  Gene #586: 'KIF21A MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
KIF21A MUTATED 2 0 2 3
KIF21A WILD-TYPE 31 31 25 16
'KIF21A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.64 (Fisher's exact test), Q value = 0.93

Table S6413.  Gene #586: 'KIF21A MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
KIF21A MUTATED 3 0 3 1
KIF21A WILD-TYPE 51 10 21 21
'ZNF286A MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0638 (Fisher's exact test), Q value = 0.27

Table S6414.  Gene #587: 'ZNF286A MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ZNF286A MUTATED 1 0 0 2
ZNF286A WILD-TYPE 45 58 64 41
'ZNF286A MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.789 (Fisher's exact test), Q value = 1

Table S6415.  Gene #587: 'ZNF286A MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ZNF286A MUTATED 0 2 1
ZNF286A WILD-TYPE 51 81 76
'ZNF286A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0117 (Fisher's exact test), Q value = 0.11

Table S6416.  Gene #587: 'ZNF286A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ZNF286A MUTATED 8 0 1 0
ZNF286A WILD-TYPE 170 183 100 20

Figure S1912.  Get High-res Image Gene #587: 'ZNF286A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ZNF286A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0279 (Fisher's exact test), Q value = 0.17

Table S6417.  Gene #587: 'ZNF286A MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ZNF286A MUTATED 5 0 1
ZNF286A WILD-TYPE 82 80 99

Figure S1913.  Get High-res Image Gene #587: 'ZNF286A MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'ZNF286A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.66 (Fisher's exact test), Q value = 0.95

Table S6418.  Gene #587: 'ZNF286A MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ZNF286A MUTATED 2 2 4
ZNF286A WILD-TYPE 87 158 134
'ZNF286A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.725 (Fisher's exact test), Q value = 0.99

Table S6419.  Gene #587: 'ZNF286A MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ZNF286A MUTATED 3 3 2
ZNF286A WILD-TYPE 179 130 70
'ZNF286A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.12 (Fisher's exact test), Q value = 0.39

Table S6420.  Gene #587: 'ZNF286A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ZNF286A MUTATED 0 2 4 3
ZNF286A WILD-TYPE 112 94 88 183
'ZNF286A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.499 (Fisher's exact test), Q value = 0.83

Table S6421.  Gene #587: 'ZNF286A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ZNF286A MUTATED 1 2 2 1 1 1 1
ZNF286A WILD-TYPE 59 48 47 39 62 124 98
'ZNF286A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.123 (Fisher's exact test), Q value = 0.39

Table S6422.  Gene #587: 'ZNF286A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ZNF286A MUTATED 1 4 0 4
ZNF286A WILD-TYPE 129 74 68 192
'ZNF286A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.723 (Fisher's exact test), Q value = 0.99

Table S6423.  Gene #587: 'ZNF286A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ZNF286A MUTATED 1 3 1 2 1 0 0 0 1
ZNF286A WILD-TYPE 39 59 27 78 68 48 43 28 73
'ZNF286A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.358 (Fisher's exact test), Q value = 0.69

Table S6424.  Gene #587: 'ZNF286A MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
ZNF286A MUTATED 1 1 0 2
ZNF286A WILD-TYPE 32 30 27 17
'ZNF286A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.767 (Fisher's exact test), Q value = 1

Table S6425.  Gene #587: 'ZNF286A MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
ZNF286A MUTATED 3 0 0 1
ZNF286A WILD-TYPE 51 10 24 21
'AK3L1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.123 (Fisher's exact test), Q value = 0.39

Table S6426.  Gene #588: 'AK3L1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
AK3L1 MUTATED 4 0 0 0
AK3L1 WILD-TYPE 174 183 101 20
'AK3L1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.555 (Fisher's exact test), Q value = 0.87

Table S6427.  Gene #588: 'AK3L1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
AK3L1 MUTATED 2 0 2
AK3L1 WILD-TYPE 85 80 98
'AK3L1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0179 (Fisher's exact test), Q value = 0.13

Table S6428.  Gene #588: 'AK3L1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
AK3L1 MUTATED 0 0 4
AK3L1 WILD-TYPE 89 160 134

Figure S1914.  Get High-res Image Gene #588: 'AK3L1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'AK3L1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.829 (Fisher's exact test), Q value = 1

Table S6429.  Gene #588: 'AK3L1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
AK3L1 MUTATED 2 2 0
AK3L1 WILD-TYPE 180 131 72
'AK3L1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.14 (Fisher's exact test), Q value = 0.42

Table S6430.  Gene #588: 'AK3L1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
AK3L1 MUTATED 1 1 2 0
AK3L1 WILD-TYPE 111 95 90 186
'AK3L1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.126 (Fisher's exact test), Q value = 0.39

Table S6431.  Gene #588: 'AK3L1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
AK3L1 MUTATED 0 1 1 1 1 0 0
AK3L1 WILD-TYPE 60 49 48 39 62 125 99
'AK3L1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0795 (Fisher's exact test), Q value = 0.3

Table S6432.  Gene #588: 'AK3L1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
AK3L1 MUTATED 2 2 0 0
AK3L1 WILD-TYPE 128 76 68 196
'AK3L1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.231 (Fisher's exact test), Q value = 0.55

Table S6433.  Gene #588: 'AK3L1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
AK3L1 MUTATED 1 2 0 0 0 1 0 0 0
AK3L1 WILD-TYPE 39 60 28 80 69 47 43 28 74
'PIK3C3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00347 (Fisher's exact test), Q value = 0.054

Table S6434.  Gene #589: 'PIK3C3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
PIK3C3 MUTATED 1 0 0 4
PIK3C3 WILD-TYPE 45 58 64 39

Figure S1915.  Get High-res Image Gene #589: 'PIK3C3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'PIK3C3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00671 (Fisher's exact test), Q value = 0.075

Table S6435.  Gene #589: 'PIK3C3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
PIK3C3 MUTATED 4 0 1
PIK3C3 WILD-TYPE 47 83 76

Figure S1916.  Get High-res Image Gene #589: 'PIK3C3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'PIK3C3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00504 (Fisher's exact test), Q value = 0.064

Table S6436.  Gene #589: 'PIK3C3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
PIK3C3 MUTATED 18 7 1 0
PIK3C3 WILD-TYPE 160 176 100 20

Figure S1917.  Get High-res Image Gene #589: 'PIK3C3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'PIK3C3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.675 (Fisher's exact test), Q value = 0.96

Table S6437.  Gene #589: 'PIK3C3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
PIK3C3 MUTATED 8 6 6
PIK3C3 WILD-TYPE 79 74 94
'PIK3C3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.204 (Fisher's exact test), Q value = 0.51

Table S6438.  Gene #589: 'PIK3C3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
PIK3C3 MUTATED 5 6 12
PIK3C3 WILD-TYPE 84 154 126
'PIK3C3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.217 (Fisher's exact test), Q value = 0.53

Table S6439.  Gene #589: 'PIK3C3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
PIK3C3 MUTATED 15 6 2
PIK3C3 WILD-TYPE 167 127 70
'PIK3C3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.339 (Fisher's exact test), Q value = 0.67

Table S6440.  Gene #589: 'PIK3C3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
PIK3C3 MUTATED 5 6 8 7
PIK3C3 WILD-TYPE 107 90 84 179
'PIK3C3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00198 (Fisher's exact test), Q value = 0.037

Table S6441.  Gene #589: 'PIK3C3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
PIK3C3 MUTATED 4 3 9 1 3 1 5
PIK3C3 WILD-TYPE 56 47 40 39 60 124 94

Figure S1918.  Get High-res Image Gene #589: 'PIK3C3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'PIK3C3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.531 (Fisher's exact test), Q value = 0.85

Table S6442.  Gene #589: 'PIK3C3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
PIK3C3 MUTATED 9 6 3 8
PIK3C3 WILD-TYPE 121 72 65 188
'PIK3C3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00072 (Fisher's exact test), Q value = 0.02

Table S6443.  Gene #589: 'PIK3C3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
PIK3C3 MUTATED 2 8 1 1 9 1 4 0 0
PIK3C3 WILD-TYPE 38 54 27 79 60 47 39 28 74

Figure S1919.  Get High-res Image Gene #589: 'PIK3C3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'PIK3C3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0127 (Fisher's exact test), Q value = 0.11

Table S6444.  Gene #589: 'PIK3C3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
PIK3C3 MUTATED 0 1 1 4
PIK3C3 WILD-TYPE 33 30 26 15

Figure S1920.  Get High-res Image Gene #589: 'PIK3C3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'PIK3C3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.787 (Fisher's exact test), Q value = 1

Table S6445.  Gene #589: 'PIK3C3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
PIK3C3 MUTATED 3 1 1 1
PIK3C3 WILD-TYPE 51 9 23 21
'POLE MUTATION STATUS' versus 'MRNA_CNMF'

P value = 7e-05 (Fisher's exact test), Q value = 0.0041

Table S6446.  Gene #590: 'POLE MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
POLE MUTATED 5 0 1 9
POLE WILD-TYPE 41 58 63 34

Figure S1921.  Get High-res Image Gene #590: 'POLE MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'POLE MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00108 (Fisher's exact test), Q value = 0.026

Table S6447.  Gene #590: 'POLE MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
POLE MUTATED 10 2 3
POLE WILD-TYPE 41 81 74

Figure S1922.  Get High-res Image Gene #590: 'POLE MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'POLE MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S6448.  Gene #590: 'POLE MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
POLE MUTATED 26 2 4 1
POLE WILD-TYPE 152 181 97 19

Figure S1923.  Get High-res Image Gene #590: 'POLE MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'POLE MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.284 (Fisher's exact test), Q value = 0.61

Table S6449.  Gene #590: 'POLE MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
POLE MUTATED 9 3 7
POLE WILD-TYPE 78 77 93
'POLE MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.248 (Fisher's exact test), Q value = 0.57

Table S6450.  Gene #590: 'POLE MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
POLE MUTATED 4 8 13
POLE WILD-TYPE 85 152 125
'POLE MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.711 (Fisher's exact test), Q value = 0.98

Table S6451.  Gene #590: 'POLE MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
POLE MUTATED 14 7 4
POLE WILD-TYPE 168 126 68
'POLE MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.368 (Fisher's exact test), Q value = 0.7

Table S6452.  Gene #590: 'POLE MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
POLE MUTATED 4 8 6 16
POLE WILD-TYPE 108 88 86 170
'POLE MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00037 (Fisher's exact test), Q value = 0.013

Table S6453.  Gene #590: 'POLE MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
POLE MUTATED 3 4 9 0 2 3 13
POLE WILD-TYPE 57 46 40 40 61 122 86

Figure S1924.  Get High-res Image Gene #590: 'POLE MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'POLE MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.162 (Fisher's exact test), Q value = 0.45

Table S6454.  Gene #590: 'POLE MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
POLE MUTATED 8 7 1 17
POLE WILD-TYPE 122 71 67 179
'POLE MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0477 (Fisher's exact test), Q value = 0.23

Table S6455.  Gene #590: 'POLE MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
POLE MUTATED 2 6 5 2 10 2 2 1 3
POLE WILD-TYPE 38 56 23 78 59 46 41 27 71

Figure S1925.  Get High-res Image Gene #590: 'POLE MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'POLE MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0782 (Fisher's exact test), Q value = 0.3

Table S6456.  Gene #590: 'POLE MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
POLE MUTATED 4 1 0 3
POLE WILD-TYPE 29 30 27 16
'POLE MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.356 (Fisher's exact test), Q value = 0.68

Table S6457.  Gene #590: 'POLE MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
POLE MUTATED 6 1 1 0
POLE WILD-TYPE 48 9 23 22
'PNP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0374 (Fisher's exact test), Q value = 0.2

Table S6458.  Gene #591: 'PNP MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
PNP MUTATED 3 0 0 1
PNP WILD-TYPE 175 183 101 19

Figure S1926.  Get High-res Image Gene #591: 'PNP MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'PNP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.641 (Fisher's exact test), Q value = 0.93

Table S6459.  Gene #591: 'PNP MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
PNP MUTATED 0 1 2
PNP WILD-TYPE 87 79 98
'PNP MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S6460.  Gene #591: 'PNP MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
PNP MUTATED 1 1 1
PNP WILD-TYPE 88 159 137
'PNP MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.773 (Fisher's exact test), Q value = 1

Table S6461.  Gene #591: 'PNP MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
PNP MUTATED 1 1 1
PNP WILD-TYPE 181 132 71
'PNP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.415 (Fisher's exact test), Q value = 0.74

Table S6462.  Gene #591: 'PNP MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
PNP MUTATED 1 2 0 1
PNP WILD-TYPE 111 94 92 185
'PNP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.131 (Fisher's exact test), Q value = 0.4

Table S6463.  Gene #591: 'PNP MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
PNP MUTATED 1 0 2 0 0 0 1
PNP WILD-TYPE 59 50 47 40 63 125 98
'PNP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.742 (Fisher's exact test), Q value = 1

Table S6464.  Gene #591: 'PNP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
PNP MUTATED 2 0 0 2
PNP WILD-TYPE 128 78 68 194
'PNP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.128 (Fisher's exact test), Q value = 0.4

Table S6465.  Gene #591: 'PNP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
PNP MUTATED 0 0 0 0 3 1 0 0 0
PNP WILD-TYPE 40 62 28 80 66 47 43 28 74
'ZNF570 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0317 (Fisher's exact test), Q value = 0.18

Table S6466.  Gene #592: 'ZNF570 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ZNF570 MUTATED 3 0 0 1
ZNF570 WILD-TYPE 43 58 64 42

Figure S1927.  Get High-res Image Gene #592: 'ZNF570 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'ZNF570 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.554 (Fisher's exact test), Q value = 0.87

Table S6467.  Gene #592: 'ZNF570 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ZNF570 MUTATED 2 1 1
ZNF570 WILD-TYPE 49 82 76
'ZNF570 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.278 (Fisher's exact test), Q value = 0.61

Table S6468.  Gene #592: 'ZNF570 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ZNF570 MUTATED 7 2 1 0
ZNF570 WILD-TYPE 171 181 100 20
'ZNF570 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.821 (Fisher's exact test), Q value = 1

Table S6469.  Gene #592: 'ZNF570 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ZNF570 MUTATED 2 2 4
ZNF570 WILD-TYPE 85 78 96
'ZNF570 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.321 (Fisher's exact test), Q value = 0.65

Table S6470.  Gene #592: 'ZNF570 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ZNF570 MUTATED 1 3 6
ZNF570 WILD-TYPE 88 157 132
'ZNF570 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S6471.  Gene #592: 'ZNF570 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ZNF570 MUTATED 5 3 2
ZNF570 WILD-TYPE 177 130 70
'ZNF570 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.327 (Fisher's exact test), Q value = 0.66

Table S6472.  Gene #592: 'ZNF570 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ZNF570 MUTATED 1 3 4 3
ZNF570 WILD-TYPE 111 93 88 183
'ZNF570 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.207 (Fisher's exact test), Q value = 0.51

Table S6473.  Gene #592: 'ZNF570 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ZNF570 MUTATED 1 1 4 1 1 1 2
ZNF570 WILD-TYPE 59 49 45 39 62 124 97
'ZNF570 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.871 (Fisher's exact test), Q value = 1

Table S6474.  Gene #592: 'ZNF570 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ZNF570 MUTATED 4 1 1 5
ZNF570 WILD-TYPE 126 77 67 191
'ZNF570 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0481 (Fisher's exact test), Q value = 0.23

Table S6475.  Gene #592: 'ZNF570 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ZNF570 MUTATED 1 2 0 1 5 0 0 2 0
ZNF570 WILD-TYPE 39 60 28 79 64 48 43 26 74

Figure S1928.  Get High-res Image Gene #592: 'ZNF570 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'ZNF570 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0596 (Fisher's exact test), Q value = 0.27

Table S6476.  Gene #592: 'ZNF570 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
ZNF570 MUTATED 0 0 1 2
ZNF570 WILD-TYPE 33 31 26 17
'ZNF570 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.45 (Fisher's exact test), Q value = 0.78

Table S6477.  Gene #592: 'ZNF570 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
ZNF570 MUTATED 1 0 2 0
ZNF570 WILD-TYPE 53 10 22 22
'TNPO1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0535 (Fisher's exact test), Q value = 0.25

Table S6478.  Gene #593: 'TNPO1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
TNPO1 MUTATED 4 0 1 2
TNPO1 WILD-TYPE 42 58 63 41
'TNPO1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.124 (Fisher's exact test), Q value = 0.39

Table S6479.  Gene #593: 'TNPO1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
TNPO1 MUTATED 4 2 1
TNPO1 WILD-TYPE 47 81 76
'TNPO1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00452 (Fisher's exact test), Q value = 0.061

Table S6480.  Gene #593: 'TNPO1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
TNPO1 MUTATED 13 1 3 0
TNPO1 WILD-TYPE 165 182 98 20

Figure S1929.  Get High-res Image Gene #593: 'TNPO1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'TNPO1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.312 (Fisher's exact test), Q value = 0.64

Table S6481.  Gene #593: 'TNPO1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
TNPO1 MUTATED 5 1 5
TNPO1 WILD-TYPE 82 79 95
'TNPO1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.87 (Fisher's exact test), Q value = 1

Table S6482.  Gene #593: 'TNPO1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
TNPO1 MUTATED 2 6 4
TNPO1 WILD-TYPE 87 154 134
'TNPO1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.924 (Fisher's exact test), Q value = 1

Table S6483.  Gene #593: 'TNPO1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
TNPO1 MUTATED 5 5 2
TNPO1 WILD-TYPE 177 128 70
'TNPO1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.798 (Fisher's exact test), Q value = 1

Table S6484.  Gene #593: 'TNPO1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
TNPO1 MUTATED 3 4 2 8
TNPO1 WILD-TYPE 109 92 90 178
'TNPO1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0604 (Fisher's exact test), Q value = 0.27

Table S6485.  Gene #593: 'TNPO1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
TNPO1 MUTATED 2 3 4 0 0 2 6
TNPO1 WILD-TYPE 58 47 45 40 63 123 93
'TNPO1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.407 (Fisher's exact test), Q value = 0.73

Table S6486.  Gene #593: 'TNPO1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
TNPO1 MUTATED 7 1 1 8
TNPO1 WILD-TYPE 123 77 67 188
'TNPO1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.963 (Fisher's exact test), Q value = 1

Table S6487.  Gene #593: 'TNPO1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
TNPO1 MUTATED 1 2 2 3 3 2 2 0 2
TNPO1 WILD-TYPE 39 60 26 77 66 46 41 28 72
'TNPO1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.097 (Fisher's exact test), Q value = 0.34

Table S6488.  Gene #593: 'TNPO1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
TNPO1 MUTATED 2 0 0 2
TNPO1 WILD-TYPE 31 31 27 17
'TNPO1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.87 (Fisher's exact test), Q value = 1

Table S6489.  Gene #593: 'TNPO1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
TNPO1 MUTATED 3 0 1 0
TNPO1 WILD-TYPE 51 10 23 22
'MAP9 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.231 (Fisher's exact test), Q value = 0.55

Table S6490.  Gene #594: 'MAP9 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
MAP9 MUTATED 2 1 0 0
MAP9 WILD-TYPE 44 57 64 43
'MAP9 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.183 (Fisher's exact test), Q value = 0.48

Table S6491.  Gene #594: 'MAP9 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
MAP9 MUTATED 2 0 1
MAP9 WILD-TYPE 49 83 76
'MAP9 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0473 (Fisher's exact test), Q value = 0.23

Table S6492.  Gene #594: 'MAP9 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
MAP9 MUTATED 11 2 5 0
MAP9 WILD-TYPE 167 181 96 20

Figure S1930.  Get High-res Image Gene #594: 'MAP9 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'MAP9 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.476 (Fisher's exact test), Q value = 0.8

Table S6493.  Gene #594: 'MAP9 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
MAP9 MUTATED 7 3 5
MAP9 WILD-TYPE 80 77 95
'MAP9 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.298 (Fisher's exact test), Q value = 0.63

Table S6494.  Gene #594: 'MAP9 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
MAP9 MUTATED 2 4 8
MAP9 WILD-TYPE 87 156 130
'MAP9 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.391 (Fisher's exact test), Q value = 0.72

Table S6495.  Gene #594: 'MAP9 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
MAP9 MUTATED 9 4 1
MAP9 WILD-TYPE 173 129 71
'MAP9 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.066 (Fisher's exact test), Q value = 0.28

Table S6496.  Gene #594: 'MAP9 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
MAP9 MUTATED 3 5 7 3
MAP9 WILD-TYPE 109 91 85 183
'MAP9 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00469 (Fisher's exact test), Q value = 0.062

Table S6497.  Gene #594: 'MAP9 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
MAP9 MUTATED 3 1 6 0 5 1 2
MAP9 WILD-TYPE 57 49 43 40 58 124 97

Figure S1931.  Get High-res Image Gene #594: 'MAP9 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'MAP9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00276 (Fisher's exact test), Q value = 0.046

Table S6498.  Gene #594: 'MAP9 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
MAP9 MUTATED 11 4 0 3
MAP9 WILD-TYPE 119 74 68 193

Figure S1932.  Get High-res Image Gene #594: 'MAP9 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'MAP9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0943 (Fisher's exact test), Q value = 0.34

Table S6499.  Gene #594: 'MAP9 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
MAP9 MUTATED 2 5 0 4 5 2 0 0 0
MAP9 WILD-TYPE 38 57 28 76 64 46 43 28 74
'MAP9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0445 (Fisher's exact test), Q value = 0.22

Table S6500.  Gene #594: 'MAP9 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
MAP9 MUTATED 0 3 0 2
MAP9 WILD-TYPE 33 28 27 17

Figure S1933.  Get High-res Image Gene #594: 'MAP9 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'MAP9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.522 (Fisher's exact test), Q value = 0.84

Table S6501.  Gene #594: 'MAP9 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
MAP9 MUTATED 3 1 1 0
MAP9 WILD-TYPE 51 9 23 22
'ITPR1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 9e-05 (Fisher's exact test), Q value = 0.0048

Table S6502.  Gene #595: 'ITPR1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ITPR1 MUTATED 4 0 0 7
ITPR1 WILD-TYPE 42 58 64 36

Figure S1934.  Get High-res Image Gene #595: 'ITPR1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'ITPR1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00918 (Fisher's exact test), Q value = 0.09

Table S6503.  Gene #595: 'ITPR1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ITPR1 MUTATED 7 1 3
ITPR1 WILD-TYPE 44 82 74

Figure S1935.  Get High-res Image Gene #595: 'ITPR1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'ITPR1 MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S6504.  Gene #595: 'ITPR1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ITPR1 MUTATED 30 6 2 1
ITPR1 WILD-TYPE 148 177 99 19

Figure S1936.  Get High-res Image Gene #595: 'ITPR1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ITPR1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.541 (Fisher's exact test), Q value = 0.86

Table S6505.  Gene #595: 'ITPR1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ITPR1 MUTATED 11 6 11
ITPR1 WILD-TYPE 76 74 89
'ITPR1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.42 (Fisher's exact test), Q value = 0.75

Table S6506.  Gene #595: 'ITPR1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ITPR1 MUTATED 7 13 17
ITPR1 WILD-TYPE 82 147 121
'ITPR1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.92 (Fisher's exact test), Q value = 1

Table S6507.  Gene #595: 'ITPR1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ITPR1 MUTATED 17 14 6
ITPR1 WILD-TYPE 165 119 66
'ITPR1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.471 (Fisher's exact test), Q value = 0.8

Table S6508.  Gene #595: 'ITPR1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ITPR1 MUTATED 8 10 10 12
ITPR1 WILD-TYPE 104 86 82 174
'ITPR1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S6509.  Gene #595: 'ITPR1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ITPR1 MUTATED 6 4 14 3 2 0 11
ITPR1 WILD-TYPE 54 46 35 37 61 125 88

Figure S1937.  Get High-res Image Gene #595: 'ITPR1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ITPR1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0698 (Fisher's exact test), Q value = 0.28

Table S6510.  Gene #595: 'ITPR1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ITPR1 MUTATED 16 9 2 13
ITPR1 WILD-TYPE 114 69 66 183
'ITPR1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00719 (Fisher's exact test), Q value = 0.078

Table S6511.  Gene #595: 'ITPR1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ITPR1 MUTATED 3 10 4 2 12 2 1 2 4
ITPR1 WILD-TYPE 37 52 24 78 57 46 42 26 70

Figure S1938.  Get High-res Image Gene #595: 'ITPR1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'ITPR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00017 (Fisher's exact test), Q value = 0.0075

Table S6512.  Gene #595: 'ITPR1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
ITPR1 MUTATED 1 1 2 8
ITPR1 WILD-TYPE 32 30 25 11

Figure S1939.  Get High-res Image Gene #595: 'ITPR1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'ITPR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.876 (Fisher's exact test), Q value = 1

Table S6513.  Gene #595: 'ITPR1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
ITPR1 MUTATED 7 0 3 2
ITPR1 WILD-TYPE 47 10 21 20
'NME7 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0403 (Fisher's exact test), Q value = 0.21

Table S6514.  Gene #596: 'NME7 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
NME7 MUTATED 0 1 0 3
NME7 WILD-TYPE 46 57 64 40

Figure S1940.  Get High-res Image Gene #596: 'NME7 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'NME7 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S6515.  Gene #596: 'NME7 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
NME7 MUTATED 1 2 1
NME7 WILD-TYPE 50 81 76
'NME7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.126 (Fisher's exact test), Q value = 0.39

Table S6516.  Gene #596: 'NME7 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
NME7 MUTATED 7 1 1 0
NME7 WILD-TYPE 171 182 100 20
'NME7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.207 (Fisher's exact test), Q value = 0.51

Table S6517.  Gene #596: 'NME7 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
NME7 MUTATED 3 0 1
NME7 WILD-TYPE 84 80 99
'NME7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S6518.  Gene #596: 'NME7 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
NME7 MUTATED 2 3 3
NME7 WILD-TYPE 87 157 135
'NME7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.418 (Fisher's exact test), Q value = 0.75

Table S6519.  Gene #596: 'NME7 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
NME7 MUTATED 2 4 2
NME7 WILD-TYPE 180 129 70
'NME7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.442 (Fisher's exact test), Q value = 0.77

Table S6520.  Gene #596: 'NME7 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
NME7 MUTATED 2 3 0 4
NME7 WILD-TYPE 110 93 92 182
'NME7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.524 (Fisher's exact test), Q value = 0.84

Table S6521.  Gene #596: 'NME7 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
NME7 MUTATED 1 2 1 1 0 1 3
NME7 WILD-TYPE 59 48 48 39 63 124 96
'NME7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.733 (Fisher's exact test), Q value = 1

Table S6522.  Gene #596: 'NME7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
NME7 MUTATED 2 1 0 5
NME7 WILD-TYPE 128 77 68 191
'NME7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.555 (Fisher's exact test), Q value = 0.87

Table S6523.  Gene #596: 'NME7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
NME7 MUTATED 0 1 1 0 3 1 1 0 1
NME7 WILD-TYPE 40 61 27 80 66 47 42 28 73
'TNFAIP3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.612 (Fisher's exact test), Q value = 0.91

Table S6524.  Gene #597: 'TNFAIP3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
TNFAIP3 MUTATED 2 1 1 0
TNFAIP3 WILD-TYPE 44 57 63 43
'TNFAIP3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.233 (Fisher's exact test), Q value = 0.55

Table S6525.  Gene #597: 'TNFAIP3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
TNFAIP3 MUTATED 2 2 0
TNFAIP3 WILD-TYPE 49 81 77
'TNFAIP3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0428 (Fisher's exact test), Q value = 0.22

Table S6526.  Gene #597: 'TNFAIP3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
TNFAIP3 MUTATED 20 7 8 2
TNFAIP3 WILD-TYPE 158 176 93 18

Figure S1941.  Get High-res Image Gene #597: 'TNFAIP3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'TNFAIP3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00153 (Fisher's exact test), Q value = 0.032

Table S6527.  Gene #597: 'TNFAIP3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
TNFAIP3 MUTATED 9 3 21
TNFAIP3 WILD-TYPE 78 77 79

Figure S1942.  Get High-res Image Gene #597: 'TNFAIP3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'TNFAIP3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.119 (Fisher's exact test), Q value = 0.38

Table S6528.  Gene #597: 'TNFAIP3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
TNFAIP3 MUTATED 3 12 15
TNFAIP3 WILD-TYPE 86 148 123
'TNFAIP3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.85 (Fisher's exact test), Q value = 1

Table S6529.  Gene #597: 'TNFAIP3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
TNFAIP3 MUTATED 16 9 5
TNFAIP3 WILD-TYPE 166 124 67
'TNFAIP3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 5e-05 (Fisher's exact test), Q value = 0.0032

Table S6530.  Gene #597: 'TNFAIP3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
TNFAIP3 MUTATED 5 17 10 5
TNFAIP3 WILD-TYPE 107 79 82 181

Figure S1943.  Get High-res Image Gene #597: 'TNFAIP3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'TNFAIP3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 2e-05 (Fisher's exact test), Q value = 0.0017

Table S6531.  Gene #597: 'TNFAIP3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
TNFAIP3 MUTATED 4 8 12 4 4 2 3
TNFAIP3 WILD-TYPE 56 42 37 36 59 123 96

Figure S1944.  Get High-res Image Gene #597: 'TNFAIP3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'TNFAIP3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S6532.  Gene #597: 'TNFAIP3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
TNFAIP3 MUTATED 25 5 1 6
TNFAIP3 WILD-TYPE 105 73 67 190

Figure S1945.  Get High-res Image Gene #597: 'TNFAIP3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'TNFAIP3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0203 (Fisher's exact test), Q value = 0.14

Table S6533.  Gene #597: 'TNFAIP3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
TNFAIP3 MUTATED 8 6 4 2 8 3 2 0 4
TNFAIP3 WILD-TYPE 32 56 24 78 61 45 41 28 70

Figure S1946.  Get High-res Image Gene #597: 'TNFAIP3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'TNFAIP3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00058 (Fisher's exact test), Q value = 0.017

Table S6534.  Gene #597: 'TNFAIP3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
TNFAIP3 MUTATED 1 0 0 5
TNFAIP3 WILD-TYPE 32 31 27 14

Figure S1947.  Get High-res Image Gene #597: 'TNFAIP3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'TNFAIP3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.169 (Fisher's exact test), Q value = 0.47

Table S6535.  Gene #597: 'TNFAIP3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
TNFAIP3 MUTATED 6 0 0 0
TNFAIP3 WILD-TYPE 48 10 24 22
'DDX3X MUTATION STATUS' versus 'CN_CNMF'

P value = 0.153 (Fisher's exact test), Q value = 0.44

Table S6536.  Gene #598: 'DDX3X MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
DDX3X MUTATED 7 1 2 0
DDX3X WILD-TYPE 171 182 99 20
'DDX3X MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.495 (Fisher's exact test), Q value = 0.82

Table S6537.  Gene #598: 'DDX3X MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
DDX3X MUTATED 4 1 3
DDX3X WILD-TYPE 83 79 97
'DDX3X MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.876 (Fisher's exact test), Q value = 1

Table S6538.  Gene #598: 'DDX3X MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
DDX3X MUTATED 1 2 3
DDX3X WILD-TYPE 88 158 135
'DDX3X MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.493 (Fisher's exact test), Q value = 0.82

Table S6539.  Gene #598: 'DDX3X MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
DDX3X MUTATED 2 2 2
DDX3X WILD-TYPE 180 131 70
'DDX3X MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.486 (Fisher's exact test), Q value = 0.81

Table S6540.  Gene #598: 'DDX3X MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
DDX3X MUTATED 2 3 3 2
DDX3X WILD-TYPE 110 93 89 184
'DDX3X MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.143 (Fisher's exact test), Q value = 0.42

Table S6541.  Gene #598: 'DDX3X MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
DDX3X MUTATED 0 2 3 1 2 1 1
DDX3X WILD-TYPE 60 48 46 39 61 124 98
'DDX3X MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.759 (Fisher's exact test), Q value = 1

Table S6542.  Gene #598: 'DDX3X MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
DDX3X MUTATED 4 2 1 3
DDX3X WILD-TYPE 126 76 67 193
'DDX3X MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.464 (Fisher's exact test), Q value = 0.79

Table S6543.  Gene #598: 'DDX3X MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
DDX3X MUTATED 2 2 1 3 1 0 1 0 0
DDX3X WILD-TYPE 38 60 27 77 68 48 42 28 74
'ETV1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0223 (Fisher's exact test), Q value = 0.15

Table S6544.  Gene #599: 'ETV1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ETV1 MUTATED 2 0 0 3
ETV1 WILD-TYPE 44 58 64 40

Figure S1948.  Get High-res Image Gene #599: 'ETV1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'ETV1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.737 (Fisher's exact test), Q value = 1

Table S6545.  Gene #599: 'ETV1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ETV1 MUTATED 2 2 1
ETV1 WILD-TYPE 49 81 76
'ETV1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0121 (Fisher's exact test), Q value = 0.11

Table S6546.  Gene #599: 'ETV1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ETV1 MUTATED 12 2 1 0
ETV1 WILD-TYPE 166 181 100 20

Figure S1949.  Get High-res Image Gene #599: 'ETV1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ETV1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.369 (Fisher's exact test), Q value = 0.7

Table S6547.  Gene #599: 'ETV1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ETV1 MUTATED 4 1 5
ETV1 WILD-TYPE 83 79 95
'ETV1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.107 (Fisher's exact test), Q value = 0.36

Table S6548.  Gene #599: 'ETV1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ETV1 MUTATED 1 4 9
ETV1 WILD-TYPE 88 156 129
'ETV1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.634 (Fisher's exact test), Q value = 0.93

Table S6549.  Gene #599: 'ETV1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ETV1 MUTATED 8 5 1
ETV1 WILD-TYPE 174 128 71
'ETV1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.159 (Fisher's exact test), Q value = 0.45

Table S6550.  Gene #599: 'ETV1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ETV1 MUTATED 1 3 6 5
ETV1 WILD-TYPE 111 93 86 181
'ETV1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.243 (Fisher's exact test), Q value = 0.57

Table S6551.  Gene #599: 'ETV1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ETV1 MUTATED 3 2 3 0 3 1 3
ETV1 WILD-TYPE 57 48 46 40 60 124 96
'ETV1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.125 (Fisher's exact test), Q value = 0.39

Table S6552.  Gene #599: 'ETV1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ETV1 MUTATED 7 3 0 4
ETV1 WILD-TYPE 123 75 68 192
'ETV1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0998 (Fisher's exact test), Q value = 0.35

Table S6553.  Gene #599: 'ETV1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ETV1 MUTATED 0 4 2 1 4 1 2 0 0
ETV1 WILD-TYPE 40 58 26 79 65 47 41 28 74
'ETV1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.118 (Fisher's exact test), Q value = 0.38

Table S6554.  Gene #599: 'ETV1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
ETV1 MUTATED 2 1 0 3
ETV1 WILD-TYPE 31 30 27 16
'ETV1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S6555.  Gene #599: 'ETV1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
ETV1 MUTATED 4 0 1 1
ETV1 WILD-TYPE 50 10 23 21
'ACVR2A MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.106 (Fisher's exact test), Q value = 0.36

Table S6556.  Gene #600: 'ACVR2A MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ACVR2A MUTATED 3 1 0 2
ACVR2A WILD-TYPE 43 57 64 41
'ACVR2A MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.657 (Fisher's exact test), Q value = 0.94

Table S6557.  Gene #600: 'ACVR2A MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ACVR2A MUTATED 2 3 1
ACVR2A WILD-TYPE 49 80 76
'ACVR2A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0136 (Fisher's exact test), Q value = 0.12

Table S6558.  Gene #600: 'ACVR2A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ACVR2A MUTATED 13 3 1 1
ACVR2A WILD-TYPE 165 180 100 19

Figure S1950.  Get High-res Image Gene #600: 'ACVR2A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ACVR2A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0188 (Fisher's exact test), Q value = 0.14

Table S6559.  Gene #600: 'ACVR2A MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ACVR2A MUTATED 3 0 8
ACVR2A WILD-TYPE 84 80 92

Figure S1951.  Get High-res Image Gene #600: 'ACVR2A MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'ACVR2A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.163 (Fisher's exact test), Q value = 0.46

Table S6560.  Gene #600: 'ACVR2A MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ACVR2A MUTATED 1 10 5
ACVR2A WILD-TYPE 88 150 133
'ACVR2A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0467 (Fisher's exact test), Q value = 0.23

Table S6561.  Gene #600: 'ACVR2A MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ACVR2A MUTATED 3 9 4
ACVR2A WILD-TYPE 179 124 68

Figure S1952.  Get High-res Image Gene #600: 'ACVR2A MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'ACVR2A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.187 (Fisher's exact test), Q value = 0.49

Table S6562.  Gene #600: 'ACVR2A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ACVR2A MUTATED 1 6 4 7
ACVR2A WILD-TYPE 111 90 88 179
'ACVR2A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.174 (Fisher's exact test), Q value = 0.47

Table S6563.  Gene #600: 'ACVR2A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ACVR2A MUTATED 2 2 5 0 2 2 5
ACVR2A WILD-TYPE 58 48 44 40 61 123 94
'ACVR2A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.804 (Fisher's exact test), Q value = 1

Table S6564.  Gene #600: 'ACVR2A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ACVR2A MUTATED 6 3 1 8
ACVR2A WILD-TYPE 124 75 67 188
'ACVR2A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.271 (Fisher's exact test), Q value = 0.6

Table S6565.  Gene #600: 'ACVR2A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ACVR2A MUTATED 3 2 2 1 6 1 1 0 2
ACVR2A WILD-TYPE 37 60 26 79 63 47 42 28 72
'ACVR2A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0243 (Fisher's exact test), Q value = 0.16

Table S6566.  Gene #600: 'ACVR2A MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
ACVR2A MUTATED 2 0 0 3
ACVR2A WILD-TYPE 31 31 27 16

Figure S1953.  Get High-res Image Gene #600: 'ACVR2A MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'ACVR2A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.577 (Fisher's exact test), Q value = 0.88

Table S6567.  Gene #600: 'ACVR2A MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
ACVR2A MUTATED 3 0 2 0
ACVR2A WILD-TYPE 51 10 22 22
'RNF20 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.114 (Fisher's exact test), Q value = 0.37

Table S6568.  Gene #601: 'RNF20 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
RNF20 MUTATED 2 0 1 3
RNF20 WILD-TYPE 44 58 63 40
'RNF20 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.575 (Fisher's exact test), Q value = 0.88

Table S6569.  Gene #601: 'RNF20 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
RNF20 MUTATED 2 1 3
RNF20 WILD-TYPE 49 82 74
'RNF20 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00384 (Fisher's exact test), Q value = 0.056

Table S6570.  Gene #601: 'RNF20 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
RNF20 MUTATED 16 4 1 0
RNF20 WILD-TYPE 162 179 100 20

Figure S1954.  Get High-res Image Gene #601: 'RNF20 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'RNF20 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.104 (Fisher's exact test), Q value = 0.36

Table S6571.  Gene #601: 'RNF20 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
RNF20 MUTATED 6 1 8
RNF20 WILD-TYPE 81 79 92
'RNF20 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0453 (Fisher's exact test), Q value = 0.23

Table S6572.  Gene #601: 'RNF20 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
RNF20 MUTATED 0 8 8
RNF20 WILD-TYPE 89 152 130

Figure S1955.  Get High-res Image Gene #601: 'RNF20 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'RNF20 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.751 (Fisher's exact test), Q value = 1

Table S6573.  Gene #601: 'RNF20 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
RNF20 MUTATED 7 7 2
RNF20 WILD-TYPE 175 126 70
'RNF20 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0169 (Fisher's exact test), Q value = 0.13

Table S6574.  Gene #601: 'RNF20 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
RNF20 MUTATED 2 7 8 4
RNF20 WILD-TYPE 110 89 84 182

Figure S1956.  Get High-res Image Gene #601: 'RNF20 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'RNF20 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00095 (Fisher's exact test), Q value = 0.024

Table S6575.  Gene #601: 'RNF20 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
RNF20 MUTATED 4 3 7 1 1 0 5
RNF20 WILD-TYPE 56 47 42 39 62 125 94

Figure S1957.  Get High-res Image Gene #601: 'RNF20 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'RNF20 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.431 (Fisher's exact test), Q value = 0.76

Table S6576.  Gene #601: 'RNF20 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
RNF20 MUTATED 8 4 1 7
RNF20 WILD-TYPE 122 74 67 189
'RNF20 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.118 (Fisher's exact test), Q value = 0.38

Table S6577.  Gene #601: 'RNF20 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
RNF20 MUTATED 1 5 0 4 5 0 4 0 1
RNF20 WILD-TYPE 39 57 28 76 64 48 39 28 73
'RNF20 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.305 (Fisher's exact test), Q value = 0.64

Table S6578.  Gene #601: 'RNF20 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
RNF20 MUTATED 3 1 0 2
RNF20 WILD-TYPE 30 30 27 17
'RNF20 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.567 (Fisher's exact test), Q value = 0.87

Table S6579.  Gene #601: 'RNF20 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
RNF20 MUTATED 5 0 1 0
RNF20 WILD-TYPE 49 10 23 22
'ATG2B MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.01 (Fisher's exact test), Q value = 0.096

Table S6580.  Gene #602: 'ATG2B MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ATG2B MUTATED 2 0 1 5
ATG2B WILD-TYPE 44 58 63 38

Figure S1958.  Get High-res Image Gene #602: 'ATG2B MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'ATG2B MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.531 (Fisher's exact test), Q value = 0.85

Table S6581.  Gene #602: 'ATG2B MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ATG2B MUTATED 3 2 3
ATG2B WILD-TYPE 48 81 74
'ATG2B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00211 (Fisher's exact test), Q value = 0.039

Table S6582.  Gene #602: 'ATG2B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ATG2B MUTATED 14 2 1 1
ATG2B WILD-TYPE 164 181 100 19

Figure S1959.  Get High-res Image Gene #602: 'ATG2B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ATG2B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.257 (Fisher's exact test), Q value = 0.58

Table S6583.  Gene #602: 'ATG2B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ATG2B MUTATED 3 1 6
ATG2B WILD-TYPE 84 79 94
'ATG2B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.489 (Fisher's exact test), Q value = 0.82

Table S6584.  Gene #602: 'ATG2B MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ATG2B MUTATED 3 5 8
ATG2B WILD-TYPE 86 155 130
'ATG2B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.89 (Fisher's exact test), Q value = 1

Table S6585.  Gene #602: 'ATG2B MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ATG2B MUTATED 8 6 2
ATG2B WILD-TYPE 174 127 70
'ATG2B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.118 (Fisher's exact test), Q value = 0.38

Table S6586.  Gene #602: 'ATG2B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ATG2B MUTATED 1 7 3 7
ATG2B WILD-TYPE 111 89 89 179
'ATG2B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0762 (Fisher's exact test), Q value = 0.3

Table S6587.  Gene #602: 'ATG2B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ATG2B MUTATED 2 1 6 1 1 2 5
ATG2B WILD-TYPE 58 49 43 39 62 123 94
'ATG2B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.912 (Fisher's exact test), Q value = 1

Table S6588.  Gene #602: 'ATG2B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ATG2B MUTATED 4 2 3 8
ATG2B WILD-TYPE 126 76 65 188
'ATG2B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.254 (Fisher's exact test), Q value = 0.58

Table S6589.  Gene #602: 'ATG2B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ATG2B MUTATED 0 3 1 2 6 1 3 0 1
ATG2B WILD-TYPE 40 59 27 78 63 47 40 28 73
'ATG2B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0596 (Fisher's exact test), Q value = 0.27

Table S6590.  Gene #602: 'ATG2B MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
ATG2B MUTATED 0 0 1 2
ATG2B WILD-TYPE 33 31 26 17
'ATG2B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S6591.  Gene #602: 'ATG2B MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
ATG2B MUTATED 2 0 1 0
ATG2B WILD-TYPE 52 10 23 22
'FRY MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00053 (Fisher's exact test), Q value = 0.016

Table S6592.  Gene #603: 'FRY MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
FRY MUTATED 5 0 0 5
FRY WILD-TYPE 41 58 64 38

Figure S1960.  Get High-res Image Gene #603: 'FRY MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'FRY MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00476 (Fisher's exact test), Q value = 0.062

Table S6593.  Gene #603: 'FRY MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
FRY MUTATED 7 1 2
FRY WILD-TYPE 44 82 75

Figure S1961.  Get High-res Image Gene #603: 'FRY MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'FRY MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S6594.  Gene #603: 'FRY MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
FRY MUTATED 31 5 3 1
FRY WILD-TYPE 147 178 98 19

Figure S1962.  Get High-res Image Gene #603: 'FRY MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'FRY MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00023 (Fisher's exact test), Q value = 0.0091

Table S6595.  Gene #603: 'FRY MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
FRY MUTATED 8 1 19
FRY WILD-TYPE 79 79 81

Figure S1963.  Get High-res Image Gene #603: 'FRY MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'FRY MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.733 (Fisher's exact test), Q value = 1

Table S6596.  Gene #603: 'FRY MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
FRY MUTATED 7 14 15
FRY WILD-TYPE 82 146 123
'FRY MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.803 (Fisher's exact test), Q value = 1

Table S6597.  Gene #603: 'FRY MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
FRY MUTATED 18 13 5
FRY WILD-TYPE 164 120 67
'FRY MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0014 (Fisher's exact test), Q value = 0.031

Table S6598.  Gene #603: 'FRY MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
FRY MUTATED 3 15 12 11
FRY WILD-TYPE 109 81 80 175

Figure S1964.  Get High-res Image Gene #603: 'FRY MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'FRY MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S6599.  Gene #603: 'FRY MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
FRY MUTATED 4 6 14 0 4 0 13
FRY WILD-TYPE 56 44 35 40 59 125 86

Figure S1965.  Get High-res Image Gene #603: 'FRY MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'FRY MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0655 (Fisher's exact test), Q value = 0.28

Table S6600.  Gene #603: 'FRY MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
FRY MUTATED 15 8 1 16
FRY WILD-TYPE 115 70 67 180
'FRY MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00597 (Fisher's exact test), Q value = 0.07

Table S6601.  Gene #603: 'FRY MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
FRY MUTATED 6 7 3 3 12 1 2 4 2
FRY WILD-TYPE 34 55 25 77 57 47 41 24 72

Figure S1966.  Get High-res Image Gene #603: 'FRY MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'FRY MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00902 (Fisher's exact test), Q value = 0.089

Table S6602.  Gene #603: 'FRY MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
FRY MUTATED 2 1 0 5
FRY WILD-TYPE 31 30 27 14

Figure S1967.  Get High-res Image Gene #603: 'FRY MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'FRY MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.432 (Fisher's exact test), Q value = 0.76

Table S6603.  Gene #603: 'FRY MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
FRY MUTATED 6 0 2 0
FRY WILD-TYPE 48 10 22 22
'SCN2A MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0069 (Fisher's exact test), Q value = 0.076

Table S6604.  Gene #604: 'SCN2A MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
SCN2A MUTATED 6 2 0 4
SCN2A WILD-TYPE 40 56 64 39

Figure S1968.  Get High-res Image Gene #604: 'SCN2A MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'SCN2A MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00547 (Fisher's exact test), Q value = 0.067

Table S6605.  Gene #604: 'SCN2A MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
SCN2A MUTATED 8 2 2
SCN2A WILD-TYPE 43 81 75

Figure S1969.  Get High-res Image Gene #604: 'SCN2A MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'SCN2A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00268 (Fisher's exact test), Q value = 0.045

Table S6606.  Gene #604: 'SCN2A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
SCN2A MUTATED 30 11 8 0
SCN2A WILD-TYPE 148 172 93 20

Figure S1970.  Get High-res Image Gene #604: 'SCN2A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'SCN2A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.762 (Fisher's exact test), Q value = 1

Table S6607.  Gene #604: 'SCN2A MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
SCN2A MUTATED 10 10 15
SCN2A WILD-TYPE 77 70 85
'SCN2A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.637 (Fisher's exact test), Q value = 0.93

Table S6608.  Gene #604: 'SCN2A MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
SCN2A MUTATED 8 15 17
SCN2A WILD-TYPE 81 145 121
'SCN2A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.419 (Fisher's exact test), Q value = 0.75

Table S6609.  Gene #604: 'SCN2A MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
SCN2A MUTATED 23 11 6
SCN2A WILD-TYPE 159 122 66
'SCN2A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.257 (Fisher's exact test), Q value = 0.58

Table S6610.  Gene #604: 'SCN2A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
SCN2A MUTATED 13 12 12 13
SCN2A WILD-TYPE 99 84 80 173
'SCN2A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00198 (Fisher's exact test), Q value = 0.037

Table S6611.  Gene #604: 'SCN2A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
SCN2A MUTATED 9 6 11 5 5 3 11
SCN2A WILD-TYPE 51 44 38 35 58 122 88

Figure S1971.  Get High-res Image Gene #604: 'SCN2A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'SCN2A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0996 (Fisher's exact test), Q value = 0.35

Table S6612.  Gene #604: 'SCN2A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
SCN2A MUTATED 15 13 5 14
SCN2A WILD-TYPE 115 65 63 182
'SCN2A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.106 (Fisher's exact test), Q value = 0.36

Table S6613.  Gene #604: 'SCN2A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
SCN2A MUTATED 5 8 3 4 11 7 4 3 2
SCN2A WILD-TYPE 35 54 25 76 58 41 39 25 72
'SCN2A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.602 (Fisher's exact test), Q value = 0.9

Table S6614.  Gene #604: 'SCN2A MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
SCN2A MUTATED 2 4 2 3
SCN2A WILD-TYPE 31 27 25 16
'SCN2A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.787 (Fisher's exact test), Q value = 1

Table S6615.  Gene #604: 'SCN2A MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
SCN2A MUTATED 7 1 2 1
SCN2A WILD-TYPE 47 9 22 21
'ALK MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.053 (Fisher's exact test), Q value = 0.25

Table S6616.  Gene #605: 'ALK MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ALK MUTATED 6 2 1 4
ALK WILD-TYPE 40 56 63 39
'ALK MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00802 (Fisher's exact test), Q value = 0.084

Table S6617.  Gene #605: 'ALK MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ALK MUTATED 8 2 3
ALK WILD-TYPE 43 81 74

Figure S1972.  Get High-res Image Gene #605: 'ALK MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'ALK MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00114 (Fisher's exact test), Q value = 0.027

Table S6618.  Gene #605: 'ALK MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ALK MUTATED 23 16 1 0
ALK WILD-TYPE 155 167 100 20

Figure S1973.  Get High-res Image Gene #605: 'ALK MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ALK MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.966 (Fisher's exact test), Q value = 1

Table S6619.  Gene #605: 'ALK MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ALK MUTATED 9 8 9
ALK WILD-TYPE 78 72 91
'ALK MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.128 (Fisher's exact test), Q value = 0.4

Table S6620.  Gene #605: 'ALK MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ALK MUTATED 5 12 18
ALK WILD-TYPE 84 148 120
'ALK MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.158 (Fisher's exact test), Q value = 0.45

Table S6621.  Gene #605: 'ALK MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ALK MUTATED 22 8 5
ALK WILD-TYPE 160 125 67
'ALK MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.403 (Fisher's exact test), Q value = 0.73

Table S6622.  Gene #605: 'ALK MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ALK MUTATED 8 5 11 16
ALK WILD-TYPE 104 91 81 170
'ALK MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.172 (Fisher's exact test), Q value = 0.47

Table S6623.  Gene #605: 'ALK MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ALK MUTATED 7 6 5 3 4 4 11
ALK WILD-TYPE 53 44 44 37 59 121 88
'ALK MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.723 (Fisher's exact test), Q value = 0.99

Table S6624.  Gene #605: 'ALK MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ALK MUTATED 14 6 5 14
ALK WILD-TYPE 116 72 63 182
'ALK MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.145 (Fisher's exact test), Q value = 0.43

Table S6625.  Gene #605: 'ALK MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ALK MUTATED 5 6 3 7 10 1 4 1 2
ALK WILD-TYPE 35 56 25 73 59 47 39 27 72
'ALK MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.726 (Fisher's exact test), Q value = 0.99

Table S6626.  Gene #605: 'ALK MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
ALK MUTATED 2 1 1 2
ALK WILD-TYPE 31 30 26 17
'ALK MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.725 (Fisher's exact test), Q value = 0.99

Table S6627.  Gene #605: 'ALK MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
ALK MUTATED 2 0 2 2
ALK WILD-TYPE 52 10 22 20
'SP4 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0633 (Fisher's exact test), Q value = 0.27

Table S6628.  Gene #606: 'SP4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
SP4 MUTATED 1 0 0 2
SP4 WILD-TYPE 45 58 64 41
'SP4 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.254 (Fisher's exact test), Q value = 0.58

Table S6629.  Gene #606: 'SP4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
SP4 MUTATED 2 1 0
SP4 WILD-TYPE 49 82 77
'SP4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0735 (Fisher's exact test), Q value = 0.29

Table S6630.  Gene #606: 'SP4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
SP4 MUTATED 7 1 3 1
SP4 WILD-TYPE 171 182 98 19
'SP4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.915 (Fisher's exact test), Q value = 1

Table S6631.  Gene #606: 'SP4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
SP4 MUTATED 3 2 4
SP4 WILD-TYPE 84 78 96
'SP4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.833 (Fisher's exact test), Q value = 1

Table S6632.  Gene #606: 'SP4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
SP4 MUTATED 1 4 4
SP4 WILD-TYPE 88 156 134
'SP4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.403 (Fisher's exact test), Q value = 0.73

Table S6633.  Gene #606: 'SP4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
SP4 MUTATED 5 4 0
SP4 WILD-TYPE 177 129 72
'SP4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.486 (Fisher's exact test), Q value = 0.81

Table S6634.  Gene #606: 'SP4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
SP4 MUTATED 2 4 3 3
SP4 WILD-TYPE 110 92 89 183
'SP4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0356 (Fisher's exact test), Q value = 0.2

Table S6635.  Gene #606: 'SP4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
SP4 MUTATED 2 2 3 2 0 0 3
SP4 WILD-TYPE 58 48 46 38 63 125 96

Figure S1974.  Get High-res Image Gene #606: 'SP4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'SP4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0906 (Fisher's exact test), Q value = 0.33

Table S6636.  Gene #606: 'SP4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
SP4 MUTATED 7 1 1 2
SP4 WILD-TYPE 123 77 67 194
'SP4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.153 (Fisher's exact test), Q value = 0.44

Table S6637.  Gene #606: 'SP4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
SP4 MUTATED 3 1 2 2 2 0 1 0 0
SP4 WILD-TYPE 37 61 26 78 67 48 42 28 74
'SP4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.872 (Fisher's exact test), Q value = 1

Table S6638.  Gene #606: 'SP4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
SP4 MUTATED 1 1 0 1
SP4 WILD-TYPE 32 30 27 18
'SP4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S6639.  Gene #606: 'SP4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
SP4 MUTATED 2 0 1 0
SP4 WILD-TYPE 52 10 23 22
'IQSEC2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.37 (Fisher's exact test), Q value = 0.7

Table S6640.  Gene #607: 'IQSEC2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
IQSEC2 MUTATED 2 1 0 1
IQSEC2 WILD-TYPE 44 57 64 42
'IQSEC2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0594 (Fisher's exact test), Q value = 0.27

Table S6641.  Gene #607: 'IQSEC2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
IQSEC2 MUTATED 3 1 0
IQSEC2 WILD-TYPE 48 82 77
'IQSEC2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0152 (Fisher's exact test), Q value = 0.12

Table S6642.  Gene #607: 'IQSEC2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
IQSEC2 MUTATED 13 3 1 0
IQSEC2 WILD-TYPE 165 180 100 20

Figure S1975.  Get High-res Image Gene #607: 'IQSEC2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'IQSEC2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00472 (Fisher's exact test), Q value = 0.062

Table S6643.  Gene #607: 'IQSEC2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
IQSEC2 MUTATED 3 0 10
IQSEC2 WILD-TYPE 84 80 90

Figure S1976.  Get High-res Image Gene #607: 'IQSEC2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'IQSEC2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.48 (Fisher's exact test), Q value = 0.81

Table S6644.  Gene #607: 'IQSEC2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
IQSEC2 MUTATED 1 6 6
IQSEC2 WILD-TYPE 88 154 132
'IQSEC2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.339 (Fisher's exact test), Q value = 0.67

Table S6645.  Gene #607: 'IQSEC2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
IQSEC2 MUTATED 4 7 2
IQSEC2 WILD-TYPE 178 126 70
'IQSEC2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 3e-05 (Fisher's exact test), Q value = 0.0022

Table S6646.  Gene #607: 'IQSEC2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
IQSEC2 MUTATED 0 12 1 4
IQSEC2 WILD-TYPE 112 84 91 182

Figure S1977.  Get High-res Image Gene #607: 'IQSEC2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'IQSEC2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S6647.  Gene #607: 'IQSEC2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
IQSEC2 MUTATED 0 3 9 0 0 0 5
IQSEC2 WILD-TYPE 60 47 40 40 63 125 94

Figure S1978.  Get High-res Image Gene #607: 'IQSEC2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'IQSEC2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0083 (Fisher's exact test), Q value = 0.085

Table S6648.  Gene #607: 'IQSEC2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
IQSEC2 MUTATED 10 0 0 7
IQSEC2 WILD-TYPE 120 78 68 189

Figure S1979.  Get High-res Image Gene #607: 'IQSEC2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'IQSEC2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1e-04 (Fisher's exact test), Q value = 0.0052

Table S6649.  Gene #607: 'IQSEC2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
IQSEC2 MUTATED 2 1 0 1 11 0 1 1 0
IQSEC2 WILD-TYPE 38 61 28 79 58 48 42 27 74

Figure S1980.  Get High-res Image Gene #607: 'IQSEC2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'PPP1R12B MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.448 (Fisher's exact test), Q value = 0.77

Table S6650.  Gene #608: 'PPP1R12B MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
PPP1R12B MUTATED 1 1 1 3
PPP1R12B WILD-TYPE 45 57 63 40
'PPP1R12B MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.881 (Fisher's exact test), Q value = 1

Table S6651.  Gene #608: 'PPP1R12B MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
PPP1R12B MUTATED 2 2 2
PPP1R12B WILD-TYPE 49 81 75
'PPP1R12B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.599 (Fisher's exact test), Q value = 0.9

Table S6652.  Gene #608: 'PPP1R12B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
PPP1R12B MUTATED 8 4 3 0
PPP1R12B WILD-TYPE 170 179 98 20
'PPP1R12B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.127 (Fisher's exact test), Q value = 0.4

Table S6653.  Gene #608: 'PPP1R12B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
PPP1R12B MUTATED 6 1 2
PPP1R12B WILD-TYPE 81 79 98
'PPP1R12B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.488 (Fisher's exact test), Q value = 0.81

Table S6654.  Gene #608: 'PPP1R12B MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
PPP1R12B MUTATED 3 3 6
PPP1R12B WILD-TYPE 86 157 132
'PPP1R12B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.693 (Fisher's exact test), Q value = 0.97

Table S6655.  Gene #608: 'PPP1R12B MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
PPP1R12B MUTATED 6 3 3
PPP1R12B WILD-TYPE 176 130 69
'PPP1R12B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.747 (Fisher's exact test), Q value = 1

Table S6656.  Gene #608: 'PPP1R12B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
PPP1R12B MUTATED 2 3 4 6
PPP1R12B WILD-TYPE 110 93 88 180
'PPP1R12B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.354 (Fisher's exact test), Q value = 0.68

Table S6657.  Gene #608: 'PPP1R12B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
PPP1R12B MUTATED 2 4 1 0 3 2 3
PPP1R12B WILD-TYPE 58 46 48 40 60 123 96
'PPP1R12B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.81 (Fisher's exact test), Q value = 1

Table S6658.  Gene #608: 'PPP1R12B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
PPP1R12B MUTATED 5 1 2 6
PPP1R12B WILD-TYPE 125 77 66 190
'PPP1R12B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.9 (Fisher's exact test), Q value = 1

Table S6659.  Gene #608: 'PPP1R12B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
PPP1R12B MUTATED 2 3 1 2 2 0 1 1 2
PPP1R12B WILD-TYPE 38 59 27 78 67 48 42 27 72
'WWTR1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.328 (Fisher's exact test), Q value = 0.66

Table S6660.  Gene #609: 'WWTR1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
WWTR1 MUTATED 5 1 1 0
WWTR1 WILD-TYPE 173 182 100 20
'WWTR1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.195 (Fisher's exact test), Q value = 0.5

Table S6661.  Gene #609: 'WWTR1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
WWTR1 MUTATED 1 0 4
WWTR1 WILD-TYPE 86 80 96
'WWTR1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.506 (Fisher's exact test), Q value = 0.83

Table S6662.  Gene #609: 'WWTR1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
WWTR1 MUTATED 0 3 3
WWTR1 WILD-TYPE 89 157 135
'WWTR1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.337 (Fisher's exact test), Q value = 0.66

Table S6663.  Gene #609: 'WWTR1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
WWTR1 MUTATED 5 1 0
WWTR1 WILD-TYPE 177 132 72
'WWTR1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.224 (Fisher's exact test), Q value = 0.54

Table S6664.  Gene #609: 'WWTR1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
WWTR1 MUTATED 1 2 3 1
WWTR1 WILD-TYPE 111 94 89 185
'WWTR1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.212 (Fisher's exact test), Q value = 0.52

Table S6665.  Gene #609: 'WWTR1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
WWTR1 MUTATED 0 1 3 0 1 1 1
WWTR1 WILD-TYPE 60 49 46 40 62 124 98
'WWTR1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.904 (Fisher's exact test), Q value = 1

Table S6666.  Gene #609: 'WWTR1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
WWTR1 MUTATED 2 1 0 4
WWTR1 WILD-TYPE 128 77 68 192
'WWTR1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.692 (Fisher's exact test), Q value = 0.97

Table S6667.  Gene #609: 'WWTR1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
WWTR1 MUTATED 1 2 0 2 2 0 0 0 0
WWTR1 WILD-TYPE 39 60 28 78 67 48 43 28 74
'WWTR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00432 (Fisher's exact test), Q value = 0.06

Table S6668.  Gene #609: 'WWTR1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
WWTR1 MUTATED 0 0 0 3
WWTR1 WILD-TYPE 33 31 27 16

Figure S1981.  Get High-res Image Gene #609: 'WWTR1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'WWTR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S6669.  Gene #609: 'WWTR1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
WWTR1 MUTATED 2 0 1 0
WWTR1 WILD-TYPE 52 10 23 22
'ABLIM3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00202 (Fisher's exact test), Q value = 0.038

Table S6670.  Gene #610: 'ABLIM3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ABLIM3 MUTATED 5 0 0 1
ABLIM3 WILD-TYPE 41 58 64 42

Figure S1982.  Get High-res Image Gene #610: 'ABLIM3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'ABLIM3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0033 (Fisher's exact test), Q value = 0.052

Table S6671.  Gene #610: 'ABLIM3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ABLIM3 MUTATED 5 1 0
ABLIM3 WILD-TYPE 46 82 77

Figure S1983.  Get High-res Image Gene #610: 'ABLIM3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'ABLIM3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0101 (Fisher's exact test), Q value = 0.096

Table S6672.  Gene #610: 'ABLIM3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ABLIM3 MUTATED 13 5 0 0
ABLIM3 WILD-TYPE 165 178 101 20

Figure S1984.  Get High-res Image Gene #610: 'ABLIM3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ABLIM3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.935 (Fisher's exact test), Q value = 1

Table S6673.  Gene #610: 'ABLIM3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ABLIM3 MUTATED 4 3 5
ABLIM3 WILD-TYPE 83 77 95
'ABLIM3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.188 (Fisher's exact test), Q value = 0.49

Table S6674.  Gene #610: 'ABLIM3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ABLIM3 MUTATED 2 3 8
ABLIM3 WILD-TYPE 87 157 130
'ABLIM3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.867 (Fisher's exact test), Q value = 1

Table S6675.  Gene #610: 'ABLIM3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ABLIM3 MUTATED 6 4 3
ABLIM3 WILD-TYPE 176 129 69
'ABLIM3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.623 (Fisher's exact test), Q value = 0.92

Table S6676.  Gene #610: 'ABLIM3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ABLIM3 MUTATED 5 3 5 5
ABLIM3 WILD-TYPE 107 93 87 181
'ABLIM3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0979 (Fisher's exact test), Q value = 0.34

Table S6677.  Gene #610: 'ABLIM3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ABLIM3 MUTATED 1 3 4 3 2 1 4
ABLIM3 WILD-TYPE 59 47 45 37 61 124 95
'ABLIM3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.748 (Fisher's exact test), Q value = 1

Table S6678.  Gene #610: 'ABLIM3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ABLIM3 MUTATED 7 3 2 6
ABLIM3 WILD-TYPE 123 75 66 190
'ABLIM3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0576 (Fisher's exact test), Q value = 0.26

Table S6679.  Gene #610: 'ABLIM3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ABLIM3 MUTATED 3 5 0 2 5 0 2 1 0
ABLIM3 WILD-TYPE 37 57 28 78 64 48 41 27 74
'ABLIM3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.666 (Fisher's exact test), Q value = 0.95

Table S6680.  Gene #610: 'ABLIM3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
ABLIM3 MUTATED 1 1 1 2
ABLIM3 WILD-TYPE 32 30 26 17
'ABLIM3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.295 (Fisher's exact test), Q value = 0.62

Table S6681.  Gene #610: 'ABLIM3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
ABLIM3 MUTATED 1 1 2 1
ABLIM3 WILD-TYPE 53 9 22 21
'SNTN MUTATION STATUS' versus 'CN_CNMF'

P value = 0.452 (Fisher's exact test), Q value = 0.78

Table S6682.  Gene #611: 'SNTN MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
SNTN MUTATED 3 2 1 1
SNTN WILD-TYPE 175 181 100 19
'SNTN MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0948 (Fisher's exact test), Q value = 0.34

Table S6683.  Gene #611: 'SNTN MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
SNTN MUTATED 0 2 5
SNTN WILD-TYPE 87 78 95
'SNTN MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0517 (Fisher's exact test), Q value = 0.25

Table S6684.  Gene #611: 'SNTN MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
SNTN MUTATED 1 6 0
SNTN WILD-TYPE 88 154 138
'SNTN MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.615 (Fisher's exact test), Q value = 0.91

Table S6685.  Gene #611: 'SNTN MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
SNTN MUTATED 2 3 2
SNTN WILD-TYPE 180 130 70
'SNTN MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.038 (Fisher's exact test), Q value = 0.2

Table S6686.  Gene #611: 'SNTN MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
SNTN MUTATED 3 1 3 0
SNTN WILD-TYPE 109 95 89 186

Figure S1985.  Get High-res Image Gene #611: 'SNTN MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'SNTN MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0219 (Fisher's exact test), Q value = 0.15

Table S6687.  Gene #611: 'SNTN MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
SNTN MUTATED 3 2 1 0 1 0 0
SNTN WILD-TYPE 57 48 48 40 62 125 99

Figure S1986.  Get High-res Image Gene #611: 'SNTN MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'SNTN MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.337 (Fisher's exact test), Q value = 0.66

Table S6688.  Gene #611: 'SNTN MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
SNTN MUTATED 3 2 1 1
SNTN WILD-TYPE 127 76 67 195
'SNTN MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.381 (Fisher's exact test), Q value = 0.71

Table S6689.  Gene #611: 'SNTN MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
SNTN MUTATED 0 0 1 2 1 1 2 0 0
SNTN WILD-TYPE 40 62 27 78 68 47 41 28 74
'SNTN MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.255 (Fisher's exact test), Q value = 0.58

Table S6690.  Gene #611: 'SNTN MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
SNTN MUTATED 2 0 0 1
SNTN WILD-TYPE 31 31 27 18
'SNTN MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.695 (Fisher's exact test), Q value = 0.97

Table S6691.  Gene #611: 'SNTN MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
SNTN MUTATED 1 0 1 1
SNTN WILD-TYPE 53 10 23 21
'DSG4 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00126 (Fisher's exact test), Q value = 0.029

Table S6692.  Gene #612: 'DSG4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
DSG4 MUTATED 2 0 0 5
DSG4 WILD-TYPE 44 58 64 38

Figure S1987.  Get High-res Image Gene #612: 'DSG4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'DSG4 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00526 (Fisher's exact test), Q value = 0.065

Table S6693.  Gene #612: 'DSG4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
DSG4 MUTATED 5 0 2
DSG4 WILD-TYPE 46 83 75

Figure S1988.  Get High-res Image Gene #612: 'DSG4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'DSG4 MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S6694.  Gene #612: 'DSG4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
DSG4 MUTATED 20 1 2 1
DSG4 WILD-TYPE 158 182 99 19

Figure S1989.  Get High-res Image Gene #612: 'DSG4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'DSG4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.518 (Fisher's exact test), Q value = 0.84

Table S6695.  Gene #612: 'DSG4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
DSG4 MUTATED 7 3 7
DSG4 WILD-TYPE 80 77 93
'DSG4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.247 (Fisher's exact test), Q value = 0.57

Table S6696.  Gene #612: 'DSG4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
DSG4 MUTATED 5 5 10
DSG4 WILD-TYPE 84 155 128
'DSG4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.288 (Fisher's exact test), Q value = 0.62

Table S6697.  Gene #612: 'DSG4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
DSG4 MUTATED 11 8 1
DSG4 WILD-TYPE 171 125 71
'DSG4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.853 (Fisher's exact test), Q value = 1

Table S6698.  Gene #612: 'DSG4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
DSG4 MUTATED 5 5 6 8
DSG4 WILD-TYPE 107 91 86 178
'DSG4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00039 (Fisher's exact test), Q value = 0.013

Table S6699.  Gene #612: 'DSG4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
DSG4 MUTATED 4 4 6 3 0 0 7
DSG4 WILD-TYPE 56 46 43 37 63 125 92

Figure S1990.  Get High-res Image Gene #612: 'DSG4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'DSG4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.299 (Fisher's exact test), Q value = 0.63

Table S6700.  Gene #612: 'DSG4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
DSG4 MUTATED 10 3 1 10
DSG4 WILD-TYPE 120 75 67 186
'DSG4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0189 (Fisher's exact test), Q value = 0.14

Table S6701.  Gene #612: 'DSG4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
DSG4 MUTATED 5 3 2 1 7 4 0 1 1
DSG4 WILD-TYPE 35 59 26 79 62 44 43 27 73

Figure S1991.  Get High-res Image Gene #612: 'DSG4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'DSG4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0143 (Fisher's exact test), Q value = 0.12

Table S6702.  Gene #612: 'DSG4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
DSG4 MUTATED 4 0 0 3
DSG4 WILD-TYPE 29 31 27 16

Figure S1992.  Get High-res Image Gene #612: 'DSG4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'DSG4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.234 (Fisher's exact test), Q value = 0.55

Table S6703.  Gene #612: 'DSG4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
DSG4 MUTATED 4 0 0 3
DSG4 WILD-TYPE 50 10 24 19
'PCDH12 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00916 (Fisher's exact test), Q value = 0.09

Table S6704.  Gene #613: 'PCDH12 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
PCDH12 MUTATED 2 1 0 5
PCDH12 WILD-TYPE 44 57 64 38

Figure S1993.  Get High-res Image Gene #613: 'PCDH12 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'PCDH12 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.31 (Fisher's exact test), Q value = 0.64

Table S6705.  Gene #613: 'PCDH12 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
PCDH12 MUTATED 4 2 2
PCDH12 WILD-TYPE 47 81 75
'PCDH12 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00064 (Fisher's exact test), Q value = 0.018

Table S6706.  Gene #613: 'PCDH12 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
PCDH12 MUTATED 16 4 0 0
PCDH12 WILD-TYPE 162 179 101 20

Figure S1994.  Get High-res Image Gene #613: 'PCDH12 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'PCDH12 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.533 (Fisher's exact test), Q value = 0.85

Table S6707.  Gene #613: 'PCDH12 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
PCDH12 MUTATED 4 2 6
PCDH12 WILD-TYPE 83 78 94
'PCDH12 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.583 (Fisher's exact test), Q value = 0.89

Table S6708.  Gene #613: 'PCDH12 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
PCDH12 MUTATED 5 5 6
PCDH12 WILD-TYPE 84 155 132
'PCDH12 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.147 (Fisher's exact test), Q value = 0.43

Table S6709.  Gene #613: 'PCDH12 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
PCDH12 MUTATED 4 7 5
PCDH12 WILD-TYPE 178 126 67
'PCDH12 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.435 (Fisher's exact test), Q value = 0.76

Table S6710.  Gene #613: 'PCDH12 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
PCDH12 MUTATED 2 6 4 8
PCDH12 WILD-TYPE 110 90 88 178
'PCDH12 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00419 (Fisher's exact test), Q value = 0.059

Table S6711.  Gene #613: 'PCDH12 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
PCDH12 MUTATED 2 0 8 1 2 2 5
PCDH12 WILD-TYPE 58 50 41 39 61 123 94

Figure S1995.  Get High-res Image Gene #613: 'PCDH12 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'PCDH12 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.232 (Fisher's exact test), Q value = 0.55

Table S6712.  Gene #613: 'PCDH12 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
PCDH12 MUTATED 7 4 0 9
PCDH12 WILD-TYPE 123 74 68 187
'PCDH12 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.14 (Fisher's exact test), Q value = 0.42

Table S6713.  Gene #613: 'PCDH12 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
PCDH12 MUTATED 2 4 1 1 7 1 0 2 2
PCDH12 WILD-TYPE 38 58 27 79 62 47 43 26 72
'EAPP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.482 (Fisher's exact test), Q value = 0.81

Table S6714.  Gene #614: 'EAPP MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
EAPP MUTATED 2 4 0 0
EAPP WILD-TYPE 176 179 101 20
'EAPP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.642 (Fisher's exact test), Q value = 0.93

Table S6715.  Gene #614: 'EAPP MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
EAPP MUTATED 0 1 2
EAPP WILD-TYPE 87 79 98
'EAPP MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.849 (Fisher's exact test), Q value = 1

Table S6716.  Gene #614: 'EAPP MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
EAPP MUTATED 1 3 1
EAPP WILD-TYPE 88 157 137
'EAPP MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.341 (Fisher's exact test), Q value = 0.67

Table S6717.  Gene #614: 'EAPP MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
EAPP MUTATED 1 3 1
EAPP WILD-TYPE 181 130 71
'EAPP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.315 (Fisher's exact test), Q value = 0.64

Table S6718.  Gene #614: 'EAPP MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
EAPP MUTATED 1 3 0 2
EAPP WILD-TYPE 111 93 92 184
'EAPP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.156 (Fisher's exact test), Q value = 0.45

Table S6719.  Gene #614: 'EAPP MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
EAPP MUTATED 1 3 0 0 0 1 1
EAPP WILD-TYPE 59 47 49 40 63 124 98
'EAPP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.509 (Fisher's exact test), Q value = 0.83

Table S6720.  Gene #614: 'EAPP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
EAPP MUTATED 3 0 0 3
EAPP WILD-TYPE 127 78 68 193
'EAPP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.17 (Fisher's exact test), Q value = 0.47

Table S6721.  Gene #614: 'EAPP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
EAPP MUTATED 2 0 1 0 2 0 0 0 1
EAPP WILD-TYPE 38 62 27 80 67 48 43 28 73
'SLC7A10 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00482 (Fisher's exact test), Q value = 0.063

Table S6722.  Gene #615: 'SLC7A10 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
SLC7A10 MUTATED 8 0 0 0
SLC7A10 WILD-TYPE 170 183 101 20

Figure S1996.  Get High-res Image Gene #615: 'SLC7A10 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'SLC7A10 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.291 (Fisher's exact test), Q value = 0.62

Table S6723.  Gene #615: 'SLC7A10 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
SLC7A10 MUTATED 3 0 3
SLC7A10 WILD-TYPE 84 80 97
'SLC7A10 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.904 (Fisher's exact test), Q value = 1

Table S6724.  Gene #615: 'SLC7A10 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
SLC7A10 MUTATED 1 4 3
SLC7A10 WILD-TYPE 88 156 135
'SLC7A10 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.723 (Fisher's exact test), Q value = 0.99

Table S6725.  Gene #615: 'SLC7A10 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
SLC7A10 MUTATED 3 3 2
SLC7A10 WILD-TYPE 179 130 70
'SLC7A10 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0662 (Fisher's exact test), Q value = 0.28

Table S6726.  Gene #615: 'SLC7A10 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
SLC7A10 MUTATED 0 2 4 2
SLC7A10 WILD-TYPE 112 94 88 184
'SLC7A10 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 8e-05 (Fisher's exact test), Q value = 0.0045

Table S6727.  Gene #615: 'SLC7A10 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
SLC7A10 MUTATED 0 0 6 0 0 0 2
SLC7A10 WILD-TYPE 60 50 43 40 63 125 97

Figure S1997.  Get High-res Image Gene #615: 'SLC7A10 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'SLC7A10 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.636 (Fisher's exact test), Q value = 0.93

Table S6728.  Gene #615: 'SLC7A10 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
SLC7A10 MUTATED 3 2 0 3
SLC7A10 WILD-TYPE 127 76 68 193
'SLC7A10 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00883 (Fisher's exact test), Q value = 0.088

Table S6729.  Gene #615: 'SLC7A10 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
SLC7A10 MUTATED 0 3 0 0 5 0 0 0 0
SLC7A10 WILD-TYPE 40 59 28 80 64 48 43 28 74

Figure S1998.  Get High-res Image Gene #615: 'SLC7A10 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'SLC7A10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.135 (Fisher's exact test), Q value = 0.41

Table S6730.  Gene #615: 'SLC7A10 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
SLC7A10 MUTATED 1 0 0 2
SLC7A10 WILD-TYPE 32 31 27 17
'SLC7A10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.449 (Fisher's exact test), Q value = 0.77

Table S6731.  Gene #615: 'SLC7A10 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
SLC7A10 MUTATED 1 0 2 0
SLC7A10 WILD-TYPE 53 10 22 22
'ZNF711 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.333 (Fisher's exact test), Q value = 0.66

Table S6732.  Gene #616: 'ZNF711 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ZNF711 MUTATED 6 3 1 1
ZNF711 WILD-TYPE 172 180 100 19
'ZNF711 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.48 (Fisher's exact test), Q value = 0.81

Table S6733.  Gene #616: 'ZNF711 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ZNF711 MUTATED 4 1 4
ZNF711 WILD-TYPE 83 79 96
'ZNF711 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.676 (Fisher's exact test), Q value = 0.96

Table S6734.  Gene #616: 'ZNF711 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ZNF711 MUTATED 3 3 5
ZNF711 WILD-TYPE 86 157 133
'ZNF711 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.134 (Fisher's exact test), Q value = 0.41

Table S6735.  Gene #616: 'ZNF711 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ZNF711 MUTATED 8 1 2
ZNF711 WILD-TYPE 174 132 70
'ZNF711 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0193 (Fisher's exact test), Q value = 0.14

Table S6736.  Gene #616: 'ZNF711 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ZNF711 MUTATED 2 2 6 1
ZNF711 WILD-TYPE 110 94 86 185

Figure S1999.  Get High-res Image Gene #616: 'ZNF711 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'ZNF711 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0181 (Fisher's exact test), Q value = 0.13

Table S6737.  Gene #616: 'ZNF711 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ZNF711 MUTATED 1 0 4 1 3 0 2
ZNF711 WILD-TYPE 59 50 45 39 60 125 97

Figure S2000.  Get High-res Image Gene #616: 'ZNF711 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ZNF711 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.123 (Fisher's exact test), Q value = 0.39

Table S6738.  Gene #616: 'ZNF711 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ZNF711 MUTATED 5 3 0 2
ZNF711 WILD-TYPE 125 75 68 194
'ZNF711 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.42 (Fisher's exact test), Q value = 0.75

Table S6739.  Gene #616: 'ZNF711 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ZNF711 MUTATED 1 3 1 2 2 0 0 1 0
ZNF711 WILD-TYPE 39 59 27 78 67 48 43 27 74
'ZNF711 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.083 (Fisher's exact test), Q value = 0.31

Table S6740.  Gene #616: 'ZNF711 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
ZNF711 MUTATED 0 1 0 2
ZNF711 WILD-TYPE 33 30 27 17
'ZNF711 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.563 (Fisher's exact test), Q value = 0.87

Table S6741.  Gene #616: 'ZNF711 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
ZNF711 MUTATED 3 0 0 0
ZNF711 WILD-TYPE 51 10 24 22
'REXO4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0435 (Fisher's exact test), Q value = 0.22

Table S6742.  Gene #617: 'REXO4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
REXO4 MUTATED 5 0 0 0
REXO4 WILD-TYPE 173 183 101 20

Figure S2001.  Get High-res Image Gene #617: 'REXO4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'REXO4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.11 (Fisher's exact test), Q value = 0.37

Table S6743.  Gene #617: 'REXO4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
REXO4 MUTATED 0 0 3
REXO4 WILD-TYPE 87 80 97
'REXO4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0815 (Fisher's exact test), Q value = 0.31

Table S6744.  Gene #617: 'REXO4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
REXO4 MUTATED 3 2 0
REXO4 WILD-TYPE 86 158 138
'REXO4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.851 (Fisher's exact test), Q value = 1

Table S6745.  Gene #617: 'REXO4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
REXO4 MUTATED 3 1 1
REXO4 WILD-TYPE 179 132 71
'REXO4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.493 (Fisher's exact test), Q value = 0.82

Table S6746.  Gene #617: 'REXO4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
REXO4 MUTATED 0 2 1 2
REXO4 WILD-TYPE 112 94 91 184
'REXO4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.116 (Fisher's exact test), Q value = 0.38

Table S6747.  Gene #617: 'REXO4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
REXO4 MUTATED 0 1 2 0 0 0 2
REXO4 WILD-TYPE 60 49 47 40 63 125 97
'REXO4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.507 (Fisher's exact test), Q value = 0.83

Table S6748.  Gene #617: 'REXO4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
REXO4 MUTATED 3 0 0 2
REXO4 WILD-TYPE 127 78 68 194
'REXO4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.213 (Fisher's exact test), Q value = 0.52

Table S6749.  Gene #617: 'REXO4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
REXO4 MUTATED 1 1 0 0 3 0 0 0 0
REXO4 WILD-TYPE 39 61 28 80 66 48 43 28 74
'ABCB4 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00038 (Fisher's exact test), Q value = 0.013

Table S6750.  Gene #618: 'ABCB4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ABCB4 MUTATED 2 0 0 6
ABCB4 WILD-TYPE 44 58 64 37

Figure S2002.  Get High-res Image Gene #618: 'ABCB4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'ABCB4 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.251 (Fisher's exact test), Q value = 0.58

Table S6751.  Gene #618: 'ABCB4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ABCB4 MUTATED 3 1 4
ABCB4 WILD-TYPE 48 82 73
'ABCB4 MUTATION STATUS' versus 'CN_CNMF'

P value = 5e-05 (Fisher's exact test), Q value = 0.0032

Table S6752.  Gene #618: 'ABCB4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ABCB4 MUTATED 21 3 1 1
ABCB4 WILD-TYPE 157 180 100 19

Figure S2003.  Get High-res Image Gene #618: 'ABCB4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ABCB4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.378 (Fisher's exact test), Q value = 0.71

Table S6753.  Gene #618: 'ABCB4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ABCB4 MUTATED 8 3 7
ABCB4 WILD-TYPE 79 77 93
'ABCB4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.17 (Fisher's exact test), Q value = 0.47

Table S6754.  Gene #618: 'ABCB4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ABCB4 MUTATED 2 11 11
ABCB4 WILD-TYPE 87 149 127
'ABCB4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.3 (Fisher's exact test), Q value = 0.63

Table S6755.  Gene #618: 'ABCB4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ABCB4 MUTATED 11 11 2
ABCB4 WILD-TYPE 171 122 70
'ABCB4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.221 (Fisher's exact test), Q value = 0.53

Table S6756.  Gene #618: 'ABCB4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ABCB4 MUTATED 3 7 8 9
ABCB4 WILD-TYPE 109 89 84 177
'ABCB4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00354 (Fisher's exact test), Q value = 0.054

Table S6757.  Gene #618: 'ABCB4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ABCB4 MUTATED 3 3 8 0 2 2 9
ABCB4 WILD-TYPE 57 47 41 40 61 123 90

Figure S2004.  Get High-res Image Gene #618: 'ABCB4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ABCB4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.472 (Fisher's exact test), Q value = 0.8

Table S6758.  Gene #618: 'ABCB4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ABCB4 MUTATED 8 5 1 11
ABCB4 WILD-TYPE 122 73 67 185
'ABCB4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0855 (Fisher's exact test), Q value = 0.32

Table S6759.  Gene #618: 'ABCB4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ABCB4 MUTATED 2 6 2 4 8 0 1 0 2
ABCB4 WILD-TYPE 38 56 26 76 61 48 42 28 72
'ABCB4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0153 (Fisher's exact test), Q value = 0.12

Table S6760.  Gene #618: 'ABCB4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
ABCB4 MUTATED 1 0 1 4
ABCB4 WILD-TYPE 32 31 26 15

Figure S2005.  Get High-res Image Gene #618: 'ABCB4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'ABCB4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.395 (Fisher's exact test), Q value = 0.72

Table S6761.  Gene #618: 'ABCB4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
ABCB4 MUTATED 3 1 2 0
ABCB4 WILD-TYPE 51 9 22 22
'FAAH2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.869 (Fisher's exact test), Q value = 1

Table S6762.  Gene #619: 'FAAH2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
FAAH2 MUTATED 2 1 1 1
FAAH2 WILD-TYPE 44 57 63 42
'FAAH2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0885 (Fisher's exact test), Q value = 0.32

Table S6763.  Gene #619: 'FAAH2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
FAAH2 MUTATED 3 2 0
FAAH2 WILD-TYPE 48 81 77
'FAAH2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.369 (Fisher's exact test), Q value = 0.7

Table S6764.  Gene #619: 'FAAH2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
FAAH2 MUTATED 4 8 1 0
FAAH2 WILD-TYPE 174 175 100 20
'FAAH2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.199 (Fisher's exact test), Q value = 0.5

Table S6765.  Gene #619: 'FAAH2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
FAAH2 MUTATED 1 5 3
FAAH2 WILD-TYPE 86 75 97
'FAAH2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0627 (Fisher's exact test), Q value = 0.27

Table S6766.  Gene #619: 'FAAH2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
FAAH2 MUTATED 1 9 2
FAAH2 WILD-TYPE 88 151 136
'FAAH2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0698 (Fisher's exact test), Q value = 0.28

Table S6767.  Gene #619: 'FAAH2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
FAAH2 MUTATED 3 8 1
FAAH2 WILD-TYPE 179 125 71
'FAAH2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.334 (Fisher's exact test), Q value = 0.66

Table S6768.  Gene #619: 'FAAH2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
FAAH2 MUTATED 4 5 1 4
FAAH2 WILD-TYPE 108 91 91 182
'FAAH2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.51 (Fisher's exact test), Q value = 0.83

Table S6769.  Gene #619: 'FAAH2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
FAAH2 MUTATED 2 3 0 2 2 2 3
FAAH2 WILD-TYPE 58 47 49 38 61 123 96
'FAAH2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0882 (Fisher's exact test), Q value = 0.32

Table S6770.  Gene #619: 'FAAH2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
FAAH2 MUTATED 6 0 3 3
FAAH2 WILD-TYPE 124 78 65 193
'FAAH2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0969 (Fisher's exact test), Q value = 0.34

Table S6771.  Gene #619: 'FAAH2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
FAAH2 MUTATED 2 1 0 1 3 1 4 0 0
FAAH2 WILD-TYPE 38 61 28 79 66 47 39 28 74
'FAAH2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S6772.  Gene #619: 'FAAH2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
FAAH2 MUTATED 1 1 1 0
FAAH2 WILD-TYPE 32 30 26 19
'FAAH2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.693 (Fisher's exact test), Q value = 0.97

Table S6773.  Gene #619: 'FAAH2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
FAAH2 MUTATED 1 0 1 1
FAAH2 WILD-TYPE 53 10 23 21
'RASAL2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.134 (Fisher's exact test), Q value = 0.41

Table S6774.  Gene #620: 'RASAL2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
RASAL2 MUTATED 3 0 2 3
RASAL2 WILD-TYPE 43 58 62 40
'RASAL2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0616 (Fisher's exact test), Q value = 0.27

Table S6775.  Gene #620: 'RASAL2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
RASAL2 MUTATED 5 2 1
RASAL2 WILD-TYPE 46 81 76
'RASAL2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0877 (Fisher's exact test), Q value = 0.32

Table S6776.  Gene #620: 'RASAL2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
RASAL2 MUTATED 10 2 3 0
RASAL2 WILD-TYPE 168 181 98 20
'RASAL2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S6777.  Gene #620: 'RASAL2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
RASAL2 MUTATED 3 2 3
RASAL2 WILD-TYPE 84 78 97
'RASAL2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.115 (Fisher's exact test), Q value = 0.38

Table S6778.  Gene #620: 'RASAL2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
RASAL2 MUTATED 2 3 9
RASAL2 WILD-TYPE 87 157 129
'RASAL2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0495 (Fisher's exact test), Q value = 0.24

Table S6779.  Gene #620: 'RASAL2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
RASAL2 MUTATED 9 1 4
RASAL2 WILD-TYPE 173 132 68

Figure S2006.  Get High-res Image Gene #620: 'RASAL2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'RASAL2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.659 (Fisher's exact test), Q value = 0.95

Table S6780.  Gene #620: 'RASAL2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
RASAL2 MUTATED 3 2 5 6
RASAL2 WILD-TYPE 109 94 87 180
'RASAL2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.344 (Fisher's exact test), Q value = 0.67

Table S6781.  Gene #620: 'RASAL2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
RASAL2 MUTATED 2 2 3 0 1 2 6
RASAL2 WILD-TYPE 58 48 46 40 62 123 93
'RASAL2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.674 (Fisher's exact test), Q value = 0.96

Table S6782.  Gene #620: 'RASAL2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
RASAL2 MUTATED 6 2 1 5
RASAL2 WILD-TYPE 124 76 67 191
'RASAL2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.416 (Fisher's exact test), Q value = 0.74

Table S6783.  Gene #620: 'RASAL2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
RASAL2 MUTATED 1 4 2 1 2 2 0 1 1
RASAL2 WILD-TYPE 39 58 26 79 67 46 43 27 73
'ATAD5 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00103 (Fisher's exact test), Q value = 0.025

Table S6784.  Gene #621: 'ATAD5 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ATAD5 MUTATED 3 0 0 5
ATAD5 WILD-TYPE 43 58 64 38

Figure S2007.  Get High-res Image Gene #621: 'ATAD5 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'ATAD5 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.308 (Fisher's exact test), Q value = 0.64

Table S6785.  Gene #621: 'ATAD5 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ATAD5 MUTATED 4 2 2
ATAD5 WILD-TYPE 47 81 75
'ATAD5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00039 (Fisher's exact test), Q value = 0.013

Table S6786.  Gene #621: 'ATAD5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ATAD5 MUTATED 19 2 4 0
ATAD5 WILD-TYPE 159 181 97 20

Figure S2008.  Get High-res Image Gene #621: 'ATAD5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ATAD5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.283 (Fisher's exact test), Q value = 0.61

Table S6787.  Gene #621: 'ATAD5 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ATAD5 MUTATED 6 2 8
ATAD5 WILD-TYPE 81 78 92
'ATAD5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.57 (Fisher's exact test), Q value = 0.88

Table S6788.  Gene #621: 'ATAD5 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ATAD5 MUTATED 3 7 9
ATAD5 WILD-TYPE 86 153 129
'ATAD5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.907 (Fisher's exact test), Q value = 1

Table S6789.  Gene #621: 'ATAD5 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ATAD5 MUTATED 9 6 4
ATAD5 WILD-TYPE 173 127 68
'ATAD5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0478 (Fisher's exact test), Q value = 0.23

Table S6790.  Gene #621: 'ATAD5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ATAD5 MUTATED 2 10 5 8
ATAD5 WILD-TYPE 110 86 87 178

Figure S2009.  Get High-res Image Gene #621: 'ATAD5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'ATAD5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 6e-05 (Fisher's exact test), Q value = 0.0037

Table S6791.  Gene #621: 'ATAD5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ATAD5 MUTATED 1 2 11 2 2 1 6
ATAD5 WILD-TYPE 59 48 38 38 61 124 93

Figure S2010.  Get High-res Image Gene #621: 'ATAD5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ATAD5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.538 (Fisher's exact test), Q value = 0.86

Table S6792.  Gene #621: 'ATAD5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ATAD5 MUTATED 10 3 2 10
ATAD5 WILD-TYPE 120 75 66 186
'ATAD5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 2e-04 (Fisher's exact test), Q value = 0.0083

Table S6793.  Gene #621: 'ATAD5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ATAD5 MUTATED 1 4 3 2 12 0 2 1 0
ATAD5 WILD-TYPE 39 58 25 78 57 48 41 27 74

Figure S2011.  Get High-res Image Gene #621: 'ATAD5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'ATAD5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 2e-05 (Fisher's exact test), Q value = 0.0017

Table S6794.  Gene #621: 'ATAD5 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
ATAD5 MUTATED 0 0 1 7
ATAD5 WILD-TYPE 33 31 26 12

Figure S2012.  Get High-res Image Gene #621: 'ATAD5 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'ATAD5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.166 (Fisher's exact test), Q value = 0.46

Table S6795.  Gene #621: 'ATAD5 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
ATAD5 MUTATED 4 0 4 0
ATAD5 WILD-TYPE 50 10 20 22
'ZNF14 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0162 (Fisher's exact test), Q value = 0.13

Table S6796.  Gene #622: 'ZNF14 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ZNF14 MUTATED 1 0 0 3
ZNF14 WILD-TYPE 45 58 64 40

Figure S2013.  Get High-res Image Gene #622: 'ZNF14 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'ZNF14 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S6797.  Gene #622: 'ZNF14 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ZNF14 MUTATED 1 2 1
ZNF14 WILD-TYPE 50 81 76
'ZNF14 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00104 (Fisher's exact test), Q value = 0.025

Table S6798.  Gene #622: 'ZNF14 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ZNF14 MUTATED 9 1 1 3
ZNF14 WILD-TYPE 169 182 100 17

Figure S2014.  Get High-res Image Gene #622: 'ZNF14 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ZNF14 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.476 (Fisher's exact test), Q value = 0.8

Table S6799.  Gene #622: 'ZNF14 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ZNF14 MUTATED 4 1 4
ZNF14 WILD-TYPE 83 79 96
'ZNF14 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.423 (Fisher's exact test), Q value = 0.75

Table S6800.  Gene #622: 'ZNF14 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ZNF14 MUTATED 1 5 6
ZNF14 WILD-TYPE 88 155 132
'ZNF14 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S6801.  Gene #622: 'ZNF14 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ZNF14 MUTATED 6 4 2
ZNF14 WILD-TYPE 176 129 70
'ZNF14 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.516 (Fisher's exact test), Q value = 0.84

Table S6802.  Gene #622: 'ZNF14 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ZNF14 MUTATED 2 4 4 4
ZNF14 WILD-TYPE 110 92 88 182
'ZNF14 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.204 (Fisher's exact test), Q value = 0.51

Table S6803.  Gene #622: 'ZNF14 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ZNF14 MUTATED 1 3 2 1 4 1 2
ZNF14 WILD-TYPE 59 47 47 39 59 124 97
'ZNF14 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.026 (Fisher's exact test), Q value = 0.16

Table S6804.  Gene #622: 'ZNF14 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ZNF14 MUTATED 4 6 0 3
ZNF14 WILD-TYPE 126 72 68 193

Figure S2015.  Get High-res Image Gene #622: 'ZNF14 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'ZNF14 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00835 (Fisher's exact test), Q value = 0.085

Table S6805.  Gene #622: 'ZNF14 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ZNF14 MUTATED 5 2 2 1 1 2 0 0 0
ZNF14 WILD-TYPE 35 60 26 79 68 46 43 28 74

Figure S2016.  Get High-res Image Gene #622: 'ZNF14 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'ZNF14 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.491 (Fisher's exact test), Q value = 0.82

Table S6806.  Gene #622: 'ZNF14 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
ZNF14 MUTATED 3 1 0 1
ZNF14 WILD-TYPE 30 30 27 18
'ZNF14 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.638 (Fisher's exact test), Q value = 0.93

Table S6807.  Gene #622: 'ZNF14 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
ZNF14 MUTATED 4 0 0 1
ZNF14 WILD-TYPE 50 10 24 21
'NAP1L1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.247 (Fisher's exact test), Q value = 0.57

Table S6808.  Gene #623: 'NAP1L1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
NAP1L1 MUTATED 6 3 0 0
NAP1L1 WILD-TYPE 172 180 101 20
'NAP1L1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.905 (Fisher's exact test), Q value = 1

Table S6809.  Gene #623: 'NAP1L1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
NAP1L1 MUTATED 2 3 3
NAP1L1 WILD-TYPE 85 77 97
'NAP1L1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.142 (Fisher's exact test), Q value = 0.42

Table S6810.  Gene #623: 'NAP1L1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
NAP1L1 MUTATED 0 1 4
NAP1L1 WILD-TYPE 89 159 134
'NAP1L1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.718 (Fisher's exact test), Q value = 0.99

Table S6811.  Gene #623: 'NAP1L1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
NAP1L1 MUTATED 3 2 0
NAP1L1 WILD-TYPE 179 131 72
'NAP1L1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.254 (Fisher's exact test), Q value = 0.58

Table S6812.  Gene #623: 'NAP1L1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
NAP1L1 MUTATED 3 3 2 1
NAP1L1 WILD-TYPE 109 93 90 185
'NAP1L1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0858 (Fisher's exact test), Q value = 0.32

Table S6813.  Gene #623: 'NAP1L1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
NAP1L1 MUTATED 2 3 1 1 1 0 1
NAP1L1 WILD-TYPE 58 47 48 39 62 125 98
'NAP1L1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.417 (Fisher's exact test), Q value = 0.75

Table S6814.  Gene #623: 'NAP1L1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
NAP1L1 MUTATED 4 1 2 2
NAP1L1 WILD-TYPE 126 77 66 194
'NAP1L1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.875 (Fisher's exact test), Q value = 1

Table S6815.  Gene #623: 'NAP1L1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
NAP1L1 MUTATED 2 1 0 2 2 0 1 0 1
NAP1L1 WILD-TYPE 38 61 28 78 67 48 42 28 73
'CHRM3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.127 (Fisher's exact test), Q value = 0.4

Table S6816.  Gene #624: 'CHRM3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
CHRM3 MUTATED 7 2 5 1
CHRM3 WILD-TYPE 171 181 96 19
'CHRM3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.398 (Fisher's exact test), Q value = 0.72

Table S6817.  Gene #624: 'CHRM3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
CHRM3 MUTATED 6 2 4
CHRM3 WILD-TYPE 81 78 96
'CHRM3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.938 (Fisher's exact test), Q value = 1

Table S6818.  Gene #624: 'CHRM3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
CHRM3 MUTATED 3 5 6
CHRM3 WILD-TYPE 86 155 132
'CHRM3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.88 (Fisher's exact test), Q value = 1

Table S6819.  Gene #624: 'CHRM3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
CHRM3 MUTATED 7 4 3
CHRM3 WILD-TYPE 175 129 69
'CHRM3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.194 (Fisher's exact test), Q value = 0.5

Table S6820.  Gene #624: 'CHRM3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
CHRM3 MUTATED 3 3 6 3
CHRM3 WILD-TYPE 109 93 86 183
'CHRM3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0355 (Fisher's exact test), Q value = 0.2

Table S6821.  Gene #624: 'CHRM3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
CHRM3 MUTATED 1 2 2 2 5 0 3
CHRM3 WILD-TYPE 59 48 47 38 58 125 96

Figure S2017.  Get High-res Image Gene #624: 'CHRM3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CHRM3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0193 (Fisher's exact test), Q value = 0.14

Table S6822.  Gene #624: 'CHRM3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
CHRM3 MUTATED 3 7 1 3
CHRM3 WILD-TYPE 127 71 67 193

Figure S2018.  Get High-res Image Gene #624: 'CHRM3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'CHRM3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.317 (Fisher's exact test), Q value = 0.65

Table S6823.  Gene #624: 'CHRM3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
CHRM3 MUTATED 2 3 1 1 4 1 2 0 0
CHRM3 WILD-TYPE 38 59 27 79 65 47 41 28 74
'CHRM3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.692 (Fisher's exact test), Q value = 0.97

Table S6824.  Gene #624: 'CHRM3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
CHRM3 MUTATED 1 2 1 2
CHRM3 WILD-TYPE 32 29 26 17
'CHRM3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.335 (Fisher's exact test), Q value = 0.66

Table S6825.  Gene #624: 'CHRM3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
CHRM3 MUTATED 3 1 0 2
CHRM3 WILD-TYPE 51 9 24 20
'GPR87 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0744 (Fisher's exact test), Q value = 0.29

Table S6826.  Gene #625: 'GPR87 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
GPR87 MUTATED 2 0 0 2
GPR87 WILD-TYPE 44 58 64 41
'GPR87 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0394 (Fisher's exact test), Q value = 0.21

Table S6827.  Gene #625: 'GPR87 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
GPR87 MUTATED 3 0 1
GPR87 WILD-TYPE 48 83 76

Figure S2019.  Get High-res Image Gene #625: 'GPR87 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'GPR87 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00803 (Fisher's exact test), Q value = 0.084

Table S6828.  Gene #625: 'GPR87 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
GPR87 MUTATED 9 0 2 0
GPR87 WILD-TYPE 169 183 99 20

Figure S2020.  Get High-res Image Gene #625: 'GPR87 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'GPR87 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.681 (Fisher's exact test), Q value = 0.96

Table S6829.  Gene #625: 'GPR87 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
GPR87 MUTATED 3 1 2
GPR87 WILD-TYPE 84 79 98
'GPR87 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.141 (Fisher's exact test), Q value = 0.42

Table S6830.  Gene #625: 'GPR87 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
GPR87 MUTATED 0 2 5
GPR87 WILD-TYPE 89 158 133
'GPR87 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.19 (Fisher's exact test), Q value = 0.49

Table S6831.  Gene #625: 'GPR87 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
GPR87 MUTATED 6 1 0
GPR87 WILD-TYPE 176 132 72
'GPR87 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.461 (Fisher's exact test), Q value = 0.79

Table S6832.  Gene #625: 'GPR87 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
GPR87 MUTATED 1 2 4 4
GPR87 WILD-TYPE 111 94 88 182
'GPR87 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.33 (Fisher's exact test), Q value = 0.66

Table S6833.  Gene #625: 'GPR87 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
GPR87 MUTATED 1 2 3 0 1 1 3
GPR87 WILD-TYPE 59 48 46 40 62 124 96
'GPR87 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.784 (Fisher's exact test), Q value = 1

Table S6834.  Gene #625: 'GPR87 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
GPR87 MUTATED 3 3 1 4
GPR87 WILD-TYPE 127 75 67 192
'GPR87 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.578 (Fisher's exact test), Q value = 0.88

Table S6835.  Gene #625: 'GPR87 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
GPR87 MUTATED 0 3 1 1 3 0 1 1 1
GPR87 WILD-TYPE 40 59 27 79 66 48 42 27 73
'AKR1C4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.74 (Fisher's exact test), Q value = 1

Table S6836.  Gene #626: 'AKR1C4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
AKR1C4 MUTATED 6 3 2 0
AKR1C4 WILD-TYPE 172 180 99 20
'AKR1C4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.603 (Fisher's exact test), Q value = 0.91

Table S6837.  Gene #626: 'AKR1C4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
AKR1C4 MUTATED 3 1 4
AKR1C4 WILD-TYPE 84 79 96
'AKR1C4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.874 (Fisher's exact test), Q value = 1

Table S6838.  Gene #626: 'AKR1C4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
AKR1C4 MUTATED 1 2 3
AKR1C4 WILD-TYPE 88 158 135
'AKR1C4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.579 (Fisher's exact test), Q value = 0.88

Table S6839.  Gene #626: 'AKR1C4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
AKR1C4 MUTATED 3 3 0
AKR1C4 WILD-TYPE 179 130 72
'AKR1C4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.372 (Fisher's exact test), Q value = 0.7

Table S6840.  Gene #626: 'AKR1C4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
AKR1C4 MUTATED 3 4 2 2
AKR1C4 WILD-TYPE 109 92 90 184
'AKR1C4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.217 (Fisher's exact test), Q value = 0.53

Table S6841.  Gene #626: 'AKR1C4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
AKR1C4 MUTATED 1 4 1 1 1 1 2
AKR1C4 WILD-TYPE 59 46 48 39 62 124 97
'AKR1C4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.303 (Fisher's exact test), Q value = 0.63

Table S6842.  Gene #626: 'AKR1C4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
AKR1C4 MUTATED 4 3 2 2
AKR1C4 WILD-TYPE 126 75 66 194
'AKR1C4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.336 (Fisher's exact test), Q value = 0.66

Table S6843.  Gene #626: 'AKR1C4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
AKR1C4 MUTATED 2 2 2 1 1 1 1 1 0
AKR1C4 WILD-TYPE 38 60 26 79 68 47 42 27 74
'AKR1C4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.865 (Fisher's exact test), Q value = 1

Table S6844.  Gene #626: 'AKR1C4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
AKR1C4 MUTATED 1 1 2 1
AKR1C4 WILD-TYPE 32 30 25 18
'AKR1C4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.822 (Fisher's exact test), Q value = 1

Table S6845.  Gene #626: 'AKR1C4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
AKR1C4 MUTATED 2 0 1 2
AKR1C4 WILD-TYPE 52 10 23 20
'E2F6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.295 (Fisher's exact test), Q value = 0.62

Table S6846.  Gene #627: 'E2F6 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
E2F6 MUTATED 0 2 2 0
E2F6 WILD-TYPE 178 181 99 20
'E2F6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0716 (Fisher's exact test), Q value = 0.29

Table S6847.  Gene #627: 'E2F6 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
E2F6 MUTATED 1 3 0
E2F6 WILD-TYPE 86 77 100
'E2F6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.454 (Fisher's exact test), Q value = 0.78

Table S6848.  Gene #627: 'E2F6 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
E2F6 MUTATED 1 2 0
E2F6 WILD-TYPE 88 158 138
'E2F6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.588 (Fisher's exact test), Q value = 0.89

Table S6849.  Gene #627: 'E2F6 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
E2F6 MUTATED 1 2 0
E2F6 WILD-TYPE 181 131 72
'E2F6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.204 (Fisher's exact test), Q value = 0.51

Table S6850.  Gene #627: 'E2F6 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
E2F6 MUTATED 2 1 1 0
E2F6 WILD-TYPE 110 95 91 186
'E2F6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.157 (Fisher's exact test), Q value = 0.45

Table S6851.  Gene #627: 'E2F6 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
E2F6 MUTATED 1 1 0 1 1 0 0
E2F6 WILD-TYPE 59 49 49 39 62 125 99
'E2F6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.186 (Fisher's exact test), Q value = 0.49

Table S6852.  Gene #627: 'E2F6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
E2F6 MUTATED 2 1 1 0
E2F6 WILD-TYPE 128 77 67 196
'E2F6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.611 (Fisher's exact test), Q value = 0.91

Table S6853.  Gene #627: 'E2F6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
E2F6 MUTATED 1 1 0 2 0 0 0 0 0
E2F6 WILD-TYPE 39 61 28 78 69 48 43 28 74
'E2F6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S6854.  Gene #627: 'E2F6 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
E2F6 MUTATED 1 1 1 0
E2F6 WILD-TYPE 32 30 26 19
'E2F6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S6855.  Gene #627: 'E2F6 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
E2F6 MUTATED 2 0 1 0
E2F6 WILD-TYPE 52 10 23 22
'PRKCI MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0266 (Fisher's exact test), Q value = 0.17

Table S6856.  Gene #628: 'PRKCI MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
PRKCI MUTATED 3 0 0 2
PRKCI WILD-TYPE 43 58 64 41

Figure S2021.  Get High-res Image Gene #628: 'PRKCI MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'PRKCI MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0886 (Fisher's exact test), Q value = 0.32

Table S6857.  Gene #628: 'PRKCI MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
PRKCI MUTATED 3 2 0
PRKCI WILD-TYPE 48 81 77
'PRKCI MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0654 (Fisher's exact test), Q value = 0.28

Table S6858.  Gene #628: 'PRKCI MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
PRKCI MUTATED 13 4 2 0
PRKCI WILD-TYPE 165 179 99 20
'PRKCI MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.16 (Fisher's exact test), Q value = 0.45

Table S6859.  Gene #628: 'PRKCI MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
PRKCI MUTATED 4 2 9
PRKCI WILD-TYPE 83 78 91
'PRKCI MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.625 (Fisher's exact test), Q value = 0.92

Table S6860.  Gene #628: 'PRKCI MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
PRKCI MUTATED 2 8 7
PRKCI WILD-TYPE 87 152 131
'PRKCI MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.109 (Fisher's exact test), Q value = 0.37

Table S6861.  Gene #628: 'PRKCI MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
PRKCI MUTATED 6 10 1
PRKCI WILD-TYPE 176 123 71
'PRKCI MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0571 (Fisher's exact test), Q value = 0.26

Table S6862.  Gene #628: 'PRKCI MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
PRKCI MUTATED 2 9 3 6
PRKCI WILD-TYPE 110 87 89 180
'PRKCI MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00925 (Fisher's exact test), Q value = 0.09

Table S6863.  Gene #628: 'PRKCI MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
PRKCI MUTATED 1 6 4 0 3 1 5
PRKCI WILD-TYPE 59 44 45 40 60 124 94

Figure S2022.  Get High-res Image Gene #628: 'PRKCI MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'PRKCI MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.655 (Fisher's exact test), Q value = 0.94

Table S6864.  Gene #628: 'PRKCI MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
PRKCI MUTATED 8 2 2 8
PRKCI WILD-TYPE 122 76 66 188
'PRKCI MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0803 (Fisher's exact test), Q value = 0.31

Table S6865.  Gene #628: 'PRKCI MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
PRKCI MUTATED 2 0 2 6 6 0 2 0 2
PRKCI WILD-TYPE 38 62 26 74 63 48 41 28 72
'PRKCI MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S6866.  Gene #628: 'PRKCI MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
PRKCI MUTATED 1 1 1 0
PRKCI WILD-TYPE 32 30 26 19
'PRKCI MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.379 (Fisher's exact test), Q value = 0.71

Table S6867.  Gene #628: 'PRKCI MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
PRKCI MUTATED 2 1 0 0
PRKCI WILD-TYPE 52 9 24 22
'SEC31A MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.275 (Fisher's exact test), Q value = 0.6

Table S6868.  Gene #629: 'SEC31A MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
SEC31A MUTATED 2 0 1 0
SEC31A WILD-TYPE 44 58 63 43
'SEC31A MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.183 (Fisher's exact test), Q value = 0.48

Table S6869.  Gene #629: 'SEC31A MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
SEC31A MUTATED 2 0 1
SEC31A WILD-TYPE 49 83 76
'SEC31A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0467 (Fisher's exact test), Q value = 0.23

Table S6870.  Gene #629: 'SEC31A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
SEC31A MUTATED 11 2 2 0
SEC31A WILD-TYPE 167 181 99 20

Figure S2023.  Get High-res Image Gene #629: 'SEC31A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'SEC31A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.203 (Fisher's exact test), Q value = 0.51

Table S6871.  Gene #629: 'SEC31A MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
SEC31A MUTATED 6 1 5
SEC31A WILD-TYPE 81 79 95
'SEC31A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.284 (Fisher's exact test), Q value = 0.61

Table S6872.  Gene #629: 'SEC31A MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
SEC31A MUTATED 2 3 7
SEC31A WILD-TYPE 87 157 131
'SEC31A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.8 (Fisher's exact test), Q value = 1

Table S6873.  Gene #629: 'SEC31A MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
SEC31A MUTATED 7 3 2
SEC31A WILD-TYPE 175 130 70
'SEC31A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0373 (Fisher's exact test), Q value = 0.2

Table S6874.  Gene #629: 'SEC31A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
SEC31A MUTATED 1 6 5 3
SEC31A WILD-TYPE 111 90 87 183

Figure S2024.  Get High-res Image Gene #629: 'SEC31A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'SEC31A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00209 (Fisher's exact test), Q value = 0.038

Table S6875.  Gene #629: 'SEC31A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
SEC31A MUTATED 0 2 7 1 2 1 2
SEC31A WILD-TYPE 60 48 42 39 61 124 97

Figure S2025.  Get High-res Image Gene #629: 'SEC31A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'SEC31A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.541 (Fisher's exact test), Q value = 0.86

Table S6876.  Gene #629: 'SEC31A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
SEC31A MUTATED 6 3 2 4
SEC31A WILD-TYPE 124 75 66 192
'SEC31A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0677 (Fisher's exact test), Q value = 0.28

Table S6877.  Gene #629: 'SEC31A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
SEC31A MUTATED 1 4 0 1 6 1 2 0 0
SEC31A WILD-TYPE 39 58 28 79 63 47 41 28 74
'SEC31A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0125 (Fisher's exact test), Q value = 0.11

Table S6878.  Gene #629: 'SEC31A MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
SEC31A MUTATED 0 1 1 4
SEC31A WILD-TYPE 33 30 26 15

Figure S2026.  Get High-res Image Gene #629: 'SEC31A MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'SEC31A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.083 (Fisher's exact test), Q value = 0.31

Table S6879.  Gene #629: 'SEC31A MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
SEC31A MUTATED 2 0 4 0
SEC31A WILD-TYPE 52 10 20 22
'KIAA0319L MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.134 (Fisher's exact test), Q value = 0.41

Table S6880.  Gene #630: 'KIAA0319L MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
KIAA0319L MUTATED 3 0 1 2
KIAA0319L WILD-TYPE 43 58 63 41
'KIAA0319L MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0718 (Fisher's exact test), Q value = 0.29

Table S6881.  Gene #630: 'KIAA0319L MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
KIAA0319L MUTATED 4 1 1
KIAA0319L WILD-TYPE 47 82 76
'KIAA0319L MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00031 (Fisher's exact test), Q value = 0.011

Table S6882.  Gene #630: 'KIAA0319L MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
KIAA0319L MUTATED 17 2 1 0
KIAA0319L WILD-TYPE 161 181 100 20

Figure S2027.  Get High-res Image Gene #630: 'KIAA0319L MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'KIAA0319L MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.103 (Fisher's exact test), Q value = 0.36

Table S6883.  Gene #630: 'KIAA0319L MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
KIAA0319L MUTATED 5 1 8
KIAA0319L WILD-TYPE 82 79 92
'KIAA0319L MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.255 (Fisher's exact test), Q value = 0.58

Table S6884.  Gene #630: 'KIAA0319L MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
KIAA0319L MUTATED 4 4 9
KIAA0319L WILD-TYPE 85 156 129
'KIAA0319L MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.278 (Fisher's exact test), Q value = 0.6

Table S6885.  Gene #630: 'KIAA0319L MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
KIAA0319L MUTATED 11 5 1
KIAA0319L WILD-TYPE 171 128 71
'KIAA0319L MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.189 (Fisher's exact test), Q value = 0.49

Table S6886.  Gene #630: 'KIAA0319L MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
KIAA0319L MUTATED 2 7 5 6
KIAA0319L WILD-TYPE 110 89 87 180
'KIAA0319L MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00235 (Fisher's exact test), Q value = 0.042

Table S6887.  Gene #630: 'KIAA0319L MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
KIAA0319L MUTATED 1 1 8 1 2 1 6
KIAA0319L WILD-TYPE 59 49 41 39 61 124 93

Figure S2028.  Get High-res Image Gene #630: 'KIAA0319L MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'KIAA0319L MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.188 (Fisher's exact test), Q value = 0.49

Table S6888.  Gene #630: 'KIAA0319L MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
KIAA0319L MUTATED 6 2 0 11
KIAA0319L WILD-TYPE 124 76 68 185
'KIAA0319L MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.015 (Fisher's exact test), Q value = 0.12

Table S6889.  Gene #630: 'KIAA0319L MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
KIAA0319L MUTATED 1 3 2 1 9 1 0 1 1
KIAA0319L WILD-TYPE 39 59 26 79 60 47 43 27 73

Figure S2029.  Get High-res Image Gene #630: 'KIAA0319L MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'KIAA0319L MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.025 (Fisher's exact test), Q value = 0.16

Table S6890.  Gene #630: 'KIAA0319L MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
KIAA0319L MUTATED 1 0 0 3
KIAA0319L WILD-TYPE 32 31 27 16

Figure S2030.  Get High-res Image Gene #630: 'KIAA0319L MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'KIAA0319L MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.671 (Fisher's exact test), Q value = 0.95

Table S6891.  Gene #630: 'KIAA0319L MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
KIAA0319L MUTATED 2 0 2 0
KIAA0319L WILD-TYPE 52 10 22 22
'BACE2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0645 (Fisher's exact test), Q value = 0.28

Table S6892.  Gene #631: 'BACE2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
BACE2 MUTATED 1 0 0 2
BACE2 WILD-TYPE 45 58 64 41
'BACE2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.252 (Fisher's exact test), Q value = 0.58

Table S6893.  Gene #631: 'BACE2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
BACE2 MUTATED 2 1 0
BACE2 WILD-TYPE 49 82 77
'BACE2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0692 (Fisher's exact test), Q value = 0.28

Table S6894.  Gene #631: 'BACE2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
BACE2 MUTATED 8 1 2 0
BACE2 WILD-TYPE 170 182 99 20
'BACE2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S6895.  Gene #631: 'BACE2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
BACE2 MUTATED 3 2 3
BACE2 WILD-TYPE 84 78 97
'BACE2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.903 (Fisher's exact test), Q value = 1

Table S6896.  Gene #631: 'BACE2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
BACE2 MUTATED 1 4 3
BACE2 WILD-TYPE 88 156 135
'BACE2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.808 (Fisher's exact test), Q value = 1

Table S6897.  Gene #631: 'BACE2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
BACE2 MUTATED 4 2 2
BACE2 WILD-TYPE 178 131 70
'BACE2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.327 (Fisher's exact test), Q value = 0.66

Table S6898.  Gene #631: 'BACE2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
BACE2 MUTATED 1 3 4 3
BACE2 WILD-TYPE 111 93 88 183
'BACE2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0252 (Fisher's exact test), Q value = 0.16

Table S6899.  Gene #631: 'BACE2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
BACE2 MUTATED 0 1 4 1 2 0 3
BACE2 WILD-TYPE 60 49 45 39 61 125 96

Figure S2031.  Get High-res Image Gene #631: 'BACE2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'BACE2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.153 (Fisher's exact test), Q value = 0.44

Table S6900.  Gene #631: 'BACE2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
BACE2 MUTATED 4 4 0 3
BACE2 WILD-TYPE 126 74 68 193
'BACE2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.328 (Fisher's exact test), Q value = 0.66

Table S6901.  Gene #631: 'BACE2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
BACE2 MUTATED 1 2 1 1 4 0 1 1 0
BACE2 WILD-TYPE 39 60 27 79 65 48 42 27 74
'BACE2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.359 (Fisher's exact test), Q value = 0.69

Table S6902.  Gene #631: 'BACE2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
BACE2 MUTATED 1 1 0 2
BACE2 WILD-TYPE 32 30 27 17
'BACE2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.674 (Fisher's exact test), Q value = 0.96

Table S6903.  Gene #631: 'BACE2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
BACE2 MUTATED 2 0 2 0
BACE2 WILD-TYPE 52 10 22 22
'VAV2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0478 (Fisher's exact test), Q value = 0.23

Table S6904.  Gene #632: 'VAV2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
VAV2 MUTATED 13 3 3 0
VAV2 WILD-TYPE 165 180 98 20

Figure S2032.  Get High-res Image Gene #632: 'VAV2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'VAV2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.618 (Fisher's exact test), Q value = 0.92

Table S6905.  Gene #632: 'VAV2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
VAV2 MUTATED 4 4 8
VAV2 WILD-TYPE 83 76 92
'VAV2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.248 (Fisher's exact test), Q value = 0.57

Table S6906.  Gene #632: 'VAV2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
VAV2 MUTATED 2 5 9
VAV2 WILD-TYPE 87 155 129
'VAV2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0749 (Fisher's exact test), Q value = 0.29

Table S6907.  Gene #632: 'VAV2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
VAV2 MUTATED 11 5 0
VAV2 WILD-TYPE 171 128 72
'VAV2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0285 (Fisher's exact test), Q value = 0.17

Table S6908.  Gene #632: 'VAV2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
VAV2 MUTATED 5 7 5 2
VAV2 WILD-TYPE 107 89 87 184

Figure S2033.  Get High-res Image Gene #632: 'VAV2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'VAV2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00168 (Fisher's exact test), Q value = 0.034

Table S6909.  Gene #632: 'VAV2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
VAV2 MUTATED 5 3 6 2 0 1 2
VAV2 WILD-TYPE 55 47 43 38 63 124 97

Figure S2034.  Get High-res Image Gene #632: 'VAV2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'VAV2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00241 (Fisher's exact test), Q value = 0.042

Table S6910.  Gene #632: 'VAV2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
VAV2 MUTATED 13 1 1 4
VAV2 WILD-TYPE 117 77 67 192

Figure S2035.  Get High-res Image Gene #632: 'VAV2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'VAV2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.104 (Fisher's exact test), Q value = 0.36

Table S6911.  Gene #632: 'VAV2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
VAV2 MUTATED 3 3 0 3 5 1 4 0 0
VAV2 WILD-TYPE 37 59 28 77 64 47 39 28 74
'VAV2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0239 (Fisher's exact test), Q value = 0.16

Table S6912.  Gene #632: 'VAV2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
VAV2 MUTATED 2 0 0 3
VAV2 WILD-TYPE 31 31 27 16

Figure S2036.  Get High-res Image Gene #632: 'VAV2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'VAV2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.632 (Fisher's exact test), Q value = 0.93

Table S6913.  Gene #632: 'VAV2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
VAV2 MUTATED 4 0 0 1
VAV2 WILD-TYPE 50 10 24 21
'GAB1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00897 (Fisher's exact test), Q value = 0.088

Table S6914.  Gene #633: 'GAB1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
GAB1 MUTATED 3 0 0 3
GAB1 WILD-TYPE 43 58 64 40

Figure S2037.  Get High-res Image Gene #633: 'GAB1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'GAB1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0224 (Fisher's exact test), Q value = 0.15

Table S6915.  Gene #633: 'GAB1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
GAB1 MUTATED 4 2 0
GAB1 WILD-TYPE 47 81 77

Figure S2038.  Get High-res Image Gene #633: 'GAB1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'GAB1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.178 (Fisher's exact test), Q value = 0.48

Table S6916.  Gene #633: 'GAB1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
GAB1 MUTATED 10 3 2 0
GAB1 WILD-TYPE 168 180 99 20
'GAB1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.584 (Fisher's exact test), Q value = 0.89

Table S6917.  Gene #633: 'GAB1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
GAB1 MUTATED 2 2 5
GAB1 WILD-TYPE 85 78 95
'GAB1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S6918.  Gene #633: 'GAB1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
GAB1 MUTATED 3 6 5
GAB1 WILD-TYPE 86 154 133
'GAB1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.486 (Fisher's exact test), Q value = 0.81

Table S6919.  Gene #633: 'GAB1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
GAB1 MUTATED 5 7 2
GAB1 WILD-TYPE 177 126 70
'GAB1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.247 (Fisher's exact test), Q value = 0.57

Table S6920.  Gene #633: 'GAB1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
GAB1 MUTATED 1 5 4 5
GAB1 WILD-TYPE 111 91 88 181
'GAB1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.188 (Fisher's exact test), Q value = 0.49

Table S6921.  Gene #633: 'GAB1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
GAB1 MUTATED 1 1 4 1 2 1 5
GAB1 WILD-TYPE 59 49 45 39 61 124 94
'GAB1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.959 (Fisher's exact test), Q value = 1

Table S6922.  Gene #633: 'GAB1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
GAB1 MUTATED 4 2 1 7
GAB1 WILD-TYPE 126 76 67 189
'GAB1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0337 (Fisher's exact test), Q value = 0.19

Table S6923.  Gene #633: 'GAB1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
GAB1 MUTATED 3 2 1 1 6 0 1 0 0
GAB1 WILD-TYPE 37 60 27 79 63 48 42 28 74

Figure S2039.  Get High-res Image Gene #633: 'GAB1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'GAB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.147 (Fisher's exact test), Q value = 0.43

Table S6924.  Gene #633: 'GAB1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
GAB1 MUTATED 3 0 0 1
GAB1 WILD-TYPE 30 31 27 18
'GAB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.868 (Fisher's exact test), Q value = 1

Table S6925.  Gene #633: 'GAB1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
GAB1 MUTATED 3 0 1 0
GAB1 WILD-TYPE 51 10 23 22
'RPA3 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S6926.  Gene #634: 'RPA3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
RPA3 MUTATED 1 2 1 0
RPA3 WILD-TYPE 177 181 100 20
'RPA3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.689 (Fisher's exact test), Q value = 0.97

Table S6927.  Gene #634: 'RPA3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
RPA3 MUTATED 1 2 1
RPA3 WILD-TYPE 86 78 99
'RPA3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.284 (Fisher's exact test), Q value = 0.61

Table S6928.  Gene #634: 'RPA3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
RPA3 MUTATED 1 3 0
RPA3 WILD-TYPE 88 157 138
'RPA3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0218 (Fisher's exact test), Q value = 0.15

Table S6929.  Gene #634: 'RPA3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
RPA3 MUTATED 1 0 3
RPA3 WILD-TYPE 181 133 69

Figure S2040.  Get High-res Image Gene #634: 'RPA3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'RPA3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.207 (Fisher's exact test), Q value = 0.51

Table S6930.  Gene #634: 'RPA3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
RPA3 MUTATED 2 1 1 0
RPA3 WILD-TYPE 110 95 91 186
'RPA3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.128 (Fisher's exact test), Q value = 0.4

Table S6931.  Gene #634: 'RPA3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
RPA3 MUTATED 0 1 1 1 1 0 0
RPA3 WILD-TYPE 60 49 48 39 62 125 99
'RPA3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0438 (Fisher's exact test), Q value = 0.22

Table S6932.  Gene #634: 'RPA3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
RPA3 MUTATED 2 0 2 0
RPA3 WILD-TYPE 128 78 66 196

Figure S2041.  Get High-res Image Gene #634: 'RPA3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'RPA3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.353 (Fisher's exact test), Q value = 0.68

Table S6933.  Gene #634: 'RPA3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
RPA3 MUTATED 0 0 0 1 1 0 2 0 0
RPA3 WILD-TYPE 40 62 28 79 68 48 41 28 74
'RPA3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.255 (Fisher's exact test), Q value = 0.58

Table S6934.  Gene #634: 'RPA3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
RPA3 MUTATED 2 0 0 1
RPA3 WILD-TYPE 31 31 27 18
'RPA3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.112 (Fisher's exact test), Q value = 0.37

Table S6935.  Gene #634: 'RPA3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
RPA3 MUTATED 0 0 1 2
RPA3 WILD-TYPE 54 10 23 20
'GPR61 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.28 (Fisher's exact test), Q value = 0.61

Table S6936.  Gene #635: 'GPR61 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
GPR61 MUTATED 2 0 2 0
GPR61 WILD-TYPE 44 58 62 43
'GPR61 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S6937.  Gene #635: 'GPR61 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
GPR61 MUTATED 1 2 1
GPR61 WILD-TYPE 50 81 76
'GPR61 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.739 (Fisher's exact test), Q value = 1

Table S6938.  Gene #635: 'GPR61 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
GPR61 MUTATED 6 3 2 0
GPR61 WILD-TYPE 172 180 99 20
'GPR61 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.497 (Fisher's exact test), Q value = 0.82

Table S6939.  Gene #635: 'GPR61 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
GPR61 MUTATED 4 1 3
GPR61 WILD-TYPE 83 79 97
'GPR61 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0859 (Fisher's exact test), Q value = 0.32

Table S6940.  Gene #635: 'GPR61 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
GPR61 MUTATED 2 1 6
GPR61 WILD-TYPE 87 159 132
'GPR61 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.74 (Fisher's exact test), Q value = 1

Table S6941.  Gene #635: 'GPR61 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
GPR61 MUTATED 5 2 2
GPR61 WILD-TYPE 177 131 70
'GPR61 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.427 (Fisher's exact test), Q value = 0.75

Table S6942.  Gene #635: 'GPR61 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
GPR61 MUTATED 1 3 4 4
GPR61 WILD-TYPE 111 93 88 182
'GPR61 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.18 (Fisher's exact test), Q value = 0.48

Table S6943.  Gene #635: 'GPR61 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
GPR61 MUTATED 2 3 3 0 0 2 2
GPR61 WILD-TYPE 58 47 46 40 63 123 97
'GPR61 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.396 (Fisher's exact test), Q value = 0.72

Table S6944.  Gene #635: 'GPR61 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
GPR61 MUTATED 4 0 1 7
GPR61 WILD-TYPE 126 78 67 189
'GPR61 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.654 (Fisher's exact test), Q value = 0.94

Table S6945.  Gene #635: 'GPR61 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
GPR61 MUTATED 1 1 1 1 4 0 1 0 3
GPR61 WILD-TYPE 39 61 27 79 65 48 42 28 71
'GPR61 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.347 (Fisher's exact test), Q value = 0.68

Table S6946.  Gene #635: 'GPR61 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
GPR61 MUTATED 2 0 2 2
GPR61 WILD-TYPE 31 31 25 17
'GPR61 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.281 (Fisher's exact test), Q value = 0.61

Table S6947.  Gene #635: 'GPR61 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
GPR61 MUTATED 3 0 3 0
GPR61 WILD-TYPE 51 10 21 22
'OAS1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0183 (Fisher's exact test), Q value = 0.14

Table S6948.  Gene #636: 'OAS1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
OAS1 MUTATED 3 0 0 0
OAS1 WILD-TYPE 43 58 64 43

Figure S2042.  Get High-res Image Gene #636: 'OAS1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'OAS1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.253 (Fisher's exact test), Q value = 0.58

Table S6949.  Gene #636: 'OAS1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
OAS1 MUTATED 2 1 0
OAS1 WILD-TYPE 49 82 77
'OAS1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.255 (Fisher's exact test), Q value = 0.58

Table S6950.  Gene #636: 'OAS1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
OAS1 MUTATED 5 1 3 0
OAS1 WILD-TYPE 173 182 98 20
'OAS1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.449 (Fisher's exact test), Q value = 0.78

Table S6951.  Gene #636: 'OAS1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
OAS1 MUTATED 2 3 1
OAS1 WILD-TYPE 85 77 99
'OAS1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0783 (Fisher's exact test), Q value = 0.3

Table S6952.  Gene #636: 'OAS1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
OAS1 MUTATED 0 1 5
OAS1 WILD-TYPE 89 159 133
'OAS1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.665 (Fisher's exact test), Q value = 0.95

Table S6953.  Gene #636: 'OAS1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
OAS1 MUTATED 4 2 0
OAS1 WILD-TYPE 178 131 72
'OAS1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.57 (Fisher's exact test), Q value = 0.88

Table S6954.  Gene #636: 'OAS1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
OAS1 MUTATED 4 1 1 3
OAS1 WILD-TYPE 108 95 91 183
'OAS1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.327 (Fisher's exact test), Q value = 0.66

Table S6955.  Gene #636: 'OAS1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
OAS1 MUTATED 3 2 0 0 1 1 2
OAS1 WILD-TYPE 57 48 49 40 62 124 97
'OAS1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S6956.  Gene #636: 'OAS1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
OAS1 MUTATED 3 1 1 4
OAS1 WILD-TYPE 127 77 67 192
'OAS1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.861 (Fisher's exact test), Q value = 1

Table S6957.  Gene #636: 'OAS1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
OAS1 MUTATED 0 1 1 3 2 0 1 0 1
OAS1 WILD-TYPE 40 61 27 77 67 48 42 28 73
'OAS1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S6958.  Gene #636: 'OAS1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
OAS1 MUTATED 1 1 1 0
OAS1 WILD-TYPE 32 30 26 19
'OAS1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S6959.  Gene #636: 'OAS1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
OAS1 MUTATED 2 0 1 0
OAS1 WILD-TYPE 52 10 23 22
'OLR1 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S6960.  Gene #637: 'OLR1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
OLR1 MUTATED 4 4 2 0
OLR1 WILD-TYPE 174 179 99 20
'OLR1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.819 (Fisher's exact test), Q value = 1

Table S6961.  Gene #637: 'OLR1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
OLR1 MUTATED 2 2 4
OLR1 WILD-TYPE 85 78 96
'OLR1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.831 (Fisher's exact test), Q value = 1

Table S6962.  Gene #637: 'OLR1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
OLR1 MUTATED 1 4 4
OLR1 WILD-TYPE 88 156 134
'OLR1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.365 (Fisher's exact test), Q value = 0.69

Table S6963.  Gene #637: 'OLR1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
OLR1 MUTATED 6 3 0
OLR1 WILD-TYPE 176 130 72
'OLR1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.824 (Fisher's exact test), Q value = 1

Table S6964.  Gene #637: 'OLR1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
OLR1 MUTATED 2 3 2 3
OLR1 WILD-TYPE 110 93 90 183
'OLR1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.369 (Fisher's exact test), Q value = 0.7

Table S6965.  Gene #637: 'OLR1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
OLR1 MUTATED 2 2 2 1 0 1 2
OLR1 WILD-TYPE 58 48 47 39 63 124 97
'OLR1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.761 (Fisher's exact test), Q value = 1

Table S6966.  Gene #637: 'OLR1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
OLR1 MUTATED 4 2 1 3
OLR1 WILD-TYPE 126 76 67 193
'OLR1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.473 (Fisher's exact test), Q value = 0.8

Table S6967.  Gene #637: 'OLR1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
OLR1 MUTATED 1 3 1 3 1 0 1 0 0
OLR1 WILD-TYPE 39 59 27 77 68 48 42 28 74
'OLR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.36 (Fisher's exact test), Q value = 0.69

Table S6968.  Gene #637: 'OLR1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
OLR1 MUTATED 1 1 0 2
OLR1 WILD-TYPE 32 30 27 17
'OLR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S6969.  Gene #637: 'OLR1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
OLR1 MUTATED 2 0 1 1
OLR1 WILD-TYPE 52 10 23 21
'ELFN2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.422 (Fisher's exact test), Q value = 0.75

Table S6970.  Gene #638: 'ELFN2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ELFN2 MUTATED 4 5 0 0
ELFN2 WILD-TYPE 174 178 101 20
'ELFN2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.446 (Fisher's exact test), Q value = 0.77

Table S6971.  Gene #638: 'ELFN2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ELFN2 MUTATED 1 3 4
ELFN2 WILD-TYPE 86 77 96
'ELFN2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.509 (Fisher's exact test), Q value = 0.83

Table S6972.  Gene #638: 'ELFN2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ELFN2 MUTATED 0 3 3
ELFN2 WILD-TYPE 89 157 135
'ELFN2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.58 (Fisher's exact test), Q value = 0.89

Table S6973.  Gene #638: 'ELFN2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ELFN2 MUTATED 3 3 0
ELFN2 WILD-TYPE 179 130 72
'ELFN2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.227 (Fisher's exact test), Q value = 0.55

Table S6974.  Gene #638: 'ELFN2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ELFN2 MUTATED 3 2 3 1
ELFN2 WILD-TYPE 109 94 89 185
'ELFN2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0354 (Fisher's exact test), Q value = 0.19

Table S6975.  Gene #638: 'ELFN2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ELFN2 MUTATED 2 2 2 2 0 0 1
ELFN2 WILD-TYPE 58 48 47 38 63 125 98

Figure S2043.  Get High-res Image Gene #638: 'ELFN2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ELFN2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0834 (Fisher's exact test), Q value = 0.31

Table S6976.  Gene #638: 'ELFN2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ELFN2 MUTATED 6 1 0 2
ELFN2 WILD-TYPE 124 77 68 194
'ELFN2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.014 (Fisher's exact test), Q value = 0.12

Table S6977.  Gene #638: 'ELFN2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ELFN2 MUTATED 4 2 0 0 0 2 0 0 1
ELFN2 WILD-TYPE 36 60 28 80 69 46 43 28 73

Figure S2044.  Get High-res Image Gene #638: 'ELFN2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'ANAPC4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.718 (Fisher's exact test), Q value = 0.99

Table S6978.  Gene #639: 'ANAPC4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ANAPC4 MUTATED 6 5 1 0
ANAPC4 WILD-TYPE 172 178 100 20
'ANAPC4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S6979.  Gene #639: 'ANAPC4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ANAPC4 MUTATED 3 3 4
ANAPC4 WILD-TYPE 84 77 96
'ANAPC4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S6980.  Gene #639: 'ANAPC4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ANAPC4 MUTATED 2 5 4
ANAPC4 WILD-TYPE 87 155 134
'ANAPC4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.612 (Fisher's exact test), Q value = 0.91

Table S6981.  Gene #639: 'ANAPC4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ANAPC4 MUTATED 4 4 3
ANAPC4 WILD-TYPE 178 129 69
'ANAPC4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.4 (Fisher's exact test), Q value = 0.73

Table S6982.  Gene #639: 'ANAPC4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ANAPC4 MUTATED 4 3 3 2
ANAPC4 WILD-TYPE 108 93 89 184
'ANAPC4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0318 (Fisher's exact test), Q value = 0.18

Table S6983.  Gene #639: 'ANAPC4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ANAPC4 MUTATED 2 2 1 3 3 0 1
ANAPC4 WILD-TYPE 58 48 48 37 60 125 98

Figure S2045.  Get High-res Image Gene #639: 'ANAPC4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ANAPC4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0764 (Fisher's exact test), Q value = 0.3

Table S6984.  Gene #639: 'ANAPC4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ANAPC4 MUTATED 5 3 2 1
ANAPC4 WILD-TYPE 125 75 66 195
'ANAPC4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0489 (Fisher's exact test), Q value = 0.24

Table S6985.  Gene #639: 'ANAPC4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ANAPC4 MUTATED 3 3 0 0 1 2 2 0 0
ANAPC4 WILD-TYPE 37 59 28 80 68 46 41 28 74

Figure S2046.  Get High-res Image Gene #639: 'ANAPC4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'ANAPC4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.699 (Fisher's exact test), Q value = 0.97

Table S6986.  Gene #639: 'ANAPC4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
ANAPC4 MUTATED 2 1 0 1
ANAPC4 WILD-TYPE 31 30 27 18
'ANAPC4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.374 (Fisher's exact test), Q value = 0.7

Table S6987.  Gene #639: 'ANAPC4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
ANAPC4 MUTATED 2 1 0 1
ANAPC4 WILD-TYPE 52 9 24 21
'ITGB8 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0066 (Fisher's exact test), Q value = 0.074

Table S6988.  Gene #640: 'ITGB8 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ITGB8 MUTATED 4 0 0 2
ITGB8 WILD-TYPE 42 58 64 41

Figure S2047.  Get High-res Image Gene #640: 'ITGB8 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'ITGB8 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0711 (Fisher's exact test), Q value = 0.29

Table S6989.  Gene #640: 'ITGB8 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ITGB8 MUTATED 4 1 1
ITGB8 WILD-TYPE 47 82 76
'ITGB8 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00326 (Fisher's exact test), Q value = 0.051

Table S6990.  Gene #640: 'ITGB8 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ITGB8 MUTATED 10 1 0 1
ITGB8 WILD-TYPE 168 182 101 19

Figure S2048.  Get High-res Image Gene #640: 'ITGB8 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ITGB8 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.681 (Fisher's exact test), Q value = 0.96

Table S6991.  Gene #640: 'ITGB8 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ITGB8 MUTATED 3 1 2
ITGB8 WILD-TYPE 84 79 98
'ITGB8 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.192 (Fisher's exact test), Q value = 0.49

Table S6992.  Gene #640: 'ITGB8 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ITGB8 MUTATED 1 2 6
ITGB8 WILD-TYPE 88 158 132
'ITGB8 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.91 (Fisher's exact test), Q value = 1

Table S6993.  Gene #640: 'ITGB8 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ITGB8 MUTATED 4 3 2
ITGB8 WILD-TYPE 178 130 70
'ITGB8 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.382 (Fisher's exact test), Q value = 0.71

Table S6994.  Gene #640: 'ITGB8 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ITGB8 MUTATED 1 4 1 6
ITGB8 WILD-TYPE 111 92 91 180
'ITGB8 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.49 (Fisher's exact test), Q value = 0.82

Table S6995.  Gene #640: 'ITGB8 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ITGB8 MUTATED 1 1 2 2 1 1 4
ITGB8 WILD-TYPE 59 49 47 38 62 124 95
'ITGB8 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.25 (Fisher's exact test), Q value = 0.58

Table S6996.  Gene #640: 'ITGB8 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ITGB8 MUTATED 2 1 0 8
ITGB8 WILD-TYPE 128 77 68 188
'ITGB8 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.142 (Fisher's exact test), Q value = 0.42

Table S6997.  Gene #640: 'ITGB8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ITGB8 MUTATED 1 1 0 2 6 0 0 0 1
ITGB8 WILD-TYPE 39 61 28 78 63 48 43 28 73
'ITGB8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.782 (Fisher's exact test), Q value = 1

Table S6998.  Gene #640: 'ITGB8 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
ITGB8 MUTATED 1 0 1 1
ITGB8 WILD-TYPE 32 31 26 18
'ITGB8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.695 (Fisher's exact test), Q value = 0.97

Table S6999.  Gene #640: 'ITGB8 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
ITGB8 MUTATED 1 0 1 1
ITGB8 WILD-TYPE 53 10 23 21
'PAXIP1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.032 (Fisher's exact test), Q value = 0.18

Table S7000.  Gene #641: 'PAXIP1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
PAXIP1 MUTATED 3 0 0 1
PAXIP1 WILD-TYPE 43 58 64 42

Figure S2049.  Get High-res Image Gene #641: 'PAXIP1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'PAXIP1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00293 (Fisher's exact test), Q value = 0.048

Table S7001.  Gene #641: 'PAXIP1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
PAXIP1 MUTATED 4 0 0
PAXIP1 WILD-TYPE 47 83 77

Figure S2050.  Get High-res Image Gene #641: 'PAXIP1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'PAXIP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0131 (Fisher's exact test), Q value = 0.11

Table S7002.  Gene #641: 'PAXIP1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
PAXIP1 MUTATED 11 5 1 3
PAXIP1 WILD-TYPE 167 178 100 17

Figure S2051.  Get High-res Image Gene #641: 'PAXIP1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'PAXIP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.684 (Fisher's exact test), Q value = 0.96

Table S7003.  Gene #641: 'PAXIP1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
PAXIP1 MUTATED 7 4 5
PAXIP1 WILD-TYPE 80 76 95
'PAXIP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.111 (Fisher's exact test), Q value = 0.37

Table S7004.  Gene #641: 'PAXIP1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
PAXIP1 MUTATED 1 5 9
PAXIP1 WILD-TYPE 88 155 129
'PAXIP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.732 (Fisher's exact test), Q value = 1

Table S7005.  Gene #641: 'PAXIP1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
PAXIP1 MUTATED 9 4 2
PAXIP1 WILD-TYPE 173 129 70
'PAXIP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.097 (Fisher's exact test), Q value = 0.34

Table S7006.  Gene #641: 'PAXIP1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
PAXIP1 MUTATED 3 6 7 4
PAXIP1 WILD-TYPE 109 90 85 182
'PAXIP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 8e-04 (Fisher's exact test), Q value = 0.021

Table S7007.  Gene #641: 'PAXIP1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
PAXIP1 MUTATED 2 5 6 0 2 0 5
PAXIP1 WILD-TYPE 58 45 43 40 61 125 94

Figure S2052.  Get High-res Image Gene #641: 'PAXIP1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'PAXIP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.114 (Fisher's exact test), Q value = 0.37

Table S7008.  Gene #641: 'PAXIP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
PAXIP1 MUTATED 3 7 3 6
PAXIP1 WILD-TYPE 127 71 65 190
'PAXIP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.143 (Fisher's exact test), Q value = 0.42

Table S7009.  Gene #641: 'PAXIP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
PAXIP1 MUTATED 1 6 1 2 5 1 2 1 0
PAXIP1 WILD-TYPE 39 56 27 78 64 47 41 27 74
'PAXIP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.189 (Fisher's exact test), Q value = 0.49

Table S7010.  Gene #641: 'PAXIP1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
PAXIP1 MUTATED 5 1 1 3
PAXIP1 WILD-TYPE 28 30 26 16
'PAXIP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.574 (Fisher's exact test), Q value = 0.88

Table S7011.  Gene #641: 'PAXIP1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
PAXIP1 MUTATED 7 1 1 1
PAXIP1 WILD-TYPE 47 9 23 21
'HIST1H1C MUTATION STATUS' versus 'CN_CNMF'

P value = 0.121 (Fisher's exact test), Q value = 0.39

Table S7012.  Gene #642: 'HIST1H1C MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
HIST1H1C MUTATED 4 0 0 0
HIST1H1C WILD-TYPE 174 183 101 20
'HIST1H1C MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.777 (Fisher's exact test), Q value = 1

Table S7013.  Gene #642: 'HIST1H1C MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
HIST1H1C MUTATED 1 0 2
HIST1H1C WILD-TYPE 86 80 98
'HIST1H1C MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.249 (Fisher's exact test), Q value = 0.58

Table S7014.  Gene #642: 'HIST1H1C MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
HIST1H1C MUTATED 0 3 0
HIST1H1C WILD-TYPE 89 157 138
'HIST1H1C MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0821 (Fisher's exact test), Q value = 0.31

Table S7015.  Gene #642: 'HIST1H1C MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
HIST1H1C MUTATED 0 3 0
HIST1H1C WILD-TYPE 182 130 72
'HIST1H1C MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.761 (Fisher's exact test), Q value = 1

Table S7016.  Gene #642: 'HIST1H1C MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
HIST1H1C MUTATED 0 1 1 2
HIST1H1C WILD-TYPE 112 95 91 184
'HIST1H1C MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.297 (Fisher's exact test), Q value = 0.63

Table S7017.  Gene #642: 'HIST1H1C MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
HIST1H1C MUTATED 0 1 1 0 0 0 2
HIST1H1C WILD-TYPE 60 49 48 40 63 125 97
'HIST1H1C MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.479 (Fisher's exact test), Q value = 0.81

Table S7018.  Gene #642: 'HIST1H1C MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
HIST1H1C MUTATED 0 1 1 2
HIST1H1C WILD-TYPE 130 77 67 194
'HIST1H1C MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.495 (Fisher's exact test), Q value = 0.82

Table S7019.  Gene #642: 'HIST1H1C MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
HIST1H1C MUTATED 0 1 1 0 0 1 0 0 1
HIST1H1C WILD-TYPE 40 61 27 80 69 47 43 28 73
'IL18R1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0777 (Fisher's exact test), Q value = 0.3

Table S7020.  Gene #643: 'IL18R1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
IL18R1 MUTATED 4 0 2 3
IL18R1 WILD-TYPE 42 58 62 40
'IL18R1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.376 (Fisher's exact test), Q value = 0.71

Table S7021.  Gene #643: 'IL18R1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
IL18R1 MUTATED 4 3 2
IL18R1 WILD-TYPE 47 80 75
'IL18R1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0595 (Fisher's exact test), Q value = 0.27

Table S7022.  Gene #643: 'IL18R1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
IL18R1 MUTATED 10 2 2 1
IL18R1 WILD-TYPE 168 181 99 19
'IL18R1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.29 (Fisher's exact test), Q value = 0.62

Table S7023.  Gene #643: 'IL18R1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
IL18R1 MUTATED 3 0 3
IL18R1 WILD-TYPE 84 80 97
'IL18R1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.651 (Fisher's exact test), Q value = 0.94

Table S7024.  Gene #643: 'IL18R1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
IL18R1 MUTATED 2 4 6
IL18R1 WILD-TYPE 87 156 132
'IL18R1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.285 (Fisher's exact test), Q value = 0.61

Table S7025.  Gene #643: 'IL18R1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
IL18R1 MUTATED 3 6 3
IL18R1 WILD-TYPE 179 127 69
'IL18R1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.204 (Fisher's exact test), Q value = 0.51

Table S7026.  Gene #643: 'IL18R1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
IL18R1 MUTATED 1 3 2 10
IL18R1 WILD-TYPE 111 93 90 176
'IL18R1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.138 (Fisher's exact test), Q value = 0.41

Table S7027.  Gene #643: 'IL18R1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
IL18R1 MUTATED 1 2 2 0 1 2 8
IL18R1 WILD-TYPE 59 48 47 40 62 123 91
'IL18R1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0497 (Fisher's exact test), Q value = 0.24

Table S7028.  Gene #643: 'IL18R1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
IL18R1 MUTATED 1 2 1 12
IL18R1 WILD-TYPE 129 76 67 184

Figure S2053.  Get High-res Image Gene #643: 'IL18R1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'IL18R1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.319 (Fisher's exact test), Q value = 0.65

Table S7029.  Gene #643: 'IL18R1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
IL18R1 MUTATED 1 1 2 1 4 0 1 2 4
IL18R1 WILD-TYPE 39 61 26 79 65 48 42 26 70
'IBTK MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00164 (Fisher's exact test), Q value = 0.034

Table S7030.  Gene #644: 'IBTK MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
IBTK MUTATED 5 0 0 3
IBTK WILD-TYPE 41 58 64 40

Figure S2054.  Get High-res Image Gene #644: 'IBTK MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'IBTK MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0477 (Fisher's exact test), Q value = 0.23

Table S7031.  Gene #644: 'IBTK MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
IBTK MUTATED 5 1 2
IBTK WILD-TYPE 46 82 75

Figure S2055.  Get High-res Image Gene #644: 'IBTK MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'IBTK MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0139 (Fisher's exact test), Q value = 0.12

Table S7032.  Gene #644: 'IBTK MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
IBTK MUTATED 15 5 1 1
IBTK WILD-TYPE 163 178 100 19

Figure S2056.  Get High-res Image Gene #644: 'IBTK MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'IBTK MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.563 (Fisher's exact test), Q value = 0.87

Table S7033.  Gene #644: 'IBTK MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
IBTK MUTATED 3 5 7
IBTK WILD-TYPE 84 75 93
'IBTK MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.481 (Fisher's exact test), Q value = 0.81

Table S7034.  Gene #644: 'IBTK MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
IBTK MUTATED 3 6 9
IBTK WILD-TYPE 86 154 129
'IBTK MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.329 (Fisher's exact test), Q value = 0.66

Table S7035.  Gene #644: 'IBTK MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
IBTK MUTATED 9 8 1
IBTK WILD-TYPE 173 125 71
'IBTK MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.659 (Fisher's exact test), Q value = 0.95

Table S7036.  Gene #644: 'IBTK MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
IBTK MUTATED 4 7 4 8
IBTK WILD-TYPE 108 89 88 178
'IBTK MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00823 (Fisher's exact test), Q value = 0.084

Table S7037.  Gene #644: 'IBTK MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
IBTK MUTATED 2 2 5 2 5 0 7
IBTK WILD-TYPE 58 48 44 38 58 125 92

Figure S2057.  Get High-res Image Gene #644: 'IBTK MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'IBTK MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.914 (Fisher's exact test), Q value = 1

Table S7038.  Gene #644: 'IBTK MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
IBTK MUTATED 6 5 3 9
IBTK WILD-TYPE 124 73 65 187
'IBTK MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0325 (Fisher's exact test), Q value = 0.18

Table S7039.  Gene #644: 'IBTK MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
IBTK MUTATED 1 5 2 1 9 1 2 1 1
IBTK WILD-TYPE 39 57 26 79 60 47 41 27 73

Figure S2058.  Get High-res Image Gene #644: 'IBTK MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'IBTK MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.592 (Fisher's exact test), Q value = 0.9

Table S7040.  Gene #644: 'IBTK MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
IBTK MUTATED 1 3 3 2
IBTK WILD-TYPE 32 28 24 17
'IBTK MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.499 (Fisher's exact test), Q value = 0.83

Table S7041.  Gene #644: 'IBTK MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
IBTK MUTATED 4 2 2 1
IBTK WILD-TYPE 50 8 22 21
'RTP3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.877 (Fisher's exact test), Q value = 1

Table S7042.  Gene #645: 'RTP3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
RTP3 MUTATED 1 3 1 0
RTP3 WILD-TYPE 177 180 100 20
'RTP3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.449 (Fisher's exact test), Q value = 0.78

Table S7043.  Gene #645: 'RTP3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
RTP3 MUTATED 1 3 1
RTP3 WILD-TYPE 86 77 99
'RTP3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0844 (Fisher's exact test), Q value = 0.31

Table S7044.  Gene #645: 'RTP3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
RTP3 MUTATED 0 4 0
RTP3 WILD-TYPE 89 156 138
'RTP3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.035 (Fisher's exact test), Q value = 0.19

Table S7045.  Gene #645: 'RTP3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
RTP3 MUTATED 0 4 0
RTP3 WILD-TYPE 182 129 72

Figure S2059.  Get High-res Image Gene #645: 'RTP3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'RTP3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0741 (Fisher's exact test), Q value = 0.29

Table S7046.  Gene #645: 'RTP3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
RTP3 MUTATED 3 1 1 0
RTP3 WILD-TYPE 109 95 91 186
'RTP3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0274 (Fisher's exact test), Q value = 0.17

Table S7047.  Gene #645: 'RTP3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
RTP3 MUTATED 3 0 1 0 1 0 0
RTP3 WILD-TYPE 57 50 48 40 62 125 99

Figure S2060.  Get High-res Image Gene #645: 'RTP3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'RTP3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.105 (Fisher's exact test), Q value = 0.36

Table S7048.  Gene #645: 'RTP3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
RTP3 MUTATED 3 1 1 0
RTP3 WILD-TYPE 127 77 67 196
'RTP3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.875 (Fisher's exact test), Q value = 1

Table S7049.  Gene #645: 'RTP3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
RTP3 MUTATED 1 1 0 1 1 0 1 0 0
RTP3 WILD-TYPE 39 61 28 79 68 48 42 28 74
'TAOK3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0261 (Fisher's exact test), Q value = 0.16

Table S7050.  Gene #646: 'TAOK3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
TAOK3 MUTATED 3 0 0 2
TAOK3 WILD-TYPE 43 58 64 41

Figure S2061.  Get High-res Image Gene #646: 'TAOK3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'TAOK3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0885 (Fisher's exact test), Q value = 0.32

Table S7051.  Gene #646: 'TAOK3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
TAOK3 MUTATED 3 2 0
TAOK3 WILD-TYPE 48 81 77
'TAOK3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00083 (Fisher's exact test), Q value = 0.022

Table S7052.  Gene #646: 'TAOK3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
TAOK3 MUTATED 15 1 4 0
TAOK3 WILD-TYPE 163 182 97 20

Figure S2062.  Get High-res Image Gene #646: 'TAOK3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'TAOK3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.192 (Fisher's exact test), Q value = 0.49

Table S7053.  Gene #646: 'TAOK3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
TAOK3 MUTATED 5 2 9
TAOK3 WILD-TYPE 82 78 91
'TAOK3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.39 (Fisher's exact test), Q value = 0.72

Table S7054.  Gene #646: 'TAOK3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
TAOK3 MUTATED 2 5 8
TAOK3 WILD-TYPE 87 155 130
'TAOK3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.785 (Fisher's exact test), Q value = 1

Table S7055.  Gene #646: 'TAOK3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
TAOK3 MUTATED 8 4 3
TAOK3 WILD-TYPE 174 129 69
'TAOK3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.239 (Fisher's exact test), Q value = 0.56

Table S7056.  Gene #646: 'TAOK3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
TAOK3 MUTATED 3 6 6 5
TAOK3 WILD-TYPE 109 90 86 181
'TAOK3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00012 (Fisher's exact test), Q value = 0.0059

Table S7057.  Gene #646: 'TAOK3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
TAOK3 MUTATED 3 0 9 0 3 1 4
TAOK3 WILD-TYPE 57 50 40 40 60 124 95

Figure S2063.  Get High-res Image Gene #646: 'TAOK3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'TAOK3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0498 (Fisher's exact test), Q value = 0.24

Table S7058.  Gene #646: 'TAOK3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
TAOK3 MUTATED 10 3 0 6
TAOK3 WILD-TYPE 120 75 68 190

Figure S2064.  Get High-res Image Gene #646: 'TAOK3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'TAOK3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0543 (Fisher's exact test), Q value = 0.25

Table S7059.  Gene #646: 'TAOK3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
TAOK3 MUTATED 3 4 2 3 6 1 0 0 0
TAOK3 WILD-TYPE 37 58 26 77 63 47 43 28 74
'RAE1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.371 (Fisher's exact test), Q value = 0.7

Table S7060.  Gene #647: 'RAE1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
RAE1 MUTATED 2 1 0 1
RAE1 WILD-TYPE 44 57 64 42
'RAE1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.557 (Fisher's exact test), Q value = 0.87

Table S7061.  Gene #647: 'RAE1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
RAE1 MUTATED 2 1 1
RAE1 WILD-TYPE 49 82 76
'RAE1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.393 (Fisher's exact test), Q value = 0.72

Table S7062.  Gene #647: 'RAE1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
RAE1 MUTATED 5 3 0 0
RAE1 WILD-TYPE 173 180 101 20
'RAE1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.133 (Fisher's exact test), Q value = 0.41

Table S7063.  Gene #647: 'RAE1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
RAE1 MUTATED 0 1 4
RAE1 WILD-TYPE 87 79 96
'RAE1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.534 (Fisher's exact test), Q value = 0.85

Table S7064.  Gene #647: 'RAE1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
RAE1 MUTATED 1 5 2
RAE1 WILD-TYPE 88 155 136
'RAE1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.42 (Fisher's exact test), Q value = 0.75

Table S7065.  Gene #647: 'RAE1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
RAE1 MUTATED 2 4 2
RAE1 WILD-TYPE 180 129 70
'RAE1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S7066.  Gene #647: 'RAE1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
RAE1 MUTATED 2 2 1 3
RAE1 WILD-TYPE 110 94 91 183
'RAE1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.44 (Fisher's exact test), Q value = 0.77

Table S7067.  Gene #647: 'RAE1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
RAE1 MUTATED 2 1 2 0 0 1 2
RAE1 WILD-TYPE 58 49 47 40 63 124 97
'RAE1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.526 (Fisher's exact test), Q value = 0.85

Table S7068.  Gene #647: 'RAE1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
RAE1 MUTATED 1 1 0 5
RAE1 WILD-TYPE 129 77 68 191
'RAE1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.476 (Fisher's exact test), Q value = 0.8

Table S7069.  Gene #647: 'RAE1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
RAE1 MUTATED 0 0 0 2 3 1 1 0 0
RAE1 WILD-TYPE 40 62 28 78 66 47 42 28 74
'KIF2C MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0159 (Fisher's exact test), Q value = 0.13

Table S7070.  Gene #648: 'KIF2C MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
KIF2C MUTATED 1 0 0 3
KIF2C WILD-TYPE 45 58 64 40

Figure S2065.  Get High-res Image Gene #648: 'KIF2C MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'KIF2C MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.834 (Fisher's exact test), Q value = 1

Table S7071.  Gene #648: 'KIF2C MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
KIF2C MUTATED 1 1 2
KIF2C WILD-TYPE 50 82 75
'KIF2C MUTATION STATUS' versus 'CN_CNMF'

P value = 0.288 (Fisher's exact test), Q value = 0.62

Table S7072.  Gene #648: 'KIF2C MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
KIF2C MUTATED 8 3 1 0
KIF2C WILD-TYPE 170 180 100 20
'KIF2C MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S7073.  Gene #648: 'KIF2C MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
KIF2C MUTATED 2 2 3
KIF2C WILD-TYPE 85 78 97
'KIF2C MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0656 (Fisher's exact test), Q value = 0.28

Table S7074.  Gene #648: 'KIF2C MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
KIF2C MUTATED 0 7 2
KIF2C WILD-TYPE 89 153 136
'KIF2C MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0324 (Fisher's exact test), Q value = 0.18

Table S7075.  Gene #648: 'KIF2C MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
KIF2C MUTATED 2 7 0
KIF2C WILD-TYPE 180 126 72

Figure S2066.  Get High-res Image Gene #648: 'KIF2C MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'KIF2C MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.857 (Fisher's exact test), Q value = 1

Table S7076.  Gene #648: 'KIF2C MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
KIF2C MUTATED 2 3 3 4
KIF2C WILD-TYPE 110 93 89 182
'KIF2C MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0484 (Fisher's exact test), Q value = 0.23

Table S7077.  Gene #648: 'KIF2C MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
KIF2C MUTATED 2 3 3 0 1 0 3
KIF2C WILD-TYPE 58 47 46 40 62 125 96

Figure S2067.  Get High-res Image Gene #648: 'KIF2C MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'KIF2C MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.113 (Fisher's exact test), Q value = 0.37

Table S7078.  Gene #648: 'KIF2C MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
KIF2C MUTATED 1 3 4 4
KIF2C WILD-TYPE 129 75 64 192
'KIF2C MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.143 (Fisher's exact test), Q value = 0.42

Table S7079.  Gene #648: 'KIF2C MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
KIF2C MUTATED 0 2 3 1 3 0 2 0 1
KIF2C WILD-TYPE 40 60 25 79 66 48 41 28 73
'C7ORF58 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00381 (Fisher's exact test), Q value = 0.056

Table S7080.  Gene #649: 'C7ORF58 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
C7ORF58 MUTATED 3 0 0 4
C7ORF58 WILD-TYPE 43 58 64 39

Figure S2068.  Get High-res Image Gene #649: 'C7ORF58 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'C7ORF58 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.104 (Fisher's exact test), Q value = 0.36

Table S7081.  Gene #649: 'C7ORF58 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
C7ORF58 MUTATED 4 1 2
C7ORF58 WILD-TYPE 47 82 75
'C7ORF58 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0312 (Fisher's exact test), Q value = 0.18

Table S7082.  Gene #649: 'C7ORF58 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
C7ORF58 MUTATED 16 4 5 1
C7ORF58 WILD-TYPE 162 179 96 19

Figure S2069.  Get High-res Image Gene #649: 'C7ORF58 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'C7ORF58 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.07 (Fisher's exact test), Q value = 0.29

Table S7083.  Gene #649: 'C7ORF58 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
C7ORF58 MUTATED 10 6 3
C7ORF58 WILD-TYPE 77 74 97
'C7ORF58 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.176 (Fisher's exact test), Q value = 0.48

Table S7084.  Gene #649: 'C7ORF58 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
C7ORF58 MUTATED 2 8 11
C7ORF58 WILD-TYPE 87 152 127
'C7ORF58 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.73 (Fisher's exact test), Q value = 1

Table S7085.  Gene #649: 'C7ORF58 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
C7ORF58 MUTATED 9 9 3
C7ORF58 WILD-TYPE 173 124 69
'C7ORF58 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.549 (Fisher's exact test), Q value = 0.87

Table S7086.  Gene #649: 'C7ORF58 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
C7ORF58 MUTATED 6 7 6 7
C7ORF58 WILD-TYPE 106 89 86 179
'C7ORF58 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00271 (Fisher's exact test), Q value = 0.046

Table S7087.  Gene #649: 'C7ORF58 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
C7ORF58 MUTATED 3 3 7 3 4 0 6
C7ORF58 WILD-TYPE 57 47 42 37 59 125 93

Figure S2070.  Get High-res Image Gene #649: 'C7ORF58 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'C7ORF58 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.149 (Fisher's exact test), Q value = 0.43

Table S7088.  Gene #649: 'C7ORF58 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
C7ORF58 MUTATED 9 7 1 8
C7ORF58 WILD-TYPE 121 71 67 188
'C7ORF58 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00631 (Fisher's exact test), Q value = 0.073

Table S7089.  Gene #649: 'C7ORF58 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
C7ORF58 MUTATED 1 10 3 4 3 0 1 2 1
C7ORF58 WILD-TYPE 39 52 25 76 66 48 42 26 73

Figure S2071.  Get High-res Image Gene #649: 'C7ORF58 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'C7ORF58 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.115 (Fisher's exact test), Q value = 0.38

Table S7090.  Gene #649: 'C7ORF58 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
C7ORF58 MUTATED 0 2 2 3
C7ORF58 WILD-TYPE 33 29 25 16
'C7ORF58 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.731 (Fisher's exact test), Q value = 1

Table S7091.  Gene #649: 'C7ORF58 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
C7ORF58 MUTATED 3 1 2 1
C7ORF58 WILD-TYPE 51 9 22 21
'PVRL4 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0315 (Fisher's exact test), Q value = 0.18

Table S7092.  Gene #650: 'PVRL4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
PVRL4 MUTATED 3 0 0 1
PVRL4 WILD-TYPE 43 58 64 42

Figure S2072.  Get High-res Image Gene #650: 'PVRL4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'PVRL4 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00305 (Fisher's exact test), Q value = 0.049

Table S7093.  Gene #650: 'PVRL4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
PVRL4 MUTATED 4 0 0
PVRL4 WILD-TYPE 47 83 77

Figure S2073.  Get High-res Image Gene #650: 'PVRL4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'PVRL4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.487 (Fisher's exact test), Q value = 0.81

Table S7094.  Gene #650: 'PVRL4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
PVRL4 MUTATED 6 2 2 0
PVRL4 WILD-TYPE 172 181 99 20
'PVRL4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S7095.  Gene #650: 'PVRL4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
PVRL4 MUTATED 2 2 2
PVRL4 WILD-TYPE 85 78 98
'PVRL4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.221 (Fisher's exact test), Q value = 0.54

Table S7096.  Gene #650: 'PVRL4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
PVRL4 MUTATED 3 1 4
PVRL4 WILD-TYPE 86 159 134
'PVRL4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.07 (Fisher's exact test), Q value = 0.29

Table S7097.  Gene #650: 'PVRL4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
PVRL4 MUTATED 6 0 2
PVRL4 WILD-TYPE 176 133 70
'PVRL4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.845 (Fisher's exact test), Q value = 1

Table S7098.  Gene #650: 'PVRL4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
PVRL4 MUTATED 2 3 1 4
PVRL4 WILD-TYPE 110 93 91 182
'PVRL4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.175 (Fisher's exact test), Q value = 0.47

Table S7099.  Gene #650: 'PVRL4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
PVRL4 MUTATED 1 2 1 0 2 0 4
PVRL4 WILD-TYPE 59 48 48 40 61 125 95
'PVRL4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.635 (Fisher's exact test), Q value = 0.93

Table S7100.  Gene #650: 'PVRL4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
PVRL4 MUTATED 4 2 0 4
PVRL4 WILD-TYPE 126 76 68 192
'PVRL4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0175 (Fisher's exact test), Q value = 0.13

Table S7101.  Gene #650: 'PVRL4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
PVRL4 MUTATED 2 1 2 0 4 0 0 1 0
PVRL4 WILD-TYPE 38 61 26 80 65 48 43 27 74

Figure S2074.  Get High-res Image Gene #650: 'PVRL4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'MTDH MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.404 (Fisher's exact test), Q value = 0.73

Table S7102.  Gene #651: 'MTDH MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
MTDH MUTATED 1 0 1 2
MTDH WILD-TYPE 45 58 63 41
'MTDH MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.835 (Fisher's exact test), Q value = 1

Table S7103.  Gene #651: 'MTDH MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
MTDH MUTATED 1 1 2
MTDH WILD-TYPE 50 82 75
'MTDH MUTATION STATUS' versus 'CN_CNMF'

P value = 0.034 (Fisher's exact test), Q value = 0.19

Table S7104.  Gene #651: 'MTDH MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
MTDH MUTATED 9 3 0 1
MTDH WILD-TYPE 169 180 101 19

Figure S2075.  Get High-res Image Gene #651: 'MTDH MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'MTDH MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.582 (Fisher's exact test), Q value = 0.89

Table S7105.  Gene #651: 'MTDH MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
MTDH MUTATED 2 2 5
MTDH WILD-TYPE 85 78 95
'MTDH MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.508 (Fisher's exact test), Q value = 0.83

Table S7106.  Gene #651: 'MTDH MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
MTDH MUTATED 1 6 3
MTDH WILD-TYPE 88 154 135
'MTDH MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.298 (Fisher's exact test), Q value = 0.63

Table S7107.  Gene #651: 'MTDH MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
MTDH MUTATED 3 6 1
MTDH WILD-TYPE 179 127 71
'MTDH MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.629 (Fisher's exact test), Q value = 0.93

Table S7108.  Gene #651: 'MTDH MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
MTDH MUTATED 2 3 4 4
MTDH WILD-TYPE 110 93 88 182
'MTDH MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00658 (Fisher's exact test), Q value = 0.074

Table S7109.  Gene #651: 'MTDH MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
MTDH MUTATED 1 0 5 2 2 0 3
MTDH WILD-TYPE 59 50 44 38 61 125 96

Figure S2076.  Get High-res Image Gene #651: 'MTDH MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'MTDH MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.457 (Fisher's exact test), Q value = 0.78

Table S7110.  Gene #651: 'MTDH MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
MTDH MUTATED 2 4 1 6
MTDH WILD-TYPE 128 74 67 190
'MTDH MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0784 (Fisher's exact test), Q value = 0.3

Table S7111.  Gene #651: 'MTDH MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
MTDH MUTATED 1 4 1 0 5 0 1 0 1
MTDH WILD-TYPE 39 58 27 80 64 48 42 28 73
'MTDH MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.136 (Fisher's exact test), Q value = 0.41

Table S7112.  Gene #651: 'MTDH MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
MTDH MUTATED 1 0 0 2
MTDH WILD-TYPE 32 31 27 17
'MTDH MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.694 (Fisher's exact test), Q value = 0.97

Table S7113.  Gene #651: 'MTDH MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
MTDH MUTATED 1 0 1 1
MTDH WILD-TYPE 53 10 23 21
'AIFM1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.565 (Fisher's exact test), Q value = 0.87

Table S7114.  Gene #652: 'AIFM1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
AIFM1 MUTATED 7 3 3 0
AIFM1 WILD-TYPE 171 180 98 20
'AIFM1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.863 (Fisher's exact test), Q value = 1

Table S7115.  Gene #652: 'AIFM1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
AIFM1 MUTATED 3 3 5
AIFM1 WILD-TYPE 84 77 95
'AIFM1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.677 (Fisher's exact test), Q value = 0.96

Table S7116.  Gene #652: 'AIFM1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
AIFM1 MUTATED 3 3 5
AIFM1 WILD-TYPE 86 157 133
'AIFM1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.85 (Fisher's exact test), Q value = 1

Table S7117.  Gene #652: 'AIFM1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
AIFM1 MUTATED 6 4 1
AIFM1 WILD-TYPE 176 129 71
'AIFM1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.292 (Fisher's exact test), Q value = 0.62

Table S7118.  Gene #652: 'AIFM1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
AIFM1 MUTATED 4 4 3 2
AIFM1 WILD-TYPE 108 92 89 184
'AIFM1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0439 (Fisher's exact test), Q value = 0.22

Table S7119.  Gene #652: 'AIFM1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
AIFM1 MUTATED 2 1 3 3 2 0 2
AIFM1 WILD-TYPE 58 49 46 37 61 125 97

Figure S2077.  Get High-res Image Gene #652: 'AIFM1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'AIFM1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.206 (Fisher's exact test), Q value = 0.51

Table S7120.  Gene #652: 'AIFM1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
AIFM1 MUTATED 7 2 1 3
AIFM1 WILD-TYPE 123 76 67 193
'AIFM1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.477 (Fisher's exact test), Q value = 0.81

Table S7121.  Gene #652: 'AIFM1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
AIFM1 MUTATED 2 2 2 2 3 1 1 0 0
AIFM1 WILD-TYPE 38 60 26 78 66 47 42 28 74
'WNK4 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.121 (Fisher's exact test), Q value = 0.39

Table S7122.  Gene #653: 'WNK4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
WNK4 MUTATED 2 0 0 1
WNK4 WILD-TYPE 44 58 64 42
'WNK4 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0134 (Fisher's exact test), Q value = 0.11

Table S7123.  Gene #653: 'WNK4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
WNK4 MUTATED 3 0 0
WNK4 WILD-TYPE 48 83 77

Figure S2078.  Get High-res Image Gene #653: 'WNK4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'WNK4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00218 (Fisher's exact test), Q value = 0.04

Table S7124.  Gene #653: 'WNK4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
WNK4 MUTATED 11 1 0 0
WNK4 WILD-TYPE 167 182 101 20

Figure S2079.  Get High-res Image Gene #653: 'WNK4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'WNK4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.113 (Fisher's exact test), Q value = 0.37

Table S7125.  Gene #653: 'WNK4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
WNK4 MUTATED 4 0 5
WNK4 WILD-TYPE 83 80 95
'WNK4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0472 (Fisher's exact test), Q value = 0.23

Table S7126.  Gene #653: 'WNK4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
WNK4 MUTATED 2 1 7
WNK4 WILD-TYPE 87 159 131

Figure S2080.  Get High-res Image Gene #653: 'WNK4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'WNK4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.69 (Fisher's exact test), Q value = 0.97

Table S7127.  Gene #653: 'WNK4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
WNK4 MUTATED 6 2 2
WNK4 WILD-TYPE 176 131 70
'WNK4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0295 (Fisher's exact test), Q value = 0.18

Table S7128.  Gene #653: 'WNK4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
WNK4 MUTATED 0 5 4 3
WNK4 WILD-TYPE 112 91 88 183

Figure S2081.  Get High-res Image Gene #653: 'WNK4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'WNK4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00057 (Fisher's exact test), Q value = 0.017

Table S7129.  Gene #653: 'WNK4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
WNK4 MUTATED 0 2 6 0 1 0 3
WNK4 WILD-TYPE 60 48 43 40 62 125 96

Figure S2082.  Get High-res Image Gene #653: 'WNK4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'WNK4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.522 (Fisher's exact test), Q value = 0.84

Table S7130.  Gene #653: 'WNK4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
WNK4 MUTATED 3 3 0 6
WNK4 WILD-TYPE 127 75 68 190
'WNK4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0405 (Fisher's exact test), Q value = 0.21

Table S7131.  Gene #653: 'WNK4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
WNK4 MUTATED 1 4 0 0 5 0 0 1 1
WNK4 WILD-TYPE 39 58 28 80 64 48 43 27 73

Figure S2083.  Get High-res Image Gene #653: 'WNK4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'POLM MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0158 (Fisher's exact test), Q value = 0.12

Table S7132.  Gene #654: 'POLM MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
POLM MUTATED 10 2 0 0
POLM WILD-TYPE 168 181 101 20

Figure S2084.  Get High-res Image Gene #654: 'POLM MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'POLM MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.149 (Fisher's exact test), Q value = 0.43

Table S7133.  Gene #654: 'POLM MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
POLM MUTATED 3 1 7
POLM WILD-TYPE 84 79 93
'POLM MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.628 (Fisher's exact test), Q value = 0.92

Table S7134.  Gene #654: 'POLM MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
POLM MUTATED 1 5 5
POLM WILD-TYPE 88 155 133
'POLM MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.287 (Fisher's exact test), Q value = 0.62

Table S7135.  Gene #654: 'POLM MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
POLM MUTATED 6 5 0
POLM WILD-TYPE 176 128 72
'POLM MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00818 (Fisher's exact test), Q value = 0.084

Table S7136.  Gene #654: 'POLM MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
POLM MUTATED 1 6 4 1
POLM WILD-TYPE 111 90 88 185

Figure S2085.  Get High-res Image Gene #654: 'POLM MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'POLM MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 5e-05 (Fisher's exact test), Q value = 0.0032

Table S7137.  Gene #654: 'POLM MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
POLM MUTATED 0 2 7 1 0 0 2
POLM WILD-TYPE 60 48 42 39 63 125 97

Figure S2086.  Get High-res Image Gene #654: 'POLM MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'POLM MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.758 (Fisher's exact test), Q value = 1

Table S7138.  Gene #654: 'POLM MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
POLM MUTATED 5 2 1 4
POLM WILD-TYPE 125 76 67 192
'POLM MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0901 (Fisher's exact test), Q value = 0.33

Table S7139.  Gene #654: 'POLM MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
POLM MUTATED 1 4 1 0 4 0 0 1 1
POLM WILD-TYPE 39 58 27 80 65 48 43 27 73
'RCSD1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.31 (Fisher's exact test), Q value = 0.64

Table S7140.  Gene #655: 'RCSD1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
RCSD1 MUTATED 1 1 0 2
RCSD1 WILD-TYPE 45 57 64 41
'RCSD1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.556 (Fisher's exact test), Q value = 0.87

Table S7141.  Gene #655: 'RCSD1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
RCSD1 MUTATED 2 1 1
RCSD1 WILD-TYPE 49 82 76
'RCSD1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.121 (Fisher's exact test), Q value = 0.39

Table S7142.  Gene #655: 'RCSD1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
RCSD1 MUTATED 10 4 1 1
RCSD1 WILD-TYPE 168 179 100 19
'RCSD1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.534 (Fisher's exact test), Q value = 0.85

Table S7143.  Gene #655: 'RCSD1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
RCSD1 MUTATED 4 2 6
RCSD1 WILD-TYPE 83 78 94
'RCSD1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.876 (Fisher's exact test), Q value = 1

Table S7144.  Gene #655: 'RCSD1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
RCSD1 MUTATED 2 6 5
RCSD1 WILD-TYPE 87 154 133
'RCSD1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.935 (Fisher's exact test), Q value = 1

Table S7145.  Gene #655: 'RCSD1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
RCSD1 MUTATED 7 4 2
RCSD1 WILD-TYPE 175 129 70
'RCSD1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.242 (Fisher's exact test), Q value = 0.57

Table S7146.  Gene #655: 'RCSD1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
RCSD1 MUTATED 2 5 5 4
RCSD1 WILD-TYPE 110 91 87 182
'RCSD1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0285 (Fisher's exact test), Q value = 0.17

Table S7147.  Gene #655: 'RCSD1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
RCSD1 MUTATED 0 1 5 2 3 1 4
RCSD1 WILD-TYPE 60 49 44 38 60 124 95

Figure S2087.  Get High-res Image Gene #655: 'RCSD1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'RCSD1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.114 (Fisher's exact test), Q value = 0.37

Table S7148.  Gene #655: 'RCSD1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
RCSD1 MUTATED 6 5 0 5
RCSD1 WILD-TYPE 124 73 68 191
'RCSD1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0464 (Fisher's exact test), Q value = 0.23

Table S7149.  Gene #655: 'RCSD1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
RCSD1 MUTATED 1 6 1 1 5 1 1 0 0
RCSD1 WILD-TYPE 39 56 27 79 64 47 42 28 74

Figure S2088.  Get High-res Image Gene #655: 'RCSD1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'RCSD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.045 (Fisher's exact test), Q value = 0.23

Table S7150.  Gene #655: 'RCSD1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
RCSD1 MUTATED 0 3 0 2
RCSD1 WILD-TYPE 33 28 27 17

Figure S2089.  Get High-res Image Gene #655: 'RCSD1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'RCSD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.115 (Fisher's exact test), Q value = 0.38

Table S7151.  Gene #655: 'RCSD1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
RCSD1 MUTATED 2 2 1 0
RCSD1 WILD-TYPE 52 8 23 22
'CSNK1D MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0161 (Fisher's exact test), Q value = 0.13

Table S7152.  Gene #656: 'CSNK1D MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
CSNK1D MUTATED 1 0 0 3
CSNK1D WILD-TYPE 45 58 64 40

Figure S2090.  Get High-res Image Gene #656: 'CSNK1D MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'CSNK1D MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0394 (Fisher's exact test), Q value = 0.21

Table S7153.  Gene #656: 'CSNK1D MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
CSNK1D MUTATED 3 0 1
CSNK1D WILD-TYPE 48 83 76

Figure S2091.  Get High-res Image Gene #656: 'CSNK1D MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'CSNK1D MUTATION STATUS' versus 'CN_CNMF'

P value = 0.056 (Fisher's exact test), Q value = 0.26

Table S7154.  Gene #656: 'CSNK1D MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
CSNK1D MUTATED 10 5 0 0
CSNK1D WILD-TYPE 168 178 101 20
'CSNK1D MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.686 (Fisher's exact test), Q value = 0.96

Table S7155.  Gene #656: 'CSNK1D MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
CSNK1D MUTATED 5 3 3
CSNK1D WILD-TYPE 82 77 97
'CSNK1D MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.301 (Fisher's exact test), Q value = 0.63

Table S7156.  Gene #656: 'CSNK1D MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
CSNK1D MUTATED 2 4 8
CSNK1D WILD-TYPE 87 156 130
'CSNK1D MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.768 (Fisher's exact test), Q value = 1

Table S7157.  Gene #656: 'CSNK1D MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
CSNK1D MUTATED 8 4 2
CSNK1D WILD-TYPE 174 129 70
'CSNK1D MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.335 (Fisher's exact test), Q value = 0.66

Table S7158.  Gene #656: 'CSNK1D MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
CSNK1D MUTATED 2 4 5 4
CSNK1D WILD-TYPE 110 92 87 182
'CSNK1D MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0536 (Fisher's exact test), Q value = 0.25

Table S7159.  Gene #656: 'CSNK1D MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
CSNK1D MUTATED 2 2 4 1 3 0 3
CSNK1D WILD-TYPE 58 48 45 39 60 125 96
'CSNK1D MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0957 (Fisher's exact test), Q value = 0.34

Table S7160.  Gene #656: 'CSNK1D MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
CSNK1D MUTATED 5 5 0 4
CSNK1D WILD-TYPE 125 73 68 192
'CSNK1D MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0255 (Fisher's exact test), Q value = 0.16

Table S7161.  Gene #656: 'CSNK1D MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
CSNK1D MUTATED 0 6 0 0 4 1 2 0 1
CSNK1D WILD-TYPE 40 56 28 80 65 47 41 28 73

Figure S2092.  Get High-res Image Gene #656: 'CSNK1D MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'CSNK1D MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0952 (Fisher's exact test), Q value = 0.34

Table S7162.  Gene #656: 'CSNK1D MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
CSNK1D MUTATED 2 0 0 2
CSNK1D WILD-TYPE 31 31 27 17
'CSNK1D MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.766 (Fisher's exact test), Q value = 1

Table S7163.  Gene #656: 'CSNK1D MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
CSNK1D MUTATED 3 0 0 1
CSNK1D WILD-TYPE 51 10 24 21
'GPNMB MUTATION STATUS' versus 'CN_CNMF'

P value = 0.543 (Fisher's exact test), Q value = 0.86

Table S7164.  Gene #657: 'GPNMB MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
GPNMB MUTATED 8 4 2 0
GPNMB WILD-TYPE 170 179 99 20
'GPNMB MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.71 (Fisher's exact test), Q value = 0.98

Table S7165.  Gene #657: 'GPNMB MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
GPNMB MUTATED 3 5 4
GPNMB WILD-TYPE 84 75 96
'GPNMB MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.141 (Fisher's exact test), Q value = 0.42

Table S7166.  Gene #657: 'GPNMB MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
GPNMB MUTATED 0 6 6
GPNMB WILD-TYPE 89 154 132
'GPNMB MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.21 (Fisher's exact test), Q value = 0.52

Table S7167.  Gene #657: 'GPNMB MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
GPNMB MUTATED 6 6 0
GPNMB WILD-TYPE 176 127 72
'GPNMB MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0388 (Fisher's exact test), Q value = 0.21

Table S7168.  Gene #657: 'GPNMB MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
GPNMB MUTATED 6 1 5 2
GPNMB WILD-TYPE 106 95 87 184

Figure S2093.  Get High-res Image Gene #657: 'GPNMB MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'GPNMB MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0124 (Fisher's exact test), Q value = 0.11

Table S7169.  Gene #657: 'GPNMB MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
GPNMB MUTATED 5 2 3 0 2 0 2
GPNMB WILD-TYPE 55 48 46 40 61 125 97

Figure S2094.  Get High-res Image Gene #657: 'GPNMB MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'GPNMB MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.391 (Fisher's exact test), Q value = 0.72

Table S7170.  Gene #657: 'GPNMB MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
GPNMB MUTATED 5 3 3 3
GPNMB WILD-TYPE 125 75 65 193
'GPNMB MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.134 (Fisher's exact test), Q value = 0.41

Table S7171.  Gene #657: 'GPNMB MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
GPNMB MUTATED 0 4 2 2 3 0 2 1 0
GPNMB WILD-TYPE 40 58 26 78 66 48 41 27 74
'GPNMB MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0601 (Fisher's exact test), Q value = 0.27

Table S7172.  Gene #657: 'GPNMB MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
GPNMB MUTATED 0 0 1 2
GPNMB WILD-TYPE 33 31 26 17
'GPNMB MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S7173.  Gene #657: 'GPNMB MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
GPNMB MUTATED 2 0 1 0
GPNMB WILD-TYPE 52 10 23 22
'ATP11C MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.375 (Fisher's exact test), Q value = 0.7

Table S7174.  Gene #658: 'ATP11C MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ATP11C MUTATED 4 1 2 2
ATP11C WILD-TYPE 42 57 62 41
'ATP11C MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.377 (Fisher's exact test), Q value = 0.71

Table S7175.  Gene #658: 'ATP11C MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ATP11C MUTATED 4 3 2
ATP11C WILD-TYPE 47 80 75
'ATP11C MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0105 (Fisher's exact test), Q value = 0.098

Table S7176.  Gene #658: 'ATP11C MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ATP11C MUTATED 17 8 1 2
ATP11C WILD-TYPE 161 175 100 18

Figure S2095.  Get High-res Image Gene #658: 'ATP11C MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ATP11C MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.107 (Fisher's exact test), Q value = 0.36

Table S7177.  Gene #658: 'ATP11C MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ATP11C MUTATED 8 2 10
ATP11C WILD-TYPE 79 78 90
'ATP11C MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0226 (Fisher's exact test), Q value = 0.15

Table S7178.  Gene #658: 'ATP11C MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ATP11C MUTATED 1 7 13
ATP11C WILD-TYPE 88 153 125

Figure S2096.  Get High-res Image Gene #658: 'ATP11C MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'ATP11C MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.221 (Fisher's exact test), Q value = 0.53

Table S7179.  Gene #658: 'ATP11C MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ATP11C MUTATED 14 5 2
ATP11C WILD-TYPE 168 128 70
'ATP11C MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0224 (Fisher's exact test), Q value = 0.15

Table S7180.  Gene #658: 'ATP11C MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ATP11C MUTATED 2 11 7 9
ATP11C WILD-TYPE 110 85 85 177

Figure S2097.  Get High-res Image Gene #658: 'ATP11C MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'ATP11C MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00792 (Fisher's exact test), Q value = 0.083

Table S7181.  Gene #658: 'ATP11C MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ATP11C MUTATED 1 6 7 3 3 2 7
ATP11C WILD-TYPE 59 44 42 37 60 123 92

Figure S2098.  Get High-res Image Gene #658: 'ATP11C MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ATP11C MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0777 (Fisher's exact test), Q value = 0.3

Table S7182.  Gene #658: 'ATP11C MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ATP11C MUTATED 12 6 1 8
ATP11C WILD-TYPE 118 72 67 188
'ATP11C MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.394 (Fisher's exact test), Q value = 0.72

Table S7183.  Gene #658: 'ATP11C MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ATP11C MUTATED 5 5 2 5 4 1 3 0 2
ATP11C WILD-TYPE 35 57 26 75 65 47 40 28 72
'ATP11C MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.662 (Fisher's exact test), Q value = 0.95

Table S7184.  Gene #658: 'ATP11C MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
ATP11C MUTATED 2 2 2 3
ATP11C WILD-TYPE 31 29 25 16
'ATP11C MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.834 (Fisher's exact test), Q value = 1

Table S7185.  Gene #658: 'ATP11C MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
ATP11C MUTATED 6 0 2 1
ATP11C WILD-TYPE 48 10 22 21
'IQGAP1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00014 (Fisher's exact test), Q value = 0.0066

Table S7186.  Gene #659: 'IQGAP1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
IQGAP1 MUTATED 7 0 0 4
IQGAP1 WILD-TYPE 39 58 64 39

Figure S2099.  Get High-res Image Gene #659: 'IQGAP1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'IQGAP1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 2e-05 (Fisher's exact test), Q value = 0.0017

Table S7187.  Gene #659: 'IQGAP1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
IQGAP1 MUTATED 10 0 1
IQGAP1 WILD-TYPE 41 83 76

Figure S2100.  Get High-res Image Gene #659: 'IQGAP1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'IQGAP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00497 (Fisher's exact test), Q value = 0.064

Table S7188.  Gene #659: 'IQGAP1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
IQGAP1 MUTATED 17 3 4 0
IQGAP1 WILD-TYPE 161 180 97 20

Figure S2101.  Get High-res Image Gene #659: 'IQGAP1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'IQGAP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.175 (Fisher's exact test), Q value = 0.47

Table S7189.  Gene #659: 'IQGAP1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
IQGAP1 MUTATED 6 1 6
IQGAP1 WILD-TYPE 81 79 94
'IQGAP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0898 (Fisher's exact test), Q value = 0.33

Table S7190.  Gene #659: 'IQGAP1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
IQGAP1 MUTATED 1 9 10
IQGAP1 WILD-TYPE 88 151 128
'IQGAP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.628 (Fisher's exact test), Q value = 0.92

Table S7191.  Gene #659: 'IQGAP1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
IQGAP1 MUTATED 11 7 2
IQGAP1 WILD-TYPE 171 126 70
'IQGAP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.537 (Fisher's exact test), Q value = 0.86

Table S7192.  Gene #659: 'IQGAP1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
IQGAP1 MUTATED 3 4 6 11
IQGAP1 WILD-TYPE 109 92 86 175
'IQGAP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00048 (Fisher's exact test), Q value = 0.015

Table S7193.  Gene #659: 'IQGAP1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
IQGAP1 MUTATED 1 5 5 1 2 0 10
IQGAP1 WILD-TYPE 59 45 44 39 61 125 89

Figure S2102.  Get High-res Image Gene #659: 'IQGAP1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'IQGAP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0636 (Fisher's exact test), Q value = 0.27

Table S7194.  Gene #659: 'IQGAP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
IQGAP1 MUTATED 10 2 0 9
IQGAP1 WILD-TYPE 120 76 68 187
'IQGAP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00208 (Fisher's exact test), Q value = 0.038

Table S7195.  Gene #659: 'IQGAP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
IQGAP1 MUTATED 4 1 0 3 10 1 1 1 0
IQGAP1 WILD-TYPE 36 61 28 77 59 47 42 27 74

Figure S2103.  Get High-res Image Gene #659: 'IQGAP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'IQGAP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0793 (Fisher's exact test), Q value = 0.3

Table S7196.  Gene #659: 'IQGAP1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
IQGAP1 MUTATED 3 0 0 2
IQGAP1 WILD-TYPE 30 31 27 17
'IQGAP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.634 (Fisher's exact test), Q value = 0.93

Table S7197.  Gene #659: 'IQGAP1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
IQGAP1 MUTATED 4 0 0 1
IQGAP1 WILD-TYPE 50 10 24 21
'TRMT5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0398 (Fisher's exact test), Q value = 0.21

Table S7198.  Gene #660: 'TRMT5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
TRMT5 MUTATED 6 1 0 1
TRMT5 WILD-TYPE 172 182 101 19

Figure S2104.  Get High-res Image Gene #660: 'TRMT5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'TRMT5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S7199.  Gene #660: 'TRMT5 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
TRMT5 MUTATED 2 2 2
TRMT5 WILD-TYPE 85 78 98
'TRMT5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.312 (Fisher's exact test), Q value = 0.64

Table S7200.  Gene #660: 'TRMT5 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
TRMT5 MUTATED 0 4 4
TRMT5 WILD-TYPE 89 156 134
'TRMT5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.46 (Fisher's exact test), Q value = 0.79

Table S7201.  Gene #660: 'TRMT5 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
TRMT5 MUTATED 5 1 2
TRMT5 WILD-TYPE 177 132 70
'TRMT5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.769 (Fisher's exact test), Q value = 1

Table S7202.  Gene #660: 'TRMT5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
TRMT5 MUTATED 2 2 2 2
TRMT5 WILD-TYPE 110 94 90 184
'TRMT5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.067 (Fisher's exact test), Q value = 0.28

Table S7203.  Gene #660: 'TRMT5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
TRMT5 MUTATED 2 0 2 2 1 0 1
TRMT5 WILD-TYPE 58 50 47 38 62 125 98
'TRMT5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.385 (Fisher's exact test), Q value = 0.71

Table S7204.  Gene #660: 'TRMT5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
TRMT5 MUTATED 4 1 0 2
TRMT5 WILD-TYPE 126 77 68 194
'TRMT5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.309 (Fisher's exact test), Q value = 0.64

Table S7205.  Gene #660: 'TRMT5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
TRMT5 MUTATED 1 3 0 0 1 1 1 0 0
TRMT5 WILD-TYPE 39 59 28 80 68 47 42 28 74
'MAP7D3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0224 (Fisher's exact test), Q value = 0.15

Table S7206.  Gene #661: 'MAP7D3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
MAP7D3 MUTATED 2 0 0 3
MAP7D3 WILD-TYPE 44 58 64 40

Figure S2105.  Get High-res Image Gene #661: 'MAP7D3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'MAP7D3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.636 (Fisher's exact test), Q value = 0.93

Table S7207.  Gene #661: 'MAP7D3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
MAP7D3 MUTATED 2 1 2
MAP7D3 WILD-TYPE 49 82 75
'MAP7D3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0567 (Fisher's exact test), Q value = 0.26

Table S7208.  Gene #661: 'MAP7D3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
MAP7D3 MUTATED 15 5 3 0
MAP7D3 WILD-TYPE 163 178 98 20
'MAP7D3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.36 (Fisher's exact test), Q value = 0.69

Table S7209.  Gene #661: 'MAP7D3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
MAP7D3 MUTATED 8 3 6
MAP7D3 WILD-TYPE 79 77 94
'MAP7D3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.484 (Fisher's exact test), Q value = 0.81

Table S7210.  Gene #661: 'MAP7D3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
MAP7D3 MUTATED 3 6 9
MAP7D3 WILD-TYPE 86 154 129
'MAP7D3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.773 (Fisher's exact test), Q value = 1

Table S7211.  Gene #661: 'MAP7D3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
MAP7D3 MUTATED 9 7 2
MAP7D3 WILD-TYPE 173 126 70
'MAP7D3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.113 (Fisher's exact test), Q value = 0.37

Table S7212.  Gene #661: 'MAP7D3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
MAP7D3 MUTATED 2 7 7 7
MAP7D3 WILD-TYPE 110 89 85 179
'MAP7D3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0426 (Fisher's exact test), Q value = 0.22

Table S7213.  Gene #661: 'MAP7D3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
MAP7D3 MUTATED 2 2 7 3 2 2 5
MAP7D3 WILD-TYPE 58 48 42 37 61 123 94

Figure S2106.  Get High-res Image Gene #661: 'MAP7D3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'MAP7D3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.873 (Fisher's exact test), Q value = 1

Table S7214.  Gene #661: 'MAP7D3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
MAP7D3 MUTATED 7 3 2 11
MAP7D3 WILD-TYPE 123 75 66 185
'MAP7D3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0825 (Fisher's exact test), Q value = 0.31

Table S7215.  Gene #661: 'MAP7D3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
MAP7D3 MUTATED 2 3 2 1 6 0 5 0 4
MAP7D3 WILD-TYPE 38 59 26 79 63 48 38 28 70
'MAP7D3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.394 (Fisher's exact test), Q value = 0.72

Table S7216.  Gene #661: 'MAP7D3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
MAP7D3 MUTATED 2 1 0 2
MAP7D3 WILD-TYPE 31 30 27 17
'MAP7D3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.263 (Fisher's exact test), Q value = 0.59

Table S7217.  Gene #661: 'MAP7D3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
MAP7D3 MUTATED 5 0 0 0
MAP7D3 WILD-TYPE 49 10 24 22
'BFAR MUTATION STATUS' versus 'CN_CNMF'

P value = 0.458 (Fisher's exact test), Q value = 0.79

Table S7218.  Gene #662: 'BFAR MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
BFAR MUTATED 6 2 1 0
BFAR WILD-TYPE 172 181 100 20
'BFAR MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.495 (Fisher's exact test), Q value = 0.82

Table S7219.  Gene #662: 'BFAR MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
BFAR MUTATED 4 1 3
BFAR WILD-TYPE 83 79 97
'BFAR MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0777 (Fisher's exact test), Q value = 0.3

Table S7220.  Gene #662: 'BFAR MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
BFAR MUTATED 0 1 5
BFAR WILD-TYPE 89 159 133
'BFAR MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S7221.  Gene #662: 'BFAR MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
BFAR MUTATED 3 2 1
BFAR WILD-TYPE 179 131 71
'BFAR MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.391 (Fisher's exact test), Q value = 0.72

Table S7222.  Gene #662: 'BFAR MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
BFAR MUTATED 1 3 3 2
BFAR WILD-TYPE 111 93 89 184
'BFAR MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0972 (Fisher's exact test), Q value = 0.34

Table S7223.  Gene #662: 'BFAR MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
BFAR MUTATED 0 1 2 3 1 1 1
BFAR WILD-TYPE 60 49 47 37 62 124 98
'BFAR MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.504 (Fisher's exact test), Q value = 0.83

Table S7224.  Gene #662: 'BFAR MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
BFAR MUTATED 4 2 1 2
BFAR WILD-TYPE 126 76 67 194
'BFAR MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.074 (Fisher's exact test), Q value = 0.29

Table S7225.  Gene #662: 'BFAR MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
BFAR MUTATED 2 3 0 0 0 0 2 1 1
BFAR WILD-TYPE 38 59 28 80 69 48 41 27 73
'KCTD16 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.627 (Fisher's exact test), Q value = 0.92

Table S7226.  Gene #663: 'KCTD16 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
KCTD16 MUTATED 1 1 0 1
KCTD16 WILD-TYPE 45 57 64 42
'KCTD16 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S7227.  Gene #663: 'KCTD16 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
KCTD16 MUTATED 1 1 1
KCTD16 WILD-TYPE 50 82 76
'KCTD16 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.557 (Fisher's exact test), Q value = 0.87

Table S7228.  Gene #663: 'KCTD16 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
KCTD16 MUTATED 4 7 2 1
KCTD16 WILD-TYPE 174 176 99 19
'KCTD16 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.313 (Fisher's exact test), Q value = 0.64

Table S7229.  Gene #663: 'KCTD16 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
KCTD16 MUTATED 5 1 5
KCTD16 WILD-TYPE 82 79 95
'KCTD16 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.102 (Fisher's exact test), Q value = 0.35

Table S7230.  Gene #663: 'KCTD16 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
KCTD16 MUTATED 0 7 3
KCTD16 WILD-TYPE 89 153 135
'KCTD16 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.482 (Fisher's exact test), Q value = 0.81

Table S7231.  Gene #663: 'KCTD16 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
KCTD16 MUTATED 3 5 2
KCTD16 WILD-TYPE 179 128 70
'KCTD16 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.364 (Fisher's exact test), Q value = 0.69

Table S7232.  Gene #663: 'KCTD16 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
KCTD16 MUTATED 3 5 3 3
KCTD16 WILD-TYPE 109 91 89 183
'KCTD16 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0413 (Fisher's exact test), Q value = 0.21

Table S7233.  Gene #663: 'KCTD16 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
KCTD16 MUTATED 2 2 4 3 1 1 1
KCTD16 WILD-TYPE 58 48 45 37 62 124 98

Figure S2107.  Get High-res Image Gene #663: 'KCTD16 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'KCTD16 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.332 (Fisher's exact test), Q value = 0.66

Table S7234.  Gene #663: 'KCTD16 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
KCTD16 MUTATED 5 4 2 3
KCTD16 WILD-TYPE 125 74 66 193
'KCTD16 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.395 (Fisher's exact test), Q value = 0.72

Table S7235.  Gene #663: 'KCTD16 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
KCTD16 MUTATED 1 2 2 2 4 1 2 0 0
KCTD16 WILD-TYPE 39 60 26 78 65 47 41 28 74
'KCTD16 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.766 (Fisher's exact test), Q value = 1

Table S7236.  Gene #663: 'KCTD16 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
KCTD16 MUTATED 2 1 2 2
KCTD16 WILD-TYPE 31 30 25 17
'KCTD16 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.779 (Fisher's exact test), Q value = 1

Table S7237.  Gene #663: 'KCTD16 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
KCTD16 MUTATED 3 0 2 2
KCTD16 WILD-TYPE 51 10 22 20
'MFN1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.542 (Fisher's exact test), Q value = 0.86

Table S7238.  Gene #664: 'MFN1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
MFN1 MUTATED 8 4 2 0
MFN1 WILD-TYPE 170 179 99 20
'MFN1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.495 (Fisher's exact test), Q value = 0.82

Table S7239.  Gene #664: 'MFN1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
MFN1 MUTATED 2 4 6
MFN1 WILD-TYPE 85 76 94
'MFN1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0825 (Fisher's exact test), Q value = 0.31

Table S7240.  Gene #664: 'MFN1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
MFN1 MUTATED 0 5 7
MFN1 WILD-TYPE 89 155 131
'MFN1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.209 (Fisher's exact test), Q value = 0.52

Table S7241.  Gene #664: 'MFN1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
MFN1 MUTATED 6 6 0
MFN1 WILD-TYPE 176 127 72
'MFN1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0843 (Fisher's exact test), Q value = 0.31

Table S7242.  Gene #664: 'MFN1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
MFN1 MUTATED 3 3 6 2
MFN1 WILD-TYPE 109 93 86 184
'MFN1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 6e-05 (Fisher's exact test), Q value = 0.0037

Table S7243.  Gene #664: 'MFN1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
MFN1 MUTATED 4 1 7 0 1 0 1
MFN1 WILD-TYPE 56 49 42 40 62 125 98

Figure S2108.  Get High-res Image Gene #664: 'MFN1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'MFN1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0527 (Fisher's exact test), Q value = 0.25

Table S7244.  Gene #664: 'MFN1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
MFN1 MUTATED 7 4 0 3
MFN1 WILD-TYPE 123 74 68 193
'MFN1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0747 (Fisher's exact test), Q value = 0.29

Table S7245.  Gene #664: 'MFN1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
MFN1 MUTATED 2 5 1 1 4 1 0 0 0
MFN1 WILD-TYPE 38 57 27 79 65 47 43 28 74
'MFN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.12 (Fisher's exact test), Q value = 0.39

Table S7246.  Gene #664: 'MFN1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
MFN1 MUTATED 2 1 0 3
MFN1 WILD-TYPE 31 30 27 16
'MFN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.394 (Fisher's exact test), Q value = 0.72

Table S7247.  Gene #664: 'MFN1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
MFN1 MUTATED 3 1 2 0
MFN1 WILD-TYPE 51 9 22 22
'ELF3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.345 (Fisher's exact test), Q value = 0.67

Table S7248.  Gene #665: 'ELF3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ELF3 MUTATED 1 0 3 2
ELF3 WILD-TYPE 45 58 61 41
'ELF3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0323 (Fisher's exact test), Q value = 0.18

Table S7249.  Gene #665: 'ELF3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ELF3 MUTATED 1 0 5
ELF3 WILD-TYPE 50 83 72

Figure S2109.  Get High-res Image Gene #665: 'ELF3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'ELF3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.579 (Fisher's exact test), Q value = 0.88

Table S7250.  Gene #665: 'ELF3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ELF3 MUTATED 5 2 3 0
ELF3 WILD-TYPE 173 181 98 20
'ELF3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0381 (Fisher's exact test), Q value = 0.2

Table S7251.  Gene #665: 'ELF3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ELF3 MUTATED 0 0 4
ELF3 WILD-TYPE 87 80 96

Figure S2110.  Get High-res Image Gene #665: 'ELF3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'ELF3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.22 (Fisher's exact test), Q value = 0.53

Table S7252.  Gene #665: 'ELF3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ELF3 MUTATED 3 1 4
ELF3 WILD-TYPE 86 159 134
'ELF3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.327 (Fisher's exact test), Q value = 0.66

Table S7253.  Gene #665: 'ELF3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ELF3 MUTATED 6 1 1
ELF3 WILD-TYPE 176 132 71
'ELF3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0553 (Fisher's exact test), Q value = 0.26

Table S7254.  Gene #665: 'ELF3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ELF3 MUTATED 0 5 2 3
ELF3 WILD-TYPE 112 91 90 183
'ELF3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0667 (Fisher's exact test), Q value = 0.28

Table S7255.  Gene #665: 'ELF3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ELF3 MUTATED 1 2 1 1 0 0 5
ELF3 WILD-TYPE 59 48 48 39 63 125 94
'ELF3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.255 (Fisher's exact test), Q value = 0.58

Table S7256.  Gene #665: 'ELF3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ELF3 MUTATED 2 0 3 5
ELF3 WILD-TYPE 128 78 65 191
'ELF3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.292 (Fisher's exact test), Q value = 0.62

Table S7257.  Gene #665: 'ELF3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ELF3 MUTATED 0 0 2 2 1 0 2 1 2
ELF3 WILD-TYPE 40 62 26 78 68 48 41 27 72
'TAPBP MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.403 (Fisher's exact test), Q value = 0.73

Table S7258.  Gene #666: 'TAPBP MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
TAPBP MUTATED 1 0 1 2
TAPBP WILD-TYPE 45 58 63 41
'TAPBP MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.178 (Fisher's exact test), Q value = 0.48

Table S7259.  Gene #666: 'TAPBP MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
TAPBP MUTATED 2 0 2
TAPBP WILD-TYPE 49 83 75
'TAPBP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.79 (Fisher's exact test), Q value = 1

Table S7260.  Gene #666: 'TAPBP MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
TAPBP MUTATED 3 1 1 0
TAPBP WILD-TYPE 175 182 100 20
'TAPBP MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.83 (Fisher's exact test), Q value = 1

Table S7261.  Gene #666: 'TAPBP MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
TAPBP MUTATED 1 1 2
TAPBP WILD-TYPE 88 159 136
'TAPBP MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.403 (Fisher's exact test), Q value = 0.73

Table S7262.  Gene #666: 'TAPBP MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
TAPBP MUTATED 3 0 1
TAPBP WILD-TYPE 179 133 71
'TAPBP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.426 (Fisher's exact test), Q value = 0.75

Table S7263.  Gene #666: 'TAPBP MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
TAPBP MUTATED 2 0 0 3
TAPBP WILD-TYPE 110 96 92 183
'TAPBP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.586 (Fisher's exact test), Q value = 0.89

Table S7264.  Gene #666: 'TAPBP MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
TAPBP MUTATED 1 0 0 0 0 1 3
TAPBP WILD-TYPE 59 50 49 40 63 124 96
'TAPBP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.587 (Fisher's exact test), Q value = 0.89

Table S7265.  Gene #666: 'TAPBP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
TAPBP MUTATED 1 0 0 4
TAPBP WILD-TYPE 129 78 68 192
'TAPBP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.387 (Fisher's exact test), Q value = 0.71

Table S7266.  Gene #666: 'TAPBP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
TAPBP MUTATED 0 0 1 1 1 1 0 1 0
TAPBP WILD-TYPE 40 62 27 79 68 47 43 27 74
'RBM19 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00752 (Fisher's exact test), Q value = 0.081

Table S7267.  Gene #667: 'RBM19 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
RBM19 MUTATED 4 0 0 2
RBM19 WILD-TYPE 42 58 64 41

Figure S2111.  Get High-res Image Gene #667: 'RBM19 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'RBM19 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00019 (Fisher's exact test), Q value = 0.008

Table S7268.  Gene #667: 'RBM19 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
RBM19 MUTATED 6 0 0
RBM19 WILD-TYPE 45 83 77

Figure S2112.  Get High-res Image Gene #667: 'RBM19 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'RBM19 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0565 (Fisher's exact test), Q value = 0.26

Table S7269.  Gene #667: 'RBM19 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
RBM19 MUTATED 14 5 2 0
RBM19 WILD-TYPE 164 178 99 20
'RBM19 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.946 (Fisher's exact test), Q value = 1

Table S7270.  Gene #667: 'RBM19 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
RBM19 MUTATED 5 5 5
RBM19 WILD-TYPE 82 75 95
'RBM19 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00623 (Fisher's exact test), Q value = 0.072

Table S7271.  Gene #667: 'RBM19 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
RBM19 MUTATED 3 2 12
RBM19 WILD-TYPE 86 158 126

Figure S2113.  Get High-res Image Gene #667: 'RBM19 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'RBM19 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.261 (Fisher's exact test), Q value = 0.58

Table S7272.  Gene #667: 'RBM19 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
RBM19 MUTATED 11 3 3
RBM19 WILD-TYPE 171 130 69
'RBM19 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.504 (Fisher's exact test), Q value = 0.83

Table S7273.  Gene #667: 'RBM19 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
RBM19 MUTATED 6 3 6 6
RBM19 WILD-TYPE 106 93 86 180
'RBM19 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00115 (Fisher's exact test), Q value = 0.027

Table S7274.  Gene #667: 'RBM19 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
RBM19 MUTATED 5 4 5 0 1 0 6
RBM19 WILD-TYPE 55 46 44 40 62 125 93

Figure S2114.  Get High-res Image Gene #667: 'RBM19 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'RBM19 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.43 (Fisher's exact test), Q value = 0.76

Table S7275.  Gene #667: 'RBM19 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
RBM19 MUTATED 8 4 1 7
RBM19 WILD-TYPE 122 74 67 189
'RBM19 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.235 (Fisher's exact test), Q value = 0.56

Table S7276.  Gene #667: 'RBM19 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
RBM19 MUTATED 3 5 0 2 6 1 1 1 1
RBM19 WILD-TYPE 37 57 28 78 63 47 42 27 73
'RBM19 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0797 (Fisher's exact test), Q value = 0.3

Table S7277.  Gene #667: 'RBM19 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
RBM19 MUTATED 3 0 0 2
RBM19 WILD-TYPE 30 31 27 17
'RBM19 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.269 (Fisher's exact test), Q value = 0.59

Table S7278.  Gene #667: 'RBM19 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
RBM19 MUTATED 5 0 0 0
RBM19 WILD-TYPE 49 10 24 22
'MSH4 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.404 (Fisher's exact test), Q value = 0.73

Table S7279.  Gene #668: 'MSH4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
MSH4 MUTATED 1 0 1 2
MSH4 WILD-TYPE 45 58 63 41
'MSH4 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.682 (Fisher's exact test), Q value = 0.96

Table S7280.  Gene #668: 'MSH4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
MSH4 MUTATED 0 2 2
MSH4 WILD-TYPE 51 81 75
'MSH4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.381 (Fisher's exact test), Q value = 0.71

Table S7281.  Gene #668: 'MSH4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
MSH4 MUTATED 8 3 4 0
MSH4 WILD-TYPE 170 180 97 20
'MSH4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.34 (Fisher's exact test), Q value = 0.67

Table S7282.  Gene #668: 'MSH4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
MSH4 MUTATED 6 2 3
MSH4 WILD-TYPE 81 78 97
'MSH4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.659 (Fisher's exact test), Q value = 0.95

Table S7283.  Gene #668: 'MSH4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
MSH4 MUTATED 2 3 5
MSH4 WILD-TYPE 87 157 133
'MSH4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.639 (Fisher's exact test), Q value = 0.93

Table S7284.  Gene #668: 'MSH4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
MSH4 MUTATED 4 5 1
MSH4 WILD-TYPE 178 128 71
'MSH4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.376 (Fisher's exact test), Q value = 0.71

Table S7285.  Gene #668: 'MSH4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
MSH4 MUTATED 1 4 4 6
MSH4 WILD-TYPE 111 92 88 180
'MSH4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.647 (Fisher's exact test), Q value = 0.93

Table S7286.  Gene #668: 'MSH4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
MSH4 MUTATED 1 1 2 1 4 2 4
MSH4 WILD-TYPE 59 49 47 39 59 123 95
'MSH4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.912 (Fisher's exact test), Q value = 1

Table S7287.  Gene #668: 'MSH4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
MSH4 MUTATED 4 3 1 7
MSH4 WILD-TYPE 126 75 67 189
'MSH4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.357 (Fisher's exact test), Q value = 0.69

Table S7288.  Gene #668: 'MSH4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
MSH4 MUTATED 0 3 2 5 1 0 1 0 3
MSH4 WILD-TYPE 40 59 26 75 68 48 42 28 71
'MSH4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.628 (Fisher's exact test), Q value = 0.92

Table S7289.  Gene #668: 'MSH4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
MSH4 MUTATED 0 1 1 1
MSH4 WILD-TYPE 33 30 26 18
'MSH4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0614 (Fisher's exact test), Q value = 0.27

Table S7290.  Gene #668: 'MSH4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
MSH4 MUTATED 0 1 2 0
MSH4 WILD-TYPE 54 9 22 22
'ADAMTS4 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.153 (Fisher's exact test), Q value = 0.44

Table S7291.  Gene #669: 'ADAMTS4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ADAMTS4 MUTATED 0 1 0 2
ADAMTS4 WILD-TYPE 46 57 64 41
'ADAMTS4 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.789 (Fisher's exact test), Q value = 1

Table S7292.  Gene #669: 'ADAMTS4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ADAMTS4 MUTATED 0 2 1
ADAMTS4 WILD-TYPE 51 81 76
'ADAMTS4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00579 (Fisher's exact test), Q value = 0.069

Table S7293.  Gene #669: 'ADAMTS4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ADAMTS4 MUTATED 14 2 2 0
ADAMTS4 WILD-TYPE 164 181 99 20

Figure S2115.  Get High-res Image Gene #669: 'ADAMTS4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ADAMTS4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00268 (Fisher's exact test), Q value = 0.045

Table S7294.  Gene #669: 'ADAMTS4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ADAMTS4 MUTATED 2 1 12
ADAMTS4 WILD-TYPE 85 79 88

Figure S2116.  Get High-res Image Gene #669: 'ADAMTS4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'ADAMTS4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.208 (Fisher's exact test), Q value = 0.51

Table S7295.  Gene #669: 'ADAMTS4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ADAMTS4 MUTATED 1 6 8
ADAMTS4 WILD-TYPE 88 154 130
'ADAMTS4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.262 (Fisher's exact test), Q value = 0.59

Table S7296.  Gene #669: 'ADAMTS4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ADAMTS4 MUTATED 6 8 1
ADAMTS4 WILD-TYPE 176 125 71
'ADAMTS4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0184 (Fisher's exact test), Q value = 0.14

Table S7297.  Gene #669: 'ADAMTS4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ADAMTS4 MUTATED 3 9 3 3
ADAMTS4 WILD-TYPE 109 87 89 183

Figure S2117.  Get High-res Image Gene #669: 'ADAMTS4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'ADAMTS4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 2e-05 (Fisher's exact test), Q value = 0.0017

Table S7298.  Gene #669: 'ADAMTS4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ADAMTS4 MUTATED 2 3 10 0 1 1 1
ADAMTS4 WILD-TYPE 58 47 39 40 62 124 98

Figure S2118.  Get High-res Image Gene #669: 'ADAMTS4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ADAMTS4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 6e-04 (Fisher's exact test), Q value = 0.018

Table S7299.  Gene #669: 'ADAMTS4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ADAMTS4 MUTATED 13 1 0 4
ADAMTS4 WILD-TYPE 117 77 68 192

Figure S2119.  Get High-res Image Gene #669: 'ADAMTS4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'ADAMTS4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.058 (Fisher's exact test), Q value = 0.26

Table S7300.  Gene #669: 'ADAMTS4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ADAMTS4 MUTATED 1 4 3 1 6 2 0 0 1
ADAMTS4 WILD-TYPE 39 58 25 79 63 46 43 28 73
'ADAMTS4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0969 (Fisher's exact test), Q value = 0.34

Table S7301.  Gene #669: 'ADAMTS4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
ADAMTS4 MUTATED 2 0 0 2
ADAMTS4 WILD-TYPE 31 31 27 17
'ADAMTS4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.489 (Fisher's exact test), Q value = 0.82

Table S7302.  Gene #669: 'ADAMTS4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
ADAMTS4 MUTATED 1 0 2 1
ADAMTS4 WILD-TYPE 53 10 22 21
'ASPM MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00175 (Fisher's exact test), Q value = 0.035

Table S7303.  Gene #670: 'ASPM MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ASPM MUTATED 6 2 0 6
ASPM WILD-TYPE 40 56 64 37

Figure S2120.  Get High-res Image Gene #670: 'ASPM MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'ASPM MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0017 (Fisher's exact test), Q value = 0.034

Table S7304.  Gene #670: 'ASPM MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ASPM MUTATED 9 4 1
ASPM WILD-TYPE 42 79 76

Figure S2121.  Get High-res Image Gene #670: 'ASPM MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'ASPM MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S7305.  Gene #670: 'ASPM MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ASPM MUTATED 36 5 4 2
ASPM WILD-TYPE 142 178 97 18

Figure S2122.  Get High-res Image Gene #670: 'ASPM MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ASPM MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.215 (Fisher's exact test), Q value = 0.53

Table S7306.  Gene #670: 'ASPM MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ASPM MUTATED 11 6 16
ASPM WILD-TYPE 76 74 84
'ASPM MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0482 (Fisher's exact test), Q value = 0.23

Table S7307.  Gene #670: 'ASPM MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ASPM MUTATED 4 15 20
ASPM WILD-TYPE 85 145 118

Figure S2123.  Get High-res Image Gene #670: 'ASPM MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'ASPM MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.613 (Fisher's exact test), Q value = 0.91

Table S7308.  Gene #670: 'ASPM MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ASPM MUTATED 19 15 5
ASPM WILD-TYPE 163 118 67
'ASPM MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.321 (Fisher's exact test), Q value = 0.65

Table S7309.  Gene #670: 'ASPM MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ASPM MUTATED 8 12 12 15
ASPM WILD-TYPE 104 84 80 171
'ASPM MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 4e-05 (Fisher's exact test), Q value = 0.0027

Table S7310.  Gene #670: 'ASPM MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ASPM MUTATED 8 3 14 1 6 3 12
ASPM WILD-TYPE 52 47 35 39 57 122 87

Figure S2124.  Get High-res Image Gene #670: 'ASPM MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ASPM MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.544 (Fisher's exact test), Q value = 0.86

Table S7311.  Gene #670: 'ASPM MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ASPM MUTATED 13 10 4 17
ASPM WILD-TYPE 117 68 64 179
'ASPM MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00977 (Fisher's exact test), Q value = 0.094

Table S7312.  Gene #670: 'ASPM MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ASPM MUTATED 2 9 1 6 15 4 4 0 3
ASPM WILD-TYPE 38 53 27 74 54 44 39 28 71

Figure S2125.  Get High-res Image Gene #670: 'ASPM MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'ASPM MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.48 (Fisher's exact test), Q value = 0.81

Table S7313.  Gene #670: 'ASPM MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
ASPM MUTATED 4 2 3 4
ASPM WILD-TYPE 29 29 24 15
'ASPM MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.707 (Fisher's exact test), Q value = 0.98

Table S7314.  Gene #670: 'ASPM MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
ASPM MUTATED 8 1 3 1
ASPM WILD-TYPE 46 9 21 21
'ZNF180 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00271 (Fisher's exact test), Q value = 0.046

Table S7315.  Gene #671: 'ZNF180 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ZNF180 MUTATED 4 0 0 4
ZNF180 WILD-TYPE 42 58 64 39

Figure S2126.  Get High-res Image Gene #671: 'ZNF180 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'ZNF180 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.308 (Fisher's exact test), Q value = 0.64

Table S7316.  Gene #671: 'ZNF180 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ZNF180 MUTATED 4 2 2
ZNF180 WILD-TYPE 47 81 75
'ZNF180 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0244 (Fisher's exact test), Q value = 0.16

Table S7317.  Gene #671: 'ZNF180 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ZNF180 MUTATED 12 2 3 1
ZNF180 WILD-TYPE 166 181 98 19

Figure S2127.  Get High-res Image Gene #671: 'ZNF180 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ZNF180 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.686 (Fisher's exact test), Q value = 0.96

Table S7318.  Gene #671: 'ZNF180 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ZNF180 MUTATED 5 3 3
ZNF180 WILD-TYPE 82 77 97
'ZNF180 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.937 (Fisher's exact test), Q value = 1

Table S7319.  Gene #671: 'ZNF180 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ZNF180 MUTATED 3 6 4
ZNF180 WILD-TYPE 86 154 134
'ZNF180 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.489 (Fisher's exact test), Q value = 0.82

Table S7320.  Gene #671: 'ZNF180 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ZNF180 MUTATED 5 4 4
ZNF180 WILD-TYPE 177 129 68
'ZNF180 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.714 (Fisher's exact test), Q value = 0.98

Table S7321.  Gene #671: 'ZNF180 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ZNF180 MUTATED 3 4 2 9
ZNF180 WILD-TYPE 109 92 90 177
'ZNF180 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.481 (Fisher's exact test), Q value = 0.81

Table S7322.  Gene #671: 'ZNF180 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ZNF180 MUTATED 2 2 1 3 2 2 6
ZNF180 WILD-TYPE 58 48 48 37 61 123 93
'ZNF180 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.639 (Fisher's exact test), Q value = 0.93

Table S7323.  Gene #671: 'ZNF180 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ZNF180 MUTATED 6 1 2 8
ZNF180 WILD-TYPE 124 77 66 188
'ZNF180 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.331 (Fisher's exact test), Q value = 0.66

Table S7324.  Gene #671: 'ZNF180 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ZNF180 MUTATED 3 1 2 3 3 0 3 1 1
ZNF180 WILD-TYPE 37 61 26 77 66 48 40 27 73
'HYDIN MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00235 (Fisher's exact test), Q value = 0.042

Table S7325.  Gene #672: 'HYDIN MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
HYDIN MUTATED 11 3 4 10
HYDIN WILD-TYPE 35 55 60 33

Figure S2128.  Get High-res Image Gene #672: 'HYDIN MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'HYDIN MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00367 (Fisher's exact test), Q value = 0.055

Table S7326.  Gene #672: 'HYDIN MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
HYDIN MUTATED 14 6 8
HYDIN WILD-TYPE 37 77 69

Figure S2129.  Get High-res Image Gene #672: 'HYDIN MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'HYDIN MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S7327.  Gene #672: 'HYDIN MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
HYDIN MUTATED 56 22 10 3
HYDIN WILD-TYPE 122 161 91 17

Figure S2130.  Get High-res Image Gene #672: 'HYDIN MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'HYDIN MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00152 (Fisher's exact test), Q value = 0.032

Table S7328.  Gene #672: 'HYDIN MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
HYDIN MUTATED 14 13 36
HYDIN WILD-TYPE 73 67 64

Figure S2131.  Get High-res Image Gene #672: 'HYDIN MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'HYDIN MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.483 (Fisher's exact test), Q value = 0.81

Table S7329.  Gene #672: 'HYDIN MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
HYDIN MUTATED 18 29 33
HYDIN WILD-TYPE 71 131 105
'HYDIN MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S7330.  Gene #672: 'HYDIN MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
HYDIN MUTATED 38 27 15
HYDIN WILD-TYPE 144 106 57
'HYDIN MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0751 (Fisher's exact test), Q value = 0.29

Table S7331.  Gene #672: 'HYDIN MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
HYDIN MUTATED 18 25 22 28
HYDIN WILD-TYPE 94 71 70 158
'HYDIN MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S7332.  Gene #672: 'HYDIN MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
HYDIN MUTATED 15 14 22 3 8 9 22
HYDIN WILD-TYPE 45 36 27 37 55 116 77

Figure S2132.  Get High-res Image Gene #672: 'HYDIN MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'HYDIN MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0541 (Fisher's exact test), Q value = 0.25

Table S7333.  Gene #672: 'HYDIN MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
HYDIN MUTATED 35 13 8 35
HYDIN WILD-TYPE 95 65 60 161
'HYDIN MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00867 (Fisher's exact test), Q value = 0.087

Table S7334.  Gene #672: 'HYDIN MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
HYDIN MUTATED 10 12 7 9 24 6 10 5 8
HYDIN WILD-TYPE 30 50 21 71 45 42 33 23 66

Figure S2133.  Get High-res Image Gene #672: 'HYDIN MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'HYDIN MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0208 (Fisher's exact test), Q value = 0.15

Table S7335.  Gene #672: 'HYDIN MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
HYDIN MUTATED 6 3 5 9
HYDIN WILD-TYPE 27 28 22 10

Figure S2134.  Get High-res Image Gene #672: 'HYDIN MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'HYDIN MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.423 (Fisher's exact test), Q value = 0.75

Table S7336.  Gene #672: 'HYDIN MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
HYDIN MUTATED 13 0 5 5
HYDIN WILD-TYPE 41 10 19 17
'NCOA3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0611 (Fisher's exact test), Q value = 0.27

Table S7337.  Gene #673: 'NCOA3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
NCOA3 MUTATED 0 1 1 4
NCOA3 WILD-TYPE 46 57 63 39
'NCOA3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.244 (Fisher's exact test), Q value = 0.57

Table S7338.  Gene #673: 'NCOA3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
NCOA3 MUTATED 3 1 2
NCOA3 WILD-TYPE 48 82 75
'NCOA3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.201 (Fisher's exact test), Q value = 0.51

Table S7339.  Gene #673: 'NCOA3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
NCOA3 MUTATED 10 4 2 1
NCOA3 WILD-TYPE 168 179 99 19
'NCOA3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.921 (Fisher's exact test), Q value = 1

Table S7340.  Gene #673: 'NCOA3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
NCOA3 MUTATED 4 3 3
NCOA3 WILD-TYPE 83 77 97
'NCOA3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.878 (Fisher's exact test), Q value = 1

Table S7341.  Gene #673: 'NCOA3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
NCOA3 MUTATED 2 6 5
NCOA3 WILD-TYPE 87 154 133
'NCOA3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.366 (Fisher's exact test), Q value = 0.7

Table S7342.  Gene #673: 'NCOA3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
NCOA3 MUTATED 5 7 1
NCOA3 WILD-TYPE 177 126 71
'NCOA3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.772 (Fisher's exact test), Q value = 1

Table S7343.  Gene #673: 'NCOA3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
NCOA3 MUTATED 5 2 4 6
NCOA3 WILD-TYPE 107 94 88 180
'NCOA3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0609 (Fisher's exact test), Q value = 0.27

Table S7344.  Gene #673: 'NCOA3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
NCOA3 MUTATED 5 0 4 0 2 2 4
NCOA3 WILD-TYPE 55 50 45 40 61 123 95
'NCOA3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.948 (Fisher's exact test), Q value = 1

Table S7345.  Gene #673: 'NCOA3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
NCOA3 MUTATED 5 3 2 6
NCOA3 WILD-TYPE 125 75 66 190
'NCOA3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.144 (Fisher's exact test), Q value = 0.42

Table S7346.  Gene #673: 'NCOA3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
NCOA3 MUTATED 0 4 1 2 5 1 1 2 0
NCOA3 WILD-TYPE 40 58 27 78 64 47 42 26 74
'ARMCX5 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.123 (Fisher's exact test), Q value = 0.39

Table S7347.  Gene #674: 'ARMCX5 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ARMCX5 MUTATED 2 0 0 1
ARMCX5 WILD-TYPE 44 58 64 42
'ARMCX5 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0133 (Fisher's exact test), Q value = 0.11

Table S7348.  Gene #674: 'ARMCX5 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ARMCX5 MUTATED 3 0 0
ARMCX5 WILD-TYPE 48 83 77

Figure S2135.  Get High-res Image Gene #674: 'ARMCX5 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'ARMCX5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.201 (Fisher's exact test), Q value = 0.51

Table S7349.  Gene #674: 'ARMCX5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ARMCX5 MUTATED 4 1 1 1
ARMCX5 WILD-TYPE 174 182 100 19
'ARMCX5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.323 (Fisher's exact test), Q value = 0.65

Table S7350.  Gene #674: 'ARMCX5 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ARMCX5 MUTATED 0 1 3
ARMCX5 WILD-TYPE 87 79 97
'ARMCX5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.618 (Fisher's exact test), Q value = 0.92

Table S7351.  Gene #674: 'ARMCX5 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ARMCX5 MUTATED 1 2 4
ARMCX5 WILD-TYPE 88 158 134
'ARMCX5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.483 (Fisher's exact test), Q value = 0.81

Table S7352.  Gene #674: 'ARMCX5 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ARMCX5 MUTATED 4 1 2
ARMCX5 WILD-TYPE 178 132 70
'ARMCX5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.952 (Fisher's exact test), Q value = 1

Table S7353.  Gene #674: 'ARMCX5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ARMCX5 MUTATED 1 2 1 3
ARMCX5 WILD-TYPE 111 94 91 183
'ARMCX5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0494 (Fisher's exact test), Q value = 0.24

Table S7354.  Gene #674: 'ARMCX5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ARMCX5 MUTATED 0 2 2 0 0 0 3
ARMCX5 WILD-TYPE 60 48 47 40 63 125 96

Figure S2136.  Get High-res Image Gene #674: 'ARMCX5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ARMCX5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.503 (Fisher's exact test), Q value = 0.83

Table S7355.  Gene #674: 'ARMCX5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ARMCX5 MUTATED 3 0 0 4
ARMCX5 WILD-TYPE 127 78 68 192
'ARMCX5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0449 (Fisher's exact test), Q value = 0.23

Table S7356.  Gene #674: 'ARMCX5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ARMCX5 MUTATED 1 0 1 0 4 1 0 0 0
ARMCX5 WILD-TYPE 39 62 27 80 65 47 43 28 74

Figure S2137.  Get High-res Image Gene #674: 'ARMCX5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'YLPM1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.067 (Fisher's exact test), Q value = 0.28

Table S7357.  Gene #675: 'YLPM1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
YLPM1 MUTATED 2 1 1 5
YLPM1 WILD-TYPE 44 57 63 38
'YLPM1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.42 (Fisher's exact test), Q value = 0.75

Table S7358.  Gene #675: 'YLPM1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
YLPM1 MUTATED 2 2 5
YLPM1 WILD-TYPE 49 81 72
'YLPM1 MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S7359.  Gene #675: 'YLPM1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
YLPM1 MUTATED 21 1 1 0
YLPM1 WILD-TYPE 157 182 100 20

Figure S2138.  Get High-res Image Gene #675: 'YLPM1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'YLPM1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0128 (Fisher's exact test), Q value = 0.11

Table S7360.  Gene #675: 'YLPM1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
YLPM1 MUTATED 5 0 9
YLPM1 WILD-TYPE 82 80 91

Figure S2139.  Get High-res Image Gene #675: 'YLPM1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'YLPM1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.642 (Fisher's exact test), Q value = 0.93

Table S7361.  Gene #675: 'YLPM1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
YLPM1 MUTATED 4 6 8
YLPM1 WILD-TYPE 85 154 130
'YLPM1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.856 (Fisher's exact test), Q value = 1

Table S7362.  Gene #675: 'YLPM1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
YLPM1 MUTATED 10 5 3
YLPM1 WILD-TYPE 172 128 69
'YLPM1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0048 (Fisher's exact test), Q value = 0.063

Table S7363.  Gene #675: 'YLPM1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
YLPM1 MUTATED 0 9 5 10
YLPM1 WILD-TYPE 112 87 87 176

Figure S2140.  Get High-res Image Gene #675: 'YLPM1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'YLPM1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 3e-05 (Fisher's exact test), Q value = 0.0022

Table S7364.  Gene #675: 'YLPM1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
YLPM1 MUTATED 1 1 11 1 1 2 7
YLPM1 WILD-TYPE 59 49 38 39 62 123 92

Figure S2141.  Get High-res Image Gene #675: 'YLPM1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'YLPM1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0544 (Fisher's exact test), Q value = 0.25

Table S7365.  Gene #675: 'YLPM1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
YLPM1 MUTATED 11 3 0 10
YLPM1 WILD-TYPE 119 75 68 186
'YLPM1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0628 (Fisher's exact test), Q value = 0.27

Table S7366.  Gene #675: 'YLPM1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
YLPM1 MUTATED 2 4 2 2 9 0 1 2 2
YLPM1 WILD-TYPE 38 58 26 78 60 48 42 26 72
'YLPM1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.136 (Fisher's exact test), Q value = 0.41

Table S7367.  Gene #675: 'YLPM1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
YLPM1 MUTATED 1 0 0 2
YLPM1 WILD-TYPE 32 31 27 17
'YLPM1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S7368.  Gene #675: 'YLPM1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
YLPM1 MUTATED 2 0 1 0
YLPM1 WILD-TYPE 52 10 23 22
'PLEK MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00681 (Fisher's exact test), Q value = 0.076

Table S7369.  Gene #676: 'PLEK MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
PLEK MUTATED 1 1 0 5
PLEK WILD-TYPE 45 57 64 38

Figure S2142.  Get High-res Image Gene #676: 'PLEK MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'PLEK MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.125 (Fisher's exact test), Q value = 0.39

Table S7370.  Gene #676: 'PLEK MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
PLEK MUTATED 4 2 1
PLEK WILD-TYPE 47 81 76
'PLEK MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0453 (Fisher's exact test), Q value = 0.23

Table S7371.  Gene #676: 'PLEK MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
PLEK MUTATED 10 2 1 0
PLEK WILD-TYPE 168 181 100 20

Figure S2143.  Get High-res Image Gene #676: 'PLEK MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'PLEK MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.634 (Fisher's exact test), Q value = 0.93

Table S7372.  Gene #676: 'PLEK MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
PLEK MUTATED 2 1 4
PLEK WILD-TYPE 85 79 96
'PLEK MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.388 (Fisher's exact test), Q value = 0.71

Table S7373.  Gene #676: 'PLEK MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
PLEK MUTATED 1 4 6
PLEK WILD-TYPE 88 156 132
'PLEK MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.851 (Fisher's exact test), Q value = 1

Table S7374.  Gene #676: 'PLEK MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
PLEK MUTATED 6 4 1
PLEK WILD-TYPE 176 129 71
'PLEK MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.408 (Fisher's exact test), Q value = 0.73

Table S7375.  Gene #676: 'PLEK MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
PLEK MUTATED 1 4 2 7
PLEK WILD-TYPE 111 92 90 179
'PLEK MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0931 (Fisher's exact test), Q value = 0.33

Table S7376.  Gene #676: 'PLEK MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
PLEK MUTATED 0 3 2 1 1 1 6
PLEK WILD-TYPE 60 47 47 39 62 124 93
'PLEK MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.214 (Fisher's exact test), Q value = 0.52

Table S7377.  Gene #676: 'PLEK MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
PLEK MUTATED 3 1 0 9
PLEK WILD-TYPE 127 77 68 187
'PLEK MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.188 (Fisher's exact test), Q value = 0.49

Table S7378.  Gene #676: 'PLEK MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
PLEK MUTATED 0 2 3 1 4 1 0 0 2
PLEK WILD-TYPE 40 60 25 79 65 47 43 28 72
'MST4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.869 (Fisher's exact test), Q value = 1

Table S7379.  Gene #677: 'MST4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
MST4 MUTATED 4 3 1 0
MST4 WILD-TYPE 174 180 100 20
'MST4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.233 (Fisher's exact test), Q value = 0.55

Table S7380.  Gene #677: 'MST4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
MST4 MUTATED 1 1 5
MST4 WILD-TYPE 86 79 95
'MST4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.873 (Fisher's exact test), Q value = 1

Table S7381.  Gene #677: 'MST4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
MST4 MUTATED 1 2 3
MST4 WILD-TYPE 88 158 135
'MST4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.115 (Fisher's exact test), Q value = 0.38

Table S7382.  Gene #677: 'MST4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
MST4 MUTATED 4 0 2
MST4 WILD-TYPE 178 133 70
'MST4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.101 (Fisher's exact test), Q value = 0.35

Table S7383.  Gene #677: 'MST4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
MST4 MUTATED 1 4 2 1
MST4 WILD-TYPE 111 92 90 185
'MST4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00976 (Fisher's exact test), Q value = 0.094

Table S7384.  Gene #677: 'MST4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
MST4 MUTATED 0 3 3 0 1 0 1
MST4 WILD-TYPE 60 47 46 40 62 125 98

Figure S2144.  Get High-res Image Gene #677: 'MST4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'MST4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00446 (Fisher's exact test), Q value = 0.061

Table S7385.  Gene #677: 'MST4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
MST4 MUTATED 6 1 0 0
MST4 WILD-TYPE 124 77 68 196

Figure S2145.  Get High-res Image Gene #677: 'MST4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'MST4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.643 (Fisher's exact test), Q value = 0.93

Table S7386.  Gene #677: 'MST4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
MST4 MUTATED 1 2 1 1 1 0 1 0 0
MST4 WILD-TYPE 39 60 27 79 68 48 42 28 74
'MYL1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.146 (Fisher's exact test), Q value = 0.43

Table S7387.  Gene #678: 'MYL1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
MYL1 MUTATED 1 5 1 1
MYL1 WILD-TYPE 177 178 100 19
'MYL1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.267 (Fisher's exact test), Q value = 0.59

Table S7388.  Gene #678: 'MYL1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
MYL1 MUTATED 2 4 1
MYL1 WILD-TYPE 85 76 99
'MYL1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.875 (Fisher's exact test), Q value = 1

Table S7389.  Gene #678: 'MYL1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
MYL1 MUTATED 1 2 3
MYL1 WILD-TYPE 88 158 135
'MYL1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.413 (Fisher's exact test), Q value = 0.74

Table S7390.  Gene #678: 'MYL1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
MYL1 MUTATED 3 1 2
MYL1 WILD-TYPE 179 132 70
'MYL1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.068 (Fisher's exact test), Q value = 0.28

Table S7391.  Gene #678: 'MYL1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
MYL1 MUTATED 5 1 1 1
MYL1 WILD-TYPE 107 95 91 185
'MYL1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.154 (Fisher's exact test), Q value = 0.44

Table S7392.  Gene #678: 'MYL1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
MYL1 MUTATED 3 1 1 1 1 0 1
MYL1 WILD-TYPE 57 49 48 39 62 125 98
'MYL1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0686 (Fisher's exact test), Q value = 0.28

Table S7393.  Gene #678: 'MYL1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
MYL1 MUTATED 5 2 0 1
MYL1 WILD-TYPE 125 76 68 195
'MYL1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.764 (Fisher's exact test), Q value = 1

Table S7394.  Gene #678: 'MYL1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
MYL1 MUTATED 1 2 1 2 0 1 0 0 1
MYL1 WILD-TYPE 39 60 27 78 69 47 43 28 73
'ANKHD1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0491 (Fisher's exact test), Q value = 0.24

Table S7395.  Gene #679: 'ANKHD1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ANKHD1 MUTATED 3 2 0 4
ANKHD1 WILD-TYPE 43 56 64 39

Figure S2146.  Get High-res Image Gene #679: 'ANKHD1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'ANKHD1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.69 (Fisher's exact test), Q value = 0.97

Table S7396.  Gene #679: 'ANKHD1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ANKHD1 MUTATED 3 4 2
ANKHD1 WILD-TYPE 48 79 75
'ANKHD1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00061 (Fisher's exact test), Q value = 0.018

Table S7397.  Gene #679: 'ANKHD1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ANKHD1 MUTATED 24 8 2 0
ANKHD1 WILD-TYPE 154 175 99 20

Figure S2147.  Get High-res Image Gene #679: 'ANKHD1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ANKHD1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.253 (Fisher's exact test), Q value = 0.58

Table S7398.  Gene #679: 'ANKHD1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ANKHD1 MUTATED 12 6 7
ANKHD1 WILD-TYPE 75 74 93
'ANKHD1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.298 (Fisher's exact test), Q value = 0.63

Table S7399.  Gene #679: 'ANKHD1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ANKHD1 MUTATED 4 11 14
ANKHD1 WILD-TYPE 85 149 124
'ANKHD1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.693 (Fisher's exact test), Q value = 0.97

Table S7400.  Gene #679: 'ANKHD1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ANKHD1 MUTATED 16 9 4
ANKHD1 WILD-TYPE 166 124 68
'ANKHD1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.185 (Fisher's exact test), Q value = 0.49

Table S7401.  Gene #679: 'ANKHD1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ANKHD1 MUTATED 5 9 10 10
ANKHD1 WILD-TYPE 107 87 82 176
'ANKHD1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00086 (Fisher's exact test), Q value = 0.022

Table S7402.  Gene #679: 'ANKHD1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ANKHD1 MUTATED 4 9 8 0 4 3 6
ANKHD1 WILD-TYPE 56 41 41 40 59 122 93

Figure S2148.  Get High-res Image Gene #679: 'ANKHD1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ANKHD1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.289 (Fisher's exact test), Q value = 0.62

Table S7403.  Gene #679: 'ANKHD1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ANKHD1 MUTATED 14 5 3 11
ANKHD1 WILD-TYPE 116 73 65 185
'ANKHD1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.231 (Fisher's exact test), Q value = 0.55

Table S7404.  Gene #679: 'ANKHD1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ANKHD1 MUTATED 3 6 4 6 8 1 2 0 3
ANKHD1 WILD-TYPE 37 56 24 74 61 47 41 28 71
'ANKHD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00498 (Fisher's exact test), Q value = 0.064

Table S7405.  Gene #679: 'ANKHD1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
ANKHD1 MUTATED 3 2 0 6
ANKHD1 WILD-TYPE 30 29 27 13

Figure S2149.  Get High-res Image Gene #679: 'ANKHD1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'ANKHD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.896 (Fisher's exact test), Q value = 1

Table S7406.  Gene #679: 'ANKHD1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
ANKHD1 MUTATED 6 0 3 2
ANKHD1 WILD-TYPE 48 10 21 20
'CEPT1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0925 (Fisher's exact test), Q value = 0.33

Table S7407.  Gene #680: 'CEPT1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
CEPT1 MUTATED 5 0 1 0
CEPT1 WILD-TYPE 173 183 100 20
'CEPT1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.329 (Fisher's exact test), Q value = 0.66

Table S7408.  Gene #680: 'CEPT1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
CEPT1 MUTATED 3 0 2
CEPT1 WILD-TYPE 84 80 98
'CEPT1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.138 (Fisher's exact test), Q value = 0.41

Table S7409.  Gene #680: 'CEPT1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
CEPT1 MUTATED 0 1 4
CEPT1 WILD-TYPE 89 159 134
'CEPT1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.507 (Fisher's exact test), Q value = 0.83

Table S7410.  Gene #680: 'CEPT1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
CEPT1 MUTATED 4 1 0
CEPT1 WILD-TYPE 178 132 72
'CEPT1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.282 (Fisher's exact test), Q value = 0.61

Table S7411.  Gene #680: 'CEPT1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
CEPT1 MUTATED 1 1 3 1
CEPT1 WILD-TYPE 111 95 89 185
'CEPT1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0562 (Fisher's exact test), Q value = 0.26

Table S7412.  Gene #680: 'CEPT1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
CEPT1 MUTATED 1 0 3 0 1 0 1
CEPT1 WILD-TYPE 59 50 46 40 62 125 98
'CEPT1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.674 (Fisher's exact test), Q value = 0.96

Table S7413.  Gene #680: 'CEPT1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
CEPT1 MUTATED 1 2 1 2
CEPT1 WILD-TYPE 129 76 67 194
'CEPT1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.139 (Fisher's exact test), Q value = 0.42

Table S7414.  Gene #680: 'CEPT1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
CEPT1 MUTATED 0 2 0 0 1 0 2 1 0
CEPT1 WILD-TYPE 40 60 28 80 68 48 41 27 74
'CEPT1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0595 (Fisher's exact test), Q value = 0.27

Table S7415.  Gene #680: 'CEPT1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
CEPT1 MUTATED 0 0 1 2
CEPT1 WILD-TYPE 33 31 26 17
'CEPT1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.694 (Fisher's exact test), Q value = 0.97

Table S7416.  Gene #680: 'CEPT1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
CEPT1 MUTATED 1 0 1 1
CEPT1 WILD-TYPE 53 10 23 21
'TNFRSF9 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.167 (Fisher's exact test), Q value = 0.46

Table S7417.  Gene #681: 'TNFRSF9 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
TNFRSF9 MUTATED 7 3 0 0
TNFRSF9 WILD-TYPE 171 180 101 20
'TNFRSF9 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S7418.  Gene #681: 'TNFRSF9 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
TNFRSF9 MUTATED 2 2 3
TNFRSF9 WILD-TYPE 85 78 97
'TNFRSF9 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.42 (Fisher's exact test), Q value = 0.75

Table S7419.  Gene #681: 'TNFRSF9 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
TNFRSF9 MUTATED 4 3 3
TNFRSF9 WILD-TYPE 85 157 135
'TNFRSF9 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.636 (Fisher's exact test), Q value = 0.93

Table S7420.  Gene #681: 'TNFRSF9 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
TNFRSF9 MUTATED 4 5 1
TNFRSF9 WILD-TYPE 178 128 71
'TNFRSF9 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.783 (Fisher's exact test), Q value = 1

Table S7421.  Gene #681: 'TNFRSF9 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
TNFRSF9 MUTATED 2 2 3 3
TNFRSF9 WILD-TYPE 110 94 89 183
'TNFRSF9 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.247 (Fisher's exact test), Q value = 0.57

Table S7422.  Gene #681: 'TNFRSF9 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
TNFRSF9 MUTATED 3 0 2 1 2 1 1
TNFRSF9 WILD-TYPE 57 50 47 39 61 124 98
'TNFRSF9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.701 (Fisher's exact test), Q value = 0.97

Table S7423.  Gene #681: 'TNFRSF9 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
TNFRSF9 MUTATED 3 2 0 5
TNFRSF9 WILD-TYPE 127 76 68 191
'TNFRSF9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.847 (Fisher's exact test), Q value = 1

Table S7424.  Gene #681: 'TNFRSF9 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
TNFRSF9 MUTATED 1 2 0 1 3 1 0 1 1
TNFRSF9 WILD-TYPE 39 60 28 79 66 47 43 27 73
'KDM5C MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00328 (Fisher's exact test), Q value = 0.052

Table S7425.  Gene #682: 'KDM5C MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
KDM5C MUTATED 6 0 1 1
KDM5C WILD-TYPE 40 58 63 42

Figure S2150.  Get High-res Image Gene #682: 'KDM5C MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'KDM5C MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00013 (Fisher's exact test), Q value = 0.0063

Table S7426.  Gene #682: 'KDM5C MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
KDM5C MUTATED 7 0 1
KDM5C WILD-TYPE 44 83 76

Figure S2151.  Get High-res Image Gene #682: 'KDM5C MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'KDM5C MUTATION STATUS' versus 'CN_CNMF'

P value = 0.294 (Fisher's exact test), Q value = 0.62

Table S7427.  Gene #682: 'KDM5C MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
KDM5C MUTATED 12 9 2 0
KDM5C WILD-TYPE 166 174 99 20
'KDM5C MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.843 (Fisher's exact test), Q value = 1

Table S7428.  Gene #682: 'KDM5C MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
KDM5C MUTATED 6 4 5
KDM5C WILD-TYPE 81 76 95
'KDM5C MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.626 (Fisher's exact test), Q value = 0.92

Table S7429.  Gene #682: 'KDM5C MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
KDM5C MUTATED 2 8 7
KDM5C WILD-TYPE 87 152 131
'KDM5C MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.23 (Fisher's exact test), Q value = 0.55

Table S7430.  Gene #682: 'KDM5C MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
KDM5C MUTATED 9 3 5
KDM5C WILD-TYPE 173 130 67
'KDM5C MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.84 (Fisher's exact test), Q value = 1

Table S7431.  Gene #682: 'KDM5C MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
KDM5C MUTATED 4 6 4 9
KDM5C WILD-TYPE 108 90 88 177
'KDM5C MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0462 (Fisher's exact test), Q value = 0.23

Table S7432.  Gene #682: 'KDM5C MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
KDM5C MUTATED 1 4 3 3 3 1 8
KDM5C WILD-TYPE 59 46 46 37 60 124 91

Figure S2152.  Get High-res Image Gene #682: 'KDM5C MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'KDM5C MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.949 (Fisher's exact test), Q value = 1

Table S7433.  Gene #682: 'KDM5C MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
KDM5C MUTATED 6 3 4 10
KDM5C WILD-TYPE 124 75 64 186
'KDM5C MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0741 (Fisher's exact test), Q value = 0.29

Table S7434.  Gene #682: 'KDM5C MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
KDM5C MUTATED 2 4 2 3 8 0 3 0 1
KDM5C WILD-TYPE 38 58 26 77 61 48 40 28 73
'IFIT2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.12 (Fisher's exact test), Q value = 0.39

Table S7435.  Gene #683: 'IFIT2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
IFIT2 MUTATED 2 0 0 1
IFIT2 WILD-TYPE 44 58 64 42
'IFIT2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.183 (Fisher's exact test), Q value = 0.48

Table S7436.  Gene #683: 'IFIT2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
IFIT2 MUTATED 2 0 1
IFIT2 WILD-TYPE 49 83 76
'IFIT2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00474 (Fisher's exact test), Q value = 0.062

Table S7437.  Gene #683: 'IFIT2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
IFIT2 MUTATED 8 0 0 0
IFIT2 WILD-TYPE 170 183 101 20

Figure S2153.  Get High-res Image Gene #683: 'IFIT2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'IFIT2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0762 (Fisher's exact test), Q value = 0.3

Table S7438.  Gene #683: 'IFIT2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
IFIT2 MUTATED 4 0 1
IFIT2 WILD-TYPE 83 80 99
'IFIT2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.614 (Fisher's exact test), Q value = 0.91

Table S7439.  Gene #683: 'IFIT2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
IFIT2 MUTATED 1 2 4
IFIT2 WILD-TYPE 88 158 134
'IFIT2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.487 (Fisher's exact test), Q value = 0.81

Table S7440.  Gene #683: 'IFIT2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
IFIT2 MUTATED 4 1 2
IFIT2 WILD-TYPE 178 132 70
'IFIT2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.272 (Fisher's exact test), Q value = 0.6

Table S7441.  Gene #683: 'IFIT2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
IFIT2 MUTATED 0 2 3 3
IFIT2 WILD-TYPE 112 94 89 183
'IFIT2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0698 (Fisher's exact test), Q value = 0.28

Table S7442.  Gene #683: 'IFIT2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
IFIT2 MUTATED 1 0 3 0 2 0 2
IFIT2 WILD-TYPE 59 50 46 40 61 125 97
'IFIT2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.273 (Fisher's exact test), Q value = 0.6

Table S7443.  Gene #683: 'IFIT2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
IFIT2 MUTATED 1 3 0 4
IFIT2 WILD-TYPE 129 75 68 192
'IFIT2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00925 (Fisher's exact test), Q value = 0.09

Table S7444.  Gene #683: 'IFIT2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
IFIT2 MUTATED 0 3 0 0 5 0 0 0 0
IFIT2 WILD-TYPE 40 59 28 80 64 48 43 28 74

Figure S2154.  Get High-res Image Gene #683: 'IFIT2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'IFIT2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0843 (Fisher's exact test), Q value = 0.31

Table S7445.  Gene #683: 'IFIT2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
IFIT2 MUTATED 0 1 0 2
IFIT2 WILD-TYPE 33 30 27 17
'IFIT2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S7446.  Gene #683: 'IFIT2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
IFIT2 MUTATED 2 0 1 0
IFIT2 WILD-TYPE 52 10 23 22
'NUDCD1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.121 (Fisher's exact test), Q value = 0.39

Table S7447.  Gene #684: 'NUDCD1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
NUDCD1 MUTATED 2 0 0 1
NUDCD1 WILD-TYPE 44 58 64 42
'NUDCD1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.251 (Fisher's exact test), Q value = 0.58

Table S7448.  Gene #684: 'NUDCD1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
NUDCD1 MUTATED 2 1 0
NUDCD1 WILD-TYPE 49 82 77
'NUDCD1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.286 (Fisher's exact test), Q value = 0.61

Table S7449.  Gene #684: 'NUDCD1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
NUDCD1 MUTATED 6 4 0 0
NUDCD1 WILD-TYPE 172 179 101 20
'NUDCD1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S7450.  Gene #684: 'NUDCD1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
NUDCD1 MUTATED 2 2 3
NUDCD1 WILD-TYPE 85 78 97
'NUDCD1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0323 (Fisher's exact test), Q value = 0.18

Table S7451.  Gene #684: 'NUDCD1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
NUDCD1 MUTATED 0 2 7
NUDCD1 WILD-TYPE 89 158 131

Figure S2155.  Get High-res Image Gene #684: 'NUDCD1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'NUDCD1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.188 (Fisher's exact test), Q value = 0.49

Table S7452.  Gene #684: 'NUDCD1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
NUDCD1 MUTATED 7 1 1
NUDCD1 WILD-TYPE 175 132 71
'NUDCD1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.944 (Fisher's exact test), Q value = 1

Table S7453.  Gene #684: 'NUDCD1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
NUDCD1 MUTATED 3 2 2 3
NUDCD1 WILD-TYPE 109 94 90 183
'NUDCD1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.308 (Fisher's exact test), Q value = 0.64

Table S7454.  Gene #684: 'NUDCD1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
NUDCD1 MUTATED 2 0 2 0 3 1 2
NUDCD1 WILD-TYPE 58 50 47 40 60 124 97
'NUDCD1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.78 (Fisher's exact test), Q value = 1

Table S7455.  Gene #684: 'NUDCD1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
NUDCD1 MUTATED 2 2 2 3
NUDCD1 WILD-TYPE 128 76 66 193
'NUDCD1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.15 (Fisher's exact test), Q value = 0.43

Table S7456.  Gene #684: 'NUDCD1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
NUDCD1 MUTATED 0 4 0 1 3 0 1 0 0
NUDCD1 WILD-TYPE 40 58 28 79 66 48 42 28 74
'NUDCD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S7457.  Gene #684: 'NUDCD1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
NUDCD1 MUTATED 1 1 1 1
NUDCD1 WILD-TYPE 32 30 26 18
'NUDCD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.376 (Fisher's exact test), Q value = 0.71

Table S7458.  Gene #684: 'NUDCD1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
NUDCD1 MUTATED 2 1 0 1
NUDCD1 WILD-TYPE 52 9 24 21
'RBPMS MUTATION STATUS' versus 'CN_CNMF'

P value = 0.339 (Fisher's exact test), Q value = 0.67

Table S7459.  Gene #685: 'RBPMS MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
RBPMS MUTATED 3 0 1 0
RBPMS WILD-TYPE 175 183 100 20
'RBPMS MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.514 (Fisher's exact test), Q value = 0.84

Table S7460.  Gene #685: 'RBPMS MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
RBPMS MUTATED 2 0 1
RBPMS WILD-TYPE 85 80 99
'RBPMS MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S7461.  Gene #685: 'RBPMS MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
RBPMS MUTATED 1 2 1
RBPMS WILD-TYPE 88 158 137
'RBPMS MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.529 (Fisher's exact test), Q value = 0.85

Table S7462.  Gene #685: 'RBPMS MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
RBPMS MUTATED 1 2 1
RBPMS WILD-TYPE 181 131 71
'RBPMS MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.761 (Fisher's exact test), Q value = 1

Table S7463.  Gene #685: 'RBPMS MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
RBPMS MUTATED 0 1 1 2
RBPMS WILD-TYPE 112 95 91 184
'RBPMS MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.392 (Fisher's exact test), Q value = 0.72

Table S7464.  Gene #685: 'RBPMS MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
RBPMS MUTATED 1 0 0 1 1 0 1
RBPMS WILD-TYPE 59 50 49 39 62 125 98
'RBPMS MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S7465.  Gene #685: 'RBPMS MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
RBPMS MUTATED 1 1 0 2
RBPMS WILD-TYPE 129 77 68 194
'RBPMS MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.861 (Fisher's exact test), Q value = 1

Table S7466.  Gene #685: 'RBPMS MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
RBPMS MUTATED 1 1 0 0 1 0 0 0 1
RBPMS WILD-TYPE 39 61 28 80 68 48 43 28 73
'ZNF197 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.309 (Fisher's exact test), Q value = 0.64

Table S7467.  Gene #686: 'ZNF197 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ZNF197 MUTATED 1 1 0 2
ZNF197 WILD-TYPE 45 57 64 41
'ZNF197 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.833 (Fisher's exact test), Q value = 1

Table S7468.  Gene #686: 'ZNF197 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ZNF197 MUTATED 1 1 2
ZNF197 WILD-TYPE 50 82 75
'ZNF197 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0161 (Fisher's exact test), Q value = 0.13

Table S7469.  Gene #686: 'ZNF197 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ZNF197 MUTATED 10 1 1 0
ZNF197 WILD-TYPE 168 182 100 20

Figure S2156.  Get High-res Image Gene #686: 'ZNF197 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ZNF197 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.144 (Fisher's exact test), Q value = 0.42

Table S7470.  Gene #686: 'ZNF197 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ZNF197 MUTATED 4 0 4
ZNF197 WILD-TYPE 83 80 96
'ZNF197 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S7471.  Gene #686: 'ZNF197 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ZNF197 MUTATED 2 3 3
ZNF197 WILD-TYPE 87 157 135
'ZNF197 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.721 (Fisher's exact test), Q value = 0.99

Table S7472.  Gene #686: 'ZNF197 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ZNF197 MUTATED 3 3 2
ZNF197 WILD-TYPE 179 130 70
'ZNF197 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.144 (Fisher's exact test), Q value = 0.42

Table S7473.  Gene #686: 'ZNF197 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ZNF197 MUTATED 0 4 3 5
ZNF197 WILD-TYPE 112 92 89 181
'ZNF197 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0532 (Fisher's exact test), Q value = 0.25

Table S7474.  Gene #686: 'ZNF197 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ZNF197 MUTATED 1 1 5 0 1 1 3
ZNF197 WILD-TYPE 59 49 44 40 62 124 96
'ZNF197 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.599 (Fisher's exact test), Q value = 0.9

Table S7475.  Gene #686: 'ZNF197 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ZNF197 MUTATED 4 2 0 6
ZNF197 WILD-TYPE 126 76 68 190
'ZNF197 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00355 (Fisher's exact test), Q value = 0.054

Table S7476.  Gene #686: 'ZNF197 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ZNF197 MUTATED 1 1 3 0 6 0 0 0 1
ZNF197 WILD-TYPE 39 61 25 80 63 48 43 28 73

Figure S2157.  Get High-res Image Gene #686: 'ZNF197 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'ZNF197 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.705 (Fisher's exact test), Q value = 0.98

Table S7477.  Gene #686: 'ZNF197 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
ZNF197 MUTATED 2 1 0 0
ZNF197 WILD-TYPE 31 30 27 19
'ZNF197 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.31 (Fisher's exact test), Q value = 0.64

Table S7478.  Gene #686: 'ZNF197 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
ZNF197 MUTATED 1 1 1 0
ZNF197 WILD-TYPE 53 9 23 22
'DOCK5 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00018 (Fisher's exact test), Q value = 0.0078

Table S7479.  Gene #687: 'DOCK5 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
DOCK5 MUTATED 5 0 0 6
DOCK5 WILD-TYPE 41 58 64 37

Figure S2158.  Get High-res Image Gene #687: 'DOCK5 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'DOCK5 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00013 (Fisher's exact test), Q value = 0.0063

Table S7480.  Gene #687: 'DOCK5 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
DOCK5 MUTATED 9 1 1
DOCK5 WILD-TYPE 42 82 76

Figure S2159.  Get High-res Image Gene #687: 'DOCK5 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'DOCK5 MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S7481.  Gene #687: 'DOCK5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
DOCK5 MUTATED 26 3 0 0
DOCK5 WILD-TYPE 152 180 101 20

Figure S2160.  Get High-res Image Gene #687: 'DOCK5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'DOCK5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.177 (Fisher's exact test), Q value = 0.48

Table S7482.  Gene #687: 'DOCK5 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
DOCK5 MUTATED 8 2 8
DOCK5 WILD-TYPE 79 78 92
'DOCK5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.199 (Fisher's exact test), Q value = 0.5

Table S7483.  Gene #687: 'DOCK5 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
DOCK5 MUTATED 4 9 14
DOCK5 WILD-TYPE 85 151 124
'DOCK5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.867 (Fisher's exact test), Q value = 1

Table S7484.  Gene #687: 'DOCK5 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
DOCK5 MUTATED 14 8 5
DOCK5 WILD-TYPE 168 125 67
'DOCK5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.519 (Fisher's exact test), Q value = 0.84

Table S7485.  Gene #687: 'DOCK5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
DOCK5 MUTATED 4 8 6 11
DOCK5 WILD-TYPE 108 88 86 175
'DOCK5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 2e-05 (Fisher's exact test), Q value = 0.0017

Table S7486.  Gene #687: 'DOCK5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
DOCK5 MUTATED 5 4 8 1 1 0 10
DOCK5 WILD-TYPE 55 46 41 39 62 125 89

Figure S2161.  Get High-res Image Gene #687: 'DOCK5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'DOCK5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.211 (Fisher's exact test), Q value = 0.52

Table S7487.  Gene #687: 'DOCK5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
DOCK5 MUTATED 11 3 1 12
DOCK5 WILD-TYPE 119 75 67 184
'DOCK5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.325 (Fisher's exact test), Q value = 0.65

Table S7488.  Gene #687: 'DOCK5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
DOCK5 MUTATED 2 5 3 4 7 2 1 2 1
DOCK5 WILD-TYPE 38 57 25 76 62 46 42 26 73
'DOCK5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00481 (Fisher's exact test), Q value = 0.063

Table S7489.  Gene #687: 'DOCK5 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
DOCK5 MUTATED 2 0 0 4
DOCK5 WILD-TYPE 31 31 27 15

Figure S2162.  Get High-res Image Gene #687: 'DOCK5 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'DOCK5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S7490.  Gene #687: 'DOCK5 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
DOCK5 MUTATED 4 0 1 1
DOCK5 WILD-TYPE 50 10 23 21
'TNRC6C MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00338 (Fisher's exact test), Q value = 0.053

Table S7491.  Gene #688: 'TNRC6C MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
TNRC6C MUTATED 6 1 0 1
TNRC6C WILD-TYPE 40 57 64 42

Figure S2163.  Get High-res Image Gene #688: 'TNRC6C MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'TNRC6C MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0623 (Fisher's exact test), Q value = 0.27

Table S7492.  Gene #688: 'TNRC6C MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
TNRC6C MUTATED 5 2 1
TNRC6C WILD-TYPE 46 81 76
'TNRC6C MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S7493.  Gene #688: 'TNRC6C MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
TNRC6C MUTATED 17 0 1 1
TNRC6C WILD-TYPE 161 183 100 19

Figure S2164.  Get High-res Image Gene #688: 'TNRC6C MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'TNRC6C MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00928 (Fisher's exact test), Q value = 0.091

Table S7494.  Gene #688: 'TNRC6C MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
TNRC6C MUTATED 3 0 9
TNRC6C WILD-TYPE 84 80 91

Figure S2165.  Get High-res Image Gene #688: 'TNRC6C MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'TNRC6C MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.347 (Fisher's exact test), Q value = 0.67

Table S7495.  Gene #688: 'TNRC6C MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
TNRC6C MUTATED 3 5 9
TNRC6C WILD-TYPE 86 155 129
'TNRC6C MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.679 (Fisher's exact test), Q value = 0.96

Table S7496.  Gene #688: 'TNRC6C MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
TNRC6C MUTATED 10 5 2
TNRC6C WILD-TYPE 172 128 70
'TNRC6C MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0209 (Fisher's exact test), Q value = 0.15

Table S7497.  Gene #688: 'TNRC6C MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
TNRC6C MUTATED 0 6 6 8
TNRC6C WILD-TYPE 112 90 86 178

Figure S2166.  Get High-res Image Gene #688: 'TNRC6C MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'TNRC6C MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S7498.  Gene #688: 'TNRC6C MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
TNRC6C MUTATED 1 0 11 0 1 2 5
TNRC6C WILD-TYPE 59 50 38 40 62 123 94

Figure S2167.  Get High-res Image Gene #688: 'TNRC6C MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'TNRC6C MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0672 (Fisher's exact test), Q value = 0.28

Table S7499.  Gene #688: 'TNRC6C MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
TNRC6C MUTATED 8 1 0 11
TNRC6C WILD-TYPE 122 77 68 185
'TNRC6C MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00317 (Fisher's exact test), Q value = 0.05

Table S7500.  Gene #688: 'TNRC6C MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
TNRC6C MUTATED 2 4 0 2 10 0 0 1 1
TNRC6C WILD-TYPE 38 58 28 78 59 48 43 27 73

Figure S2168.  Get High-res Image Gene #688: 'TNRC6C MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'NIPA2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.238 (Fisher's exact test), Q value = 0.56

Table S7501.  Gene #689: 'NIPA2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
NIPA2 MUTATED 3 1 1 0
NIPA2 WILD-TYPE 43 57 63 43
'NIPA2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0452 (Fisher's exact test), Q value = 0.23

Table S7502.  Gene #689: 'NIPA2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
NIPA2 MUTATED 3 0 2
NIPA2 WILD-TYPE 48 83 75

Figure S2169.  Get High-res Image Gene #689: 'NIPA2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'NIPA2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.206 (Fisher's exact test), Q value = 0.51

Table S7503.  Gene #689: 'NIPA2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
NIPA2 MUTATED 6 1 1 0
NIPA2 WILD-TYPE 172 182 100 20
'NIPA2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.111 (Fisher's exact test), Q value = 0.37

Table S7504.  Gene #689: 'NIPA2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
NIPA2 MUTATED 0 0 3
NIPA2 WILD-TYPE 87 80 97
'NIPA2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.829 (Fisher's exact test), Q value = 1

Table S7505.  Gene #689: 'NIPA2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
NIPA2 MUTATED 1 1 2
NIPA2 WILD-TYPE 88 159 136
'NIPA2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.252 (Fisher's exact test), Q value = 0.58

Table S7506.  Gene #689: 'NIPA2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
NIPA2 MUTATED 1 1 2
NIPA2 WILD-TYPE 181 132 70
'NIPA2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0905 (Fisher's exact test), Q value = 0.33

Table S7507.  Gene #689: 'NIPA2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
NIPA2 MUTATED 0 3 0 5
NIPA2 WILD-TYPE 112 93 92 181
'NIPA2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.255 (Fisher's exact test), Q value = 0.58

Table S7508.  Gene #689: 'NIPA2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
NIPA2 MUTATED 0 0 2 0 0 2 4
NIPA2 WILD-TYPE 60 50 47 40 63 123 95
'NIPA2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.285 (Fisher's exact test), Q value = 0.61

Table S7509.  Gene #689: 'NIPA2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
NIPA2 MUTATED 2 0 0 6
NIPA2 WILD-TYPE 128 78 68 190
'NIPA2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00026 (Fisher's exact test), Q value = 0.0099

Table S7510.  Gene #689: 'NIPA2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
NIPA2 MUTATED 0 0 1 0 7 0 0 0 0
NIPA2 WILD-TYPE 40 62 27 80 62 48 43 28 74

Figure S2170.  Get High-res Image Gene #689: 'NIPA2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'NSUN2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.273 (Fisher's exact test), Q value = 0.6

Table S7511.  Gene #690: 'NSUN2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
NSUN2 MUTATED 2 0 1 0
NSUN2 WILD-TYPE 44 58 63 43
'NSUN2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.256 (Fisher's exact test), Q value = 0.58

Table S7512.  Gene #690: 'NSUN2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
NSUN2 MUTATED 2 1 0
NSUN2 WILD-TYPE 49 82 77
'NSUN2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.74 (Fisher's exact test), Q value = 1

Table S7513.  Gene #690: 'NSUN2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
NSUN2 MUTATED 6 3 3 0
NSUN2 WILD-TYPE 172 180 98 20
'NSUN2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0382 (Fisher's exact test), Q value = 0.2

Table S7514.  Gene #690: 'NSUN2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
NSUN2 MUTATED 6 0 3
NSUN2 WILD-TYPE 81 80 97

Figure S2171.  Get High-res Image Gene #690: 'NSUN2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'NSUN2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0164 (Fisher's exact test), Q value = 0.13

Table S7515.  Gene #690: 'NSUN2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
NSUN2 MUTATED 1 1 8
NSUN2 WILD-TYPE 88 159 130

Figure S2172.  Get High-res Image Gene #690: 'NSUN2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'NSUN2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.101 (Fisher's exact test), Q value = 0.35

Table S7516.  Gene #690: 'NSUN2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
NSUN2 MUTATED 8 2 0
NSUN2 WILD-TYPE 174 131 72
'NSUN2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.183 (Fisher's exact test), Q value = 0.48

Table S7517.  Gene #690: 'NSUN2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
NSUN2 MUTATED 1 5 3 3
NSUN2 WILD-TYPE 111 91 89 183
'NSUN2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0502 (Fisher's exact test), Q value = 0.24

Table S7518.  Gene #690: 'NSUN2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
NSUN2 MUTATED 0 4 3 1 1 1 2
NSUN2 WILD-TYPE 60 46 46 39 62 124 97
'NSUN2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.51 (Fisher's exact test), Q value = 0.83

Table S7519.  Gene #690: 'NSUN2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
NSUN2 MUTATED 4 3 0 5
NSUN2 WILD-TYPE 126 75 68 191
'NSUN2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.542 (Fisher's exact test), Q value = 0.86

Table S7520.  Gene #690: 'NSUN2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
NSUN2 MUTATED 1 3 2 2 1 0 0 1 2
NSUN2 WILD-TYPE 39 59 26 78 68 48 43 27 72
'CYP4X1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.905 (Fisher's exact test), Q value = 1

Table S7521.  Gene #691: 'CYP4X1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
CYP4X1 MUTATED 3 2 1 0
CYP4X1 WILD-TYPE 175 181 100 20
'CYP4X1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.681 (Fisher's exact test), Q value = 0.96

Table S7522.  Gene #691: 'CYP4X1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
CYP4X1 MUTATED 3 1 2
CYP4X1 WILD-TYPE 84 79 98
'CYP4X1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S7523.  Gene #691: 'CYP4X1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
CYP4X1 MUTATED 1 2 2
CYP4X1 WILD-TYPE 88 158 136
'CYP4X1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.169 (Fisher's exact test), Q value = 0.46

Table S7524.  Gene #691: 'CYP4X1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
CYP4X1 MUTATED 3 0 2
CYP4X1 WILD-TYPE 179 133 70
'CYP4X1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0488 (Fisher's exact test), Q value = 0.24

Table S7525.  Gene #691: 'CYP4X1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
CYP4X1 MUTATED 1 3 2 0
CYP4X1 WILD-TYPE 111 93 90 186

Figure S2173.  Get High-res Image Gene #691: 'CYP4X1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'CYP4X1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.117 (Fisher's exact test), Q value = 0.38

Table S7526.  Gene #691: 'CYP4X1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
CYP4X1 MUTATED 1 1 1 1 2 0 0
CYP4X1 WILD-TYPE 59 49 48 39 61 125 99
'CYP4X1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0303 (Fisher's exact test), Q value = 0.18

Table S7527.  Gene #691: 'CYP4X1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
CYP4X1 MUTATED 4 2 0 0
CYP4X1 WILD-TYPE 126 76 68 196

Figure S2174.  Get High-res Image Gene #691: 'CYP4X1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'CYP4X1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0656 (Fisher's exact test), Q value = 0.28

Table S7528.  Gene #691: 'CYP4X1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
CYP4X1 MUTATED 1 2 2 0 1 0 0 0 0
CYP4X1 WILD-TYPE 39 60 26 80 68 48 43 28 74
'CYP4X1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.627 (Fisher's exact test), Q value = 0.92

Table S7529.  Gene #691: 'CYP4X1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
CYP4X1 MUTATED 0 1 1 1
CYP4X1 WILD-TYPE 33 30 26 18
'CYP4X1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.448 (Fisher's exact test), Q value = 0.77

Table S7530.  Gene #691: 'CYP4X1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
CYP4X1 MUTATED 1 0 2 0
CYP4X1 WILD-TYPE 53 10 22 22
'C11ORF57 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.221 (Fisher's exact test), Q value = 0.54

Table S7531.  Gene #692: 'C11ORF57 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
C11ORF57 MUTATED 2 1 0 2
C11ORF57 WILD-TYPE 44 57 64 41
'C11ORF57 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.739 (Fisher's exact test), Q value = 1

Table S7532.  Gene #692: 'C11ORF57 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
C11ORF57 MUTATED 2 2 1
C11ORF57 WILD-TYPE 49 81 76
'C11ORF57 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.168 (Fisher's exact test), Q value = 0.46

Table S7533.  Gene #692: 'C11ORF57 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
C11ORF57 MUTATED 8 2 1 0
C11ORF57 WILD-TYPE 170 181 100 20
'C11ORF57 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.253 (Fisher's exact test), Q value = 0.58

Table S7534.  Gene #692: 'C11ORF57 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
C11ORF57 MUTATED 2 0 4
C11ORF57 WILD-TYPE 85 80 96
'C11ORF57 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.319 (Fisher's exact test), Q value = 0.65

Table S7535.  Gene #692: 'C11ORF57 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
C11ORF57 MUTATED 1 3 6
C11ORF57 WILD-TYPE 88 157 132
'C11ORF57 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.915 (Fisher's exact test), Q value = 1

Table S7536.  Gene #692: 'C11ORF57 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
C11ORF57 MUTATED 5 4 1
C11ORF57 WILD-TYPE 177 129 71
'C11ORF57 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.169 (Fisher's exact test), Q value = 0.46

Table S7537.  Gene #692: 'C11ORF57 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
C11ORF57 MUTATED 0 4 2 5
C11ORF57 WILD-TYPE 112 92 90 181
'C11ORF57 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.181 (Fisher's exact test), Q value = 0.48

Table S7538.  Gene #692: 'C11ORF57 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
C11ORF57 MUTATED 0 1 3 0 2 1 4
C11ORF57 WILD-TYPE 60 49 46 40 61 124 95
'C11ORF57 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.411 (Fisher's exact test), Q value = 0.74

Table S7539.  Gene #692: 'C11ORF57 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
C11ORF57 MUTATED 2 2 0 7
C11ORF57 WILD-TYPE 128 76 68 189
'C11ORF57 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.168 (Fisher's exact test), Q value = 0.46

Table S7540.  Gene #692: 'C11ORF57 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
C11ORF57 MUTATED 0 4 2 1 2 0 0 1 1
C11ORF57 WILD-TYPE 40 58 26 79 67 48 43 27 73
'ZNF439 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0443 (Fisher's exact test), Q value = 0.22

Table S7541.  Gene #693: 'ZNF439 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ZNF439 MUTATED 5 0 0 0
ZNF439 WILD-TYPE 173 183 101 20

Figure S2175.  Get High-res Image Gene #693: 'ZNF439 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ZNF439 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.516 (Fisher's exact test), Q value = 0.84

Table S7542.  Gene #693: 'ZNF439 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ZNF439 MUTATED 2 0 1
ZNF439 WILD-TYPE 85 80 99
'ZNF439 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.633 (Fisher's exact test), Q value = 0.93

Table S7543.  Gene #693: 'ZNF439 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ZNF439 MUTATED 0 3 2
ZNF439 WILD-TYPE 89 157 136
'ZNF439 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.342 (Fisher's exact test), Q value = 0.67

Table S7544.  Gene #693: 'ZNF439 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ZNF439 MUTATED 1 3 1
ZNF439 WILD-TYPE 181 130 71
'ZNF439 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S7545.  Gene #693: 'ZNF439 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ZNF439 MUTATED 1 1 1 2
ZNF439 WILD-TYPE 111 95 91 184
'ZNF439 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.279 (Fisher's exact test), Q value = 0.61

Table S7546.  Gene #693: 'ZNF439 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ZNF439 MUTATED 2 1 0 0 1 0 1
ZNF439 WILD-TYPE 58 49 49 40 62 125 98
'ZNF439 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.19 (Fisher's exact test), Q value = 0.49

Table S7547.  Gene #693: 'ZNF439 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ZNF439 MUTATED 0 2 0 3
ZNF439 WILD-TYPE 130 76 68 193
'ZNF439 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.748 (Fisher's exact test), Q value = 1

Table S7548.  Gene #693: 'ZNF439 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ZNF439 MUTATED 0 1 1 0 1 1 0 0 1
ZNF439 WILD-TYPE 40 61 27 80 68 47 43 28 73
'UBA3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.118 (Fisher's exact test), Q value = 0.38

Table S7549.  Gene #694: 'UBA3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
UBA3 MUTATED 2 0 0 1
UBA3 WILD-TYPE 44 58 64 42
'UBA3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S7550.  Gene #694: 'UBA3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
UBA3 MUTATED 1 1 1
UBA3 WILD-TYPE 50 82 76
'UBA3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.101 (Fisher's exact test), Q value = 0.35

Table S7551.  Gene #694: 'UBA3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
UBA3 MUTATED 5 0 2 0
UBA3 WILD-TYPE 173 183 99 20
'UBA3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.329 (Fisher's exact test), Q value = 0.66

Table S7552.  Gene #694: 'UBA3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
UBA3 MUTATED 3 0 2
UBA3 WILD-TYPE 84 80 98
'UBA3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.581 (Fisher's exact test), Q value = 0.89

Table S7553.  Gene #694: 'UBA3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
UBA3 MUTATED 1 4 1
UBA3 WILD-TYPE 88 156 137
'UBA3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0889 (Fisher's exact test), Q value = 0.32

Table S7554.  Gene #694: 'UBA3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
UBA3 MUTATED 1 2 3
UBA3 WILD-TYPE 181 131 69
'UBA3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.441 (Fisher's exact test), Q value = 0.77

Table S7555.  Gene #694: 'UBA3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
UBA3 MUTATED 0 1 2 4
UBA3 WILD-TYPE 112 95 90 182
'UBA3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.788 (Fisher's exact test), Q value = 1

Table S7556.  Gene #694: 'UBA3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
UBA3 MUTATED 1 1 0 0 2 1 2
UBA3 WILD-TYPE 59 49 49 40 61 124 97
'UBA3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.903 (Fisher's exact test), Q value = 1

Table S7557.  Gene #694: 'UBA3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
UBA3 MUTATED 2 1 0 4
UBA3 WILD-TYPE 128 77 68 192
'UBA3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.49 (Fisher's exact test), Q value = 0.82

Table S7558.  Gene #694: 'UBA3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
UBA3 MUTATED 2 0 1 2 1 0 0 0 1
UBA3 WILD-TYPE 38 62 27 78 68 48 43 28 73
'KIAA0564 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00115 (Fisher's exact test), Q value = 0.027

Table S7559.  Gene #695: 'KIAA0564 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
KIAA0564 MUTATED 3 0 0 5
KIAA0564 WILD-TYPE 43 58 64 38

Figure S2176.  Get High-res Image Gene #695: 'KIAA0564 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'KIAA0564 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.308 (Fisher's exact test), Q value = 0.64

Table S7560.  Gene #695: 'KIAA0564 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
KIAA0564 MUTATED 4 2 2
KIAA0564 WILD-TYPE 47 81 75
'KIAA0564 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00012 (Fisher's exact test), Q value = 0.0059

Table S7561.  Gene #695: 'KIAA0564 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
KIAA0564 MUTATED 20 2 3 0
KIAA0564 WILD-TYPE 158 181 98 20

Figure S2177.  Get High-res Image Gene #695: 'KIAA0564 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'KIAA0564 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.122 (Fisher's exact test), Q value = 0.39

Table S7562.  Gene #695: 'KIAA0564 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
KIAA0564 MUTATED 5 2 10
KIAA0564 WILD-TYPE 82 78 90
'KIAA0564 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0322 (Fisher's exact test), Q value = 0.18

Table S7563.  Gene #695: 'KIAA0564 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
KIAA0564 MUTATED 2 7 14
KIAA0564 WILD-TYPE 87 153 124

Figure S2178.  Get High-res Image Gene #695: 'KIAA0564 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'KIAA0564 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.107 (Fisher's exact test), Q value = 0.36

Table S7564.  Gene #695: 'KIAA0564 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
KIAA0564 MUTATED 15 7 1
KIAA0564 WILD-TYPE 167 126 71
'KIAA0564 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00653 (Fisher's exact test), Q value = 0.074

Table S7565.  Gene #695: 'KIAA0564 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
KIAA0564 MUTATED 1 10 7 7
KIAA0564 WILD-TYPE 111 86 85 179

Figure S2179.  Get High-res Image Gene #695: 'KIAA0564 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'KIAA0564 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00117 (Fisher's exact test), Q value = 0.027

Table S7566.  Gene #695: 'KIAA0564 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
KIAA0564 MUTATED 3 2 10 1 2 2 5
KIAA0564 WILD-TYPE 57 48 39 39 61 123 94

Figure S2180.  Get High-res Image Gene #695: 'KIAA0564 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'KIAA0564 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.832 (Fisher's exact test), Q value = 1

Table S7567.  Gene #695: 'KIAA0564 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
KIAA0564 MUTATED 6 4 2 12
KIAA0564 WILD-TYPE 124 74 66 184
'KIAA0564 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00579 (Fisher's exact test), Q value = 0.069

Table S7568.  Gene #695: 'KIAA0564 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
KIAA0564 MUTATED 2 3 2 4 11 0 1 0 1
KIAA0564 WILD-TYPE 38 59 26 76 58 48 42 28 73

Figure S2181.  Get High-res Image Gene #695: 'KIAA0564 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'KIAA0564 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00094 (Fisher's exact test), Q value = 0.023

Table S7569.  Gene #695: 'KIAA0564 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
KIAA0564 MUTATED 2 0 0 5
KIAA0564 WILD-TYPE 31 31 27 14

Figure S2182.  Get High-res Image Gene #695: 'KIAA0564 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'KIAA0564 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.381 (Fisher's exact test), Q value = 0.71

Table S7570.  Gene #695: 'KIAA0564 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
KIAA0564 MUTATED 4 0 3 0
KIAA0564 WILD-TYPE 50 10 21 22
'ATP8B2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0261 (Fisher's exact test), Q value = 0.16

Table S7571.  Gene #696: 'ATP8B2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ATP8B2 MUTATED 3 0 0 2
ATP8B2 WILD-TYPE 43 58 64 41

Figure S2183.  Get High-res Image Gene #696: 'ATP8B2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'ATP8B2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.253 (Fisher's exact test), Q value = 0.58

Table S7572.  Gene #696: 'ATP8B2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ATP8B2 MUTATED 3 1 1
ATP8B2 WILD-TYPE 48 82 76
'ATP8B2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00157 (Fisher's exact test), Q value = 0.033

Table S7573.  Gene #696: 'ATP8B2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ATP8B2 MUTATED 15 2 1 0
ATP8B2 WILD-TYPE 163 181 100 20

Figure S2184.  Get High-res Image Gene #696: 'ATP8B2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ATP8B2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.246 (Fisher's exact test), Q value = 0.57

Table S7574.  Gene #696: 'ATP8B2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ATP8B2 MUTATED 3 2 8
ATP8B2 WILD-TYPE 84 78 92
'ATP8B2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.223 (Fisher's exact test), Q value = 0.54

Table S7575.  Gene #696: 'ATP8B2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ATP8B2 MUTATED 1 9 6
ATP8B2 WILD-TYPE 88 151 132
'ATP8B2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0873 (Fisher's exact test), Q value = 0.32

Table S7576.  Gene #696: 'ATP8B2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ATP8B2 MUTATED 8 8 0
ATP8B2 WILD-TYPE 174 125 72
'ATP8B2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.735 (Fisher's exact test), Q value = 1

Table S7577.  Gene #696: 'ATP8B2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ATP8B2 MUTATED 3 5 4 6
ATP8B2 WILD-TYPE 109 91 88 180
'ATP8B2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0257 (Fisher's exact test), Q value = 0.16

Table S7578.  Gene #696: 'ATP8B2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ATP8B2 MUTATED 3 1 6 1 1 1 5
ATP8B2 WILD-TYPE 57 49 43 39 62 124 94

Figure S2185.  Get High-res Image Gene #696: 'ATP8B2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ATP8B2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.59 (Fisher's exact test), Q value = 0.89

Table S7579.  Gene #696: 'ATP8B2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ATP8B2 MUTATED 7 2 1 8
ATP8B2 WILD-TYPE 123 76 67 188
'ATP8B2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.056 (Fisher's exact test), Q value = 0.26

Table S7580.  Gene #696: 'ATP8B2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ATP8B2 MUTATED 2 4 1 2 7 1 0 1 0
ATP8B2 WILD-TYPE 38 58 27 78 62 47 43 27 74
'ATP8B2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.27 (Fisher's exact test), Q value = 0.6

Table S7581.  Gene #696: 'ATP8B2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
ATP8B2 MUTATED 1 0 1 2
ATP8B2 WILD-TYPE 32 31 26 17
'ATP8B2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S7582.  Gene #696: 'ATP8B2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
ATP8B2 MUTATED 2 0 1 1
ATP8B2 WILD-TYPE 52 10 23 21
'PNPLA5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00152 (Fisher's exact test), Q value = 0.032

Table S7583.  Gene #697: 'PNPLA5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
PNPLA5 MUTATED 10 0 1 1
PNPLA5 WILD-TYPE 168 183 100 19

Figure S2186.  Get High-res Image Gene #697: 'PNPLA5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'PNPLA5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0781 (Fisher's exact test), Q value = 0.3

Table S7584.  Gene #697: 'PNPLA5 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
PNPLA5 MUTATED 3 0 6
PNPLA5 WILD-TYPE 84 80 94
'PNPLA5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S7585.  Gene #697: 'PNPLA5 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
PNPLA5 MUTATED 2 4 4
PNPLA5 WILD-TYPE 87 156 134
'PNPLA5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.841 (Fisher's exact test), Q value = 1

Table S7586.  Gene #697: 'PNPLA5 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
PNPLA5 MUTATED 4 4 2
PNPLA5 WILD-TYPE 178 129 70
'PNPLA5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0559 (Fisher's exact test), Q value = 0.26

Table S7587.  Gene #697: 'PNPLA5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
PNPLA5 MUTATED 0 4 4 3
PNPLA5 WILD-TYPE 112 92 88 183
'PNPLA5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S7588.  Gene #697: 'PNPLA5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
PNPLA5 MUTATED 0 0 8 0 0 0 3
PNPLA5 WILD-TYPE 60 50 41 40 63 125 96

Figure S2187.  Get High-res Image Gene #697: 'PNPLA5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'PNPLA5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.142 (Fisher's exact test), Q value = 0.42

Table S7589.  Gene #697: 'PNPLA5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
PNPLA5 MUTATED 5 0 0 7
PNPLA5 WILD-TYPE 125 78 68 189
'PNPLA5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.371 (Fisher's exact test), Q value = 0.7

Table S7590.  Gene #697: 'PNPLA5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
PNPLA5 MUTATED 0 2 0 0 4 1 2 1 2
PNPLA5 WILD-TYPE 40 60 28 80 65 47 41 27 72
'VPS13B MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.138 (Fisher's exact test), Q value = 0.41

Table S7591.  Gene #698: 'VPS13B MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
VPS13B MUTATED 4 1 7 5
VPS13B WILD-TYPE 42 57 57 38
'VPS13B MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.258 (Fisher's exact test), Q value = 0.58

Table S7592.  Gene #698: 'VPS13B MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
VPS13B MUTATED 7 5 5
VPS13B WILD-TYPE 44 78 72
'VPS13B MUTATION STATUS' versus 'CN_CNMF'

P value = 4e-04 (Fisher's exact test), Q value = 0.013

Table S7593.  Gene #698: 'VPS13B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
VPS13B MUTATED 37 13 8 1
VPS13B WILD-TYPE 141 170 93 19

Figure S2188.  Get High-res Image Gene #698: 'VPS13B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'VPS13B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0238 (Fisher's exact test), Q value = 0.16

Table S7594.  Gene #698: 'VPS13B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
VPS13B MUTATED 14 6 22
VPS13B WILD-TYPE 73 74 78

Figure S2189.  Get High-res Image Gene #698: 'VPS13B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'VPS13B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0847 (Fisher's exact test), Q value = 0.31

Table S7595.  Gene #698: 'VPS13B MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
VPS13B MUTATED 6 22 23
VPS13B WILD-TYPE 83 138 115
'VPS13B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.405 (Fisher's exact test), Q value = 0.73

Table S7596.  Gene #698: 'VPS13B MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
VPS13B MUTATED 27 18 6
VPS13B WILD-TYPE 155 115 66
'VPS13B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0467 (Fisher's exact test), Q value = 0.23

Table S7597.  Gene #698: 'VPS13B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
VPS13B MUTATED 9 16 17 18
VPS13B WILD-TYPE 103 80 75 168

Figure S2190.  Get High-res Image Gene #698: 'VPS13B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'VPS13B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00037 (Fisher's exact test), Q value = 0.013

Table S7598.  Gene #698: 'VPS13B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
VPS13B MUTATED 4 9 16 4 7 7 13
VPS13B WILD-TYPE 56 41 33 36 56 118 86

Figure S2191.  Get High-res Image Gene #698: 'VPS13B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'VPS13B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.252 (Fisher's exact test), Q value = 0.58

Table S7599.  Gene #698: 'VPS13B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
VPS13B MUTATED 20 11 4 24
VPS13B WILD-TYPE 110 67 64 172
'VPS13B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00694 (Fisher's exact test), Q value = 0.077

Table S7600.  Gene #698: 'VPS13B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
VPS13B MUTATED 6 11 2 8 19 2 3 2 6
VPS13B WILD-TYPE 34 51 26 72 50 46 40 26 68

Figure S2192.  Get High-res Image Gene #698: 'VPS13B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'VPS13B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.358 (Fisher's exact test), Q value = 0.69

Table S7601.  Gene #698: 'VPS13B MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
VPS13B MUTATED 4 4 1 4
VPS13B WILD-TYPE 29 27 26 15
'VPS13B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.121 (Fisher's exact test), Q value = 0.39

Table S7602.  Gene #698: 'VPS13B MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
VPS13B MUTATED 9 2 2 0
VPS13B WILD-TYPE 45 8 22 22
'GPR22 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0121 (Fisher's exact test), Q value = 0.11

Table S7603.  Gene #699: 'GPR22 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
GPR22 MUTATED 8 0 1 0
GPR22 WILD-TYPE 170 183 100 20

Figure S2193.  Get High-res Image Gene #699: 'GPR22 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'GPR22 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.204 (Fisher's exact test), Q value = 0.51

Table S7604.  Gene #699: 'GPR22 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
GPR22 MUTATED 3 0 4
GPR22 WILD-TYPE 84 80 96
'GPR22 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0065 (Fisher's exact test), Q value = 0.074

Table S7605.  Gene #699: 'GPR22 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
GPR22 MUTATED 2 0 7
GPR22 WILD-TYPE 87 160 131

Figure S2194.  Get High-res Image Gene #699: 'GPR22 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'GPR22 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0488 (Fisher's exact test), Q value = 0.24

Table S7606.  Gene #699: 'GPR22 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
GPR22 MUTATED 7 0 2
GPR22 WILD-TYPE 175 133 70

Figure S2195.  Get High-res Image Gene #699: 'GPR22 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'GPR22 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0592 (Fisher's exact test), Q value = 0.27

Table S7607.  Gene #699: 'GPR22 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
GPR22 MUTATED 0 4 3 2
GPR22 WILD-TYPE 112 92 89 184
'GPR22 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0207 (Fisher's exact test), Q value = 0.15

Table S7608.  Gene #699: 'GPR22 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
GPR22 MUTATED 0 1 4 1 1 0 2
GPR22 WILD-TYPE 60 49 45 39 62 125 97

Figure S2196.  Get High-res Image Gene #699: 'GPR22 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'GPR22 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.568 (Fisher's exact test), Q value = 0.88

Table S7609.  Gene #699: 'GPR22 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
GPR22 MUTATED 4 1 1 2
GPR22 WILD-TYPE 126 77 67 194
'GPR22 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0687 (Fisher's exact test), Q value = 0.28

Table S7610.  Gene #699: 'GPR22 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
GPR22 MUTATED 1 4 0 0 1 0 1 1 0
GPR22 WILD-TYPE 39 58 28 80 68 48 42 27 74
'LRP6 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.06 (Fisher's exact test), Q value = 0.27

Table S7611.  Gene #700: 'LRP6 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
LRP6 MUTATED 5 2 1 5
LRP6 WILD-TYPE 41 56 63 38
'LRP6 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0879 (Fisher's exact test), Q value = 0.32

Table S7612.  Gene #700: 'LRP6 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
LRP6 MUTATED 6 2 5
LRP6 WILD-TYPE 45 81 72
'LRP6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0201 (Fisher's exact test), Q value = 0.14

Table S7613.  Gene #700: 'LRP6 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
LRP6 MUTATED 17 4 5 1
LRP6 WILD-TYPE 161 179 96 19

Figure S2197.  Get High-res Image Gene #700: 'LRP6 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'LRP6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.175 (Fisher's exact test), Q value = 0.47

Table S7614.  Gene #700: 'LRP6 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
LRP6 MUTATED 6 1 6
LRP6 WILD-TYPE 81 79 94
'LRP6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.479 (Fisher's exact test), Q value = 0.81

Table S7615.  Gene #700: 'LRP6 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
LRP6 MUTATED 3 9 10
LRP6 WILD-TYPE 86 151 128
'LRP6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.775 (Fisher's exact test), Q value = 1

Table S7616.  Gene #700: 'LRP6 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
LRP6 MUTATED 9 9 4
LRP6 WILD-TYPE 173 124 68
'LRP6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.385 (Fisher's exact test), Q value = 0.71

Table S7617.  Gene #700: 'LRP6 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
LRP6 MUTATED 3 5 5 14
LRP6 WILD-TYPE 109 91 87 172
'LRP6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.663 (Fisher's exact test), Q value = 0.95

Table S7618.  Gene #700: 'LRP6 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
LRP6 MUTATED 4 2 3 2 3 4 9
LRP6 WILD-TYPE 56 48 46 38 60 121 90
'LRP6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.269 (Fisher's exact test), Q value = 0.59

Table S7619.  Gene #700: 'LRP6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
LRP6 MUTATED 7 3 1 15
LRP6 WILD-TYPE 123 75 67 181
'LRP6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0528 (Fisher's exact test), Q value = 0.25

Table S7620.  Gene #700: 'LRP6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
LRP6 MUTATED 1 4 4 3 9 2 1 1 1
LRP6 WILD-TYPE 39 58 24 77 60 46 42 27 73
'LRP6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.665 (Fisher's exact test), Q value = 0.95

Table S7621.  Gene #700: 'LRP6 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
LRP6 MUTATED 1 1 1 2
LRP6 WILD-TYPE 32 30 26 17
'LRP6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.579 (Fisher's exact test), Q value = 0.88

Table S7622.  Gene #700: 'LRP6 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
LRP6 MUTATED 3 0 2 0
LRP6 WILD-TYPE 51 10 22 22
'EFHC1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.408 (Fisher's exact test), Q value = 0.73

Table S7623.  Gene #701: 'EFHC1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
EFHC1 MUTATED 1 0 2 2
EFHC1 WILD-TYPE 45 58 62 41
'EFHC1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S7624.  Gene #701: 'EFHC1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
EFHC1 MUTATED 1 2 2
EFHC1 WILD-TYPE 50 81 75
'EFHC1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.534 (Fisher's exact test), Q value = 0.85

Table S7625.  Gene #701: 'EFHC1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
EFHC1 MUTATED 7 5 1 0
EFHC1 WILD-TYPE 171 178 100 20
'EFHC1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S7626.  Gene #701: 'EFHC1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
EFHC1 MUTATED 3 2 3
EFHC1 WILD-TYPE 84 78 97
'EFHC1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.629 (Fisher's exact test), Q value = 0.93

Table S7627.  Gene #701: 'EFHC1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
EFHC1 MUTATED 1 5 5
EFHC1 WILD-TYPE 88 155 133
'EFHC1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.849 (Fisher's exact test), Q value = 1

Table S7628.  Gene #701: 'EFHC1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
EFHC1 MUTATED 6 4 1
EFHC1 WILD-TYPE 176 129 71
'EFHC1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0455 (Fisher's exact test), Q value = 0.23

Table S7629.  Gene #701: 'EFHC1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
EFHC1 MUTATED 3 0 6 4
EFHC1 WILD-TYPE 109 96 86 182

Figure S2198.  Get High-res Image Gene #701: 'EFHC1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'EFHC1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.415 (Fisher's exact test), Q value = 0.74

Table S7630.  Gene #701: 'EFHC1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
EFHC1 MUTATED 1 1 4 1 2 2 2
EFHC1 WILD-TYPE 59 49 45 39 61 123 97
'EFHC1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.876 (Fisher's exact test), Q value = 1

Table S7631.  Gene #701: 'EFHC1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
EFHC1 MUTATED 3 3 1 6
EFHC1 WILD-TYPE 127 75 67 190
'EFHC1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.135 (Fisher's exact test), Q value = 0.41

Table S7632.  Gene #701: 'EFHC1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
EFHC1 MUTATED 1 4 2 0 3 0 1 1 1
EFHC1 WILD-TYPE 39 58 26 80 66 48 42 27 73
'EFHC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.19 (Fisher's exact test), Q value = 0.49

Table S7633.  Gene #701: 'EFHC1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
EFHC1 MUTATED 0 1 1 2
EFHC1 WILD-TYPE 33 30 26 17
'EFHC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0967 (Fisher's exact test), Q value = 0.34

Table S7634.  Gene #701: 'EFHC1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
EFHC1 MUTATED 2 2 0 0
EFHC1 WILD-TYPE 52 8 24 22
'CDC7 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.122 (Fisher's exact test), Q value = 0.39

Table S7635.  Gene #702: 'CDC7 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
CDC7 MUTATED 2 0 0 1
CDC7 WILD-TYPE 44 58 64 42
'CDC7 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.184 (Fisher's exact test), Q value = 0.48

Table S7636.  Gene #702: 'CDC7 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
CDC7 MUTATED 2 0 1
CDC7 WILD-TYPE 49 83 76
'CDC7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0192 (Fisher's exact test), Q value = 0.14

Table S7637.  Gene #702: 'CDC7 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
CDC7 MUTATED 9 1 1 1
CDC7 WILD-TYPE 169 182 100 19

Figure S2199.  Get High-res Image Gene #702: 'CDC7 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'CDC7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.398 (Fisher's exact test), Q value = 0.72

Table S7638.  Gene #702: 'CDC7 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
CDC7 MUTATED 5 2 2
CDC7 WILD-TYPE 82 78 98
'CDC7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.919 (Fisher's exact test), Q value = 1

Table S7639.  Gene #702: 'CDC7 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
CDC7 MUTATED 2 5 3
CDC7 WILD-TYPE 87 155 135
'CDC7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.529 (Fisher's exact test), Q value = 0.85

Table S7640.  Gene #702: 'CDC7 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
CDC7 MUTATED 5 2 3
CDC7 WILD-TYPE 177 131 69
'CDC7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.547 (Fisher's exact test), Q value = 0.87

Table S7641.  Gene #702: 'CDC7 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
CDC7 MUTATED 3 2 4 3
CDC7 WILD-TYPE 109 94 88 183
'CDC7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0579 (Fisher's exact test), Q value = 0.26

Table S7642.  Gene #702: 'CDC7 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
CDC7 MUTATED 2 2 3 0 3 0 2
CDC7 WILD-TYPE 58 48 46 40 60 125 97
'CDC7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.458 (Fisher's exact test), Q value = 0.79

Table S7643.  Gene #702: 'CDC7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
CDC7 MUTATED 5 3 1 3
CDC7 WILD-TYPE 125 75 67 193
'CDC7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.178 (Fisher's exact test), Q value = 0.48

Table S7644.  Gene #702: 'CDC7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
CDC7 MUTATED 0 5 0 2 3 1 1 0 0
CDC7 WILD-TYPE 40 57 28 78 66 47 42 28 74
'CDC7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.873 (Fisher's exact test), Q value = 1

Table S7645.  Gene #702: 'CDC7 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
CDC7 MUTATED 1 1 0 1
CDC7 WILD-TYPE 32 30 27 18
'CDC7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.193 (Fisher's exact test), Q value = 0.5

Table S7646.  Gene #702: 'CDC7 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
CDC7 MUTATED 1 1 0 1
CDC7 WILD-TYPE 53 9 24 21
'ATP5J2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.638 (Fisher's exact test), Q value = 0.93

Table S7647.  Gene #703: 'ATP5J2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ATP5J2 MUTATED 3 2 0 0
ATP5J2 WILD-TYPE 175 181 101 20
'ATP5J2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.833 (Fisher's exact test), Q value = 1

Table S7648.  Gene #703: 'ATP5J2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ATP5J2 MUTATED 2 1 1
ATP5J2 WILD-TYPE 85 79 99
'ATP5J2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.685 (Fisher's exact test), Q value = 0.96

Table S7649.  Gene #703: 'ATP5J2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ATP5J2 MUTATED 0 2 2
ATP5J2 WILD-TYPE 89 158 136
'ATP5J2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S7650.  Gene #703: 'ATP5J2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ATP5J2 MUTATED 2 1 1
ATP5J2 WILD-TYPE 180 132 71
'ATP5J2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S7651.  Gene #703: 'ATP5J2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ATP5J2 MUTATED 1 1 1 2
ATP5J2 WILD-TYPE 111 95 91 184
'ATP5J2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.955 (Fisher's exact test), Q value = 1

Table S7652.  Gene #703: 'ATP5J2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ATP5J2 MUTATED 1 1 0 0 1 1 1
ATP5J2 WILD-TYPE 59 49 49 40 62 124 98
'ATP5J2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.799 (Fisher's exact test), Q value = 1

Table S7653.  Gene #703: 'ATP5J2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ATP5J2 MUTATED 1 0 1 3
ATP5J2 WILD-TYPE 129 78 67 193
'ATP5J2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S7654.  Gene #703: 'ATP5J2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ATP5J2 MUTATED 0 1 0 1 1 1 0 0 1
ATP5J2 WILD-TYPE 40 61 28 79 68 47 43 28 73
'ADH1B MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.628 (Fisher's exact test), Q value = 0.92

Table S7655.  Gene #704: 'ADH1B MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ADH1B MUTATED 1 1 0 1
ADH1B WILD-TYPE 45 57 64 42
'ADH1B MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S7656.  Gene #704: 'ADH1B MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ADH1B MUTATED 1 1 1
ADH1B WILD-TYPE 50 82 76
'ADH1B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.277 (Fisher's exact test), Q value = 0.6

Table S7657.  Gene #704: 'ADH1B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ADH1B MUTATED 7 2 1 0
ADH1B WILD-TYPE 171 181 100 20
'ADH1B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.094 (Fisher's exact test), Q value = 0.34

Table S7658.  Gene #704: 'ADH1B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ADH1B MUTATED 0 2 5
ADH1B WILD-TYPE 87 78 95
'ADH1B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.795 (Fisher's exact test), Q value = 1

Table S7659.  Gene #704: 'ADH1B MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ADH1B MUTATED 1 4 2
ADH1B WILD-TYPE 88 156 136
'ADH1B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.887 (Fisher's exact test), Q value = 1

Table S7660.  Gene #704: 'ADH1B MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ADH1B MUTATED 3 3 1
ADH1B WILD-TYPE 179 130 71
'ADH1B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.545 (Fisher's exact test), Q value = 0.86

Table S7661.  Gene #704: 'ADH1B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ADH1B MUTATED 3 3 2 2
ADH1B WILD-TYPE 109 93 90 184
'ADH1B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.205 (Fisher's exact test), Q value = 0.51

Table S7662.  Gene #704: 'ADH1B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ADH1B MUTATED 2 1 3 0 0 1 3
ADH1B WILD-TYPE 58 49 46 40 63 124 96
'ADH1B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.235 (Fisher's exact test), Q value = 0.56

Table S7663.  Gene #704: 'ADH1B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ADH1B MUTATED 5 0 2 3
ADH1B WILD-TYPE 125 78 66 193
'ADH1B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0859 (Fisher's exact test), Q value = 0.32

Table S7664.  Gene #704: 'ADH1B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ADH1B MUTATED 0 0 1 1 5 0 2 0 1
ADH1B WILD-TYPE 40 62 27 79 64 48 41 28 73
'PARP12 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.23 (Fisher's exact test), Q value = 0.55

Table S7665.  Gene #705: 'PARP12 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
PARP12 MUTATED 2 1 0 0
PARP12 WILD-TYPE 44 57 64 43
'PARP12 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.251 (Fisher's exact test), Q value = 0.58

Table S7666.  Gene #705: 'PARP12 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
PARP12 MUTATED 2 1 0
PARP12 WILD-TYPE 49 82 77
'PARP12 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.74 (Fisher's exact test), Q value = 1

Table S7667.  Gene #705: 'PARP12 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
PARP12 MUTATED 6 3 2 0
PARP12 WILD-TYPE 172 180 99 20
'PARP12 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.129 (Fisher's exact test), Q value = 0.4

Table S7668.  Gene #705: 'PARP12 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
PARP12 MUTATED 1 1 6
PARP12 WILD-TYPE 86 79 94
'PARP12 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.311 (Fisher's exact test), Q value = 0.64

Table S7669.  Gene #705: 'PARP12 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
PARP12 MUTATED 0 4 4
PARP12 WILD-TYPE 89 156 134
'PARP12 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.253 (Fisher's exact test), Q value = 0.58

Table S7670.  Gene #705: 'PARP12 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
PARP12 MUTATED 2 5 1
PARP12 WILD-TYPE 180 128 71
'PARP12 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.493 (Fisher's exact test), Q value = 0.82

Table S7671.  Gene #705: 'PARP12 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
PARP12 MUTATED 3 4 1 3
PARP12 WILD-TYPE 109 92 91 183
'PARP12 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.463 (Fisher's exact test), Q value = 0.79

Table S7672.  Gene #705: 'PARP12 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
PARP12 MUTATED 1 2 2 2 1 1 2
PARP12 WILD-TYPE 59 48 47 38 62 124 97
'PARP12 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.22 (Fisher's exact test), Q value = 0.53

Table S7673.  Gene #705: 'PARP12 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
PARP12 MUTATED 6 1 0 4
PARP12 WILD-TYPE 124 77 68 192
'PARP12 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.326 (Fisher's exact test), Q value = 0.66

Table S7674.  Gene #705: 'PARP12 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
PARP12 MUTATED 2 0 1 2 3 2 1 0 0
PARP12 WILD-TYPE 38 62 27 78 66 46 42 28 74
'PARP12 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0856 (Fisher's exact test), Q value = 0.32

Table S7675.  Gene #705: 'PARP12 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
PARP12 MUTATED 0 1 0 2
PARP12 WILD-TYPE 33 30 27 17
'PARP12 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.695 (Fisher's exact test), Q value = 0.97

Table S7676.  Gene #705: 'PARP12 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
PARP12 MUTATED 1 0 1 1
PARP12 WILD-TYPE 53 10 23 21
'CD101 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0225 (Fisher's exact test), Q value = 0.15

Table S7677.  Gene #706: 'CD101 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
CD101 MUTATED 2 0 0 3
CD101 WILD-TYPE 44 58 64 40

Figure S2200.  Get High-res Image Gene #706: 'CD101 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'CD101 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S7678.  Gene #706: 'CD101 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
CD101 MUTATED 1 2 2
CD101 WILD-TYPE 50 81 75
'CD101 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0297 (Fisher's exact test), Q value = 0.18

Table S7679.  Gene #706: 'CD101 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
CD101 MUTATED 9 2 0 0
CD101 WILD-TYPE 169 181 101 20

Figure S2201.  Get High-res Image Gene #706: 'CD101 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'CD101 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.14 (Fisher's exact test), Q value = 0.42

Table S7680.  Gene #706: 'CD101 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
CD101 MUTATED 4 0 2
CD101 WILD-TYPE 83 80 98
'CD101 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.306 (Fisher's exact test), Q value = 0.64

Table S7681.  Gene #706: 'CD101 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
CD101 MUTATED 0 3 4
CD101 WILD-TYPE 89 157 134
'CD101 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.363 (Fisher's exact test), Q value = 0.69

Table S7682.  Gene #706: 'CD101 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
CD101 MUTATED 5 2 0
CD101 WILD-TYPE 177 131 72
'CD101 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.161 (Fisher's exact test), Q value = 0.45

Table S7683.  Gene #706: 'CD101 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
CD101 MUTATED 0 2 4 5
CD101 WILD-TYPE 112 94 88 181
'CD101 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.315 (Fisher's exact test), Q value = 0.64

Table S7684.  Gene #706: 'CD101 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
CD101 MUTATED 2 0 3 1 1 1 3
CD101 WILD-TYPE 58 50 46 39 62 124 96
'CD101 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.375 (Fisher's exact test), Q value = 0.7

Table S7685.  Gene #706: 'CD101 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
CD101 MUTATED 2 3 0 6
CD101 WILD-TYPE 128 75 68 190
'CD101 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0685 (Fisher's exact test), Q value = 0.28

Table S7686.  Gene #706: 'CD101 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
CD101 MUTATED 0 4 2 2 3 0 0 0 0
CD101 WILD-TYPE 40 58 26 78 66 48 43 28 74
'CD101 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.781 (Fisher's exact test), Q value = 1

Table S7687.  Gene #706: 'CD101 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
CD101 MUTATED 1 0 1 1
CD101 WILD-TYPE 32 31 26 18
'CD101 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.311 (Fisher's exact test), Q value = 0.64

Table S7688.  Gene #706: 'CD101 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
CD101 MUTATED 1 1 1 0
CD101 WILD-TYPE 53 9 23 22
'PTPRC MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0178 (Fisher's exact test), Q value = 0.13

Table S7689.  Gene #707: 'PTPRC MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
PTPRC MUTATED 4 0 1 4
PTPRC WILD-TYPE 42 58 63 39

Figure S2202.  Get High-res Image Gene #707: 'PTPRC MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'PTPRC MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.057 (Fisher's exact test), Q value = 0.26

Table S7690.  Gene #707: 'PTPRC MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
PTPRC MUTATED 5 1 3
PTPRC WILD-TYPE 46 82 74
'PTPRC MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00077 (Fisher's exact test), Q value = 0.021

Table S7691.  Gene #707: 'PTPRC MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
PTPRC MUTATED 21 5 2 1
PTPRC WILD-TYPE 157 178 99 19

Figure S2203.  Get High-res Image Gene #707: 'PTPRC MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'PTPRC MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0307 (Fisher's exact test), Q value = 0.18

Table S7692.  Gene #707: 'PTPRC MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
PTPRC MUTATED 8 1 10
PTPRC WILD-TYPE 79 79 90

Figure S2204.  Get High-res Image Gene #707: 'PTPRC MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'PTPRC MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0486 (Fisher's exact test), Q value = 0.24

Table S7693.  Gene #707: 'PTPRC MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
PTPRC MUTATED 3 6 14
PTPRC WILD-TYPE 86 154 124

Figure S2205.  Get High-res Image Gene #707: 'PTPRC MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'PTPRC MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.493 (Fisher's exact test), Q value = 0.82

Table S7694.  Gene #707: 'PTPRC MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
PTPRC MUTATED 13 8 2
PTPRC WILD-TYPE 169 125 70
'PTPRC MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0485 (Fisher's exact test), Q value = 0.24

Table S7695.  Gene #707: 'PTPRC MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
PTPRC MUTATED 2 6 10 11
PTPRC WILD-TYPE 110 90 82 175

Figure S2206.  Get High-res Image Gene #707: 'PTPRC MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'PTPRC MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00049 (Fisher's exact test), Q value = 0.015

Table S7696.  Gene #707: 'PTPRC MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
PTPRC MUTATED 1 4 7 0 6 1 10
PTPRC WILD-TYPE 59 46 42 40 57 124 89

Figure S2207.  Get High-res Image Gene #707: 'PTPRC MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'PTPRC MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0743 (Fisher's exact test), Q value = 0.29

Table S7697.  Gene #707: 'PTPRC MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
PTPRC MUTATED 9 6 0 14
PTPRC WILD-TYPE 121 72 68 182
'PTPRC MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0238 (Fisher's exact test), Q value = 0.16

Table S7698.  Gene #707: 'PTPRC MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
PTPRC MUTATED 2 5 3 2 11 1 1 2 2
PTPRC WILD-TYPE 38 57 25 78 58 47 42 26 72

Figure S2208.  Get High-res Image Gene #707: 'PTPRC MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'PTPRC MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0194 (Fisher's exact test), Q value = 0.14

Table S7699.  Gene #707: 'PTPRC MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
PTPRC MUTATED 2 4 0 5
PTPRC WILD-TYPE 31 27 27 14

Figure S2209.  Get High-res Image Gene #707: 'PTPRC MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'PTPRC MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.401 (Fisher's exact test), Q value = 0.73

Table S7700.  Gene #707: 'PTPRC MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
PTPRC MUTATED 8 1 1 1
PTPRC WILD-TYPE 46 9 23 21
'RIF1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0222 (Fisher's exact test), Q value = 0.15

Table S7701.  Gene #708: 'RIF1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
RIF1 MUTATED 3 1 1 6
RIF1 WILD-TYPE 43 57 63 37

Figure S2210.  Get High-res Image Gene #708: 'RIF1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'RIF1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0695 (Fisher's exact test), Q value = 0.28

Table S7702.  Gene #708: 'RIF1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
RIF1 MUTATED 6 2 3
RIF1 WILD-TYPE 45 81 74
'RIF1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0137 (Fisher's exact test), Q value = 0.12

Table S7703.  Gene #708: 'RIF1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
RIF1 MUTATED 24 10 4 1
RIF1 WILD-TYPE 154 173 97 19

Figure S2211.  Get High-res Image Gene #708: 'RIF1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'RIF1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.777 (Fisher's exact test), Q value = 1

Table S7704.  Gene #708: 'RIF1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
RIF1 MUTATED 10 7 12
RIF1 WILD-TYPE 77 73 88
'RIF1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0888 (Fisher's exact test), Q value = 0.32

Table S7705.  Gene #708: 'RIF1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
RIF1 MUTATED 8 10 19
RIF1 WILD-TYPE 81 150 119
'RIF1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.261 (Fisher's exact test), Q value = 0.58

Table S7706.  Gene #708: 'RIF1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
RIF1 MUTATED 22 11 4
RIF1 WILD-TYPE 160 122 68
'RIF1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.379 (Fisher's exact test), Q value = 0.71

Table S7707.  Gene #708: 'RIF1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
RIF1 MUTATED 7 11 10 13
RIF1 WILD-TYPE 105 85 82 173
'RIF1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00329 (Fisher's exact test), Q value = 0.052

Table S7708.  Gene #708: 'RIF1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
RIF1 MUTATED 3 9 9 3 5 3 9
RIF1 WILD-TYPE 57 41 40 37 58 122 90

Figure S2212.  Get High-res Image Gene #708: 'RIF1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'RIF1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0964 (Fisher's exact test), Q value = 0.34

Table S7709.  Gene #708: 'RIF1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
RIF1 MUTATED 17 6 2 15
RIF1 WILD-TYPE 113 72 66 181
'RIF1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0814 (Fisher's exact test), Q value = 0.31

Table S7710.  Gene #708: 'RIF1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
RIF1 MUTATED 6 7 6 5 8 2 2 1 3
RIF1 WILD-TYPE 34 55 22 75 61 46 41 27 71
'RIF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.131 (Fisher's exact test), Q value = 0.4

Table S7711.  Gene #708: 'RIF1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
RIF1 MUTATED 4 1 1 4
RIF1 WILD-TYPE 29 30 26 15
'RIF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.614 (Fisher's exact test), Q value = 0.91

Table S7712.  Gene #708: 'RIF1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
RIF1 MUTATED 7 0 1 2
RIF1 WILD-TYPE 47 10 23 20
'LAS1L MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.272 (Fisher's exact test), Q value = 0.6

Table S7713.  Gene #709: 'LAS1L MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
LAS1L MUTATED 2 0 1 0
LAS1L WILD-TYPE 44 58 63 43
'LAS1L MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.182 (Fisher's exact test), Q value = 0.48

Table S7714.  Gene #709: 'LAS1L MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
LAS1L MUTATED 2 0 1
LAS1L WILD-TYPE 49 83 76
'LAS1L MUTATION STATUS' versus 'CN_CNMF'

P value = 0.413 (Fisher's exact test), Q value = 0.74

Table S7715.  Gene #709: 'LAS1L MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
LAS1L MUTATED 7 3 1 0
LAS1L WILD-TYPE 171 180 100 20
'LAS1L MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0794 (Fisher's exact test), Q value = 0.3

Table S7716.  Gene #709: 'LAS1L MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
LAS1L MUTATED 5 0 3
LAS1L WILD-TYPE 82 80 97
'LAS1L MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.506 (Fisher's exact test), Q value = 0.83

Table S7717.  Gene #709: 'LAS1L MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
LAS1L MUTATED 1 6 3
LAS1L WILD-TYPE 88 154 135
'LAS1L MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.396 (Fisher's exact test), Q value = 0.72

Table S7718.  Gene #709: 'LAS1L MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
LAS1L MUTATED 3 4 3
LAS1L WILD-TYPE 179 129 69
'LAS1L MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.332 (Fisher's exact test), Q value = 0.66

Table S7719.  Gene #709: 'LAS1L MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
LAS1L MUTATED 1 4 3 3
LAS1L WILD-TYPE 111 92 89 183
'LAS1L MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.138 (Fisher's exact test), Q value = 0.41

Table S7720.  Gene #709: 'LAS1L MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
LAS1L MUTATED 1 2 3 2 0 1 2
LAS1L WILD-TYPE 59 48 46 38 63 124 97
'LAS1L MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0301 (Fisher's exact test), Q value = 0.18

Table S7721.  Gene #709: 'LAS1L MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
LAS1L MUTATED 7 0 0 3
LAS1L WILD-TYPE 123 78 68 193

Figure S2213.  Get High-res Image Gene #709: 'LAS1L MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'LAS1L MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0502 (Fisher's exact test), Q value = 0.24

Table S7722.  Gene #709: 'LAS1L MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
LAS1L MUTATED 2 1 1 0 4 0 2 0 0
LAS1L WILD-TYPE 38 61 27 80 65 48 41 28 74
'LAS1L MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0956 (Fisher's exact test), Q value = 0.34

Table S7723.  Gene #709: 'LAS1L MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
LAS1L MUTATED 2 0 0 2
LAS1L WILD-TYPE 31 31 27 17
'LAS1L MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.67 (Fisher's exact test), Q value = 0.95

Table S7724.  Gene #709: 'LAS1L MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
LAS1L MUTATED 2 0 2 0
LAS1L WILD-TYPE 52 10 22 22
'HSD17B11 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.875 (Fisher's exact test), Q value = 1

Table S7725.  Gene #710: 'HSD17B11 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
HSD17B11 MUTATED 1 3 1 0
HSD17B11 WILD-TYPE 177 180 100 20
'HSD17B11 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.738 (Fisher's exact test), Q value = 1

Table S7726.  Gene #710: 'HSD17B11 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
HSD17B11 MUTATED 2 2 1
HSD17B11 WILD-TYPE 85 78 99
'HSD17B11 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0182 (Fisher's exact test), Q value = 0.13

Table S7727.  Gene #710: 'HSD17B11 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
HSD17B11 MUTATED 0 0 4
HSD17B11 WILD-TYPE 89 160 134

Figure S2214.  Get High-res Image Gene #710: 'HSD17B11 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'HSD17B11 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.182 (Fisher's exact test), Q value = 0.48

Table S7728.  Gene #710: 'HSD17B11 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
HSD17B11 MUTATED 4 0 0
HSD17B11 WILD-TYPE 178 133 72
'HSD17B11 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0743 (Fisher's exact test), Q value = 0.29

Table S7729.  Gene #710: 'HSD17B11 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
HSD17B11 MUTATED 3 1 1 0
HSD17B11 WILD-TYPE 109 95 91 186
'HSD17B11 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.173 (Fisher's exact test), Q value = 0.47

Table S7730.  Gene #710: 'HSD17B11 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
HSD17B11 MUTATED 1 1 1 1 1 0 0
HSD17B11 WILD-TYPE 59 49 48 39 62 125 99
'HSD17B11 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.104 (Fisher's exact test), Q value = 0.36

Table S7731.  Gene #710: 'HSD17B11 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
HSD17B11 MUTATED 3 1 1 0
HSD17B11 WILD-TYPE 127 77 67 196
'HSD17B11 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.433 (Fisher's exact test), Q value = 0.76

Table S7732.  Gene #710: 'HSD17B11 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
HSD17B11 MUTATED 1 1 1 0 1 1 0 0 0
HSD17B11 WILD-TYPE 39 61 27 80 68 47 43 28 74
'RHEB MUTATION STATUS' versus 'CN_CNMF'

P value = 0.637 (Fisher's exact test), Q value = 0.93

Table S7733.  Gene #711: 'RHEB MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
RHEB MUTATED 3 2 0 0
RHEB WILD-TYPE 175 181 101 20
'RHEB MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.328 (Fisher's exact test), Q value = 0.66

Table S7734.  Gene #711: 'RHEB MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
RHEB MUTATED 3 0 2
RHEB WILD-TYPE 84 80 98
'RHEB MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S7735.  Gene #711: 'RHEB MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
RHEB MUTATED 1 2 1
RHEB WILD-TYPE 88 158 137
'RHEB MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.326 (Fisher's exact test), Q value = 0.66

Table S7736.  Gene #711: 'RHEB MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
RHEB MUTATED 1 3 0
RHEB WILD-TYPE 181 130 72
'RHEB MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0192 (Fisher's exact test), Q value = 0.14

Table S7737.  Gene #711: 'RHEB MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
RHEB MUTATED 0 3 2 0
RHEB WILD-TYPE 112 93 90 186

Figure S2215.  Get High-res Image Gene #711: 'RHEB MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'RHEB MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0481 (Fisher's exact test), Q value = 0.23

Table S7738.  Gene #711: 'RHEB MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
RHEB MUTATED 0 2 1 1 1 0 0
RHEB WILD-TYPE 60 48 48 39 62 125 99

Figure S2216.  Get High-res Image Gene #711: 'RHEB MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'RHEB MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.407 (Fisher's exact test), Q value = 0.73

Table S7739.  Gene #711: 'RHEB MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
RHEB MUTATED 3 1 0 1
RHEB WILD-TYPE 127 77 68 195
'RHEB MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.993 (Fisher's exact test), Q value = 1

Table S7740.  Gene #711: 'RHEB MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
RHEB MUTATED 0 1 0 1 1 0 1 0 1
RHEB WILD-TYPE 40 61 28 79 68 48 42 28 73
'KIAA0406 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.943 (Fisher's exact test), Q value = 1

Table S7741.  Gene #712: 'KIAA0406 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
KIAA0406 MUTATED 2 1 2 1
KIAA0406 WILD-TYPE 44 57 62 42
'KIAA0406 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.118 (Fisher's exact test), Q value = 0.38

Table S7742.  Gene #712: 'KIAA0406 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
KIAA0406 MUTATED 3 3 0
KIAA0406 WILD-TYPE 48 80 77
'KIAA0406 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.153 (Fisher's exact test), Q value = 0.44

Table S7743.  Gene #712: 'KIAA0406 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
KIAA0406 MUTATED 10 4 1 0
KIAA0406 WILD-TYPE 168 179 100 20
'KIAA0406 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.437 (Fisher's exact test), Q value = 0.76

Table S7744.  Gene #712: 'KIAA0406 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
KIAA0406 MUTATED 3 1 5
KIAA0406 WILD-TYPE 84 79 95
'KIAA0406 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.282 (Fisher's exact test), Q value = 0.61

Table S7745.  Gene #712: 'KIAA0406 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
KIAA0406 MUTATED 4 3 7
KIAA0406 WILD-TYPE 85 157 131
'KIAA0406 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.171 (Fisher's exact test), Q value = 0.47

Table S7746.  Gene #712: 'KIAA0406 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
KIAA0406 MUTATED 10 2 2
KIAA0406 WILD-TYPE 172 131 70
'KIAA0406 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.236 (Fisher's exact test), Q value = 0.56

Table S7747.  Gene #712: 'KIAA0406 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
KIAA0406 MUTATED 1 4 5 5
KIAA0406 WILD-TYPE 111 92 87 181
'KIAA0406 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0137 (Fisher's exact test), Q value = 0.12

Table S7748.  Gene #712: 'KIAA0406 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
KIAA0406 MUTATED 0 0 6 0 3 3 3
KIAA0406 WILD-TYPE 60 50 43 40 60 122 96

Figure S2217.  Get High-res Image Gene #712: 'KIAA0406 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'KIAA0406 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.194 (Fisher's exact test), Q value = 0.5

Table S7749.  Gene #712: 'KIAA0406 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
KIAA0406 MUTATED 5 4 0 4
KIAA0406 WILD-TYPE 125 74 68 192
'KIAA0406 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0133 (Fisher's exact test), Q value = 0.11

Table S7750.  Gene #712: 'KIAA0406 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
KIAA0406 MUTATED 1 3 0 0 7 0 0 0 2
KIAA0406 WILD-TYPE 39 59 28 80 62 48 43 28 72

Figure S2218.  Get High-res Image Gene #712: 'KIAA0406 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'KIAA0406 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0887 (Fisher's exact test), Q value = 0.32

Table S7751.  Gene #712: 'KIAA0406 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
KIAA0406 MUTATED 1 1 0 3
KIAA0406 WILD-TYPE 32 30 27 16
'KIAA0406 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.522 (Fisher's exact test), Q value = 0.84

Table S7752.  Gene #712: 'KIAA0406 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
KIAA0406 MUTATED 3 1 1 0
KIAA0406 WILD-TYPE 51 9 23 22
'LRRC23 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.941 (Fisher's exact test), Q value = 1

Table S7753.  Gene #713: 'LRRC23 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
LRRC23 MUTATED 4 3 2 0
LRRC23 WILD-TYPE 174 180 99 20
'LRRC23 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.477 (Fisher's exact test), Q value = 0.81

Table S7754.  Gene #713: 'LRRC23 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
LRRC23 MUTATED 4 1 4
LRRC23 WILD-TYPE 83 79 96
'LRRC23 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.31 (Fisher's exact test), Q value = 0.64

Table S7755.  Gene #713: 'LRRC23 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
LRRC23 MUTATED 0 4 4
LRRC23 WILD-TYPE 89 156 134
'LRRC23 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.512 (Fisher's exact test), Q value = 0.83

Table S7756.  Gene #713: 'LRRC23 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
LRRC23 MUTATED 4 4 0
LRRC23 WILD-TYPE 178 129 72
'LRRC23 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0185 (Fisher's exact test), Q value = 0.14

Table S7757.  Gene #713: 'LRRC23 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
LRRC23 MUTATED 3 2 4 0
LRRC23 WILD-TYPE 109 94 88 186

Figure S2219.  Get High-res Image Gene #713: 'LRRC23 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'LRRC23 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0271 (Fisher's exact test), Q value = 0.17

Table S7758.  Gene #713: 'LRRC23 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
LRRC23 MUTATED 2 1 2 2 2 0 0
LRRC23 WILD-TYPE 58 49 47 38 61 125 99

Figure S2220.  Get High-res Image Gene #713: 'LRRC23 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'LRRC23 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0385 (Fisher's exact test), Q value = 0.21

Table S7759.  Gene #713: 'LRRC23 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
LRRC23 MUTATED 5 3 0 1
LRRC23 WILD-TYPE 125 75 68 195

Figure S2221.  Get High-res Image Gene #713: 'LRRC23 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'LRRC23 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0678 (Fisher's exact test), Q value = 0.28

Table S7760.  Gene #713: 'LRRC23 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
LRRC23 MUTATED 2 3 1 0 1 0 2 0 0
LRRC23 WILD-TYPE 38 59 27 80 68 48 41 28 74
'LRRC23 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.7 (Fisher's exact test), Q value = 0.97

Table S7761.  Gene #713: 'LRRC23 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
LRRC23 MUTATED 2 1 0 1
LRRC23 WILD-TYPE 31 30 27 18
'LRRC23 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.87 (Fisher's exact test), Q value = 1

Table S7762.  Gene #713: 'LRRC23 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
LRRC23 MUTATED 3 0 1 0
LRRC23 WILD-TYPE 51 10 23 22
'FAM179A MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00632 (Fisher's exact test), Q value = 0.073

Table S7763.  Gene #714: 'FAM179A MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
FAM179A MUTATED 4 0 0 1
FAM179A WILD-TYPE 42 58 64 42

Figure S2222.  Get High-res Image Gene #714: 'FAM179A MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'FAM179A MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00645 (Fisher's exact test), Q value = 0.074

Table S7764.  Gene #714: 'FAM179A MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
FAM179A MUTATED 4 0 1
FAM179A WILD-TYPE 47 83 76

Figure S2223.  Get High-res Image Gene #714: 'FAM179A MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'FAM179A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00019 (Fisher's exact test), Q value = 0.008

Table S7765.  Gene #714: 'FAM179A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
FAM179A MUTATED 21 2 5 1
FAM179A WILD-TYPE 157 181 96 19

Figure S2224.  Get High-res Image Gene #714: 'FAM179A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'FAM179A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0285 (Fisher's exact test), Q value = 0.17

Table S7766.  Gene #714: 'FAM179A MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
FAM179A MUTATED 9 2 13
FAM179A WILD-TYPE 78 78 87

Figure S2225.  Get High-res Image Gene #714: 'FAM179A MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'FAM179A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0268 (Fisher's exact test), Q value = 0.17

Table S7767.  Gene #714: 'FAM179A MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
FAM179A MUTATED 1 12 13
FAM179A WILD-TYPE 88 148 125

Figure S2226.  Get High-res Image Gene #714: 'FAM179A MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'FAM179A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.114 (Fisher's exact test), Q value = 0.37

Table S7768.  Gene #714: 'FAM179A MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
FAM179A MUTATED 15 10 1
FAM179A WILD-TYPE 167 123 71
'FAM179A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00513 (Fisher's exact test), Q value = 0.065

Table S7769.  Gene #714: 'FAM179A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
FAM179A MUTATED 2 11 9 7
FAM179A WILD-TYPE 110 85 83 179

Figure S2227.  Get High-res Image Gene #714: 'FAM179A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'FAM179A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S7770.  Gene #714: 'FAM179A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
FAM179A MUTATED 3 3 13 1 3 0 6
FAM179A WILD-TYPE 57 47 36 39 60 125 93

Figure S2228.  Get High-res Image Gene #714: 'FAM179A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'FAM179A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.104 (Fisher's exact test), Q value = 0.36

Table S7771.  Gene #714: 'FAM179A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
FAM179A MUTATED 14 4 2 9
FAM179A WILD-TYPE 116 74 66 187
'FAM179A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00665 (Fisher's exact test), Q value = 0.075

Table S7772.  Gene #714: 'FAM179A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
FAM179A MUTATED 2 6 2 3 12 1 0 1 2
FAM179A WILD-TYPE 38 56 26 77 57 47 43 27 72

Figure S2229.  Get High-res Image Gene #714: 'FAM179A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'FAM179A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00268 (Fisher's exact test), Q value = 0.045

Table S7773.  Gene #714: 'FAM179A MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
FAM179A MUTATED 1 2 2 7
FAM179A WILD-TYPE 32 29 25 12

Figure S2230.  Get High-res Image Gene #714: 'FAM179A MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'FAM179A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0349 (Fisher's exact test), Q value = 0.19

Table S7774.  Gene #714: 'FAM179A MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
FAM179A MUTATED 6 0 6 0
FAM179A WILD-TYPE 48 10 18 22

Figure S2231.  Get High-res Image Gene #714: 'FAM179A MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

'OR2V2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.906 (Fisher's exact test), Q value = 1

Table S7775.  Gene #715: 'OR2V2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
OR2V2 MUTATED 3 2 1 0
OR2V2 WILD-TYPE 175 181 100 20
'OR2V2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.877 (Fisher's exact test), Q value = 1

Table S7776.  Gene #715: 'OR2V2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
OR2V2 MUTATED 2 1 3
OR2V2 WILD-TYPE 85 79 97
'OR2V2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.874 (Fisher's exact test), Q value = 1

Table S7777.  Gene #715: 'OR2V2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
OR2V2 MUTATED 1 2 3
OR2V2 WILD-TYPE 88 158 135
'OR2V2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.76 (Fisher's exact test), Q value = 1

Table S7778.  Gene #715: 'OR2V2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
OR2V2 MUTATED 4 1 1
OR2V2 WILD-TYPE 178 132 71
'OR2V2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.436 (Fisher's exact test), Q value = 0.76

Table S7779.  Gene #715: 'OR2V2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
OR2V2 MUTATED 1 2 2 1
OR2V2 WILD-TYPE 111 94 90 185
'OR2V2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0852 (Fisher's exact test), Q value = 0.32

Table S7780.  Gene #715: 'OR2V2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
OR2V2 MUTATED 0 0 2 1 2 0 1
OR2V2 WILD-TYPE 60 50 47 39 61 125 98
'OR2V2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.182 (Fisher's exact test), Q value = 0.48

Table S7781.  Gene #715: 'OR2V2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
OR2V2 MUTATED 4 1 0 1
OR2V2 WILD-TYPE 126 77 68 195
'OR2V2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.809 (Fisher's exact test), Q value = 1

Table S7782.  Gene #715: 'OR2V2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
OR2V2 MUTATED 0 1 0 2 2 0 1 0 0
OR2V2 WILD-TYPE 40 61 28 78 67 48 42 28 74
'OR2V2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.209 (Fisher's exact test), Q value = 0.52

Table S7783.  Gene #715: 'OR2V2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
OR2V2 MUTATED 0 2 0 1
OR2V2 WILD-TYPE 33 29 27 18
'OR2V2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S7784.  Gene #715: 'OR2V2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
OR2V2 MUTATED 2 0 1 0
OR2V2 WILD-TYPE 52 10 23 22
'WNK1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0716 (Fisher's exact test), Q value = 0.29

Table S7785.  Gene #716: 'WNK1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
WNK1 MUTATED 3 0 1 3
WNK1 WILD-TYPE 43 58 63 40
'WNK1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.106 (Fisher's exact test), Q value = 0.36

Table S7786.  Gene #716: 'WNK1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
WNK1 MUTATED 4 1 2
WNK1 WILD-TYPE 47 82 75
'WNK1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0886 (Fisher's exact test), Q value = 0.32

Table S7787.  Gene #716: 'WNK1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
WNK1 MUTATED 13 4 3 1
WNK1 WILD-TYPE 165 179 98 19
'WNK1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.211 (Fisher's exact test), Q value = 0.52

Table S7788.  Gene #716: 'WNK1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
WNK1 MUTATED 2 4 8
WNK1 WILD-TYPE 85 76 92
'WNK1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.207 (Fisher's exact test), Q value = 0.51

Table S7789.  Gene #716: 'WNK1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
WNK1 MUTATED 1 9 7
WNK1 WILD-TYPE 88 151 131
'WNK1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.346 (Fisher's exact test), Q value = 0.67

Table S7790.  Gene #716: 'WNK1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
WNK1 MUTATED 8 8 1
WNK1 WILD-TYPE 174 125 71
'WNK1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.251 (Fisher's exact test), Q value = 0.58

Table S7791.  Gene #716: 'WNK1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
WNK1 MUTATED 4 8 2 8
WNK1 WILD-TYPE 108 88 90 178
'WNK1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0419 (Fisher's exact test), Q value = 0.22

Table S7792.  Gene #716: 'WNK1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
WNK1 MUTATED 2 4 5 1 2 1 7
WNK1 WILD-TYPE 58 46 44 39 61 124 92

Figure S2232.  Get High-res Image Gene #716: 'WNK1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'WNK1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.923 (Fisher's exact test), Q value = 1

Table S7793.  Gene #716: 'WNK1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
WNK1 MUTATED 7 3 2 9
WNK1 WILD-TYPE 123 75 66 187
'WNK1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.269 (Fisher's exact test), Q value = 0.59

Table S7794.  Gene #716: 'WNK1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
WNK1 MUTATED 2 4 3 2 5 1 3 0 1
WNK1 WILD-TYPE 38 58 25 78 64 47 40 28 73
'FRS3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.324 (Fisher's exact test), Q value = 0.65

Table S7795.  Gene #717: 'FRS3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
FRS3 MUTATED 5 2 3 1
FRS3 WILD-TYPE 173 181 98 19
'FRS3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.301 (Fisher's exact test), Q value = 0.63

Table S7796.  Gene #717: 'FRS3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
FRS3 MUTATED 5 1 3
FRS3 WILD-TYPE 82 79 97
'FRS3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.603 (Fisher's exact test), Q value = 0.91

Table S7797.  Gene #717: 'FRS3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
FRS3 MUTATED 1 4 5
FRS3 WILD-TYPE 88 156 133
'FRS3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.918 (Fisher's exact test), Q value = 1

Table S7798.  Gene #717: 'FRS3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
FRS3 MUTATED 5 4 1
FRS3 WILD-TYPE 177 129 71
'FRS3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.336 (Fisher's exact test), Q value = 0.66

Table S7799.  Gene #717: 'FRS3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
FRS3 MUTATED 3 3 4 2
FRS3 WILD-TYPE 109 93 88 184
'FRS3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.229 (Fisher's exact test), Q value = 0.55

Table S7800.  Gene #717: 'FRS3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
FRS3 MUTATED 2 1 3 1 3 1 1
FRS3 WILD-TYPE 58 49 46 39 60 124 98
'FRS3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.433 (Fisher's exact test), Q value = 0.76

Table S7801.  Gene #717: 'FRS3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
FRS3 MUTATED 3 3 3 3
FRS3 WILD-TYPE 127 75 65 193
'FRS3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.942 (Fisher's exact test), Q value = 1

Table S7802.  Gene #717: 'FRS3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
FRS3 MUTATED 1 2 1 2 2 0 2 0 2
FRS3 WILD-TYPE 39 60 27 78 67 48 41 28 72
'FRS3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S7803.  Gene #717: 'FRS3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
FRS3 MUTATED 1 1 1 1
FRS3 WILD-TYPE 32 30 26 18
'FRS3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0258 (Fisher's exact test), Q value = 0.16

Table S7804.  Gene #717: 'FRS3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
FRS3 MUTATED 0 0 1 3
FRS3 WILD-TYPE 54 10 23 19

Figure S2233.  Get High-res Image Gene #717: 'FRS3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

'EEF1D MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0208 (Fisher's exact test), Q value = 0.15

Table S7805.  Gene #718: 'EEF1D MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
EEF1D MUTATED 9 1 1 1
EEF1D WILD-TYPE 169 182 100 19

Figure S2234.  Get High-res Image Gene #718: 'EEF1D MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'EEF1D MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.238 (Fisher's exact test), Q value = 0.56

Table S7806.  Gene #718: 'EEF1D MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
EEF1D MUTATED 5 1 6
EEF1D WILD-TYPE 82 79 94
'EEF1D MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.487 (Fisher's exact test), Q value = 0.81

Table S7807.  Gene #718: 'EEF1D MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
EEF1D MUTATED 3 3 6
EEF1D WILD-TYPE 86 157 132
'EEF1D MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.368 (Fisher's exact test), Q value = 0.7

Table S7808.  Gene #718: 'EEF1D MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
EEF1D MUTATED 8 2 2
EEF1D WILD-TYPE 174 131 70
'EEF1D MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00077 (Fisher's exact test), Q value = 0.021

Table S7809.  Gene #718: 'EEF1D MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
EEF1D MUTATED 2 7 3 0
EEF1D WILD-TYPE 110 89 89 186

Figure S2235.  Get High-res Image Gene #718: 'EEF1D MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'EEF1D MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 3e-05 (Fisher's exact test), Q value = 0.0022

Table S7810.  Gene #718: 'EEF1D MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
EEF1D MUTATED 0 2 6 3 1 0 0
EEF1D WILD-TYPE 60 48 43 37 62 125 99

Figure S2236.  Get High-res Image Gene #718: 'EEF1D MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'EEF1D MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.097 (Fisher's exact test), Q value = 0.34

Table S7811.  Gene #718: 'EEF1D MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
EEF1D MUTATED 7 2 1 2
EEF1D WILD-TYPE 123 76 67 194
'EEF1D MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0158 (Fisher's exact test), Q value = 0.12

Table S7812.  Gene #718: 'EEF1D MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
EEF1D MUTATED 3 4 0 0 1 1 3 0 0
EEF1D WILD-TYPE 37 58 28 80 68 47 40 28 74

Figure S2237.  Get High-res Image Gene #718: 'EEF1D MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'EEF1D MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.303 (Fisher's exact test), Q value = 0.63

Table S7813.  Gene #718: 'EEF1D MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
EEF1D MUTATED 2 0 1 2
EEF1D WILD-TYPE 31 31 26 17
'EEF1D MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S7814.  Gene #718: 'EEF1D MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
EEF1D MUTATED 3 0 1 1
EEF1D WILD-TYPE 51 10 23 21
'DOCK10 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0446 (Fisher's exact test), Q value = 0.22

Table S7815.  Gene #719: 'DOCK10 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
DOCK10 MUTATED 4 0 2 4
DOCK10 WILD-TYPE 42 58 62 39

Figure S2238.  Get High-res Image Gene #719: 'DOCK10 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'DOCK10 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.234 (Fisher's exact test), Q value = 0.55

Table S7816.  Gene #719: 'DOCK10 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
DOCK10 MUTATED 5 3 2
DOCK10 WILD-TYPE 46 80 75
'DOCK10 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0236 (Fisher's exact test), Q value = 0.16

Table S7817.  Gene #719: 'DOCK10 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
DOCK10 MUTATED 17 5 4 2
DOCK10 WILD-TYPE 161 178 97 18

Figure S2239.  Get High-res Image Gene #719: 'DOCK10 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'DOCK10 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.145 (Fisher's exact test), Q value = 0.42

Table S7818.  Gene #719: 'DOCK10 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
DOCK10 MUTATED 6 2 10
DOCK10 WILD-TYPE 81 78 90
'DOCK10 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.473 (Fisher's exact test), Q value = 0.8

Table S7819.  Gene #719: 'DOCK10 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
DOCK10 MUTATED 4 8 11
DOCK10 WILD-TYPE 85 152 127
'DOCK10 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.254 (Fisher's exact test), Q value = 0.58

Table S7820.  Gene #719: 'DOCK10 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
DOCK10 MUTATED 15 5 3
DOCK10 WILD-TYPE 167 128 69
'DOCK10 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.652 (Fisher's exact test), Q value = 0.94

Table S7821.  Gene #719: 'DOCK10 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
DOCK10 MUTATED 4 7 6 11
DOCK10 WILD-TYPE 108 89 86 175
'DOCK10 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.181 (Fisher's exact test), Q value = 0.48

Table S7822.  Gene #719: 'DOCK10 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
DOCK10 MUTATED 3 2 5 5 3 3 7
DOCK10 WILD-TYPE 57 48 44 35 60 122 92
'DOCK10 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.909 (Fisher's exact test), Q value = 1

Table S7823.  Gene #719: 'DOCK10 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
DOCK10 MUTATED 9 4 4 10
DOCK10 WILD-TYPE 121 74 64 186
'DOCK10 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.256 (Fisher's exact test), Q value = 0.58

Table S7824.  Gene #719: 'DOCK10 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
DOCK10 MUTATED 4 4 1 4 6 1 5 1 1
DOCK10 WILD-TYPE 36 58 27 76 63 47 38 27 73
'DOCK10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.663 (Fisher's exact test), Q value = 0.95

Table S7825.  Gene #719: 'DOCK10 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
DOCK10 MUTATED 2 2 2 3
DOCK10 WILD-TYPE 31 29 25 16
'DOCK10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.767 (Fisher's exact test), Q value = 1

Table S7826.  Gene #719: 'DOCK10 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
DOCK10 MUTATED 6 0 1 2
DOCK10 WILD-TYPE 48 10 23 20
'EXOC4 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.132 (Fisher's exact test), Q value = 0.41

Table S7827.  Gene #720: 'EXOC4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
EXOC4 MUTATED 1 0 1 3
EXOC4 WILD-TYPE 45 58 63 40
'EXOC4 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0454 (Fisher's exact test), Q value = 0.23

Table S7828.  Gene #720: 'EXOC4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
EXOC4 MUTATED 3 0 2
EXOC4 WILD-TYPE 48 83 75

Figure S2240.  Get High-res Image Gene #720: 'EXOC4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'EXOC4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00848 (Fisher's exact test), Q value = 0.086

Table S7829.  Gene #720: 'EXOC4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
EXOC4 MUTATED 15 3 2 0
EXOC4 WILD-TYPE 163 180 99 20

Figure S2241.  Get High-res Image Gene #720: 'EXOC4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'EXOC4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0773 (Fisher's exact test), Q value = 0.3

Table S7830.  Gene #720: 'EXOC4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
EXOC4 MUTATED 3 2 10
EXOC4 WILD-TYPE 84 78 90
'EXOC4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.641 (Fisher's exact test), Q value = 0.93

Table S7831.  Gene #720: 'EXOC4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
EXOC4 MUTATED 4 6 8
EXOC4 WILD-TYPE 85 154 130
'EXOC4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.349 (Fisher's exact test), Q value = 0.68

Table S7832.  Gene #720: 'EXOC4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
EXOC4 MUTATED 6 9 3
EXOC4 WILD-TYPE 176 124 69
'EXOC4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00919 (Fisher's exact test), Q value = 0.09

Table S7833.  Gene #720: 'EXOC4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
EXOC4 MUTATED 2 10 4 4
EXOC4 WILD-TYPE 110 86 88 182

Figure S2242.  Get High-res Image Gene #720: 'EXOC4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'EXOC4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00037 (Fisher's exact test), Q value = 0.013

Table S7834.  Gene #720: 'EXOC4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
EXOC4 MUTATED 2 6 6 1 1 0 4
EXOC4 WILD-TYPE 58 44 43 39 62 125 95

Figure S2243.  Get High-res Image Gene #720: 'EXOC4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'EXOC4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.323 (Fisher's exact test), Q value = 0.65

Table S7835.  Gene #720: 'EXOC4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
EXOC4 MUTATED 9 3 1 7
EXOC4 WILD-TYPE 121 75 67 189
'EXOC4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.107 (Fisher's exact test), Q value = 0.36

Table S7836.  Gene #720: 'EXOC4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
EXOC4 MUTATED 2 1 2 4 8 1 1 0 1
EXOC4 WILD-TYPE 38 61 26 76 61 47 42 28 73
'EXOC4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.355 (Fisher's exact test), Q value = 0.68

Table S7837.  Gene #720: 'EXOC4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
EXOC4 MUTATED 1 1 0 2
EXOC4 WILD-TYPE 32 30 27 17
'EXOC4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S7838.  Gene #720: 'EXOC4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
EXOC4 MUTATED 2 0 1 1
EXOC4 WILD-TYPE 52 10 23 21
'CEACAM1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.563 (Fisher's exact test), Q value = 0.87

Table S7839.  Gene #721: 'CEACAM1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
CEACAM1 MUTATED 1 2 2 0
CEACAM1 WILD-TYPE 177 181 99 20
'CEACAM1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.26 (Fisher's exact test), Q value = 0.58

Table S7840.  Gene #721: 'CEACAM1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
CEACAM1 MUTATED 2 2 0
CEACAM1 WILD-TYPE 85 78 100
'CEACAM1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.828 (Fisher's exact test), Q value = 1

Table S7841.  Gene #721: 'CEACAM1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
CEACAM1 MUTATED 1 1 2
CEACAM1 WILD-TYPE 88 159 136
'CEACAM1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.184 (Fisher's exact test), Q value = 0.48

Table S7842.  Gene #721: 'CEACAM1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
CEACAM1 MUTATED 4 0 0
CEACAM1 WILD-TYPE 178 133 72
'CEACAM1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.15 (Fisher's exact test), Q value = 0.43

Table S7843.  Gene #721: 'CEACAM1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
CEACAM1 MUTATED 2 2 1 0
CEACAM1 WILD-TYPE 110 94 91 186
'CEACAM1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.225 (Fisher's exact test), Q value = 0.54

Table S7844.  Gene #721: 'CEACAM1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
CEACAM1 MUTATED 1 0 0 1 2 0 1
CEACAM1 WILD-TYPE 59 50 49 39 61 125 98
'CEACAM1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.376 (Fisher's exact test), Q value = 0.71

Table S7845.  Gene #721: 'CEACAM1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
CEACAM1 MUTATED 1 2 1 1
CEACAM1 WILD-TYPE 129 76 67 195
'CEACAM1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.826 (Fisher's exact test), Q value = 1

Table S7846.  Gene #721: 'CEACAM1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
CEACAM1 MUTATED 0 2 0 1 1 1 0 0 0
CEACAM1 WILD-TYPE 40 60 28 79 68 47 43 28 74
'CEACAM1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.505 (Fisher's exact test), Q value = 0.83

Table S7847.  Gene #721: 'CEACAM1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
CEACAM1 MUTATED 0 2 1 1
CEACAM1 WILD-TYPE 33 29 26 18
'CEACAM1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0191 (Fisher's exact test), Q value = 0.14

Table S7848.  Gene #721: 'CEACAM1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
CEACAM1 MUTATED 0 2 1 1
CEACAM1 WILD-TYPE 54 8 23 21

Figure S2244.  Get High-res Image Gene #721: 'CEACAM1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

'EIF5B MUTATION STATUS' versus 'CN_CNMF'

P value = 8e-04 (Fisher's exact test), Q value = 0.021

Table S7849.  Gene #722: 'EIF5B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
EIF5B MUTATED 14 1 1 0
EIF5B WILD-TYPE 164 182 100 20

Figure S2245.  Get High-res Image Gene #722: 'EIF5B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'EIF5B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00521 (Fisher's exact test), Q value = 0.065

Table S7850.  Gene #722: 'EIF5B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
EIF5B MUTATED 3 0 10
EIF5B WILD-TYPE 84 80 90

Figure S2246.  Get High-res Image Gene #722: 'EIF5B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'EIF5B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.344 (Fisher's exact test), Q value = 0.67

Table S7851.  Gene #722: 'EIF5B MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
EIF5B MUTATED 4 3 6
EIF5B WILD-TYPE 85 157 132
'EIF5B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.934 (Fisher's exact test), Q value = 1

Table S7852.  Gene #722: 'EIF5B MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
EIF5B MUTATED 7 4 2
EIF5B WILD-TYPE 175 129 70
'EIF5B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00329 (Fisher's exact test), Q value = 0.052

Table S7853.  Gene #722: 'EIF5B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
EIF5B MUTATED 0 8 4 4
EIF5B WILD-TYPE 112 88 88 182

Figure S2247.  Get High-res Image Gene #722: 'EIF5B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'EIF5B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 2e-05 (Fisher's exact test), Q value = 0.0017

Table S7854.  Gene #722: 'EIF5B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
EIF5B MUTATED 1 0 9 1 1 0 4
EIF5B WILD-TYPE 59 50 40 39 62 125 95

Figure S2248.  Get High-res Image Gene #722: 'EIF5B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'EIF5B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0499 (Fisher's exact test), Q value = 0.24

Table S7855.  Gene #722: 'EIF5B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
EIF5B MUTATED 9 1 0 6
EIF5B WILD-TYPE 121 77 68 190

Figure S2249.  Get High-res Image Gene #722: 'EIF5B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'EIF5B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0329 (Fisher's exact test), Q value = 0.19

Table S7856.  Gene #722: 'EIF5B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
EIF5B MUTATED 1 3 1 1 8 0 1 0 1
EIF5B WILD-TYPE 39 59 27 79 61 48 42 28 73

Figure S2250.  Get High-res Image Gene #722: 'EIF5B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'EIF5B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 9e-04 (Fisher's exact test), Q value = 0.023

Table S7857.  Gene #722: 'EIF5B MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
EIF5B MUTATED 0 0 0 4
EIF5B WILD-TYPE 33 31 27 15

Figure S2251.  Get High-res Image Gene #722: 'EIF5B MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'EIF5B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.672 (Fisher's exact test), Q value = 0.95

Table S7858.  Gene #722: 'EIF5B MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
EIF5B MUTATED 2 0 2 0
EIF5B WILD-TYPE 52 10 22 22
'PRAMEF12 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.547 (Fisher's exact test), Q value = 0.87

Table S7859.  Gene #723: 'PRAMEF12 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
PRAMEF12 MUTATED 4 3 0 0
PRAMEF12 WILD-TYPE 174 180 101 20
'PRAMEF12 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S7860.  Gene #723: 'PRAMEF12 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
PRAMEF12 MUTATED 2 1 2
PRAMEF12 WILD-TYPE 85 79 98
'PRAMEF12 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.795 (Fisher's exact test), Q value = 1

Table S7861.  Gene #723: 'PRAMEF12 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
PRAMEF12 MUTATED 1 4 2
PRAMEF12 WILD-TYPE 88 156 136
'PRAMEF12 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.162 (Fisher's exact test), Q value = 0.46

Table S7862.  Gene #723: 'PRAMEF12 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
PRAMEF12 MUTATED 1 4 2
PRAMEF12 WILD-TYPE 181 129 70
'PRAMEF12 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.834 (Fisher's exact test), Q value = 1

Table S7863.  Gene #723: 'PRAMEF12 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
PRAMEF12 MUTATED 2 2 1 2
PRAMEF12 WILD-TYPE 110 94 91 184
'PRAMEF12 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.188 (Fisher's exact test), Q value = 0.49

Table S7864.  Gene #723: 'PRAMEF12 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
PRAMEF12 MUTATED 1 1 2 0 2 0 1
PRAMEF12 WILD-TYPE 59 49 47 40 61 125 98
'PRAMEF12 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.48 (Fisher's exact test), Q value = 0.81

Table S7865.  Gene #723: 'PRAMEF12 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
PRAMEF12 MUTATED 3 2 0 2
PRAMEF12 WILD-TYPE 127 76 68 194
'PRAMEF12 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.176 (Fisher's exact test), Q value = 0.48

Table S7866.  Gene #723: 'PRAMEF12 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
PRAMEF12 MUTATED 0 2 0 1 4 0 0 0 0
PRAMEF12 WILD-TYPE 40 60 28 79 65 48 43 28 74
'PRAMEF12 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S7867.  Gene #723: 'PRAMEF12 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
PRAMEF12 MUTATED 1 1 1 1
PRAMEF12 WILD-TYPE 32 30 26 18
'PRAMEF12 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.175 (Fisher's exact test), Q value = 0.47

Table S7868.  Gene #723: 'PRAMEF12 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
PRAMEF12 MUTATED 1 1 2 0
PRAMEF12 WILD-TYPE 53 9 22 22
'SF1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.074 (Fisher's exact test), Q value = 0.29

Table S7869.  Gene #724: 'SF1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
SF1 MUTATED 2 0 0 2
SF1 WILD-TYPE 44 58 64 41
'SF1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.04 (Fisher's exact test), Q value = 0.21

Table S7870.  Gene #724: 'SF1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
SF1 MUTATED 3 0 1
SF1 WILD-TYPE 48 83 76

Figure S2252.  Get High-res Image Gene #724: 'SF1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'SF1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.188 (Fisher's exact test), Q value = 0.49

Table S7871.  Gene #724: 'SF1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
SF1 MUTATED 10 5 1 0
SF1 WILD-TYPE 168 178 100 20
'SF1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.514 (Fisher's exact test), Q value = 0.83

Table S7872.  Gene #724: 'SF1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
SF1 MUTATED 4 4 2
SF1 WILD-TYPE 83 76 98
'SF1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.162 (Fisher's exact test), Q value = 0.45

Table S7873.  Gene #724: 'SF1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
SF1 MUTATED 1 4 8
SF1 WILD-TYPE 88 156 130
'SF1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.707 (Fisher's exact test), Q value = 0.98

Table S7874.  Gene #724: 'SF1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
SF1 MUTATED 7 5 1
SF1 WILD-TYPE 175 128 71
'SF1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.889 (Fisher's exact test), Q value = 1

Table S7875.  Gene #724: 'SF1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
SF1 MUTATED 4 3 4 5
SF1 WILD-TYPE 108 93 88 181
'SF1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0106 (Fisher's exact test), Q value = 0.099

Table S7876.  Gene #724: 'SF1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
SF1 MUTATED 2 1 4 0 5 0 4
SF1 WILD-TYPE 58 49 45 40 58 125 95

Figure S2253.  Get High-res Image Gene #724: 'SF1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'SF1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.436 (Fisher's exact test), Q value = 0.76

Table S7877.  Gene #724: 'SF1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
SF1 MUTATED 4 5 1 6
SF1 WILD-TYPE 126 73 67 190
'SF1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0154 (Fisher's exact test), Q value = 0.12

Table S7878.  Gene #724: 'SF1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
SF1 MUTATED 0 5 0 3 7 0 0 0 1
SF1 WILD-TYPE 40 57 28 77 62 48 43 28 73

Figure S2254.  Get High-res Image Gene #724: 'SF1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'SF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.931 (Fisher's exact test), Q value = 1

Table S7879.  Gene #724: 'SF1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
SF1 MUTATED 1 2 1 1
SF1 WILD-TYPE 32 29 26 18
'SF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.266 (Fisher's exact test), Q value = 0.59

Table S7880.  Gene #724: 'SF1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
SF1 MUTATED 4 1 0 0
SF1 WILD-TYPE 50 9 24 22
'BTNL3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0046 (Fisher's exact test), Q value = 0.062

Table S7881.  Gene #725: 'BTNL3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
BTNL3 MUTATED 8 0 0 0
BTNL3 WILD-TYPE 170 183 101 20

Figure S2255.  Get High-res Image Gene #725: 'BTNL3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'BTNL3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.203 (Fisher's exact test), Q value = 0.51

Table S7882.  Gene #725: 'BTNL3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
BTNL3 MUTATED 3 0 4
BTNL3 WILD-TYPE 84 80 96
'BTNL3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.176 (Fisher's exact test), Q value = 0.48

Table S7883.  Gene #725: 'BTNL3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
BTNL3 MUTATED 0 3 5
BTNL3 WILD-TYPE 89 157 133
'BTNL3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.29 (Fisher's exact test), Q value = 0.62

Table S7884.  Gene #725: 'BTNL3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
BTNL3 MUTATED 6 2 0
BTNL3 WILD-TYPE 176 131 72
'BTNL3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0109 (Fisher's exact test), Q value = 0.1

Table S7885.  Gene #725: 'BTNL3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
BTNL3 MUTATED 0 5 2 1
BTNL3 WILD-TYPE 112 91 90 185

Figure S2256.  Get High-res Image Gene #725: 'BTNL3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'BTNL3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 5e-05 (Fisher's exact test), Q value = 0.0032

Table S7886.  Gene #725: 'BTNL3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
BTNL3 MUTATED 1 0 6 0 1 0 0
BTNL3 WILD-TYPE 59 50 43 40 62 125 99

Figure S2257.  Get High-res Image Gene #725: 'BTNL3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'BTNL3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.328 (Fisher's exact test), Q value = 0.66

Table S7887.  Gene #725: 'BTNL3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
BTNL3 MUTATED 4 2 0 2
BTNL3 WILD-TYPE 126 76 68 194
'BTNL3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.144 (Fisher's exact test), Q value = 0.42

Table S7888.  Gene #725: 'BTNL3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
BTNL3 MUTATED 1 3 0 0 3 0 1 0 0
BTNL3 WILD-TYPE 39 59 28 80 66 48 42 28 74
'EFCAB1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.154 (Fisher's exact test), Q value = 0.44

Table S7889.  Gene #726: 'EFCAB1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
EFCAB1 MUTATED 0 1 0 2
EFCAB1 WILD-TYPE 46 57 64 41
'EFCAB1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S7890.  Gene #726: 'EFCAB1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
EFCAB1 MUTATED 1 1 1
EFCAB1 WILD-TYPE 50 82 76
'EFCAB1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.637 (Fisher's exact test), Q value = 0.93

Table S7891.  Gene #726: 'EFCAB1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
EFCAB1 MUTATED 3 2 0 0
EFCAB1 WILD-TYPE 175 181 101 20
'EFCAB1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.359 (Fisher's exact test), Q value = 0.69

Table S7892.  Gene #726: 'EFCAB1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
EFCAB1 MUTATED 0 1 3
EFCAB1 WILD-TYPE 89 159 135
'EFCAB1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.671 (Fisher's exact test), Q value = 0.95

Table S7893.  Gene #726: 'EFCAB1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
EFCAB1 MUTATED 3 1 0
EFCAB1 WILD-TYPE 179 132 72
'EFCAB1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.924 (Fisher's exact test), Q value = 1

Table S7894.  Gene #726: 'EFCAB1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
EFCAB1 MUTATED 1 1 0 3
EFCAB1 WILD-TYPE 111 95 92 183
'EFCAB1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.823 (Fisher's exact test), Q value = 1

Table S7895.  Gene #726: 'EFCAB1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
EFCAB1 MUTATED 1 0 0 1 1 1 1
EFCAB1 WILD-TYPE 59 50 49 39 62 124 98
'EFCAB1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.241 (Fisher's exact test), Q value = 0.57

Table S7896.  Gene #726: 'EFCAB1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
EFCAB1 MUTATED 1 0 2 1
EFCAB1 WILD-TYPE 129 78 66 195
'EFCAB1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.886 (Fisher's exact test), Q value = 1

Table S7897.  Gene #726: 'EFCAB1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
EFCAB1 MUTATED 1 1 0 1 1 0 0 0 0
EFCAB1 WILD-TYPE 39 61 28 79 68 48 43 28 74
'IKZF4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.321 (Fisher's exact test), Q value = 0.65

Table S7898.  Gene #727: 'IKZF4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
IKZF4 MUTATED 7 4 1 1
IKZF4 WILD-TYPE 171 179 100 19
'IKZF4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S7899.  Gene #727: 'IKZF4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
IKZF4 MUTATED 4 4 4
IKZF4 WILD-TYPE 83 76 96
'IKZF4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.869 (Fisher's exact test), Q value = 1

Table S7900.  Gene #727: 'IKZF4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
IKZF4 MUTATED 2 6 4
IKZF4 WILD-TYPE 87 154 134
'IKZF4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.636 (Fisher's exact test), Q value = 0.93

Table S7901.  Gene #727: 'IKZF4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
IKZF4 MUTATED 7 4 1
IKZF4 WILD-TYPE 175 129 71
'IKZF4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0216 (Fisher's exact test), Q value = 0.15

Table S7902.  Gene #727: 'IKZF4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
IKZF4 MUTATED 4 6 2 1
IKZF4 WILD-TYPE 108 90 90 185

Figure S2258.  Get High-res Image Gene #727: 'IKZF4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'IKZF4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00098 (Fisher's exact test), Q value = 0.024

Table S7903.  Gene #727: 'IKZF4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
IKZF4 MUTATED 0 5 3 1 3 0 1
IKZF4 WILD-TYPE 60 45 46 39 60 125 98

Figure S2259.  Get High-res Image Gene #727: 'IKZF4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'IKZF4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0103 (Fisher's exact test), Q value = 0.097

Table S7904.  Gene #727: 'IKZF4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
IKZF4 MUTATED 6 5 1 1
IKZF4 WILD-TYPE 124 73 67 195

Figure S2260.  Get High-res Image Gene #727: 'IKZF4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'IKZF4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0365 (Fisher's exact test), Q value = 0.2

Table S7905.  Gene #727: 'IKZF4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
IKZF4 MUTATED 3 4 1 0 1 2 2 0 0
IKZF4 WILD-TYPE 37 58 27 80 68 46 41 28 74

Figure S2261.  Get High-res Image Gene #727: 'IKZF4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'IKZF4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.909 (Fisher's exact test), Q value = 1

Table S7906.  Gene #727: 'IKZF4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
IKZF4 MUTATED 2 3 1 1
IKZF4 WILD-TYPE 31 28 26 18
'IKZF4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.886 (Fisher's exact test), Q value = 1

Table S7907.  Gene #727: 'IKZF4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
IKZF4 MUTATED 5 0 1 1
IKZF4 WILD-TYPE 49 10 23 21
'ZNF564 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0165 (Fisher's exact test), Q value = 0.13

Table S7908.  Gene #728: 'ZNF564 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ZNF564 MUTATED 1 0 0 3
ZNF564 WILD-TYPE 45 58 64 40

Figure S2262.  Get High-res Image Gene #728: 'ZNF564 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'ZNF564 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.231 (Fisher's exact test), Q value = 0.55

Table S7909.  Gene #728: 'ZNF564 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ZNF564 MUTATED 2 2 0
ZNF564 WILD-TYPE 49 81 77
'ZNF564 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.225 (Fisher's exact test), Q value = 0.54

Table S7910.  Gene #728: 'ZNF564 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ZNF564 MUTATED 8 2 2 0
ZNF564 WILD-TYPE 170 181 99 20
'ZNF564 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.146 (Fisher's exact test), Q value = 0.43

Table S7911.  Gene #728: 'ZNF564 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ZNF564 MUTATED 4 0 4
ZNF564 WILD-TYPE 83 80 96
'ZNF564 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.833 (Fisher's exact test), Q value = 1

Table S7912.  Gene #728: 'ZNF564 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ZNF564 MUTATED 1 4 4
ZNF564 WILD-TYPE 88 156 134
'ZNF564 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.822 (Fisher's exact test), Q value = 1

Table S7913.  Gene #728: 'ZNF564 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ZNF564 MUTATED 4 4 1
ZNF564 WILD-TYPE 178 129 71
'ZNF564 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.72 (Fisher's exact test), Q value = 0.99

Table S7914.  Gene #728: 'ZNF564 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ZNF564 MUTATED 2 4 2 4
ZNF564 WILD-TYPE 110 92 90 182
'ZNF564 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.337 (Fisher's exact test), Q value = 0.66

Table S7915.  Gene #728: 'ZNF564 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ZNF564 MUTATED 1 1 3 0 2 1 4
ZNF564 WILD-TYPE 59 49 46 40 61 124 95
'ZNF564 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.785 (Fisher's exact test), Q value = 1

Table S7916.  Gene #728: 'ZNF564 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ZNF564 MUTATED 3 3 1 4
ZNF564 WILD-TYPE 127 75 67 192
'ZNF564 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0903 (Fisher's exact test), Q value = 0.33

Table S7917.  Gene #728: 'ZNF564 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ZNF564 MUTATED 0 2 2 1 4 0 2 0 0
ZNF564 WILD-TYPE 40 60 26 79 65 48 41 28 74
'SLC46A3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.307 (Fisher's exact test), Q value = 0.64

Table S7918.  Gene #729: 'SLC46A3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
SLC46A3 MUTATED 1 1 0 2
SLC46A3 WILD-TYPE 45 57 64 41
'SLC46A3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S7919.  Gene #729: 'SLC46A3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
SLC46A3 MUTATED 1 2 1
SLC46A3 WILD-TYPE 50 81 76
'SLC46A3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0234 (Fisher's exact test), Q value = 0.16

Table S7920.  Gene #729: 'SLC46A3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
SLC46A3 MUTATED 8 1 0 0
SLC46A3 WILD-TYPE 170 182 101 20

Figure S2263.  Get High-res Image Gene #729: 'SLC46A3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'SLC46A3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.075 (Fisher's exact test), Q value = 0.29

Table S7921.  Gene #729: 'SLC46A3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
SLC46A3 MUTATED 4 0 1
SLC46A3 WILD-TYPE 83 80 99
'SLC46A3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.435 (Fisher's exact test), Q value = 0.76

Table S7922.  Gene #729: 'SLC46A3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
SLC46A3 MUTATED 0 4 3
SLC46A3 WILD-TYPE 89 156 135
'SLC46A3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.307 (Fisher's exact test), Q value = 0.64

Table S7923.  Gene #729: 'SLC46A3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
SLC46A3 MUTATED 3 4 0
SLC46A3 WILD-TYPE 179 129 72
'SLC46A3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.194 (Fisher's exact test), Q value = 0.5

Table S7924.  Gene #729: 'SLC46A3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
SLC46A3 MUTATED 0 1 3 5
SLC46A3 WILD-TYPE 112 95 89 181
'SLC46A3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.176 (Fisher's exact test), Q value = 0.48

Table S7925.  Gene #729: 'SLC46A3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
SLC46A3 MUTATED 1 1 2 0 1 0 4
SLC46A3 WILD-TYPE 59 49 47 40 62 125 95
'SLC46A3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.693 (Fisher's exact test), Q value = 0.97

Table S7926.  Gene #729: 'SLC46A3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
SLC46A3 MUTATED 2 2 0 5
SLC46A3 WILD-TYPE 128 76 68 191
'SLC46A3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.531 (Fisher's exact test), Q value = 0.85

Table S7927.  Gene #729: 'SLC46A3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
SLC46A3 MUTATED 0 3 1 1 2 0 0 1 1
SLC46A3 WILD-TYPE 40 59 27 79 67 48 43 27 73
'VAV3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0548 (Fisher's exact test), Q value = 0.25

Table S7928.  Gene #730: 'VAV3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
VAV3 MUTATED 4 0 1 2
VAV3 WILD-TYPE 42 58 63 41
'VAV3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.431 (Fisher's exact test), Q value = 0.76

Table S7929.  Gene #730: 'VAV3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
VAV3 MUTATED 3 3 1
VAV3 WILD-TYPE 48 80 76
'VAV3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0032 (Fisher's exact test), Q value = 0.051

Table S7930.  Gene #730: 'VAV3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
VAV3 MUTATED 19 4 3 1
VAV3 WILD-TYPE 159 179 98 19

Figure S2264.  Get High-res Image Gene #730: 'VAV3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'VAV3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.285 (Fisher's exact test), Q value = 0.61

Table S7931.  Gene #730: 'VAV3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
VAV3 MUTATED 9 3 7
VAV3 WILD-TYPE 78 77 93
'VAV3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0127 (Fisher's exact test), Q value = 0.11

Table S7932.  Gene #730: 'VAV3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
VAV3 MUTATED 2 6 15
VAV3 WILD-TYPE 87 154 123

Figure S2265.  Get High-res Image Gene #730: 'VAV3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'VAV3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.779 (Fisher's exact test), Q value = 1

Table S7933.  Gene #730: 'VAV3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
VAV3 MUTATED 11 9 3
VAV3 WILD-TYPE 171 124 69
'VAV3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0555 (Fisher's exact test), Q value = 0.26

Table S7934.  Gene #730: 'VAV3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
VAV3 MUTATED 3 11 4 9
VAV3 WILD-TYPE 109 85 88 177
'VAV3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.238 (Fisher's exact test), Q value = 0.56

Table S7935.  Gene #730: 'VAV3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
VAV3 MUTATED 3 4 4 5 3 3 5
VAV3 WILD-TYPE 57 46 45 35 60 122 94
'VAV3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.219 (Fisher's exact test), Q value = 0.53

Table S7936.  Gene #730: 'VAV3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
VAV3 MUTATED 9 7 1 10
VAV3 WILD-TYPE 121 71 67 186
'VAV3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0579 (Fisher's exact test), Q value = 0.26

Table S7937.  Gene #730: 'VAV3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
VAV3 MUTATED 5 5 3 3 6 0 2 2 1
VAV3 WILD-TYPE 35 57 25 77 63 48 41 26 73
'VAV3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0518 (Fisher's exact test), Q value = 0.25

Table S7938.  Gene #730: 'VAV3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
VAV3 MUTATED 4 0 0 1
VAV3 WILD-TYPE 29 31 27 18
'VAV3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.265 (Fisher's exact test), Q value = 0.59

Table S7939.  Gene #730: 'VAV3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
VAV3 MUTATED 5 0 0 0
VAV3 WILD-TYPE 49 10 24 22
'RPGRIP1L MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00267 (Fisher's exact test), Q value = 0.045

Table S7940.  Gene #731: 'RPGRIP1L MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
RPGRIP1L MUTATED 4 0 0 4
RPGRIP1L WILD-TYPE 42 58 64 39

Figure S2266.  Get High-res Image Gene #731: 'RPGRIP1L MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'RPGRIP1L MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.31 (Fisher's exact test), Q value = 0.64

Table S7941.  Gene #731: 'RPGRIP1L MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
RPGRIP1L MUTATED 4 2 2
RPGRIP1L WILD-TYPE 47 81 75
'RPGRIP1L MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0301 (Fisher's exact test), Q value = 0.18

Table S7942.  Gene #731: 'RPGRIP1L MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
RPGRIP1L MUTATED 13 3 2 0
RPGRIP1L WILD-TYPE 165 180 99 20

Figure S2267.  Get High-res Image Gene #731: 'RPGRIP1L MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'RPGRIP1L MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.92 (Fisher's exact test), Q value = 1

Table S7943.  Gene #731: 'RPGRIP1L MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
RPGRIP1L MUTATED 4 3 3
RPGRIP1L WILD-TYPE 83 77 97
'RPGRIP1L MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.164 (Fisher's exact test), Q value = 0.46

Table S7944.  Gene #731: 'RPGRIP1L MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
RPGRIP1L MUTATED 1 5 8
RPGRIP1L WILD-TYPE 88 155 130
'RPGRIP1L MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.768 (Fisher's exact test), Q value = 1

Table S7945.  Gene #731: 'RPGRIP1L MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
RPGRIP1L MUTATED 8 4 2
RPGRIP1L WILD-TYPE 174 129 70
'RPGRIP1L MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.663 (Fisher's exact test), Q value = 0.95

Table S7946.  Gene #731: 'RPGRIP1L MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
RPGRIP1L MUTATED 3 5 2 8
RPGRIP1L WILD-TYPE 109 91 90 178
'RPGRIP1L MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.105 (Fisher's exact test), Q value = 0.36

Table S7947.  Gene #731: 'RPGRIP1L MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
RPGRIP1L MUTATED 3 1 4 2 0 2 6
RPGRIP1L WILD-TYPE 57 49 45 38 63 123 93
'RPGRIP1L MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.754 (Fisher's exact test), Q value = 1

Table S7948.  Gene #731: 'RPGRIP1L MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
RPGRIP1L MUTATED 6 2 1 8
RPGRIP1L WILD-TYPE 124 76 67 188
'RPGRIP1L MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.122 (Fisher's exact test), Q value = 0.39

Table S7949.  Gene #731: 'RPGRIP1L MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
RPGRIP1L MUTATED 1 2 2 3 6 0 2 1 0
RPGRIP1L WILD-TYPE 39 60 26 77 63 48 41 27 74
'RPGRIP1L MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0259 (Fisher's exact test), Q value = 0.16

Table S7950.  Gene #731: 'RPGRIP1L MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
RPGRIP1L MUTATED 3 0 0 3
RPGRIP1L WILD-TYPE 30 31 27 16

Figure S2268.  Get High-res Image Gene #731: 'RPGRIP1L MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'RPGRIP1L MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.365 (Fisher's exact test), Q value = 0.69

Table S7951.  Gene #731: 'RPGRIP1L MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
RPGRIP1L MUTATED 2 0 3 1
RPGRIP1L WILD-TYPE 52 10 21 21
'GATA1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00582 (Fisher's exact test), Q value = 0.069

Table S7952.  Gene #732: 'GATA1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
GATA1 MUTATED 4 0 0 1
GATA1 WILD-TYPE 42 58 64 42

Figure S2269.  Get High-res Image Gene #732: 'GATA1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'GATA1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.253 (Fisher's exact test), Q value = 0.58

Table S7953.  Gene #732: 'GATA1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
GATA1 MUTATED 3 1 1
GATA1 WILD-TYPE 48 82 76
'GATA1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.405 (Fisher's exact test), Q value = 0.73

Table S7954.  Gene #732: 'GATA1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
GATA1 MUTATED 9 4 3 1
GATA1 WILD-TYPE 169 179 98 19
'GATA1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.927 (Fisher's exact test), Q value = 1

Table S7955.  Gene #732: 'GATA1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
GATA1 MUTATED 3 4 4
GATA1 WILD-TYPE 84 76 96
'GATA1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.933 (Fisher's exact test), Q value = 1

Table S7956.  Gene #732: 'GATA1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
GATA1 MUTATED 2 5 5
GATA1 WILD-TYPE 87 155 133
'GATA1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.926 (Fisher's exact test), Q value = 1

Table S7957.  Gene #732: 'GATA1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
GATA1 MUTATED 5 5 2
GATA1 WILD-TYPE 177 128 70
'GATA1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.819 (Fisher's exact test), Q value = 1

Table S7958.  Gene #732: 'GATA1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
GATA1 MUTATED 5 4 2 6
GATA1 WILD-TYPE 107 92 90 180
'GATA1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0572 (Fisher's exact test), Q value = 0.26

Table S7959.  Gene #732: 'GATA1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
GATA1 MUTATED 2 3 5 0 2 1 4
GATA1 WILD-TYPE 58 47 44 40 61 124 95
'GATA1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0529 (Fisher's exact test), Q value = 0.25

Table S7960.  Gene #732: 'GATA1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
GATA1 MUTATED 9 1 0 7
GATA1 WILD-TYPE 121 77 68 189
'GATA1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0423 (Fisher's exact test), Q value = 0.22

Table S7961.  Gene #732: 'GATA1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
GATA1 MUTATED 2 2 1 2 8 1 1 0 0
GATA1 WILD-TYPE 38 60 27 78 61 47 42 28 74

Figure S2270.  Get High-res Image Gene #732: 'GATA1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'GATA1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.872 (Fisher's exact test), Q value = 1

Table S7962.  Gene #732: 'GATA1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
GATA1 MUTATED 1 1 0 1
GATA1 WILD-TYPE 32 30 27 18
'GATA1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.379 (Fisher's exact test), Q value = 0.71

Table S7963.  Gene #732: 'GATA1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
GATA1 MUTATED 2 1 0 0
GATA1 WILD-TYPE 52 9 24 22
'KIF21B MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0037 (Fisher's exact test), Q value = 0.055

Table S7964.  Gene #733: 'KIF21B MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
KIF21B MUTATED 1 0 0 4
KIF21B WILD-TYPE 45 58 64 39

Figure S2271.  Get High-res Image Gene #733: 'KIF21B MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'KIF21B MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0187 (Fisher's exact test), Q value = 0.14

Table S7965.  Gene #733: 'KIF21B MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
KIF21B MUTATED 4 1 0
KIF21B WILD-TYPE 47 82 77

Figure S2272.  Get High-res Image Gene #733: 'KIF21B MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'KIF21B MUTATION STATUS' versus 'CN_CNMF'

P value = 6e-05 (Fisher's exact test), Q value = 0.0037

Table S7966.  Gene #733: 'KIF21B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
KIF21B MUTATED 18 2 2 3
KIF21B WILD-TYPE 160 181 99 17

Figure S2273.  Get High-res Image Gene #733: 'KIF21B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'KIF21B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0993 (Fisher's exact test), Q value = 0.35

Table S7967.  Gene #733: 'KIF21B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
KIF21B MUTATED 9 2 9
KIF21B WILD-TYPE 78 78 91
'KIF21B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0793 (Fisher's exact test), Q value = 0.3

Table S7968.  Gene #733: 'KIF21B MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
KIF21B MUTATED 5 5 13
KIF21B WILD-TYPE 84 155 125
'KIF21B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00873 (Fisher's exact test), Q value = 0.087

Table S7969.  Gene #733: 'KIF21B MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
KIF21B MUTATED 18 3 2
KIF21B WILD-TYPE 164 130 70

Figure S2274.  Get High-res Image Gene #733: 'KIF21B MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'KIF21B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0193 (Fisher's exact test), Q value = 0.14

Table S7970.  Gene #733: 'KIF21B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
KIF21B MUTATED 3 10 7 5
KIF21B WILD-TYPE 109 86 85 181

Figure S2275.  Get High-res Image Gene #733: 'KIF21B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'KIF21B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 2e-05 (Fisher's exact test), Q value = 0.0017

Table S7971.  Gene #733: 'KIF21B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
KIF21B MUTATED 1 2 10 4 3 0 5
KIF21B WILD-TYPE 59 48 39 36 60 125 94

Figure S2276.  Get High-res Image Gene #733: 'KIF21B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'KIF21B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00709 (Fisher's exact test), Q value = 0.078

Table S7972.  Gene #733: 'KIF21B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
KIF21B MUTATED 12 6 0 6
KIF21B WILD-TYPE 118 72 68 190

Figure S2277.  Get High-res Image Gene #733: 'KIF21B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'KIF21B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0103 (Fisher's exact test), Q value = 0.097

Table S7973.  Gene #733: 'KIF21B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
KIF21B MUTATED 4 6 2 3 7 0 2 0 0
KIF21B WILD-TYPE 36 56 26 77 62 48 41 28 74

Figure S2278.  Get High-res Image Gene #733: 'KIF21B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'KIF21B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.648 (Fisher's exact test), Q value = 0.94

Table S7974.  Gene #733: 'KIF21B MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
KIF21B MUTATED 2 4 1 1
KIF21B WILD-TYPE 31 27 26 18
'KIF21B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.34 (Fisher's exact test), Q value = 0.67

Table S7975.  Gene #733: 'KIF21B MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
KIF21B MUTATED 3 2 1 2
KIF21B WILD-TYPE 51 8 23 20
'HELQ MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00364 (Fisher's exact test), Q value = 0.055

Table S7976.  Gene #734: 'HELQ MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
HELQ MUTATED 1 0 0 4
HELQ WILD-TYPE 45 58 64 39

Figure S2279.  Get High-res Image Gene #734: 'HELQ MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'HELQ MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.252 (Fisher's exact test), Q value = 0.58

Table S7977.  Gene #734: 'HELQ MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
HELQ MUTATED 3 1 1
HELQ WILD-TYPE 48 82 76
'HELQ MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00516 (Fisher's exact test), Q value = 0.065

Table S7978.  Gene #734: 'HELQ MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
HELQ MUTATED 15 2 3 0
HELQ WILD-TYPE 163 181 98 20

Figure S2280.  Get High-res Image Gene #734: 'HELQ MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'HELQ MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.531 (Fisher's exact test), Q value = 0.85

Table S7979.  Gene #734: 'HELQ MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
HELQ MUTATED 3 6 6
HELQ WILD-TYPE 84 74 94
'HELQ MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.222 (Fisher's exact test), Q value = 0.54

Table S7980.  Gene #734: 'HELQ MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
HELQ MUTATED 1 9 6
HELQ WILD-TYPE 88 151 132
'HELQ MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0538 (Fisher's exact test), Q value = 0.25

Table S7981.  Gene #734: 'HELQ MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
HELQ MUTATED 7 9 0
HELQ WILD-TYPE 175 124 72
'HELQ MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.802 (Fisher's exact test), Q value = 1

Table S7982.  Gene #734: 'HELQ MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
HELQ MUTATED 5 4 5 6
HELQ WILD-TYPE 107 92 87 180
'HELQ MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00202 (Fisher's exact test), Q value = 0.038

Table S7983.  Gene #734: 'HELQ MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
HELQ MUTATED 2 4 6 0 3 0 5
HELQ WILD-TYPE 58 46 43 40 60 125 94

Figure S2281.  Get High-res Image Gene #734: 'HELQ MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'HELQ MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.284 (Fisher's exact test), Q value = 0.61

Table S7984.  Gene #734: 'HELQ MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
HELQ MUTATED 9 2 1 7
HELQ WILD-TYPE 121 76 67 189
'HELQ MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0254 (Fisher's exact test), Q value = 0.16

Table S7985.  Gene #734: 'HELQ MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
HELQ MUTATED 2 4 3 0 6 0 2 0 2
HELQ WILD-TYPE 38 58 25 80 63 48 41 28 72

Figure S2282.  Get High-res Image Gene #734: 'HELQ MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'HELQ MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0126 (Fisher's exact test), Q value = 0.11

Table S7986.  Gene #734: 'HELQ MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
HELQ MUTATED 0 1 1 4
HELQ WILD-TYPE 33 30 26 15

Figure S2283.  Get High-res Image Gene #734: 'HELQ MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'HELQ MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.194 (Fisher's exact test), Q value = 0.5

Table S7987.  Gene #734: 'HELQ MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
HELQ MUTATED 2 1 3 0
HELQ WILD-TYPE 52 9 21 22
'ZNF799 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.377 (Fisher's exact test), Q value = 0.71

Table S7988.  Gene #735: 'ZNF799 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ZNF799 MUTATED 3 1 3 0
ZNF799 WILD-TYPE 175 182 98 20
'ZNF799 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.865 (Fisher's exact test), Q value = 1

Table S7989.  Gene #735: 'ZNF799 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ZNF799 MUTATED 1 2 2
ZNF799 WILD-TYPE 86 78 98
'ZNF799 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.16 (Fisher's exact test), Q value = 0.45

Table S7990.  Gene #735: 'ZNF799 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ZNF799 MUTATED 0 5 1
ZNF799 WILD-TYPE 89 155 137
'ZNF799 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0178 (Fisher's exact test), Q value = 0.13

Table S7991.  Gene #735: 'ZNF799 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ZNF799 MUTATED 0 5 1
ZNF799 WILD-TYPE 182 128 71

Figure S2284.  Get High-res Image Gene #735: 'ZNF799 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'ZNF799 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.313 (Fisher's exact test), Q value = 0.64

Table S7992.  Gene #735: 'ZNF799 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ZNF799 MUTATED 2 3 0 2
ZNF799 WILD-TYPE 110 93 92 184
'ZNF799 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00785 (Fisher's exact test), Q value = 0.083

Table S7993.  Gene #735: 'ZNF799 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ZNF799 MUTATED 3 3 0 0 0 0 1
ZNF799 WILD-TYPE 57 47 49 40 63 125 98

Figure S2285.  Get High-res Image Gene #735: 'ZNF799 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ZNF799 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.661 (Fisher's exact test), Q value = 0.95

Table S7994.  Gene #735: 'ZNF799 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ZNF799 MUTATED 3 0 1 3
ZNF799 WILD-TYPE 127 78 67 193
'ZNF799 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0557 (Fisher's exact test), Q value = 0.26

Table S7995.  Gene #735: 'ZNF799 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ZNF799 MUTATED 1 0 3 1 1 0 0 0 1
ZNF799 WILD-TYPE 39 62 25 79 68 48 43 28 73
'CACHD1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00359 (Fisher's exact test), Q value = 0.055

Table S7996.  Gene #736: 'CACHD1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
CACHD1 MUTATED 6 2 0 5
CACHD1 WILD-TYPE 40 56 64 38

Figure S2286.  Get High-res Image Gene #736: 'CACHD1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'CACHD1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.19 (Fisher's exact test), Q value = 0.49

Table S7997.  Gene #736: 'CACHD1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
CACHD1 MUTATED 6 4 3
CACHD1 WILD-TYPE 45 79 74
'CACHD1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0176 (Fisher's exact test), Q value = 0.13

Table S7998.  Gene #736: 'CACHD1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
CACHD1 MUTATED 18 5 4 0
CACHD1 WILD-TYPE 160 178 97 20

Figure S2287.  Get High-res Image Gene #736: 'CACHD1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'CACHD1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.182 (Fisher's exact test), Q value = 0.48

Table S7999.  Gene #736: 'CACHD1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
CACHD1 MUTATED 8 3 3
CACHD1 WILD-TYPE 79 77 97
'CACHD1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0424 (Fisher's exact test), Q value = 0.22

Table S8000.  Gene #736: 'CACHD1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
CACHD1 MUTATED 2 6 13
CACHD1 WILD-TYPE 87 154 125

Figure S2288.  Get High-res Image Gene #736: 'CACHD1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'CACHD1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.693 (Fisher's exact test), Q value = 0.97

Table S8001.  Gene #736: 'CACHD1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
CACHD1 MUTATED 12 6 3
CACHD1 WILD-TYPE 170 127 69
'CACHD1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.783 (Fisher's exact test), Q value = 1

Table S8002.  Gene #736: 'CACHD1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
CACHD1 MUTATED 5 4 5 13
CACHD1 WILD-TYPE 107 92 87 173
'CACHD1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0898 (Fisher's exact test), Q value = 0.33

Table S8003.  Gene #736: 'CACHD1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
CACHD1 MUTATED 5 3 5 1 1 3 9
CACHD1 WILD-TYPE 55 47 44 39 62 122 90
'CACHD1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.76 (Fisher's exact test), Q value = 1

Table S8004.  Gene #736: 'CACHD1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
CACHD1 MUTATED 8 3 2 12
CACHD1 WILD-TYPE 122 75 66 184
'CACHD1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.214 (Fisher's exact test), Q value = 0.52

Table S8005.  Gene #736: 'CACHD1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
CACHD1 MUTATED 4 3 2 4 7 1 3 0 1
CACHD1 WILD-TYPE 36 59 26 76 62 47 40 28 73
'CACHD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.303 (Fisher's exact test), Q value = 0.63

Table S8006.  Gene #736: 'CACHD1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
CACHD1 MUTATED 2 0 1 2
CACHD1 WILD-TYPE 31 31 26 17
'CACHD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S8007.  Gene #736: 'CACHD1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
CACHD1 MUTATED 3 0 1 1
CACHD1 WILD-TYPE 51 10 23 21
'CCDC93 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.256 (Fisher's exact test), Q value = 0.58

Table S8008.  Gene #737: 'CCDC93 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
CCDC93 MUTATED 2 0 1 2
CCDC93 WILD-TYPE 44 58 63 41
'CCDC93 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.37 (Fisher's exact test), Q value = 0.7

Table S8009.  Gene #737: 'CCDC93 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
CCDC93 MUTATED 0 2 3
CCDC93 WILD-TYPE 51 81 74
'CCDC93 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.482 (Fisher's exact test), Q value = 0.81

Table S8010.  Gene #737: 'CCDC93 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
CCDC93 MUTATED 7 4 1 0
CCDC93 WILD-TYPE 171 179 100 20
'CCDC93 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.635 (Fisher's exact test), Q value = 0.93

Table S8011.  Gene #737: 'CCDC93 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
CCDC93 MUTATED 2 1 4
CCDC93 WILD-TYPE 85 79 96
'CCDC93 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0664 (Fisher's exact test), Q value = 0.28

Table S8012.  Gene #737: 'CCDC93 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
CCDC93 MUTATED 0 8 3
CCDC93 WILD-TYPE 89 152 135
'CCDC93 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00439 (Fisher's exact test), Q value = 0.061

Table S8013.  Gene #737: 'CCDC93 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
CCDC93 MUTATED 2 9 0
CCDC93 WILD-TYPE 180 124 72

Figure S2289.  Get High-res Image Gene #737: 'CCDC93 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'CCDC93 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.556 (Fisher's exact test), Q value = 0.87

Table S8014.  Gene #737: 'CCDC93 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
CCDC93 MUTATED 2 4 1 5
CCDC93 WILD-TYPE 110 92 91 181
'CCDC93 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.718 (Fisher's exact test), Q value = 0.99

Table S8015.  Gene #737: 'CCDC93 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
CCDC93 MUTATED 2 1 3 1 1 2 2
CCDC93 WILD-TYPE 58 49 46 39 62 123 97
'CCDC93 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.951 (Fisher's exact test), Q value = 1

Table S8016.  Gene #737: 'CCDC93 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
CCDC93 MUTATED 4 2 1 5
CCDC93 WILD-TYPE 126 76 67 191
'CCDC93 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.297 (Fisher's exact test), Q value = 0.63

Table S8017.  Gene #737: 'CCDC93 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
CCDC93 MUTATED 2 1 2 1 4 0 1 0 1
CCDC93 WILD-TYPE 38 61 26 79 65 48 42 28 73
'SYNRG MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0221 (Fisher's exact test), Q value = 0.15

Table S8018.  Gene #738: 'SYNRG MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
SYNRG MUTATED 2 0 0 3
SYNRG WILD-TYPE 44 58 64 40

Figure S2290.  Get High-res Image Gene #738: 'SYNRG MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'SYNRG MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00063 (Fisher's exact test), Q value = 0.018

Table S8019.  Gene #738: 'SYNRG MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
SYNRG MUTATED 5 0 0
SYNRG WILD-TYPE 46 83 77

Figure S2291.  Get High-res Image Gene #738: 'SYNRG MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'SYNRG MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0108 (Fisher's exact test), Q value = 0.1

Table S8020.  Gene #738: 'SYNRG MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
SYNRG MUTATED 13 2 2 1
SYNRG WILD-TYPE 165 181 99 19

Figure S2292.  Get High-res Image Gene #738: 'SYNRG MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'SYNRG MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00535 (Fisher's exact test), Q value = 0.066

Table S8021.  Gene #738: 'SYNRG MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
SYNRG MUTATED 9 0 4
SYNRG WILD-TYPE 78 80 96

Figure S2293.  Get High-res Image Gene #738: 'SYNRG MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'SYNRG MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.124 (Fisher's exact test), Q value = 0.39

Table S8022.  Gene #738: 'SYNRG MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
SYNRG MUTATED 3 4 10
SYNRG WILD-TYPE 86 156 128
'SYNRG MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.157 (Fisher's exact test), Q value = 0.45

Table S8023.  Gene #738: 'SYNRG MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
SYNRG MUTATED 12 4 1
SYNRG WILD-TYPE 170 129 71
'SYNRG MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.23 (Fisher's exact test), Q value = 0.55

Table S8024.  Gene #738: 'SYNRG MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
SYNRG MUTATED 2 6 5 5
SYNRG WILD-TYPE 110 90 87 181
'SYNRG MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.083 (Fisher's exact test), Q value = 0.31

Table S8025.  Gene #738: 'SYNRG MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
SYNRG MUTATED 1 2 5 2 2 1 5
SYNRG WILD-TYPE 59 48 44 38 61 124 94
'SYNRG MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.584 (Fisher's exact test), Q value = 0.89

Table S8026.  Gene #738: 'SYNRG MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
SYNRG MUTATED 5 5 2 6
SYNRG WILD-TYPE 125 73 66 190
'SYNRG MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0163 (Fisher's exact test), Q value = 0.13

Table S8027.  Gene #738: 'SYNRG MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
SYNRG MUTATED 2 5 0 1 5 0 4 1 0
SYNRG WILD-TYPE 38 57 28 79 64 48 39 27 74

Figure S2294.  Get High-res Image Gene #738: 'SYNRG MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'SYNRG MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.293 (Fisher's exact test), Q value = 0.62

Table S8028.  Gene #738: 'SYNRG MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
SYNRG MUTATED 1 1 2 3
SYNRG WILD-TYPE 32 30 25 16
'SYNRG MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.729 (Fisher's exact test), Q value = 1

Table S8029.  Gene #738: 'SYNRG MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
SYNRG MUTATED 3 1 2 1
SYNRG WILD-TYPE 51 9 22 21
'TRIM33 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00679 (Fisher's exact test), Q value = 0.076

Table S8030.  Gene #739: 'TRIM33 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
TRIM33 MUTATED 1 1 0 5
TRIM33 WILD-TYPE 45 57 64 38

Figure S2295.  Get High-res Image Gene #739: 'TRIM33 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'TRIM33 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.305 (Fisher's exact test), Q value = 0.63

Table S8031.  Gene #739: 'TRIM33 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
TRIM33 MUTATED 3 1 3
TRIM33 WILD-TYPE 48 82 74
'TRIM33 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0139 (Fisher's exact test), Q value = 0.12

Table S8032.  Gene #739: 'TRIM33 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
TRIM33 MUTATED 14 4 1 1
TRIM33 WILD-TYPE 164 179 100 19

Figure S2296.  Get High-res Image Gene #739: 'TRIM33 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'TRIM33 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.722 (Fisher's exact test), Q value = 0.99

Table S8033.  Gene #739: 'TRIM33 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
TRIM33 MUTATED 3 4 6
TRIM33 WILD-TYPE 84 76 94
'TRIM33 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.138 (Fisher's exact test), Q value = 0.41

Table S8034.  Gene #739: 'TRIM33 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
TRIM33 MUTATED 1 9 9
TRIM33 WILD-TYPE 88 151 129
'TRIM33 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.743 (Fisher's exact test), Q value = 1

Table S8035.  Gene #739: 'TRIM33 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
TRIM33 MUTATED 10 7 2
TRIM33 WILD-TYPE 172 126 70
'TRIM33 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.325 (Fisher's exact test), Q value = 0.65

Table S8036.  Gene #739: 'TRIM33 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
TRIM33 MUTATED 5 7 3 5
TRIM33 WILD-TYPE 107 89 89 181
'TRIM33 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00016 (Fisher's exact test), Q value = 0.0072

Table S8037.  Gene #739: 'TRIM33 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
TRIM33 MUTATED 4 1 9 0 0 2 4
TRIM33 WILD-TYPE 56 49 40 40 63 123 95

Figure S2297.  Get High-res Image Gene #739: 'TRIM33 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'TRIM33 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.399 (Fisher's exact test), Q value = 0.72

Table S8038.  Gene #739: 'TRIM33 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
TRIM33 MUTATED 8 1 2 8
TRIM33 WILD-TYPE 122 77 66 188
'TRIM33 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00657 (Fisher's exact test), Q value = 0.074

Table S8039.  Gene #739: 'TRIM33 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
TRIM33 MUTATED 1 2 1 2 10 2 1 0 0
TRIM33 WILD-TYPE 39 60 27 78 59 46 42 28 74

Figure S2298.  Get High-res Image Gene #739: 'TRIM33 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'TRIM33 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.06 (Fisher's exact test), Q value = 0.27

Table S8040.  Gene #739: 'TRIM33 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
TRIM33 MUTATED 0 0 1 2
TRIM33 WILD-TYPE 33 31 26 17
'TRIM33 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0271 (Fisher's exact test), Q value = 0.17

Table S8041.  Gene #739: 'TRIM33 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
TRIM33 MUTATED 0 0 3 0
TRIM33 WILD-TYPE 54 10 21 22

Figure S2299.  Get High-res Image Gene #739: 'TRIM33 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

'LPIN2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.312 (Fisher's exact test), Q value = 0.64

Table S8042.  Gene #740: 'LPIN2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
LPIN2 MUTATED 1 1 0 2
LPIN2 WILD-TYPE 45 57 64 41
'LPIN2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.456 (Fisher's exact test), Q value = 0.78

Table S8043.  Gene #740: 'LPIN2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
LPIN2 MUTATED 0 3 1
LPIN2 WILD-TYPE 51 80 76
'LPIN2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0305 (Fisher's exact test), Q value = 0.18

Table S8044.  Gene #740: 'LPIN2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
LPIN2 MUTATED 7 0 3 0
LPIN2 WILD-TYPE 171 183 98 20

Figure S2300.  Get High-res Image Gene #740: 'LPIN2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'LPIN2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.328 (Fisher's exact test), Q value = 0.66

Table S8045.  Gene #740: 'LPIN2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
LPIN2 MUTATED 4 1 1
LPIN2 WILD-TYPE 83 79 99
'LPIN2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.176 (Fisher's exact test), Q value = 0.48

Table S8046.  Gene #740: 'LPIN2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
LPIN2 MUTATED 0 3 5
LPIN2 WILD-TYPE 89 157 133
'LPIN2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.511 (Fisher's exact test), Q value = 0.83

Table S8047.  Gene #740: 'LPIN2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
LPIN2 MUTATED 4 4 0
LPIN2 WILD-TYPE 178 129 72
'LPIN2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.519 (Fisher's exact test), Q value = 0.84

Table S8048.  Gene #740: 'LPIN2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
LPIN2 MUTATED 1 3 3 3
LPIN2 WILD-TYPE 111 93 89 183
'LPIN2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.448 (Fisher's exact test), Q value = 0.77

Table S8049.  Gene #740: 'LPIN2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
LPIN2 MUTATED 2 1 3 0 1 2 1
LPIN2 WILD-TYPE 58 49 46 40 62 123 98
'LPIN2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.701 (Fisher's exact test), Q value = 0.97

Table S8050.  Gene #740: 'LPIN2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
LPIN2 MUTATED 3 2 0 5
LPIN2 WILD-TYPE 127 76 68 191
'LPIN2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.877 (Fisher's exact test), Q value = 1

Table S8051.  Gene #740: 'LPIN2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
LPIN2 MUTATED 0 3 1 2 1 1 1 0 1
LPIN2 WILD-TYPE 40 59 27 78 68 47 42 28 73
'ING1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.221 (Fisher's exact test), Q value = 0.53

Table S8052.  Gene #741: 'ING1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ING1 MUTATED 2 1 0 2
ING1 WILD-TYPE 44 57 64 41
'ING1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.738 (Fisher's exact test), Q value = 1

Table S8053.  Gene #741: 'ING1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ING1 MUTATED 2 2 1
ING1 WILD-TYPE 49 81 76
'ING1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.567 (Fisher's exact test), Q value = 0.87

Table S8054.  Gene #741: 'ING1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ING1 MUTATED 7 3 2 0
ING1 WILD-TYPE 171 180 99 20
'ING1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0526 (Fisher's exact test), Q value = 0.25

Table S8055.  Gene #741: 'ING1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ING1 MUTATED 0 1 5
ING1 WILD-TYPE 87 79 95
'ING1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S8056.  Gene #741: 'ING1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ING1 MUTATED 2 4 3
ING1 WILD-TYPE 87 156 135
'ING1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S8057.  Gene #741: 'ING1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ING1 MUTATED 5 3 1
ING1 WILD-TYPE 177 130 71
'ING1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.234 (Fisher's exact test), Q value = 0.55

Table S8058.  Gene #741: 'ING1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ING1 MUTATED 1 5 1 5
ING1 WILD-TYPE 111 91 91 181
'ING1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.432 (Fisher's exact test), Q value = 0.76

Table S8059.  Gene #741: 'ING1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ING1 MUTATED 0 1 3 1 1 2 4
ING1 WILD-TYPE 60 49 46 39 62 123 95
'ING1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.314 (Fisher's exact test), Q value = 0.64

Table S8060.  Gene #741: 'ING1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ING1 MUTATED 4 0 3 5
ING1 WILD-TYPE 126 78 65 191
'ING1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.144 (Fisher's exact test), Q value = 0.42

Table S8061.  Gene #741: 'ING1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ING1 MUTATED 1 0 3 1 3 0 1 1 2
ING1 WILD-TYPE 39 62 25 79 66 48 42 27 72
'TAB3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0639 (Fisher's exact test), Q value = 0.27

Table S8062.  Gene #742: 'TAB3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
TAB3 MUTATED 1 0 0 2
TAB3 WILD-TYPE 45 58 64 41
'TAB3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.185 (Fisher's exact test), Q value = 0.49

Table S8063.  Gene #742: 'TAB3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
TAB3 MUTATED 2 0 1
TAB3 WILD-TYPE 49 83 76
'TAB3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.107 (Fisher's exact test), Q value = 0.36

Table S8064.  Gene #742: 'TAB3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
TAB3 MUTATED 5 2 6 0
TAB3 WILD-TYPE 173 181 95 20
'TAB3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.16 (Fisher's exact test), Q value = 0.45

Table S8065.  Gene #742: 'TAB3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
TAB3 MUTATED 5 3 1
TAB3 WILD-TYPE 82 77 99
'TAB3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.91 (Fisher's exact test), Q value = 1

Table S8066.  Gene #742: 'TAB3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
TAB3 MUTATED 2 3 4
TAB3 WILD-TYPE 87 157 134
'TAB3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.909 (Fisher's exact test), Q value = 1

Table S8067.  Gene #742: 'TAB3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
TAB3 MUTATED 4 3 2
TAB3 WILD-TYPE 178 130 70
'TAB3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.445 (Fisher's exact test), Q value = 0.77

Table S8068.  Gene #742: 'TAB3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
TAB3 MUTATED 4 1 4 4
TAB3 WILD-TYPE 108 95 88 182
'TAB3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0475 (Fisher's exact test), Q value = 0.23

Table S8069.  Gene #742: 'TAB3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
TAB3 MUTATED 0 2 2 2 3 0 4
TAB3 WILD-TYPE 60 48 47 38 60 125 95

Figure S2301.  Get High-res Image Gene #742: 'TAB3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'TAB3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.349 (Fisher's exact test), Q value = 0.68

Table S8070.  Gene #742: 'TAB3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
TAB3 MUTATED 4 4 1 3
TAB3 WILD-TYPE 126 74 67 193
'TAB3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.183 (Fisher's exact test), Q value = 0.48

Table S8071.  Gene #742: 'TAB3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
TAB3 MUTATED 0 3 2 4 2 0 1 0 0
TAB3 WILD-TYPE 40 59 26 76 67 48 42 28 74
'TAB3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.244 (Fisher's exact test), Q value = 0.57

Table S8072.  Gene #742: 'TAB3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
TAB3 MUTATED 0 2 1 2
TAB3 WILD-TYPE 33 29 26 17
'TAB3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.758 (Fisher's exact test), Q value = 1

Table S8073.  Gene #742: 'TAB3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
TAB3 MUTATED 4 0 1 0
TAB3 WILD-TYPE 50 10 23 22
'ZFP3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00138 (Fisher's exact test), Q value = 0.03

Table S8074.  Gene #743: 'ZFP3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ZFP3 MUTATED 3 0 0 5
ZFP3 WILD-TYPE 43 58 64 38

Figure S2302.  Get High-res Image Gene #743: 'ZFP3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'ZFP3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0485 (Fisher's exact test), Q value = 0.24

Table S8075.  Gene #743: 'ZFP3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ZFP3 MUTATED 5 1 2
ZFP3 WILD-TYPE 46 82 75

Figure S2303.  Get High-res Image Gene #743: 'ZFP3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'ZFP3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00212 (Fisher's exact test), Q value = 0.039

Table S8076.  Gene #743: 'ZFP3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ZFP3 MUTATED 11 1 0 0
ZFP3 WILD-TYPE 167 182 101 20

Figure S2304.  Get High-res Image Gene #743: 'ZFP3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ZFP3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.556 (Fisher's exact test), Q value = 0.87

Table S8077.  Gene #743: 'ZFP3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ZFP3 MUTATED 2 0 2
ZFP3 WILD-TYPE 85 80 98
'ZFP3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0352 (Fisher's exact test), Q value = 0.19

Table S8078.  Gene #743: 'ZFP3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ZFP3 MUTATED 0 8 2
ZFP3 WILD-TYPE 89 152 136

Figure S2305.  Get High-res Image Gene #743: 'ZFP3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'ZFP3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.637 (Fisher's exact test), Q value = 0.93

Table S8079.  Gene #743: 'ZFP3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ZFP3 MUTATED 4 5 1
ZFP3 WILD-TYPE 178 128 71
'ZFP3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0794 (Fisher's exact test), Q value = 0.3

Table S8080.  Gene #743: 'ZFP3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ZFP3 MUTATED 0 3 1 8
ZFP3 WILD-TYPE 112 93 91 178
'ZFP3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.01 (Fisher's exact test), Q value = 0.095

Table S8081.  Gene #743: 'ZFP3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ZFP3 MUTATED 1 1 1 0 1 0 8
ZFP3 WILD-TYPE 59 49 48 40 62 125 91

Figure S2306.  Get High-res Image Gene #743: 'ZFP3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ZFP3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.164 (Fisher's exact test), Q value = 0.46

Table S8082.  Gene #743: 'ZFP3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ZFP3 MUTATED 1 1 1 9
ZFP3 WILD-TYPE 129 77 67 187
'ZFP3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0769 (Fisher's exact test), Q value = 0.3

Table S8083.  Gene #743: 'ZFP3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ZFP3 MUTATED 1 1 2 0 5 0 1 1 1
ZFP3 WILD-TYPE 39 61 26 80 64 48 42 27 73
'ULK1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0683 (Fisher's exact test), Q value = 0.28

Table S8084.  Gene #744: 'ULK1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ULK1 MUTATED 8 1 2 0
ULK1 WILD-TYPE 170 182 99 20
'ULK1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0194 (Fisher's exact test), Q value = 0.14

Table S8085.  Gene #744: 'ULK1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ULK1 MUTATED 3 0 8
ULK1 WILD-TYPE 84 80 92

Figure S2307.  Get High-res Image Gene #744: 'ULK1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'ULK1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.206 (Fisher's exact test), Q value = 0.51

Table S8086.  Gene #744: 'ULK1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ULK1 MUTATED 0 5 5
ULK1 WILD-TYPE 89 155 133
'ULK1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.918 (Fisher's exact test), Q value = 1

Table S8087.  Gene #744: 'ULK1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ULK1 MUTATED 5 4 1
ULK1 WILD-TYPE 177 129 71
'ULK1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00208 (Fisher's exact test), Q value = 0.038

Table S8088.  Gene #744: 'ULK1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ULK1 MUTATED 2 6 3 0
ULK1 WILD-TYPE 110 90 89 186

Figure S2308.  Get High-res Image Gene #744: 'ULK1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'ULK1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-04 (Fisher's exact test), Q value = 0.0052

Table S8089.  Gene #744: 'ULK1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ULK1 MUTATED 1 2 6 1 1 0 0
ULK1 WILD-TYPE 59 48 43 39 62 125 99

Figure S2309.  Get High-res Image Gene #744: 'ULK1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ULK1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.171 (Fisher's exact test), Q value = 0.47

Table S8090.  Gene #744: 'ULK1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ULK1 MUTATED 6 2 0 3
ULK1 WILD-TYPE 124 76 68 193
'ULK1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.483 (Fisher's exact test), Q value = 0.81

Table S8091.  Gene #744: 'ULK1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ULK1 MUTATED 2 2 1 2 3 0 1 0 0
ULK1 WILD-TYPE 38 60 27 78 66 48 42 28 74
'CLDN10 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.787 (Fisher's exact test), Q value = 1

Table S8092.  Gene #745: 'CLDN10 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
CLDN10 MUTATED 1 0 1 1
CLDN10 WILD-TYPE 45 58 63 42
'CLDN10 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.348 (Fisher's exact test), Q value = 0.68

Table S8093.  Gene #745: 'CLDN10 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
CLDN10 MUTATED 1 0 2
CLDN10 WILD-TYPE 50 83 75
'CLDN10 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00853 (Fisher's exact test), Q value = 0.086

Table S8094.  Gene #745: 'CLDN10 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
CLDN10 MUTATED 11 1 1 0
CLDN10 WILD-TYPE 167 182 100 20

Figure S2310.  Get High-res Image Gene #745: 'CLDN10 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'CLDN10 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.308 (Fisher's exact test), Q value = 0.64

Table S8095.  Gene #745: 'CLDN10 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
CLDN10 MUTATED 5 1 4
CLDN10 WILD-TYPE 82 79 96
'CLDN10 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.561 (Fisher's exact test), Q value = 0.87

Table S8096.  Gene #745: 'CLDN10 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
CLDN10 MUTATED 2 7 3
CLDN10 WILD-TYPE 87 153 135
'CLDN10 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.263 (Fisher's exact test), Q value = 0.59

Table S8097.  Gene #745: 'CLDN10 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
CLDN10 MUTATED 4 7 1
CLDN10 WILD-TYPE 178 126 71
'CLDN10 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.674 (Fisher's exact test), Q value = 0.96

Table S8098.  Gene #745: 'CLDN10 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
CLDN10 MUTATED 2 4 3 4
CLDN10 WILD-TYPE 110 92 89 182
'CLDN10 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00235 (Fisher's exact test), Q value = 0.042

Table S8099.  Gene #745: 'CLDN10 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
CLDN10 MUTATED 3 1 5 0 0 0 4
CLDN10 WILD-TYPE 57 49 44 40 63 125 95

Figure S2311.  Get High-res Image Gene #745: 'CLDN10 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CLDN10 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.747 (Fisher's exact test), Q value = 1

Table S8100.  Gene #745: 'CLDN10 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
CLDN10 MUTATED 5 1 2 5
CLDN10 WILD-TYPE 125 77 66 191
'CLDN10 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.217 (Fisher's exact test), Q value = 0.53

Table S8101.  Gene #745: 'CLDN10 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
CLDN10 MUTATED 0 3 1 0 5 1 1 0 2
CLDN10 WILD-TYPE 40 59 27 80 64 47 42 28 72
'CLDN10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.136 (Fisher's exact test), Q value = 0.41

Table S8102.  Gene #745: 'CLDN10 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
CLDN10 MUTATED 1 0 0 2
CLDN10 WILD-TYPE 32 31 27 17
'CLDN10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S8103.  Gene #745: 'CLDN10 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
CLDN10 MUTATED 2 0 1 0
CLDN10 WILD-TYPE 52 10 23 22
'RHPN2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0229 (Fisher's exact test), Q value = 0.15

Table S8104.  Gene #746: 'RHPN2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
RHPN2 MUTATED 2 0 0 3
RHPN2 WILD-TYPE 44 58 64 40

Figure S2312.  Get High-res Image Gene #746: 'RHPN2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'RHPN2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.637 (Fisher's exact test), Q value = 0.93

Table S8105.  Gene #746: 'RHPN2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
RHPN2 MUTATED 2 1 2
RHPN2 WILD-TYPE 49 82 75
'RHPN2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.159 (Fisher's exact test), Q value = 0.45

Table S8106.  Gene #746: 'RHPN2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
RHPN2 MUTATED 10 3 5 0
RHPN2 WILD-TYPE 168 180 96 20
'RHPN2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.676 (Fisher's exact test), Q value = 0.96

Table S8107.  Gene #746: 'RHPN2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
RHPN2 MUTATED 3 5 5
RHPN2 WILD-TYPE 84 75 95
'RHPN2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.46 (Fisher's exact test), Q value = 0.79

Table S8108.  Gene #746: 'RHPN2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
RHPN2 MUTATED 2 9 5
RHPN2 WILD-TYPE 87 151 133
'RHPN2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.75 (Fisher's exact test), Q value = 1

Table S8109.  Gene #746: 'RHPN2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
RHPN2 MUTATED 7 7 2
RHPN2 WILD-TYPE 175 126 70
'RHPN2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.531 (Fisher's exact test), Q value = 0.85

Table S8110.  Gene #746: 'RHPN2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
RHPN2 MUTATED 4 6 3 5
RHPN2 WILD-TYPE 108 90 89 181
'RHPN2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0473 (Fisher's exact test), Q value = 0.23

Table S8111.  Gene #746: 'RHPN2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
RHPN2 MUTATED 3 5 2 3 1 1 3
RHPN2 WILD-TYPE 57 45 47 37 62 124 96

Figure S2313.  Get High-res Image Gene #746: 'RHPN2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'RHPN2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0132 (Fisher's exact test), Q value = 0.11

Table S8112.  Gene #746: 'RHPN2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
RHPN2 MUTATED 11 2 0 5
RHPN2 WILD-TYPE 119 76 68 191

Figure S2314.  Get High-res Image Gene #746: 'RHPN2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'RHPN2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0096 (Fisher's exact test), Q value = 0.093

Table S8113.  Gene #746: 'RHPN2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
RHPN2 MUTATED 5 2 2 0 3 2 3 1 0
RHPN2 WILD-TYPE 35 60 26 80 66 46 40 27 74

Figure S2315.  Get High-res Image Gene #746: 'RHPN2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'IL1RL1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.318 (Fisher's exact test), Q value = 0.65

Table S8114.  Gene #747: 'IL1RL1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
IL1RL1 MUTATED 9 4 2 1
IL1RL1 WILD-TYPE 169 179 99 19
'IL1RL1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.092 (Fisher's exact test), Q value = 0.33

Table S8115.  Gene #747: 'IL1RL1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
IL1RL1 MUTATED 8 2 3
IL1RL1 WILD-TYPE 79 78 97
'IL1RL1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.605 (Fisher's exact test), Q value = 0.91

Table S8116.  Gene #747: 'IL1RL1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
IL1RL1 MUTATED 2 5 7
IL1RL1 WILD-TYPE 87 155 131
'IL1RL1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.455 (Fisher's exact test), Q value = 0.78

Table S8117.  Gene #747: 'IL1RL1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
IL1RL1 MUTATED 9 3 2
IL1RL1 WILD-TYPE 173 130 70
'IL1RL1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.054 (Fisher's exact test), Q value = 0.25

Table S8118.  Gene #747: 'IL1RL1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
IL1RL1 MUTATED 2 4 7 3
IL1RL1 WILD-TYPE 110 92 85 183
'IL1RL1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00018 (Fisher's exact test), Q value = 0.0078

Table S8119.  Gene #747: 'IL1RL1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
IL1RL1 MUTATED 4 0 7 1 2 0 2
IL1RL1 WILD-TYPE 56 50 42 39 61 125 97

Figure S2316.  Get High-res Image Gene #747: 'IL1RL1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'IL1RL1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0526 (Fisher's exact test), Q value = 0.25

Table S8120.  Gene #747: 'IL1RL1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
IL1RL1 MUTATED 6 6 1 3
IL1RL1 WILD-TYPE 124 72 67 193
'IL1RL1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.044 (Fisher's exact test), Q value = 0.22

Table S8121.  Gene #747: 'IL1RL1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
IL1RL1 MUTATED 2 6 0 2 4 0 2 0 0
IL1RL1 WILD-TYPE 38 56 28 78 65 48 41 28 74

Figure S2317.  Get High-res Image Gene #747: 'IL1RL1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'IL1RL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.175 (Fisher's exact test), Q value = 0.47

Table S8122.  Gene #747: 'IL1RL1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
IL1RL1 MUTATED 4 1 0 2
IL1RL1 WILD-TYPE 29 30 27 17
'IL1RL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.341 (Fisher's exact test), Q value = 0.67

Table S8123.  Gene #747: 'IL1RL1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
IL1RL1 MUTATED 6 0 1 0
IL1RL1 WILD-TYPE 48 10 23 22
'TOX MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0455 (Fisher's exact test), Q value = 0.23

Table S8124.  Gene #748: 'TOX MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
TOX MUTATED 4 0 2 4
TOX WILD-TYPE 42 58 62 39

Figure S2318.  Get High-res Image Gene #748: 'TOX MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'TOX MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.186 (Fisher's exact test), Q value = 0.49

Table S8125.  Gene #748: 'TOX MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
TOX MUTATED 5 2 3
TOX WILD-TYPE 46 81 74
'TOX MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0269 (Fisher's exact test), Q value = 0.17

Table S8126.  Gene #748: 'TOX MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
TOX MUTATED 13 4 1 0
TOX WILD-TYPE 165 179 100 20

Figure S2319.  Get High-res Image Gene #748: 'TOX MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'TOX MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.494 (Fisher's exact test), Q value = 0.82

Table S8127.  Gene #748: 'TOX MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
TOX MUTATED 4 1 3
TOX WILD-TYPE 83 79 97
'TOX MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.435 (Fisher's exact test), Q value = 0.76

Table S8128.  Gene #748: 'TOX MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
TOX MUTATED 2 6 8
TOX WILD-TYPE 87 154 130
'TOX MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.398 (Fisher's exact test), Q value = 0.72

Table S8129.  Gene #748: 'TOX MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
TOX MUTATED 5 7 4
TOX WILD-TYPE 177 126 68
'TOX MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.324 (Fisher's exact test), Q value = 0.65

Table S8130.  Gene #748: 'TOX MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
TOX MUTATED 3 4 1 10
TOX WILD-TYPE 109 92 91 176
'TOX MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0398 (Fisher's exact test), Q value = 0.21

Table S8131.  Gene #748: 'TOX MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
TOX MUTATED 1 4 2 1 0 2 8
TOX WILD-TYPE 59 46 47 39 63 123 91

Figure S2320.  Get High-res Image Gene #748: 'TOX MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'TOX MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.175 (Fisher's exact test), Q value = 0.47

Table S8132.  Gene #748: 'TOX MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
TOX MUTATED 2 1 3 11
TOX WILD-TYPE 128 77 65 185
'TOX MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.24 (Fisher's exact test), Q value = 0.56

Table S8133.  Gene #748: 'TOX MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
TOX MUTATED 0 1 1 2 7 1 2 0 3
TOX WILD-TYPE 40 61 27 78 62 47 41 28 71
'TOX MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.168 (Fisher's exact test), Q value = 0.46

Table S8134.  Gene #748: 'TOX MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
TOX MUTATED 0 0 2 1
TOX WILD-TYPE 33 31 25 18
'TOX MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.446 (Fisher's exact test), Q value = 0.77

Table S8135.  Gene #748: 'TOX MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
TOX MUTATED 1 0 2 0
TOX WILD-TYPE 53 10 22 22
'SNX2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.818 (Fisher's exact test), Q value = 1

Table S8136.  Gene #749: 'SNX2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
SNX2 MUTATED 1 1 1 2
SNX2 WILD-TYPE 45 57 63 41
'SNX2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.846 (Fisher's exact test), Q value = 1

Table S8137.  Gene #749: 'SNX2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
SNX2 MUTATED 1 3 1
SNX2 WILD-TYPE 50 80 76
'SNX2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0308 (Fisher's exact test), Q value = 0.18

Table S8138.  Gene #749: 'SNX2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
SNX2 MUTATED 10 2 1 1
SNX2 WILD-TYPE 168 181 100 19

Figure S2321.  Get High-res Image Gene #749: 'SNX2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'SNX2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0951 (Fisher's exact test), Q value = 0.34

Table S8139.  Gene #749: 'SNX2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
SNX2 MUTATED 5 0 4
SNX2 WILD-TYPE 82 80 96
'SNX2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.366 (Fisher's exact test), Q value = 0.7

Table S8140.  Gene #749: 'SNX2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
SNX2 MUTATED 1 7 6
SNX2 WILD-TYPE 88 153 132
'SNX2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S8141.  Gene #749: 'SNX2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
SNX2 MUTATED 7 5 2
SNX2 WILD-TYPE 175 128 70
'SNX2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0869 (Fisher's exact test), Q value = 0.32

Table S8142.  Gene #749: 'SNX2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
SNX2 MUTATED 1 1 6 6
SNX2 WILD-TYPE 111 95 86 180
'SNX2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.47 (Fisher's exact test), Q value = 0.8

Table S8143.  Gene #749: 'SNX2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
SNX2 MUTATED 2 1 4 1 1 2 3
SNX2 WILD-TYPE 58 49 45 39 62 123 96
'SNX2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.871 (Fisher's exact test), Q value = 1

Table S8144.  Gene #749: 'SNX2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
SNX2 MUTATED 5 2 1 6
SNX2 WILD-TYPE 125 76 67 190
'SNX2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.229 (Fisher's exact test), Q value = 0.55

Table S8145.  Gene #749: 'SNX2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
SNX2 MUTATED 0 3 2 0 4 2 1 0 2
SNX2 WILD-TYPE 40 59 26 80 65 46 42 28 72
'SNX2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.779 (Fisher's exact test), Q value = 1

Table S8146.  Gene #749: 'SNX2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
SNX2 MUTATED 1 0 1 1
SNX2 WILD-TYPE 32 31 26 18
'SNX2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S8147.  Gene #749: 'SNX2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
SNX2 MUTATED 2 0 1 0
SNX2 WILD-TYPE 52 10 23 22
'HDAC5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.081 (Fisher's exact test), Q value = 0.31

Table S8148.  Gene #750: 'HDAC5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
HDAC5 MUTATED 9 2 1 0
HDAC5 WILD-TYPE 169 181 100 20
'HDAC5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.306 (Fisher's exact test), Q value = 0.64

Table S8149.  Gene #750: 'HDAC5 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
HDAC5 MUTATED 5 1 4
HDAC5 WILD-TYPE 82 79 96
'HDAC5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.388 (Fisher's exact test), Q value = 0.72

Table S8150.  Gene #750: 'HDAC5 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
HDAC5 MUTATED 1 4 6
HDAC5 WILD-TYPE 88 156 132
'HDAC5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.85 (Fisher's exact test), Q value = 1

Table S8151.  Gene #750: 'HDAC5 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
HDAC5 MUTATED 6 4 1
HDAC5 WILD-TYPE 176 129 71
'HDAC5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.149 (Fisher's exact test), Q value = 0.43

Table S8152.  Gene #750: 'HDAC5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
HDAC5 MUTATED 2 3 5 2
HDAC5 WILD-TYPE 110 93 87 184
'HDAC5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 6e-05 (Fisher's exact test), Q value = 0.0037

Table S8153.  Gene #750: 'HDAC5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
HDAC5 MUTATED 1 1 7 2 0 0 1
HDAC5 WILD-TYPE 59 49 42 38 63 125 98

Figure S2322.  Get High-res Image Gene #750: 'HDAC5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'HDAC5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.125 (Fisher's exact test), Q value = 0.39

Table S8154.  Gene #750: 'HDAC5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
HDAC5 MUTATED 5 4 0 3
HDAC5 WILD-TYPE 125 74 68 193
'HDAC5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00568 (Fisher's exact test), Q value = 0.068

Table S8155.  Gene #750: 'HDAC5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
HDAC5 MUTATED 1 6 0 0 4 1 0 0 0
HDAC5 WILD-TYPE 39 56 28 80 65 47 43 28 74

Figure S2323.  Get High-res Image Gene #750: 'HDAC5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'HDAC5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0892 (Fisher's exact test), Q value = 0.32

Table S8156.  Gene #750: 'HDAC5 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
HDAC5 MUTATED 1 1 0 3
HDAC5 WILD-TYPE 32 30 27 16
'HDAC5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.755 (Fisher's exact test), Q value = 1

Table S8157.  Gene #750: 'HDAC5 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
HDAC5 MUTATED 4 0 1 0
HDAC5 WILD-TYPE 50 10 23 22
'IVNS1ABP MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.63 (Fisher's exact test), Q value = 0.93

Table S8158.  Gene #751: 'IVNS1ABP MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
IVNS1ABP MUTATED 1 1 0 1
IVNS1ABP WILD-TYPE 45 57 64 42
'IVNS1ABP MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.789 (Fisher's exact test), Q value = 1

Table S8159.  Gene #751: 'IVNS1ABP MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
IVNS1ABP MUTATED 0 2 1
IVNS1ABP WILD-TYPE 51 81 76
'IVNS1ABP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.369 (Fisher's exact test), Q value = 0.7

Table S8160.  Gene #751: 'IVNS1ABP MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
IVNS1ABP MUTATED 6 3 4 1
IVNS1ABP WILD-TYPE 172 180 97 19
'IVNS1ABP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S8161.  Gene #751: 'IVNS1ABP MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
IVNS1ABP MUTATED 4 4 4
IVNS1ABP WILD-TYPE 83 76 96
'IVNS1ABP MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.831 (Fisher's exact test), Q value = 1

Table S8162.  Gene #751: 'IVNS1ABP MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
IVNS1ABP MUTATED 1 4 4
IVNS1ABP WILD-TYPE 88 156 134
'IVNS1ABP MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.822 (Fisher's exact test), Q value = 1

Table S8163.  Gene #751: 'IVNS1ABP MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
IVNS1ABP MUTATED 4 4 1
IVNS1ABP WILD-TYPE 178 129 71
'IVNS1ABP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.165 (Fisher's exact test), Q value = 0.46

Table S8164.  Gene #751: 'IVNS1ABP MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
IVNS1ABP MUTATED 4 3 5 2
IVNS1ABP WILD-TYPE 108 93 87 184
'IVNS1ABP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0802 (Fisher's exact test), Q value = 0.31

Table S8165.  Gene #751: 'IVNS1ABP MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
IVNS1ABP MUTATED 3 1 2 2 4 2 0
IVNS1ABP WILD-TYPE 57 49 47 38 59 123 99
'IVNS1ABP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.333 (Fisher's exact test), Q value = 0.66

Table S8166.  Gene #751: 'IVNS1ABP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
IVNS1ABP MUTATED 5 4 2 3
IVNS1ABP WILD-TYPE 125 74 66 193
'IVNS1ABP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.262 (Fisher's exact test), Q value = 0.59

Table S8167.  Gene #751: 'IVNS1ABP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
IVNS1ABP MUTATED 2 3 3 3 1 1 0 0 1
IVNS1ABP WILD-TYPE 38 59 25 77 68 47 43 28 73
'SNRNP200 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.28 (Fisher's exact test), Q value = 0.61

Table S8168.  Gene #752: 'SNRNP200 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
SNRNP200 MUTATED 3 1 1 3
SNRNP200 WILD-TYPE 43 57 63 40
'SNRNP200 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.153 (Fisher's exact test), Q value = 0.44

Table S8169.  Gene #752: 'SNRNP200 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
SNRNP200 MUTATED 4 3 1
SNRNP200 WILD-TYPE 47 80 76
'SNRNP200 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0321 (Fisher's exact test), Q value = 0.18

Table S8170.  Gene #752: 'SNRNP200 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
SNRNP200 MUTATED 14 5 2 2
SNRNP200 WILD-TYPE 164 178 99 18

Figure S2324.  Get High-res Image Gene #752: 'SNRNP200 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'SNRNP200 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.171 (Fisher's exact test), Q value = 0.47

Table S8171.  Gene #752: 'SNRNP200 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
SNRNP200 MUTATED 8 2 5
SNRNP200 WILD-TYPE 79 78 95
'SNRNP200 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.116 (Fisher's exact test), Q value = 0.38

Table S8172.  Gene #752: 'SNRNP200 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
SNRNP200 MUTATED 2 6 11
SNRNP200 WILD-TYPE 87 154 127
'SNRNP200 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.471 (Fisher's exact test), Q value = 0.8

Table S8173.  Gene #752: 'SNRNP200 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
SNRNP200 MUTATED 8 9 2
SNRNP200 WILD-TYPE 174 124 70
'SNRNP200 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.152 (Fisher's exact test), Q value = 0.44

Table S8174.  Gene #752: 'SNRNP200 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
SNRNP200 MUTATED 3 8 6 6
SNRNP200 WILD-TYPE 109 88 86 180
'SNRNP200 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.266 (Fisher's exact test), Q value = 0.59

Table S8175.  Gene #752: 'SNRNP200 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
SNRNP200 MUTATED 4 4 1 3 4 2 5
SNRNP200 WILD-TYPE 56 46 48 37 59 123 94
'SNRNP200 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.144 (Fisher's exact test), Q value = 0.42

Table S8176.  Gene #752: 'SNRNP200 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
SNRNP200 MUTATED 8 5 0 9
SNRNP200 WILD-TYPE 122 73 68 187
'SNRNP200 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.733 (Fisher's exact test), Q value = 1

Table S8177.  Gene #752: 'SNRNP200 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
SNRNP200 MUTATED 2 4 1 5 5 2 2 0 1
SNRNP200 WILD-TYPE 38 58 27 75 64 46 41 28 73
'SNRNP200 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.346 (Fisher's exact test), Q value = 0.67

Table S8178.  Gene #752: 'SNRNP200 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
SNRNP200 MUTATED 1 2 0 2
SNRNP200 WILD-TYPE 32 29 27 17
'SNRNP200 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.47 (Fisher's exact test), Q value = 0.8

Table S8179.  Gene #752: 'SNRNP200 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
SNRNP200 MUTATED 3 0 0 2
SNRNP200 WILD-TYPE 51 10 24 20
'RFXAP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.401 (Fisher's exact test), Q value = 0.73

Table S8180.  Gene #753: 'RFXAP MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
RFXAP MUTATED 2 2 1 1
RFXAP WILD-TYPE 176 181 100 19
'RFXAP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0556 (Fisher's exact test), Q value = 0.26

Table S8181.  Gene #753: 'RFXAP MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
RFXAP MUTATED 4 1 0
RFXAP WILD-TYPE 83 79 100
'RFXAP MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.331 (Fisher's exact test), Q value = 0.66

Table S8182.  Gene #753: 'RFXAP MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
RFXAP MUTATED 1 1 4
RFXAP WILD-TYPE 88 159 134
'RFXAP MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.336 (Fisher's exact test), Q value = 0.66

Table S8183.  Gene #753: 'RFXAP MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
RFXAP MUTATED 5 1 0
RFXAP WILD-TYPE 177 132 72
'RFXAP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.283 (Fisher's exact test), Q value = 0.61

Table S8184.  Gene #753: 'RFXAP MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
RFXAP MUTATED 1 1 3 1
RFXAP WILD-TYPE 111 95 89 185
'RFXAP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.345 (Fisher's exact test), Q value = 0.67

Table S8185.  Gene #753: 'RFXAP MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
RFXAP MUTATED 1 0 1 1 2 1 0
RFXAP WILD-TYPE 59 50 48 39 61 124 99
'RFXAP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.572 (Fisher's exact test), Q value = 0.88

Table S8186.  Gene #753: 'RFXAP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
RFXAP MUTATED 2 2 0 2
RFXAP WILD-TYPE 128 76 68 194
'RFXAP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.245 (Fisher's exact test), Q value = 0.57

Table S8187.  Gene #753: 'RFXAP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
RFXAP MUTATED 0 3 0 2 0 0 1 0 0
RFXAP WILD-TYPE 40 59 28 78 69 48 42 28 74
'ABCF3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0647 (Fisher's exact test), Q value = 0.28

Table S8188.  Gene #754: 'ABCF3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ABCF3 MUTATED 1 0 0 2
ABCF3 WILD-TYPE 45 58 64 41
'ABCF3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0136 (Fisher's exact test), Q value = 0.11

Table S8189.  Gene #754: 'ABCF3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ABCF3 MUTATED 3 0 0
ABCF3 WILD-TYPE 48 83 77

Figure S2325.  Get High-res Image Gene #754: 'ABCF3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'ABCF3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.012 (Fisher's exact test), Q value = 0.11

Table S8190.  Gene #754: 'ABCF3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ABCF3 MUTATED 12 2 1 0
ABCF3 WILD-TYPE 166 181 100 20

Figure S2326.  Get High-res Image Gene #754: 'ABCF3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ABCF3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.882 (Fisher's exact test), Q value = 1

Table S8191.  Gene #754: 'ABCF3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ABCF3 MUTATED 5 3 5
ABCF3 WILD-TYPE 82 77 95
'ABCF3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.803 (Fisher's exact test), Q value = 1

Table S8192.  Gene #754: 'ABCF3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ABCF3 MUTATED 3 6 7
ABCF3 WILD-TYPE 86 154 131
'ABCF3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.839 (Fisher's exact test), Q value = 1

Table S8193.  Gene #754: 'ABCF3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ABCF3 MUTATED 9 5 2
ABCF3 WILD-TYPE 173 128 70
'ABCF3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0599 (Fisher's exact test), Q value = 0.27

Table S8194.  Gene #754: 'ABCF3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ABCF3 MUTATED 2 7 4 3
ABCF3 WILD-TYPE 110 89 88 183
'ABCF3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0139 (Fisher's exact test), Q value = 0.12

Table S8195.  Gene #754: 'ABCF3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ABCF3 MUTATED 1 3 5 1 2 0 4
ABCF3 WILD-TYPE 59 47 44 39 61 125 95

Figure S2327.  Get High-res Image Gene #754: 'ABCF3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ABCF3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.255 (Fisher's exact test), Q value = 0.58

Table S8196.  Gene #754: 'ABCF3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ABCF3 MUTATED 6 4 0 6
ABCF3 WILD-TYPE 124 74 68 190
'ABCF3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.32 (Fisher's exact test), Q value = 0.65

Table S8197.  Gene #754: 'ABCF3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ABCF3 MUTATED 2 3 1 1 6 1 1 0 1
ABCF3 WILD-TYPE 38 59 27 79 63 47 42 28 73
'ABCF3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0964 (Fisher's exact test), Q value = 0.34

Table S8198.  Gene #754: 'ABCF3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
ABCF3 MUTATED 2 0 0 2
ABCF3 WILD-TYPE 31 31 27 17
'ABCF3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.87 (Fisher's exact test), Q value = 1

Table S8199.  Gene #754: 'ABCF3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
ABCF3 MUTATED 3 0 1 0
ABCF3 WILD-TYPE 51 10 23 22
'ZMYM4 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.57 (Fisher's exact test), Q value = 0.88

Table S8200.  Gene #755: 'ZMYM4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ZMYM4 MUTATED 3 2 1 2
ZMYM4 WILD-TYPE 43 56 63 41
'ZMYM4 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.532 (Fisher's exact test), Q value = 0.85

Table S8201.  Gene #755: 'ZMYM4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ZMYM4 MUTATED 3 2 3
ZMYM4 WILD-TYPE 48 81 74
'ZMYM4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0154 (Fisher's exact test), Q value = 0.12

Table S8202.  Gene #755: 'ZMYM4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ZMYM4 MUTATED 13 2 3 1
ZMYM4 WILD-TYPE 165 181 98 19

Figure S2328.  Get High-res Image Gene #755: 'ZMYM4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ZMYM4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.29 (Fisher's exact test), Q value = 0.62

Table S8203.  Gene #755: 'ZMYM4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ZMYM4 MUTATED 4 1 6
ZMYM4 WILD-TYPE 83 79 94
'ZMYM4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.341 (Fisher's exact test), Q value = 0.67

Table S8204.  Gene #755: 'ZMYM4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ZMYM4 MUTATED 1 8 5
ZMYM4 WILD-TYPE 88 152 133
'ZMYM4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.258 (Fisher's exact test), Q value = 0.58

Table S8205.  Gene #755: 'ZMYM4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ZMYM4 MUTATED 6 3 5
ZMYM4 WILD-TYPE 176 130 67
'ZMYM4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.638 (Fisher's exact test), Q value = 0.93

Table S8206.  Gene #755: 'ZMYM4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ZMYM4 MUTATED 4 6 3 6
ZMYM4 WILD-TYPE 108 90 89 180
'ZMYM4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.514 (Fisher's exact test), Q value = 0.84

Table S8207.  Gene #755: 'ZMYM4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ZMYM4 MUTATED 4 3 3 0 2 3 4
ZMYM4 WILD-TYPE 56 47 46 40 61 122 95
'ZMYM4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.904 (Fisher's exact test), Q value = 1

Table S8208.  Gene #755: 'ZMYM4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ZMYM4 MUTATED 6 2 2 8
ZMYM4 WILD-TYPE 124 76 66 188
'ZMYM4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.581 (Fisher's exact test), Q value = 0.89

Table S8209.  Gene #755: 'ZMYM4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ZMYM4 MUTATED 2 3 2 1 3 2 3 1 1
ZMYM4 WILD-TYPE 38 59 26 79 66 46 40 27 73
'WWC3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00259 (Fisher's exact test), Q value = 0.044

Table S8210.  Gene #756: 'WWC3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
WWC3 MUTATED 4 0 0 4
WWC3 WILD-TYPE 42 58 64 39

Figure S2329.  Get High-res Image Gene #756: 'WWC3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'WWC3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0488 (Fisher's exact test), Q value = 0.24

Table S8211.  Gene #756: 'WWC3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
WWC3 MUTATED 5 1 2
WWC3 WILD-TYPE 46 82 75

Figure S2330.  Get High-res Image Gene #756: 'WWC3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'WWC3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00146 (Fisher's exact test), Q value = 0.031

Table S8212.  Gene #756: 'WWC3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
WWC3 MUTATED 20 5 2 0
WWC3 WILD-TYPE 158 178 99 20

Figure S2331.  Get High-res Image Gene #756: 'WWC3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'WWC3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.412 (Fisher's exact test), Q value = 0.74

Table S8213.  Gene #756: 'WWC3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
WWC3 MUTATED 5 4 10
WWC3 WILD-TYPE 82 76 90
'WWC3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00668 (Fisher's exact test), Q value = 0.075

Table S8214.  Gene #756: 'WWC3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
WWC3 MUTATED 2 5 15
WWC3 WILD-TYPE 87 155 123

Figure S2332.  Get High-res Image Gene #756: 'WWC3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'WWC3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.303 (Fisher's exact test), Q value = 0.63

Table S8215.  Gene #756: 'WWC3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
WWC3 MUTATED 14 6 2
WWC3 WILD-TYPE 168 127 70
'WWC3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.326 (Fisher's exact test), Q value = 0.66

Table S8216.  Gene #756: 'WWC3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
WWC3 MUTATED 4 9 5 9
WWC3 WILD-TYPE 108 87 87 177
'WWC3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00159 (Fisher's exact test), Q value = 0.033

Table S8217.  Gene #756: 'WWC3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
WWC3 MUTATED 4 2 9 2 2 1 7
WWC3 WILD-TYPE 56 48 40 38 61 124 92

Figure S2333.  Get High-res Image Gene #756: 'WWC3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'WWC3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0903 (Fisher's exact test), Q value = 0.33

Table S8218.  Gene #756: 'WWC3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
WWC3 MUTATED 12 1 4 9
WWC3 WILD-TYPE 118 77 64 187
'WWC3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00722 (Fisher's exact test), Q value = 0.079

Table S8219.  Gene #756: 'WWC3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
WWC3 MUTATED 1 2 3 3 10 0 4 2 1
WWC3 WILD-TYPE 39 60 25 77 59 48 39 26 73

Figure S2334.  Get High-res Image Gene #756: 'WWC3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'WWC3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.133 (Fisher's exact test), Q value = 0.41

Table S8220.  Gene #756: 'WWC3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
WWC3 MUTATED 2 1 1 4
WWC3 WILD-TYPE 31 30 26 15
'WWC3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.295 (Fisher's exact test), Q value = 0.62

Table S8221.  Gene #756: 'WWC3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
WWC3 MUTATED 3 0 4 1
WWC3 WILD-TYPE 51 10 20 21
'OR7C1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.173 (Fisher's exact test), Q value = 0.47

Table S8222.  Gene #757: 'OR7C1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
OR7C1 MUTATED 1 0 2 3
OR7C1 WILD-TYPE 45 58 62 40
'OR7C1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0229 (Fisher's exact test), Q value = 0.15

Table S8223.  Gene #757: 'OR7C1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
OR7C1 MUTATED 4 2 0
OR7C1 WILD-TYPE 47 81 77

Figure S2335.  Get High-res Image Gene #757: 'OR7C1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'OR7C1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.346 (Fisher's exact test), Q value = 0.67

Table S8224.  Gene #757: 'OR7C1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
OR7C1 MUTATED 7 2 2 0
OR7C1 WILD-TYPE 171 181 99 20
'OR7C1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.633 (Fisher's exact test), Q value = 0.93

Table S8225.  Gene #757: 'OR7C1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
OR7C1 MUTATED 1 1 3
OR7C1 WILD-TYPE 86 79 97
'OR7C1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.104 (Fisher's exact test), Q value = 0.36

Table S8226.  Gene #757: 'OR7C1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
OR7C1 MUTATED 4 1 2
OR7C1 WILD-TYPE 85 159 136
'OR7C1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.22 (Fisher's exact test), Q value = 0.53

Table S8227.  Gene #757: 'OR7C1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
OR7C1 MUTATED 3 1 3
OR7C1 WILD-TYPE 179 132 69
'OR7C1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.483 (Fisher's exact test), Q value = 0.81

Table S8228.  Gene #757: 'OR7C1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
OR7C1 MUTATED 1 1 3 6
OR7C1 WILD-TYPE 111 95 89 180
'OR7C1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.28 (Fisher's exact test), Q value = 0.61

Table S8229.  Gene #757: 'OR7C1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
OR7C1 MUTATED 0 0 2 0 3 2 4
OR7C1 WILD-TYPE 60 50 47 40 60 123 95
'OR7C1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.398 (Fisher's exact test), Q value = 0.72

Table S8230.  Gene #757: 'OR7C1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
OR7C1 MUTATED 1 3 1 6
OR7C1 WILD-TYPE 129 75 67 190
'OR7C1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.362 (Fisher's exact test), Q value = 0.69

Table S8231.  Gene #757: 'OR7C1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
OR7C1 MUTATED 0 3 1 1 4 0 0 0 2
OR7C1 WILD-TYPE 40 59 27 79 65 48 43 28 72
'OR7C1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.872 (Fisher's exact test), Q value = 1

Table S8232.  Gene #757: 'OR7C1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
OR7C1 MUTATED 1 1 0 1
OR7C1 WILD-TYPE 32 30 27 18
'OR7C1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.563 (Fisher's exact test), Q value = 0.87

Table S8233.  Gene #757: 'OR7C1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
OR7C1 MUTATED 3 0 0 0
OR7C1 WILD-TYPE 51 10 24 22
'GRM7 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.322 (Fisher's exact test), Q value = 0.65

Table S8234.  Gene #758: 'GRM7 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
GRM7 MUTATED 4 3 1 3
GRM7 WILD-TYPE 42 55 63 40
'GRM7 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S8235.  Gene #758: 'GRM7 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
GRM7 MUTATED 3 4 4
GRM7 WILD-TYPE 48 79 73
'GRM7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0318 (Fisher's exact test), Q value = 0.18

Table S8236.  Gene #758: 'GRM7 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
GRM7 MUTATED 18 5 6 1
GRM7 WILD-TYPE 160 178 95 19

Figure S2336.  Get High-res Image Gene #758: 'GRM7 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'GRM7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.915 (Fisher's exact test), Q value = 1

Table S8237.  Gene #758: 'GRM7 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
GRM7 MUTATED 7 5 8
GRM7 WILD-TYPE 80 75 92
'GRM7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.565 (Fisher's exact test), Q value = 0.87

Table S8238.  Gene #758: 'GRM7 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
GRM7 MUTATED 4 9 11
GRM7 WILD-TYPE 85 151 127
'GRM7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.506 (Fisher's exact test), Q value = 0.83

Table S8239.  Gene #758: 'GRM7 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
GRM7 MUTATED 12 6 6
GRM7 WILD-TYPE 170 127 66
'GRM7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.192 (Fisher's exact test), Q value = 0.49

Table S8240.  Gene #758: 'GRM7 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
GRM7 MUTATED 4 9 8 9
GRM7 WILD-TYPE 108 87 84 177
'GRM7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.218 (Fisher's exact test), Q value = 0.53

Table S8241.  Gene #758: 'GRM7 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
GRM7 MUTATED 3 3 8 2 4 6 4
GRM7 WILD-TYPE 57 47 41 38 59 119 95
'GRM7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0142 (Fisher's exact test), Q value = 0.12

Table S8242.  Gene #758: 'GRM7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
GRM7 MUTATED 13 6 0 9
GRM7 WILD-TYPE 117 72 68 187

Figure S2337.  Get High-res Image Gene #758: 'GRM7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'GRM7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.434 (Fisher's exact test), Q value = 0.76

Table S8243.  Gene #758: 'GRM7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
GRM7 MUTATED 5 3 1 7 6 1 2 1 2
GRM7 WILD-TYPE 35 59 27 73 63 47 41 27 72
'GRM7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0276 (Fisher's exact test), Q value = 0.17

Table S8244.  Gene #758: 'GRM7 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
GRM7 MUTATED 1 2 0 4
GRM7 WILD-TYPE 32 29 27 15

Figure S2338.  Get High-res Image Gene #758: 'GRM7 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'GRM7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.339 (Fisher's exact test), Q value = 0.67

Table S8245.  Gene #758: 'GRM7 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
GRM7 MUTATED 6 0 1 0
GRM7 WILD-TYPE 48 10 23 22
'RANBP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.441 (Fisher's exact test), Q value = 0.77

Table S8246.  Gene #759: 'RANBP1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
RANBP1 MUTATED 4 2 0 0
RANBP1 WILD-TYPE 174 181 101 20
'RANBP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.288 (Fisher's exact test), Q value = 0.62

Table S8247.  Gene #759: 'RANBP1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
RANBP1 MUTATED 3 0 3
RANBP1 WILD-TYPE 84 80 97
'RANBP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.239 (Fisher's exact test), Q value = 0.56

Table S8248.  Gene #759: 'RANBP1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
RANBP1 MUTATED 0 2 4
RANBP1 WILD-TYPE 89 158 134
'RANBP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S8249.  Gene #759: 'RANBP1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
RANBP1 MUTATED 3 2 1
RANBP1 WILD-TYPE 179 131 71
'RANBP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0202 (Fisher's exact test), Q value = 0.14

Table S8250.  Gene #759: 'RANBP1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
RANBP1 MUTATED 1 4 1 0
RANBP1 WILD-TYPE 111 92 91 186

Figure S2339.  Get High-res Image Gene #759: 'RANBP1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'RANBP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00507 (Fisher's exact test), Q value = 0.064

Table S8251.  Gene #759: 'RANBP1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
RANBP1 MUTATED 0 2 3 0 1 0 0
RANBP1 WILD-TYPE 60 48 46 40 62 125 99

Figure S2340.  Get High-res Image Gene #759: 'RANBP1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'RANBP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.741 (Fisher's exact test), Q value = 1

Table S8252.  Gene #759: 'RANBP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
RANBP1 MUTATED 3 1 0 2
RANBP1 WILD-TYPE 127 77 68 194
'RANBP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.575 (Fisher's exact test), Q value = 0.88

Table S8253.  Gene #759: 'RANBP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
RANBP1 MUTATED 2 1 0 0 1 1 0 0 1
RANBP1 WILD-TYPE 38 61 28 80 68 47 43 28 73
'PAK7 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0297 (Fisher's exact test), Q value = 0.18

Table S8254.  Gene #760: 'PAK7 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
PAK7 MUTATED 1 1 0 4
PAK7 WILD-TYPE 45 57 64 39

Figure S2341.  Get High-res Image Gene #760: 'PAK7 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'PAK7 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.58 (Fisher's exact test), Q value = 0.88

Table S8255.  Gene #760: 'PAK7 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
PAK7 MUTATED 2 1 3
PAK7 WILD-TYPE 49 82 74
'PAK7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00448 (Fisher's exact test), Q value = 0.061

Table S8256.  Gene #760: 'PAK7 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
PAK7 MUTATED 15 2 7 1
PAK7 WILD-TYPE 163 181 94 19

Figure S2342.  Get High-res Image Gene #760: 'PAK7 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'PAK7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.631 (Fisher's exact test), Q value = 0.93

Table S8257.  Gene #760: 'PAK7 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
PAK7 MUTATED 6 4 9
PAK7 WILD-TYPE 81 76 91
'PAK7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.343 (Fisher's exact test), Q value = 0.67

Table S8258.  Gene #760: 'PAK7 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
PAK7 MUTATED 3 8 11
PAK7 WILD-TYPE 86 152 127
'PAK7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.204 (Fisher's exact test), Q value = 0.51

Table S8259.  Gene #760: 'PAK7 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
PAK7 MUTATED 12 9 1
PAK7 WILD-TYPE 170 124 71
'PAK7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.104 (Fisher's exact test), Q value = 0.36

Table S8260.  Gene #760: 'PAK7 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
PAK7 MUTATED 7 9 5 5
PAK7 WILD-TYPE 105 87 87 181
'PAK7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0474 (Fisher's exact test), Q value = 0.23

Table S8261.  Gene #760: 'PAK7 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
PAK7 MUTATED 5 4 4 4 3 1 5
PAK7 WILD-TYPE 55 46 45 36 60 124 94

Figure S2343.  Get High-res Image Gene #760: 'PAK7 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'PAK7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0406 (Fisher's exact test), Q value = 0.21

Table S8262.  Gene #760: 'PAK7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
PAK7 MUTATED 13 4 1 7
PAK7 WILD-TYPE 117 74 67 189

Figure S2344.  Get High-res Image Gene #760: 'PAK7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'PAK7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.147 (Fisher's exact test), Q value = 0.43

Table S8263.  Gene #760: 'PAK7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
PAK7 MUTATED 4 3 2 7 6 0 1 0 2
PAK7 WILD-TYPE 36 59 26 73 63 48 42 28 72
'PAK7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.352 (Fisher's exact test), Q value = 0.68

Table S8264.  Gene #760: 'PAK7 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
PAK7 MUTATED 3 1 1 3
PAK7 WILD-TYPE 30 30 26 16
'PAK7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.433 (Fisher's exact test), Q value = 0.76

Table S8265.  Gene #760: 'PAK7 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
PAK7 MUTATED 6 0 2 0
PAK7 WILD-TYPE 48 10 22 22
'LUM MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.309 (Fisher's exact test), Q value = 0.64

Table S8266.  Gene #761: 'LUM MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
LUM MUTATED 1 1 0 2
LUM WILD-TYPE 45 57 64 41
'LUM MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.834 (Fisher's exact test), Q value = 1

Table S8267.  Gene #761: 'LUM MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
LUM MUTATED 1 1 2
LUM WILD-TYPE 50 82 75
'LUM MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0903 (Fisher's exact test), Q value = 0.33

Table S8268.  Gene #761: 'LUM MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
LUM MUTATED 9 2 2 1
LUM WILD-TYPE 169 181 99 19
'LUM MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.499 (Fisher's exact test), Q value = 0.83

Table S8269.  Gene #761: 'LUM MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
LUM MUTATED 4 1 3
LUM WILD-TYPE 83 79 97
'LUM MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.724 (Fisher's exact test), Q value = 0.99

Table S8270.  Gene #761: 'LUM MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
LUM MUTATED 2 7 4
LUM WILD-TYPE 87 153 134
'LUM MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.338 (Fisher's exact test), Q value = 0.67

Table S8271.  Gene #761: 'LUM MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
LUM MUTATED 4 7 2
LUM WILD-TYPE 178 126 70
'LUM MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.897 (Fisher's exact test), Q value = 1

Table S8272.  Gene #761: 'LUM MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
LUM MUTATED 3 2 2 7
LUM WILD-TYPE 109 94 90 179
'LUM MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00195 (Fisher's exact test), Q value = 0.037

Table S8273.  Gene #761: 'LUM MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
LUM MUTATED 5 0 1 2 0 0 6
LUM WILD-TYPE 55 50 48 38 63 125 93

Figure S2345.  Get High-res Image Gene #761: 'LUM MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'LUM MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.256 (Fisher's exact test), Q value = 0.58

Table S8274.  Gene #761: 'LUM MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
LUM MUTATED 6 1 0 7
LUM WILD-TYPE 124 77 68 189
'LUM MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.307 (Fisher's exact test), Q value = 0.64

Table S8275.  Gene #761: 'LUM MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
LUM MUTATED 0 1 1 2 6 2 1 0 1
LUM WILD-TYPE 40 61 27 78 63 46 42 28 73
'LUM MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.645 (Fisher's exact test), Q value = 0.93

Table S8276.  Gene #761: 'LUM MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
LUM MUTATED 1 2 0 1
LUM WILD-TYPE 32 29 27 18
'LUM MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.765 (Fisher's exact test), Q value = 1

Table S8277.  Gene #761: 'LUM MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
LUM MUTATED 3 0 0 1
LUM WILD-TYPE 51 10 24 21
'WDR66 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00103 (Fisher's exact test), Q value = 0.025

Table S8278.  Gene #762: 'WDR66 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
WDR66 MUTATED 4 0 0 5
WDR66 WILD-TYPE 42 58 64 38

Figure S2346.  Get High-res Image Gene #762: 'WDR66 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'WDR66 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.827 (Fisher's exact test), Q value = 1

Table S8279.  Gene #762: 'WDR66 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
WDR66 MUTATED 3 3 3
WDR66 WILD-TYPE 48 80 74
'WDR66 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00185 (Fisher's exact test), Q value = 0.036

Table S8280.  Gene #762: 'WDR66 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
WDR66 MUTATED 16 3 1 1
WDR66 WILD-TYPE 162 180 100 19

Figure S2347.  Get High-res Image Gene #762: 'WDR66 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'WDR66 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.151 (Fisher's exact test), Q value = 0.44

Table S8281.  Gene #762: 'WDR66 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
WDR66 MUTATED 7 3 2
WDR66 WILD-TYPE 80 77 98
'WDR66 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.661 (Fisher's exact test), Q value = 0.95

Table S8282.  Gene #762: 'WDR66 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
WDR66 MUTATED 3 6 8
WDR66 WILD-TYPE 86 154 130
'WDR66 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.68 (Fisher's exact test), Q value = 0.96

Table S8283.  Gene #762: 'WDR66 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
WDR66 MUTATED 10 5 2
WDR66 WILD-TYPE 172 128 70
'WDR66 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.705 (Fisher's exact test), Q value = 0.98

Table S8284.  Gene #762: 'WDR66 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
WDR66 MUTATED 4 3 6 9
WDR66 WILD-TYPE 108 93 86 177
'WDR66 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0817 (Fisher's exact test), Q value = 0.31

Table S8285.  Gene #762: 'WDR66 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
WDR66 MUTATED 4 1 6 0 2 3 6
WDR66 WILD-TYPE 56 49 43 40 61 122 93
'WDR66 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.558 (Fisher's exact test), Q value = 0.87

Table S8286.  Gene #762: 'WDR66 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
WDR66 MUTATED 6 5 1 9
WDR66 WILD-TYPE 124 73 67 187
'WDR66 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.573 (Fisher's exact test), Q value = 0.88

Table S8287.  Gene #762: 'WDR66 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
WDR66 MUTATED 1 5 3 3 4 1 1 0 3
WDR66 WILD-TYPE 39 57 25 77 65 47 42 28 71
'WDR66 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.209 (Fisher's exact test), Q value = 0.52

Table S8288.  Gene #762: 'WDR66 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
WDR66 MUTATED 4 1 0 1
WDR66 WILD-TYPE 29 30 27 18
'WDR66 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.791 (Fisher's exact test), Q value = 1

Table S8289.  Gene #762: 'WDR66 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
WDR66 MUTATED 3 1 1 1
WDR66 WILD-TYPE 51 9 23 21
'IRAK3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0189 (Fisher's exact test), Q value = 0.14

Table S8290.  Gene #763: 'IRAK3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
IRAK3 MUTATED 7 1 0 1
IRAK3 WILD-TYPE 171 182 101 19

Figure S2348.  Get High-res Image Gene #763: 'IRAK3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'IRAK3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.71 (Fisher's exact test), Q value = 0.98

Table S8291.  Gene #763: 'IRAK3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
IRAK3 MUTATED 3 1 3
IRAK3 WILD-TYPE 84 79 97
'IRAK3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.735 (Fisher's exact test), Q value = 1

Table S8292.  Gene #763: 'IRAK3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
IRAK3 MUTATED 1 3 4
IRAK3 WILD-TYPE 88 157 134
'IRAK3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.724 (Fisher's exact test), Q value = 0.99

Table S8293.  Gene #763: 'IRAK3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
IRAK3 MUTATED 3 3 2
IRAK3 WILD-TYPE 179 130 70
'IRAK3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.261 (Fisher's exact test), Q value = 0.58

Table S8294.  Gene #763: 'IRAK3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
IRAK3 MUTATED 1 4 2 2
IRAK3 WILD-TYPE 111 92 90 184
'IRAK3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0476 (Fisher's exact test), Q value = 0.23

Table S8295.  Gene #763: 'IRAK3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
IRAK3 MUTATED 2 2 3 0 1 0 1
IRAK3 WILD-TYPE 58 48 46 40 62 125 98

Figure S2349.  Get High-res Image Gene #763: 'IRAK3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'IRAK3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.489 (Fisher's exact test), Q value = 0.82

Table S8296.  Gene #763: 'IRAK3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
IRAK3 MUTATED 4 1 0 3
IRAK3 WILD-TYPE 126 77 68 193
'IRAK3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.342 (Fisher's exact test), Q value = 0.67

Table S8297.  Gene #763: 'IRAK3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
IRAK3 MUTATED 1 1 0 0 4 1 0 0 1
IRAK3 WILD-TYPE 39 61 28 80 65 47 43 28 73
'SLC41A2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.244 (Fisher's exact test), Q value = 0.57

Table S8298.  Gene #764: 'SLC41A2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
SLC41A2 MUTATED 6 3 0 0
SLC41A2 WILD-TYPE 172 180 101 20
'SLC41A2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.344 (Fisher's exact test), Q value = 0.67

Table S8299.  Gene #764: 'SLC41A2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
SLC41A2 MUTATED 4 2 1
SLC41A2 WILD-TYPE 83 78 99
'SLC41A2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.176 (Fisher's exact test), Q value = 0.48

Table S8300.  Gene #764: 'SLC41A2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
SLC41A2 MUTATED 0 3 5
SLC41A2 WILD-TYPE 89 157 133
'SLC41A2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.562 (Fisher's exact test), Q value = 0.87

Table S8301.  Gene #764: 'SLC41A2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
SLC41A2 MUTATED 5 3 0
SLC41A2 WILD-TYPE 177 130 72
'SLC41A2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.502 (Fisher's exact test), Q value = 0.83

Table S8302.  Gene #764: 'SLC41A2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
SLC41A2 MUTATED 3 1 3 2
SLC41A2 WILD-TYPE 109 95 89 184
'SLC41A2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0829 (Fisher's exact test), Q value = 0.31

Table S8303.  Gene #764: 'SLC41A2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
SLC41A2 MUTATED 2 0 2 1 3 1 0
SLC41A2 WILD-TYPE 58 50 47 39 60 124 99
'SLC41A2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.195 (Fisher's exact test), Q value = 0.5

Table S8304.  Gene #764: 'SLC41A2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
SLC41A2 MUTATED 4 3 0 2
SLC41A2 WILD-TYPE 126 75 68 194
'SLC41A2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.472 (Fisher's exact test), Q value = 0.8

Table S8305.  Gene #764: 'SLC41A2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
SLC41A2 MUTATED 0 3 0 3 2 1 0 0 0
SLC41A2 WILD-TYPE 40 59 28 77 67 47 43 28 74
'ING2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0606 (Fisher's exact test), Q value = 0.27

Table S8306.  Gene #765: 'ING2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ING2 MUTATED 6 0 1 0
ING2 WILD-TYPE 172 183 100 20
'ING2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.253 (Fisher's exact test), Q value = 0.58

Table S8307.  Gene #765: 'ING2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ING2 MUTATED 2 0 4
ING2 WILD-TYPE 85 80 96
'ING2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.238 (Fisher's exact test), Q value = 0.56

Table S8308.  Gene #765: 'ING2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ING2 MUTATED 0 2 4
ING2 WILD-TYPE 89 158 134
'ING2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S8309.  Gene #765: 'ING2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ING2 MUTATED 3 2 1
ING2 WILD-TYPE 179 131 71
'ING2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0334 (Fisher's exact test), Q value = 0.19

Table S8310.  Gene #765: 'ING2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ING2 MUTATED 0 4 2 1
ING2 WILD-TYPE 112 92 90 185

Figure S2350.  Get High-res Image Gene #765: 'ING2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'ING2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00065 (Fisher's exact test), Q value = 0.018

Table S8311.  Gene #765: 'ING2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ING2 MUTATED 1 2 4 0 0 0 0
ING2 WILD-TYPE 59 48 45 40 63 125 99

Figure S2351.  Get High-res Image Gene #765: 'ING2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ING2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.385 (Fisher's exact test), Q value = 0.71

Table S8312.  Gene #765: 'ING2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ING2 MUTATED 4 1 0 2
ING2 WILD-TYPE 126 77 68 194
'ING2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.535 (Fisher's exact test), Q value = 0.86

Table S8313.  Gene #765: 'ING2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ING2 MUTATED 0 2 1 0 2 0 1 0 1
ING2 WILD-TYPE 40 60 27 80 67 48 42 28 73
'DNAJC11 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00597 (Fisher's exact test), Q value = 0.07

Table S8314.  Gene #766: 'DNAJC11 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
DNAJC11 MUTATED 4 0 0 1
DNAJC11 WILD-TYPE 42 58 64 42

Figure S2352.  Get High-res Image Gene #766: 'DNAJC11 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'DNAJC11 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.25 (Fisher's exact test), Q value = 0.58

Table S8315.  Gene #766: 'DNAJC11 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
DNAJC11 MUTATED 3 1 1
DNAJC11 WILD-TYPE 48 82 76
'DNAJC11 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0128 (Fisher's exact test), Q value = 0.11

Table S8316.  Gene #766: 'DNAJC11 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
DNAJC11 MUTATED 8 0 4 0
DNAJC11 WILD-TYPE 170 183 97 20

Figure S2353.  Get High-res Image Gene #766: 'DNAJC11 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'DNAJC11 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.776 (Fisher's exact test), Q value = 1

Table S8317.  Gene #766: 'DNAJC11 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
DNAJC11 MUTATED 1 2 3
DNAJC11 WILD-TYPE 86 78 97
'DNAJC11 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.382 (Fisher's exact test), Q value = 0.71

Table S8318.  Gene #766: 'DNAJC11 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
DNAJC11 MUTATED 1 6 2
DNAJC11 WILD-TYPE 88 154 136
'DNAJC11 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.911 (Fisher's exact test), Q value = 1

Table S8319.  Gene #766: 'DNAJC11 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
DNAJC11 MUTATED 4 3 2
DNAJC11 WILD-TYPE 178 130 70
'DNAJC11 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.823 (Fisher's exact test), Q value = 1

Table S8320.  Gene #766: 'DNAJC11 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
DNAJC11 MUTATED 3 2 1 6
DNAJC11 WILD-TYPE 109 94 91 180
'DNAJC11 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0377 (Fisher's exact test), Q value = 0.2

Table S8321.  Gene #766: 'DNAJC11 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
DNAJC11 MUTATED 4 0 2 0 0 1 5
DNAJC11 WILD-TYPE 56 50 47 40 63 124 94

Figure S2354.  Get High-res Image Gene #766: 'DNAJC11 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'DNAJC11 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.141 (Fisher's exact test), Q value = 0.42

Table S8322.  Gene #766: 'DNAJC11 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
DNAJC11 MUTATED 5 0 0 7
DNAJC11 WILD-TYPE 125 78 68 189
'DNAJC11 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.103 (Fisher's exact test), Q value = 0.35

Table S8323.  Gene #766: 'DNAJC11 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
DNAJC11 MUTATED 1 0 0 2 6 2 0 0 1
DNAJC11 WILD-TYPE 39 62 28 78 63 46 43 28 73
'CORO1C MUTATION STATUS' versus 'CN_CNMF'

P value = 0.756 (Fisher's exact test), Q value = 1

Table S8324.  Gene #767: 'CORO1C MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
CORO1C MUTATED 4 2 2 0
CORO1C WILD-TYPE 174 181 99 20
'CORO1C MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.496 (Fisher's exact test), Q value = 0.82

Table S8325.  Gene #767: 'CORO1C MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
CORO1C MUTATED 4 1 3
CORO1C WILD-TYPE 83 79 97
'CORO1C MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.545 (Fisher's exact test), Q value = 0.86

Table S8326.  Gene #767: 'CORO1C MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
CORO1C MUTATED 1 1 3
CORO1C WILD-TYPE 88 159 135
'CORO1C MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.168 (Fisher's exact test), Q value = 0.46

Table S8327.  Gene #767: 'CORO1C MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
CORO1C MUTATED 3 0 2
CORO1C WILD-TYPE 179 133 70
'CORO1C MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0213 (Fisher's exact test), Q value = 0.15

Table S8328.  Gene #767: 'CORO1C MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
CORO1C MUTATED 2 2 4 0
CORO1C WILD-TYPE 110 94 88 186

Figure S2355.  Get High-res Image Gene #767: 'CORO1C MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'CORO1C MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0224 (Fisher's exact test), Q value = 0.15

Table S8329.  Gene #767: 'CORO1C MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
CORO1C MUTATED 1 1 3 1 2 0 0
CORO1C WILD-TYPE 59 49 46 39 61 125 99

Figure S2356.  Get High-res Image Gene #767: 'CORO1C MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CORO1C MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00493 (Fisher's exact test), Q value = 0.063

Table S8330.  Gene #767: 'CORO1C MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
CORO1C MUTATED 6 2 0 0
CORO1C WILD-TYPE 124 76 68 196

Figure S2357.  Get High-res Image Gene #767: 'CORO1C MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'CORO1C MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.358 (Fisher's exact test), Q value = 0.69

Table S8331.  Gene #767: 'CORO1C MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
CORO1C MUTATED 2 1 0 2 3 0 0 0 0
CORO1C WILD-TYPE 38 61 28 78 66 48 43 28 74
'CORO1C MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.872 (Fisher's exact test), Q value = 1

Table S8332.  Gene #767: 'CORO1C MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
CORO1C MUTATED 1 1 0 1
CORO1C WILD-TYPE 32 30 27 18
'CORO1C MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.692 (Fisher's exact test), Q value = 0.97

Table S8333.  Gene #767: 'CORO1C MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
CORO1C MUTATED 1 0 1 1
CORO1C WILD-TYPE 53 10 23 21
'ATP6V1D MUTATION STATUS' versus 'CN_CNMF'

P value = 0.269 (Fisher's exact test), Q value = 0.59

Table S8334.  Gene #768: 'ATP6V1D MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ATP6V1D MUTATED 2 3 0 1
ATP6V1D WILD-TYPE 176 180 101 19
'ATP6V1D MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.52 (Fisher's exact test), Q value = 0.84

Table S8335.  Gene #768: 'ATP6V1D MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ATP6V1D MUTATED 3 2 1
ATP6V1D WILD-TYPE 84 78 99
'ATP6V1D MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.328 (Fisher's exact test), Q value = 0.66

Table S8336.  Gene #768: 'ATP6V1D MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ATP6V1D MUTATED 1 1 4
ATP6V1D WILD-TYPE 88 159 134
'ATP6V1D MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.759 (Fisher's exact test), Q value = 1

Table S8337.  Gene #768: 'ATP6V1D MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ATP6V1D MUTATED 4 1 1
ATP6V1D WILD-TYPE 178 132 71
'ATP6V1D MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0183 (Fisher's exact test), Q value = 0.14

Table S8338.  Gene #768: 'ATP6V1D MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ATP6V1D MUTATED 3 3 0 0
ATP6V1D WILD-TYPE 109 93 92 186

Figure S2358.  Get High-res Image Gene #768: 'ATP6V1D MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'ATP6V1D MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0616 (Fisher's exact test), Q value = 0.27

Table S8339.  Gene #768: 'ATP6V1D MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ATP6V1D MUTATED 1 1 1 2 1 0 0
ATP6V1D WILD-TYPE 59 49 48 38 62 125 99
'ATP6V1D MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00193 (Fisher's exact test), Q value = 0.037

Table S8340.  Gene #768: 'ATP6V1D MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ATP6V1D MUTATED 6 0 0 0
ATP6V1D WILD-TYPE 124 78 68 196

Figure S2359.  Get High-res Image Gene #768: 'ATP6V1D MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'ATP6V1D MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.714 (Fisher's exact test), Q value = 0.98

Table S8341.  Gene #768: 'ATP6V1D MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ATP6V1D MUTATED 1 1 0 2 0 1 1 0 0
ATP6V1D WILD-TYPE 39 61 28 78 69 47 42 28 74
'WNK3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.125 (Fisher's exact test), Q value = 0.39

Table S8342.  Gene #769: 'WNK3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
WNK3 MUTATED 2 2 2 6
WNK3 WILD-TYPE 44 56 62 37
'WNK3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.557 (Fisher's exact test), Q value = 0.87

Table S8343.  Gene #769: 'WNK3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
WNK3 MUTATED 4 3 5
WNK3 WILD-TYPE 47 80 72
'WNK3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0493 (Fisher's exact test), Q value = 0.24

Table S8344.  Gene #769: 'WNK3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
WNK3 MUTATED 19 7 6 0
WNK3 WILD-TYPE 159 176 95 20

Figure S2360.  Get High-res Image Gene #769: 'WNK3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'WNK3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0317 (Fisher's exact test), Q value = 0.18

Table S8345.  Gene #769: 'WNK3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
WNK3 MUTATED 12 4 4
WNK3 WILD-TYPE 75 76 96

Figure S2361.  Get High-res Image Gene #769: 'WNK3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'WNK3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.493 (Fisher's exact test), Q value = 0.82

Table S8346.  Gene #769: 'WNK3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
WNK3 MUTATED 3 10 10
WNK3 WILD-TYPE 86 150 128
'WNK3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S8347.  Gene #769: 'WNK3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
WNK3 MUTATED 11 8 4
WNK3 WILD-TYPE 171 125 68
'WNK3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.404 (Fisher's exact test), Q value = 0.73

Table S8348.  Gene #769: 'WNK3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
WNK3 MUTATED 5 7 9 10
WNK3 WILD-TYPE 107 89 83 176
'WNK3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.114 (Fisher's exact test), Q value = 0.37

Table S8349.  Gene #769: 'WNK3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
WNK3 MUTATED 2 3 8 2 6 5 5
WNK3 WILD-TYPE 58 47 41 38 57 120 94
'WNK3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.048 (Fisher's exact test), Q value = 0.23

Table S8350.  Gene #769: 'WNK3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
WNK3 MUTATED 9 10 1 11
WNK3 WILD-TYPE 121 68 67 185

Figure S2362.  Get High-res Image Gene #769: 'WNK3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'WNK3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0127 (Fisher's exact test), Q value = 0.11

Table S8351.  Gene #769: 'WNK3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
WNK3 MUTATED 2 10 2 7 7 1 0 0 2
WNK3 WILD-TYPE 38 52 26 73 62 47 43 28 72

Figure S2363.  Get High-res Image Gene #769: 'WNK3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'WNK3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0964 (Fisher's exact test), Q value = 0.34

Table S8352.  Gene #769: 'WNK3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
WNK3 MUTATED 1 3 0 3
WNK3 WILD-TYPE 32 28 27 16
'WNK3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S8353.  Gene #769: 'WNK3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
WNK3 MUTATED 4 0 2 1
WNK3 WILD-TYPE 50 10 22 21
'C1ORF168 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0224 (Fisher's exact test), Q value = 0.15

Table S8354.  Gene #770: 'C1ORF168 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
C1ORF168 MUTATED 2 0 0 3
C1ORF168 WILD-TYPE 44 58 64 40

Figure S2364.  Get High-res Image Gene #770: 'C1ORF168 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'C1ORF168 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.253 (Fisher's exact test), Q value = 0.58

Table S8355.  Gene #770: 'C1ORF168 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
C1ORF168 MUTATED 3 1 1
C1ORF168 WILD-TYPE 48 82 76
'C1ORF168 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0157 (Fisher's exact test), Q value = 0.12

Table S8356.  Gene #770: 'C1ORF168 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
C1ORF168 MUTATED 11 1 4 0
C1ORF168 WILD-TYPE 167 182 97 20

Figure S2365.  Get High-res Image Gene #770: 'C1ORF168 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'C1ORF168 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.739 (Fisher's exact test), Q value = 1

Table S8357.  Gene #770: 'C1ORF168 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
C1ORF168 MUTATED 4 2 5
C1ORF168 WILD-TYPE 83 78 95
'C1ORF168 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.48 (Fisher's exact test), Q value = 0.81

Table S8358.  Gene #770: 'C1ORF168 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
C1ORF168 MUTATED 1 6 6
C1ORF168 WILD-TYPE 88 154 132
'C1ORF168 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.933 (Fisher's exact test), Q value = 1

Table S8359.  Gene #770: 'C1ORF168 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
C1ORF168 MUTATED 7 4 2
C1ORF168 WILD-TYPE 175 129 70
'C1ORF168 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.179 (Fisher's exact test), Q value = 0.48

Table S8360.  Gene #770: 'C1ORF168 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
C1ORF168 MUTATED 1 5 5 5
C1ORF168 WILD-TYPE 111 91 87 181
'C1ORF168 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0877 (Fisher's exact test), Q value = 0.32

Table S8361.  Gene #770: 'C1ORF168 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
C1ORF168 MUTATED 2 2 3 2 2 0 5
C1ORF168 WILD-TYPE 58 48 46 38 61 125 94
'C1ORF168 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.752 (Fisher's exact test), Q value = 1

Table S8362.  Gene #770: 'C1ORF168 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
C1ORF168 MUTATED 6 2 2 5
C1ORF168 WILD-TYPE 124 76 66 191
'C1ORF168 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00789 (Fisher's exact test), Q value = 0.083

Table S8363.  Gene #770: 'C1ORF168 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
C1ORF168 MUTATED 1 3 4 1 5 0 1 0 0
C1ORF168 WILD-TYPE 39 59 24 79 64 48 42 28 74

Figure S2366.  Get High-res Image Gene #770: 'C1ORF168 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'C1ORF168 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00818 (Fisher's exact test), Q value = 0.084

Table S8364.  Gene #770: 'C1ORF168 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
C1ORF168 MUTATED 0 0 1 3
C1ORF168 WILD-TYPE 33 31 26 16

Figure S2367.  Get High-res Image Gene #770: 'C1ORF168 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'C1ORF168 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.871 (Fisher's exact test), Q value = 1

Table S8365.  Gene #770: 'C1ORF168 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
C1ORF168 MUTATED 3 0 1 0
C1ORF168 WILD-TYPE 51 10 23 22
'VANGL1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.621 (Fisher's exact test), Q value = 0.92

Table S8366.  Gene #771: 'VANGL1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
VANGL1 MUTATED 6 4 2 1
VANGL1 WILD-TYPE 172 179 99 19
'VANGL1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.852 (Fisher's exact test), Q value = 1

Table S8367.  Gene #771: 'VANGL1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
VANGL1 MUTATED 4 2 4
VANGL1 WILD-TYPE 83 78 96
'VANGL1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.807 (Fisher's exact test), Q value = 1

Table S8368.  Gene #771: 'VANGL1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
VANGL1 MUTATED 3 4 5
VANGL1 WILD-TYPE 86 156 133
'VANGL1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S8369.  Gene #771: 'VANGL1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
VANGL1 MUTATED 6 4 2
VANGL1 WILD-TYPE 176 129 70
'VANGL1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.564 (Fisher's exact test), Q value = 0.87

Table S8370.  Gene #771: 'VANGL1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
VANGL1 MUTATED 3 4 3 3
VANGL1 WILD-TYPE 109 92 89 183
'VANGL1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.515 (Fisher's exact test), Q value = 0.84

Table S8371.  Gene #771: 'VANGL1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
VANGL1 MUTATED 2 2 2 2 1 1 3
VANGL1 WILD-TYPE 58 48 47 38 62 124 96
'VANGL1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.332 (Fisher's exact test), Q value = 0.66

Table S8372.  Gene #771: 'VANGL1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
VANGL1 MUTATED 6 2 0 5
VANGL1 WILD-TYPE 124 76 68 191
'VANGL1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.356 (Fisher's exact test), Q value = 0.69

Table S8373.  Gene #771: 'VANGL1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
VANGL1 MUTATED 1 2 1 4 4 0 1 0 0
VANGL1 WILD-TYPE 39 60 27 76 65 48 42 28 74
'VANGL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0814 (Fisher's exact test), Q value = 0.31

Table S8374.  Gene #771: 'VANGL1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
VANGL1 MUTATED 0 3 0 1
VANGL1 WILD-TYPE 33 28 27 18
'VANGL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.767 (Fisher's exact test), Q value = 1

Table S8375.  Gene #771: 'VANGL1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
VANGL1 MUTATED 3 0 0 1
VANGL1 WILD-TYPE 51 10 24 21
'SPANXC MUTATION STATUS' versus 'CN_CNMF'

P value = 0.339 (Fisher's exact test), Q value = 0.67

Table S8376.  Gene #772: 'SPANXC MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
SPANXC MUTATED 3 0 1 0
SPANXC WILD-TYPE 175 183 100 20
'SPANXC MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.111 (Fisher's exact test), Q value = 0.37

Table S8377.  Gene #772: 'SPANXC MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
SPANXC MUTATED 0 0 3
SPANXC WILD-TYPE 87 80 97
'SPANXC MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.337 (Fisher's exact test), Q value = 0.66

Table S8378.  Gene #772: 'SPANXC MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
SPANXC MUTATED 1 0 2
SPANXC WILD-TYPE 88 160 136
'SPANXC MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.298 (Fisher's exact test), Q value = 0.63

Table S8379.  Gene #772: 'SPANXC MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
SPANXC MUTATED 3 0 0
SPANXC WILD-TYPE 179 133 72
'SPANXC MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0163 (Fisher's exact test), Q value = 0.13

Table S8380.  Gene #772: 'SPANXC MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
SPANXC MUTATED 0 3 1 0
SPANXC WILD-TYPE 112 93 91 186

Figure S2368.  Get High-res Image Gene #772: 'SPANXC MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'SPANXC MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0134 (Fisher's exact test), Q value = 0.11

Table S8381.  Gene #772: 'SPANXC MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
SPANXC MUTATED 0 0 3 0 0 0 1
SPANXC WILD-TYPE 60 50 46 40 63 125 98

Figure S2369.  Get High-res Image Gene #772: 'SPANXC MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'SPANXC MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.741 (Fisher's exact test), Q value = 1

Table S8382.  Gene #772: 'SPANXC MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
SPANXC MUTATED 2 0 0 2
SPANXC WILD-TYPE 128 78 68 194
'SPANXC MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.049 (Fisher's exact test), Q value = 0.24

Table S8383.  Gene #772: 'SPANXC MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
SPANXC MUTATED 0 0 0 0 3 0 0 1 0
SPANXC WILD-TYPE 40 62 28 80 66 48 43 27 74

Figure S2370.  Get High-res Image Gene #772: 'SPANXC MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'KLKB1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00595 (Fisher's exact test), Q value = 0.07

Table S8384.  Gene #773: 'KLKB1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
KLKB1 MUTATED 2 0 0 4
KLKB1 WILD-TYPE 44 58 64 39

Figure S2371.  Get High-res Image Gene #773: 'KLKB1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'KLKB1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00166 (Fisher's exact test), Q value = 0.034

Table S8385.  Gene #773: 'KLKB1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
KLKB1 MUTATED 5 0 1
KLKB1 WILD-TYPE 46 83 76

Figure S2372.  Get High-res Image Gene #773: 'KLKB1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'KLKB1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00171 (Fisher's exact test), Q value = 0.034

Table S8386.  Gene #773: 'KLKB1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
KLKB1 MUTATED 13 1 1 0
KLKB1 WILD-TYPE 165 182 100 20

Figure S2373.  Get High-res Image Gene #773: 'KLKB1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'KLKB1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.436 (Fisher's exact test), Q value = 0.76

Table S8387.  Gene #773: 'KLKB1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
KLKB1 MUTATED 3 1 5
KLKB1 WILD-TYPE 84 79 95
'KLKB1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.112 (Fisher's exact test), Q value = 0.37

Table S8388.  Gene #773: 'KLKB1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
KLKB1 MUTATED 1 5 9
KLKB1 WILD-TYPE 88 155 129
'KLKB1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0896 (Fisher's exact test), Q value = 0.33

Table S8389.  Gene #773: 'KLKB1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
KLKB1 MUTATED 10 5 0
KLKB1 WILD-TYPE 172 128 72
'KLKB1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.303 (Fisher's exact test), Q value = 0.63

Table S8390.  Gene #773: 'KLKB1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
KLKB1 MUTATED 2 6 2 5
KLKB1 WILD-TYPE 110 90 90 181
'KLKB1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00019 (Fisher's exact test), Q value = 0.008

Table S8391.  Gene #773: 'KLKB1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
KLKB1 MUTATED 2 0 7 0 1 0 5
KLKB1 WILD-TYPE 58 50 42 40 62 125 94

Figure S2374.  Get High-res Image Gene #773: 'KLKB1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'KLKB1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.212 (Fisher's exact test), Q value = 0.52

Table S8392.  Gene #773: 'KLKB1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
KLKB1 MUTATED 6 0 1 7
KLKB1 WILD-TYPE 124 78 67 189
'KLKB1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00079 (Fisher's exact test), Q value = 0.021

Table S8393.  Gene #773: 'KLKB1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
KLKB1 MUTATED 1 2 0 0 9 1 1 0 0
KLKB1 WILD-TYPE 39 60 28 80 60 47 42 28 74

Figure S2375.  Get High-res Image Gene #773: 'KLKB1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'SV2A MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.41 (Fisher's exact test), Q value = 0.74

Table S8394.  Gene #774: 'SV2A MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
SV2A MUTATED 2 0 2 2
SV2A WILD-TYPE 44 58 62 41
'SV2A MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.335 (Fisher's exact test), Q value = 0.66

Table S8395.  Gene #774: 'SV2A MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
SV2A MUTATED 3 2 1
SV2A WILD-TYPE 48 81 76
'SV2A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0189 (Fisher's exact test), Q value = 0.14

Table S8396.  Gene #774: 'SV2A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
SV2A MUTATED 15 3 4 1
SV2A WILD-TYPE 163 180 97 19

Figure S2376.  Get High-res Image Gene #774: 'SV2A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'SV2A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0176 (Fisher's exact test), Q value = 0.13

Table S8397.  Gene #774: 'SV2A MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
SV2A MUTATED 11 2 4
SV2A WILD-TYPE 76 78 96

Figure S2377.  Get High-res Image Gene #774: 'SV2A MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'SV2A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0448 (Fisher's exact test), Q value = 0.23

Table S8398.  Gene #774: 'SV2A MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
SV2A MUTATED 3 5 13
SV2A WILD-TYPE 86 155 125

Figure S2378.  Get High-res Image Gene #774: 'SV2A MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'SV2A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.874 (Fisher's exact test), Q value = 1

Table S8399.  Gene #774: 'SV2A MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
SV2A MUTATED 11 7 3
SV2A WILD-TYPE 171 126 69
'SV2A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.319 (Fisher's exact test), Q value = 0.65

Table S8400.  Gene #774: 'SV2A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
SV2A MUTATED 3 7 6 7
SV2A WILD-TYPE 109 89 86 179
'SV2A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0175 (Fisher's exact test), Q value = 0.13

Table S8401.  Gene #774: 'SV2A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
SV2A MUTATED 2 1 7 4 2 2 5
SV2A WILD-TYPE 58 49 42 36 61 123 94

Figure S2379.  Get High-res Image Gene #774: 'SV2A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'SV2A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.656 (Fisher's exact test), Q value = 0.94

Table S8402.  Gene #774: 'SV2A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
SV2A MUTATED 8 5 2 8
SV2A WILD-TYPE 122 73 66 188
'SV2A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.107 (Fisher's exact test), Q value = 0.36

Table S8403.  Gene #774: 'SV2A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
SV2A MUTATED 3 5 2 0 5 1 3 2 2
SV2A WILD-TYPE 37 57 26 80 64 47 40 26 72
'SV2A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S8404.  Gene #774: 'SV2A MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
SV2A MUTATED 1 1 1 1
SV2A WILD-TYPE 32 30 26 18
'SV2A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.671 (Fisher's exact test), Q value = 0.95

Table S8405.  Gene #774: 'SV2A MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
SV2A MUTATED 2 0 2 0
SV2A WILD-TYPE 52 10 22 22
'POLA1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.741 (Fisher's exact test), Q value = 1

Table S8406.  Gene #775: 'POLA1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
POLA1 MUTATED 2 2 1 2
POLA1 WILD-TYPE 44 56 63 41
'POLA1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.698 (Fisher's exact test), Q value = 0.97

Table S8407.  Gene #775: 'POLA1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
POLA1 MUTATED 1 4 2
POLA1 WILD-TYPE 50 79 75
'POLA1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.256 (Fisher's exact test), Q value = 0.58

Table S8408.  Gene #775: 'POLA1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
POLA1 MUTATED 8 4 1 1
POLA1 WILD-TYPE 170 179 100 19
'POLA1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.594 (Fisher's exact test), Q value = 0.9

Table S8409.  Gene #775: 'POLA1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
POLA1 MUTATED 1 3 2
POLA1 WILD-TYPE 86 77 98
'POLA1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.389 (Fisher's exact test), Q value = 0.72

Table S8410.  Gene #775: 'POLA1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
POLA1 MUTATED 1 7 4
POLA1 WILD-TYPE 88 153 134
'POLA1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.284 (Fisher's exact test), Q value = 0.61

Table S8411.  Gene #775: 'POLA1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
POLA1 MUTATED 3 6 3
POLA1 WILD-TYPE 179 127 69
'POLA1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.61 (Fisher's exact test), Q value = 0.91

Table S8412.  Gene #775: 'POLA1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
POLA1 MUTATED 4 1 2 7
POLA1 WILD-TYPE 108 95 90 179
'POLA1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.389 (Fisher's exact test), Q value = 0.72

Table S8413.  Gene #775: 'POLA1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
POLA1 MUTATED 4 1 2 0 0 4 3
POLA1 WILD-TYPE 56 49 47 40 63 121 96
'POLA1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.247 (Fisher's exact test), Q value = 0.57

Table S8414.  Gene #775: 'POLA1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
POLA1 MUTATED 5 0 1 8
POLA1 WILD-TYPE 125 78 67 188
'POLA1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.607 (Fisher's exact test), Q value = 0.91

Table S8415.  Gene #775: 'POLA1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
POLA1 MUTATED 1 0 2 2 3 1 2 0 3
POLA1 WILD-TYPE 39 62 26 78 66 47 41 28 71
'RAB40C MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00991 (Fisher's exact test), Q value = 0.095

Table S8416.  Gene #776: 'RAB40C MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
RAB40C MUTATED 7 0 0 0
RAB40C WILD-TYPE 171 183 101 20

Figure S2380.  Get High-res Image Gene #776: 'RAB40C MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'RAB40C MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.202 (Fisher's exact test), Q value = 0.51

Table S8417.  Gene #776: 'RAB40C MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
RAB40C MUTATED 3 0 4
RAB40C WILD-TYPE 84 80 96
'RAB40C MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.733 (Fisher's exact test), Q value = 1

Table S8418.  Gene #776: 'RAB40C MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
RAB40C MUTATED 1 3 4
RAB40C WILD-TYPE 88 157 134
'RAB40C MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S8419.  Gene #776: 'RAB40C MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
RAB40C MUTATED 4 3 1
RAB40C WILD-TYPE 178 130 71
'RAB40C MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0198 (Fisher's exact test), Q value = 0.14

Table S8420.  Gene #776: 'RAB40C MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
RAB40C MUTATED 0 4 3 1
RAB40C WILD-TYPE 112 92 89 185

Figure S2381.  Get High-res Image Gene #776: 'RAB40C MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'RAB40C MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 5e-05 (Fisher's exact test), Q value = 0.0032

Table S8421.  Gene #776: 'RAB40C MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
RAB40C MUTATED 0 0 6 0 0 0 2
RAB40C WILD-TYPE 60 50 43 40 63 125 97

Figure S2382.  Get High-res Image Gene #776: 'RAB40C MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'RAB40C MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.846 (Fisher's exact test), Q value = 1

Table S8422.  Gene #776: 'RAB40C MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
RAB40C MUTATED 3 1 0 4
RAB40C WILD-TYPE 127 77 68 192
'RAB40C MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00909 (Fisher's exact test), Q value = 0.089

Table S8423.  Gene #776: 'RAB40C MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
RAB40C MUTATED 0 3 0 0 5 0 0 0 0
RAB40C WILD-TYPE 40 59 28 80 64 48 43 28 74

Figure S2383.  Get High-res Image Gene #776: 'RAB40C MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'DHX35 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0154 (Fisher's exact test), Q value = 0.12

Table S8424.  Gene #777: 'DHX35 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
DHX35 MUTATED 1 0 0 3
DHX35 WILD-TYPE 45 58 64 40

Figure S2384.  Get High-res Image Gene #777: 'DHX35 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'DHX35 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S8425.  Gene #777: 'DHX35 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
DHX35 MUTATED 1 2 1
DHX35 WILD-TYPE 50 81 76
'DHX35 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0889 (Fisher's exact test), Q value = 0.32

Table S8426.  Gene #777: 'DHX35 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
DHX35 MUTATED 8 2 1 1
DHX35 WILD-TYPE 170 181 100 19
'DHX35 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.818 (Fisher's exact test), Q value = 1

Table S8427.  Gene #777: 'DHX35 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
DHX35 MUTATED 2 2 4
DHX35 WILD-TYPE 85 78 96
'DHX35 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.606 (Fisher's exact test), Q value = 0.91

Table S8428.  Gene #777: 'DHX35 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
DHX35 MUTATED 1 4 5
DHX35 WILD-TYPE 88 156 133
'DHX35 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.148 (Fisher's exact test), Q value = 0.43

Table S8429.  Gene #777: 'DHX35 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
DHX35 MUTATED 4 6 0
DHX35 WILD-TYPE 178 127 72
'DHX35 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.376 (Fisher's exact test), Q value = 0.71

Table S8430.  Gene #777: 'DHX35 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
DHX35 MUTATED 3 5 1 4
DHX35 WILD-TYPE 109 91 91 182
'DHX35 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.295 (Fisher's exact test), Q value = 0.62

Table S8431.  Gene #777: 'DHX35 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
DHX35 MUTATED 2 2 3 2 1 1 2
DHX35 WILD-TYPE 58 48 46 38 62 124 97
'DHX35 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0595 (Fisher's exact test), Q value = 0.27

Table S8432.  Gene #777: 'DHX35 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
DHX35 MUTATED 7 0 0 6
DHX35 WILD-TYPE 123 78 68 190
'DHX35 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.432 (Fisher's exact test), Q value = 0.76

Table S8433.  Gene #777: 'DHX35 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
DHX35 MUTATED 1 0 2 3 4 1 1 0 1
DHX35 WILD-TYPE 39 62 26 77 65 47 42 28 73
'DHX35 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.872 (Fisher's exact test), Q value = 1

Table S8434.  Gene #777: 'DHX35 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
DHX35 MUTATED 1 1 0 1
DHX35 WILD-TYPE 32 30 27 18
'DHX35 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S8435.  Gene #777: 'DHX35 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
DHX35 MUTATED 2 0 1 0
DHX35 WILD-TYPE 52 10 23 22
'SLC25A13 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.183 (Fisher's exact test), Q value = 0.48

Table S8436.  Gene #778: 'SLC25A13 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
SLC25A13 MUTATED 1 0 3 3
SLC25A13 WILD-TYPE 45 58 61 40
'SLC25A13 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.701 (Fisher's exact test), Q value = 0.97

Table S8437.  Gene #778: 'SLC25A13 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
SLC25A13 MUTATED 1 4 2
SLC25A13 WILD-TYPE 50 79 75
'SLC25A13 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.213 (Fisher's exact test), Q value = 0.52

Table S8438.  Gene #778: 'SLC25A13 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
SLC25A13 MUTATED 9 3 5 0
SLC25A13 WILD-TYPE 169 180 96 20
'SLC25A13 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.466 (Fisher's exact test), Q value = 0.79

Table S8439.  Gene #778: 'SLC25A13 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
SLC25A13 MUTATED 2 3 6
SLC25A13 WILD-TYPE 85 77 94
'SLC25A13 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.848 (Fisher's exact test), Q value = 1

Table S8440.  Gene #778: 'SLC25A13 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
SLC25A13 MUTATED 3 8 5
SLC25A13 WILD-TYPE 86 152 133
'SLC25A13 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.668 (Fisher's exact test), Q value = 0.95

Table S8441.  Gene #778: 'SLC25A13 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
SLC25A13 MUTATED 6 7 3
SLC25A13 WILD-TYPE 176 126 69
'SLC25A13 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.303 (Fisher's exact test), Q value = 0.63

Table S8442.  Gene #778: 'SLC25A13 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
SLC25A13 MUTATED 2 6 4 5
SLC25A13 WILD-TYPE 110 90 88 181
'SLC25A13 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.606 (Fisher's exact test), Q value = 0.91

Table S8443.  Gene #778: 'SLC25A13 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
SLC25A13 MUTATED 2 3 3 0 3 4 2
SLC25A13 WILD-TYPE 58 47 46 40 60 121 97
'SLC25A13 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.417 (Fisher's exact test), Q value = 0.74

Table S8444.  Gene #778: 'SLC25A13 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
SLC25A13 MUTATED 7 1 1 7
SLC25A13 WILD-TYPE 123 77 67 189
'SLC25A13 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0204 (Fisher's exact test), Q value = 0.14

Table S8445.  Gene #778: 'SLC25A13 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
SLC25A13 MUTATED 2 1 4 0 3 0 1 2 3
SLC25A13 WILD-TYPE 38 61 24 80 66 48 42 26 71

Figure S2385.  Get High-res Image Gene #778: 'SLC25A13 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'FAM26E MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0428 (Fisher's exact test), Q value = 0.22

Table S8446.  Gene #779: 'FAM26E MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
FAM26E MUTATED 5 0 0 0
FAM26E WILD-TYPE 173 183 101 20

Figure S2386.  Get High-res Image Gene #779: 'FAM26E MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'FAM26E MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.389 (Fisher's exact test), Q value = 0.72

Table S8447.  Gene #779: 'FAM26E MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
FAM26E MUTATED 1 0 3
FAM26E WILD-TYPE 86 80 97
'FAM26E MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.361 (Fisher's exact test), Q value = 0.69

Table S8448.  Gene #779: 'FAM26E MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
FAM26E MUTATED 0 1 3
FAM26E WILD-TYPE 89 159 135
'FAM26E MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.674 (Fisher's exact test), Q value = 0.96

Table S8449.  Gene #779: 'FAM26E MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
FAM26E MUTATED 3 1 0
FAM26E WILD-TYPE 179 132 72
'FAM26E MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.114 (Fisher's exact test), Q value = 0.37

Table S8450.  Gene #779: 'FAM26E MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
FAM26E MUTATED 0 3 1 1
FAM26E WILD-TYPE 112 93 91 185
'FAM26E MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0015 (Fisher's exact test), Q value = 0.032

Table S8451.  Gene #779: 'FAM26E MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
FAM26E MUTATED 0 0 4 0 0 0 1
FAM26E WILD-TYPE 60 50 45 40 63 125 98

Figure S2387.  Get High-res Image Gene #779: 'FAM26E MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'FAM26E MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.128 (Fisher's exact test), Q value = 0.4

Table S8452.  Gene #779: 'FAM26E MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
FAM26E MUTATED 4 0 0 1
FAM26E WILD-TYPE 126 78 68 195
'FAM26E MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0548 (Fisher's exact test), Q value = 0.25

Table S8453.  Gene #779: 'FAM26E MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
FAM26E MUTATED 0 1 0 0 4 0 0 0 0
FAM26E WILD-TYPE 40 61 28 80 65 48 43 28 74
'SAFB MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0615 (Fisher's exact test), Q value = 0.27

Table S8454.  Gene #780: 'SAFB MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
SAFB MUTATED 3 1 0 0
SAFB WILD-TYPE 43 57 64 43
'SAFB MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.231 (Fisher's exact test), Q value = 0.55

Table S8455.  Gene #780: 'SAFB MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
SAFB MUTATED 2 2 0
SAFB WILD-TYPE 49 81 77
'SAFB MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00364 (Fisher's exact test), Q value = 0.055

Table S8456.  Gene #780: 'SAFB MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
SAFB MUTATED 13 3 0 0
SAFB WILD-TYPE 165 180 101 20

Figure S2388.  Get High-res Image Gene #780: 'SAFB MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'SAFB MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.533 (Fisher's exact test), Q value = 0.85

Table S8457.  Gene #780: 'SAFB MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
SAFB MUTATED 4 2 6
SAFB WILD-TYPE 83 78 94
'SAFB MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0512 (Fisher's exact test), Q value = 0.24

Table S8458.  Gene #780: 'SAFB MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
SAFB MUTATED 0 6 8
SAFB WILD-TYPE 89 154 130
'SAFB MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.278 (Fisher's exact test), Q value = 0.6

Table S8459.  Gene #780: 'SAFB MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
SAFB MUTATED 9 2 3
SAFB WILD-TYPE 173 131 69
'SAFB MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.184 (Fisher's exact test), Q value = 0.48

Table S8460.  Gene #780: 'SAFB MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
SAFB MUTATED 3 6 4 3
SAFB WILD-TYPE 109 90 88 183
'SAFB MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.046 (Fisher's exact test), Q value = 0.23

Table S8461.  Gene #780: 'SAFB MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
SAFB MUTATED 2 2 6 0 2 2 2
SAFB WILD-TYPE 58 48 43 40 61 123 97

Figure S2389.  Get High-res Image Gene #780: 'SAFB MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'SAFB MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0709 (Fisher's exact test), Q value = 0.29

Table S8462.  Gene #780: 'SAFB MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
SAFB MUTATED 7 5 1 3
SAFB WILD-TYPE 123 73 67 193
'SAFB MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.219 (Fisher's exact test), Q value = 0.53

Table S8463.  Gene #780: 'SAFB MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
SAFB MUTATED 1 4 1 1 4 1 2 2 0
SAFB WILD-TYPE 39 58 27 79 65 47 41 26 74
'YES1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.286 (Fisher's exact test), Q value = 0.61

Table S8464.  Gene #781: 'YES1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
YES1 MUTATED 6 4 0 0
YES1 WILD-TYPE 172 179 101 20
'YES1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.296 (Fisher's exact test), Q value = 0.63

Table S8465.  Gene #781: 'YES1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
YES1 MUTATED 5 1 3
YES1 WILD-TYPE 82 79 97
'YES1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.154 (Fisher's exact test), Q value = 0.44

Table S8466.  Gene #781: 'YES1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
YES1 MUTATED 2 1 5
YES1 WILD-TYPE 87 159 133
'YES1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.133 (Fisher's exact test), Q value = 0.41

Table S8467.  Gene #781: 'YES1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
YES1 MUTATED 7 1 0
YES1 WILD-TYPE 175 132 72
'YES1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0265 (Fisher's exact test), Q value = 0.16

Table S8468.  Gene #781: 'YES1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
YES1 MUTATED 1 3 5 1
YES1 WILD-TYPE 111 93 87 185

Figure S2390.  Get High-res Image Gene #781: 'YES1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'YES1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00543 (Fisher's exact test), Q value = 0.067

Table S8469.  Gene #781: 'YES1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
YES1 MUTATED 1 1 5 0 2 1 0
YES1 WILD-TYPE 59 49 44 40 61 124 99

Figure S2391.  Get High-res Image Gene #781: 'YES1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'YES1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0492 (Fisher's exact test), Q value = 0.24

Table S8470.  Gene #781: 'YES1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
YES1 MUTATED 4 4 1 1
YES1 WILD-TYPE 126 74 67 195

Figure S2392.  Get High-res Image Gene #781: 'YES1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'YES1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.126 (Fisher's exact test), Q value = 0.39

Table S8471.  Gene #781: 'YES1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
YES1 MUTATED 1 5 0 1 2 1 0 0 0
YES1 WILD-TYPE 39 57 28 79 67 47 43 28 74
'YES1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.194 (Fisher's exact test), Q value = 0.5

Table S8472.  Gene #781: 'YES1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
YES1 MUTATED 0 1 1 2
YES1 WILD-TYPE 33 30 26 17
'YES1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.219 (Fisher's exact test), Q value = 0.53

Table S8473.  Gene #781: 'YES1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
YES1 MUTATED 3 1 0 0
YES1 WILD-TYPE 51 9 24 22
'ACTL8 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0169 (Fisher's exact test), Q value = 0.13

Table S8474.  Gene #782: 'ACTL8 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ACTL8 MUTATED 3 0 0 0
ACTL8 WILD-TYPE 43 58 64 43

Figure S2393.  Get High-res Image Gene #782: 'ACTL8 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'ACTL8 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.252 (Fisher's exact test), Q value = 0.58

Table S8475.  Gene #782: 'ACTL8 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ACTL8 MUTATED 2 1 0
ACTL8 WILD-TYPE 49 82 77
'ACTL8 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.164 (Fisher's exact test), Q value = 0.46

Table S8476.  Gene #782: 'ACTL8 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ACTL8 MUTATED 5 1 2 1
ACTL8 WILD-TYPE 173 182 99 19
'ACTL8 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.877 (Fisher's exact test), Q value = 1

Table S8477.  Gene #782: 'ACTL8 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ACTL8 MUTATED 2 1 3
ACTL8 WILD-TYPE 85 79 97
'ACTL8 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.206 (Fisher's exact test), Q value = 0.51

Table S8478.  Gene #782: 'ACTL8 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ACTL8 MUTATED 3 1 1
ACTL8 WILD-TYPE 86 159 137
'ACTL8 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.165 (Fisher's exact test), Q value = 0.46

Table S8479.  Gene #782: 'ACTL8 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ACTL8 MUTATED 3 0 2
ACTL8 WILD-TYPE 179 133 70
'ACTL8 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.365 (Fisher's exact test), Q value = 0.69

Table S8480.  Gene #782: 'ACTL8 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ACTL8 MUTATED 2 4 1 2
ACTL8 WILD-TYPE 110 92 91 184
'ACTL8 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.363 (Fisher's exact test), Q value = 0.69

Table S8481.  Gene #782: 'ACTL8 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ACTL8 MUTATED 0 2 1 2 1 1 2
ACTL8 WILD-TYPE 60 48 48 38 62 124 97
'ACTL8 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.25 (Fisher's exact test), Q value = 0.58

Table S8482.  Gene #782: 'ACTL8 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ACTL8 MUTATED 5 0 1 3
ACTL8 WILD-TYPE 125 78 67 193
'ACTL8 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0806 (Fisher's exact test), Q value = 0.31

Table S8483.  Gene #782: 'ACTL8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ACTL8 MUTATED 2 0 0 2 1 0 3 1 0
ACTL8 WILD-TYPE 38 62 28 78 68 48 40 27 74
'ACTL8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.706 (Fisher's exact test), Q value = 0.98

Table S8484.  Gene #782: 'ACTL8 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
ACTL8 MUTATED 2 1 0 0
ACTL8 WILD-TYPE 31 30 27 19
'ACTL8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.843 (Fisher's exact test), Q value = 1

Table S8485.  Gene #782: 'ACTL8 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
ACTL8 MUTATED 2 0 0 1
ACTL8 WILD-TYPE 52 10 24 21
'CNTFR MUTATION STATUS' versus 'CN_CNMF'

P value = 0.252 (Fisher's exact test), Q value = 0.58

Table S8486.  Gene #783: 'CNTFR MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
CNTFR MUTATED 6 2 1 1
CNTFR WILD-TYPE 172 181 100 19
'CNTFR MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.906 (Fisher's exact test), Q value = 1

Table S8487.  Gene #783: 'CNTFR MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
CNTFR MUTATED 2 3 3
CNTFR WILD-TYPE 85 77 97
'CNTFR MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0707 (Fisher's exact test), Q value = 0.29

Table S8488.  Gene #783: 'CNTFR MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
CNTFR MUTATED 0 2 6
CNTFR WILD-TYPE 89 158 132
'CNTFR MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.563 (Fisher's exact test), Q value = 0.87

Table S8489.  Gene #783: 'CNTFR MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
CNTFR MUTATED 5 3 0
CNTFR WILD-TYPE 177 130 72
'CNTFR MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.542 (Fisher's exact test), Q value = 0.86

Table S8490.  Gene #783: 'CNTFR MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
CNTFR MUTATED 3 3 2 2
CNTFR WILD-TYPE 109 93 90 184
'CNTFR MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.161 (Fisher's exact test), Q value = 0.45

Table S8491.  Gene #783: 'CNTFR MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
CNTFR MUTATED 3 1 3 0 1 1 1
CNTFR WILD-TYPE 57 49 46 40 62 124 98
'CNTFR MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.285 (Fisher's exact test), Q value = 0.61

Table S8492.  Gene #783: 'CNTFR MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
CNTFR MUTATED 5 2 0 3
CNTFR WILD-TYPE 125 76 68 193
'CNTFR MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.936 (Fisher's exact test), Q value = 1

Table S8493.  Gene #783: 'CNTFR MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
CNTFR MUTATED 0 2 1 3 1 1 1 0 1
CNTFR WILD-TYPE 40 60 27 77 68 47 42 28 73
'CNTFR MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.135 (Fisher's exact test), Q value = 0.41

Table S8494.  Gene #783: 'CNTFR MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
CNTFR MUTATED 1 0 0 2
CNTFR WILD-TYPE 32 31 27 17
'CNTFR MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.447 (Fisher's exact test), Q value = 0.77

Table S8495.  Gene #783: 'CNTFR MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
CNTFR MUTATED 1 0 2 0
CNTFR WILD-TYPE 53 10 22 22
'OR4E2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0437 (Fisher's exact test), Q value = 0.22

Table S8496.  Gene #784: 'OR4E2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
OR4E2 MUTATED 5 0 0 0
OR4E2 WILD-TYPE 173 183 101 20

Figure S2394.  Get High-res Image Gene #784: 'OR4E2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'OR4E2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.196 (Fisher's exact test), Q value = 0.5

Table S8497.  Gene #784: 'OR4E2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
OR4E2 MUTATED 1 0 4
OR4E2 WILD-TYPE 86 80 96
'OR4E2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.297 (Fisher's exact test), Q value = 0.63

Table S8498.  Gene #784: 'OR4E2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
OR4E2 MUTATED 0 4 1
OR4E2 WILD-TYPE 89 156 137
'OR4E2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.132 (Fisher's exact test), Q value = 0.41

Table S8499.  Gene #784: 'OR4E2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
OR4E2 MUTATED 1 4 0
OR4E2 WILD-TYPE 181 129 72
'OR4E2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.115 (Fisher's exact test), Q value = 0.38

Table S8500.  Gene #784: 'OR4E2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
OR4E2 MUTATED 0 3 1 1
OR4E2 WILD-TYPE 112 93 91 185
'OR4E2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00122 (Fisher's exact test), Q value = 0.028

Table S8501.  Gene #784: 'OR4E2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
OR4E2 MUTATED 0 0 4 0 0 0 1
OR4E2 WILD-TYPE 60 50 45 40 63 125 98

Figure S2395.  Get High-res Image Gene #784: 'OR4E2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'OR4E2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.508 (Fisher's exact test), Q value = 0.83

Table S8502.  Gene #784: 'OR4E2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
OR4E2 MUTATED 3 0 0 2
OR4E2 WILD-TYPE 127 78 68 194
'OR4E2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.332 (Fisher's exact test), Q value = 0.66

Table S8503.  Gene #784: 'OR4E2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
OR4E2 MUTATED 1 0 0 0 1 0 2 0 1
OR4E2 WILD-TYPE 39 62 28 80 68 48 41 28 73
'PPP1R12A MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.627 (Fisher's exact test), Q value = 0.92

Table S8504.  Gene #785: 'PPP1R12A MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
PPP1R12A MUTATED 1 1 0 1
PPP1R12A WILD-TYPE 45 57 64 42
'PPP1R12A MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.255 (Fisher's exact test), Q value = 0.58

Table S8505.  Gene #785: 'PPP1R12A MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
PPP1R12A MUTATED 2 1 0
PPP1R12A WILD-TYPE 49 82 77
'PPP1R12A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.409 (Fisher's exact test), Q value = 0.74

Table S8506.  Gene #785: 'PPP1R12A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
PPP1R12A MUTATED 7 7 1 1
PPP1R12A WILD-TYPE 171 176 100 19
'PPP1R12A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.776 (Fisher's exact test), Q value = 1

Table S8507.  Gene #785: 'PPP1R12A MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
PPP1R12A MUTATED 4 5 4
PPP1R12A WILD-TYPE 83 75 96
'PPP1R12A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.492 (Fisher's exact test), Q value = 0.82

Table S8508.  Gene #785: 'PPP1R12A MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
PPP1R12A MUTATED 4 4 7
PPP1R12A WILD-TYPE 85 156 131
'PPP1R12A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.731 (Fisher's exact test), Q value = 1

Table S8509.  Gene #785: 'PPP1R12A MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
PPP1R12A MUTATED 9 4 2
PPP1R12A WILD-TYPE 173 129 70
'PPP1R12A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.666 (Fisher's exact test), Q value = 0.95

Table S8510.  Gene #785: 'PPP1R12A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
PPP1R12A MUTATED 4 4 4 4
PPP1R12A WILD-TYPE 108 92 88 182
'PPP1R12A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0446 (Fisher's exact test), Q value = 0.22

Table S8511.  Gene #785: 'PPP1R12A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
PPP1R12A MUTATED 5 2 4 1 0 2 2
PPP1R12A WILD-TYPE 55 48 45 39 63 123 97

Figure S2396.  Get High-res Image Gene #785: 'PPP1R12A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'PPP1R12A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.749 (Fisher's exact test), Q value = 1

Table S8512.  Gene #785: 'PPP1R12A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
PPP1R12A MUTATED 6 3 2 5
PPP1R12A WILD-TYPE 124 75 66 191
'PPP1R12A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.542 (Fisher's exact test), Q value = 0.86

Table S8513.  Gene #785: 'PPP1R12A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
PPP1R12A MUTATED 2 2 2 2 4 0 2 1 1
PPP1R12A WILD-TYPE 38 60 26 78 65 48 41 27 73
'PPP1R12A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0915 (Fisher's exact test), Q value = 0.33

Table S8514.  Gene #785: 'PPP1R12A MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
PPP1R12A MUTATED 2 0 1 3
PPP1R12A WILD-TYPE 31 31 26 16
'PPP1R12A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0829 (Fisher's exact test), Q value = 0.31

Table S8515.  Gene #785: 'PPP1R12A MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
PPP1R12A MUTATED 2 0 4 0
PPP1R12A WILD-TYPE 52 10 20 22
'ZNF721 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00273 (Fisher's exact test), Q value = 0.046

Table S8516.  Gene #786: 'ZNF721 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ZNF721 MUTATED 4 0 0 4
ZNF721 WILD-TYPE 42 58 64 39

Figure S2397.  Get High-res Image Gene #786: 'ZNF721 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'ZNF721 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.31 (Fisher's exact test), Q value = 0.64

Table S8517.  Gene #786: 'ZNF721 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ZNF721 MUTATED 4 2 2
ZNF721 WILD-TYPE 47 81 75
'ZNF721 MUTATION STATUS' versus 'CN_CNMF'

P value = 5e-05 (Fisher's exact test), Q value = 0.0032

Table S8518.  Gene #786: 'ZNF721 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ZNF721 MUTATED 15 0 1 0
ZNF721 WILD-TYPE 163 183 100 20

Figure S2398.  Get High-res Image Gene #786: 'ZNF721 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ZNF721 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.06 (Fisher's exact test), Q value = 0.27

Table S8519.  Gene #786: 'ZNF721 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ZNF721 MUTATED 6 1 1
ZNF721 WILD-TYPE 81 79 99
'ZNF721 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0221 (Fisher's exact test), Q value = 0.15

Table S8520.  Gene #786: 'ZNF721 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ZNF721 MUTATED 1 3 10
ZNF721 WILD-TYPE 88 157 128

Figure S2399.  Get High-res Image Gene #786: 'ZNF721 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'ZNF721 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.77 (Fisher's exact test), Q value = 1

Table S8521.  Gene #786: 'ZNF721 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ZNF721 MUTATED 8 4 2
ZNF721 WILD-TYPE 174 129 70
'ZNF721 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.3 (Fisher's exact test), Q value = 0.63

Table S8522.  Gene #786: 'ZNF721 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ZNF721 MUTATED 1 4 3 9
ZNF721 WILD-TYPE 111 92 89 177
'ZNF721 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0509 (Fisher's exact test), Q value = 0.24

Table S8523.  Gene #786: 'ZNF721 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ZNF721 MUTATED 2 2 3 0 1 1 8
ZNF721 WILD-TYPE 58 48 46 40 62 124 91
'ZNF721 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.073 (Fisher's exact test), Q value = 0.29

Table S8524.  Gene #786: 'ZNF721 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ZNF721 MUTATED 2 3 0 11
ZNF721 WILD-TYPE 128 75 68 185
'ZNF721 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.185 (Fisher's exact test), Q value = 0.49

Table S8525.  Gene #786: 'ZNF721 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ZNF721 MUTATED 1 3 2 2 6 0 0 0 2
ZNF721 WILD-TYPE 39 59 26 78 63 48 43 28 72
'ZNF721 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.138 (Fisher's exact test), Q value = 0.41

Table S8526.  Gene #786: 'ZNF721 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
ZNF721 MUTATED 1 0 0 2
ZNF721 WILD-TYPE 32 31 27 17
'ZNF721 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S8527.  Gene #786: 'ZNF721 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
ZNF721 MUTATED 2 0 1 0
ZNF721 WILD-TYPE 52 10 23 22
'KIFAP3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00458 (Fisher's exact test), Q value = 0.061

Table S8528.  Gene #787: 'KIFAP3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
KIFAP3 MUTATED 8 0 0 0
KIFAP3 WILD-TYPE 170 183 101 20

Figure S2400.  Get High-res Image Gene #787: 'KIFAP3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'KIFAP3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.253 (Fisher's exact test), Q value = 0.58

Table S8529.  Gene #787: 'KIFAP3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
KIFAP3 MUTATED 2 0 4
KIFAP3 WILD-TYPE 85 80 96
'KIFAP3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.153 (Fisher's exact test), Q value = 0.44

Table S8530.  Gene #787: 'KIFAP3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
KIFAP3 MUTATED 2 1 5
KIFAP3 WILD-TYPE 87 159 133
'KIFAP3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.895 (Fisher's exact test), Q value = 1

Table S8531.  Gene #787: 'KIFAP3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
KIFAP3 MUTATED 5 2 1
KIFAP3 WILD-TYPE 177 131 71
'KIFAP3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.177 (Fisher's exact test), Q value = 0.48

Table S8532.  Gene #787: 'KIFAP3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
KIFAP3 MUTATED 0 3 3 3
KIFAP3 WILD-TYPE 112 93 89 183
'KIFAP3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.032 (Fisher's exact test), Q value = 0.18

Table S8533.  Gene #787: 'KIFAP3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
KIFAP3 MUTATED 0 0 3 1 1 0 4
KIFAP3 WILD-TYPE 60 50 46 39 62 125 95

Figure S2401.  Get High-res Image Gene #787: 'KIFAP3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'KIFAP3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.491 (Fisher's exact test), Q value = 0.82

Table S8534.  Gene #787: 'KIFAP3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
KIFAP3 MUTATED 4 1 0 3
KIFAP3 WILD-TYPE 126 77 68 193
'KIFAP3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0242 (Fisher's exact test), Q value = 0.16

Table S8535.  Gene #787: 'KIFAP3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
KIFAP3 MUTATED 1 2 0 0 5 0 0 0 0
KIFAP3 WILD-TYPE 39 60 28 80 64 48 43 28 74

Figure S2402.  Get High-res Image Gene #787: 'KIFAP3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'SLC22A9 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.249 (Fisher's exact test), Q value = 0.57

Table S8536.  Gene #788: 'SLC22A9 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
SLC22A9 MUTATED 6 2 1 1
SLC22A9 WILD-TYPE 172 181 100 19
'SLC22A9 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.223 (Fisher's exact test), Q value = 0.54

Table S8537.  Gene #788: 'SLC22A9 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
SLC22A9 MUTATED 5 1 2
SLC22A9 WILD-TYPE 82 79 98
'SLC22A9 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.165 (Fisher's exact test), Q value = 0.46

Table S8538.  Gene #788: 'SLC22A9 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
SLC22A9 MUTATED 1 1 5
SLC22A9 WILD-TYPE 88 159 133
'SLC22A9 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0683 (Fisher's exact test), Q value = 0.28

Table S8539.  Gene #788: 'SLC22A9 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
SLC22A9 MUTATED 6 0 1
SLC22A9 WILD-TYPE 176 133 71
'SLC22A9 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0231 (Fisher's exact test), Q value = 0.15

Table S8540.  Gene #788: 'SLC22A9 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
SLC22A9 MUTATED 1 1 6 2
SLC22A9 WILD-TYPE 111 95 86 184

Figure S2403.  Get High-res Image Gene #788: 'SLC22A9 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'SLC22A9 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0644 (Fisher's exact test), Q value = 0.28

Table S8541.  Gene #788: 'SLC22A9 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
SLC22A9 MUTATED 0 1 4 1 2 1 1
SLC22A9 WILD-TYPE 60 49 45 39 61 124 98
'SLC22A9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.758 (Fisher's exact test), Q value = 1

Table S8542.  Gene #788: 'SLC22A9 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
SLC22A9 MUTATED 4 2 1 3
SLC22A9 WILD-TYPE 126 76 67 193
'SLC22A9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.479 (Fisher's exact test), Q value = 0.81

Table S8543.  Gene #788: 'SLC22A9 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
SLC22A9 MUTATED 2 2 0 2 3 0 1 0 0
SLC22A9 WILD-TYPE 38 60 28 78 66 48 42 28 74
'SLC22A9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.491 (Fisher's exact test), Q value = 0.82

Table S8544.  Gene #788: 'SLC22A9 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
SLC22A9 MUTATED 3 1 0 1
SLC22A9 WILD-TYPE 30 30 27 18
'SLC22A9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S8545.  Gene #788: 'SLC22A9 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
SLC22A9 MUTATED 3 0 1 1
SLC22A9 WILD-TYPE 51 10 23 21
'C5ORF22 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.336 (Fisher's exact test), Q value = 0.66

Table S8546.  Gene #789: 'C5ORF22 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
C5ORF22 MUTATED 6 3 1 1
C5ORF22 WILD-TYPE 172 180 100 19
'C5ORF22 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.836 (Fisher's exact test), Q value = 1

Table S8547.  Gene #789: 'C5ORF22 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
C5ORF22 MUTATED 2 3 4
C5ORF22 WILD-TYPE 85 77 96
'C5ORF22 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.51 (Fisher's exact test), Q value = 0.83

Table S8548.  Gene #789: 'C5ORF22 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
C5ORF22 MUTATED 1 3 5
C5ORF22 WILD-TYPE 88 157 133
'C5ORF22 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.912 (Fisher's exact test), Q value = 1

Table S8549.  Gene #789: 'C5ORF22 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
C5ORF22 MUTATED 4 3 2
C5ORF22 WILD-TYPE 178 130 70
'C5ORF22 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.155 (Fisher's exact test), Q value = 0.44

Table S8550.  Gene #789: 'C5ORF22 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
C5ORF22 MUTATED 3 5 1 2
C5ORF22 WILD-TYPE 109 91 91 184
'C5ORF22 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.255 (Fisher's exact test), Q value = 0.58

Table S8551.  Gene #789: 'C5ORF22 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
C5ORF22 MUTATED 2 2 3 1 1 1 1
C5ORF22 WILD-TYPE 58 48 46 39 62 124 98
'C5ORF22 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.325 (Fisher's exact test), Q value = 0.65

Table S8552.  Gene #789: 'C5ORF22 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
C5ORF22 MUTATED 6 1 1 3
C5ORF22 WILD-TYPE 124 77 67 193
'C5ORF22 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.133 (Fisher's exact test), Q value = 0.41

Table S8553.  Gene #789: 'C5ORF22 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
C5ORF22 MUTATED 1 1 1 0 3 2 1 2 0
C5ORF22 WILD-TYPE 39 61 27 80 66 46 42 26 74
'FOXN3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0638 (Fisher's exact test), Q value = 0.27

Table S8554.  Gene #790: 'FOXN3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
FOXN3 MUTATED 1 0 0 2
FOXN3 WILD-TYPE 45 58 64 41
'FOXN3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.013 (Fisher's exact test), Q value = 0.11

Table S8555.  Gene #790: 'FOXN3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
FOXN3 MUTATED 3 0 0
FOXN3 WILD-TYPE 48 83 77

Figure S2404.  Get High-res Image Gene #790: 'FOXN3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'FOXN3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0329 (Fisher's exact test), Q value = 0.19

Table S8556.  Gene #790: 'FOXN3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
FOXN3 MUTATED 9 1 1 0
FOXN3 WILD-TYPE 169 182 100 20

Figure S2405.  Get High-res Image Gene #790: 'FOXN3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'FOXN3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.115 (Fisher's exact test), Q value = 0.38

Table S8557.  Gene #790: 'FOXN3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
FOXN3 MUTATED 3 0 5
FOXN3 WILD-TYPE 84 80 95
'FOXN3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0861 (Fisher's exact test), Q value = 0.32

Table S8558.  Gene #790: 'FOXN3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
FOXN3 MUTATED 2 1 6
FOXN3 WILD-TYPE 87 159 132
'FOXN3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.239 (Fisher's exact test), Q value = 0.56

Table S8559.  Gene #790: 'FOXN3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
FOXN3 MUTATED 5 1 3
FOXN3 WILD-TYPE 177 132 69
'FOXN3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.333 (Fisher's exact test), Q value = 0.66

Table S8560.  Gene #790: 'FOXN3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
FOXN3 MUTATED 1 4 3 3
FOXN3 WILD-TYPE 111 92 89 183
'FOXN3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0303 (Fisher's exact test), Q value = 0.18

Table S8561.  Gene #790: 'FOXN3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
FOXN3 MUTATED 1 0 4 1 2 0 3
FOXN3 WILD-TYPE 59 50 45 39 61 125 96

Figure S2406.  Get High-res Image Gene #790: 'FOXN3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'FOXN3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.426 (Fisher's exact test), Q value = 0.75

Table S8562.  Gene #790: 'FOXN3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
FOXN3 MUTATED 5 2 0 4
FOXN3 WILD-TYPE 125 76 68 192
'FOXN3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00376 (Fisher's exact test), Q value = 0.056

Table S8563.  Gene #790: 'FOXN3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
FOXN3 MUTATED 1 2 2 0 6 0 0 0 0
FOXN3 WILD-TYPE 39 60 26 80 63 48 43 28 74

Figure S2407.  Get High-res Image Gene #790: 'FOXN3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'IL2RG MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00448 (Fisher's exact test), Q value = 0.061

Table S8564.  Gene #791: 'IL2RG MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
IL2RG MUTATED 8 0 0 0
IL2RG WILD-TYPE 170 183 101 20

Figure S2408.  Get High-res Image Gene #791: 'IL2RG MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'IL2RG MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.142 (Fisher's exact test), Q value = 0.42

Table S8565.  Gene #791: 'IL2RG MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
IL2RG MUTATED 4 0 4
IL2RG WILD-TYPE 83 80 96
'IL2RG MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.222 (Fisher's exact test), Q value = 0.54

Table S8566.  Gene #791: 'IL2RG MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
IL2RG MUTATED 3 1 4
IL2RG WILD-TYPE 86 159 134
'IL2RG MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0689 (Fisher's exact test), Q value = 0.28

Table S8567.  Gene #791: 'IL2RG MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
IL2RG MUTATED 6 0 2
IL2RG WILD-TYPE 176 133 70
'IL2RG MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00095 (Fisher's exact test), Q value = 0.024

Table S8568.  Gene #791: 'IL2RG MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
IL2RG MUTATED 0 4 4 0
IL2RG WILD-TYPE 112 92 88 186

Figure S2409.  Get High-res Image Gene #791: 'IL2RG MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'IL2RG MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 5e-05 (Fisher's exact test), Q value = 0.0032

Table S8569.  Gene #791: 'IL2RG MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
IL2RG MUTATED 0 1 6 0 1 0 0
IL2RG WILD-TYPE 60 49 43 40 62 125 99

Figure S2410.  Get High-res Image Gene #791: 'IL2RG MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'IL2RG MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.33 (Fisher's exact test), Q value = 0.66

Table S8570.  Gene #791: 'IL2RG MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
IL2RG MUTATED 4 2 0 2
IL2RG WILD-TYPE 126 76 68 194
'IL2RG MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.115 (Fisher's exact test), Q value = 0.38

Table S8571.  Gene #791: 'IL2RG MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
IL2RG MUTATED 1 2 0 0 4 0 1 0 0
IL2RG WILD-TYPE 39 60 28 80 65 48 42 28 74
'IL2RG MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.025 (Fisher's exact test), Q value = 0.16

Table S8572.  Gene #791: 'IL2RG MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
IL2RG MUTATED 1 0 0 3
IL2RG WILD-TYPE 32 31 27 16

Figure S2411.  Get High-res Image Gene #791: 'IL2RG MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'IL2RG MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.671 (Fisher's exact test), Q value = 0.95

Table S8573.  Gene #791: 'IL2RG MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
IL2RG MUTATED 2 0 2 0
IL2RG WILD-TYPE 52 10 22 22
'CARD6 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0225 (Fisher's exact test), Q value = 0.15

Table S8574.  Gene #792: 'CARD6 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
CARD6 MUTATED 2 0 0 3
CARD6 WILD-TYPE 44 58 64 40

Figure S2412.  Get High-res Image Gene #792: 'CARD6 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'CARD6 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.637 (Fisher's exact test), Q value = 0.93

Table S8575.  Gene #792: 'CARD6 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
CARD6 MUTATED 2 1 2
CARD6 WILD-TYPE 49 82 75
'CARD6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0951 (Fisher's exact test), Q value = 0.34

Table S8576.  Gene #792: 'CARD6 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
CARD6 MUTATED 10 4 2 2
CARD6 WILD-TYPE 168 179 99 18
'CARD6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.813 (Fisher's exact test), Q value = 1

Table S8577.  Gene #792: 'CARD6 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
CARD6 MUTATED 5 3 4
CARD6 WILD-TYPE 82 77 96
'CARD6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.85 (Fisher's exact test), Q value = 1

Table S8578.  Gene #792: 'CARD6 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
CARD6 MUTATED 3 8 5
CARD6 WILD-TYPE 86 152 133
'CARD6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.944 (Fisher's exact test), Q value = 1

Table S8579.  Gene #792: 'CARD6 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
CARD6 MUTATED 7 6 3
CARD6 WILD-TYPE 175 127 69
'CARD6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.517 (Fisher's exact test), Q value = 0.84

Table S8580.  Gene #792: 'CARD6 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
CARD6 MUTATED 3 3 6 6
CARD6 WILD-TYPE 109 93 86 180
'CARD6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0407 (Fisher's exact test), Q value = 0.21

Table S8581.  Gene #792: 'CARD6 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
CARD6 MUTATED 2 1 6 2 2 1 4
CARD6 WILD-TYPE 58 49 43 38 61 124 95

Figure S2413.  Get High-res Image Gene #792: 'CARD6 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CARD6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.87 (Fisher's exact test), Q value = 1

Table S8582.  Gene #792: 'CARD6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
CARD6 MUTATED 4 4 2 8
CARD6 WILD-TYPE 126 74 66 188
'CARD6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.353 (Fisher's exact test), Q value = 0.68

Table S8583.  Gene #792: 'CARD6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
CARD6 MUTATED 1 4 2 2 5 0 2 1 1
CARD6 WILD-TYPE 39 58 26 78 64 48 41 27 73
'CARD6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.768 (Fisher's exact test), Q value = 1

Table S8584.  Gene #792: 'CARD6 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
CARD6 MUTATED 2 1 2 2
CARD6 WILD-TYPE 31 30 25 17
'CARD6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.359 (Fisher's exact test), Q value = 0.69

Table S8585.  Gene #792: 'CARD6 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
CARD6 MUTATED 2 1 3 1
CARD6 WILD-TYPE 52 9 21 21
'BAZ2B MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0264 (Fisher's exact test), Q value = 0.16

Table S8586.  Gene #793: 'BAZ2B MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
BAZ2B MUTATED 3 0 0 2
BAZ2B WILD-TYPE 43 58 64 41

Figure S2414.  Get High-res Image Gene #793: 'BAZ2B MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'BAZ2B MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.253 (Fisher's exact test), Q value = 0.58

Table S8587.  Gene #793: 'BAZ2B MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
BAZ2B MUTATED 3 1 1
BAZ2B WILD-TYPE 48 82 76
'BAZ2B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.154 (Fisher's exact test), Q value = 0.44

Table S8588.  Gene #793: 'BAZ2B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
BAZ2B MUTATED 12 4 3 0
BAZ2B WILD-TYPE 166 179 98 20
'BAZ2B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.832 (Fisher's exact test), Q value = 1

Table S8589.  Gene #793: 'BAZ2B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
BAZ2B MUTATED 5 3 6
BAZ2B WILD-TYPE 82 77 94
'BAZ2B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.185 (Fisher's exact test), Q value = 0.49

Table S8590.  Gene #793: 'BAZ2B MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
BAZ2B MUTATED 1 8 8
BAZ2B WILD-TYPE 88 152 130
'BAZ2B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.61 (Fisher's exact test), Q value = 0.91

Table S8591.  Gene #793: 'BAZ2B MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
BAZ2B MUTATED 9 4 4
BAZ2B WILD-TYPE 173 129 68
'BAZ2B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.301 (Fisher's exact test), Q value = 0.63

Table S8592.  Gene #793: 'BAZ2B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
BAZ2B MUTATED 2 6 5 6
BAZ2B WILD-TYPE 110 90 87 180
'BAZ2B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0206 (Fisher's exact test), Q value = 0.14

Table S8593.  Gene #793: 'BAZ2B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
BAZ2B MUTATED 3 2 5 2 2 0 5
BAZ2B WILD-TYPE 57 48 44 38 61 125 94

Figure S2415.  Get High-res Image Gene #793: 'BAZ2B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'BAZ2B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.972 (Fisher's exact test), Q value = 1

Table S8594.  Gene #793: 'BAZ2B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
BAZ2B MUTATED 6 3 2 8
BAZ2B WILD-TYPE 124 75 66 188
'BAZ2B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0376 (Fisher's exact test), Q value = 0.2

Table S8595.  Gene #793: 'BAZ2B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
BAZ2B MUTATED 0 4 2 2 7 0 3 0 1
BAZ2B WILD-TYPE 40 58 26 78 62 48 40 28 73

Figure S2416.  Get High-res Image Gene #793: 'BAZ2B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'BAZ2B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.628 (Fisher's exact test), Q value = 0.92

Table S8596.  Gene #793: 'BAZ2B MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
BAZ2B MUTATED 0 1 1 1
BAZ2B WILD-TYPE 33 30 26 18
'BAZ2B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.312 (Fisher's exact test), Q value = 0.64

Table S8597.  Gene #793: 'BAZ2B MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
BAZ2B MUTATED 1 1 1 0
BAZ2B WILD-TYPE 53 9 23 22
'ZNF384 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.59 (Fisher's exact test), Q value = 0.89

Table S8598.  Gene #794: 'ZNF384 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ZNF384 MUTATED 5 2 1 0
ZNF384 WILD-TYPE 173 181 100 20
'ZNF384 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.113 (Fisher's exact test), Q value = 0.37

Table S8599.  Gene #794: 'ZNF384 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ZNF384 MUTATED 3 0 5
ZNF384 WILD-TYPE 84 80 95
'ZNF384 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0722 (Fisher's exact test), Q value = 0.29

Table S8600.  Gene #794: 'ZNF384 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ZNF384 MUTATED 0 2 6
ZNF384 WILD-TYPE 89 158 132
'ZNF384 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.564 (Fisher's exact test), Q value = 0.87

Table S8601.  Gene #794: 'ZNF384 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ZNF384 MUTATED 5 3 0
ZNF384 WILD-TYPE 177 130 72
'ZNF384 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.161 (Fisher's exact test), Q value = 0.45

Table S8602.  Gene #794: 'ZNF384 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ZNF384 MUTATED 2 4 2 1
ZNF384 WILD-TYPE 110 92 90 185
'ZNF384 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00844 (Fisher's exact test), Q value = 0.086

Table S8603.  Gene #794: 'ZNF384 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ZNF384 MUTATED 1 2 4 1 0 0 1
ZNF384 WILD-TYPE 59 48 45 39 63 125 98

Figure S2417.  Get High-res Image Gene #794: 'ZNF384 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ZNF384 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.195 (Fisher's exact test), Q value = 0.5

Table S8604.  Gene #794: 'ZNF384 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ZNF384 MUTATED 4 3 0 2
ZNF384 WILD-TYPE 126 75 68 194
'ZNF384 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0948 (Fisher's exact test), Q value = 0.34

Table S8605.  Gene #794: 'ZNF384 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ZNF384 MUTATED 0 3 1 0 4 0 0 0 1
ZNF384 WILD-TYPE 40 59 27 80 65 48 43 28 73
'ZNF384 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.871 (Fisher's exact test), Q value = 1

Table S8606.  Gene #794: 'ZNF384 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
ZNF384 MUTATED 1 1 0 1
ZNF384 WILD-TYPE 32 30 27 18
'ZNF384 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S8607.  Gene #794: 'ZNF384 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
ZNF384 MUTATED 2 0 1 0
ZNF384 WILD-TYPE 52 10 23 22
'MORC2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.222 (Fisher's exact test), Q value = 0.54

Table S8608.  Gene #795: 'MORC2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
MORC2 MUTATED 2 1 0 2
MORC2 WILD-TYPE 44 57 64 41
'MORC2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.635 (Fisher's exact test), Q value = 0.93

Table S8609.  Gene #795: 'MORC2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
MORC2 MUTATED 2 1 2
MORC2 WILD-TYPE 49 82 75
'MORC2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0161 (Fisher's exact test), Q value = 0.13

Table S8610.  Gene #795: 'MORC2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
MORC2 MUTATED 9 2 1 2
MORC2 WILD-TYPE 169 181 100 18

Figure S2418.  Get High-res Image Gene #795: 'MORC2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'MORC2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.398 (Fisher's exact test), Q value = 0.72

Table S8611.  Gene #795: 'MORC2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
MORC2 MUTATED 5 2 2
MORC2 WILD-TYPE 82 78 98
'MORC2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.392 (Fisher's exact test), Q value = 0.72

Table S8612.  Gene #795: 'MORC2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
MORC2 MUTATED 1 7 4
MORC2 WILD-TYPE 88 153 134
'MORC2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.541 (Fisher's exact test), Q value = 0.86

Table S8613.  Gene #795: 'MORC2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
MORC2 MUTATED 5 6 1
MORC2 WILD-TYPE 177 127 71
'MORC2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.451 (Fisher's exact test), Q value = 0.78

Table S8614.  Gene #795: 'MORC2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
MORC2 MUTATED 1 3 4 6
MORC2 WILD-TYPE 111 93 88 180
'MORC2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0356 (Fisher's exact test), Q value = 0.2

Table S8615.  Gene #795: 'MORC2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
MORC2 MUTATED 2 1 5 1 0 1 4
MORC2 WILD-TYPE 58 49 44 39 63 124 95

Figure S2419.  Get High-res Image Gene #795: 'MORC2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'MORC2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.641 (Fisher's exact test), Q value = 0.93

Table S8616.  Gene #795: 'MORC2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
MORC2 MUTATED 3 1 1 8
MORC2 WILD-TYPE 127 77 67 188
'MORC2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.312 (Fisher's exact test), Q value = 0.64

Table S8617.  Gene #795: 'MORC2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
MORC2 MUTATED 2 2 2 1 4 0 0 0 2
MORC2 WILD-TYPE 38 60 26 79 65 48 43 28 72
'MORC2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.27 (Fisher's exact test), Q value = 0.59

Table S8618.  Gene #795: 'MORC2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
MORC2 MUTATED 1 0 1 2
MORC2 WILD-TYPE 32 31 26 17
'MORC2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.673 (Fisher's exact test), Q value = 0.96

Table S8619.  Gene #795: 'MORC2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
MORC2 MUTATED 2 0 2 0
MORC2 WILD-TYPE 52 10 22 22
'OTX2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.165 (Fisher's exact test), Q value = 0.46

Table S8620.  Gene #796: 'OTX2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
OTX2 MUTATED 6 2 0 0
OTX2 WILD-TYPE 172 181 101 20
'OTX2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.053 (Fisher's exact test), Q value = 0.25

Table S8621.  Gene #796: 'OTX2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
OTX2 MUTATED 0 1 5
OTX2 WILD-TYPE 87 79 95
'OTX2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S8622.  Gene #796: 'OTX2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
OTX2 MUTATED 1 3 2
OTX2 WILD-TYPE 88 157 136
'OTX2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0885 (Fisher's exact test), Q value = 0.32

Table S8623.  Gene #796: 'OTX2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
OTX2 MUTATED 1 2 3
OTX2 WILD-TYPE 181 131 69
'OTX2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.256 (Fisher's exact test), Q value = 0.58

Table S8624.  Gene #796: 'OTX2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
OTX2 MUTATED 1 4 1 2
OTX2 WILD-TYPE 111 92 91 184
'OTX2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0585 (Fisher's exact test), Q value = 0.26

Table S8625.  Gene #796: 'OTX2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
OTX2 MUTATED 0 1 3 2 0 1 1
OTX2 WILD-TYPE 60 49 46 38 63 124 98
'OTX2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.707 (Fisher's exact test), Q value = 0.98

Table S8626.  Gene #796: 'OTX2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
OTX2 MUTATED 3 0 1 4
OTX2 WILD-TYPE 127 78 67 192
'OTX2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.353 (Fisher's exact test), Q value = 0.68

Table S8627.  Gene #796: 'OTX2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
OTX2 MUTATED 1 0 1 2 3 0 1 0 0
OTX2 WILD-TYPE 39 62 27 78 66 48 42 28 74
'CYP4A22 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0328 (Fisher's exact test), Q value = 0.18

Table S8628.  Gene #797: 'CYP4A22 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
CYP4A22 MUTATED 9 3 0 1
CYP4A22 WILD-TYPE 169 180 101 19

Figure S2420.  Get High-res Image Gene #797: 'CYP4A22 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'CYP4A22 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S8629.  Gene #797: 'CYP4A22 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
CYP4A22 MUTATED 4 3 4
CYP4A22 WILD-TYPE 83 77 96
'CYP4A22 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.187 (Fisher's exact test), Q value = 0.49

Table S8630.  Gene #797: 'CYP4A22 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
CYP4A22 MUTATED 0 6 4
CYP4A22 WILD-TYPE 89 154 134
'CYP4A22 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.15 (Fisher's exact test), Q value = 0.43

Table S8631.  Gene #797: 'CYP4A22 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
CYP4A22 MUTATED 4 6 0
CYP4A22 WILD-TYPE 178 127 72
'CYP4A22 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.149 (Fisher's exact test), Q value = 0.43

Table S8632.  Gene #797: 'CYP4A22 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
CYP4A22 MUTATED 6 2 3 2
CYP4A22 WILD-TYPE 106 94 89 184
'CYP4A22 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.156 (Fisher's exact test), Q value = 0.45

Table S8633.  Gene #797: 'CYP4A22 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
CYP4A22 MUTATED 4 1 2 1 3 1 1
CYP4A22 WILD-TYPE 56 49 47 39 60 124 98
'CYP4A22 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0792 (Fisher's exact test), Q value = 0.3

Table S8634.  Gene #797: 'CYP4A22 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
CYP4A22 MUTATED 4 5 2 2
CYP4A22 WILD-TYPE 126 73 66 194
'CYP4A22 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0427 (Fisher's exact test), Q value = 0.22

Table S8635.  Gene #797: 'CYP4A22 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
CYP4A22 MUTATED 2 3 2 0 2 3 0 1 0
CYP4A22 WILD-TYPE 38 59 26 80 67 45 43 27 74

Figure S2421.  Get High-res Image Gene #797: 'CYP4A22 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'CYP4A22 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.627 (Fisher's exact test), Q value = 0.92

Table S8636.  Gene #797: 'CYP4A22 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
CYP4A22 MUTATED 2 2 0 1
CYP4A22 WILD-TYPE 31 29 27 18
'CYP4A22 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.13 (Fisher's exact test), Q value = 0.4

Table S8637.  Gene #797: 'CYP4A22 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
CYP4A22 MUTATED 1 0 1 3
CYP4A22 WILD-TYPE 53 10 23 19
'C14ORF102 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0013 (Fisher's exact test), Q value = 0.029

Table S8638.  Gene #798: 'C14ORF102 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
C14ORF102 MUTATED 2 0 0 5
C14ORF102 WILD-TYPE 44 58 64 38

Figure S2422.  Get High-res Image Gene #798: 'C14ORF102 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'C14ORF102 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.304 (Fisher's exact test), Q value = 0.63

Table S8639.  Gene #798: 'C14ORF102 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
C14ORF102 MUTATED 3 1 3
C14ORF102 WILD-TYPE 48 82 74
'C14ORF102 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00016 (Fisher's exact test), Q value = 0.0072

Table S8640.  Gene #798: 'C14ORF102 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
C14ORF102 MUTATED 16 1 1 0
C14ORF102 WILD-TYPE 162 182 100 20

Figure S2423.  Get High-res Image Gene #798: 'C14ORF102 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'C14ORF102 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.935 (Fisher's exact test), Q value = 1

Table S8641.  Gene #798: 'C14ORF102 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
C14ORF102 MUTATED 4 3 5
C14ORF102 WILD-TYPE 83 77 95
'C14ORF102 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S8642.  Gene #798: 'C14ORF102 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
C14ORF102 MUTATED 3 7 6
C14ORF102 WILD-TYPE 86 153 132
'C14ORF102 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.75 (Fisher's exact test), Q value = 1

Table S8643.  Gene #798: 'C14ORF102 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
C14ORF102 MUTATED 7 7 2
C14ORF102 WILD-TYPE 175 126 70
'C14ORF102 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.908 (Fisher's exact test), Q value = 1

Table S8644.  Gene #798: 'C14ORF102 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
C14ORF102 MUTATED 4 5 3 7
C14ORF102 WILD-TYPE 108 91 89 179
'C14ORF102 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00518 (Fisher's exact test), Q value = 0.065

Table S8645.  Gene #798: 'C14ORF102 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
C14ORF102 MUTATED 4 1 5 0 3 0 6
C14ORF102 WILD-TYPE 56 49 44 40 60 125 93

Figure S2424.  Get High-res Image Gene #798: 'C14ORF102 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'C14ORF102 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.197 (Fisher's exact test), Q value = 0.5

Table S8646.  Gene #798: 'C14ORF102 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
C14ORF102 MUTATED 6 5 0 8
C14ORF102 WILD-TYPE 124 73 68 188
'C14ORF102 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00196 (Fisher's exact test), Q value = 0.037

Table S8647.  Gene #798: 'C14ORF102 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
C14ORF102 MUTATED 1 4 2 0 9 2 0 0 1
C14ORF102 WILD-TYPE 39 58 26 80 60 46 43 28 73

Figure S2425.  Get High-res Image Gene #798: 'C14ORF102 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'C14ORF102 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0838 (Fisher's exact test), Q value = 0.31

Table S8648.  Gene #798: 'C14ORF102 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
C14ORF102 MUTATED 0 1 0 2
C14ORF102 WILD-TYPE 33 30 27 17
'C14ORF102 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.311 (Fisher's exact test), Q value = 0.64

Table S8649.  Gene #798: 'C14ORF102 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
C14ORF102 MUTATED 1 1 1 0
C14ORF102 WILD-TYPE 53 9 23 22
'LPGAT1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.614 (Fisher's exact test), Q value = 0.91

Table S8650.  Gene #799: 'LPGAT1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
LPGAT1 MUTATED 1 3 0 0
LPGAT1 WILD-TYPE 177 180 101 20
'LPGAT1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.11 (Fisher's exact test), Q value = 0.37

Table S8651.  Gene #799: 'LPGAT1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
LPGAT1 MUTATED 0 3 1
LPGAT1 WILD-TYPE 87 77 99
'LPGAT1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.831 (Fisher's exact test), Q value = 1

Table S8652.  Gene #799: 'LPGAT1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
LPGAT1 MUTATED 1 1 2
LPGAT1 WILD-TYPE 88 159 136
'LPGAT1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.673 (Fisher's exact test), Q value = 0.95

Table S8653.  Gene #799: 'LPGAT1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
LPGAT1 MUTATED 3 1 0
LPGAT1 WILD-TYPE 179 132 72
'LPGAT1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0776 (Fisher's exact test), Q value = 0.3

Table S8654.  Gene #799: 'LPGAT1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
LPGAT1 MUTATED 2 0 2 0
LPGAT1 WILD-TYPE 110 96 90 186
'LPGAT1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0112 (Fisher's exact test), Q value = 0.1

Table S8655.  Gene #799: 'LPGAT1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
LPGAT1 MUTATED 3 0 1 0 0 0 0
LPGAT1 WILD-TYPE 57 50 48 40 63 125 99

Figure S2426.  Get High-res Image Gene #799: 'LPGAT1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'LPGAT1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0279 (Fisher's exact test), Q value = 0.17

Table S8656.  Gene #799: 'LPGAT1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
LPGAT1 MUTATED 4 0 0 0
LPGAT1 WILD-TYPE 126 78 68 196

Figure S2427.  Get High-res Image Gene #799: 'LPGAT1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'LPGAT1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.527 (Fisher's exact test), Q value = 0.85

Table S8657.  Gene #799: 'LPGAT1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
LPGAT1 MUTATED 1 0 0 1 0 1 1 0 0
LPGAT1 WILD-TYPE 39 62 28 79 69 47 42 28 74
'LPGAT1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0838 (Fisher's exact test), Q value = 0.31

Table S8658.  Gene #799: 'LPGAT1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
LPGAT1 MUTATED 0 1 0 2
LPGAT1 WILD-TYPE 33 30 27 17
'LPGAT1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.841 (Fisher's exact test), Q value = 1

Table S8659.  Gene #799: 'LPGAT1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
LPGAT1 MUTATED 2 0 0 1
LPGAT1 WILD-TYPE 52 10 24 21
'MAGEC1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.39 (Fisher's exact test), Q value = 0.72

Table S8660.  Gene #800: 'MAGEC1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
MAGEC1 MUTATED 4 1 3 3
MAGEC1 WILD-TYPE 42 57 61 40
'MAGEC1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.353 (Fisher's exact test), Q value = 0.68

Table S8661.  Gene #800: 'MAGEC1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
MAGEC1 MUTATED 4 5 2
MAGEC1 WILD-TYPE 47 78 75
'MAGEC1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.478 (Fisher's exact test), Q value = 0.81

Table S8662.  Gene #800: 'MAGEC1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
MAGEC1 MUTATED 15 10 5 2
MAGEC1 WILD-TYPE 163 173 96 18
'MAGEC1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.24 (Fisher's exact test), Q value = 0.56

Table S8663.  Gene #800: 'MAGEC1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
MAGEC1 MUTATED 5 5 12
MAGEC1 WILD-TYPE 82 75 88
'MAGEC1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.196 (Fisher's exact test), Q value = 0.5

Table S8664.  Gene #800: 'MAGEC1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
MAGEC1 MUTATED 2 12 10
MAGEC1 WILD-TYPE 87 148 128
'MAGEC1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.925 (Fisher's exact test), Q value = 1

Table S8665.  Gene #800: 'MAGEC1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
MAGEC1 MUTATED 11 8 5
MAGEC1 WILD-TYPE 171 125 67
'MAGEC1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.384 (Fisher's exact test), Q value = 0.71

Table S8666.  Gene #800: 'MAGEC1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
MAGEC1 MUTATED 7 8 9 9
MAGEC1 WILD-TYPE 105 88 83 177
'MAGEC1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.184 (Fisher's exact test), Q value = 0.48

Table S8667.  Gene #800: 'MAGEC1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
MAGEC1 MUTATED 9 4 3 2 4 4 7
MAGEC1 WILD-TYPE 51 46 46 38 59 121 92
'MAGEC1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.347 (Fisher's exact test), Q value = 0.67

Table S8668.  Gene #800: 'MAGEC1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
MAGEC1 MUTATED 13 4 5 10
MAGEC1 WILD-TYPE 117 74 63 186
'MAGEC1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.191 (Fisher's exact test), Q value = 0.49

Table S8669.  Gene #800: 'MAGEC1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
MAGEC1 MUTATED 2 4 6 8 4 3 1 1 3
MAGEC1 WILD-TYPE 38 58 22 72 65 45 42 27 71
'MAGEC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.63 (Fisher's exact test), Q value = 0.93

Table S8670.  Gene #800: 'MAGEC1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
MAGEC1 MUTATED 4 1 2 1
MAGEC1 WILD-TYPE 29 30 25 18
'MAGEC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0674 (Fisher's exact test), Q value = 0.28

Table S8671.  Gene #800: 'MAGEC1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
MAGEC1 MUTATED 2 0 5 1
MAGEC1 WILD-TYPE 52 10 19 21
'EEA1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.699 (Fisher's exact test), Q value = 0.97

Table S8672.  Gene #801: 'EEA1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
EEA1 MUTATED 2 1 1 2
EEA1 WILD-TYPE 44 57 63 41
'EEA1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.878 (Fisher's exact test), Q value = 1

Table S8673.  Gene #801: 'EEA1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
EEA1 MUTATED 2 2 2
EEA1 WILD-TYPE 49 81 75
'EEA1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00557 (Fisher's exact test), Q value = 0.068

Table S8674.  Gene #801: 'EEA1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
EEA1 MUTATED 13 2 1 0
EEA1 WILD-TYPE 165 181 100 20

Figure S2428.  Get High-res Image Gene #801: 'EEA1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'EEA1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.072 (Fisher's exact test), Q value = 0.29

Table S8675.  Gene #801: 'EEA1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
EEA1 MUTATED 5 0 5
EEA1 WILD-TYPE 82 80 95
'EEA1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.892 (Fisher's exact test), Q value = 1

Table S8676.  Gene #801: 'EEA1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
EEA1 MUTATED 4 6 5
EEA1 WILD-TYPE 85 154 133
'EEA1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.54 (Fisher's exact test), Q value = 0.86

Table S8677.  Gene #801: 'EEA1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
EEA1 MUTATED 5 7 3
EEA1 WILD-TYPE 177 126 69
'EEA1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.197 (Fisher's exact test), Q value = 0.5

Table S8678.  Gene #801: 'EEA1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
EEA1 MUTATED 1 6 3 6
EEA1 WILD-TYPE 111 90 89 180
'EEA1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0429 (Fisher's exact test), Q value = 0.22

Table S8679.  Gene #801: 'EEA1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
EEA1 MUTATED 1 1 5 1 1 1 6
EEA1 WILD-TYPE 59 49 44 39 62 124 93

Figure S2429.  Get High-res Image Gene #801: 'EEA1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'EEA1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.231 (Fisher's exact test), Q value = 0.55

Table S8680.  Gene #801: 'EEA1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
EEA1 MUTATED 5 1 0 9
EEA1 WILD-TYPE 125 77 68 187
'EEA1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.148 (Fisher's exact test), Q value = 0.43

Table S8681.  Gene #801: 'EEA1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
EEA1 MUTATED 2 3 1 1 6 0 0 0 2
EEA1 WILD-TYPE 38 59 27 79 63 48 43 28 72
'ADAM22 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0503 (Fisher's exact test), Q value = 0.24

Table S8682.  Gene #802: 'ADAM22 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ADAM22 MUTATED 0 0 1 3
ADAM22 WILD-TYPE 46 58 63 40
'ADAM22 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.178 (Fisher's exact test), Q value = 0.48

Table S8683.  Gene #802: 'ADAM22 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ADAM22 MUTATED 2 0 2
ADAM22 WILD-TYPE 49 83 75
'ADAM22 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0156 (Fisher's exact test), Q value = 0.12

Table S8684.  Gene #802: 'ADAM22 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ADAM22 MUTATED 7 0 3 1
ADAM22 WILD-TYPE 171 183 98 19

Figure S2430.  Get High-res Image Gene #802: 'ADAM22 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ADAM22 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.07 (Fisher's exact test), Q value = 0.29

Table S8685.  Gene #802: 'ADAM22 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ADAM22 MUTATED 5 0 2
ADAM22 WILD-TYPE 82 80 98
'ADAM22 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.428 (Fisher's exact test), Q value = 0.76

Table S8686.  Gene #802: 'ADAM22 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ADAM22 MUTATED 2 3 6
ADAM22 WILD-TYPE 87 157 132
'ADAM22 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.56 (Fisher's exact test), Q value = 0.87

Table S8687.  Gene #802: 'ADAM22 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ADAM22 MUTATED 7 3 1
ADAM22 WILD-TYPE 175 130 71
'ADAM22 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.135 (Fisher's exact test), Q value = 0.41

Table S8688.  Gene #802: 'ADAM22 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ADAM22 MUTATED 0 3 4 4
ADAM22 WILD-TYPE 112 93 88 182
'ADAM22 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0356 (Fisher's exact test), Q value = 0.2

Table S8689.  Gene #802: 'ADAM22 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ADAM22 MUTATED 2 0 4 2 0 1 2
ADAM22 WILD-TYPE 58 50 45 38 63 124 97

Figure S2431.  Get High-res Image Gene #802: 'ADAM22 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ADAM22 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.759 (Fisher's exact test), Q value = 1

Table S8690.  Gene #802: 'ADAM22 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ADAM22 MUTATED 4 2 1 3
ADAM22 WILD-TYPE 126 76 67 193
'ADAM22 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.484 (Fisher's exact test), Q value = 0.81

Table S8691.  Gene #802: 'ADAM22 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ADAM22 MUTATED 0 3 0 1 3 0 2 0 1
ADAM22 WILD-TYPE 40 59 28 79 66 48 41 28 73
'ADAM22 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0698 (Fisher's exact test), Q value = 0.28

Table S8692.  Gene #802: 'ADAM22 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
ADAM22 MUTATED 1 1 1 4
ADAM22 WILD-TYPE 32 30 26 15
'ADAM22 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.55 (Fisher's exact test), Q value = 0.87

Table S8693.  Gene #802: 'ADAM22 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
ADAM22 MUTATED 5 0 2 0
ADAM22 WILD-TYPE 49 10 22 22
'DDB1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0729 (Fisher's exact test), Q value = 0.29

Table S8694.  Gene #803: 'DDB1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
DDB1 MUTATED 2 0 0 2
DDB1 WILD-TYPE 44 58 64 41
'DDB1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0406 (Fisher's exact test), Q value = 0.21

Table S8695.  Gene #803: 'DDB1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
DDB1 MUTATED 3 0 1
DDB1 WILD-TYPE 48 83 76

Figure S2432.  Get High-res Image Gene #803: 'DDB1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'DDB1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0117 (Fisher's exact test), Q value = 0.11

Table S8696.  Gene #803: 'DDB1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
DDB1 MUTATED 12 2 1 0
DDB1 WILD-TYPE 166 181 100 20

Figure S2433.  Get High-res Image Gene #803: 'DDB1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'DDB1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.248 (Fisher's exact test), Q value = 0.57

Table S8697.  Gene #803: 'DDB1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
DDB1 MUTATED 2 2 7
DDB1 WILD-TYPE 85 78 93
'DDB1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.182 (Fisher's exact test), Q value = 0.48

Table S8698.  Gene #803: 'DDB1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
DDB1 MUTATED 0 6 5
DDB1 WILD-TYPE 89 154 133
'DDB1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.781 (Fisher's exact test), Q value = 1

Table S8699.  Gene #803: 'DDB1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
DDB1 MUTATED 5 5 1
DDB1 WILD-TYPE 177 128 71
'DDB1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.569 (Fisher's exact test), Q value = 0.88

Table S8700.  Gene #803: 'DDB1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
DDB1 MUTATED 3 5 3 4
DDB1 WILD-TYPE 109 91 89 182
'DDB1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0155 (Fisher's exact test), Q value = 0.12

Table S8701.  Gene #803: 'DDB1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
DDB1 MUTATED 3 3 4 0 1 0 4
DDB1 WILD-TYPE 57 47 45 40 62 125 95

Figure S2434.  Get High-res Image Gene #803: 'DDB1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'DDB1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.288 (Fisher's exact test), Q value = 0.62

Table S8702.  Gene #803: 'DDB1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
DDB1 MUTATED 6 3 0 5
DDB1 WILD-TYPE 124 75 68 191
'DDB1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.137 (Fisher's exact test), Q value = 0.41

Table S8703.  Gene #803: 'DDB1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
DDB1 MUTATED 1 1 0 5 5 1 0 1 0
DDB1 WILD-TYPE 39 61 28 75 64 47 43 27 74
'GLI2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.546 (Fisher's exact test), Q value = 0.86

Table S8704.  Gene #804: 'GLI2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
GLI2 MUTATED 11 8 5 2
GLI2 WILD-TYPE 167 175 96 18
'GLI2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.219 (Fisher's exact test), Q value = 0.53

Table S8705.  Gene #804: 'GLI2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
GLI2 MUTATED 11 5 6
GLI2 WILD-TYPE 76 75 94
'GLI2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.39 (Fisher's exact test), Q value = 0.72

Table S8706.  Gene #804: 'GLI2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
GLI2 MUTATED 6 7 11
GLI2 WILD-TYPE 83 153 127
'GLI2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.728 (Fisher's exact test), Q value = 0.99

Table S8707.  Gene #804: 'GLI2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
GLI2 MUTATED 13 8 3
GLI2 WILD-TYPE 169 125 69
'GLI2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0025 (Fisher's exact test), Q value = 0.043

Table S8708.  Gene #804: 'GLI2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
GLI2 MUTATED 5 7 11 3
GLI2 WILD-TYPE 107 89 81 183

Figure S2435.  Get High-res Image Gene #804: 'GLI2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'GLI2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 6e-05 (Fisher's exact test), Q value = 0.0037

Table S8709.  Gene #804: 'GLI2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
GLI2 MUTATED 3 1 9 5 5 1 2
GLI2 WILD-TYPE 57 49 40 35 58 124 97

Figure S2436.  Get High-res Image Gene #804: 'GLI2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'GLI2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00683 (Fisher's exact test), Q value = 0.076

Table S8710.  Gene #804: 'GLI2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
GLI2 MUTATED 14 5 3 4
GLI2 WILD-TYPE 116 73 65 192

Figure S2437.  Get High-res Image Gene #804: 'GLI2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'GLI2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00645 (Fisher's exact test), Q value = 0.074

Table S8711.  Gene #804: 'GLI2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
GLI2 MUTATED 6 6 2 3 4 0 4 1 0
GLI2 WILD-TYPE 34 56 26 77 65 48 39 27 74

Figure S2438.  Get High-res Image Gene #804: 'GLI2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'GLI2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0377 (Fisher's exact test), Q value = 0.2

Table S8712.  Gene #804: 'GLI2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
GLI2 MUTATED 3 1 0 4
GLI2 WILD-TYPE 30 30 27 15

Figure S2439.  Get High-res Image Gene #804: 'GLI2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'GLI2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.772 (Fisher's exact test), Q value = 1

Table S8713.  Gene #804: 'GLI2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
GLI2 MUTATED 5 1 1 1
GLI2 WILD-TYPE 49 9 23 21
'ADAM30 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.255 (Fisher's exact test), Q value = 0.58

Table S8714.  Gene #805: 'ADAM30 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ADAM30 MUTATED 2 0 1 2
ADAM30 WILD-TYPE 44 58 63 41
'ADAM30 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0462 (Fisher's exact test), Q value = 0.23

Table S8715.  Gene #805: 'ADAM30 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ADAM30 MUTATED 3 0 2
ADAM30 WILD-TYPE 48 83 75

Figure S2440.  Get High-res Image Gene #805: 'ADAM30 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'ADAM30 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00727 (Fisher's exact test), Q value = 0.079

Table S8716.  Gene #805: 'ADAM30 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ADAM30 MUTATED 11 2 0 0
ADAM30 WILD-TYPE 167 181 101 20

Figure S2441.  Get High-res Image Gene #805: 'ADAM30 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ADAM30 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.197 (Fisher's exact test), Q value = 0.5

Table S8717.  Gene #805: 'ADAM30 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ADAM30 MUTATED 5 2 1
ADAM30 WILD-TYPE 82 78 99
'ADAM30 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0924 (Fisher's exact test), Q value = 0.33

Table S8718.  Gene #805: 'ADAM30 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ADAM30 MUTATED 1 2 7
ADAM30 WILD-TYPE 88 158 131
'ADAM30 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.439 (Fisher's exact test), Q value = 0.77

Table S8719.  Gene #805: 'ADAM30 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ADAM30 MUTATED 7 2 1
ADAM30 WILD-TYPE 175 131 71
'ADAM30 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.33 (Fisher's exact test), Q value = 0.66

Table S8720.  Gene #805: 'ADAM30 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ADAM30 MUTATED 1 4 4 4
ADAM30 WILD-TYPE 111 92 88 182
'ADAM30 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0138 (Fisher's exact test), Q value = 0.12

Table S8721.  Gene #805: 'ADAM30 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ADAM30 MUTATED 1 1 5 1 1 0 4
ADAM30 WILD-TYPE 59 49 44 39 62 125 95

Figure S2442.  Get High-res Image Gene #805: 'ADAM30 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ADAM30 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.954 (Fisher's exact test), Q value = 1

Table S8722.  Gene #805: 'ADAM30 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ADAM30 MUTATED 4 2 1 6
ADAM30 WILD-TYPE 126 76 67 190
'ADAM30 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0931 (Fisher's exact test), Q value = 0.33

Table S8723.  Gene #805: 'ADAM30 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ADAM30 MUTATED 0 4 0 0 5 1 1 1 1
ADAM30 WILD-TYPE 40 58 28 80 64 47 42 27 73
'ADAM30 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S8724.  Gene #805: 'ADAM30 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
ADAM30 MUTATED 2 1 1 1
ADAM30 WILD-TYPE 31 30 26 18
'ADAM30 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.894 (Fisher's exact test), Q value = 1

Table S8725.  Gene #805: 'ADAM30 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
ADAM30 MUTATED 2 0 2 1
ADAM30 WILD-TYPE 52 10 22 21
'RGS22 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0151 (Fisher's exact test), Q value = 0.12

Table S8726.  Gene #806: 'RGS22 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
RGS22 MUTATED 1 0 0 3
RGS22 WILD-TYPE 45 58 64 40

Figure S2443.  Get High-res Image Gene #806: 'RGS22 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'RGS22 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S8727.  Gene #806: 'RGS22 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
RGS22 MUTATED 1 2 1
RGS22 WILD-TYPE 50 81 76
'RGS22 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00147 (Fisher's exact test), Q value = 0.031

Table S8728.  Gene #806: 'RGS22 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
RGS22 MUTATED 20 4 3 0
RGS22 WILD-TYPE 158 179 98 20

Figure S2444.  Get High-res Image Gene #806: 'RGS22 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'RGS22 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00047 (Fisher's exact test), Q value = 0.015

Table S8729.  Gene #806: 'RGS22 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
RGS22 MUTATED 13 0 10
RGS22 WILD-TYPE 74 80 90

Figure S2445.  Get High-res Image Gene #806: 'RGS22 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'RGS22 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.192 (Fisher's exact test), Q value = 0.49

Table S8730.  Gene #806: 'RGS22 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
RGS22 MUTATED 2 10 11
RGS22 WILD-TYPE 87 150 127
'RGS22 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.92 (Fisher's exact test), Q value = 1

Table S8731.  Gene #806: 'RGS22 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
RGS22 MUTATED 10 9 4
RGS22 WILD-TYPE 172 124 68
'RGS22 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00023 (Fisher's exact test), Q value = 0.0091

Table S8732.  Gene #806: 'RGS22 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
RGS22 MUTATED 1 11 10 5
RGS22 WILD-TYPE 111 85 82 181

Figure S2446.  Get High-res Image Gene #806: 'RGS22 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'RGS22 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S8733.  Gene #806: 'RGS22 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
RGS22 MUTATED 4 3 12 2 2 1 3
RGS22 WILD-TYPE 56 47 37 38 61 124 96

Figure S2447.  Get High-res Image Gene #806: 'RGS22 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'RGS22 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00048 (Fisher's exact test), Q value = 0.015

Table S8734.  Gene #806: 'RGS22 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
RGS22 MUTATED 15 6 0 5
RGS22 WILD-TYPE 115 72 68 191

Figure S2448.  Get High-res Image Gene #806: 'RGS22 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'RGS22 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.312 (Fisher's exact test), Q value = 0.64

Table S8735.  Gene #806: 'RGS22 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
RGS22 MUTATED 3 7 2 2 5 1 3 0 3
RGS22 WILD-TYPE 37 55 26 78 64 47 40 28 71
'RGS22 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 9e-05 (Fisher's exact test), Q value = 0.0048

Table S8736.  Gene #806: 'RGS22 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
RGS22 MUTATED 0 1 0 6
RGS22 WILD-TYPE 33 30 27 13

Figure S2449.  Get High-res Image Gene #806: 'RGS22 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'RGS22 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.378 (Fisher's exact test), Q value = 0.71

Table S8737.  Gene #806: 'RGS22 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
RGS22 MUTATED 4 0 3 0
RGS22 WILD-TYPE 50 10 21 22
'PPP1R3A MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00271 (Fisher's exact test), Q value = 0.046

Table S8738.  Gene #807: 'PPP1R3A MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
PPP1R3A MUTATED 3 0 2 7
PPP1R3A WILD-TYPE 43 58 62 36

Figure S2450.  Get High-res Image Gene #807: 'PPP1R3A MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'PPP1R3A MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.357 (Fisher's exact test), Q value = 0.69

Table S8739.  Gene #807: 'PPP1R3A MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
PPP1R3A MUTATED 5 3 4
PPP1R3A WILD-TYPE 46 80 73
'PPP1R3A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.136 (Fisher's exact test), Q value = 0.41

Table S8740.  Gene #807: 'PPP1R3A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
PPP1R3A MUTATED 20 10 8 0
PPP1R3A WILD-TYPE 158 173 93 20
'PPP1R3A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S8741.  Gene #807: 'PPP1R3A MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
PPP1R3A MUTATED 8 8 10
PPP1R3A WILD-TYPE 79 72 90
'PPP1R3A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.529 (Fisher's exact test), Q value = 0.85

Table S8742.  Gene #807: 'PPP1R3A MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
PPP1R3A MUTATED 5 15 9
PPP1R3A WILD-TYPE 84 145 129
'PPP1R3A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.581 (Fisher's exact test), Q value = 0.89

Table S8743.  Gene #807: 'PPP1R3A MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
PPP1R3A MUTATED 11 12 6
PPP1R3A WILD-TYPE 171 121 66
'PPP1R3A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.713 (Fisher's exact test), Q value = 0.98

Table S8744.  Gene #807: 'PPP1R3A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
PPP1R3A MUTATED 11 8 6 12
PPP1R3A WILD-TYPE 101 88 86 174
'PPP1R3A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.012 (Fisher's exact test), Q value = 0.11

Table S8745.  Gene #807: 'PPP1R3A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
PPP1R3A MUTATED 8 5 8 3 2 3 8
PPP1R3A WILD-TYPE 52 45 41 37 61 122 91

Figure S2451.  Get High-res Image Gene #807: 'PPP1R3A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'PPP1R3A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.263 (Fisher's exact test), Q value = 0.59

Table S8746.  Gene #807: 'PPP1R3A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
PPP1R3A MUTATED 14 6 2 14
PPP1R3A WILD-TYPE 116 72 66 182
'PPP1R3A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.49 (Fisher's exact test), Q value = 0.82

Table S8747.  Gene #807: 'PPP1R3A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
PPP1R3A MUTATED 3 4 5 8 4 2 5 1 4
PPP1R3A WILD-TYPE 37 58 23 72 65 46 38 27 70
'PPP1R3A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.079 (Fisher's exact test), Q value = 0.3

Table S8748.  Gene #807: 'PPP1R3A MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
PPP1R3A MUTATED 3 0 0 2
PPP1R3A WILD-TYPE 30 31 27 17
'PPP1R3A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S8749.  Gene #807: 'PPP1R3A MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
PPP1R3A MUTATED 3 0 1 1
PPP1R3A WILD-TYPE 51 10 23 21
'CCR2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.281 (Fisher's exact test), Q value = 0.61

Table S8750.  Gene #808: 'CCR2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
CCR2 MUTATED 5 2 0 0
CCR2 WILD-TYPE 173 181 101 20
'CCR2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S8751.  Gene #808: 'CCR2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
CCR2 MUTATED 2 2 3
CCR2 WILD-TYPE 85 78 97
'CCR2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.238 (Fisher's exact test), Q value = 0.56

Table S8752.  Gene #808: 'CCR2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
CCR2 MUTATED 0 2 4
CCR2 WILD-TYPE 89 158 134
'CCR2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.663 (Fisher's exact test), Q value = 0.95

Table S8753.  Gene #808: 'CCR2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
CCR2 MUTATED 4 2 0
CCR2 WILD-TYPE 178 131 72
'CCR2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.018 (Fisher's exact test), Q value = 0.13

Table S8754.  Gene #808: 'CCR2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
CCR2 MUTATED 2 1 4 0
CCR2 WILD-TYPE 110 95 88 186

Figure S2452.  Get High-res Image Gene #808: 'CCR2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'CCR2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0178 (Fisher's exact test), Q value = 0.13

Table S8755.  Gene #808: 'CCR2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
CCR2 MUTATED 1 0 2 2 2 0 0
CCR2 WILD-TYPE 59 50 47 38 61 125 99

Figure S2453.  Get High-res Image Gene #808: 'CCR2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CCR2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0109 (Fisher's exact test), Q value = 0.1

Table S8756.  Gene #808: 'CCR2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
CCR2 MUTATED 5 2 0 0
CCR2 WILD-TYPE 125 76 68 196

Figure S2454.  Get High-res Image Gene #808: 'CCR2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'CCR2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.571 (Fisher's exact test), Q value = 0.88

Table S8757.  Gene #808: 'CCR2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
CCR2 MUTATED 1 2 0 3 1 0 0 0 0
CCR2 WILD-TYPE 39 60 28 77 68 48 43 28 74
'OR4D2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.537 (Fisher's exact test), Q value = 0.86

Table S8758.  Gene #809: 'OR4D2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
OR4D2 MUTATED 3 1 0 0
OR4D2 WILD-TYPE 175 182 101 20
'OR4D2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.391 (Fisher's exact test), Q value = 0.72

Table S8759.  Gene #809: 'OR4D2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
OR4D2 MUTATED 1 0 3
OR4D2 WILD-TYPE 86 80 97
'OR4D2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.358 (Fisher's exact test), Q value = 0.69

Table S8760.  Gene #809: 'OR4D2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
OR4D2 MUTATED 0 1 3
OR4D2 WILD-TYPE 89 159 135
'OR4D2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.183 (Fisher's exact test), Q value = 0.48

Table S8761.  Gene #809: 'OR4D2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
OR4D2 MUTATED 4 0 0
OR4D2 WILD-TYPE 178 133 72
'OR4D2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0378 (Fisher's exact test), Q value = 0.2

Table S8762.  Gene #809: 'OR4D2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
OR4D2 MUTATED 0 2 2 0
OR4D2 WILD-TYPE 112 94 90 186

Figure S2455.  Get High-res Image Gene #809: 'OR4D2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'OR4D2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00281 (Fisher's exact test), Q value = 0.047

Table S8763.  Gene #809: 'OR4D2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
OR4D2 MUTATED 0 1 3 0 0 0 0
OR4D2 WILD-TYPE 60 49 46 40 63 125 99

Figure S2456.  Get High-res Image Gene #809: 'OR4D2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'OR4D2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S8764.  Gene #809: 'OR4D2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
OR4D2 MUTATED 1 1 0 2
OR4D2 WILD-TYPE 129 77 68 194
'OR4D2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.848 (Fisher's exact test), Q value = 1

Table S8765.  Gene #809: 'OR4D2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
OR4D2 MUTATED 0 1 0 1 2 0 0 0 0
OR4D2 WILD-TYPE 40 61 28 79 67 48 43 28 74
'OR4M2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00363 (Fisher's exact test), Q value = 0.055

Table S8766.  Gene #810: 'OR4M2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
OR4M2 MUTATED 1 0 0 4
OR4M2 WILD-TYPE 45 58 64 39

Figure S2457.  Get High-res Image Gene #810: 'OR4M2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'OR4M2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.638 (Fisher's exact test), Q value = 0.93

Table S8767.  Gene #810: 'OR4M2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
OR4M2 MUTATED 2 1 2
OR4M2 WILD-TYPE 49 82 75
'OR4M2 MUTATION STATUS' versus 'CN_CNMF'

P value = 2e-05 (Fisher's exact test), Q value = 0.0017

Table S8768.  Gene #810: 'OR4M2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
OR4M2 MUTATED 16 0 0 0
OR4M2 WILD-TYPE 162 183 101 20

Figure S2458.  Get High-res Image Gene #810: 'OR4M2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'OR4M2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0464 (Fisher's exact test), Q value = 0.23

Table S8769.  Gene #810: 'OR4M2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
OR4M2 MUTATED 5 0 6
OR4M2 WILD-TYPE 82 80 94

Figure S2459.  Get High-res Image Gene #810: 'OR4M2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'OR4M2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.738 (Fisher's exact test), Q value = 1

Table S8770.  Gene #810: 'OR4M2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
OR4M2 MUTATED 2 6 6
OR4M2 WILD-TYPE 87 154 132
'OR4M2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.822 (Fisher's exact test), Q value = 1

Table S8771.  Gene #810: 'OR4M2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
OR4M2 MUTATED 6 6 2
OR4M2 WILD-TYPE 176 127 70
'OR4M2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0217 (Fisher's exact test), Q value = 0.15

Table S8772.  Gene #810: 'OR4M2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
OR4M2 MUTATED 0 5 6 5
OR4M2 WILD-TYPE 112 91 86 181

Figure S2460.  Get High-res Image Gene #810: 'OR4M2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'OR4M2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 2e-05 (Fisher's exact test), Q value = 0.0017

Table S8773.  Gene #810: 'OR4M2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
OR4M2 MUTATED 1 1 9 0 1 0 4
OR4M2 WILD-TYPE 59 49 40 40 62 125 95

Figure S2461.  Get High-res Image Gene #810: 'OR4M2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'OR4M2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.383 (Fisher's exact test), Q value = 0.71

Table S8774.  Gene #810: 'OR4M2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
OR4M2 MUTATED 5 3 0 8
OR4M2 WILD-TYPE 125 75 68 188
'OR4M2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00236 (Fisher's exact test), Q value = 0.042

Table S8775.  Gene #810: 'OR4M2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
OR4M2 MUTATED 1 5 2 1 7 0 0 0 0
OR4M2 WILD-TYPE 39 57 26 79 62 48 43 28 74

Figure S2462.  Get High-res Image Gene #810: 'OR4M2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'OR4M2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00395 (Fisher's exact test), Q value = 0.057

Table S8776.  Gene #810: 'OR4M2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
OR4M2 MUTATED 0 0 0 3
OR4M2 WILD-TYPE 33 31 27 16

Figure S2463.  Get High-res Image Gene #810: 'OR4M2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'OR4M2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.448 (Fisher's exact test), Q value = 0.77

Table S8777.  Gene #810: 'OR4M2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
OR4M2 MUTATED 1 0 2 0
OR4M2 WILD-TYPE 53 10 22 22
'EYS MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00148 (Fisher's exact test), Q value = 0.031

Table S8778.  Gene #811: 'EYS MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
EYS MUTATED 5 0 1 6
EYS WILD-TYPE 41 58 63 37

Figure S2464.  Get High-res Image Gene #811: 'EYS MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'EYS MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 3e-05 (Fisher's exact test), Q value = 0.0022

Table S8779.  Gene #811: 'EYS MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
EYS MUTATED 9 0 3
EYS WILD-TYPE 42 83 74

Figure S2465.  Get High-res Image Gene #811: 'EYS MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'EYS MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00058 (Fisher's exact test), Q value = 0.017

Table S8780.  Gene #811: 'EYS MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
EYS MUTATED 27 9 3 0
EYS WILD-TYPE 151 174 98 20

Figure S2466.  Get High-res Image Gene #811: 'EYS MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'EYS MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.227 (Fisher's exact test), Q value = 0.54

Table S8781.  Gene #811: 'EYS MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
EYS MUTATED 11 5 14
EYS WILD-TYPE 76 75 86
'EYS MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.765 (Fisher's exact test), Q value = 1

Table S8782.  Gene #811: 'EYS MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
EYS MUTATED 6 16 13
EYS WILD-TYPE 83 144 125
'EYS MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.672 (Fisher's exact test), Q value = 0.95

Table S8783.  Gene #811: 'EYS MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
EYS MUTATED 19 10 6
EYS WILD-TYPE 163 123 66
'EYS MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.114 (Fisher's exact test), Q value = 0.37

Table S8784.  Gene #811: 'EYS MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
EYS MUTATED 7 11 12 11
EYS WILD-TYPE 105 85 80 175
'EYS MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S8785.  Gene #811: 'EYS MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
EYS MUTATED 5 5 13 2 5 1 10
EYS WILD-TYPE 55 45 36 38 58 124 89

Figure S2467.  Get High-res Image Gene #811: 'EYS MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'EYS MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.268 (Fisher's exact test), Q value = 0.59

Table S8786.  Gene #811: 'EYS MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
EYS MUTATED 15 8 4 12
EYS WILD-TYPE 115 70 64 184
'EYS MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00683 (Fisher's exact test), Q value = 0.076

Table S8787.  Gene #811: 'EYS MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
EYS MUTATED 3 6 1 4 12 3 8 1 1
EYS WILD-TYPE 37 56 27 76 57 45 35 27 73

Figure S2468.  Get High-res Image Gene #811: 'EYS MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'EYS MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00025 (Fisher's exact test), Q value = 0.0096

Table S8788.  Gene #811: 'EYS MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
EYS MUTATED 7 0 0 5
EYS WILD-TYPE 26 31 27 14

Figure S2469.  Get High-res Image Gene #811: 'EYS MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'EYS MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.405 (Fisher's exact test), Q value = 0.73

Table S8789.  Gene #811: 'EYS MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
EYS MUTATED 8 0 1 3
EYS WILD-TYPE 46 10 23 19
'ARNT2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0266 (Fisher's exact test), Q value = 0.17

Table S8790.  Gene #812: 'ARNT2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ARNT2 MUTATED 3 0 0 2
ARNT2 WILD-TYPE 43 58 64 41

Figure S2470.  Get High-res Image Gene #812: 'ARNT2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'ARNT2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.255 (Fisher's exact test), Q value = 0.58

Table S8791.  Gene #812: 'ARNT2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ARNT2 MUTATED 3 1 1
ARNT2 WILD-TYPE 48 82 76
'ARNT2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0869 (Fisher's exact test), Q value = 0.32

Table S8792.  Gene #812: 'ARNT2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ARNT2 MUTATED 9 2 2 1
ARNT2 WILD-TYPE 169 181 99 19
'ARNT2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.915 (Fisher's exact test), Q value = 1

Table S8793.  Gene #812: 'ARNT2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ARNT2 MUTATED 3 2 4
ARNT2 WILD-TYPE 84 78 96
'ARNT2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.244 (Fisher's exact test), Q value = 0.57

Table S8794.  Gene #812: 'ARNT2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ARNT2 MUTATED 1 4 7
ARNT2 WILD-TYPE 88 156 131
'ARNT2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.366 (Fisher's exact test), Q value = 0.69

Table S8795.  Gene #812: 'ARNT2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ARNT2 MUTATED 8 2 2
ARNT2 WILD-TYPE 174 131 70
'ARNT2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.742 (Fisher's exact test), Q value = 1

Table S8796.  Gene #812: 'ARNT2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ARNT2 MUTATED 2 3 4 5
ARNT2 WILD-TYPE 110 93 88 181
'ARNT2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0758 (Fisher's exact test), Q value = 0.3

Table S8797.  Gene #812: 'ARNT2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ARNT2 MUTATED 2 1 5 0 2 1 3
ARNT2 WILD-TYPE 58 49 44 40 61 124 96
'ARNT2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.586 (Fisher's exact test), Q value = 0.89

Table S8798.  Gene #812: 'ARNT2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ARNT2 MUTATED 3 4 1 5
ARNT2 WILD-TYPE 127 74 67 191
'ARNT2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0203 (Fisher's exact test), Q value = 0.14

Table S8799.  Gene #812: 'ARNT2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ARNT2 MUTATED 0 4 1 1 6 0 1 0 0
ARNT2 WILD-TYPE 40 58 27 79 63 48 42 28 74

Figure S2471.  Get High-res Image Gene #812: 'ARNT2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'ARNT2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S8800.  Gene #812: 'ARNT2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
ARNT2 MUTATED 1 1 1 1
ARNT2 WILD-TYPE 32 30 26 18
'ARNT2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.375 (Fisher's exact test), Q value = 0.7

Table S8801.  Gene #812: 'ARNT2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
ARNT2 MUTATED 2 1 0 1
ARNT2 WILD-TYPE 52 9 24 21
'NIPBL MUTATION STATUS' versus 'MRNA_CNMF'

P value = 1e-04 (Fisher's exact test), Q value = 0.0052

Table S8802.  Gene #813: 'NIPBL MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
NIPBL MUTATED 9 0 1 3
NIPBL WILD-TYPE 37 58 63 40

Figure S2472.  Get High-res Image Gene #813: 'NIPBL MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'NIPBL MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00803 (Fisher's exact test), Q value = 0.084

Table S8803.  Gene #813: 'NIPBL MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
NIPBL MUTATED 8 2 3
NIPBL WILD-TYPE 43 81 74

Figure S2473.  Get High-res Image Gene #813: 'NIPBL MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'NIPBL MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S8804.  Gene #813: 'NIPBL MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
NIPBL MUTATED 28 6 0 3
NIPBL WILD-TYPE 150 177 101 17

Figure S2474.  Get High-res Image Gene #813: 'NIPBL MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'NIPBL MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.012 (Fisher's exact test), Q value = 0.11

Table S8805.  Gene #813: 'NIPBL MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
NIPBL MUTATED 14 3 6
NIPBL WILD-TYPE 73 77 94

Figure S2475.  Get High-res Image Gene #813: 'NIPBL MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'NIPBL MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0581 (Fisher's exact test), Q value = 0.26

Table S8806.  Gene #813: 'NIPBL MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
NIPBL MUTATED 3 12 17
NIPBL WILD-TYPE 86 148 121
'NIPBL MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S8807.  Gene #813: 'NIPBL MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
NIPBL MUTATED 15 11 6
NIPBL WILD-TYPE 167 122 66
'NIPBL MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.419 (Fisher's exact test), Q value = 0.75

Table S8808.  Gene #813: 'NIPBL MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
NIPBL MUTATED 5 9 9 14
NIPBL WILD-TYPE 107 87 83 172
'NIPBL MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00138 (Fisher's exact test), Q value = 0.03

Table S8809.  Gene #813: 'NIPBL MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
NIPBL MUTATED 2 5 9 4 3 2 12
NIPBL WILD-TYPE 58 45 40 36 60 123 87

Figure S2476.  Get High-res Image Gene #813: 'NIPBL MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'NIPBL MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0258 (Fisher's exact test), Q value = 0.16

Table S8810.  Gene #813: 'NIPBL MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
NIPBL MUTATED 12 7 0 18
NIPBL WILD-TYPE 118 71 68 178

Figure S2477.  Get High-res Image Gene #813: 'NIPBL MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'NIPBL MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0912 (Fisher's exact test), Q value = 0.33

Table S8811.  Gene #813: 'NIPBL MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
NIPBL MUTATED 3 7 4 5 10 1 2 3 2
NIPBL WILD-TYPE 37 55 24 75 59 47 41 25 72
'NIPBL MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.135 (Fisher's exact test), Q value = 0.41

Table S8812.  Gene #813: 'NIPBL MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
NIPBL MUTATED 2 1 1 4
NIPBL WILD-TYPE 31 30 26 15
'NIPBL MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.383 (Fisher's exact test), Q value = 0.71

Table S8813.  Gene #813: 'NIPBL MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
NIPBL MUTATED 5 0 3 0
NIPBL WILD-TYPE 49 10 21 22
'G2E3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.405 (Fisher's exact test), Q value = 0.73

Table S8814.  Gene #814: 'G2E3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
G2E3 MUTATED 1 0 1 2
G2E3 WILD-TYPE 45 58 63 41
'G2E3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.177 (Fisher's exact test), Q value = 0.48

Table S8815.  Gene #814: 'G2E3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
G2E3 MUTATED 2 0 2
G2E3 WILD-TYPE 49 83 75
'G2E3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0118 (Fisher's exact test), Q value = 0.11

Table S8816.  Gene #814: 'G2E3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
G2E3 MUTATED 12 2 1 0
G2E3 WILD-TYPE 166 181 100 20

Figure S2478.  Get High-res Image Gene #814: 'G2E3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'G2E3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0868 (Fisher's exact test), Q value = 0.32

Table S8817.  Gene #814: 'G2E3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
G2E3 MUTATED 7 1 3
G2E3 WILD-TYPE 80 79 97
'G2E3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.321 (Fisher's exact test), Q value = 0.65

Table S8818.  Gene #814: 'G2E3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
G2E3 MUTATED 1 6 7
G2E3 WILD-TYPE 88 154 131
'G2E3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.715 (Fisher's exact test), Q value = 0.99

Table S8819.  Gene #814: 'G2E3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
G2E3 MUTATED 5 6 3
G2E3 WILD-TYPE 177 127 69
'G2E3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.304 (Fisher's exact test), Q value = 0.63

Table S8820.  Gene #814: 'G2E3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
G2E3 MUTATED 2 6 2 5
G2E3 WILD-TYPE 110 90 90 181
'G2E3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0872 (Fisher's exact test), Q value = 0.32

Table S8821.  Gene #814: 'G2E3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
G2E3 MUTATED 2 3 3 1 2 0 4
G2E3 WILD-TYPE 58 47 46 39 61 125 95
'G2E3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.743 (Fisher's exact test), Q value = 1

Table S8822.  Gene #814: 'G2E3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
G2E3 MUTATED 3 3 3 5
G2E3 WILD-TYPE 127 75 65 191
'G2E3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0592 (Fisher's exact test), Q value = 0.27

Table S8823.  Gene #814: 'G2E3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
G2E3 MUTATED 0 2 1 0 4 0 4 0 3
G2E3 WILD-TYPE 40 60 27 80 65 48 39 28 71
'NOS3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0257 (Fisher's exact test), Q value = 0.16

Table S8824.  Gene #815: 'NOS3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
NOS3 MUTATED 14 3 3 0
NOS3 WILD-TYPE 164 180 98 20

Figure S2479.  Get High-res Image Gene #815: 'NOS3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'NOS3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0349 (Fisher's exact test), Q value = 0.19

Table S8825.  Gene #815: 'NOS3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
NOS3 MUTATED 4 2 12
NOS3 WILD-TYPE 83 78 88

Figure S2480.  Get High-res Image Gene #815: 'NOS3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'NOS3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.648 (Fisher's exact test), Q value = 0.94

Table S8826.  Gene #815: 'NOS3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
NOS3 MUTATED 2 8 6
NOS3 WILD-TYPE 87 152 132
'NOS3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.1 (Fisher's exact test), Q value = 0.35

Table S8827.  Gene #815: 'NOS3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
NOS3 MUTATED 10 6 0
NOS3 WILD-TYPE 172 127 72
'NOS3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00173 (Fisher's exact test), Q value = 0.034

Table S8828.  Gene #815: 'NOS3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
NOS3 MUTATED 3 10 5 2
NOS3 WILD-TYPE 109 86 87 184

Figure S2481.  Get High-res Image Gene #815: 'NOS3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'NOS3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 2e-05 (Fisher's exact test), Q value = 0.0017

Table S8829.  Gene #815: 'NOS3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
NOS3 MUTATED 2 2 11 1 1 1 2
NOS3 WILD-TYPE 58 48 38 39 62 124 97

Figure S2482.  Get High-res Image Gene #815: 'NOS3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'NOS3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00233 (Fisher's exact test), Q value = 0.042

Table S8830.  Gene #815: 'NOS3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
NOS3 MUTATED 13 3 1 3
NOS3 WILD-TYPE 117 75 67 193

Figure S2483.  Get High-res Image Gene #815: 'NOS3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'NOS3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0253 (Fisher's exact test), Q value = 0.16

Table S8831.  Gene #815: 'NOS3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
NOS3 MUTATED 2 7 0 3 6 1 1 0 0
NOS3 WILD-TYPE 38 55 28 77 63 47 42 28 74

Figure S2484.  Get High-res Image Gene #815: 'NOS3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'NOS3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0259 (Fisher's exact test), Q value = 0.16

Table S8832.  Gene #815: 'NOS3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
NOS3 MUTATED 2 0 1 4
NOS3 WILD-TYPE 31 31 26 15

Figure S2485.  Get High-res Image Gene #815: 'NOS3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'NOS3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.381 (Fisher's exact test), Q value = 0.71

Table S8833.  Gene #815: 'NOS3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
NOS3 MUTATED 4 0 3 0
NOS3 WILD-TYPE 50 10 21 22
'EFEMP1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.273 (Fisher's exact test), Q value = 0.6

Table S8834.  Gene #816: 'EFEMP1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
EFEMP1 MUTATED 2 0 1 0
EFEMP1 WILD-TYPE 44 58 63 43
'EFEMP1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.184 (Fisher's exact test), Q value = 0.48

Table S8835.  Gene #816: 'EFEMP1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
EFEMP1 MUTATED 2 0 1
EFEMP1 WILD-TYPE 49 83 76
'EFEMP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.72 (Fisher's exact test), Q value = 0.99

Table S8836.  Gene #816: 'EFEMP1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
EFEMP1 MUTATED 9 6 5 0
EFEMP1 WILD-TYPE 169 177 96 20
'EFEMP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.108 (Fisher's exact test), Q value = 0.36

Table S8837.  Gene #816: 'EFEMP1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
EFEMP1 MUTATED 9 2 6
EFEMP1 WILD-TYPE 78 78 94
'EFEMP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00126 (Fisher's exact test), Q value = 0.029

Table S8838.  Gene #816: 'EFEMP1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
EFEMP1 MUTATED 0 6 14
EFEMP1 WILD-TYPE 89 154 124

Figure S2486.  Get High-res Image Gene #816: 'EFEMP1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'EFEMP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.191 (Fisher's exact test), Q value = 0.49

Table S8839.  Gene #816: 'EFEMP1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
EFEMP1 MUTATED 13 6 1
EFEMP1 WILD-TYPE 169 127 71
'EFEMP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0378 (Fisher's exact test), Q value = 0.2

Table S8840.  Gene #816: 'EFEMP1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
EFEMP1 MUTATED 4 3 9 4
EFEMP1 WILD-TYPE 108 93 83 182

Figure S2487.  Get High-res Image Gene #816: 'EFEMP1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'EFEMP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0218 (Fisher's exact test), Q value = 0.15

Table S8841.  Gene #816: 'EFEMP1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
EFEMP1 MUTATED 5 4 5 0 2 2 2
EFEMP1 WILD-TYPE 55 46 44 40 61 123 97

Figure S2488.  Get High-res Image Gene #816: 'EFEMP1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'EFEMP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.104 (Fisher's exact test), Q value = 0.36

Table S8842.  Gene #816: 'EFEMP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
EFEMP1 MUTATED 9 5 2 4
EFEMP1 WILD-TYPE 121 73 66 192
'EFEMP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.348 (Fisher's exact test), Q value = 0.68

Table S8843.  Gene #816: 'EFEMP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
EFEMP1 MUTATED 3 5 1 5 2 0 2 1 1
EFEMP1 WILD-TYPE 37 57 27 75 67 48 41 27 73
'EFEMP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.411 (Fisher's exact test), Q value = 0.74

Table S8844.  Gene #816: 'EFEMP1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
EFEMP1 MUTATED 1 2 2 3
EFEMP1 WILD-TYPE 32 29 25 16
'EFEMP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.656 (Fisher's exact test), Q value = 0.94

Table S8845.  Gene #816: 'EFEMP1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
EFEMP1 MUTATED 6 0 1 1
EFEMP1 WILD-TYPE 48 10 23 21
'SPANXN2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0178 (Fisher's exact test), Q value = 0.13

Table S8846.  Gene #817: 'SPANXN2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
SPANXN2 MUTATED 3 0 0 0
SPANXN2 WILD-TYPE 43 58 64 43

Figure S2489.  Get High-res Image Gene #817: 'SPANXN2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'SPANXN2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0131 (Fisher's exact test), Q value = 0.11

Table S8847.  Gene #817: 'SPANXN2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
SPANXN2 MUTATED 3 0 0
SPANXN2 WILD-TYPE 48 83 77

Figure S2490.  Get High-res Image Gene #817: 'SPANXN2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'SPANXN2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.328 (Fisher's exact test), Q value = 0.66

Table S8848.  Gene #817: 'SPANXN2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
SPANXN2 MUTATED 5 1 1 0
SPANXN2 WILD-TYPE 173 182 100 20
'SPANXN2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.528 (Fisher's exact test), Q value = 0.85

Table S8849.  Gene #817: 'SPANXN2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
SPANXN2 MUTATED 3 1 1
SPANXN2 WILD-TYPE 84 79 99
'SPANXN2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.143 (Fisher's exact test), Q value = 0.42

Table S8850.  Gene #817: 'SPANXN2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
SPANXN2 MUTATED 0 2 5
SPANXN2 WILD-TYPE 89 158 133
'SPANXN2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S8851.  Gene #817: 'SPANXN2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
SPANXN2 MUTATED 4 2 1
SPANXN2 WILD-TYPE 178 131 71
'SPANXN2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.671 (Fisher's exact test), Q value = 0.95

Table S8852.  Gene #817: 'SPANXN2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
SPANXN2 MUTATED 1 3 1 3
SPANXN2 WILD-TYPE 111 93 91 183
'SPANXN2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0947 (Fisher's exact test), Q value = 0.34

Table S8853.  Gene #817: 'SPANXN2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
SPANXN2 MUTATED 1 2 2 0 0 0 3
SPANXN2 WILD-TYPE 59 48 47 40 63 125 96
'SPANXN2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.844 (Fisher's exact test), Q value = 1

Table S8854.  Gene #817: 'SPANXN2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
SPANXN2 MUTATED 3 1 0 4
SPANXN2 WILD-TYPE 127 77 68 192
'SPANXN2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.518 (Fisher's exact test), Q value = 0.84

Table S8855.  Gene #817: 'SPANXN2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
SPANXN2 MUTATED 1 1 0 1 4 0 0 0 1
SPANXN2 WILD-TYPE 39 61 28 79 65 48 43 28 73
'RPS6KA3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00541 (Fisher's exact test), Q value = 0.066

Table S8856.  Gene #818: 'RPS6KA3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
RPS6KA3 MUTATED 2 0 0 4
RPS6KA3 WILD-TYPE 44 58 64 39

Figure S2491.  Get High-res Image Gene #818: 'RPS6KA3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'RPS6KA3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.244 (Fisher's exact test), Q value = 0.57

Table S8857.  Gene #818: 'RPS6KA3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
RPS6KA3 MUTATED 3 1 2
RPS6KA3 WILD-TYPE 48 82 75
'RPS6KA3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0121 (Fisher's exact test), Q value = 0.11

Table S8858.  Gene #818: 'RPS6KA3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
RPS6KA3 MUTATED 11 1 3 1
RPS6KA3 WILD-TYPE 167 182 98 19

Figure S2492.  Get High-res Image Gene #818: 'RPS6KA3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'RPS6KA3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.12 (Fisher's exact test), Q value = 0.39

Table S8859.  Gene #818: 'RPS6KA3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
RPS6KA3 MUTATED 2 1 7
RPS6KA3 WILD-TYPE 85 79 93
'RPS6KA3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.733 (Fisher's exact test), Q value = 1

Table S8860.  Gene #818: 'RPS6KA3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
RPS6KA3 MUTATED 2 6 3
RPS6KA3 WILD-TYPE 87 154 135
'RPS6KA3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.148 (Fisher's exact test), Q value = 0.43

Table S8861.  Gene #818: 'RPS6KA3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
RPS6KA3 MUTATED 3 7 1
RPS6KA3 WILD-TYPE 179 126 71
'RPS6KA3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0872 (Fisher's exact test), Q value = 0.32

Table S8862.  Gene #818: 'RPS6KA3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
RPS6KA3 MUTATED 1 7 2 6
RPS6KA3 WILD-TYPE 111 89 90 180
'RPS6KA3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0267 (Fisher's exact test), Q value = 0.17

Table S8863.  Gene #818: 'RPS6KA3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
RPS6KA3 MUTATED 2 2 4 1 1 0 6
RPS6KA3 WILD-TYPE 58 48 45 39 62 125 93

Figure S2493.  Get High-res Image Gene #818: 'RPS6KA3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'RPS6KA3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.837 (Fisher's exact test), Q value = 1

Table S8864.  Gene #818: 'RPS6KA3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
RPS6KA3 MUTATED 5 2 1 8
RPS6KA3 WILD-TYPE 125 76 67 188
'RPS6KA3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.167 (Fisher's exact test), Q value = 0.46

Table S8865.  Gene #818: 'RPS6KA3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
RPS6KA3 MUTATED 1 2 2 1 6 0 2 1 1
RPS6KA3 WILD-TYPE 39 60 26 79 63 48 41 27 73
'ICOSLG MUTATION STATUS' versus 'CN_CNMF'

P value = 0.387 (Fisher's exact test), Q value = 0.71

Table S8866.  Gene #819: 'ICOSLG MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ICOSLG MUTATED 4 1 0 0
ICOSLG WILD-TYPE 174 182 101 20
'ICOSLG MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.383 (Fisher's exact test), Q value = 0.71

Table S8867.  Gene #819: 'ICOSLG MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ICOSLG MUTATED 2 0 3
ICOSLG WILD-TYPE 85 80 97
'ICOSLG MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.373 (Fisher's exact test), Q value = 0.7

Table S8868.  Gene #819: 'ICOSLG MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ICOSLG MUTATED 0 2 3
ICOSLG WILD-TYPE 89 158 135
'ICOSLG MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S8869.  Gene #819: 'ICOSLG MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ICOSLG MUTATED 2 2 1
ICOSLG WILD-TYPE 180 131 71
'ICOSLG MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0189 (Fisher's exact test), Q value = 0.14

Table S8870.  Gene #819: 'ICOSLG MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ICOSLG MUTATED 0 3 2 0
ICOSLG WILD-TYPE 112 93 90 186

Figure S2494.  Get High-res Image Gene #819: 'ICOSLG MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'ICOSLG MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00457 (Fisher's exact test), Q value = 0.061

Table S8871.  Gene #819: 'ICOSLG MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ICOSLG MUTATED 0 1 3 1 0 0 0
ICOSLG WILD-TYPE 60 49 46 39 63 125 99

Figure S2495.  Get High-res Image Gene #819: 'ICOSLG MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ICOSLG MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.634 (Fisher's exact test), Q value = 0.93

Table S8872.  Gene #819: 'ICOSLG MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ICOSLG MUTATED 2 1 1 1
ICOSLG WILD-TYPE 128 77 67 195
'ICOSLG MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.732 (Fisher's exact test), Q value = 1

Table S8873.  Gene #819: 'ICOSLG MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ICOSLG MUTATED 0 2 0 0 1 0 1 0 1
ICOSLG WILD-TYPE 40 60 28 80 68 48 42 28 73
'ICOSLG MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.137 (Fisher's exact test), Q value = 0.41

Table S8874.  Gene #819: 'ICOSLG MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
ICOSLG MUTATED 1 0 0 2
ICOSLG WILD-TYPE 32 31 27 17
'ICOSLG MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S8875.  Gene #819: 'ICOSLG MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
ICOSLG MUTATED 2 0 1 0
ICOSLG WILD-TYPE 52 10 23 22
'PPIG MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.113 (Fisher's exact test), Q value = 0.37

Table S8876.  Gene #820: 'PPIG MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
PPIG MUTATED 2 0 1 3
PPIG WILD-TYPE 44 58 63 40
'PPIG MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0714 (Fisher's exact test), Q value = 0.29

Table S8877.  Gene #820: 'PPIG MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
PPIG MUTATED 4 1 1
PPIG WILD-TYPE 47 82 76
'PPIG MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0541 (Fisher's exact test), Q value = 0.25

Table S8878.  Gene #820: 'PPIG MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
PPIG MUTATED 11 3 1 0
PPIG WILD-TYPE 167 180 100 20
'PPIG MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.765 (Fisher's exact test), Q value = 1

Table S8879.  Gene #820: 'PPIG MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
PPIG MUTATED 4 2 3
PPIG WILD-TYPE 83 78 97
'PPIG MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.131 (Fisher's exact test), Q value = 0.4

Table S8880.  Gene #820: 'PPIG MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
PPIG MUTATED 0 7 5
PPIG WILD-TYPE 89 153 133
'PPIG MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.743 (Fisher's exact test), Q value = 1

Table S8881.  Gene #820: 'PPIG MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
PPIG MUTATED 6 5 1
PPIG WILD-TYPE 176 128 71
'PPIG MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.301 (Fisher's exact test), Q value = 0.63

Table S8882.  Gene #820: 'PPIG MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
PPIG MUTATED 2 6 2 5
PPIG WILD-TYPE 110 90 90 181
'PPIG MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00717 (Fisher's exact test), Q value = 0.078

Table S8883.  Gene #820: 'PPIG MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
PPIG MUTATED 2 1 4 2 0 0 6
PPIG WILD-TYPE 58 49 45 38 63 125 93

Figure S2496.  Get High-res Image Gene #820: 'PPIG MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'PPIG MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.664 (Fisher's exact test), Q value = 0.95

Table S8884.  Gene #820: 'PPIG MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
PPIG MUTATED 4 1 3 5
PPIG WILD-TYPE 126 77 65 191
'PPIG MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.122 (Fisher's exact test), Q value = 0.39

Table S8885.  Gene #820: 'PPIG MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
PPIG MUTATED 0 1 2 0 3 2 2 2 1
PPIG WILD-TYPE 40 61 26 80 66 46 41 26 73
'PPIG MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.271 (Fisher's exact test), Q value = 0.6

Table S8886.  Gene #820: 'PPIG MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
PPIG MUTATED 1 0 1 2
PPIG WILD-TYPE 32 31 26 17
'PPIG MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.486 (Fisher's exact test), Q value = 0.81

Table S8887.  Gene #820: 'PPIG MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
PPIG MUTATED 1 0 2 1
PPIG WILD-TYPE 53 10 22 21
'PTPRN MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.12 (Fisher's exact test), Q value = 0.39

Table S8888.  Gene #821: 'PTPRN MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
PTPRN MUTATED 1 1 0 3
PTPRN WILD-TYPE 45 57 64 40
'PTPRN MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.253 (Fisher's exact test), Q value = 0.58

Table S8889.  Gene #821: 'PTPRN MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
PTPRN MUTATED 3 1 1
PTPRN WILD-TYPE 48 82 76
'PTPRN MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00017 (Fisher's exact test), Q value = 0.0075

Table S8890.  Gene #821: 'PTPRN MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
PTPRN MUTATED 15 2 0 0
PTPRN WILD-TYPE 163 181 101 20

Figure S2497.  Get High-res Image Gene #821: 'PTPRN MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'PTPRN MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.195 (Fisher's exact test), Q value = 0.5

Table S8891.  Gene #821: 'PTPRN MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
PTPRN MUTATED 6 1 4
PTPRN WILD-TYPE 81 79 96
'PTPRN MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.181 (Fisher's exact test), Q value = 0.48

Table S8892.  Gene #821: 'PTPRN MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
PTPRN MUTATED 1 9 4
PTPRN WILD-TYPE 88 151 134
'PTPRN MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0281 (Fisher's exact test), Q value = 0.17

Table S8893.  Gene #821: 'PTPRN MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
PTPRN MUTATED 5 9 0
PTPRN WILD-TYPE 177 124 72

Figure S2498.  Get High-res Image Gene #821: 'PTPRN MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'PTPRN MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.261 (Fisher's exact test), Q value = 0.58

Table S8894.  Gene #821: 'PTPRN MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
PTPRN MUTATED 1 4 5 7
PTPRN WILD-TYPE 111 92 87 179
'PTPRN MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0362 (Fisher's exact test), Q value = 0.2

Table S8895.  Gene #821: 'PTPRN MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
PTPRN MUTATED 1 2 5 0 2 1 6
PTPRN WILD-TYPE 59 48 44 40 61 124 93

Figure S2499.  Get High-res Image Gene #821: 'PTPRN MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'PTPRN MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.984 (Fisher's exact test), Q value = 1

Table S8896.  Gene #821: 'PTPRN MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
PTPRN MUTATED 4 3 2 8
PTPRN WILD-TYPE 126 75 66 188
'PTPRN MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0203 (Fisher's exact test), Q value = 0.14

Table S8897.  Gene #821: 'PTPRN MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
PTPRN MUTATED 0 3 1 0 8 1 2 0 2
PTPRN WILD-TYPE 40 59 27 80 61 47 41 28 72

Figure S2500.  Get High-res Image Gene #821: 'PTPRN MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'PTPRN MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0945 (Fisher's exact test), Q value = 0.34

Table S8898.  Gene #821: 'PTPRN MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
PTPRN MUTATED 2 0 0 2
PTPRN WILD-TYPE 31 31 27 17
'PTPRN MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.871 (Fisher's exact test), Q value = 1

Table S8899.  Gene #821: 'PTPRN MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
PTPRN MUTATED 3 0 1 0
PTPRN WILD-TYPE 51 10 23 22
'THOC6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.195 (Fisher's exact test), Q value = 0.5

Table S8900.  Gene #822: 'THOC6 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
THOC6 MUTATED 4 1 2 1
THOC6 WILD-TYPE 174 182 99 19
'THOC6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.877 (Fisher's exact test), Q value = 1

Table S8901.  Gene #822: 'THOC6 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
THOC6 MUTATED 2 1 3
THOC6 WILD-TYPE 85 79 97
'THOC6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S8902.  Gene #822: 'THOC6 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
THOC6 MUTATED 1 3 3
THOC6 WILD-TYPE 88 157 135
'THOC6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S8903.  Gene #822: 'THOC6 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
THOC6 MUTATED 4 2 1
THOC6 WILD-TYPE 178 131 71
'THOC6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.558 (Fisher's exact test), Q value = 0.87

Table S8904.  Gene #822: 'THOC6 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
THOC6 MUTATED 1 3 2 2
THOC6 WILD-TYPE 111 93 90 184
'THOC6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.102 (Fisher's exact test), Q value = 0.35

Table S8905.  Gene #822: 'THOC6 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
THOC6 MUTATED 0 2 1 2 1 0 2
THOC6 WILD-TYPE 60 48 48 38 62 125 97
'THOC6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0422 (Fisher's exact test), Q value = 0.22

Table S8906.  Gene #822: 'THOC6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
THOC6 MUTATED 6 0 0 2
THOC6 WILD-TYPE 124 78 68 194

Figure S2501.  Get High-res Image Gene #822: 'THOC6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'THOC6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00446 (Fisher's exact test), Q value = 0.061

Table S8907.  Gene #822: 'THOC6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
THOC6 MUTATED 2 0 3 0 2 0 1 0 0
THOC6 WILD-TYPE 38 62 25 80 67 48 42 28 74

Figure S2502.  Get High-res Image Gene #822: 'THOC6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'HNRNPH3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.535 (Fisher's exact test), Q value = 0.85

Table S8908.  Gene #823: 'HNRNPH3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
HNRNPH3 MUTATED 3 1 0 0
HNRNPH3 WILD-TYPE 175 182 101 20
'HNRNPH3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.113 (Fisher's exact test), Q value = 0.37

Table S8909.  Gene #823: 'HNRNPH3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
HNRNPH3 MUTATED 0 0 3
HNRNPH3 WILD-TYPE 87 80 97
'HNRNPH3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.796 (Fisher's exact test), Q value = 1

Table S8910.  Gene #823: 'HNRNPH3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
HNRNPH3 MUTATED 0 2 1
HNRNPH3 WILD-TYPE 89 158 137
'HNRNPH3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.59 (Fisher's exact test), Q value = 0.89

Table S8911.  Gene #823: 'HNRNPH3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
HNRNPH3 MUTATED 1 2 0
HNRNPH3 WILD-TYPE 181 131 72
'HNRNPH3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.09 (Fisher's exact test), Q value = 0.33

Table S8912.  Gene #823: 'HNRNPH3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
HNRNPH3 MUTATED 0 3 0 1
HNRNPH3 WILD-TYPE 112 93 92 185
'HNRNPH3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0217 (Fisher's exact test), Q value = 0.15

Table S8913.  Gene #823: 'HNRNPH3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
HNRNPH3 MUTATED 0 0 3 0 0 1 0
HNRNPH3 WILD-TYPE 60 50 46 40 63 124 99

Figure S2503.  Get High-res Image Gene #823: 'HNRNPH3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'HNRNPH3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.306 (Fisher's exact test), Q value = 0.64

Table S8914.  Gene #823: 'HNRNPH3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
HNRNPH3 MUTATED 3 0 0 1
HNRNPH3 WILD-TYPE 127 78 68 195
'HNRNPH3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.282 (Fisher's exact test), Q value = 0.61

Table S8915.  Gene #823: 'HNRNPH3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
HNRNPH3 MUTATED 0 1 0 0 2 0 0 1 0
HNRNPH3 WILD-TYPE 40 61 28 80 67 48 43 27 74
'FSHR MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0108 (Fisher's exact test), Q value = 0.1

Table S8916.  Gene #824: 'FSHR MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
FSHR MUTATED 2 0 1 5
FSHR WILD-TYPE 44 58 63 38

Figure S2504.  Get High-res Image Gene #824: 'FSHR MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'FSHR MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.153 (Fisher's exact test), Q value = 0.44

Table S8917.  Gene #824: 'FSHR MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
FSHR MUTATED 4 3 1
FSHR WILD-TYPE 47 80 76
'FSHR MUTATION STATUS' versus 'CN_CNMF'

P value = 0.508 (Fisher's exact test), Q value = 0.83

Table S8918.  Gene #824: 'FSHR MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
FSHR MUTATED 10 5 4 0
FSHR WILD-TYPE 168 178 97 20
'FSHR MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0262 (Fisher's exact test), Q value = 0.16

Table S8919.  Gene #824: 'FSHR MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
FSHR MUTATED 8 1 2
FSHR WILD-TYPE 79 79 98

Figure S2505.  Get High-res Image Gene #824: 'FSHR MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'FSHR MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.21 (Fisher's exact test), Q value = 0.52

Table S8920.  Gene #824: 'FSHR MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
FSHR MUTATED 3 4 9
FSHR WILD-TYPE 86 156 129
'FSHR MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.554 (Fisher's exact test), Q value = 0.87

Table S8921.  Gene #824: 'FSHR MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
FSHR MUTATED 10 4 2
FSHR WILD-TYPE 172 129 70
'FSHR MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.897 (Fisher's exact test), Q value = 1

Table S8922.  Gene #824: 'FSHR MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
FSHR MUTATED 3 4 4 8
FSHR WILD-TYPE 109 92 88 178
'FSHR MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.445 (Fisher's exact test), Q value = 0.77

Table S8923.  Gene #824: 'FSHR MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
FSHR MUTATED 2 2 1 2 5 2 5
FSHR WILD-TYPE 58 48 48 38 58 123 94
'FSHR MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.436 (Fisher's exact test), Q value = 0.76

Table S8924.  Gene #824: 'FSHR MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
FSHR MUTATED 5 5 3 5
FSHR WILD-TYPE 125 73 65 191
'FSHR MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.332 (Fisher's exact test), Q value = 0.66

Table S8925.  Gene #824: 'FSHR MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
FSHR MUTATED 0 4 2 5 4 0 1 0 2
FSHR WILD-TYPE 40 58 26 75 65 48 42 28 72
'FSHR MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0959 (Fisher's exact test), Q value = 0.34

Table S8926.  Gene #824: 'FSHR MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
FSHR MUTATED 1 4 0 0
FSHR WILD-TYPE 32 27 27 19
'FSHR MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.426 (Fisher's exact test), Q value = 0.75

Table S8927.  Gene #824: 'FSHR MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
FSHR MUTATED 3 1 0 1
FSHR WILD-TYPE 51 9 24 21
'HUWE1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00018 (Fisher's exact test), Q value = 0.0078

Table S8928.  Gene #825: 'HUWE1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
HUWE1 MUTATED 4 2 0 9
HUWE1 WILD-TYPE 42 56 64 34

Figure S2506.  Get High-res Image Gene #825: 'HUWE1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'HUWE1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00416 (Fisher's exact test), Q value = 0.059

Table S8929.  Gene #825: 'HUWE1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
HUWE1 MUTATED 9 2 4
HUWE1 WILD-TYPE 42 81 73

Figure S2507.  Get High-res Image Gene #825: 'HUWE1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'HUWE1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00746 (Fisher's exact test), Q value = 0.08

Table S8930.  Gene #825: 'HUWE1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
HUWE1 MUTATED 28 11 8 0
HUWE1 WILD-TYPE 150 172 93 20

Figure S2508.  Get High-res Image Gene #825: 'HUWE1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'HUWE1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.059 (Fisher's exact test), Q value = 0.27

Table S8931.  Gene #825: 'HUWE1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
HUWE1 MUTATED 11 4 16
HUWE1 WILD-TYPE 76 76 84
'HUWE1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.419 (Fisher's exact test), Q value = 0.75

Table S8932.  Gene #825: 'HUWE1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
HUWE1 MUTATED 7 13 17
HUWE1 WILD-TYPE 82 147 121
'HUWE1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.444 (Fisher's exact test), Q value = 0.77

Table S8933.  Gene #825: 'HUWE1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
HUWE1 MUTATED 20 13 4
HUWE1 WILD-TYPE 162 120 68
'HUWE1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.18 (Fisher's exact test), Q value = 0.48

Table S8934.  Gene #825: 'HUWE1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
HUWE1 MUTATED 8 10 14 14
HUWE1 WILD-TYPE 104 86 78 172
'HUWE1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 7e-05 (Fisher's exact test), Q value = 0.0041

Table S8935.  Gene #825: 'HUWE1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
HUWE1 MUTATED 3 6 14 2 6 3 12
HUWE1 WILD-TYPE 57 44 35 38 57 122 87

Figure S2509.  Get High-res Image Gene #825: 'HUWE1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'HUWE1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.107 (Fisher's exact test), Q value = 0.36

Table S8936.  Gene #825: 'HUWE1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
HUWE1 MUTATED 17 9 2 18
HUWE1 WILD-TYPE 113 69 66 178
'HUWE1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00089 (Fisher's exact test), Q value = 0.023

Table S8937.  Gene #825: 'HUWE1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
HUWE1 MUTATED 4 10 3 7 15 1 0 3 3
HUWE1 WILD-TYPE 36 52 25 73 54 47 43 25 71

Figure S2510.  Get High-res Image Gene #825: 'HUWE1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'HUWE1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.167 (Fisher's exact test), Q value = 0.46

Table S8938.  Gene #825: 'HUWE1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
HUWE1 MUTATED 4 3 0 3
HUWE1 WILD-TYPE 29 28 27 16
'HUWE1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.92 (Fisher's exact test), Q value = 1

Table S8939.  Gene #825: 'HUWE1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
HUWE1 MUTATED 6 1 2 1
HUWE1 WILD-TYPE 48 9 22 21
'EIF2B5 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.12 (Fisher's exact test), Q value = 0.39

Table S8940.  Gene #826: 'EIF2B5 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
EIF2B5 MUTATED 1 1 0 3
EIF2B5 WILD-TYPE 45 57 64 40
'EIF2B5 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0896 (Fisher's exact test), Q value = 0.33

Table S8941.  Gene #826: 'EIF2B5 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
EIF2B5 MUTATED 3 2 0
EIF2B5 WILD-TYPE 48 81 77
'EIF2B5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.066 (Fisher's exact test), Q value = 0.28

Table S8942.  Gene #826: 'EIF2B5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
EIF2B5 MUTATED 9 4 1 2
EIF2B5 WILD-TYPE 169 179 100 18
'EIF2B5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S8943.  Gene #826: 'EIF2B5 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
EIF2B5 MUTATED 4 3 4
EIF2B5 WILD-TYPE 83 77 96
'EIF2B5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.752 (Fisher's exact test), Q value = 1

Table S8944.  Gene #826: 'EIF2B5 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
EIF2B5 MUTATED 2 7 6
EIF2B5 WILD-TYPE 87 153 132
'EIF2B5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.61 (Fisher's exact test), Q value = 0.91

Table S8945.  Gene #826: 'EIF2B5 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
EIF2B5 MUTATED 6 7 2
EIF2B5 WILD-TYPE 176 126 70
'EIF2B5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.038 (Fisher's exact test), Q value = 0.2

Table S8946.  Gene #826: 'EIF2B5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
EIF2B5 MUTATED 3 8 1 4
EIF2B5 WILD-TYPE 109 88 91 182

Figure S2511.  Get High-res Image Gene #826: 'EIF2B5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'EIF2B5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.248 (Fisher's exact test), Q value = 0.57

Table S8947.  Gene #826: 'EIF2B5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
EIF2B5 MUTATED 3 2 2 3 1 1 4
EIF2B5 WILD-TYPE 57 48 47 37 62 124 95
'EIF2B5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0397 (Fisher's exact test), Q value = 0.21

Table S8948.  Gene #826: 'EIF2B5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
EIF2B5 MUTATED 9 0 1 6
EIF2B5 WILD-TYPE 121 78 67 190

Figure S2512.  Get High-res Image Gene #826: 'EIF2B5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'EIF2B5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.144 (Fisher's exact test), Q value = 0.42

Table S8949.  Gene #826: 'EIF2B5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
EIF2B5 MUTATED 3 1 1 2 4 0 4 0 1
EIF2B5 WILD-TYPE 37 61 27 78 65 48 39 28 73
'EIF2B5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0845 (Fisher's exact test), Q value = 0.31

Table S8950.  Gene #826: 'EIF2B5 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
EIF2B5 MUTATED 0 1 0 2
EIF2B5 WILD-TYPE 33 30 27 17
'EIF2B5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S8951.  Gene #826: 'EIF2B5 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
EIF2B5 MUTATED 2 0 1 0
EIF2B5 WILD-TYPE 52 10 23 22
'C14ORF118 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.308 (Fisher's exact test), Q value = 0.64

Table S8952.  Gene #827: 'C14ORF118 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
C14ORF118 MUTATED 1 1 0 2
C14ORF118 WILD-TYPE 45 57 64 41
'C14ORF118 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.453 (Fisher's exact test), Q value = 0.78

Table S8953.  Gene #827: 'C14ORF118 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
C14ORF118 MUTATED 0 3 1
C14ORF118 WILD-TYPE 51 80 76
'C14ORF118 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.339 (Fisher's exact test), Q value = 0.67

Table S8954.  Gene #827: 'C14ORF118 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
C14ORF118 MUTATED 5 5 0 0
C14ORF118 WILD-TYPE 173 178 101 20
'C14ORF118 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.878 (Fisher's exact test), Q value = 1

Table S8955.  Gene #827: 'C14ORF118 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
C14ORF118 MUTATED 2 1 3
C14ORF118 WILD-TYPE 85 79 97
'C14ORF118 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.832 (Fisher's exact test), Q value = 1

Table S8956.  Gene #827: 'C14ORF118 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
C14ORF118 MUTATED 1 4 4
C14ORF118 WILD-TYPE 88 156 134
'C14ORF118 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.406 (Fisher's exact test), Q value = 0.73

Table S8957.  Gene #827: 'C14ORF118 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
C14ORF118 MUTATED 5 4 0
C14ORF118 WILD-TYPE 177 129 72
'C14ORF118 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.969 (Fisher's exact test), Q value = 1

Table S8958.  Gene #827: 'C14ORF118 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
C14ORF118 MUTATED 3 2 1 4
C14ORF118 WILD-TYPE 109 94 91 182
'C14ORF118 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.498 (Fisher's exact test), Q value = 0.82

Table S8959.  Gene #827: 'C14ORF118 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
C14ORF118 MUTATED 1 3 1 1 1 1 2
C14ORF118 WILD-TYPE 59 47 48 39 62 124 97
'C14ORF118 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.474 (Fisher's exact test), Q value = 0.8

Table S8960.  Gene #827: 'C14ORF118 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
C14ORF118 MUTATED 4 2 0 3
C14ORF118 WILD-TYPE 126 76 68 193
'C14ORF118 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.242 (Fisher's exact test), Q value = 0.57

Table S8961.  Gene #827: 'C14ORF118 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
C14ORF118 MUTATED 3 1 1 2 1 0 1 0 0
C14ORF118 WILD-TYPE 37 61 27 78 68 48 42 28 74
'USP9X MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00319 (Fisher's exact test), Q value = 0.051

Table S8962.  Gene #828: 'USP9X MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
USP9X MUTATED 4 0 0 4
USP9X WILD-TYPE 42 58 64 39

Figure S2513.  Get High-res Image Gene #828: 'USP9X MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'USP9X MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0478 (Fisher's exact test), Q value = 0.23

Table S8963.  Gene #828: 'USP9X MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
USP9X MUTATED 5 1 2
USP9X WILD-TYPE 46 82 75

Figure S2514.  Get High-res Image Gene #828: 'USP9X MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'USP9X MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00016 (Fisher's exact test), Q value = 0.0072

Table S8964.  Gene #828: 'USP9X MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
USP9X MUTATED 24 5 2 1
USP9X WILD-TYPE 154 178 99 19

Figure S2515.  Get High-res Image Gene #828: 'USP9X MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'USP9X MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.232 (Fisher's exact test), Q value = 0.55

Table S8965.  Gene #828: 'USP9X MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
USP9X MUTATED 5 7 13
USP9X WILD-TYPE 82 73 87
'USP9X MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.605 (Fisher's exact test), Q value = 0.91

Table S8966.  Gene #828: 'USP9X MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
USP9X MUTATED 6 9 12
USP9X WILD-TYPE 83 151 126
'USP9X MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.965 (Fisher's exact test), Q value = 1

Table S8967.  Gene #828: 'USP9X MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
USP9X MUTATED 12 10 5
USP9X WILD-TYPE 170 123 67
'USP9X MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.237 (Fisher's exact test), Q value = 0.56

Table S8968.  Gene #828: 'USP9X MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
USP9X MUTATED 7 11 6 9
USP9X WILD-TYPE 105 85 86 177
'USP9X MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00024 (Fisher's exact test), Q value = 0.0094

Table S8969.  Gene #828: 'USP9X MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
USP9X MUTATED 7 3 10 3 2 1 7
USP9X WILD-TYPE 53 47 39 37 61 124 92

Figure S2516.  Get High-res Image Gene #828: 'USP9X MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'USP9X MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00222 (Fisher's exact test), Q value = 0.04

Table S8970.  Gene #828: 'USP9X MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
USP9X MUTATED 18 2 1 11
USP9X WILD-TYPE 112 76 67 185

Figure S2517.  Get High-res Image Gene #828: 'USP9X MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'USP9X MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0312 (Fisher's exact test), Q value = 0.18

Table S8971.  Gene #828: 'USP9X MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
USP9X MUTATED 5 4 3 3 11 1 2 0 3
USP9X WILD-TYPE 35 58 25 77 58 47 41 28 71

Figure S2518.  Get High-res Image Gene #828: 'USP9X MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'USP9X MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00329 (Fisher's exact test), Q value = 0.052

Table S8972.  Gene #828: 'USP9X MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
USP9X MUTATED 1 0 0 4
USP9X WILD-TYPE 32 31 27 15

Figure S2519.  Get High-res Image Gene #828: 'USP9X MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'USP9X MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.757 (Fisher's exact test), Q value = 1

Table S8973.  Gene #828: 'USP9X MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
USP9X MUTATED 4 0 1 0
USP9X WILD-TYPE 50 10 23 22
'SLC35A5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.531 (Fisher's exact test), Q value = 0.85

Table S8974.  Gene #829: 'SLC35A5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
SLC35A5 MUTATED 4 4 0 0
SLC35A5 WILD-TYPE 174 179 101 20
'SLC35A5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.893 (Fisher's exact test), Q value = 1

Table S8975.  Gene #829: 'SLC35A5 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
SLC35A5 MUTATED 3 2 2
SLC35A5 WILD-TYPE 84 78 98
'SLC35A5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.614 (Fisher's exact test), Q value = 0.91

Table S8976.  Gene #829: 'SLC35A5 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
SLC35A5 MUTATED 1 2 4
SLC35A5 WILD-TYPE 88 158 134
'SLC35A5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.683 (Fisher's exact test), Q value = 0.96

Table S8977.  Gene #829: 'SLC35A5 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
SLC35A5 MUTATED 4 3 0
SLC35A5 WILD-TYPE 178 130 72
'SLC35A5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.444 (Fisher's exact test), Q value = 0.77

Table S8978.  Gene #829: 'SLC35A5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
SLC35A5 MUTATED 4 1 1 2
SLC35A5 WILD-TYPE 108 95 91 184
'SLC35A5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0714 (Fisher's exact test), Q value = 0.29

Table S8979.  Gene #829: 'SLC35A5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
SLC35A5 MUTATED 1 0 2 2 2 0 1
SLC35A5 WILD-TYPE 59 50 47 38 61 125 98
'SLC35A5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.683 (Fisher's exact test), Q value = 0.96

Table S8980.  Gene #829: 'SLC35A5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
SLC35A5 MUTATED 3 2 1 2
SLC35A5 WILD-TYPE 127 76 67 194
'SLC35A5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.976 (Fisher's exact test), Q value = 1

Table S8981.  Gene #829: 'SLC35A5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
SLC35A5 MUTATED 1 1 0 1 2 0 1 0 2
SLC35A5 WILD-TYPE 39 61 28 79 67 48 42 28 72
'FAS MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0124 (Fisher's exact test), Q value = 0.11

Table S8982.  Gene #830: 'FAS MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
FAS MUTATED 8 0 1 0
FAS WILD-TYPE 170 183 100 20

Figure S2520.  Get High-res Image Gene #830: 'FAS MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'FAS MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.714 (Fisher's exact test), Q value = 0.98

Table S8983.  Gene #830: 'FAS MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
FAS MUTATED 3 1 3
FAS WILD-TYPE 84 79 97
'FAS MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.138 (Fisher's exact test), Q value = 0.41

Table S8984.  Gene #830: 'FAS MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
FAS MUTATED 0 2 5
FAS WILD-TYPE 89 158 133
'FAS MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.308 (Fisher's exact test), Q value = 0.64

Table S8985.  Gene #830: 'FAS MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
FAS MUTATED 3 4 0
FAS WILD-TYPE 179 129 72
'FAS MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.26 (Fisher's exact test), Q value = 0.58

Table S8986.  Gene #830: 'FAS MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
FAS MUTATED 1 4 2 2
FAS WILD-TYPE 111 92 90 184
'FAS MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.219 (Fisher's exact test), Q value = 0.53

Table S8987.  Gene #830: 'FAS MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
FAS MUTATED 1 2 2 1 1 0 2
FAS WILD-TYPE 59 48 47 39 62 125 97
'FAS MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.736 (Fisher's exact test), Q value = 1

Table S8988.  Gene #830: 'FAS MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
FAS MUTATED 3 1 0 5
FAS WILD-TYPE 127 77 68 191
'FAS MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.901 (Fisher's exact test), Q value = 1

Table S8989.  Gene #830: 'FAS MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
FAS MUTATED 1 2 1 2 1 0 0 0 2
FAS WILD-TYPE 39 60 27 78 68 48 43 28 72
'PGM2 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S8990.  Gene #831: 'PGM2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
PGM2 MUTATED 1 2 1 0
PGM2 WILD-TYPE 177 181 100 20
'PGM2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.392 (Fisher's exact test), Q value = 0.72

Table S8991.  Gene #831: 'PGM2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
PGM2 MUTATED 1 0 3
PGM2 WILD-TYPE 86 80 97
'PGM2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.686 (Fisher's exact test), Q value = 0.96

Table S8992.  Gene #831: 'PGM2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
PGM2 MUTATED 0 2 2
PGM2 WILD-TYPE 89 158 136
'PGM2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.404 (Fisher's exact test), Q value = 0.73

Table S8993.  Gene #831: 'PGM2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
PGM2 MUTATED 3 0 1
PGM2 WILD-TYPE 179 133 71
'PGM2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.141 (Fisher's exact test), Q value = 0.42

Table S8994.  Gene #831: 'PGM2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
PGM2 MUTATED 1 1 2 0
PGM2 WILD-TYPE 111 95 90 186
'PGM2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0807 (Fisher's exact test), Q value = 0.31

Table S8995.  Gene #831: 'PGM2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
PGM2 MUTATED 0 1 1 0 2 0 0
PGM2 WILD-TYPE 60 49 48 40 61 125 99
'PGM2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.535 (Fisher's exact test), Q value = 0.85

Table S8996.  Gene #831: 'PGM2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
PGM2 MUTATED 2 0 1 1
PGM2 WILD-TYPE 128 78 67 195
'PGM2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.197 (Fisher's exact test), Q value = 0.5

Table S8997.  Gene #831: 'PGM2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
PGM2 MUTATED 2 1 0 0 1 0 0 0 0
PGM2 WILD-TYPE 38 61 28 80 68 48 43 28 74
'STX16 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.274 (Fisher's exact test), Q value = 0.6

Table S8998.  Gene #832: 'STX16 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
STX16 MUTATED 2 0 1 0
STX16 WILD-TYPE 44 58 63 43
'STX16 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.254 (Fisher's exact test), Q value = 0.58

Table S8999.  Gene #832: 'STX16 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
STX16 MUTATED 2 1 0
STX16 WILD-TYPE 49 82 77
'STX16 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.848 (Fisher's exact test), Q value = 1

Table S9000.  Gene #832: 'STX16 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
STX16 MUTATED 3 2 2 0
STX16 WILD-TYPE 175 181 99 20
'STX16 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.154 (Fisher's exact test), Q value = 0.44

Table S9001.  Gene #832: 'STX16 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
STX16 MUTATED 3 1 0
STX16 WILD-TYPE 84 79 100
'STX16 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.331 (Fisher's exact test), Q value = 0.66

Table S9002.  Gene #832: 'STX16 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
STX16 MUTATED 1 1 4
STX16 WILD-TYPE 88 159 134
'STX16 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.76 (Fisher's exact test), Q value = 1

Table S9003.  Gene #832: 'STX16 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
STX16 MUTATED 4 1 1
STX16 WILD-TYPE 178 132 71
'STX16 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.285 (Fisher's exact test), Q value = 0.61

Table S9004.  Gene #832: 'STX16 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
STX16 MUTATED 1 0 3 3
STX16 WILD-TYPE 111 96 89 183
'STX16 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.787 (Fisher's exact test), Q value = 1

Table S9005.  Gene #832: 'STX16 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
STX16 MUTATED 1 1 0 0 2 1 2
STX16 WILD-TYPE 59 49 49 40 61 124 97
'STX16 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.757 (Fisher's exact test), Q value = 1

Table S9006.  Gene #832: 'STX16 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
STX16 MUTATED 1 2 1 3
STX16 WILD-TYPE 129 76 67 193
'STX16 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.41 (Fisher's exact test), Q value = 0.74

Table S9007.  Gene #832: 'STX16 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
STX16 MUTATED 0 3 0 0 2 0 1 0 1
STX16 WILD-TYPE 40 59 28 80 67 48 42 28 73
'TJP1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00532 (Fisher's exact test), Q value = 0.066

Table S9008.  Gene #833: 'TJP1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
TJP1 MUTATED 2 0 0 4
TJP1 WILD-TYPE 44 58 64 39

Figure S2521.  Get High-res Image Gene #833: 'TJP1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'TJP1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0155 (Fisher's exact test), Q value = 0.12

Table S9009.  Gene #833: 'TJP1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
TJP1 MUTATED 4 0 2
TJP1 WILD-TYPE 47 83 75

Figure S2522.  Get High-res Image Gene #833: 'TJP1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'TJP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.062 (Fisher's exact test), Q value = 0.27

Table S9010.  Gene #833: 'TJP1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
TJP1 MUTATED 14 5 2 1
TJP1 WILD-TYPE 164 178 99 19
'TJP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.269 (Fisher's exact test), Q value = 0.59

Table S9011.  Gene #833: 'TJP1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
TJP1 MUTATED 7 2 7
TJP1 WILD-TYPE 80 78 93
'TJP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.724 (Fisher's exact test), Q value = 0.99

Table S9012.  Gene #833: 'TJP1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
TJP1 MUTATED 4 5 7
TJP1 WILD-TYPE 85 155 131
'TJP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S9013.  Gene #833: 'TJP1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
TJP1 MUTATED 8 5 3
TJP1 WILD-TYPE 174 128 69
'TJP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.408 (Fisher's exact test), Q value = 0.73

Table S9014.  Gene #833: 'TJP1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
TJP1 MUTATED 4 7 5 6
TJP1 WILD-TYPE 108 89 87 180
'TJP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 4e-04 (Fisher's exact test), Q value = 0.013

Table S9015.  Gene #833: 'TJP1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
TJP1 MUTATED 3 3 8 2 1 0 5
TJP1 WILD-TYPE 57 47 41 38 62 125 94

Figure S2523.  Get High-res Image Gene #833: 'TJP1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'TJP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0476 (Fisher's exact test), Q value = 0.23

Table S9016.  Gene #833: 'TJP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
TJP1 MUTATED 7 7 0 7
TJP1 WILD-TYPE 123 71 68 189

Figure S2524.  Get High-res Image Gene #833: 'TJP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'TJP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00645 (Fisher's exact test), Q value = 0.074

Table S9017.  Gene #833: 'TJP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
TJP1 MUTATED 1 6 2 1 8 2 1 0 0
TJP1 WILD-TYPE 39 56 26 79 61 46 42 28 74

Figure S2525.  Get High-res Image Gene #833: 'TJP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'TJP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S9018.  Gene #833: 'TJP1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
TJP1 MUTATED 1 1 1 1
TJP1 WILD-TYPE 32 30 26 18
'TJP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.87 (Fisher's exact test), Q value = 1

Table S9019.  Gene #833: 'TJP1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
TJP1 MUTATED 3 0 1 0
TJP1 WILD-TYPE 51 10 23 22
'INTS3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0654 (Fisher's exact test), Q value = 0.28

Table S9020.  Gene #834: 'INTS3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
INTS3 MUTATED 1 0 0 2
INTS3 WILD-TYPE 45 58 64 41
'INTS3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0136 (Fisher's exact test), Q value = 0.11

Table S9021.  Gene #834: 'INTS3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
INTS3 MUTATED 3 0 0
INTS3 WILD-TYPE 48 83 77

Figure S2526.  Get High-res Image Gene #834: 'INTS3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'INTS3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.127 (Fisher's exact test), Q value = 0.4

Table S9022.  Gene #834: 'INTS3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
INTS3 MUTATED 5 1 1 1
INTS3 WILD-TYPE 173 182 100 19
'INTS3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.864 (Fisher's exact test), Q value = 1

Table S9023.  Gene #834: 'INTS3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
INTS3 MUTATED 1 2 2
INTS3 WILD-TYPE 86 78 98
'INTS3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.617 (Fisher's exact test), Q value = 0.92

Table S9024.  Gene #834: 'INTS3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
INTS3 MUTATED 1 2 4
INTS3 WILD-TYPE 88 158 134
'INTS3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S9025.  Gene #834: 'INTS3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
INTS3 MUTATED 4 2 1
INTS3 WILD-TYPE 178 131 71
'INTS3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.231 (Fisher's exact test), Q value = 0.55

Table S9026.  Gene #834: 'INTS3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
INTS3 MUTATED 3 3 0 2
INTS3 WILD-TYPE 109 93 92 184
'INTS3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0701 (Fisher's exact test), Q value = 0.29

Table S9027.  Gene #834: 'INTS3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
INTS3 MUTATED 3 0 1 1 0 0 3
INTS3 WILD-TYPE 57 50 48 39 63 125 96
'INTS3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.953 (Fisher's exact test), Q value = 1

Table S9028.  Gene #834: 'INTS3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
INTS3 MUTATED 3 1 1 3
INTS3 WILD-TYPE 127 77 67 193
'INTS3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0325 (Fisher's exact test), Q value = 0.18

Table S9029.  Gene #834: 'INTS3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
INTS3 MUTATED 0 0 1 0 4 1 2 0 0
INTS3 WILD-TYPE 40 62 27 80 65 47 41 28 74

Figure S2527.  Get High-res Image Gene #834: 'INTS3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'DBN1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0545 (Fisher's exact test), Q value = 0.25

Table S9030.  Gene #835: 'DBN1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
DBN1 MUTATED 9 2 1 1
DBN1 WILD-TYPE 169 181 100 19
'DBN1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.863 (Fisher's exact test), Q value = 1

Table S9031.  Gene #835: 'DBN1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
DBN1 MUTATED 3 3 5
DBN1 WILD-TYPE 84 77 95
'DBN1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.286 (Fisher's exact test), Q value = 0.61

Table S9032.  Gene #835: 'DBN1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
DBN1 MUTATED 2 3 7
DBN1 WILD-TYPE 87 157 131
'DBN1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.393 (Fisher's exact test), Q value = 0.72

Table S9033.  Gene #835: 'DBN1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
DBN1 MUTATED 7 2 3
DBN1 WILD-TYPE 175 131 69
'DBN1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.193 (Fisher's exact test), Q value = 0.5

Table S9034.  Gene #835: 'DBN1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
DBN1 MUTATED 3 5 3 2
DBN1 WILD-TYPE 109 91 89 184
'DBN1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00915 (Fisher's exact test), Q value = 0.09

Table S9035.  Gene #835: 'DBN1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
DBN1 MUTATED 2 1 4 3 2 0 1
DBN1 WILD-TYPE 58 49 45 37 61 125 98

Figure S2528.  Get High-res Image Gene #835: 'DBN1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'DBN1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.313 (Fisher's exact test), Q value = 0.64

Table S9036.  Gene #835: 'DBN1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
DBN1 MUTATED 6 3 1 3
DBN1 WILD-TYPE 124 75 67 193
'DBN1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0399 (Fisher's exact test), Q value = 0.21

Table S9037.  Gene #835: 'DBN1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
DBN1 MUTATED 1 2 0 0 5 2 3 0 0
DBN1 WILD-TYPE 39 60 28 80 64 46 40 28 74

Figure S2529.  Get High-res Image Gene #835: 'DBN1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'DBN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0795 (Fisher's exact test), Q value = 0.3

Table S9038.  Gene #835: 'DBN1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
DBN1 MUTATED 0 2 1 3
DBN1 WILD-TYPE 33 29 26 16
'DBN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.157 (Fisher's exact test), Q value = 0.45

Table S9039.  Gene #835: 'DBN1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
DBN1 MUTATED 1 0 3 2
DBN1 WILD-TYPE 53 10 21 20
'MCCC1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00391 (Fisher's exact test), Q value = 0.057

Table S9040.  Gene #836: 'MCCC1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
MCCC1 MUTATED 3 0 0 4
MCCC1 WILD-TYPE 43 58 64 39

Figure S2530.  Get High-res Image Gene #836: 'MCCC1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'MCCC1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.105 (Fisher's exact test), Q value = 0.36

Table S9041.  Gene #836: 'MCCC1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
MCCC1 MUTATED 4 1 2
MCCC1 WILD-TYPE 47 82 75
'MCCC1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0152 (Fisher's exact test), Q value = 0.12

Table S9042.  Gene #836: 'MCCC1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
MCCC1 MUTATED 14 3 2 0
MCCC1 WILD-TYPE 164 180 99 20

Figure S2531.  Get High-res Image Gene #836: 'MCCC1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'MCCC1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.18 (Fisher's exact test), Q value = 0.48

Table S9043.  Gene #836: 'MCCC1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
MCCC1 MUTATED 3 6 2
MCCC1 WILD-TYPE 84 74 98
'MCCC1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0763 (Fisher's exact test), Q value = 0.3

Table S9044.  Gene #836: 'MCCC1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
MCCC1 MUTATED 1 11 4
MCCC1 WILD-TYPE 88 149 134
'MCCC1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.196 (Fisher's exact test), Q value = 0.5

Table S9045.  Gene #836: 'MCCC1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
MCCC1 MUTATED 6 9 1
MCCC1 WILD-TYPE 176 124 71
'MCCC1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.102 (Fisher's exact test), Q value = 0.35

Table S9046.  Gene #836: 'MCCC1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
MCCC1 MUTATED 6 5 0 8
MCCC1 WILD-TYPE 106 91 92 178
'MCCC1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00034 (Fisher's exact test), Q value = 0.012

Table S9047.  Gene #836: 'MCCC1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
MCCC1 MUTATED 5 5 2 0 0 0 7
MCCC1 WILD-TYPE 55 45 47 40 63 125 92

Figure S2532.  Get High-res Image Gene #836: 'MCCC1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'MCCC1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.548 (Fisher's exact test), Q value = 0.87

Table S9048.  Gene #836: 'MCCC1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
MCCC1 MUTATED 7 1 2 8
MCCC1 WILD-TYPE 123 77 66 188
'MCCC1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00134 (Fisher's exact test), Q value = 0.03

Table S9049.  Gene #836: 'MCCC1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
MCCC1 MUTATED 1 0 4 1 7 0 3 1 1
MCCC1 WILD-TYPE 39 62 24 79 62 48 40 27 73

Figure S2533.  Get High-res Image Gene #836: 'MCCC1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'ETF1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.074 (Fisher's exact test), Q value = 0.29

Table S9050.  Gene #837: 'ETF1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ETF1 MUTATED 2 0 0 2
ETF1 WILD-TYPE 44 58 64 41
'ETF1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.177 (Fisher's exact test), Q value = 0.48

Table S9051.  Gene #837: 'ETF1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ETF1 MUTATED 2 0 2
ETF1 WILD-TYPE 49 83 75
'ETF1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.224 (Fisher's exact test), Q value = 0.54

Table S9052.  Gene #837: 'ETF1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ETF1 MUTATED 8 2 2 0
ETF1 WILD-TYPE 170 181 99 20
'ETF1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.604 (Fisher's exact test), Q value = 0.91

Table S9053.  Gene #837: 'ETF1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ETF1 MUTATED 3 1 4
ETF1 WILD-TYPE 84 79 96
'ETF1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.833 (Fisher's exact test), Q value = 1

Table S9054.  Gene #837: 'ETF1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ETF1 MUTATED 1 4 4
ETF1 WILD-TYPE 88 156 134
'ETF1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.822 (Fisher's exact test), Q value = 1

Table S9055.  Gene #837: 'ETF1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ETF1 MUTATED 4 4 1
ETF1 WILD-TYPE 178 129 71
'ETF1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.856 (Fisher's exact test), Q value = 1

Table S9056.  Gene #837: 'ETF1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ETF1 MUTATED 2 3 3 4
ETF1 WILD-TYPE 110 93 89 182
'ETF1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.021 (Fisher's exact test), Q value = 0.15

Table S9057.  Gene #837: 'ETF1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ETF1 MUTATED 2 0 3 0 4 0 3
ETF1 WILD-TYPE 58 50 46 40 59 125 96

Figure S2534.  Get High-res Image Gene #837: 'ETF1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ETF1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.232 (Fisher's exact test), Q value = 0.55

Table S9058.  Gene #837: 'ETF1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ETF1 MUTATED 4 4 0 4
ETF1 WILD-TYPE 126 74 68 192
'ETF1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.569 (Fisher's exact test), Q value = 0.88

Table S9059.  Gene #837: 'ETF1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ETF1 MUTATED 1 3 1 1 3 1 1 1 0
ETF1 WILD-TYPE 39 59 27 79 66 47 42 27 74
'ALDOB MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0268 (Fisher's exact test), Q value = 0.17

Table S9060.  Gene #838: 'ALDOB MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ALDOB MUTATED 3 0 0 2
ALDOB WILD-TYPE 43 58 64 41

Figure S2535.  Get High-res Image Gene #838: 'ALDOB MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'ALDOB MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00085 (Fisher's exact test), Q value = 0.022

Table S9061.  Gene #838: 'ALDOB MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ALDOB MUTATED 5 0 0
ALDOB WILD-TYPE 46 83 77

Figure S2536.  Get High-res Image Gene #838: 'ALDOB MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'ALDOB MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-04 (Fisher's exact test), Q value = 0.0052

Table S9062.  Gene #838: 'ALDOB MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ALDOB MUTATED 14 0 1 0
ALDOB WILD-TYPE 164 183 100 20

Figure S2537.  Get High-res Image Gene #838: 'ALDOB MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ALDOB MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0668 (Fisher's exact test), Q value = 0.28

Table S9063.  Gene #838: 'ALDOB MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ALDOB MUTATED 4 0 6
ALDOB WILD-TYPE 83 80 94
'ALDOB MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.199 (Fisher's exact test), Q value = 0.5

Table S9064.  Gene #838: 'ALDOB MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ALDOB MUTATED 1 3 7
ALDOB WILD-TYPE 88 157 131
'ALDOB MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.558 (Fisher's exact test), Q value = 0.87

Table S9065.  Gene #838: 'ALDOB MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ALDOB MUTATED 7 3 1
ALDOB WILD-TYPE 175 130 71
'ALDOB MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0299 (Fisher's exact test), Q value = 0.18

Table S9066.  Gene #838: 'ALDOB MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ALDOB MUTATED 0 4 6 5
ALDOB WILD-TYPE 112 92 86 181

Figure S2538.  Get High-res Image Gene #838: 'ALDOB MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'ALDOB MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00395 (Fisher's exact test), Q value = 0.057

Table S9067.  Gene #838: 'ALDOB MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ALDOB MUTATED 1 3 5 0 1 0 5
ALDOB WILD-TYPE 59 47 44 40 62 125 94

Figure S2539.  Get High-res Image Gene #838: 'ALDOB MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ALDOB MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.131 (Fisher's exact test), Q value = 0.4

Table S9068.  Gene #838: 'ALDOB MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ALDOB MUTATED 6 4 0 4
ALDOB WILD-TYPE 124 74 68 192
'ALDOB MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.274 (Fisher's exact test), Q value = 0.6

Table S9069.  Gene #838: 'ALDOB MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ALDOB MUTATED 2 3 0 2 4 0 2 1 0
ALDOB WILD-TYPE 38 59 28 78 65 48 41 27 74
'ALDOB MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.872 (Fisher's exact test), Q value = 1

Table S9070.  Gene #838: 'ALDOB MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
ALDOB MUTATED 1 1 0 1
ALDOB WILD-TYPE 32 30 27 18
'ALDOB MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.564 (Fisher's exact test), Q value = 0.87

Table S9071.  Gene #838: 'ALDOB MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
ALDOB MUTATED 3 0 0 0
ALDOB WILD-TYPE 51 10 24 22
'TFEC MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0804 (Fisher's exact test), Q value = 0.31

Table S9072.  Gene #839: 'TFEC MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
TFEC MUTATED 9 2 1 0
TFEC WILD-TYPE 169 181 100 20
'TFEC MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.309 (Fisher's exact test), Q value = 0.64

Table S9073.  Gene #839: 'TFEC MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
TFEC MUTATED 5 1 4
TFEC WILD-TYPE 82 79 96
'TFEC MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.391 (Fisher's exact test), Q value = 0.72

Table S9074.  Gene #839: 'TFEC MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
TFEC MUTATED 1 4 6
TFEC WILD-TYPE 88 156 132
'TFEC MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.194 (Fisher's exact test), Q value = 0.5

Table S9075.  Gene #839: 'TFEC MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
TFEC MUTATED 5 6 0
TFEC WILD-TYPE 177 127 72
'TFEC MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0078 (Fisher's exact test), Q value = 0.082

Table S9076.  Gene #839: 'TFEC MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
TFEC MUTATED 0 7 2 3
TFEC WILD-TYPE 112 89 90 183

Figure S2540.  Get High-res Image Gene #839: 'TFEC MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'TFEC MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.024 (Fisher's exact test), Q value = 0.16

Table S9077.  Gene #839: 'TFEC MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
TFEC MUTATED 0 2 2 3 1 0 4
TFEC WILD-TYPE 60 48 47 37 62 125 95

Figure S2541.  Get High-res Image Gene #839: 'TFEC MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'TFEC MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.897 (Fisher's exact test), Q value = 1

Table S9078.  Gene #839: 'TFEC MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
TFEC MUTATED 4 2 1 4
TFEC WILD-TYPE 126 76 67 192
'TFEC MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.467 (Fisher's exact test), Q value = 0.79

Table S9079.  Gene #839: 'TFEC MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
TFEC MUTATED 2 2 1 0 3 1 0 0 2
TFEC WILD-TYPE 38 60 27 80 66 47 43 28 72
'TFEC MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.167 (Fisher's exact test), Q value = 0.46

Table S9080.  Gene #839: 'TFEC MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
TFEC MUTATED 0 0 2 1
TFEC WILD-TYPE 33 31 25 18
'TFEC MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.447 (Fisher's exact test), Q value = 0.77

Table S9081.  Gene #839: 'TFEC MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
TFEC MUTATED 1 0 2 0
TFEC WILD-TYPE 53 10 22 22
'NFATC3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.888 (Fisher's exact test), Q value = 1

Table S9082.  Gene #840: 'NFATC3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
NFATC3 MUTATED 0 1 1 1
NFATC3 WILD-TYPE 46 57 63 42
'NFATC3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.119 (Fisher's exact test), Q value = 0.38

Table S9083.  Gene #840: 'NFATC3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
NFATC3 MUTATED 0 3 0
NFATC3 WILD-TYPE 51 80 77
'NFATC3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.499 (Fisher's exact test), Q value = 0.83

Table S9084.  Gene #840: 'NFATC3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
NFATC3 MUTATED 7 4 2 1
NFATC3 WILD-TYPE 171 179 99 19
'NFATC3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.665 (Fisher's exact test), Q value = 0.95

Table S9085.  Gene #840: 'NFATC3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
NFATC3 MUTATED 2 4 4
NFATC3 WILD-TYPE 85 76 96
'NFATC3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S9086.  Gene #840: 'NFATC3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
NFATC3 MUTATED 3 5 5
NFATC3 WILD-TYPE 86 155 133
'NFATC3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.57 (Fisher's exact test), Q value = 0.88

Table S9087.  Gene #840: 'NFATC3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
NFATC3 MUTATED 6 6 1
NFATC3 WILD-TYPE 176 127 71
'NFATC3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.417 (Fisher's exact test), Q value = 0.75

Table S9088.  Gene #840: 'NFATC3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
NFATC3 MUTATED 6 2 2 4
NFATC3 WILD-TYPE 106 94 90 182
'NFATC3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.649 (Fisher's exact test), Q value = 0.94

Table S9089.  Gene #840: 'NFATC3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
NFATC3 MUTATED 3 1 2 0 3 2 3
NFATC3 WILD-TYPE 57 49 47 40 60 123 96
'NFATC3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.599 (Fisher's exact test), Q value = 0.9

Table S9090.  Gene #840: 'NFATC3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
NFATC3 MUTATED 3 4 1 6
NFATC3 WILD-TYPE 127 74 67 190
'NFATC3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0775 (Fisher's exact test), Q value = 0.3

Table S9091.  Gene #840: 'NFATC3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
NFATC3 MUTATED 1 4 3 0 3 1 0 0 2
NFATC3 WILD-TYPE 39 58 25 80 66 47 43 28 72
'NFATC3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.871 (Fisher's exact test), Q value = 1

Table S9092.  Gene #840: 'NFATC3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
NFATC3 MUTATED 1 1 0 1
NFATC3 WILD-TYPE 32 30 27 18
'NFATC3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.312 (Fisher's exact test), Q value = 0.64

Table S9093.  Gene #840: 'NFATC3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
NFATC3 MUTATED 1 1 1 0
NFATC3 WILD-TYPE 53 9 23 22
'ZNF83 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00235 (Fisher's exact test), Q value = 0.042

Table S9094.  Gene #841: 'ZNF83 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ZNF83 MUTATED 2 1 0 6
ZNF83 WILD-TYPE 44 57 64 37

Figure S2542.  Get High-res Image Gene #841: 'ZNF83 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'ZNF83 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.342 (Fisher's exact test), Q value = 0.67

Table S9095.  Gene #841: 'ZNF83 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ZNF83 MUTATED 4 2 3
ZNF83 WILD-TYPE 47 81 74
'ZNF83 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0094 (Fisher's exact test), Q value = 0.091

Table S9096.  Gene #841: 'ZNF83 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ZNF83 MUTATED 14 2 3 0
ZNF83 WILD-TYPE 164 181 98 20

Figure S2543.  Get High-res Image Gene #841: 'ZNF83 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ZNF83 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.194 (Fisher's exact test), Q value = 0.5

Table S9097.  Gene #841: 'ZNF83 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ZNF83 MUTATED 6 1 4
ZNF83 WILD-TYPE 81 79 96
'ZNF83 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.817 (Fisher's exact test), Q value = 1

Table S9098.  Gene #841: 'ZNF83 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ZNF83 MUTATED 4 6 7
ZNF83 WILD-TYPE 85 154 131
'ZNF83 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.807 (Fisher's exact test), Q value = 1

Table S9099.  Gene #841: 'ZNF83 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ZNF83 MUTATED 8 5 4
ZNF83 WILD-TYPE 174 128 68
'ZNF83 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.201 (Fisher's exact test), Q value = 0.51

Table S9100.  Gene #841: 'ZNF83 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ZNF83 MUTATED 1 5 4 10
ZNF83 WILD-TYPE 111 91 88 176
'ZNF83 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0947 (Fisher's exact test), Q value = 0.34

Table S9101.  Gene #841: 'ZNF83 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ZNF83 MUTATED 2 1 6 0 1 4 6
ZNF83 WILD-TYPE 58 49 43 40 62 121 93
'ZNF83 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.058 (Fisher's exact test), Q value = 0.26

Table S9102.  Gene #841: 'ZNF83 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ZNF83 MUTATED 3 3 0 13
ZNF83 WILD-TYPE 127 75 68 183
'ZNF83 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.495 (Fisher's exact test), Q value = 0.82

Table S9103.  Gene #841: 'ZNF83 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ZNF83 MUTATED 1 3 3 4 4 0 1 0 3
ZNF83 WILD-TYPE 39 59 25 76 65 48 42 28 71
'ZNF83 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.257 (Fisher's exact test), Q value = 0.58

Table S9104.  Gene #841: 'ZNF83 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
ZNF83 MUTATED 2 0 0 1
ZNF83 WILD-TYPE 31 31 27 18
'ZNF83 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.563 (Fisher's exact test), Q value = 0.87

Table S9105.  Gene #841: 'ZNF83 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
ZNF83 MUTATED 3 0 0 0
ZNF83 WILD-TYPE 51 10 24 22
'CDC27 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00038 (Fisher's exact test), Q value = 0.013

Table S9106.  Gene #842: 'CDC27 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
CDC27 MUTATED 2 0 0 6
CDC27 WILD-TYPE 44 58 64 37

Figure S2544.  Get High-res Image Gene #842: 'CDC27 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'CDC27 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.528 (Fisher's exact test), Q value = 0.85

Table S9107.  Gene #842: 'CDC27 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
CDC27 MUTATED 3 2 3
CDC27 WILD-TYPE 48 81 74
'CDC27 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00284 (Fisher's exact test), Q value = 0.047

Table S9108.  Gene #842: 'CDC27 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
CDC27 MUTATED 12 1 1 1
CDC27 WILD-TYPE 166 182 100 19

Figure S2545.  Get High-res Image Gene #842: 'CDC27 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'CDC27 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.126 (Fisher's exact test), Q value = 0.39

Table S9109.  Gene #842: 'CDC27 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
CDC27 MUTATED 2 0 5
CDC27 WILD-TYPE 85 80 95
'CDC27 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.574 (Fisher's exact test), Q value = 0.88

Table S9110.  Gene #842: 'CDC27 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
CDC27 MUTATED 2 8 4
CDC27 WILD-TYPE 87 152 134
'CDC27 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.56 (Fisher's exact test), Q value = 0.87

Table S9111.  Gene #842: 'CDC27 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
CDC27 MUTATED 7 6 1
CDC27 WILD-TYPE 175 127 71
'CDC27 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.321 (Fisher's exact test), Q value = 0.65

Table S9112.  Gene #842: 'CDC27 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
CDC27 MUTATED 1 5 3 7
CDC27 WILD-TYPE 111 91 89 179
'CDC27 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.11 (Fisher's exact test), Q value = 0.37

Table S9113.  Gene #842: 'CDC27 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
CDC27 MUTATED 2 3 3 0 1 1 6
CDC27 WILD-TYPE 58 47 46 40 62 124 93
'CDC27 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.528 (Fisher's exact test), Q value = 0.85

Table S9114.  Gene #842: 'CDC27 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
CDC27 MUTATED 4 1 1 9
CDC27 WILD-TYPE 126 77 67 187
'CDC27 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.291 (Fisher's exact test), Q value = 0.62

Table S9115.  Gene #842: 'CDC27 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
CDC27 MUTATED 2 1 3 2 3 0 2 1 1
CDC27 WILD-TYPE 38 61 25 78 66 48 41 27 73
'PAAF1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.734 (Fisher's exact test), Q value = 1

Table S9116.  Gene #843: 'PAAF1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
PAAF1 MUTATED 3 3 0 0
PAAF1 WILD-TYPE 175 180 101 20
'PAAF1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.595 (Fisher's exact test), Q value = 0.9

Table S9117.  Gene #843: 'PAAF1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
PAAF1 MUTATED 1 3 2
PAAF1 WILD-TYPE 86 77 98
'PAAF1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.383 (Fisher's exact test), Q value = 0.71

Table S9118.  Gene #843: 'PAAF1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
PAAF1 MUTATED 0 4 2
PAAF1 WILD-TYPE 89 156 136
'PAAF1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0543 (Fisher's exact test), Q value = 0.25

Table S9119.  Gene #843: 'PAAF1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
PAAF1 MUTATED 1 5 0
PAAF1 WILD-TYPE 181 128 72
'PAAF1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.183 (Fisher's exact test), Q value = 0.48

Table S9120.  Gene #843: 'PAAF1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
PAAF1 MUTATED 3 2 0 1
PAAF1 WILD-TYPE 109 94 92 185
'PAAF1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.433 (Fisher's exact test), Q value = 0.76

Table S9121.  Gene #843: 'PAAF1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
PAAF1 MUTATED 1 1 1 1 1 0 1
PAAF1 WILD-TYPE 59 49 48 39 62 125 98
'PAAF1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.943 (Fisher's exact test), Q value = 1

Table S9122.  Gene #843: 'PAAF1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
PAAF1 MUTATED 2 1 1 2
PAAF1 WILD-TYPE 128 77 67 194
'PAAF1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.584 (Fisher's exact test), Q value = 0.89

Table S9123.  Gene #843: 'PAAF1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
PAAF1 MUTATED 0 1 0 0 2 2 0 0 1
PAAF1 WILD-TYPE 40 61 28 80 67 46 43 28 73
'CD244 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00792 (Fisher's exact test), Q value = 0.083

Table S9124.  Gene #844: 'CD244 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
CD244 MUTATED 0 0 0 3
CD244 WILD-TYPE 46 58 64 40

Figure S2546.  Get High-res Image Gene #844: 'CD244 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'CD244 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.25 (Fisher's exact test), Q value = 0.58

Table S9125.  Gene #844: 'CD244 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
CD244 MUTATED 2 1 0
CD244 WILD-TYPE 49 82 77
'CD244 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.515 (Fisher's exact test), Q value = 0.84

Table S9126.  Gene #844: 'CD244 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
CD244 MUTATED 4 1 2 0
CD244 WILD-TYPE 174 182 99 20
'CD244 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.204 (Fisher's exact test), Q value = 0.51

Table S9127.  Gene #844: 'CD244 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
CD244 MUTATED 3 0 1
CD244 WILD-TYPE 84 80 99
'CD244 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S9128.  Gene #844: 'CD244 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
CD244 MUTATED 1 3 3
CD244 WILD-TYPE 88 157 135
'CD244 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.774 (Fisher's exact test), Q value = 1

Table S9129.  Gene #844: 'CD244 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
CD244 MUTATED 3 2 2
CD244 WILD-TYPE 179 131 70
'CD244 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.911 (Fisher's exact test), Q value = 1

Table S9130.  Gene #844: 'CD244 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
CD244 MUTATED 1 1 1 4
CD244 WILD-TYPE 111 95 91 182
'CD244 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0911 (Fisher's exact test), Q value = 0.33

Table S9131.  Gene #844: 'CD244 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
CD244 MUTATED 0 1 0 0 2 0 4
CD244 WILD-TYPE 60 49 49 40 61 125 95
'CD244 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.29 (Fisher's exact test), Q value = 0.62

Table S9132.  Gene #844: 'CD244 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
CD244 MUTATED 0 2 1 3
CD244 WILD-TYPE 130 76 67 193
'CD244 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.777 (Fisher's exact test), Q value = 1

Table S9133.  Gene #844: 'CD244 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
CD244 MUTATED 0 1 1 0 1 1 1 0 1
CD244 WILD-TYPE 40 61 27 80 68 47 42 28 73
'CD244 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.417 (Fisher's exact test), Q value = 0.74

Table S9134.  Gene #844: 'CD244 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
CD244 MUTATED 0 2 1 0
CD244 WILD-TYPE 33 29 26 19
'CD244 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.693 (Fisher's exact test), Q value = 0.97

Table S9135.  Gene #844: 'CD244 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
CD244 MUTATED 1 0 1 1
CD244 WILD-TYPE 53 10 23 21
'UAP1L1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.374 (Fisher's exact test), Q value = 0.7

Table S9136.  Gene #845: 'UAP1L1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
UAP1L1 MUTATED 3 1 3 0
UAP1L1 WILD-TYPE 175 182 98 20
'UAP1L1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.012 (Fisher's exact test), Q value = 0.11

Table S9137.  Gene #845: 'UAP1L1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
UAP1L1 MUTATED 0 0 5
UAP1L1 WILD-TYPE 87 80 95

Figure S2547.  Get High-res Image Gene #845: 'UAP1L1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'UAP1L1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.683 (Fisher's exact test), Q value = 0.96

Table S9138.  Gene #845: 'UAP1L1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
UAP1L1 MUTATED 0 2 2
UAP1L1 WILD-TYPE 89 158 136
'UAP1L1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.828 (Fisher's exact test), Q value = 1

Table S9139.  Gene #845: 'UAP1L1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
UAP1L1 MUTATED 2 2 0
UAP1L1 WILD-TYPE 180 131 72
'UAP1L1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.567 (Fisher's exact test), Q value = 0.87

Table S9140.  Gene #845: 'UAP1L1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
UAP1L1 MUTATED 1 1 3 2
UAP1L1 WILD-TYPE 111 95 89 184
'UAP1L1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0183 (Fisher's exact test), Q value = 0.13

Table S9141.  Gene #845: 'UAP1L1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
UAP1L1 MUTATED 0 2 3 0 0 0 2
UAP1L1 WILD-TYPE 60 48 46 40 63 125 97

Figure S2548.  Get High-res Image Gene #845: 'UAP1L1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'UAP1L1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.381 (Fisher's exact test), Q value = 0.71

Table S9142.  Gene #845: 'UAP1L1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
UAP1L1 MUTATED 4 1 0 2
UAP1L1 WILD-TYPE 126 77 68 194
'UAP1L1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.442 (Fisher's exact test), Q value = 0.77

Table S9143.  Gene #845: 'UAP1L1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
UAP1L1 MUTATED 0 2 0 2 3 0 0 0 0
UAP1L1 WILD-TYPE 40 60 28 78 66 48 43 28 74
'UAP1L1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.78 (Fisher's exact test), Q value = 1

Table S9144.  Gene #845: 'UAP1L1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
UAP1L1 MUTATED 1 0 1 1
UAP1L1 WILD-TYPE 32 31 26 18
'UAP1L1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S9145.  Gene #845: 'UAP1L1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
UAP1L1 MUTATED 2 0 1 0
UAP1L1 WILD-TYPE 52 10 23 22
'FAM189B MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.118 (Fisher's exact test), Q value = 0.38

Table S9146.  Gene #846: 'FAM189B MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
FAM189B MUTATED 2 0 0 1
FAM189B WILD-TYPE 44 58 64 42
'FAM189B MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0134 (Fisher's exact test), Q value = 0.11

Table S9147.  Gene #846: 'FAM189B MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
FAM189B MUTATED 3 0 0
FAM189B WILD-TYPE 48 83 77

Figure S2549.  Get High-res Image Gene #846: 'FAM189B MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'FAM189B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0107 (Fisher's exact test), Q value = 0.099

Table S9148.  Gene #846: 'FAM189B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
FAM189B MUTATED 10 1 1 1
FAM189B WILD-TYPE 168 182 100 19

Figure S2550.  Get High-res Image Gene #846: 'FAM189B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'FAM189B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.257 (Fisher's exact test), Q value = 0.58

Table S9149.  Gene #846: 'FAM189B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
FAM189B MUTATED 3 1 6
FAM189B WILD-TYPE 84 79 94
'FAM189B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.797 (Fisher's exact test), Q value = 1

Table S9150.  Gene #846: 'FAM189B MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
FAM189B MUTATED 2 4 5
FAM189B WILD-TYPE 87 156 133
'FAM189B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.283 (Fisher's exact test), Q value = 0.61

Table S9151.  Gene #846: 'FAM189B MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
FAM189B MUTATED 6 5 0
FAM189B WILD-TYPE 176 128 72
'FAM189B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.127 (Fisher's exact test), Q value = 0.4

Table S9152.  Gene #846: 'FAM189B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
FAM189B MUTATED 1 4 5 3
FAM189B WILD-TYPE 111 92 87 183
'FAM189B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 9e-05 (Fisher's exact test), Q value = 0.0048

Table S9153.  Gene #846: 'FAM189B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
FAM189B MUTATED 1 0 7 0 1 0 4
FAM189B WILD-TYPE 59 50 42 40 62 125 95

Figure S2551.  Get High-res Image Gene #846: 'FAM189B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'FAM189B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.456 (Fisher's exact test), Q value = 0.78

Table S9154.  Gene #846: 'FAM189B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
FAM189B MUTATED 5 3 1 3
FAM189B WILD-TYPE 125 75 67 193
'FAM189B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0155 (Fisher's exact test), Q value = 0.12

Table S9155.  Gene #846: 'FAM189B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
FAM189B MUTATED 1 3 0 0 6 0 1 1 0
FAM189B WILD-TYPE 39 59 28 80 63 48 42 27 74

Figure S2552.  Get High-res Image Gene #846: 'FAM189B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'FAM189B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.872 (Fisher's exact test), Q value = 1

Table S9156.  Gene #846: 'FAM189B MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
FAM189B MUTATED 1 1 0 1
FAM189B WILD-TYPE 32 30 27 18
'FAM189B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S9157.  Gene #846: 'FAM189B MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
FAM189B MUTATED 2 0 1 0
FAM189B WILD-TYPE 52 10 23 22
'MIA3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.071 (Fisher's exact test), Q value = 0.29

Table S9158.  Gene #847: 'MIA3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
MIA3 MUTATED 3 0 2 4
MIA3 WILD-TYPE 43 58 62 39
'MIA3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.828 (Fisher's exact test), Q value = 1

Table S9159.  Gene #847: 'MIA3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
MIA3 MUTATED 3 3 3
MIA3 WILD-TYPE 48 80 74
'MIA3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00036 (Fisher's exact test), Q value = 0.012

Table S9160.  Gene #847: 'MIA3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
MIA3 MUTATED 17 2 1 1
MIA3 WILD-TYPE 161 181 100 19

Figure S2553.  Get High-res Image Gene #847: 'MIA3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'MIA3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.238 (Fisher's exact test), Q value = 0.56

Table S9161.  Gene #847: 'MIA3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
MIA3 MUTATED 5 1 6
MIA3 WILD-TYPE 82 79 94
'MIA3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.271 (Fisher's exact test), Q value = 0.6

Table S9162.  Gene #847: 'MIA3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
MIA3 MUTATED 1 7 7
MIA3 WILD-TYPE 88 153 131
'MIA3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.886 (Fisher's exact test), Q value = 1

Table S9163.  Gene #847: 'MIA3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
MIA3 MUTATED 7 6 2
MIA3 WILD-TYPE 175 127 70
'MIA3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0602 (Fisher's exact test), Q value = 0.27

Table S9164.  Gene #847: 'MIA3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
MIA3 MUTATED 1 8 3 9
MIA3 WILD-TYPE 111 88 89 177
'MIA3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0285 (Fisher's exact test), Q value = 0.17

Table S9165.  Gene #847: 'MIA3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
MIA3 MUTATED 2 2 7 0 1 3 6
MIA3 WILD-TYPE 58 48 42 40 62 122 93

Figure S2554.  Get High-res Image Gene #847: 'MIA3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'MIA3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.836 (Fisher's exact test), Q value = 1

Table S9166.  Gene #847: 'MIA3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
MIA3 MUTATED 6 2 2 10
MIA3 WILD-TYPE 124 76 66 186
'MIA3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.118 (Fisher's exact test), Q value = 0.38

Table S9167.  Gene #847: 'MIA3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
MIA3 MUTATED 0 4 3 1 6 1 1 0 4
MIA3 WILD-TYPE 40 58 25 79 63 47 42 28 70
'MIA3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 9e-05 (Fisher's exact test), Q value = 0.0048

Table S9168.  Gene #847: 'MIA3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
MIA3 MUTATED 0 0 0 5
MIA3 WILD-TYPE 33 31 27 14

Figure S2555.  Get High-res Image Gene #847: 'MIA3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'MIA3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.189 (Fisher's exact test), Q value = 0.49

Table S9169.  Gene #847: 'MIA3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
MIA3 MUTATED 2 0 3 0
MIA3 WILD-TYPE 52 10 21 22
'EFHC2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.022 (Fisher's exact test), Q value = 0.15

Table S9170.  Gene #848: 'EFHC2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
EFHC2 MUTATED 2 0 0 3
EFHC2 WILD-TYPE 44 58 64 40

Figure S2556.  Get High-res Image Gene #848: 'EFHC2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'EFHC2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0445 (Fisher's exact test), Q value = 0.22

Table S9171.  Gene #848: 'EFHC2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
EFHC2 MUTATED 3 0 2
EFHC2 WILD-TYPE 48 83 75

Figure S2557.  Get High-res Image Gene #848: 'EFHC2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'EFHC2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0571 (Fisher's exact test), Q value = 0.26

Table S9172.  Gene #848: 'EFHC2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
EFHC2 MUTATED 12 3 2 0
EFHC2 WILD-TYPE 166 180 99 20
'EFHC2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.936 (Fisher's exact test), Q value = 1

Table S9173.  Gene #848: 'EFHC2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
EFHC2 MUTATED 4 3 5
EFHC2 WILD-TYPE 83 77 95
'EFHC2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.166 (Fisher's exact test), Q value = 0.46

Table S9174.  Gene #848: 'EFHC2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
EFHC2 MUTATED 1 4 8
EFHC2 WILD-TYPE 88 156 130
'EFHC2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.934 (Fisher's exact test), Q value = 1

Table S9175.  Gene #848: 'EFHC2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
EFHC2 MUTATED 7 4 2
EFHC2 WILD-TYPE 175 129 70
'EFHC2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.623 (Fisher's exact test), Q value = 0.92

Table S9176.  Gene #848: 'EFHC2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
EFHC2 MUTATED 3 5 4 5
EFHC2 WILD-TYPE 109 91 88 181
'EFHC2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00923 (Fisher's exact test), Q value = 0.09

Table S9177.  Gene #848: 'EFHC2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
EFHC2 MUTATED 3 3 5 0 2 0 4
EFHC2 WILD-TYPE 57 47 44 40 61 125 95

Figure S2558.  Get High-res Image Gene #848: 'EFHC2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'EFHC2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.548 (Fisher's exact test), Q value = 0.87

Table S9178.  Gene #848: 'EFHC2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
EFHC2 MUTATED 7 2 1 6
EFHC2 WILD-TYPE 123 76 67 190
'EFHC2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0657 (Fisher's exact test), Q value = 0.28

Table S9179.  Gene #848: 'EFHC2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
EFHC2 MUTATED 3 4 2 0 4 1 0 1 1
EFHC2 WILD-TYPE 37 58 26 80 65 47 43 27 73
'EFHC2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.139 (Fisher's exact test), Q value = 0.41

Table S9180.  Gene #848: 'EFHC2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
EFHC2 MUTATED 1 0 0 2
EFHC2 WILD-TYPE 32 31 27 17
'EFHC2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.563 (Fisher's exact test), Q value = 0.87

Table S9181.  Gene #848: 'EFHC2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
EFHC2 MUTATED 3 0 0 0
EFHC2 WILD-TYPE 51 10 24 22
'PALLD MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0152 (Fisher's exact test), Q value = 0.12

Table S9182.  Gene #849: 'PALLD MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
PALLD MUTATED 1 0 0 3
PALLD WILD-TYPE 45 58 64 40

Figure S2559.  Get High-res Image Gene #849: 'PALLD MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'PALLD MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.178 (Fisher's exact test), Q value = 0.48

Table S9183.  Gene #849: 'PALLD MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
PALLD MUTATED 1 0 3
PALLD WILD-TYPE 50 83 74
'PALLD MUTATION STATUS' versus 'CN_CNMF'

P value = 0.227 (Fisher's exact test), Q value = 0.54

Table S9184.  Gene #849: 'PALLD MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
PALLD MUTATED 8 2 2 0
PALLD WILD-TYPE 170 181 99 20
'PALLD MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S9185.  Gene #849: 'PALLD MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
PALLD MUTATED 3 2 3
PALLD WILD-TYPE 84 78 97
'PALLD MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0821 (Fisher's exact test), Q value = 0.31

Table S9186.  Gene #849: 'PALLD MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
PALLD MUTATED 1 1 6
PALLD WILD-TYPE 88 159 132
'PALLD MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.133 (Fisher's exact test), Q value = 0.41

Table S9187.  Gene #849: 'PALLD MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
PALLD MUTATED 7 1 0
PALLD WILD-TYPE 175 132 72
'PALLD MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.732 (Fisher's exact test), Q value = 1

Table S9188.  Gene #849: 'PALLD MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
PALLD MUTATED 3 3 3 3
PALLD WILD-TYPE 109 93 89 183
'PALLD MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0102 (Fisher's exact test), Q value = 0.097

Table S9189.  Gene #849: 'PALLD MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
PALLD MUTATED 2 1 5 0 1 0 3
PALLD WILD-TYPE 58 49 44 40 62 125 96

Figure S2560.  Get High-res Image Gene #849: 'PALLD MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'PALLD MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.599 (Fisher's exact test), Q value = 0.9

Table S9190.  Gene #849: 'PALLD MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
PALLD MUTATED 4 2 0 6
PALLD WILD-TYPE 126 76 68 190
'PALLD MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0694 (Fisher's exact test), Q value = 0.28

Table S9191.  Gene #849: 'PALLD MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
PALLD MUTATED 0 2 2 1 5 1 0 1 0
PALLD WILD-TYPE 40 60 26 79 64 47 43 27 74
'PALLD MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00448 (Fisher's exact test), Q value = 0.061

Table S9192.  Gene #849: 'PALLD MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
PALLD MUTATED 0 0 0 3
PALLD WILD-TYPE 33 31 27 16

Figure S2561.  Get High-res Image Gene #849: 'PALLD MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'PALLD MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.694 (Fisher's exact test), Q value = 0.97

Table S9193.  Gene #849: 'PALLD MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
PALLD MUTATED 1 0 1 1
PALLD WILD-TYPE 53 10 23 21
'C1QL3 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S9194.  Gene #850: 'C1QL3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
C1QL3 MUTATED 1 2 1 0
C1QL3 WILD-TYPE 177 181 100 20
'C1QL3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.466 (Fisher's exact test), Q value = 0.79

Table S9195.  Gene #850: 'C1QL3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
C1QL3 MUTATED 0 2 2
C1QL3 WILD-TYPE 87 78 98
'C1QL3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.553 (Fisher's exact test), Q value = 0.87

Table S9196.  Gene #850: 'C1QL3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
C1QL3 MUTATED 0 3 1
C1QL3 WILD-TYPE 89 157 137
'C1QL3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.829 (Fisher's exact test), Q value = 1

Table S9197.  Gene #850: 'C1QL3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
C1QL3 MUTATED 2 2 0
C1QL3 WILD-TYPE 180 131 72
'C1QL3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.205 (Fisher's exact test), Q value = 0.51

Table S9198.  Gene #850: 'C1QL3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
C1QL3 MUTATED 2 1 1 0
C1QL3 WILD-TYPE 110 95 91 186
'C1QL3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0909 (Fisher's exact test), Q value = 0.33

Table S9199.  Gene #850: 'C1QL3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
C1QL3 MUTATED 2 0 1 0 1 0 0
C1QL3 WILD-TYPE 58 50 48 40 62 125 99
'C1QL3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0793 (Fisher's exact test), Q value = 0.3

Table S9200.  Gene #850: 'C1QL3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
C1QL3 MUTATED 2 2 0 0
C1QL3 WILD-TYPE 128 76 68 196
'C1QL3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.155 (Fisher's exact test), Q value = 0.44

Table S9201.  Gene #850: 'C1QL3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
C1QL3 MUTATED 1 1 0 0 0 2 0 0 0
C1QL3 WILD-TYPE 39 61 28 80 69 46 43 28 74
'SFRS18 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0261 (Fisher's exact test), Q value = 0.16

Table S9202.  Gene #851: 'SFRS18 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
SFRS18 MUTATED 3 0 0 2
SFRS18 WILD-TYPE 43 58 64 41

Figure S2562.  Get High-res Image Gene #851: 'SFRS18 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'SFRS18 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.739 (Fisher's exact test), Q value = 1

Table S9203.  Gene #851: 'SFRS18 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
SFRS18 MUTATED 2 2 1
SFRS18 WILD-TYPE 49 81 76
'SFRS18 MUTATION STATUS' versus 'CN_CNMF'

P value = 3e-05 (Fisher's exact test), Q value = 0.0022

Table S9204.  Gene #851: 'SFRS18 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
SFRS18 MUTATED 13 0 0 0
SFRS18 WILD-TYPE 165 183 101 20

Figure S2563.  Get High-res Image Gene #851: 'SFRS18 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'SFRS18 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0705 (Fisher's exact test), Q value = 0.29

Table S9205.  Gene #851: 'SFRS18 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
SFRS18 MUTATED 2 0 6
SFRS18 WILD-TYPE 85 80 94
'SFRS18 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.204 (Fisher's exact test), Q value = 0.51

Table S9206.  Gene #851: 'SFRS18 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
SFRS18 MUTATED 0 5 5
SFRS18 WILD-TYPE 89 155 133
'SFRS18 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.299 (Fisher's exact test), Q value = 0.63

Table S9207.  Gene #851: 'SFRS18 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
SFRS18 MUTATED 3 6 1
SFRS18 WILD-TYPE 179 127 71
'SFRS18 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0839 (Fisher's exact test), Q value = 0.31

Table S9208.  Gene #851: 'SFRS18 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
SFRS18 MUTATED 0 5 3 5
SFRS18 WILD-TYPE 112 91 89 181
'SFRS18 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0132 (Fisher's exact test), Q value = 0.11

Table S9209.  Gene #851: 'SFRS18 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
SFRS18 MUTATED 1 1 6 0 1 1 3
SFRS18 WILD-TYPE 59 49 43 40 62 124 96

Figure S2564.  Get High-res Image Gene #851: 'SFRS18 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'SFRS18 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.498 (Fisher's exact test), Q value = 0.82

Table S9210.  Gene #851: 'SFRS18 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
SFRS18 MUTATED 5 2 0 5
SFRS18 WILD-TYPE 125 76 68 191
'SFRS18 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0608 (Fisher's exact test), Q value = 0.27

Table S9211.  Gene #851: 'SFRS18 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
SFRS18 MUTATED 0 3 1 1 6 0 0 0 1
SFRS18 WILD-TYPE 40 59 27 79 63 48 43 28 73
'SFRS18 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00449 (Fisher's exact test), Q value = 0.061

Table S9212.  Gene #851: 'SFRS18 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
SFRS18 MUTATED 0 0 0 3
SFRS18 WILD-TYPE 33 31 27 16

Figure S2565.  Get High-res Image Gene #851: 'SFRS18 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'SFRS18 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.448 (Fisher's exact test), Q value = 0.77

Table S9213.  Gene #851: 'SFRS18 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
SFRS18 MUTATED 1 0 2 0
SFRS18 WILD-TYPE 53 10 22 22
'TAT MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00602 (Fisher's exact test), Q value = 0.071

Table S9214.  Gene #852: 'TAT MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
TAT MUTATED 4 0 0 1
TAT WILD-TYPE 42 58 64 42

Figure S2566.  Get High-res Image Gene #852: 'TAT MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'TAT MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.253 (Fisher's exact test), Q value = 0.58

Table S9215.  Gene #852: 'TAT MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
TAT MUTATED 3 1 1
TAT WILD-TYPE 48 82 76
'TAT MUTATION STATUS' versus 'CN_CNMF'

P value = 8e-05 (Fisher's exact test), Q value = 0.0045

Table S9216.  Gene #852: 'TAT MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
TAT MUTATED 14 0 1 0
TAT WILD-TYPE 164 183 100 20

Figure S2567.  Get High-res Image Gene #852: 'TAT MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'TAT MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.367 (Fisher's exact test), Q value = 0.7

Table S9217.  Gene #852: 'TAT MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
TAT MUTATED 4 1 5
TAT WILD-TYPE 83 79 95
'TAT MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.428 (Fisher's exact test), Q value = 0.76

Table S9218.  Gene #852: 'TAT MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
TAT MUTATED 2 3 6
TAT WILD-TYPE 87 157 132
'TAT MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.467 (Fisher's exact test), Q value = 0.79

Table S9219.  Gene #852: 'TAT MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
TAT MUTATED 6 2 3
TAT WILD-TYPE 176 131 69
'TAT MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.248 (Fisher's exact test), Q value = 0.57

Table S9220.  Gene #852: 'TAT MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
TAT MUTATED 1 5 4 5
TAT WILD-TYPE 111 91 88 181
'TAT MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0777 (Fisher's exact test), Q value = 0.3

Table S9221.  Gene #852: 'TAT MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
TAT MUTATED 2 1 5 2 1 1 3
TAT WILD-TYPE 58 49 44 38 62 124 96
'TAT MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.291 (Fisher's exact test), Q value = 0.62

Table S9222.  Gene #852: 'TAT MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
TAT MUTATED 6 3 0 5
TAT WILD-TYPE 124 75 68 191
'TAT MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.205 (Fisher's exact test), Q value = 0.51

Table S9223.  Gene #852: 'TAT MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
TAT MUTATED 2 3 1 2 5 1 0 0 0
TAT WILD-TYPE 38 59 27 78 64 47 43 28 74
'TAT MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00466 (Fisher's exact test), Q value = 0.062

Table S9224.  Gene #852: 'TAT MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
TAT MUTATED 0 0 0 3
TAT WILD-TYPE 33 31 27 16

Figure S2568.  Get High-res Image Gene #852: 'TAT MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'TAT MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S9225.  Gene #852: 'TAT MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
TAT MUTATED 2 0 1 0
TAT WILD-TYPE 52 10 23 22
'LRRC6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.193 (Fisher's exact test), Q value = 0.5

Table S9226.  Gene #853: 'LRRC6 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
LRRC6 MUTATED 1 2 0 1
LRRC6 WILD-TYPE 177 181 101 19
'LRRC6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.294 (Fisher's exact test), Q value = 0.62

Table S9227.  Gene #853: 'LRRC6 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
LRRC6 MUTATED 2 1 0
LRRC6 WILD-TYPE 85 79 100
'LRRC6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.612 (Fisher's exact test), Q value = 0.91

Table S9228.  Gene #853: 'LRRC6 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
LRRC6 MUTATED 0 1 2
LRRC6 WILD-TYPE 89 159 136
'LRRC6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.298 (Fisher's exact test), Q value = 0.63

Table S9229.  Gene #853: 'LRRC6 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
LRRC6 MUTATED 3 0 0
LRRC6 WILD-TYPE 179 133 72
'LRRC6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.378 (Fisher's exact test), Q value = 0.71

Table S9230.  Gene #853: 'LRRC6 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
LRRC6 MUTATED 1 0 2 1
LRRC6 WILD-TYPE 111 96 90 185
'LRRC6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.279 (Fisher's exact test), Q value = 0.61

Table S9231.  Gene #853: 'LRRC6 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
LRRC6 MUTATED 1 0 0 0 2 0 1
LRRC6 WILD-TYPE 59 50 49 40 61 125 98
'LRRC6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.599 (Fisher's exact test), Q value = 0.9

Table S9232.  Gene #853: 'LRRC6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
LRRC6 MUTATED 2 1 0 1
LRRC6 WILD-TYPE 128 77 68 195
'LRRC6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0763 (Fisher's exact test), Q value = 0.3

Table S9233.  Gene #853: 'LRRC6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
LRRC6 MUTATED 0 1 2 1 0 0 0 0 0
LRRC6 WILD-TYPE 40 61 26 79 69 48 43 28 74
'LRRC6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.556 (Fisher's exact test), Q value = 0.87

Table S9234.  Gene #853: 'LRRC6 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
LRRC6 MUTATED 1 2 0 0
LRRC6 WILD-TYPE 32 29 27 19
'LRRC6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S9235.  Gene #853: 'LRRC6 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
LRRC6 MUTATED 2 0 1 0
LRRC6 WILD-TYPE 52 10 23 22
'ADAM18 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.431 (Fisher's exact test), Q value = 0.76

Table S9236.  Gene #854: 'ADAM18 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ADAM18 MUTATED 3 1 1 2
ADAM18 WILD-TYPE 43 57 63 41
'ADAM18 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.431 (Fisher's exact test), Q value = 0.76

Table S9237.  Gene #854: 'ADAM18 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ADAM18 MUTATED 3 3 1
ADAM18 WILD-TYPE 48 80 76
'ADAM18 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.089 (Fisher's exact test), Q value = 0.32

Table S9238.  Gene #854: 'ADAM18 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ADAM18 MUTATED 14 5 3 0
ADAM18 WILD-TYPE 164 178 98 20
'ADAM18 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S9239.  Gene #854: 'ADAM18 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ADAM18 MUTATED 5 5 6
ADAM18 WILD-TYPE 82 75 94
'ADAM18 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.923 (Fisher's exact test), Q value = 1

Table S9240.  Gene #854: 'ADAM18 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ADAM18 MUTATED 4 10 8
ADAM18 WILD-TYPE 85 150 130
'ADAM18 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.773 (Fisher's exact test), Q value = 1

Table S9241.  Gene #854: 'ADAM18 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ADAM18 MUTATED 9 9 4
ADAM18 WILD-TYPE 173 124 68
'ADAM18 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.368 (Fisher's exact test), Q value = 0.7

Table S9242.  Gene #854: 'ADAM18 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ADAM18 MUTATED 4 8 4 7
ADAM18 WILD-TYPE 108 88 88 179
'ADAM18 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.396 (Fisher's exact test), Q value = 0.72

Table S9243.  Gene #854: 'ADAM18 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ADAM18 MUTATED 4 2 4 2 4 2 5
ADAM18 WILD-TYPE 56 48 45 38 59 123 94
'ADAM18 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.894 (Fisher's exact test), Q value = 1

Table S9244.  Gene #854: 'ADAM18 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ADAM18 MUTATED 8 3 3 9
ADAM18 WILD-TYPE 122 75 65 187
'ADAM18 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0148 (Fisher's exact test), Q value = 0.12

Table S9245.  Gene #854: 'ADAM18 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ADAM18 MUTATED 1 3 4 3 9 0 1 0 2
ADAM18 WILD-TYPE 39 59 24 77 60 48 42 28 72

Figure S2569.  Get High-res Image Gene #854: 'ADAM18 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'MRAS MUTATION STATUS' versus 'CN_CNMF'

P value = 0.335 (Fisher's exact test), Q value = 0.66

Table S9246.  Gene #855: 'MRAS MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
MRAS MUTATED 3 0 1 0
MRAS WILD-TYPE 175 183 100 20
'MRAS MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S9247.  Gene #855: 'MRAS MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
MRAS MUTATED 1 1 1
MRAS WILD-TYPE 86 79 99
'MRAS MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.555 (Fisher's exact test), Q value = 0.87

Table S9248.  Gene #855: 'MRAS MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
MRAS MUTATED 0 3 1
MRAS WILD-TYPE 89 157 137
'MRAS MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.252 (Fisher's exact test), Q value = 0.58

Table S9249.  Gene #855: 'MRAS MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
MRAS MUTATED 1 1 2
MRAS WILD-TYPE 181 132 70
'MRAS MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.644 (Fisher's exact test), Q value = 0.93

Table S9250.  Gene #855: 'MRAS MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
MRAS MUTATED 2 1 0 1
MRAS WILD-TYPE 110 95 92 185
'MRAS MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.487 (Fisher's exact test), Q value = 0.81

Table S9251.  Gene #855: 'MRAS MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
MRAS MUTATED 1 0 1 0 1 0 1
MRAS WILD-TYPE 59 50 48 40 62 125 98
'MRAS MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.304 (Fisher's exact test), Q value = 0.63

Table S9252.  Gene #855: 'MRAS MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
MRAS MUTATED 3 0 0 1
MRAS WILD-TYPE 127 78 68 195
'MRAS MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.315 (Fisher's exact test), Q value = 0.64

Table S9253.  Gene #855: 'MRAS MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
MRAS MUTATED 1 0 0 0 2 1 0 0 0
MRAS WILD-TYPE 39 62 28 80 67 47 43 28 74
'ADNP2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0159 (Fisher's exact test), Q value = 0.13

Table S9254.  Gene #856: 'ADNP2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ADNP2 MUTATED 1 0 0 3
ADNP2 WILD-TYPE 45 58 64 40

Figure S2570.  Get High-res Image Gene #856: 'ADNP2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'ADNP2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.175 (Fisher's exact test), Q value = 0.47

Table S9255.  Gene #856: 'ADNP2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ADNP2 MUTATED 2 0 2
ADNP2 WILD-TYPE 49 83 75
'ADNP2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0153 (Fisher's exact test), Q value = 0.12

Table S9256.  Gene #856: 'ADNP2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ADNP2 MUTATED 13 3 1 0
ADNP2 WILD-TYPE 165 180 100 20

Figure S2571.  Get High-res Image Gene #856: 'ADNP2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ADNP2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00893 (Fisher's exact test), Q value = 0.088

Table S9257.  Gene #856: 'ADNP2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ADNP2 MUTATED 3 0 9
ADNP2 WILD-TYPE 84 80 91

Figure S2572.  Get High-res Image Gene #856: 'ADNP2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'ADNP2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.413 (Fisher's exact test), Q value = 0.74

Table S9258.  Gene #856: 'ADNP2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ADNP2 MUTATED 2 9 4
ADNP2 WILD-TYPE 87 151 134
'ADNP2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.611 (Fisher's exact test), Q value = 0.91

Table S9259.  Gene #856: 'ADNP2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ADNP2 MUTATED 6 7 2
ADNP2 WILD-TYPE 176 126 70
'ADNP2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00237 (Fisher's exact test), Q value = 0.042

Table S9260.  Gene #856: 'ADNP2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ADNP2 MUTATED 0 9 2 6
ADNP2 WILD-TYPE 112 87 90 180

Figure S2573.  Get High-res Image Gene #856: 'ADNP2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'ADNP2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00045 (Fisher's exact test), Q value = 0.014

Table S9261.  Gene #856: 'ADNP2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ADNP2 MUTATED 1 5 5 1 0 0 5
ADNP2 WILD-TYPE 59 45 44 39 63 125 94

Figure S2574.  Get High-res Image Gene #856: 'ADNP2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ADNP2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.3 (Fisher's exact test), Q value = 0.63

Table S9262.  Gene #856: 'ADNP2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ADNP2 MUTATED 8 2 1 5
ADNP2 WILD-TYPE 122 76 67 191
'ADNP2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00187 (Fisher's exact test), Q value = 0.036

Table S9263.  Gene #856: 'ADNP2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ADNP2 MUTATED 5 0 2 0 4 0 3 0 2
ADNP2 WILD-TYPE 35 62 26 80 65 48 40 28 72

Figure S2575.  Get High-res Image Gene #856: 'ADNP2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'ADNP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.135 (Fisher's exact test), Q value = 0.41

Table S9264.  Gene #856: 'ADNP2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
ADNP2 MUTATED 1 0 0 2
ADNP2 WILD-TYPE 32 31 27 17
'ADNP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.562 (Fisher's exact test), Q value = 0.87

Table S9265.  Gene #856: 'ADNP2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
ADNP2 MUTATED 3 0 0 0
ADNP2 WILD-TYPE 51 10 24 22
'SLC22A16 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0742 (Fisher's exact test), Q value = 0.29

Table S9266.  Gene #857: 'SLC22A16 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
SLC22A16 MUTATED 2 0 0 2
SLC22A16 WILD-TYPE 44 58 64 41
'SLC22A16 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.833 (Fisher's exact test), Q value = 1

Table S9267.  Gene #857: 'SLC22A16 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
SLC22A16 MUTATED 1 1 2
SLC22A16 WILD-TYPE 50 82 75
'SLC22A16 MUTATION STATUS' versus 'CN_CNMF'

P value = 7e-05 (Fisher's exact test), Q value = 0.0041

Table S9268.  Gene #857: 'SLC22A16 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
SLC22A16 MUTATED 14 1 0 0
SLC22A16 WILD-TYPE 164 182 101 20

Figure S2576.  Get High-res Image Gene #857: 'SLC22A16 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'SLC22A16 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0665 (Fisher's exact test), Q value = 0.28

Table S9269.  Gene #857: 'SLC22A16 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
SLC22A16 MUTATED 4 0 6
SLC22A16 WILD-TYPE 83 80 94
'SLC22A16 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.425 (Fisher's exact test), Q value = 0.75

Table S9270.  Gene #857: 'SLC22A16 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
SLC22A16 MUTATED 2 3 6
SLC22A16 WILD-TYPE 87 157 132
'SLC22A16 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.781 (Fisher's exact test), Q value = 1

Table S9271.  Gene #857: 'SLC22A16 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
SLC22A16 MUTATED 5 5 1
SLC22A16 WILD-TYPE 177 128 71
'SLC22A16 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0325 (Fisher's exact test), Q value = 0.18

Table S9272.  Gene #857: 'SLC22A16 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
SLC22A16 MUTATED 0 6 4 5
SLC22A16 WILD-TYPE 112 90 88 181

Figure S2577.  Get High-res Image Gene #857: 'SLC22A16 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'SLC22A16 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 4e-05 (Fisher's exact test), Q value = 0.0027

Table S9273.  Gene #857: 'SLC22A16 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
SLC22A16 MUTATED 1 0 9 0 0 2 3
SLC22A16 WILD-TYPE 59 50 40 40 63 123 96

Figure S2578.  Get High-res Image Gene #857: 'SLC22A16 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'SLC22A16 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.889 (Fisher's exact test), Q value = 1

Table S9274.  Gene #857: 'SLC22A16 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
SLC22A16 MUTATED 4 3 1 6
SLC22A16 WILD-TYPE 126 75 67 190
'SLC22A16 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.174 (Fisher's exact test), Q value = 0.47

Table S9275.  Gene #857: 'SLC22A16 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
SLC22A16 MUTATED 1 3 1 2 6 0 0 0 1
SLC22A16 WILD-TYPE 39 59 27 78 63 48 43 28 73
'SLC22A16 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.254 (Fisher's exact test), Q value = 0.58

Table S9276.  Gene #857: 'SLC22A16 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
SLC22A16 MUTATED 2 0 0 1
SLC22A16 WILD-TYPE 31 31 27 18
'SLC22A16 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.563 (Fisher's exact test), Q value = 0.87

Table S9277.  Gene #857: 'SLC22A16 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
SLC22A16 MUTATED 3 0 0 0
SLC22A16 WILD-TYPE 51 10 24 22
'GSS MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0653 (Fisher's exact test), Q value = 0.28

Table S9278.  Gene #858: 'GSS MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
GSS MUTATED 1 0 0 2
GSS WILD-TYPE 45 58 64 41
'GSS MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.252 (Fisher's exact test), Q value = 0.58

Table S9279.  Gene #858: 'GSS MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
GSS MUTATED 2 1 0
GSS WILD-TYPE 49 82 77
'GSS MUTATION STATUS' versus 'CN_CNMF'

P value = 0.099 (Fisher's exact test), Q value = 0.35

Table S9280.  Gene #858: 'GSS MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
GSS MUTATED 6 1 1 1
GSS WILD-TYPE 172 182 100 19
'GSS MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.328 (Fisher's exact test), Q value = 0.66

Table S9281.  Gene #858: 'GSS MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
GSS MUTATED 3 0 2
GSS WILD-TYPE 84 80 98
'GSS MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.616 (Fisher's exact test), Q value = 0.92

Table S9282.  Gene #858: 'GSS MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
GSS MUTATED 1 2 4
GSS WILD-TYPE 88 158 134
'GSS MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.31 (Fisher's exact test), Q value = 0.64

Table S9283.  Gene #858: 'GSS MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
GSS MUTATED 3 4 0
GSS WILD-TYPE 179 129 72
'GSS MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.67 (Fisher's exact test), Q value = 0.95

Table S9284.  Gene #858: 'GSS MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
GSS MUTATED 1 3 1 4
GSS WILD-TYPE 111 93 91 182
'GSS MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0367 (Fisher's exact test), Q value = 0.2

Table S9285.  Gene #858: 'GSS MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
GSS MUTATED 1 0 2 2 0 0 4
GSS WILD-TYPE 59 50 47 38 63 125 95

Figure S2579.  Get High-res Image Gene #858: 'GSS MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'GSS MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.383 (Fisher's exact test), Q value = 0.71

Table S9286.  Gene #858: 'GSS MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
GSS MUTATED 4 1 0 2
GSS WILD-TYPE 126 77 68 194
'GSS MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.737 (Fisher's exact test), Q value = 1

Table S9287.  Gene #858: 'GSS MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
GSS MUTATED 1 1 1 1 2 1 0 0 0
GSS WILD-TYPE 39 61 27 79 67 47 43 28 74
'IGF2R MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00035 (Fisher's exact test), Q value = 0.012

Table S9288.  Gene #859: 'IGF2R MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
IGF2R MUTATED 7 0 1 6
IGF2R WILD-TYPE 39 58 63 37

Figure S2580.  Get High-res Image Gene #859: 'IGF2R MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'IGF2R MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00431 (Fisher's exact test), Q value = 0.06

Table S9289.  Gene #859: 'IGF2R MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
IGF2R MUTATED 9 3 2
IGF2R WILD-TYPE 42 80 75

Figure S2581.  Get High-res Image Gene #859: 'IGF2R MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'IGF2R MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S9290.  Gene #859: 'IGF2R MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
IGF2R MUTATED 32 1 8 0
IGF2R WILD-TYPE 146 182 93 20

Figure S2582.  Get High-res Image Gene #859: 'IGF2R MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'IGF2R MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00406 (Fisher's exact test), Q value = 0.058

Table S9291.  Gene #859: 'IGF2R MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
IGF2R MUTATED 8 2 17
IGF2R WILD-TYPE 79 78 83

Figure S2583.  Get High-res Image Gene #859: 'IGF2R MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'IGF2R MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0474 (Fisher's exact test), Q value = 0.23

Table S9292.  Gene #859: 'IGF2R MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
IGF2R MUTATED 3 11 17
IGF2R WILD-TYPE 86 149 121

Figure S2584.  Get High-res Image Gene #859: 'IGF2R MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'IGF2R MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.941 (Fisher's exact test), Q value = 1

Table S9293.  Gene #859: 'IGF2R MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
IGF2R MUTATED 14 11 6
IGF2R WILD-TYPE 168 122 66
'IGF2R MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0119 (Fisher's exact test), Q value = 0.11

Table S9294.  Gene #859: 'IGF2R MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
IGF2R MUTATED 3 14 10 14
IGF2R WILD-TYPE 109 82 82 172

Figure S2585.  Get High-res Image Gene #859: 'IGF2R MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'IGF2R MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S9295.  Gene #859: 'IGF2R MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
IGF2R MUTATED 4 4 15 1 1 2 14
IGF2R WILD-TYPE 56 46 34 39 62 123 85

Figure S2586.  Get High-res Image Gene #859: 'IGF2R MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'IGF2R MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.224 (Fisher's exact test), Q value = 0.54

Table S9296.  Gene #859: 'IGF2R MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
IGF2R MUTATED 9 8 2 20
IGF2R WILD-TYPE 121 70 66 176
'IGF2R MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S9297.  Gene #859: 'IGF2R MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
IGF2R MUTATED 0 7 4 6 17 0 2 1 2
IGF2R WILD-TYPE 40 55 24 74 52 48 41 27 72

Figure S2587.  Get High-res Image Gene #859: 'IGF2R MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'IGF2R MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0691 (Fisher's exact test), Q value = 0.28

Table S9298.  Gene #859: 'IGF2R MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
IGF2R MUTATED 1 1 1 4
IGF2R WILD-TYPE 32 30 26 15
'IGF2R MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.641 (Fisher's exact test), Q value = 0.93

Table S9299.  Gene #859: 'IGF2R MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
IGF2R MUTATED 3 0 3 1
IGF2R WILD-TYPE 51 10 21 21
'OR51A4 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0644 (Fisher's exact test), Q value = 0.28

Table S9300.  Gene #860: 'OR51A4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
OR51A4 MUTATED 1 0 0 2
OR51A4 WILD-TYPE 45 58 64 41
'OR51A4 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.253 (Fisher's exact test), Q value = 0.58

Table S9301.  Gene #860: 'OR51A4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
OR51A4 MUTATED 2 1 0
OR51A4 WILD-TYPE 49 82 77
'OR51A4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.163 (Fisher's exact test), Q value = 0.46

Table S9302.  Gene #860: 'OR51A4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
OR51A4 MUTATED 6 2 0 0
OR51A4 WILD-TYPE 172 181 101 20
'OR51A4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.195 (Fisher's exact test), Q value = 0.5

Table S9303.  Gene #860: 'OR51A4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
OR51A4 MUTATED 1 0 4
OR51A4 WILD-TYPE 86 80 96
'OR51A4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S9304.  Gene #860: 'OR51A4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
OR51A4 MUTATED 1 3 2
OR51A4 WILD-TYPE 88 157 136
'OR51A4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.861 (Fisher's exact test), Q value = 1

Table S9305.  Gene #860: 'OR51A4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
OR51A4 MUTATED 2 3 1
OR51A4 WILD-TYPE 180 130 71
'OR51A4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0969 (Fisher's exact test), Q value = 0.34

Table S9306.  Gene #860: 'OR51A4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
OR51A4 MUTATED 0 1 4 3
OR51A4 WILD-TYPE 112 95 88 183
'OR51A4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.269 (Fisher's exact test), Q value = 0.59

Table S9307.  Gene #860: 'OR51A4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
OR51A4 MUTATED 0 1 3 0 1 1 2
OR51A4 WILD-TYPE 60 49 46 40 62 124 97
'OR51A4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.76 (Fisher's exact test), Q value = 1

Table S9308.  Gene #860: 'OR51A4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
OR51A4 MUTATED 2 2 0 4
OR51A4 WILD-TYPE 128 76 68 192
'OR51A4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.234 (Fisher's exact test), Q value = 0.56

Table S9309.  Gene #860: 'OR51A4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
OR51A4 MUTATED 1 2 0 1 4 0 0 0 0
OR51A4 WILD-TYPE 39 60 28 79 65 48 43 28 74
'CRYGA MUTATION STATUS' versus 'CN_CNMF'

P value = 0.043 (Fisher's exact test), Q value = 0.22

Table S9310.  Gene #861: 'CRYGA MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
CRYGA MUTATED 5 0 0 0
CRYGA WILD-TYPE 173 183 101 20

Figure S2588.  Get High-res Image Gene #861: 'CRYGA MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'CRYGA MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0127 (Fisher's exact test), Q value = 0.11

Table S9311.  Gene #861: 'CRYGA MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
CRYGA MUTATED 0 0 5
CRYGA WILD-TYPE 87 80 95

Figure S2589.  Get High-res Image Gene #861: 'CRYGA MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'CRYGA MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.14 (Fisher's exact test), Q value = 0.42

Table S9312.  Gene #861: 'CRYGA MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
CRYGA MUTATED 0 1 4
CRYGA WILD-TYPE 89 159 134
'CRYGA MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.718 (Fisher's exact test), Q value = 0.99

Table S9313.  Gene #861: 'CRYGA MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
CRYGA MUTATED 3 2 0
CRYGA WILD-TYPE 179 131 72
'CRYGA MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00053 (Fisher's exact test), Q value = 0.016

Table S9314.  Gene #861: 'CRYGA MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
CRYGA MUTATED 0 5 0 0
CRYGA WILD-TYPE 112 91 92 186

Figure S2590.  Get High-res Image Gene #861: 'CRYGA MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'CRYGA MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00044 (Fisher's exact test), Q value = 0.014

Table S9315.  Gene #861: 'CRYGA MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
CRYGA MUTATED 0 1 4 0 0 0 0
CRYGA WILD-TYPE 60 49 45 40 63 125 99

Figure S2591.  Get High-res Image Gene #861: 'CRYGA MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CRYGA MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.684 (Fisher's exact test), Q value = 0.96

Table S9316.  Gene #861: 'CRYGA MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
CRYGA MUTATED 2 0 0 3
CRYGA WILD-TYPE 128 78 68 193
'CRYGA MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.325 (Fisher's exact test), Q value = 0.65

Table S9317.  Gene #861: 'CRYGA MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
CRYGA MUTATED 0 0 0 1 3 0 1 0 0
CRYGA WILD-TYPE 40 62 28 79 66 48 42 28 74
'RNF10 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00915 (Fisher's exact test), Q value = 0.09

Table S9318.  Gene #862: 'RNF10 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
RNF10 MUTATED 3 0 0 3
RNF10 WILD-TYPE 43 58 64 40

Figure S2592.  Get High-res Image Gene #862: 'RNF10 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'RNF10 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0154 (Fisher's exact test), Q value = 0.12

Table S9319.  Gene #862: 'RNF10 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
RNF10 MUTATED 4 0 2
RNF10 WILD-TYPE 47 83 75

Figure S2593.  Get High-res Image Gene #862: 'RNF10 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'RNF10 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0032 (Fisher's exact test), Q value = 0.051

Table S9320.  Gene #862: 'RNF10 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
RNF10 MUTATED 10 0 3 1
RNF10 WILD-TYPE 168 183 98 19

Figure S2594.  Get High-res Image Gene #862: 'RNF10 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'RNF10 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.113 (Fisher's exact test), Q value = 0.37

Table S9321.  Gene #862: 'RNF10 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
RNF10 MUTATED 4 0 5
RNF10 WILD-TYPE 83 80 95
'RNF10 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.299 (Fisher's exact test), Q value = 0.63

Table S9322.  Gene #862: 'RNF10 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
RNF10 MUTATED 2 4 8
RNF10 WILD-TYPE 87 156 130
'RNF10 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.196 (Fisher's exact test), Q value = 0.5

Table S9323.  Gene #862: 'RNF10 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
RNF10 MUTATED 4 8 2
RNF10 WILD-TYPE 178 125 70
'RNF10 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.839 (Fisher's exact test), Q value = 1

Table S9324.  Gene #862: 'RNF10 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
RNF10 MUTATED 2 3 3 7
RNF10 WILD-TYPE 110 93 89 179
'RNF10 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.103 (Fisher's exact test), Q value = 0.35

Table S9325.  Gene #862: 'RNF10 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
RNF10 MUTATED 2 2 2 1 2 0 6
RNF10 WILD-TYPE 58 48 47 39 61 125 93
'RNF10 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.53 (Fisher's exact test), Q value = 0.85

Table S9326.  Gene #862: 'RNF10 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
RNF10 MUTATED 4 1 1 9
RNF10 WILD-TYPE 126 77 67 187
'RNF10 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.429 (Fisher's exact test), Q value = 0.76

Table S9327.  Gene #862: 'RNF10 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
RNF10 MUTATED 1 1 1 1 6 2 1 0 2
RNF10 WILD-TYPE 39 61 27 79 63 46 42 28 72
'RNF10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.484 (Fisher's exact test), Q value = 0.81

Table S9328.  Gene #862: 'RNF10 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
RNF10 MUTATED 2 0 1 0
RNF10 WILD-TYPE 31 31 26 19
'RNF10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.111 (Fisher's exact test), Q value = 0.37

Table S9329.  Gene #862: 'RNF10 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
RNF10 MUTATED 0 0 1 2
RNF10 WILD-TYPE 54 10 23 20
'NCAPD3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00673 (Fisher's exact test), Q value = 0.075

Table S9330.  Gene #863: 'NCAPD3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
NCAPD3 MUTATED 4 0 0 2
NCAPD3 WILD-TYPE 42 58 64 41

Figure S2595.  Get High-res Image Gene #863: 'NCAPD3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'NCAPD3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0726 (Fisher's exact test), Q value = 0.29

Table S9331.  Gene #863: 'NCAPD3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
NCAPD3 MUTATED 4 1 1
NCAPD3 WILD-TYPE 47 82 76
'NCAPD3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00776 (Fisher's exact test), Q value = 0.082

Table S9332.  Gene #863: 'NCAPD3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
NCAPD3 MUTATED 18 4 4 0
NCAPD3 WILD-TYPE 160 179 97 20

Figure S2596.  Get High-res Image Gene #863: 'NCAPD3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'NCAPD3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.215 (Fisher's exact test), Q value = 0.52

Table S9333.  Gene #863: 'NCAPD3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
NCAPD3 MUTATED 7 3 11
NCAPD3 WILD-TYPE 80 77 89
'NCAPD3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.801 (Fisher's exact test), Q value = 1

Table S9334.  Gene #863: 'NCAPD3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
NCAPD3 MUTATED 4 11 9
NCAPD3 WILD-TYPE 85 149 129
'NCAPD3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.466 (Fisher's exact test), Q value = 0.79

Table S9335.  Gene #863: 'NCAPD3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
NCAPD3 MUTATED 9 11 4
NCAPD3 WILD-TYPE 173 122 68
'NCAPD3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.265 (Fisher's exact test), Q value = 0.59

Table S9336.  Gene #863: 'NCAPD3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
NCAPD3 MUTATED 6 9 4 7
NCAPD3 WILD-TYPE 106 87 88 179
'NCAPD3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0046 (Fisher's exact test), Q value = 0.062

Table S9337.  Gene #863: 'NCAPD3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
NCAPD3 MUTATED 3 4 8 1 3 1 6
NCAPD3 WILD-TYPE 57 46 41 39 60 124 93

Figure S2597.  Get High-res Image Gene #863: 'NCAPD3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'NCAPD3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0217 (Fisher's exact test), Q value = 0.15

Table S9338.  Gene #863: 'NCAPD3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
NCAPD3 MUTATED 14 4 1 7
NCAPD3 WILD-TYPE 116 74 67 189

Figure S2598.  Get High-res Image Gene #863: 'NCAPD3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'NCAPD3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.747 (Fisher's exact test), Q value = 1

Table S9339.  Gene #863: 'NCAPD3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
NCAPD3 MUTATED 4 4 2 4 5 1 3 1 2
NCAPD3 WILD-TYPE 36 58 26 76 64 47 40 27 72
'NCAPD3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0748 (Fisher's exact test), Q value = 0.29

Table S9340.  Gene #863: 'NCAPD3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
NCAPD3 MUTATED 1 0 2 3
NCAPD3 WILD-TYPE 32 31 25 16
'NCAPD3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.922 (Fisher's exact test), Q value = 1

Table S9341.  Gene #863: 'NCAPD3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
NCAPD3 MUTATED 3 0 2 1
NCAPD3 WILD-TYPE 51 10 22 21
'MTTP MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.1 (Fisher's exact test), Q value = 0.35

Table S9342.  Gene #864: 'MTTP MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
MTTP MUTATED 5 1 1 2
MTTP WILD-TYPE 41 57 63 41
'MTTP MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0972 (Fisher's exact test), Q value = 0.34

Table S9343.  Gene #864: 'MTTP MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
MTTP MUTATED 5 2 2
MTTP WILD-TYPE 46 81 75
'MTTP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00435 (Fisher's exact test), Q value = 0.06

Table S9344.  Gene #864: 'MTTP MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
MTTP MUTATED 18 5 2 2
MTTP WILD-TYPE 160 178 99 18

Figure S2599.  Get High-res Image Gene #864: 'MTTP MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'MTTP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.786 (Fisher's exact test), Q value = 1

Table S9345.  Gene #864: 'MTTP MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
MTTP MUTATED 6 4 8
MTTP WILD-TYPE 81 76 92
'MTTP MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0255 (Fisher's exact test), Q value = 0.16

Table S9346.  Gene #864: 'MTTP MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
MTTP MUTATED 3 5 14
MTTP WILD-TYPE 86 155 124

Figure S2600.  Get High-res Image Gene #864: 'MTTP MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'MTTP MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0628 (Fisher's exact test), Q value = 0.27

Table S9347.  Gene #864: 'MTTP MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
MTTP MUTATED 16 4 2
MTTP WILD-TYPE 166 129 70
'MTTP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.575 (Fisher's exact test), Q value = 0.88

Table S9348.  Gene #864: 'MTTP MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
MTTP MUTATED 5 8 6 9
MTTP WILD-TYPE 107 88 86 177
'MTTP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0272 (Fisher's exact test), Q value = 0.17

Table S9349.  Gene #864: 'MTTP MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
MTTP MUTATED 3 1 8 1 5 3 7
MTTP WILD-TYPE 57 49 41 39 58 122 92

Figure S2601.  Get High-res Image Gene #864: 'MTTP MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'MTTP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.698 (Fisher's exact test), Q value = 0.97

Table S9350.  Gene #864: 'MTTP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
MTTP MUTATED 6 5 2 13
MTTP WILD-TYPE 124 73 66 183
'MTTP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00265 (Fisher's exact test), Q value = 0.045

Table S9351.  Gene #864: 'MTTP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
MTTP MUTATED 2 6 0 3 10 1 4 0 0
MTTP WILD-TYPE 38 56 28 77 59 47 39 28 74

Figure S2602.  Get High-res Image Gene #864: 'MTTP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'MTTP MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.374 (Fisher's exact test), Q value = 0.7

Table S9352.  Gene #864: 'MTTP MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
MTTP MUTATED 1 4 1 2
MTTP WILD-TYPE 32 27 26 17
'MTTP MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.772 (Fisher's exact test), Q value = 1

Table S9353.  Gene #864: 'MTTP MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
MTTP MUTATED 5 1 1 1
MTTP WILD-TYPE 49 9 23 21
'HEPH MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00802 (Fisher's exact test), Q value = 0.084

Table S9354.  Gene #865: 'HEPH MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
HEPH MUTATED 0 0 0 3
HEPH WILD-TYPE 46 58 64 40

Figure S2603.  Get High-res Image Gene #865: 'HEPH MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'HEPH MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.351 (Fisher's exact test), Q value = 0.68

Table S9355.  Gene #865: 'HEPH MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
HEPH MUTATED 1 0 2
HEPH WILD-TYPE 50 83 75
'HEPH MUTATION STATUS' versus 'CN_CNMF'

P value = 0.356 (Fisher's exact test), Q value = 0.68

Table S9356.  Gene #865: 'HEPH MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
HEPH MUTATED 11 5 3 0
HEPH WILD-TYPE 167 178 98 20
'HEPH MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.101 (Fisher's exact test), Q value = 0.35

Table S9357.  Gene #865: 'HEPH MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
HEPH MUTATED 4 2 10
HEPH WILD-TYPE 83 78 90
'HEPH MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.394 (Fisher's exact test), Q value = 0.72

Table S9358.  Gene #865: 'HEPH MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
HEPH MUTATED 2 5 8
HEPH WILD-TYPE 87 155 130
'HEPH MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.508 (Fisher's exact test), Q value = 0.83

Table S9359.  Gene #865: 'HEPH MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
HEPH MUTATED 9 5 1
HEPH WILD-TYPE 173 128 71
'HEPH MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0157 (Fisher's exact test), Q value = 0.12

Table S9360.  Gene #865: 'HEPH MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
HEPH MUTATED 5 9 2 3
HEPH WILD-TYPE 107 87 90 183

Figure S2604.  Get High-res Image Gene #865: 'HEPH MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'HEPH MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00367 (Fisher's exact test), Q value = 0.055

Table S9361.  Gene #865: 'HEPH MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
HEPH MUTATED 5 3 5 1 3 0 2
HEPH WILD-TYPE 55 47 44 39 60 125 97

Figure S2605.  Get High-res Image Gene #865: 'HEPH MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'HEPH MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00392 (Fisher's exact test), Q value = 0.057

Table S9362.  Gene #865: 'HEPH MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
HEPH MUTATED 12 1 2 3
HEPH WILD-TYPE 118 77 66 193

Figure S2606.  Get High-res Image Gene #865: 'HEPH MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'HEPH MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.504 (Fisher's exact test), Q value = 0.83

Table S9363.  Gene #865: 'HEPH MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
HEPH MUTATED 2 3 2 4 4 0 2 0 1
HEPH WILD-TYPE 38 59 26 76 65 48 41 28 73
'HEPH MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S9364.  Gene #865: 'HEPH MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
HEPH MUTATED 1 1 1 0
HEPH WILD-TYPE 32 30 26 19
'HEPH MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.252 (Fisher's exact test), Q value = 0.58

Table S9365.  Gene #865: 'HEPH MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
HEPH MUTATED 1 0 0 2
HEPH WILD-TYPE 53 10 24 20
'MAP2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0064 (Fisher's exact test), Q value = 0.074

Table S9366.  Gene #866: 'MAP2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
MAP2 MUTATED 4 1 2 8
MAP2 WILD-TYPE 42 57 62 35

Figure S2607.  Get High-res Image Gene #866: 'MAP2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'MAP2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0355 (Fisher's exact test), Q value = 0.2

Table S9367.  Gene #866: 'MAP2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
MAP2 MUTATED 8 3 4
MAP2 WILD-TYPE 43 80 73

Figure S2608.  Get High-res Image Gene #866: 'MAP2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'MAP2 MUTATION STATUS' versus 'CN_CNMF'

P value = 3e-05 (Fisher's exact test), Q value = 0.0022

Table S9368.  Gene #866: 'MAP2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
MAP2 MUTATED 30 6 6 0
MAP2 WILD-TYPE 148 177 95 20

Figure S2609.  Get High-res Image Gene #866: 'MAP2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'MAP2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.282 (Fisher's exact test), Q value = 0.61

Table S9369.  Gene #866: 'MAP2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
MAP2 MUTATED 12 5 10
MAP2 WILD-TYPE 75 75 90
'MAP2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.162 (Fisher's exact test), Q value = 0.45

Table S9370.  Gene #866: 'MAP2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
MAP2 MUTATED 10 9 15
MAP2 WILD-TYPE 79 151 123
'MAP2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.203 (Fisher's exact test), Q value = 0.51

Table S9371.  Gene #866: 'MAP2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
MAP2 MUTATED 21 8 5
MAP2 WILD-TYPE 161 125 67
'MAP2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.169 (Fisher's exact test), Q value = 0.46

Table S9372.  Gene #866: 'MAP2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
MAP2 MUTATED 5 12 10 16
MAP2 WILD-TYPE 107 84 82 170
'MAP2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00573 (Fisher's exact test), Q value = 0.069

Table S9373.  Gene #866: 'MAP2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
MAP2 MUTATED 4 3 11 3 5 4 13
MAP2 WILD-TYPE 56 47 38 37 58 121 86

Figure S2610.  Get High-res Image Gene #866: 'MAP2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'MAP2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.707 (Fisher's exact test), Q value = 0.98

Table S9374.  Gene #866: 'MAP2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
MAP2 MUTATED 11 9 7 15
MAP2 WILD-TYPE 119 69 61 181
'MAP2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.517 (Fisher's exact test), Q value = 0.84

Table S9375.  Gene #866: 'MAP2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
MAP2 MUTATED 2 8 3 9 8 1 3 3 5
MAP2 WILD-TYPE 38 54 25 71 61 47 40 25 69
'MAP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.33 (Fisher's exact test), Q value = 0.66

Table S9376.  Gene #866: 'MAP2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
MAP2 MUTATED 3 2 5 4
MAP2 WILD-TYPE 30 29 22 15
'MAP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.619 (Fisher's exact test), Q value = 0.92

Table S9377.  Gene #866: 'MAP2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
MAP2 MUTATED 8 1 4 1
MAP2 WILD-TYPE 46 9 20 21
'NOD2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0655 (Fisher's exact test), Q value = 0.28

Table S9378.  Gene #867: 'NOD2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
NOD2 MUTATED 1 0 0 2
NOD2 WILD-TYPE 45 58 64 41
'NOD2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.349 (Fisher's exact test), Q value = 0.68

Table S9379.  Gene #867: 'NOD2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
NOD2 MUTATED 1 0 2
NOD2 WILD-TYPE 50 83 75
'NOD2 MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S9380.  Gene #867: 'NOD2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
NOD2 MUTATED 14 1 1 4
NOD2 WILD-TYPE 164 182 100 16

Figure S2611.  Get High-res Image Gene #867: 'NOD2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'NOD2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.194 (Fisher's exact test), Q value = 0.5

Table S9381.  Gene #867: 'NOD2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
NOD2 MUTATED 5 2 9
NOD2 WILD-TYPE 82 78 91
'NOD2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0244 (Fisher's exact test), Q value = 0.16

Table S9382.  Gene #867: 'NOD2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
NOD2 MUTATED 0 5 9
NOD2 WILD-TYPE 89 155 129

Figure S2612.  Get High-res Image Gene #867: 'NOD2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'NOD2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.157 (Fisher's exact test), Q value = 0.45

Table S9383.  Gene #867: 'NOD2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
NOD2 MUTATED 8 6 0
NOD2 WILD-TYPE 174 127 72
'NOD2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0316 (Fisher's exact test), Q value = 0.18

Table S9384.  Gene #867: 'NOD2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
NOD2 MUTATED 2 8 6 4
NOD2 WILD-TYPE 110 88 86 182

Figure S2613.  Get High-res Image Gene #867: 'NOD2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'NOD2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00028 (Fisher's exact test), Q value = 0.01

Table S9385.  Gene #867: 'NOD2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
NOD2 MUTATED 3 1 8 1 4 0 3
NOD2 WILD-TYPE 57 49 41 39 59 125 96

Figure S2614.  Get High-res Image Gene #867: 'NOD2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'NOD2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0242 (Fisher's exact test), Q value = 0.16

Table S9386.  Gene #867: 'NOD2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
NOD2 MUTATED 11 3 0 6
NOD2 WILD-TYPE 119 75 68 190

Figure S2615.  Get High-res Image Gene #867: 'NOD2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'NOD2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0458 (Fisher's exact test), Q value = 0.23

Table S9387.  Gene #867: 'NOD2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
NOD2 MUTATED 5 3 1 3 6 1 1 0 0
NOD2 WILD-TYPE 35 59 27 77 63 47 42 28 74

Figure S2616.  Get High-res Image Gene #867: 'NOD2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'NOD2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.703 (Fisher's exact test), Q value = 0.97

Table S9388.  Gene #867: 'NOD2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
NOD2 MUTATED 2 1 0 0
NOD2 WILD-TYPE 31 30 27 19
'NOD2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.841 (Fisher's exact test), Q value = 1

Table S9389.  Gene #867: 'NOD2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
NOD2 MUTATED 2 0 0 1
NOD2 WILD-TYPE 52 10 24 21
'RSPO2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.942 (Fisher's exact test), Q value = 1

Table S9390.  Gene #868: 'RSPO2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
RSPO2 MUTATED 2 1 2 1
RSPO2 WILD-TYPE 44 57 62 42
'RSPO2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.509 (Fisher's exact test), Q value = 0.83

Table S9391.  Gene #868: 'RSPO2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
RSPO2 MUTATED 1 4 1
RSPO2 WILD-TYPE 50 79 76
'RSPO2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.967 (Fisher's exact test), Q value = 1

Table S9392.  Gene #868: 'RSPO2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
RSPO2 MUTATED 8 8 5 0
RSPO2 WILD-TYPE 170 175 96 20
'RSPO2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.269 (Fisher's exact test), Q value = 0.59

Table S9393.  Gene #868: 'RSPO2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
RSPO2 MUTATED 7 2 7
RSPO2 WILD-TYPE 80 78 93
'RSPO2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S9394.  Gene #868: 'RSPO2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
RSPO2 MUTATED 3 6 6
RSPO2 WILD-TYPE 86 154 132
'RSPO2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.887 (Fisher's exact test), Q value = 1

Table S9395.  Gene #868: 'RSPO2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
RSPO2 MUTATED 7 6 2
RSPO2 WILD-TYPE 175 127 70
'RSPO2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.164 (Fisher's exact test), Q value = 0.46

Table S9396.  Gene #868: 'RSPO2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
RSPO2 MUTATED 5 5 7 4
RSPO2 WILD-TYPE 107 91 85 182
'RSPO2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.397 (Fisher's exact test), Q value = 0.72

Table S9397.  Gene #868: 'RSPO2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
RSPO2 MUTATED 2 2 3 4 4 4 2
RSPO2 WILD-TYPE 58 48 46 36 59 121 97
'RSPO2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.116 (Fisher's exact test), Q value = 0.38

Table S9398.  Gene #868: 'RSPO2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
RSPO2 MUTATED 8 4 5 4
RSPO2 WILD-TYPE 122 74 63 192
'RSPO2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.541 (Fisher's exact test), Q value = 0.86

Table S9399.  Gene #868: 'RSPO2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
RSPO2 MUTATED 2 3 3 3 2 1 4 0 3
RSPO2 WILD-TYPE 38 59 25 77 67 47 39 28 71
'RSPO2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.369 (Fisher's exact test), Q value = 0.7

Table S9400.  Gene #868: 'RSPO2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
RSPO2 MUTATED 3 2 0 2
RSPO2 WILD-TYPE 30 29 27 17
'RSPO2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.281 (Fisher's exact test), Q value = 0.61

Table S9401.  Gene #868: 'RSPO2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
RSPO2 MUTATED 6 0 0 1
RSPO2 WILD-TYPE 48 10 24 21
'PCDH20 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.431 (Fisher's exact test), Q value = 0.76

Table S9402.  Gene #869: 'PCDH20 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
PCDH20 MUTATED 3 1 1 2
PCDH20 WILD-TYPE 43 57 63 41
'PCDH20 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.124 (Fisher's exact test), Q value = 0.39

Table S9403.  Gene #869: 'PCDH20 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
PCDH20 MUTATED 4 2 1
PCDH20 WILD-TYPE 47 81 76
'PCDH20 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0979 (Fisher's exact test), Q value = 0.34

Table S9404.  Gene #869: 'PCDH20 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
PCDH20 MUTATED 15 6 3 0
PCDH20 WILD-TYPE 163 177 98 20
'PCDH20 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.122 (Fisher's exact test), Q value = 0.39

Table S9405.  Gene #869: 'PCDH20 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
PCDH20 MUTATED 5 2 10
PCDH20 WILD-TYPE 82 78 90
'PCDH20 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.464 (Fisher's exact test), Q value = 0.79

Table S9406.  Gene #869: 'PCDH20 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
PCDH20 MUTATED 3 8 10
PCDH20 WILD-TYPE 86 152 128
'PCDH20 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.957 (Fisher's exact test), Q value = 1

Table S9407.  Gene #869: 'PCDH20 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
PCDH20 MUTATED 10 8 3
PCDH20 WILD-TYPE 172 125 69
'PCDH20 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.214 (Fisher's exact test), Q value = 0.52

Table S9408.  Gene #869: 'PCDH20 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
PCDH20 MUTATED 4 9 4 7
PCDH20 WILD-TYPE 108 87 88 179
'PCDH20 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0331 (Fisher's exact test), Q value = 0.19

Table S9409.  Gene #869: 'PCDH20 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
PCDH20 MUTATED 3 3 7 2 1 2 6
PCDH20 WILD-TYPE 57 47 42 38 62 123 93

Figure S2617.  Get High-res Image Gene #869: 'PCDH20 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'PCDH20 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.764 (Fisher's exact test), Q value = 1

Table S9410.  Gene #869: 'PCDH20 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
PCDH20 MUTATED 7 3 5 9
PCDH20 WILD-TYPE 123 75 63 187
'PCDH20 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00267 (Fisher's exact test), Q value = 0.045

Table S9411.  Gene #869: 'PCDH20 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
PCDH20 MUTATED 1 3 3 0 7 0 5 3 2
PCDH20 WILD-TYPE 39 59 25 80 62 48 38 25 72

Figure S2618.  Get High-res Image Gene #869: 'PCDH20 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'PCDH20 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.201 (Fisher's exact test), Q value = 0.51

Table S9412.  Gene #869: 'PCDH20 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
PCDH20 MUTATED 2 1 2 4
PCDH20 WILD-TYPE 31 30 25 15
'PCDH20 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.799 (Fisher's exact test), Q value = 1

Table S9413.  Gene #869: 'PCDH20 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
PCDH20 MUTATED 4 0 3 2
PCDH20 WILD-TYPE 50 10 21 20
'OR5H15 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.348 (Fisher's exact test), Q value = 0.68

Table S9414.  Gene #870: 'OR5H15 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
OR5H15 MUTATED 2 2 2 1
OR5H15 WILD-TYPE 176 181 99 19
'OR5H15 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.875 (Fisher's exact test), Q value = 1

Table S9415.  Gene #870: 'OR5H15 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
OR5H15 MUTATED 2 1 3
OR5H15 WILD-TYPE 85 79 97
'OR5H15 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.616 (Fisher's exact test), Q value = 0.91

Table S9416.  Gene #870: 'OR5H15 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
OR5H15 MUTATED 1 2 4
OR5H15 WILD-TYPE 88 158 134
'OR5H15 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.364 (Fisher's exact test), Q value = 0.69

Table S9417.  Gene #870: 'OR5H15 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
OR5H15 MUTATED 5 2 0
OR5H15 WILD-TYPE 177 131 72
'OR5H15 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.221 (Fisher's exact test), Q value = 0.53

Table S9418.  Gene #870: 'OR5H15 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
OR5H15 MUTATED 1 2 3 1
OR5H15 WILD-TYPE 111 94 89 185
'OR5H15 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00505 (Fisher's exact test), Q value = 0.064

Table S9419.  Gene #870: 'OR5H15 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
OR5H15 MUTATED 1 0 3 0 3 0 0
OR5H15 WILD-TYPE 59 50 46 40 60 125 99

Figure S2619.  Get High-res Image Gene #870: 'OR5H15 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'OR5H15 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.866 (Fisher's exact test), Q value = 1

Table S9420.  Gene #870: 'OR5H15 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
OR5H15 MUTATED 3 1 1 2
OR5H15 WILD-TYPE 127 77 67 194
'OR5H15 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.127 (Fisher's exact test), Q value = 0.4

Table S9421.  Gene #870: 'OR5H15 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
OR5H15 MUTATED 1 3 1 0 2 0 0 0 0
OR5H15 WILD-TYPE 39 59 27 80 67 48 43 28 74
'ACTL6B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.789 (Fisher's exact test), Q value = 1

Table S9422.  Gene #871: 'ACTL6B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ACTL6B MUTATED 3 5 1 0
ACTL6B WILD-TYPE 175 178 100 20
'ACTL6B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.094 (Fisher's exact test), Q value = 0.34

Table S9423.  Gene #871: 'ACTL6B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ACTL6B MUTATED 0 2 5
ACTL6B WILD-TYPE 87 78 95
'ACTL6B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.141 (Fisher's exact test), Q value = 0.42

Table S9424.  Gene #871: 'ACTL6B MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ACTL6B MUTATED 0 2 5
ACTL6B WILD-TYPE 89 158 133
'ACTL6B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.684 (Fisher's exact test), Q value = 0.96

Table S9425.  Gene #871: 'ACTL6B MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ACTL6B MUTATED 4 3 0
ACTL6B WILD-TYPE 178 130 72
'ACTL6B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.365 (Fisher's exact test), Q value = 0.69

Table S9426.  Gene #871: 'ACTL6B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ACTL6B MUTATED 2 4 1 2
ACTL6B WILD-TYPE 110 92 91 184
'ACTL6B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.153 (Fisher's exact test), Q value = 0.44

Table S9427.  Gene #871: 'ACTL6B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ACTL6B MUTATED 1 3 1 1 1 0 2
ACTL6B WILD-TYPE 59 47 48 39 62 125 97
'ACTL6B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0828 (Fisher's exact test), Q value = 0.31

Table S9428.  Gene #871: 'ACTL6B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ACTL6B MUTATED 6 1 0 2
ACTL6B WILD-TYPE 124 77 68 194
'ACTL6B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00199 (Fisher's exact test), Q value = 0.037

Table S9429.  Gene #871: 'ACTL6B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ACTL6B MUTATED 5 1 0 0 0 1 0 1 1
ACTL6B WILD-TYPE 35 61 28 80 69 47 43 27 73

Figure S2620.  Get High-res Image Gene #871: 'ACTL6B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'ZNF167 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.387 (Fisher's exact test), Q value = 0.71

Table S9430.  Gene #872: 'ZNF167 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ZNF167 MUTATED 2 1 1 3
ZNF167 WILD-TYPE 44 57 63 40
'ZNF167 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S9431.  Gene #872: 'ZNF167 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ZNF167 MUTATED 2 3 2
ZNF167 WILD-TYPE 49 80 75
'ZNF167 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00406 (Fisher's exact test), Q value = 0.058

Table S9432.  Gene #872: 'ZNF167 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ZNF167 MUTATED 13 1 4 0
ZNF167 WILD-TYPE 165 182 97 20

Figure S2621.  Get High-res Image Gene #872: 'ZNF167 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ZNF167 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.112 (Fisher's exact test), Q value = 0.37

Table S9433.  Gene #872: 'ZNF167 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ZNF167 MUTATED 7 2 2
ZNF167 WILD-TYPE 80 78 98
'ZNF167 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.77 (Fisher's exact test), Q value = 1

Table S9434.  Gene #872: 'ZNF167 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ZNF167 MUTATED 2 5 6
ZNF167 WILD-TYPE 87 155 132
'ZNF167 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.809 (Fisher's exact test), Q value = 1

Table S9435.  Gene #872: 'ZNF167 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ZNF167 MUTATED 5 5 3
ZNF167 WILD-TYPE 177 128 69
'ZNF167 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.214 (Fisher's exact test), Q value = 0.52

Table S9436.  Gene #872: 'ZNF167 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ZNF167 MUTATED 1 3 5 9
ZNF167 WILD-TYPE 111 93 87 177
'ZNF167 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.121 (Fisher's exact test), Q value = 0.39

Table S9437.  Gene #872: 'ZNF167 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ZNF167 MUTATED 2 1 5 0 2 2 6
ZNF167 WILD-TYPE 58 49 44 40 61 123 93
'ZNF167 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.197 (Fisher's exact test), Q value = 0.5

Table S9438.  Gene #872: 'ZNF167 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ZNF167 MUTATED 4 5 0 8
ZNF167 WILD-TYPE 126 73 68 188
'ZNF167 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.99 (Fisher's exact test), Q value = 1

Table S9439.  Gene #872: 'ZNF167 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ZNF167 MUTATED 2 3 1 3 3 1 1 0 3
ZNF167 WILD-TYPE 38 59 27 77 66 47 42 28 71
'ZNF167 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0961 (Fisher's exact test), Q value = 0.34

Table S9440.  Gene #872: 'ZNF167 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
ZNF167 MUTATED 2 0 0 2
ZNF167 WILD-TYPE 31 31 27 17
'ZNF167 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.428 (Fisher's exact test), Q value = 0.76

Table S9441.  Gene #872: 'ZNF167 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
ZNF167 MUTATED 4 0 0 0
ZNF167 WILD-TYPE 50 10 24 22
'LPAR6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.127 (Fisher's exact test), Q value = 0.4

Table S9442.  Gene #873: 'LPAR6 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
LPAR6 MUTATED 5 1 1 1
LPAR6 WILD-TYPE 173 182 100 19
'LPAR6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.68 (Fisher's exact test), Q value = 0.96

Table S9443.  Gene #873: 'LPAR6 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
LPAR6 MUTATED 3 1 2
LPAR6 WILD-TYPE 84 79 98
'LPAR6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.241 (Fisher's exact test), Q value = 0.56

Table S9444.  Gene #873: 'LPAR6 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
LPAR6 MUTATED 0 2 4
LPAR6 WILD-TYPE 89 158 134
'LPAR6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.667 (Fisher's exact test), Q value = 0.95

Table S9445.  Gene #873: 'LPAR6 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
LPAR6 MUTATED 4 2 0
LPAR6 WILD-TYPE 178 131 72
'LPAR6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.769 (Fisher's exact test), Q value = 1

Table S9446.  Gene #873: 'LPAR6 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
LPAR6 MUTATED 2 2 2 2
LPAR6 WILD-TYPE 110 94 90 184
'LPAR6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.113 (Fisher's exact test), Q value = 0.37

Table S9447.  Gene #873: 'LPAR6 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
LPAR6 MUTATED 2 2 2 0 1 0 1
LPAR6 WILD-TYPE 58 48 47 40 62 125 98
'LPAR6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.382 (Fisher's exact test), Q value = 0.71

Table S9448.  Gene #873: 'LPAR6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
LPAR6 MUTATED 4 1 0 2
LPAR6 WILD-TYPE 126 77 68 194
'LPAR6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.799 (Fisher's exact test), Q value = 1

Table S9449.  Gene #873: 'LPAR6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
LPAR6 MUTATED 1 1 1 0 1 1 1 0 1
LPAR6 WILD-TYPE 39 61 27 80 68 47 42 28 73
'EIF4G2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00702 (Fisher's exact test), Q value = 0.077

Table S9450.  Gene #874: 'EIF4G2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
EIF4G2 MUTATED 4 0 0 2
EIF4G2 WILD-TYPE 42 58 64 41

Figure S2622.  Get High-res Image Gene #874: 'EIF4G2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'EIF4G2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0228 (Fisher's exact test), Q value = 0.15

Table S9451.  Gene #874: 'EIF4G2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
EIF4G2 MUTATED 4 2 0
EIF4G2 WILD-TYPE 47 81 77

Figure S2623.  Get High-res Image Gene #874: 'EIF4G2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'EIF4G2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0284 (Fisher's exact test), Q value = 0.17

Table S9452.  Gene #874: 'EIF4G2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
EIF4G2 MUTATED 9 1 4 1
EIF4G2 WILD-TYPE 169 182 97 19

Figure S2624.  Get High-res Image Gene #874: 'EIF4G2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'EIF4G2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.584 (Fisher's exact test), Q value = 0.89

Table S9453.  Gene #874: 'EIF4G2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
EIF4G2 MUTATED 2 2 5
EIF4G2 WILD-TYPE 85 78 95
'EIF4G2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0416 (Fisher's exact test), Q value = 0.22

Table S9454.  Gene #874: 'EIF4G2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
EIF4G2 MUTATED 0 4 8
EIF4G2 WILD-TYPE 89 156 130

Figure S2625.  Get High-res Image Gene #874: 'EIF4G2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'EIF4G2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.801 (Fisher's exact test), Q value = 1

Table S9455.  Gene #874: 'EIF4G2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
EIF4G2 MUTATED 7 3 2
EIF4G2 WILD-TYPE 175 130 70
'EIF4G2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S9456.  Gene #874: 'EIF4G2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
EIF4G2 MUTATED 3 3 3 6
EIF4G2 WILD-TYPE 109 93 89 180
'EIF4G2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.143 (Fisher's exact test), Q value = 0.42

Table S9457.  Gene #874: 'EIF4G2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
EIF4G2 MUTATED 2 1 4 0 2 1 5
EIF4G2 WILD-TYPE 58 49 45 40 61 124 94
'EIF4G2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.684 (Fisher's exact test), Q value = 0.96

Table S9458.  Gene #874: 'EIF4G2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
EIF4G2 MUTATED 4 1 1 8
EIF4G2 WILD-TYPE 126 77 67 188
'EIF4G2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.473 (Fisher's exact test), Q value = 0.8

Table S9459.  Gene #874: 'EIF4G2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
EIF4G2 MUTATED 0 2 2 3 4 0 1 1 1
EIF4G2 WILD-TYPE 40 60 26 77 65 48 42 27 73
'EIF4G2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.872 (Fisher's exact test), Q value = 1

Table S9460.  Gene #874: 'EIF4G2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
EIF4G2 MUTATED 1 1 0 1
EIF4G2 WILD-TYPE 32 30 27 18
'EIF4G2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.842 (Fisher's exact test), Q value = 1

Table S9461.  Gene #874: 'EIF4G2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
EIF4G2 MUTATED 2 0 0 1
EIF4G2 WILD-TYPE 52 10 24 21
'PDP2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0224 (Fisher's exact test), Q value = 0.15

Table S9462.  Gene #875: 'PDP2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
PDP2 MUTATED 6 0 0 0
PDP2 WILD-TYPE 172 183 101 20

Figure S2626.  Get High-res Image Gene #875: 'PDP2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'PDP2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.63 (Fisher's exact test), Q value = 0.93

Table S9463.  Gene #875: 'PDP2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
PDP2 MUTATED 1 1 3
PDP2 WILD-TYPE 86 79 97
'PDP2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S9464.  Gene #875: 'PDP2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
PDP2 MUTATED 1 2 2
PDP2 WILD-TYPE 88 158 136
'PDP2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S9465.  Gene #875: 'PDP2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
PDP2 MUTATED 2 2 1
PDP2 WILD-TYPE 180 131 71
'PDP2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.084 (Fisher's exact test), Q value = 0.31

Table S9466.  Gene #875: 'PDP2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
PDP2 MUTATED 0 2 3 1
PDP2 WILD-TYPE 112 94 89 185
'PDP2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0403 (Fisher's exact test), Q value = 0.21

Table S9467.  Gene #875: 'PDP2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
PDP2 MUTATED 1 0 2 1 2 0 0
PDP2 WILD-TYPE 59 50 47 39 61 125 99

Figure S2627.  Get High-res Image Gene #875: 'PDP2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'PDP2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.248 (Fisher's exact test), Q value = 0.57

Table S9468.  Gene #875: 'PDP2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
PDP2 MUTATED 3 2 0 1
PDP2 WILD-TYPE 127 76 68 195
'PDP2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.15 (Fisher's exact test), Q value = 0.43

Table S9469.  Gene #875: 'PDP2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
PDP2 MUTATED 2 2 0 0 2 0 0 0 0
PDP2 WILD-TYPE 38 60 28 80 67 48 43 28 74
'C4ORF49 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.635 (Fisher's exact test), Q value = 0.93

Table S9470.  Gene #876: 'C4ORF49 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
C4ORF49 MUTATED 3 2 0 0
C4ORF49 WILD-TYPE 175 181 101 20
'C4ORF49 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.631 (Fisher's exact test), Q value = 0.93

Table S9471.  Gene #876: 'C4ORF49 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
C4ORF49 MUTATED 1 1 3
C4ORF49 WILD-TYPE 86 79 97
'C4ORF49 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.633 (Fisher's exact test), Q value = 0.93

Table S9472.  Gene #876: 'C4ORF49 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
C4ORF49 MUTATED 0 3 2
C4ORF49 WILD-TYPE 89 157 136
'C4ORF49 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.717 (Fisher's exact test), Q value = 0.99

Table S9473.  Gene #876: 'C4ORF49 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
C4ORF49 MUTATED 3 2 0
C4ORF49 WILD-TYPE 179 131 72
'C4ORF49 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.171 (Fisher's exact test), Q value = 0.47

Table S9474.  Gene #876: 'C4ORF49 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
C4ORF49 MUTATED 1 3 0 1
C4ORF49 WILD-TYPE 111 93 92 185
'C4ORF49 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0237 (Fisher's exact test), Q value = 0.16

Table S9475.  Gene #876: 'C4ORF49 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
C4ORF49 MUTATED 0 3 1 0 0 0 1
C4ORF49 WILD-TYPE 60 47 48 40 63 125 98

Figure S2628.  Get High-res Image Gene #876: 'C4ORF49 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'C4ORF49 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.406 (Fisher's exact test), Q value = 0.73

Table S9476.  Gene #876: 'C4ORF49 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
C4ORF49 MUTATED 3 1 0 1
C4ORF49 WILD-TYPE 127 77 68 195
'C4ORF49 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.749 (Fisher's exact test), Q value = 1

Table S9477.  Gene #876: 'C4ORF49 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
C4ORF49 MUTATED 0 1 1 0 1 1 0 0 1
C4ORF49 WILD-TYPE 40 61 27 80 68 47 43 28 73
'KLRC3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0541 (Fisher's exact test), Q value = 0.25

Table S9478.  Gene #877: 'KLRC3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
KLRC3 MUTATED 4 0 1 1
KLRC3 WILD-TYPE 174 183 100 19
'KLRC3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.558 (Fisher's exact test), Q value = 0.87

Table S9479.  Gene #877: 'KLRC3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
KLRC3 MUTATED 2 0 2
KLRC3 WILD-TYPE 85 80 98
'KLRC3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.635 (Fisher's exact test), Q value = 0.93

Table S9480.  Gene #877: 'KLRC3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
KLRC3 MUTATED 0 3 2
KLRC3 WILD-TYPE 89 157 136
'KLRC3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S9481.  Gene #877: 'KLRC3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
KLRC3 MUTATED 2 2 1
KLRC3 WILD-TYPE 180 131 71
'KLRC3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.24 (Fisher's exact test), Q value = 0.56

Table S9482.  Gene #877: 'KLRC3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
KLRC3 MUTATED 0 3 1 2
KLRC3 WILD-TYPE 112 93 91 184
'KLRC3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.195 (Fisher's exact test), Q value = 0.5

Table S9483.  Gene #877: 'KLRC3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
KLRC3 MUTATED 1 0 2 1 1 0 1
KLRC3 WILD-TYPE 59 50 47 39 62 125 98
'KLRC3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.885 (Fisher's exact test), Q value = 1

Table S9484.  Gene #877: 'KLRC3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
KLRC3 MUTATED 2 1 0 3
KLRC3 WILD-TYPE 128 77 68 193
'KLRC3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0438 (Fisher's exact test), Q value = 0.22

Table S9485.  Gene #877: 'KLRC3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
KLRC3 MUTATED 0 1 1 0 4 0 0 0 0
KLRC3 WILD-TYPE 40 61 27 80 65 48 43 28 74

Figure S2629.  Get High-res Image Gene #877: 'KLRC3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'RARS2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0235 (Fisher's exact test), Q value = 0.16

Table S9486.  Gene #878: 'RARS2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
RARS2 MUTATED 2 0 0 3
RARS2 WILD-TYPE 44 58 64 40

Figure S2630.  Get High-res Image Gene #878: 'RARS2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'RARS2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.64 (Fisher's exact test), Q value = 0.93

Table S9487.  Gene #878: 'RARS2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
RARS2 MUTATED 2 1 2
RARS2 WILD-TYPE 49 82 75
'RARS2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00591 (Fisher's exact test), Q value = 0.07

Table S9488.  Gene #878: 'RARS2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
RARS2 MUTATED 8 0 1 1
RARS2 WILD-TYPE 170 183 100 19

Figure S2631.  Get High-res Image Gene #878: 'RARS2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'RARS2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0772 (Fisher's exact test), Q value = 0.3

Table S9489.  Gene #878: 'RARS2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
RARS2 MUTATED 4 0 1
RARS2 WILD-TYPE 83 80 99
'RARS2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.545 (Fisher's exact test), Q value = 0.86

Table S9490.  Gene #878: 'RARS2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
RARS2 MUTATED 1 1 3
RARS2 WILD-TYPE 88 159 135
'RARS2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S9491.  Gene #878: 'RARS2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
RARS2 MUTATED 2 2 1
RARS2 WILD-TYPE 180 131 71
'RARS2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.283 (Fisher's exact test), Q value = 0.61

Table S9492.  Gene #878: 'RARS2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
RARS2 MUTATED 0 3 2 5
RARS2 WILD-TYPE 112 93 90 181
'RARS2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.481 (Fisher's exact test), Q value = 0.81

Table S9493.  Gene #878: 'RARS2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
RARS2 MUTATED 2 1 0 2 1 1 3
RARS2 WILD-TYPE 58 49 49 38 62 124 96
'RARS2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.737 (Fisher's exact test), Q value = 1

Table S9494.  Gene #878: 'RARS2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
RARS2 MUTATED 3 1 0 5
RARS2 WILD-TYPE 127 77 68 191
'RARS2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.841 (Fisher's exact test), Q value = 1

Table S9495.  Gene #878: 'RARS2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
RARS2 MUTATED 1 1 1 3 2 0 0 0 1
RARS2 WILD-TYPE 39 61 27 77 67 48 43 28 73
'OR5K2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00788 (Fisher's exact test), Q value = 0.083

Table S9496.  Gene #879: 'OR5K2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
OR5K2 MUTATED 9 0 2 0
OR5K2 WILD-TYPE 169 183 99 20

Figure S2632.  Get High-res Image Gene #879: 'OR5K2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'OR5K2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0726 (Fisher's exact test), Q value = 0.29

Table S9497.  Gene #879: 'OR5K2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
OR5K2 MUTATED 5 0 5
OR5K2 WILD-TYPE 82 80 95
'OR5K2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.775 (Fisher's exact test), Q value = 1

Table S9498.  Gene #879: 'OR5K2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
OR5K2 MUTATED 3 3 4
OR5K2 WILD-TYPE 86 157 134
'OR5K2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.917 (Fisher's exact test), Q value = 1

Table S9499.  Gene #879: 'OR5K2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
OR5K2 MUTATED 5 4 1
OR5K2 WILD-TYPE 177 129 71
'OR5K2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00348 (Fisher's exact test), Q value = 0.054

Table S9500.  Gene #879: 'OR5K2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
OR5K2 MUTATED 0 7 2 2
OR5K2 WILD-TYPE 112 89 90 184

Figure S2633.  Get High-res Image Gene #879: 'OR5K2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'OR5K2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00489 (Fisher's exact test), Q value = 0.063

Table S9501.  Gene #879: 'OR5K2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
OR5K2 MUTATED 0 2 4 3 0 1 1
OR5K2 WILD-TYPE 60 48 45 37 63 124 98

Figure S2634.  Get High-res Image Gene #879: 'OR5K2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'OR5K2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.324 (Fisher's exact test), Q value = 0.65

Table S9502.  Gene #879: 'OR5K2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
OR5K2 MUTATED 6 1 1 3
OR5K2 WILD-TYPE 124 77 67 193
'OR5K2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.419 (Fisher's exact test), Q value = 0.75

Table S9503.  Gene #879: 'OR5K2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
OR5K2 MUTATED 3 3 0 1 1 0 1 0 2
OR5K2 WILD-TYPE 37 59 28 79 68 48 42 28 72
'OR5K2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.19 (Fisher's exact test), Q value = 0.49

Table S9504.  Gene #879: 'OR5K2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
OR5K2 MUTATED 0 1 1 2
OR5K2 WILD-TYPE 33 30 26 17
'OR5K2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.672 (Fisher's exact test), Q value = 0.95

Table S9505.  Gene #879: 'OR5K2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
OR5K2 MUTATED 2 0 2 0
OR5K2 WILD-TYPE 52 10 22 22
'GABRP MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0661 (Fisher's exact test), Q value = 0.28

Table S9506.  Gene #880: 'GABRP MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
GABRP MUTATED 1 0 0 2
GABRP WILD-TYPE 45 58 64 41
'GABRP MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.788 (Fisher's exact test), Q value = 1

Table S9507.  Gene #880: 'GABRP MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
GABRP MUTATED 0 2 1
GABRP WILD-TYPE 51 81 76
'GABRP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.567 (Fisher's exact test), Q value = 0.87

Table S9508.  Gene #880: 'GABRP MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
GABRP MUTATED 7 3 3 0
GABRP WILD-TYPE 171 180 98 20
'GABRP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.368 (Fisher's exact test), Q value = 0.7

Table S9509.  Gene #880: 'GABRP MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
GABRP MUTATED 4 1 5
GABRP WILD-TYPE 83 79 95
'GABRP MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.904 (Fisher's exact test), Q value = 1

Table S9510.  Gene #880: 'GABRP MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
GABRP MUTATED 1 4 3
GABRP WILD-TYPE 88 156 135
'GABRP MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.725 (Fisher's exact test), Q value = 0.99

Table S9511.  Gene #880: 'GABRP MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
GABRP MUTATED 3 3 2
GABRP WILD-TYPE 179 130 70
'GABRP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0136 (Fisher's exact test), Q value = 0.11

Table S9512.  Gene #880: 'GABRP MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
GABRP MUTATED 3 7 0 3
GABRP WILD-TYPE 109 89 92 183

Figure S2635.  Get High-res Image Gene #880: 'GABRP MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'GABRP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.436 (Fisher's exact test), Q value = 0.76

Table S9513.  Gene #880: 'GABRP MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
GABRP MUTATED 2 2 3 1 1 1 3
GABRP WILD-TYPE 58 48 46 39 62 124 96
'GABRP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.63 (Fisher's exact test), Q value = 0.93

Table S9514.  Gene #880: 'GABRP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
GABRP MUTATED 5 3 1 4
GABRP WILD-TYPE 125 75 67 192
'GABRP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.33 (Fisher's exact test), Q value = 0.66

Table S9515.  Gene #880: 'GABRP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
GABRP MUTATED 2 2 2 1 3 2 1 0 0
GABRP WILD-TYPE 38 60 26 79 66 46 42 28 74
'GABRP MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.871 (Fisher's exact test), Q value = 1

Table S9516.  Gene #880: 'GABRP MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
GABRP MUTATED 1 1 0 1
GABRP WILD-TYPE 32 30 27 18
'GABRP MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.841 (Fisher's exact test), Q value = 1

Table S9517.  Gene #880: 'GABRP MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
GABRP MUTATED 2 0 0 1
GABRP WILD-TYPE 52 10 24 21
'CCT5 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.629 (Fisher's exact test), Q value = 0.93

Table S9518.  Gene #881: 'CCT5 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
CCT5 MUTATED 1 1 0 1
CCT5 WILD-TYPE 45 57 64 42
'CCT5 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.463 (Fisher's exact test), Q value = 0.79

Table S9519.  Gene #881: 'CCT5 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
CCT5 MUTATED 1 2 0
CCT5 WILD-TYPE 50 81 77
'CCT5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.164 (Fisher's exact test), Q value = 0.46

Table S9520.  Gene #881: 'CCT5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
CCT5 MUTATED 6 2 0 0
CCT5 WILD-TYPE 172 181 101 20
'CCT5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.632 (Fisher's exact test), Q value = 0.93

Table S9521.  Gene #881: 'CCT5 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
CCT5 MUTATED 1 1 3
CCT5 WILD-TYPE 86 79 97
'CCT5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.508 (Fisher's exact test), Q value = 0.83

Table S9522.  Gene #881: 'CCT5 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
CCT5 MUTATED 0 3 3
CCT5 WILD-TYPE 89 157 135
'CCT5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.58 (Fisher's exact test), Q value = 0.88

Table S9523.  Gene #881: 'CCT5 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
CCT5 MUTATED 3 3 0
CCT5 WILD-TYPE 179 130 72
'CCT5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.674 (Fisher's exact test), Q value = 0.96

Table S9524.  Gene #881: 'CCT5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
CCT5 MUTATED 1 3 1 3
CCT5 WILD-TYPE 111 93 91 183
'CCT5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0335 (Fisher's exact test), Q value = 0.19

Table S9525.  Gene #881: 'CCT5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
CCT5 MUTATED 0 1 3 1 0 0 3
CCT5 WILD-TYPE 60 49 46 39 63 125 96

Figure S2636.  Get High-res Image Gene #881: 'CCT5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CCT5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.491 (Fisher's exact test), Q value = 0.82

Table S9526.  Gene #881: 'CCT5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
CCT5 MUTATED 4 1 0 3
CCT5 WILD-TYPE 126 77 68 193
'CCT5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0705 (Fisher's exact test), Q value = 0.29

Table S9527.  Gene #881: 'CCT5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
CCT5 MUTATED 1 2 2 0 2 0 0 1 0
CCT5 WILD-TYPE 39 60 26 80 67 48 43 27 74
'MRPS18B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.296 (Fisher's exact test), Q value = 0.62

Table S9528.  Gene #882: 'MRPS18B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
MRPS18B MUTATED 1 1 3 0
MRPS18B WILD-TYPE 177 182 98 20
'MRPS18B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.323 (Fisher's exact test), Q value = 0.65

Table S9529.  Gene #882: 'MRPS18B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
MRPS18B MUTATED 0 1 3
MRPS18B WILD-TYPE 87 79 97
'MRPS18B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.25 (Fisher's exact test), Q value = 0.58

Table S9530.  Gene #882: 'MRPS18B MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
MRPS18B MUTATED 0 3 0
MRPS18B WILD-TYPE 89 157 138
'MRPS18B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0411 (Fisher's exact test), Q value = 0.21

Table S9531.  Gene #882: 'MRPS18B MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
MRPS18B MUTATED 0 1 2
MRPS18B WILD-TYPE 182 132 70

Figure S2637.  Get High-res Image Gene #882: 'MRPS18B MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'MRPS18B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.172 (Fisher's exact test), Q value = 0.47

Table S9532.  Gene #882: 'MRPS18B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
MRPS18B MUTATED 1 3 0 1
MRPS18B WILD-TYPE 111 93 92 185
'MRPS18B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0953 (Fisher's exact test), Q value = 0.34

Table S9533.  Gene #882: 'MRPS18B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
MRPS18B MUTATED 0 2 1 1 0 0 1
MRPS18B WILD-TYPE 60 48 48 39 63 125 98
'MRPS18B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.325 (Fisher's exact test), Q value = 0.65

Table S9534.  Gene #882: 'MRPS18B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
MRPS18B MUTATED 3 0 1 1
MRPS18B WILD-TYPE 127 78 67 195
'MRPS18B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.564 (Fisher's exact test), Q value = 0.87

Table S9535.  Gene #882: 'MRPS18B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
MRPS18B MUTATED 0 0 1 2 1 1 0 0 0
MRPS18B WILD-TYPE 40 62 27 78 68 47 43 28 74
'LEF1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.165 (Fisher's exact test), Q value = 0.46

Table S9536.  Gene #883: 'LEF1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
LEF1 MUTATED 3 1 0 1
LEF1 WILD-TYPE 43 57 64 42
'LEF1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0878 (Fisher's exact test), Q value = 0.32

Table S9537.  Gene #883: 'LEF1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
LEF1 MUTATED 3 2 0
LEF1 WILD-TYPE 48 81 77
'LEF1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0181 (Fisher's exact test), Q value = 0.13

Table S9538.  Gene #883: 'LEF1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
LEF1 MUTATED 6 0 1 1
LEF1 WILD-TYPE 172 183 100 19

Figure S2638.  Get High-res Image Gene #883: 'LEF1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'LEF1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.557 (Fisher's exact test), Q value = 0.87

Table S9539.  Gene #883: 'LEF1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
LEF1 MUTATED 2 0 2
LEF1 WILD-TYPE 85 80 98
'LEF1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.615 (Fisher's exact test), Q value = 0.91

Table S9540.  Gene #883: 'LEF1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
LEF1 MUTATED 1 2 4
LEF1 WILD-TYPE 88 158 134
'LEF1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.547 (Fisher's exact test), Q value = 0.87

Table S9541.  Gene #883: 'LEF1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
LEF1 MUTATED 5 1 1
LEF1 WILD-TYPE 177 132 71
'LEF1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.201 (Fisher's exact test), Q value = 0.51

Table S9542.  Gene #883: 'LEF1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
LEF1 MUTATED 0 1 2 6
LEF1 WILD-TYPE 112 95 90 180
'LEF1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.421 (Fisher's exact test), Q value = 0.75

Table S9543.  Gene #883: 'LEF1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
LEF1 MUTATED 0 0 2 0 1 2 4
LEF1 WILD-TYPE 60 50 47 40 62 123 95
'LEF1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.692 (Fisher's exact test), Q value = 0.97

Table S9544.  Gene #883: 'LEF1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
LEF1 MUTATED 2 2 0 5
LEF1 WILD-TYPE 128 76 68 191
'LEF1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.901 (Fisher's exact test), Q value = 1

Table S9545.  Gene #883: 'LEF1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
LEF1 MUTATED 0 2 0 2 2 0 1 1 1
LEF1 WILD-TYPE 40 60 28 78 67 48 42 27 73
'CD55 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.44 (Fisher's exact test), Q value = 0.77

Table S9546.  Gene #884: 'CD55 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
CD55 MUTATED 2 0 1 1
CD55 WILD-TYPE 44 58 63 42
'CD55 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0398 (Fisher's exact test), Q value = 0.21

Table S9547.  Gene #884: 'CD55 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
CD55 MUTATED 3 0 1
CD55 WILD-TYPE 48 83 76

Figure S2639.  Get High-res Image Gene #884: 'CD55 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'CD55 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.209 (Fisher's exact test), Q value = 0.52

Table S9548.  Gene #884: 'CD55 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
CD55 MUTATED 6 1 1 0
CD55 WILD-TYPE 172 182 100 20
'CD55 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.558 (Fisher's exact test), Q value = 0.87

Table S9549.  Gene #884: 'CD55 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
CD55 MUTATED 2 0 2
CD55 WILD-TYPE 85 80 98
'CD55 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S9550.  Gene #884: 'CD55 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
CD55 MUTATED 1 2 2
CD55 WILD-TYPE 88 158 136
'CD55 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0787 (Fisher's exact test), Q value = 0.3

Table S9551.  Gene #884: 'CD55 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
CD55 MUTATED 1 1 3
CD55 WILD-TYPE 181 132 69
'CD55 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.297 (Fisher's exact test), Q value = 0.63

Table S9552.  Gene #884: 'CD55 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
CD55 MUTATED 0 3 1 4
CD55 WILD-TYPE 112 93 91 182
'CD55 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0575 (Fisher's exact test), Q value = 0.26

Table S9553.  Gene #884: 'CD55 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
CD55 MUTATED 0 1 2 1 0 0 4
CD55 WILD-TYPE 60 49 47 39 63 125 95
'CD55 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.846 (Fisher's exact test), Q value = 1

Table S9554.  Gene #884: 'CD55 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
CD55 MUTATED 3 1 0 4
CD55 WILD-TYPE 127 77 68 192
'CD55 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00096 (Fisher's exact test), Q value = 0.024

Table S9555.  Gene #884: 'CD55 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
CD55 MUTATED 1 2 2 0 0 0 0 3 0
CD55 WILD-TYPE 39 60 26 80 69 48 43 25 74

Figure S2640.  Get High-res Image Gene #884: 'CD55 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'CIC MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0177 (Fisher's exact test), Q value = 0.13

Table S9556.  Gene #885: 'CIC MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
CIC MUTATED 3 0 0 0
CIC WILD-TYPE 43 58 64 43

Figure S2641.  Get High-res Image Gene #885: 'CIC MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'CIC MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0127 (Fisher's exact test), Q value = 0.11

Table S9557.  Gene #885: 'CIC MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
CIC MUTATED 3 0 0
CIC WILD-TYPE 48 83 77

Figure S2642.  Get High-res Image Gene #885: 'CIC MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'CIC MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00019 (Fisher's exact test), Q value = 0.008

Table S9558.  Gene #885: 'CIC MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
CIC MUTATED 19 3 1 0
CIC WILD-TYPE 159 180 100 20

Figure S2643.  Get High-res Image Gene #885: 'CIC MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'CIC MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.13 (Fisher's exact test), Q value = 0.4

Table S9559.  Gene #885: 'CIC MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
CIC MUTATED 8 2 9
CIC WILD-TYPE 79 78 91
'CIC MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00452 (Fisher's exact test), Q value = 0.061

Table S9560.  Gene #885: 'CIC MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
CIC MUTATED 1 5 14
CIC WILD-TYPE 88 155 124

Figure S2644.  Get High-res Image Gene #885: 'CIC MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'CIC MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.191 (Fisher's exact test), Q value = 0.49

Table S9561.  Gene #885: 'CIC MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
CIC MUTATED 13 6 1
CIC WILD-TYPE 169 127 71
'CIC MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00645 (Fisher's exact test), Q value = 0.074

Table S9562.  Gene #885: 'CIC MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
CIC MUTATED 3 11 5 4
CIC WILD-TYPE 109 85 87 182

Figure S2645.  Get High-res Image Gene #885: 'CIC MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'CIC MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S9563.  Gene #885: 'CIC MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
CIC MUTATED 0 3 14 1 1 0 4
CIC WILD-TYPE 60 47 35 39 62 125 95

Figure S2646.  Get High-res Image Gene #885: 'CIC MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CIC MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0125 (Fisher's exact test), Q value = 0.11

Table S9564.  Gene #885: 'CIC MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
CIC MUTATED 11 6 0 6
CIC WILD-TYPE 119 72 68 190

Figure S2647.  Get High-res Image Gene #885: 'CIC MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'CIC MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00807 (Fisher's exact test), Q value = 0.084

Table S9565.  Gene #885: 'CIC MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
CIC MUTATED 3 5 1 0 9 1 2 1 1
CIC WILD-TYPE 37 57 27 80 60 47 41 27 73

Figure S2648.  Get High-res Image Gene #885: 'CIC MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'CIC MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0161 (Fisher's exact test), Q value = 0.13

Table S9566.  Gene #885: 'CIC MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
CIC MUTATED 1 1 0 4
CIC WILD-TYPE 32 30 27 15

Figure S2649.  Get High-res Image Gene #885: 'CIC MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'CIC MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.562 (Fisher's exact test), Q value = 0.87

Table S9567.  Gene #885: 'CIC MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
CIC MUTATED 4 1 1 0
CIC WILD-TYPE 50 9 23 22
'TXNDC6 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.154 (Fisher's exact test), Q value = 0.44

Table S9568.  Gene #886: 'TXNDC6 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
TXNDC6 MUTATED 0 1 0 2
TXNDC6 WILD-TYPE 46 57 64 41
'TXNDC6 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S9569.  Gene #886: 'TXNDC6 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
TXNDC6 MUTATED 1 1 1
TXNDC6 WILD-TYPE 50 82 76
'TXNDC6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.639 (Fisher's exact test), Q value = 0.93

Table S9570.  Gene #886: 'TXNDC6 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
TXNDC6 MUTATED 5 2 2 0
TXNDC6 WILD-TYPE 173 181 99 20
'TXNDC6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.712 (Fisher's exact test), Q value = 0.98

Table S9571.  Gene #886: 'TXNDC6 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
TXNDC6 MUTATED 3 1 3
TXNDC6 WILD-TYPE 84 79 97
'TXNDC6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.904 (Fisher's exact test), Q value = 1

Table S9572.  Gene #886: 'TXNDC6 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
TXNDC6 MUTATED 1 4 3
TXNDC6 WILD-TYPE 88 156 135
'TXNDC6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S9573.  Gene #886: 'TXNDC6 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
TXNDC6 MUTATED 4 3 1
TXNDC6 WILD-TYPE 178 130 71
'TXNDC6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.678 (Fisher's exact test), Q value = 0.96

Table S9574.  Gene #886: 'TXNDC6 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
TXNDC6 MUTATED 1 3 1 4
TXNDC6 WILD-TYPE 111 93 91 182
'TXNDC6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.667 (Fisher's exact test), Q value = 0.95

Table S9575.  Gene #886: 'TXNDC6 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
TXNDC6 MUTATED 2 1 2 0 0 2 2
TXNDC6 WILD-TYPE 58 49 47 40 63 123 97
'TXNDC6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.282 (Fisher's exact test), Q value = 0.61

Table S9576.  Gene #886: 'TXNDC6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
TXNDC6 MUTATED 4 0 0 5
TXNDC6 WILD-TYPE 126 78 68 191
'TXNDC6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.474 (Fisher's exact test), Q value = 0.8

Table S9577.  Gene #886: 'TXNDC6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
TXNDC6 MUTATED 0 1 1 2 4 0 0 0 1
TXNDC6 WILD-TYPE 40 61 27 78 65 48 43 28 73
'HERC5 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.171 (Fisher's exact test), Q value = 0.47

Table S9578.  Gene #887: 'HERC5 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
HERC5 MUTATED 1 0 2 3
HERC5 WILD-TYPE 45 58 62 40
'HERC5 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.88 (Fisher's exact test), Q value = 1

Table S9579.  Gene #887: 'HERC5 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
HERC5 MUTATED 2 2 2
HERC5 WILD-TYPE 49 81 75
'HERC5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.162 (Fisher's exact test), Q value = 0.45

Table S9580.  Gene #887: 'HERC5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
HERC5 MUTATED 10 4 7 0
HERC5 WILD-TYPE 168 179 94 20
'HERC5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.796 (Fisher's exact test), Q value = 1

Table S9581.  Gene #887: 'HERC5 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
HERC5 MUTATED 4 4 7
HERC5 WILD-TYPE 83 76 93
'HERC5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.777 (Fisher's exact test), Q value = 1

Table S9582.  Gene #887: 'HERC5 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
HERC5 MUTATED 5 10 6
HERC5 WILD-TYPE 84 150 132
'HERC5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.666 (Fisher's exact test), Q value = 0.95

Table S9583.  Gene #887: 'HERC5 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
HERC5 MUTATED 8 9 4
HERC5 WILD-TYPE 174 124 68
'HERC5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.111 (Fisher's exact test), Q value = 0.37

Table S9584.  Gene #887: 'HERC5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
HERC5 MUTATED 5 8 1 7
HERC5 WILD-TYPE 107 88 91 179
'HERC5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.407 (Fisher's exact test), Q value = 0.73

Table S9585.  Gene #887: 'HERC5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
HERC5 MUTATED 3 4 2 3 3 2 4
HERC5 WILD-TYPE 57 46 47 37 60 123 95
'HERC5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.76 (Fisher's exact test), Q value = 1

Table S9586.  Gene #887: 'HERC5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
HERC5 MUTATED 8 3 2 8
HERC5 WILD-TYPE 122 75 66 188
'HERC5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.448 (Fisher's exact test), Q value = 0.77

Table S9587.  Gene #887: 'HERC5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
HERC5 MUTATED 1 3 2 2 3 1 5 0 4
HERC5 WILD-TYPE 39 59 26 78 66 47 38 28 70
'HERC5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.305 (Fisher's exact test), Q value = 0.63

Table S9588.  Gene #887: 'HERC5 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
HERC5 MUTATED 0 1 2 0
HERC5 WILD-TYPE 33 30 25 19
'HERC5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.447 (Fisher's exact test), Q value = 0.77

Table S9589.  Gene #887: 'HERC5 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
HERC5 MUTATED 1 0 2 0
HERC5 WILD-TYPE 53 10 22 22
'ENSA MUTATION STATUS' versus 'CN_CNMF'

P value = 0.182 (Fisher's exact test), Q value = 0.48

Table S9590.  Gene #888: 'ENSA MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ENSA MUTATED 5 1 0 0
ENSA WILD-TYPE 173 182 101 20
'ENSA MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S9591.  Gene #888: 'ENSA MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ENSA MUTATED 2 1 2
ENSA WILD-TYPE 85 79 98
'ENSA MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.848 (Fisher's exact test), Q value = 1

Table S9592.  Gene #888: 'ENSA MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ENSA MUTATED 1 3 1
ENSA WILD-TYPE 88 157 137
'ENSA MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.271 (Fisher's exact test), Q value = 0.6

Table S9593.  Gene #888: 'ENSA MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ENSA MUTATED 1 2 2
ENSA WILD-TYPE 181 131 70
'ENSA MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.587 (Fisher's exact test), Q value = 0.89

Table S9594.  Gene #888: 'ENSA MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ENSA MUTATED 2 2 1 1
ENSA WILD-TYPE 110 94 91 185
'ENSA MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00126 (Fisher's exact test), Q value = 0.029

Table S9595.  Gene #888: 'ENSA MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ENSA MUTATED 3 0 3 0 0 0 0
ENSA WILD-TYPE 57 50 46 40 63 125 99

Figure S2650.  Get High-res Image Gene #888: 'ENSA MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ENSA MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.943 (Fisher's exact test), Q value = 1

Table S9596.  Gene #888: 'ENSA MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ENSA MUTATED 2 1 1 2
ENSA WILD-TYPE 128 77 67 194
'ENSA MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.269 (Fisher's exact test), Q value = 0.59

Table S9597.  Gene #888: 'ENSA MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ENSA MUTATED 1 1 0 0 3 0 1 0 0
ENSA WILD-TYPE 39 61 28 80 66 48 42 28 74
'ENSA MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0603 (Fisher's exact test), Q value = 0.27

Table S9598.  Gene #888: 'ENSA MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
ENSA MUTATED 0 0 1 2
ENSA WILD-TYPE 33 31 26 17
'ENSA MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.695 (Fisher's exact test), Q value = 0.97

Table S9599.  Gene #888: 'ENSA MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
ENSA MUTATED 1 0 1 1
ENSA WILD-TYPE 53 10 23 21
'TMEM45A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.539 (Fisher's exact test), Q value = 0.86

Table S9600.  Gene #889: 'TMEM45A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
TMEM45A MUTATED 3 1 0 0
TMEM45A WILD-TYPE 175 182 101 20
'TMEM45A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0376 (Fisher's exact test), Q value = 0.2

Table S9601.  Gene #889: 'TMEM45A MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
TMEM45A MUTATED 0 0 4
TMEM45A WILD-TYPE 87 80 96

Figure S2651.  Get High-res Image Gene #889: 'TMEM45A MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'TMEM45A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S9602.  Gene #889: 'TMEM45A MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
TMEM45A MUTATED 1 2 1
TMEM45A WILD-TYPE 88 158 137
'TMEM45A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.673 (Fisher's exact test), Q value = 0.95

Table S9603.  Gene #889: 'TMEM45A MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
TMEM45A MUTATED 3 1 0
TMEM45A WILD-TYPE 179 132 72
'TMEM45A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.038 (Fisher's exact test), Q value = 0.2

Table S9604.  Gene #889: 'TMEM45A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
TMEM45A MUTATED 0 2 2 0
TMEM45A WILD-TYPE 112 94 90 186

Figure S2652.  Get High-res Image Gene #889: 'TMEM45A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'TMEM45A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0469 (Fisher's exact test), Q value = 0.23

Table S9605.  Gene #889: 'TMEM45A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
TMEM45A MUTATED 0 1 2 0 1 0 0
TMEM45A WILD-TYPE 60 49 47 40 62 125 99

Figure S2653.  Get High-res Image Gene #889: 'TMEM45A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'TMEM45A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.108 (Fisher's exact test), Q value = 0.36

Table S9606.  Gene #889: 'TMEM45A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
TMEM45A MUTATED 3 1 0 0
TMEM45A WILD-TYPE 127 77 68 196
'TMEM45A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.914 (Fisher's exact test), Q value = 1

Table S9607.  Gene #889: 'TMEM45A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
TMEM45A MUTATED 0 1 0 1 1 0 1 0 0
TMEM45A WILD-TYPE 40 61 28 79 68 48 42 28 74
'TMEM45A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00462 (Fisher's exact test), Q value = 0.062

Table S9608.  Gene #889: 'TMEM45A MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
TMEM45A MUTATED 0 0 0 3
TMEM45A WILD-TYPE 33 31 27 16

Figure S2654.  Get High-res Image Gene #889: 'TMEM45A MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'TMEM45A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S9609.  Gene #889: 'TMEM45A MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
TMEM45A MUTATED 2 0 1 0
TMEM45A WILD-TYPE 52 10 23 22
'TNNI3K MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0292 (Fisher's exact test), Q value = 0.17

Table S9610.  Gene #890: 'TNNI3K MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
TNNI3K MUTATED 6 1 1 3
TNNI3K WILD-TYPE 40 57 63 40

Figure S2655.  Get High-res Image Gene #890: 'TNNI3K MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'TNNI3K MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0164 (Fisher's exact test), Q value = 0.13

Table S9611.  Gene #890: 'TNNI3K MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
TNNI3K MUTATED 7 2 2
TNNI3K WILD-TYPE 44 81 75

Figure S2656.  Get High-res Image Gene #890: 'TNNI3K MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'TNNI3K MUTATION STATUS' versus 'CN_CNMF'

P value = 0.052 (Fisher's exact test), Q value = 0.25

Table S9612.  Gene #890: 'TNNI3K MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
TNNI3K MUTATED 15 5 4 2
TNNI3K WILD-TYPE 163 178 97 18
'TNNI3K MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S9613.  Gene #890: 'TNNI3K MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
TNNI3K MUTATED 5 4 6
TNNI3K WILD-TYPE 82 76 94
'TNNI3K MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.196 (Fisher's exact test), Q value = 0.5

Table S9614.  Gene #890: 'TNNI3K MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
TNNI3K MUTATED 2 10 11
TNNI3K WILD-TYPE 87 150 127
'TNNI3K MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S9615.  Gene #890: 'TNNI3K MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
TNNI3K MUTATED 11 8 4
TNNI3K WILD-TYPE 171 125 68
'TNNI3K MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.753 (Fisher's exact test), Q value = 1

Table S9616.  Gene #890: 'TNNI3K MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
TNNI3K MUTATED 5 5 3 12
TNNI3K WILD-TYPE 107 91 89 174
'TNNI3K MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00904 (Fisher's exact test), Q value = 0.089

Table S9617.  Gene #890: 'TNNI3K MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
TNNI3K MUTATED 4 5 3 1 1 1 10
TNNI3K WILD-TYPE 56 45 46 39 62 124 89

Figure S2657.  Get High-res Image Gene #890: 'TNNI3K MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'TNNI3K MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.233 (Fisher's exact test), Q value = 0.55

Table S9618.  Gene #890: 'TNNI3K MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
TNNI3K MUTATED 9 1 2 12
TNNI3K WILD-TYPE 121 77 66 184
'TNNI3K MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.404 (Fisher's exact test), Q value = 0.73

Table S9619.  Gene #890: 'TNNI3K MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
TNNI3K MUTATED 3 1 3 5 4 3 0 2 3
TNNI3K WILD-TYPE 37 61 25 75 65 45 43 26 71
'TNNI3K MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.464 (Fisher's exact test), Q value = 0.79

Table S9620.  Gene #890: 'TNNI3K MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
TNNI3K MUTATED 1 0 2 1
TNNI3K WILD-TYPE 32 31 25 18
'TNNI3K MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.489 (Fisher's exact test), Q value = 0.82

Table S9621.  Gene #890: 'TNNI3K MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
TNNI3K MUTATED 1 0 2 1
TNNI3K WILD-TYPE 53 10 22 21
'PFN4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0936 (Fisher's exact test), Q value = 0.34

Table S9622.  Gene #891: 'PFN4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
PFN4 MUTATED 5 0 1 0
PFN4 WILD-TYPE 173 183 100 20
'PFN4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.194 (Fisher's exact test), Q value = 0.5

Table S9623.  Gene #891: 'PFN4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
PFN4 MUTATED 1 0 4
PFN4 WILD-TYPE 86 80 96
'PFN4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S9624.  Gene #891: 'PFN4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
PFN4 MUTATED 1 2 1
PFN4 WILD-TYPE 88 158 137
'PFN4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.404 (Fisher's exact test), Q value = 0.73

Table S9625.  Gene #891: 'PFN4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
PFN4 MUTATED 3 0 1
PFN4 WILD-TYPE 179 133 71
'PFN4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0352 (Fisher's exact test), Q value = 0.19

Table S9626.  Gene #891: 'PFN4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
PFN4 MUTATED 0 4 1 1
PFN4 WILD-TYPE 112 92 91 185

Figure S2658.  Get High-res Image Gene #891: 'PFN4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'PFN4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00502 (Fisher's exact test), Q value = 0.064

Table S9627.  Gene #891: 'PFN4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
PFN4 MUTATED 0 0 4 0 1 0 1
PFN4 WILD-TYPE 60 50 45 40 62 125 98

Figure S2659.  Get High-res Image Gene #891: 'PFN4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'PFN4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.26 (Fisher's exact test), Q value = 0.58

Table S9628.  Gene #891: 'PFN4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
PFN4 MUTATED 4 0 0 2
PFN4 WILD-TYPE 126 78 68 194
'PFN4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0959 (Fisher's exact test), Q value = 0.34

Table S9629.  Gene #891: 'PFN4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
PFN4 MUTATED 2 1 0 0 3 0 0 0 0
PFN4 WILD-TYPE 38 61 28 80 66 48 43 28 74
'GPR75 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0235 (Fisher's exact test), Q value = 0.16

Table S9630.  Gene #892: 'GPR75 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
GPR75 MUTATED 6 0 2 1
GPR75 WILD-TYPE 172 183 99 19

Figure S2660.  Get High-res Image Gene #892: 'GPR75 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'GPR75 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.204 (Fisher's exact test), Q value = 0.51

Table S9631.  Gene #892: 'GPR75 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
GPR75 MUTATED 3 0 4
GPR75 WILD-TYPE 84 80 96
'GPR75 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.176 (Fisher's exact test), Q value = 0.48

Table S9632.  Gene #892: 'GPR75 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
GPR75 MUTATED 0 3 5
GPR75 WILD-TYPE 89 157 133
'GPR75 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.329 (Fisher's exact test), Q value = 0.66

Table S9633.  Gene #892: 'GPR75 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
GPR75 MUTATED 6 1 1
GPR75 WILD-TYPE 176 132 71
'GPR75 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0601 (Fisher's exact test), Q value = 0.27

Table S9634.  Gene #892: 'GPR75 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
GPR75 MUTATED 0 4 3 2
GPR75 WILD-TYPE 112 92 89 184
'GPR75 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.117 (Fisher's exact test), Q value = 0.38

Table S9635.  Gene #892: 'GPR75 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
GPR75 MUTATED 0 2 3 0 2 1 1
GPR75 WILD-TYPE 60 48 46 40 61 124 98
'GPR75 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.807 (Fisher's exact test), Q value = 1

Table S9636.  Gene #892: 'GPR75 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
GPR75 MUTATED 4 1 1 3
GPR75 WILD-TYPE 126 77 67 193
'GPR75 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.389 (Fisher's exact test), Q value = 0.72

Table S9637.  Gene #892: 'GPR75 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
GPR75 MUTATED 1 3 0 1 3 0 1 0 0
GPR75 WILD-TYPE 39 59 28 79 66 48 42 28 74
'LAX1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0425 (Fisher's exact test), Q value = 0.22

Table S9638.  Gene #893: 'LAX1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
LAX1 MUTATED 5 0 0 0
LAX1 WILD-TYPE 173 183 101 20

Figure S2661.  Get High-res Image Gene #893: 'LAX1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'LAX1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.556 (Fisher's exact test), Q value = 0.87

Table S9639.  Gene #893: 'LAX1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
LAX1 MUTATED 2 0 2
LAX1 WILD-TYPE 85 80 98
'LAX1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.138 (Fisher's exact test), Q value = 0.41

Table S9640.  Gene #893: 'LAX1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
LAX1 MUTATED 0 1 4
LAX1 WILD-TYPE 89 159 134
'LAX1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.502 (Fisher's exact test), Q value = 0.83

Table S9641.  Gene #893: 'LAX1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
LAX1 MUTATED 4 1 0
LAX1 WILD-TYPE 178 132 72
'LAX1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.19 (Fisher's exact test), Q value = 0.49

Table S9642.  Gene #893: 'LAX1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
LAX1 MUTATED 0 2 2 1
LAX1 WILD-TYPE 112 94 90 185
'LAX1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00055 (Fisher's exact test), Q value = 0.016

Table S9643.  Gene #893: 'LAX1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
LAX1 MUTATED 1 0 4 0 0 0 0
LAX1 WILD-TYPE 59 50 45 40 63 125 99

Figure S2662.  Get High-res Image Gene #893: 'LAX1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'LAX1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.688 (Fisher's exact test), Q value = 0.97

Table S9644.  Gene #893: 'LAX1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
LAX1 MUTATED 2 0 0 3
LAX1 WILD-TYPE 128 78 68 193
'LAX1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.054 (Fisher's exact test), Q value = 0.25

Table S9645.  Gene #893: 'LAX1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
LAX1 MUTATED 0 1 0 0 4 0 0 0 0
LAX1 WILD-TYPE 40 61 28 80 65 48 43 28 74
'DHX36 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0121 (Fisher's exact test), Q value = 0.11

Table S9646.  Gene #894: 'DHX36 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
DHX36 MUTATED 13 2 2 0
DHX36 WILD-TYPE 165 181 99 20

Figure S2663.  Get High-res Image Gene #894: 'DHX36 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'DHX36 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.297 (Fisher's exact test), Q value = 0.63

Table S9647.  Gene #894: 'DHX36 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
DHX36 MUTATED 7 2 6
DHX36 WILD-TYPE 80 78 94
'DHX36 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.166 (Fisher's exact test), Q value = 0.46

Table S9648.  Gene #894: 'DHX36 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
DHX36 MUTATED 1 5 8
DHX36 WILD-TYPE 88 155 130
'DHX36 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.557 (Fisher's exact test), Q value = 0.87

Table S9649.  Gene #894: 'DHX36 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
DHX36 MUTATED 7 6 1
DHX36 WILD-TYPE 175 127 71
'DHX36 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0223 (Fisher's exact test), Q value = 0.15

Table S9650.  Gene #894: 'DHX36 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
DHX36 MUTATED 3 5 7 2
DHX36 WILD-TYPE 109 91 85 184

Figure S2664.  Get High-res Image Gene #894: 'DHX36 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'DHX36 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 3e-05 (Fisher's exact test), Q value = 0.0022

Table S9651.  Gene #894: 'DHX36 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
DHX36 MUTATED 4 2 8 1 0 0 2
DHX36 WILD-TYPE 56 48 41 39 63 125 97

Figure S2665.  Get High-res Image Gene #894: 'DHX36 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'DHX36 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.693 (Fisher's exact test), Q value = 0.97

Table S9652.  Gene #894: 'DHX36 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
DHX36 MUTATED 6 3 3 5
DHX36 WILD-TYPE 124 75 65 191
'DHX36 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.124 (Fisher's exact test), Q value = 0.39

Table S9653.  Gene #894: 'DHX36 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
DHX36 MUTATED 0 2 0 3 7 1 3 0 1
DHX36 WILD-TYPE 40 60 28 77 62 47 40 28 73
'DHX36 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.112 (Fisher's exact test), Q value = 0.37

Table S9654.  Gene #894: 'DHX36 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
DHX36 MUTATED 4 0 2 3
DHX36 WILD-TYPE 29 31 25 16
'DHX36 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.432 (Fisher's exact test), Q value = 0.76

Table S9655.  Gene #894: 'DHX36 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
DHX36 MUTATED 4 0 4 1
DHX36 WILD-TYPE 50 10 20 21
'C13ORF23 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0652 (Fisher's exact test), Q value = 0.28

Table S9656.  Gene #895: 'C13ORF23 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
C13ORF23 MUTATED 1 0 0 2
C13ORF23 WILD-TYPE 45 58 64 41
'C13ORF23 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.253 (Fisher's exact test), Q value = 0.58

Table S9657.  Gene #895: 'C13ORF23 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
C13ORF23 MUTATED 2 1 0
C13ORF23 WILD-TYPE 49 82 77
'C13ORF23 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.122 (Fisher's exact test), Q value = 0.39

Table S9658.  Gene #895: 'C13ORF23 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
C13ORF23 MUTATED 9 2 2 0
C13ORF23 WILD-TYPE 169 181 99 20
'C13ORF23 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.366 (Fisher's exact test), Q value = 0.7

Table S9659.  Gene #895: 'C13ORF23 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
C13ORF23 MUTATED 4 1 5
C13ORF23 WILD-TYPE 83 79 95
'C13ORF23 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.541 (Fisher's exact test), Q value = 0.86

Table S9660.  Gene #895: 'C13ORF23 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
C13ORF23 MUTATED 1 6 4
C13ORF23 WILD-TYPE 88 154 134
'C13ORF23 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.283 (Fisher's exact test), Q value = 0.61

Table S9661.  Gene #895: 'C13ORF23 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
C13ORF23 MUTATED 6 5 0
C13ORF23 WILD-TYPE 176 128 72
'C13ORF23 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.546 (Fisher's exact test), Q value = 0.86

Table S9662.  Gene #895: 'C13ORF23 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
C13ORF23 MUTATED 3 3 4 3
C13ORF23 WILD-TYPE 109 93 88 183
'C13ORF23 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0401 (Fisher's exact test), Q value = 0.21

Table S9663.  Gene #895: 'C13ORF23 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
C13ORF23 MUTATED 2 2 4 0 2 0 3
C13ORF23 WILD-TYPE 58 48 45 40 61 125 96

Figure S2666.  Get High-res Image Gene #895: 'C13ORF23 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'C13ORF23 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.464 (Fisher's exact test), Q value = 0.79

Table S9664.  Gene #895: 'C13ORF23 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
C13ORF23 MUTATED 5 3 2 3
C13ORF23 WILD-TYPE 125 75 66 193
'C13ORF23 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0029 (Fisher's exact test), Q value = 0.048

Table S9665.  Gene #895: 'C13ORF23 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
C13ORF23 MUTATED 0 3 3 0 4 0 3 0 0
C13ORF23 WILD-TYPE 40 59 25 80 65 48 40 28 74

Figure S2667.  Get High-res Image Gene #895: 'C13ORF23 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'C13ORF23 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.268 (Fisher's exact test), Q value = 0.59

Table S9666.  Gene #895: 'C13ORF23 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
C13ORF23 MUTATED 1 1 1 3
C13ORF23 WILD-TYPE 32 30 26 16
'C13ORF23 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.643 (Fisher's exact test), Q value = 0.93

Table S9667.  Gene #895: 'C13ORF23 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
C13ORF23 MUTATED 2 1 2 1
C13ORF23 WILD-TYPE 52 9 22 21
'BAG5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.278 (Fisher's exact test), Q value = 0.61

Table S9668.  Gene #896: 'BAG5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
BAG5 MUTATED 3 0 0 0
BAG5 WILD-TYPE 175 183 101 20
'BAG5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.691 (Fisher's exact test), Q value = 0.97

Table S9669.  Gene #896: 'BAG5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
BAG5 MUTATED 0 1 0 2
BAG5 WILD-TYPE 112 95 92 184
'BAG5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.392 (Fisher's exact test), Q value = 0.72

Table S9670.  Gene #896: 'BAG5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
BAG5 MUTATED 1 0 1 0 0 0 1
BAG5 WILD-TYPE 59 50 48 40 63 125 98
'BAG5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.389 (Fisher's exact test), Q value = 0.72

Table S9671.  Gene #896: 'BAG5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
BAG5 MUTATED 0 0 0 3
BAG5 WILD-TYPE 130 78 68 193
'BAG5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.123 (Fisher's exact test), Q value = 0.39

Table S9672.  Gene #896: 'BAG5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
BAG5 MUTATED 0 0 1 0 2 0 0 0 0
BAG5 WILD-TYPE 40 62 27 80 67 48 43 28 74
'MIPOL1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.269 (Fisher's exact test), Q value = 0.59

Table S9673.  Gene #897: 'MIPOL1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
MIPOL1 MUTATED 2 2 0 1
MIPOL1 WILD-TYPE 176 181 101 19
'MIPOL1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.205 (Fisher's exact test), Q value = 0.51

Table S9674.  Gene #897: 'MIPOL1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
MIPOL1 MUTATED 3 0 1
MIPOL1 WILD-TYPE 84 80 99
'MIPOL1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S9675.  Gene #897: 'MIPOL1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
MIPOL1 MUTATED 1 2 1
MIPOL1 WILD-TYPE 88 158 137
'MIPOL1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S9676.  Gene #897: 'MIPOL1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
MIPOL1 MUTATED 2 1 1
MIPOL1 WILD-TYPE 180 132 71
'MIPOL1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0838 (Fisher's exact test), Q value = 0.31

Table S9677.  Gene #897: 'MIPOL1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
MIPOL1 MUTATED 1 2 2 0
MIPOL1 WILD-TYPE 111 94 90 186
'MIPOL1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.21 (Fisher's exact test), Q value = 0.52

Table S9678.  Gene #897: 'MIPOL1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
MIPOL1 MUTATED 1 1 2 0 0 1 0
MIPOL1 WILD-TYPE 59 49 47 40 63 124 99
'MIPOL1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.547 (Fisher's exact test), Q value = 0.87

Table S9679.  Gene #897: 'MIPOL1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
MIPOL1 MUTATED 1 2 0 2
MIPOL1 WILD-TYPE 129 76 68 194
'MIPOL1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.745 (Fisher's exact test), Q value = 1

Table S9680.  Gene #897: 'MIPOL1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
MIPOL1 MUTATED 1 0 0 0 1 1 1 0 1
MIPOL1 WILD-TYPE 39 62 28 80 68 47 42 28 73
'CDH22 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.569 (Fisher's exact test), Q value = 0.88

Table S9681.  Gene #898: 'CDH22 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
CDH22 MUTATED 3 2 1 2
CDH22 WILD-TYPE 43 56 63 41
'CDH22 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.532 (Fisher's exact test), Q value = 0.85

Table S9682.  Gene #898: 'CDH22 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
CDH22 MUTATED 3 2 3
CDH22 WILD-TYPE 48 81 74
'CDH22 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.592 (Fisher's exact test), Q value = 0.9

Table S9683.  Gene #898: 'CDH22 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
CDH22 MUTATED 10 6 3 1
CDH22 WILD-TYPE 168 177 98 19
'CDH22 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0777 (Fisher's exact test), Q value = 0.3

Table S9684.  Gene #898: 'CDH22 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
CDH22 MUTATED 1 3 8
CDH22 WILD-TYPE 86 77 92
'CDH22 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.314 (Fisher's exact test), Q value = 0.64

Table S9685.  Gene #898: 'CDH22 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
CDH22 MUTATED 2 6 9
CDH22 WILD-TYPE 87 154 129
'CDH22 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.369 (Fisher's exact test), Q value = 0.7

Table S9686.  Gene #898: 'CDH22 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
CDH22 MUTATED 10 6 1
CDH22 WILD-TYPE 172 127 71
'CDH22 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.61 (Fisher's exact test), Q value = 0.91

Table S9687.  Gene #898: 'CDH22 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
CDH22 MUTATED 3 6 4 7
CDH22 WILD-TYPE 109 90 88 179
'CDH22 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.657 (Fisher's exact test), Q value = 0.94

Table S9688.  Gene #898: 'CDH22 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
CDH22 MUTATED 2 3 4 1 2 3 5
CDH22 WILD-TYPE 58 47 45 39 61 122 94
'CDH22 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.165 (Fisher's exact test), Q value = 0.46

Table S9689.  Gene #898: 'CDH22 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
CDH22 MUTATED 9 1 4 6
CDH22 WILD-TYPE 121 77 64 190
'CDH22 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.806 (Fisher's exact test), Q value = 1

Table S9690.  Gene #898: 'CDH22 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
CDH22 MUTATED 2 1 1 5 4 1 3 0 3
CDH22 WILD-TYPE 38 61 27 75 65 47 40 28 71
'CDH22 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.941 (Fisher's exact test), Q value = 1

Table S9691.  Gene #898: 'CDH22 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
CDH22 MUTATED 2 1 2 1
CDH22 WILD-TYPE 31 30 25 18
'CDH22 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0916 (Fisher's exact test), Q value = 0.33

Table S9692.  Gene #898: 'CDH22 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
CDH22 MUTATED 2 2 2 0
CDH22 WILD-TYPE 52 8 22 22
'MAPK9 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.308 (Fisher's exact test), Q value = 0.64

Table S9693.  Gene #899: 'MAPK9 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
MAPK9 MUTATED 1 1 0 2
MAPK9 WILD-TYPE 45 57 64 41
'MAPK9 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.453 (Fisher's exact test), Q value = 0.78

Table S9694.  Gene #899: 'MAPK9 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
MAPK9 MUTATED 0 3 1
MAPK9 WILD-TYPE 51 80 76
'MAPK9 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.222 (Fisher's exact test), Q value = 0.54

Table S9695.  Gene #899: 'MAPK9 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
MAPK9 MUTATED 8 2 2 0
MAPK9 WILD-TYPE 170 181 99 20
'MAPK9 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.605 (Fisher's exact test), Q value = 0.91

Table S9696.  Gene #899: 'MAPK9 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
MAPK9 MUTATED 3 1 4
MAPK9 WILD-TYPE 84 79 96
'MAPK9 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S9697.  Gene #899: 'MAPK9 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
MAPK9 MUTATED 2 4 4
MAPK9 WILD-TYPE 87 156 134
'MAPK9 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.359 (Fisher's exact test), Q value = 0.69

Table S9698.  Gene #899: 'MAPK9 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
MAPK9 MUTATED 6 4 0
MAPK9 WILD-TYPE 176 129 72
'MAPK9 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.736 (Fisher's exact test), Q value = 1

Table S9699.  Gene #899: 'MAPK9 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
MAPK9 MUTATED 3 3 3 3
MAPK9 WILD-TYPE 109 93 89 183
'MAPK9 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.261 (Fisher's exact test), Q value = 0.59

Table S9700.  Gene #899: 'MAPK9 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
MAPK9 MUTATED 3 2 3 0 1 2 1
MAPK9 WILD-TYPE 57 48 46 40 62 123 98
'MAPK9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.577 (Fisher's exact test), Q value = 0.88

Table S9701.  Gene #899: 'MAPK9 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
MAPK9 MUTATED 5 2 2 3
MAPK9 WILD-TYPE 125 76 66 193
'MAPK9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.757 (Fisher's exact test), Q value = 1

Table S9702.  Gene #899: 'MAPK9 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
MAPK9 MUTATED 1 2 2 1 3 1 1 0 1
MAPK9 WILD-TYPE 39 60 26 79 66 47 42 28 73
'MAPK9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0129 (Fisher's exact test), Q value = 0.11

Table S9703.  Gene #899: 'MAPK9 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
MAPK9 MUTATED 0 0 2 3
MAPK9 WILD-TYPE 33 31 25 16

Figure S2668.  Get High-res Image Gene #899: 'MAPK9 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'MAPK9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.187 (Fisher's exact test), Q value = 0.49

Table S9704.  Gene #899: 'MAPK9 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
MAPK9 MUTATED 2 0 3 0
MAPK9 WILD-TYPE 52 10 21 22
'NRK MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0123 (Fisher's exact test), Q value = 0.11

Table S9705.  Gene #900: 'NRK MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
NRK MUTATED 5 1 0 3
NRK WILD-TYPE 41 57 64 40

Figure S2669.  Get High-res Image Gene #900: 'NRK MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'NRK MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.375 (Fisher's exact test), Q value = 0.71

Table S9706.  Gene #900: 'NRK MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
NRK MUTATED 4 3 2
NRK WILD-TYPE 47 80 75
'NRK MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0301 (Fisher's exact test), Q value = 0.18

Table S9707.  Gene #900: 'NRK MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
NRK MUTATED 16 7 3 3
NRK WILD-TYPE 162 176 98 17

Figure S2670.  Get High-res Image Gene #900: 'NRK MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'NRK MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.201 (Fisher's exact test), Q value = 0.51

Table S9708.  Gene #900: 'NRK MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
NRK MUTATED 6 3 11
NRK WILD-TYPE 81 77 89
'NRK MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.121 (Fisher's exact test), Q value = 0.39

Table S9709.  Gene #900: 'NRK MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
NRK MUTATED 1 11 8
NRK WILD-TYPE 88 149 130
'NRK MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.955 (Fisher's exact test), Q value = 1

Table S9710.  Gene #900: 'NRK MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
NRK MUTATED 9 7 4
NRK WILD-TYPE 173 126 68
'NRK MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.419 (Fisher's exact test), Q value = 0.75

Table S9711.  Gene #900: 'NRK MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
NRK MUTATED 5 9 6 9
NRK WILD-TYPE 107 87 86 177
'NRK MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0015 (Fisher's exact test), Q value = 0.032

Table S9712.  Gene #900: 'NRK MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
NRK MUTATED 4 2 6 7 2 1 7
NRK WILD-TYPE 56 48 43 33 61 124 92

Figure S2671.  Get High-res Image Gene #900: 'NRK MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'NRK MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0901 (Fisher's exact test), Q value = 0.33

Table S9713.  Gene #900: 'NRK MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
NRK MUTATED 14 2 3 10
NRK WILD-TYPE 116 76 65 186
'NRK MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0441 (Fisher's exact test), Q value = 0.22

Table S9714.  Gene #900: 'NRK MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
NRK MUTATED 2 4 3 6 9 1 3 1 0
NRK WILD-TYPE 38 58 25 74 60 47 40 27 74

Figure S2672.  Get High-res Image Gene #900: 'NRK MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'NRK MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.66 (Fisher's exact test), Q value = 0.95

Table S9715.  Gene #900: 'NRK MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
NRK MUTATED 3 2 1 0
NRK WILD-TYPE 30 29 26 19
'NRK MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.852 (Fisher's exact test), Q value = 1

Table S9716.  Gene #900: 'NRK MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
NRK MUTATED 3 0 1 2
NRK WILD-TYPE 51 10 23 20
'TMEM131 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.166 (Fisher's exact test), Q value = 0.46

Table S9717.  Gene #901: 'TMEM131 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
TMEM131 MUTATED 3 1 0 1
TMEM131 WILD-TYPE 43 57 64 42
'TMEM131 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.74 (Fisher's exact test), Q value = 1

Table S9718.  Gene #901: 'TMEM131 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
TMEM131 MUTATED 2 2 1
TMEM131 WILD-TYPE 49 81 76
'TMEM131 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.456 (Fisher's exact test), Q value = 0.78

Table S9719.  Gene #901: 'TMEM131 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
TMEM131 MUTATED 11 6 3 1
TMEM131 WILD-TYPE 167 177 98 19
'TMEM131 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.542 (Fisher's exact test), Q value = 0.86

Table S9720.  Gene #901: 'TMEM131 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
TMEM131 MUTATED 6 3 8
TMEM131 WILD-TYPE 81 77 92
'TMEM131 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.756 (Fisher's exact test), Q value = 1

Table S9721.  Gene #901: 'TMEM131 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
TMEM131 MUTATED 3 8 8
TMEM131 WILD-TYPE 86 152 130
'TMEM131 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.286 (Fisher's exact test), Q value = 0.61

Table S9722.  Gene #901: 'TMEM131 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
TMEM131 MUTATED 11 7 1
TMEM131 WILD-TYPE 171 126 71
'TMEM131 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.165 (Fisher's exact test), Q value = 0.46

Table S9723.  Gene #901: 'TMEM131 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
TMEM131 MUTATED 4 8 5 5
TMEM131 WILD-TYPE 108 88 87 181
'TMEM131 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0243 (Fisher's exact test), Q value = 0.16

Table S9724.  Gene #901: 'TMEM131 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
TMEM131 MUTATED 4 3 7 1 1 2 4
TMEM131 WILD-TYPE 56 47 42 39 62 123 95

Figure S2673.  Get High-res Image Gene #901: 'TMEM131 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'TMEM131 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0556 (Fisher's exact test), Q value = 0.26

Table S9725.  Gene #901: 'TMEM131 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
TMEM131 MUTATED 11 1 4 6
TMEM131 WILD-TYPE 119 77 64 190
'TMEM131 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.749 (Fisher's exact test), Q value = 1

Table S9726.  Gene #901: 'TMEM131 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
TMEM131 MUTATED 3 2 2 3 6 1 1 1 3
TMEM131 WILD-TYPE 37 60 26 77 63 47 42 27 71
'TMEM131 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.136 (Fisher's exact test), Q value = 0.41

Table S9727.  Gene #901: 'TMEM131 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
TMEM131 MUTATED 1 0 0 2
TMEM131 WILD-TYPE 32 31 27 17
'TMEM131 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.696 (Fisher's exact test), Q value = 0.97

Table S9728.  Gene #901: 'TMEM131 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
TMEM131 MUTATED 1 0 1 1
TMEM131 WILD-TYPE 53 10 23 21
'DOCK8 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.432 (Fisher's exact test), Q value = 0.76

Table S9729.  Gene #902: 'DOCK8 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
DOCK8 MUTATED 3 1 1 2
DOCK8 WILD-TYPE 43 57 63 41
'DOCK8 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S9730.  Gene #902: 'DOCK8 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
DOCK8 MUTATED 2 3 2
DOCK8 WILD-TYPE 49 80 75
'DOCK8 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00179 (Fisher's exact test), Q value = 0.035

Table S9731.  Gene #902: 'DOCK8 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
DOCK8 MUTATED 16 3 1 1
DOCK8 WILD-TYPE 162 180 100 19

Figure S2674.  Get High-res Image Gene #902: 'DOCK8 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'DOCK8 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.377 (Fisher's exact test), Q value = 0.71

Table S9732.  Gene #902: 'DOCK8 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
DOCK8 MUTATED 6 2 7
DOCK8 WILD-TYPE 81 78 93
'DOCK8 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.389 (Fisher's exact test), Q value = 0.72

Table S9733.  Gene #902: 'DOCK8 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
DOCK8 MUTATED 2 5 8
DOCK8 WILD-TYPE 87 155 130
'DOCK8 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.301 (Fisher's exact test), Q value = 0.63

Table S9734.  Gene #902: 'DOCK8 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
DOCK8 MUTATED 10 4 1
DOCK8 WILD-TYPE 172 129 71
'DOCK8 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.361 (Fisher's exact test), Q value = 0.69

Table S9735.  Gene #902: 'DOCK8 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
DOCK8 MUTATED 3 5 7 7
DOCK8 WILD-TYPE 109 91 85 179
'DOCK8 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00036 (Fisher's exact test), Q value = 0.012

Table S9736.  Gene #902: 'DOCK8 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
DOCK8 MUTATED 2 2 10 0 2 2 4
DOCK8 WILD-TYPE 58 48 39 40 61 123 95

Figure S2675.  Get High-res Image Gene #902: 'DOCK8 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'DOCK8 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.154 (Fisher's exact test), Q value = 0.44

Table S9737.  Gene #902: 'DOCK8 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
DOCK8 MUTATED 11 3 2 6
DOCK8 WILD-TYPE 119 75 66 190
'DOCK8 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.128 (Fisher's exact test), Q value = 0.4

Table S9738.  Gene #902: 'DOCK8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
DOCK8 MUTATED 3 4 2 2 7 0 2 1 1
DOCK8 WILD-TYPE 37 58 26 78 62 48 41 27 73
'DOCK8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0108 (Fisher's exact test), Q value = 0.1

Table S9739.  Gene #902: 'DOCK8 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
DOCK8 MUTATED 1 1 1 5
DOCK8 WILD-TYPE 32 30 26 14

Figure S2676.  Get High-res Image Gene #902: 'DOCK8 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'DOCK8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.951 (Fisher's exact test), Q value = 1

Table S9740.  Gene #902: 'DOCK8 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
DOCK8 MUTATED 5 0 2 1
DOCK8 WILD-TYPE 49 10 22 21
'FLNB MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00036 (Fisher's exact test), Q value = 0.012

Table S9741.  Gene #903: 'FLNB MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
FLNB MUTATED 3 0 0 6
FLNB WILD-TYPE 43 58 64 37

Figure S2677.  Get High-res Image Gene #903: 'FLNB MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'FLNB MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00101 (Fisher's exact test), Q value = 0.025

Table S9742.  Gene #903: 'FLNB MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
FLNB MUTATED 7 1 1
FLNB WILD-TYPE 44 82 76

Figure S2678.  Get High-res Image Gene #903: 'FLNB MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'FLNB MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S9743.  Gene #903: 'FLNB MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
FLNB MUTATED 26 4 1 0
FLNB WILD-TYPE 152 179 100 20

Figure S2679.  Get High-res Image Gene #903: 'FLNB MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'FLNB MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00019 (Fisher's exact test), Q value = 0.008

Table S9744.  Gene #903: 'FLNB MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
FLNB MUTATED 4 0 15
FLNB WILD-TYPE 83 80 85

Figure S2680.  Get High-res Image Gene #903: 'FLNB MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'FLNB MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.937 (Fisher's exact test), Q value = 1

Table S9745.  Gene #903: 'FLNB MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
FLNB MUTATED 6 11 11
FLNB WILD-TYPE 83 149 127
'FLNB MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.814 (Fisher's exact test), Q value = 1

Table S9746.  Gene #903: 'FLNB MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
FLNB MUTATED 13 11 4
FLNB WILD-TYPE 169 122 68
'FLNB MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00204 (Fisher's exact test), Q value = 0.038

Table S9747.  Gene #903: 'FLNB MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
FLNB MUTATED 1 13 5 12
FLNB WILD-TYPE 111 83 87 174

Figure S2681.  Get High-res Image Gene #903: 'FLNB MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'FLNB MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 9e-05 (Fisher's exact test), Q value = 0.0048

Table S9748.  Gene #903: 'FLNB MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
FLNB MUTATED 2 3 10 2 2 1 11
FLNB WILD-TYPE 58 47 39 38 61 124 88

Figure S2682.  Get High-res Image Gene #903: 'FLNB MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'FLNB MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.776 (Fisher's exact test), Q value = 1

Table S9749.  Gene #903: 'FLNB MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
FLNB MUTATED 8 3 3 14
FLNB WILD-TYPE 122 75 65 182
'FLNB MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00193 (Fisher's exact test), Q value = 0.037

Table S9750.  Gene #903: 'FLNB MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
FLNB MUTATED 3 5 1 2 13 1 1 1 1
FLNB WILD-TYPE 37 57 27 78 56 47 42 27 73

Figure S2683.  Get High-res Image Gene #903: 'FLNB MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'FLNB MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0143 (Fisher's exact test), Q value = 0.12

Table S9751.  Gene #903: 'FLNB MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
FLNB MUTATED 1 0 1 4
FLNB WILD-TYPE 32 31 26 15

Figure S2684.  Get High-res Image Gene #903: 'FLNB MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'FLNB MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.281 (Fisher's exact test), Q value = 0.61

Table S9752.  Gene #903: 'FLNB MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
FLNB MUTATED 3 0 3 0
FLNB WILD-TYPE 51 10 21 22
'PTTG1IP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0292 (Fisher's exact test), Q value = 0.17

Table S9753.  Gene #904: 'PTTG1IP MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
PTTG1IP MUTATED 5 0 1 1
PTTG1IP WILD-TYPE 173 183 100 19

Figure S2685.  Get High-res Image Gene #904: 'PTTG1IP MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'PTTG1IP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.445 (Fisher's exact test), Q value = 0.77

Table S9754.  Gene #904: 'PTTG1IP MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
PTTG1IP MUTATED 4 1 2
PTTG1IP WILD-TYPE 83 79 98
'PTTG1IP MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.306 (Fisher's exact test), Q value = 0.64

Table S9755.  Gene #904: 'PTTG1IP MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
PTTG1IP MUTATED 0 3 4
PTTG1IP WILD-TYPE 89 157 134
'PTTG1IP MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S9756.  Gene #904: 'PTTG1IP MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
PTTG1IP MUTATED 4 2 1
PTTG1IP WILD-TYPE 178 131 71
'PTTG1IP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.123 (Fisher's exact test), Q value = 0.39

Table S9757.  Gene #904: 'PTTG1IP MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
PTTG1IP MUTATED 1 4 1 1
PTTG1IP WILD-TYPE 111 92 91 185
'PTTG1IP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0459 (Fisher's exact test), Q value = 0.23

Table S9758.  Gene #904: 'PTTG1IP MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
PTTG1IP MUTATED 1 1 3 1 0 0 1
PTTG1IP WILD-TYPE 59 49 46 39 63 125 98

Figure S2686.  Get High-res Image Gene #904: 'PTTG1IP MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'PTTG1IP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.35 (Fisher's exact test), Q value = 0.68

Table S9759.  Gene #904: 'PTTG1IP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
PTTG1IP MUTATED 4 0 1 2
PTTG1IP WILD-TYPE 126 78 67 194
'PTTG1IP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.301 (Fisher's exact test), Q value = 0.63

Table S9760.  Gene #904: 'PTTG1IP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
PTTG1IP MUTATED 1 1 2 0 1 0 1 0 1
PTTG1IP WILD-TYPE 39 61 26 80 68 48 42 28 73
'FUCA2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.352 (Fisher's exact test), Q value = 0.68

Table S9761.  Gene #905: 'FUCA2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
FUCA2 MUTATED 1 2 1 1
FUCA2 WILD-TYPE 177 181 100 19
'FUCA2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.165 (Fisher's exact test), Q value = 0.46

Table S9762.  Gene #905: 'FUCA2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
FUCA2 MUTATED 3 2 0
FUCA2 WILD-TYPE 84 78 100
'FUCA2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.684 (Fisher's exact test), Q value = 0.96

Table S9763.  Gene #905: 'FUCA2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
FUCA2 MUTATED 0 2 2
FUCA2 WILD-TYPE 89 158 136
'FUCA2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.829 (Fisher's exact test), Q value = 1

Table S9764.  Gene #905: 'FUCA2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
FUCA2 MUTATED 2 2 0
FUCA2 WILD-TYPE 180 131 72
'FUCA2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.137 (Fisher's exact test), Q value = 0.41

Table S9765.  Gene #905: 'FUCA2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
FUCA2 MUTATED 2 1 2 0
FUCA2 WILD-TYPE 110 95 90 186
'FUCA2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0123 (Fisher's exact test), Q value = 0.11

Table S9766.  Gene #905: 'FUCA2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
FUCA2 MUTATED 3 0 1 1 0 0 0
FUCA2 WILD-TYPE 57 50 48 39 63 125 99

Figure S2687.  Get High-res Image Gene #905: 'FUCA2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'FUCA2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0861 (Fisher's exact test), Q value = 0.32

Table S9767.  Gene #905: 'FUCA2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
FUCA2 MUTATED 2 1 2 0
FUCA2 WILD-TYPE 128 77 66 196
'FUCA2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.325 (Fisher's exact test), Q value = 0.65

Table S9768.  Gene #905: 'FUCA2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
FUCA2 MUTATED 1 1 0 1 0 0 2 0 0
FUCA2 WILD-TYPE 39 61 28 79 69 48 41 28 74
'VN1R4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.513 (Fisher's exact test), Q value = 0.83

Table S9769.  Gene #906: 'VN1R4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
VN1R4 MUTATED 4 1 2 0
VN1R4 WILD-TYPE 174 182 99 20
'VN1R4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.684 (Fisher's exact test), Q value = 0.96

Table S9770.  Gene #906: 'VN1R4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
VN1R4 MUTATED 3 1 2
VN1R4 WILD-TYPE 84 79 98
'VN1R4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.265 (Fisher's exact test), Q value = 0.59

Table S9771.  Gene #906: 'VN1R4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
VN1R4 MUTATED 2 1 4
VN1R4 WILD-TYPE 87 159 134
'VN1R4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.549 (Fisher's exact test), Q value = 0.87

Table S9772.  Gene #906: 'VN1R4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
VN1R4 MUTATED 5 1 1
VN1R4 WILD-TYPE 177 132 71
'VN1R4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0222 (Fisher's exact test), Q value = 0.15

Table S9773.  Gene #906: 'VN1R4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
VN1R4 MUTATED 0 1 5 2
VN1R4 WILD-TYPE 112 95 87 184

Figure S2688.  Get High-res Image Gene #906: 'VN1R4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'VN1R4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0966 (Fisher's exact test), Q value = 0.34

Table S9774.  Gene #906: 'VN1R4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
VN1R4 MUTATED 1 0 2 0 3 0 2
VN1R4 WILD-TYPE 59 50 47 40 60 125 97
'VN1R4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.267 (Fisher's exact test), Q value = 0.59

Table S9775.  Gene #906: 'VN1R4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
VN1R4 MUTATED 3 3 0 2
VN1R4 WILD-TYPE 127 75 68 194
'VN1R4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.354 (Fisher's exact test), Q value = 0.68

Table S9776.  Gene #906: 'VN1R4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
VN1R4 MUTATED 1 3 1 1 2 0 0 0 0
VN1R4 WILD-TYPE 39 59 27 79 67 48 43 28 74
'ARFIP1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.05 (Fisher's exact test), Q value = 0.24

Table S9777.  Gene #907: 'ARFIP1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ARFIP1 MUTATED 0 0 1 3
ARFIP1 WILD-TYPE 46 58 63 40

Figure S2689.  Get High-res Image Gene #907: 'ARFIP1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'ARFIP1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.554 (Fisher's exact test), Q value = 0.87

Table S9778.  Gene #907: 'ARFIP1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ARFIP1 MUTATED 2 1 1
ARFIP1 WILD-TYPE 49 82 76
'ARFIP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0165 (Fisher's exact test), Q value = 0.13

Table S9779.  Gene #907: 'ARFIP1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ARFIP1 MUTATED 10 1 1 0
ARFIP1 WILD-TYPE 168 182 100 20

Figure S2690.  Get High-res Image Gene #907: 'ARFIP1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ARFIP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0685 (Fisher's exact test), Q value = 0.28

Table S9780.  Gene #907: 'ARFIP1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ARFIP1 MUTATED 5 0 2
ARFIP1 WILD-TYPE 82 80 98
'ARFIP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.17 (Fisher's exact test), Q value = 0.47

Table S9781.  Gene #907: 'ARFIP1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ARFIP1 MUTATED 2 2 7
ARFIP1 WILD-TYPE 87 158 131
'ARFIP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.561 (Fisher's exact test), Q value = 0.87

Table S9782.  Gene #907: 'ARFIP1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ARFIP1 MUTATED 7 3 1
ARFIP1 WILD-TYPE 175 130 71
'ARFIP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0563 (Fisher's exact test), Q value = 0.26

Table S9783.  Gene #907: 'ARFIP1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ARFIP1 MUTATED 0 4 4 3
ARFIP1 WILD-TYPE 112 92 88 183
'ARFIP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0661 (Fisher's exact test), Q value = 0.28

Table S9784.  Gene #907: 'ARFIP1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ARFIP1 MUTATED 0 2 4 0 2 1 2
ARFIP1 WILD-TYPE 60 48 45 40 61 124 97
'ARFIP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.746 (Fisher's exact test), Q value = 1

Table S9785.  Gene #907: 'ARFIP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ARFIP1 MUTATED 2 3 1 5
ARFIP1 WILD-TYPE 128 75 67 191
'ARFIP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.338 (Fisher's exact test), Q value = 0.67

Table S9786.  Gene #907: 'ARFIP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ARFIP1 MUTATED 1 3 1 0 2 0 0 1 3
ARFIP1 WILD-TYPE 39 59 27 80 67 48 43 27 71
'UPF2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00143 (Fisher's exact test), Q value = 0.031

Table S9787.  Gene #908: 'UPF2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
UPF2 MUTATED 2 0 0 5
UPF2 WILD-TYPE 44 58 64 38

Figure S2691.  Get High-res Image Gene #908: 'UPF2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'UPF2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0204 (Fisher's exact test), Q value = 0.14

Table S9788.  Gene #908: 'UPF2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
UPF2 MUTATED 4 0 3
UPF2 WILD-TYPE 47 83 74

Figure S2692.  Get High-res Image Gene #908: 'UPF2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'UPF2 MUTATION STATUS' versus 'CN_CNMF'

P value = 7e-05 (Fisher's exact test), Q value = 0.0041

Table S9789.  Gene #908: 'UPF2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
UPF2 MUTATED 17 1 1 0
UPF2 WILD-TYPE 161 182 100 20

Figure S2693.  Get High-res Image Gene #908: 'UPF2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'UPF2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0466 (Fisher's exact test), Q value = 0.23

Table S9790.  Gene #908: 'UPF2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
UPF2 MUTATED 5 0 6
UPF2 WILD-TYPE 82 80 94

Figure S2694.  Get High-res Image Gene #908: 'UPF2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'UPF2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.437 (Fisher's exact test), Q value = 0.76

Table S9791.  Gene #908: 'UPF2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
UPF2 MUTATED 2 6 8
UPF2 WILD-TYPE 87 154 130
'UPF2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.527 (Fisher's exact test), Q value = 0.85

Table S9792.  Gene #908: 'UPF2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
UPF2 MUTATED 9 6 1
UPF2 WILD-TYPE 173 127 71
'UPF2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00923 (Fisher's exact test), Q value = 0.09

Table S9793.  Gene #908: 'UPF2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
UPF2 MUTATED 0 7 6 6
UPF2 WILD-TYPE 112 89 86 180

Figure S2695.  Get High-res Image Gene #908: 'UPF2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'UPF2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00538 (Fisher's exact test), Q value = 0.066

Table S9794.  Gene #908: 'UPF2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
UPF2 MUTATED 1 4 5 1 2 0 6
UPF2 WILD-TYPE 59 46 44 39 61 125 93

Figure S2696.  Get High-res Image Gene #908: 'UPF2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'UPF2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.288 (Fisher's exact test), Q value = 0.62

Table S9795.  Gene #908: 'UPF2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
UPF2 MUTATED 6 4 0 8
UPF2 WILD-TYPE 124 74 68 188
'UPF2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0977 (Fisher's exact test), Q value = 0.34

Table S9796.  Gene #908: 'UPF2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
UPF2 MUTATED 2 5 1 1 6 0 0 1 2
UPF2 WILD-TYPE 38 57 27 79 63 48 43 27 72
'UPF2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0866 (Fisher's exact test), Q value = 0.32

Table S9797.  Gene #908: 'UPF2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
UPF2 MUTATED 0 1 0 2
UPF2 WILD-TYPE 33 30 27 17
'UPF2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.376 (Fisher's exact test), Q value = 0.71

Table S9798.  Gene #908: 'UPF2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
UPF2 MUTATED 2 1 0 0
UPF2 WILD-TYPE 52 9 24 22
'DCUN1D3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.85 (Fisher's exact test), Q value = 1

Table S9799.  Gene #909: 'DCUN1D3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
DCUN1D3 MUTATED 3 2 2 0
DCUN1D3 WILD-TYPE 175 181 99 20
'DCUN1D3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.864 (Fisher's exact test), Q value = 1

Table S9800.  Gene #909: 'DCUN1D3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
DCUN1D3 MUTATED 1 2 2
DCUN1D3 WILD-TYPE 86 78 98
'DCUN1D3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.704 (Fisher's exact test), Q value = 0.98

Table S9801.  Gene #909: 'DCUN1D3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
DCUN1D3 MUTATED 2 2 3
DCUN1D3 WILD-TYPE 87 158 135
'DCUN1D3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.681 (Fisher's exact test), Q value = 0.96

Table S9802.  Gene #909: 'DCUN1D3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
DCUN1D3 MUTATED 4 3 0
DCUN1D3 WILD-TYPE 178 130 72
'DCUN1D3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.834 (Fisher's exact test), Q value = 1

Table S9803.  Gene #909: 'DCUN1D3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
DCUN1D3 MUTATED 2 2 1 2
DCUN1D3 WILD-TYPE 110 94 91 184
'DCUN1D3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0741 (Fisher's exact test), Q value = 0.29

Table S9804.  Gene #909: 'DCUN1D3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
DCUN1D3 MUTATED 3 0 1 1 0 0 2
DCUN1D3 WILD-TYPE 57 50 48 39 63 125 97
'DCUN1D3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.449 (Fisher's exact test), Q value = 0.77

Table S9805.  Gene #909: 'DCUN1D3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
DCUN1D3 MUTATED 3 1 1 1
DCUN1D3 WILD-TYPE 127 77 67 195
'DCUN1D3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0796 (Fisher's exact test), Q value = 0.3

Table S9806.  Gene #909: 'DCUN1D3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
DCUN1D3 MUTATED 1 1 2 0 2 0 0 0 0
DCUN1D3 WILD-TYPE 39 61 26 80 67 48 43 28 74
'GPR115 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.487 (Fisher's exact test), Q value = 0.81

Table S9807.  Gene #910: 'GPR115 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
GPR115 MUTATED 3 1 1 1
GPR115 WILD-TYPE 43 57 63 42
'GPR115 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.242 (Fisher's exact test), Q value = 0.57

Table S9808.  Gene #910: 'GPR115 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
GPR115 MUTATED 3 1 2
GPR115 WILD-TYPE 48 82 75
'GPR115 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.166 (Fisher's exact test), Q value = 0.46

Table S9809.  Gene #910: 'GPR115 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
GPR115 MUTATED 11 5 3 2
GPR115 WILD-TYPE 167 178 98 18
'GPR115 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.529 (Fisher's exact test), Q value = 0.85

Table S9810.  Gene #910: 'GPR115 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
GPR115 MUTATED 5 3 8
GPR115 WILD-TYPE 82 77 92
'GPR115 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.866 (Fisher's exact test), Q value = 1

Table S9811.  Gene #910: 'GPR115 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
GPR115 MUTATED 3 8 7
GPR115 WILD-TYPE 86 152 131
'GPR115 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.456 (Fisher's exact test), Q value = 0.78

Table S9812.  Gene #910: 'GPR115 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
GPR115 MUTATED 6 8 4
GPR115 WILD-TYPE 176 125 68
'GPR115 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.469 (Fisher's exact test), Q value = 0.8

Table S9813.  Gene #910: 'GPR115 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
GPR115 MUTATED 3 7 4 8
GPR115 WILD-TYPE 109 89 88 178
'GPR115 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.524 (Fisher's exact test), Q value = 0.85

Table S9814.  Gene #910: 'GPR115 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
GPR115 MUTATED 3 2 5 2 3 3 4
GPR115 WILD-TYPE 57 48 44 38 60 122 95
'GPR115 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.765 (Fisher's exact test), Q value = 1

Table S9815.  Gene #910: 'GPR115 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
GPR115 MUTATED 8 4 2 8
GPR115 WILD-TYPE 122 74 66 188
'GPR115 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.343 (Fisher's exact test), Q value = 0.67

Table S9816.  Gene #910: 'GPR115 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
GPR115 MUTATED 3 3 0 5 6 0 1 0 4
GPR115 WILD-TYPE 37 59 28 75 63 48 42 28 70
'GPR115 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.724 (Fisher's exact test), Q value = 0.99

Table S9817.  Gene #910: 'GPR115 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
GPR115 MUTATED 2 1 1 2
GPR115 WILD-TYPE 31 30 26 17
'GPR115 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.921 (Fisher's exact test), Q value = 1

Table S9818.  Gene #910: 'GPR115 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
GPR115 MUTATED 3 0 2 1
GPR115 WILD-TYPE 51 10 22 21
'NLK MUTATION STATUS' versus 'CN_CNMF'

P value = 0.386 (Fisher's exact test), Q value = 0.71

Table S9819.  Gene #911: 'NLK MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
NLK MUTATED 5 2 4 0
NLK WILD-TYPE 173 181 97 20
'NLK MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.367 (Fisher's exact test), Q value = 0.7

Table S9820.  Gene #911: 'NLK MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
NLK MUTATED 4 1 5
NLK WILD-TYPE 83 79 95
'NLK MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0326 (Fisher's exact test), Q value = 0.18

Table S9821.  Gene #911: 'NLK MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
NLK MUTATED 0 2 7
NLK WILD-TYPE 89 158 131

Figure S2697.  Get High-res Image Gene #911: 'NLK MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'NLK MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.188 (Fisher's exact test), Q value = 0.49

Table S9822.  Gene #911: 'NLK MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
NLK MUTATED 7 1 1
NLK WILD-TYPE 175 132 71
'NLK MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0106 (Fisher's exact test), Q value = 0.099

Table S9823.  Gene #911: 'NLK MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
NLK MUTATED 1 6 3 1
NLK WILD-TYPE 111 90 89 185

Figure S2698.  Get High-res Image Gene #911: 'NLK MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'NLK MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0102 (Fisher's exact test), Q value = 0.097

Table S9824.  Gene #911: 'NLK MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
NLK MUTATED 1 3 4 0 2 1 0
NLK WILD-TYPE 59 47 45 40 61 124 99

Figure S2699.  Get High-res Image Gene #911: 'NLK MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'NLK MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0014 (Fisher's exact test), Q value = 0.031

Table S9825.  Gene #911: 'NLK MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
NLK MUTATED 8 2 1 0
NLK WILD-TYPE 122 76 67 196

Figure S2700.  Get High-res Image Gene #911: 'NLK MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'NLK MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.547 (Fisher's exact test), Q value = 0.87

Table S9826.  Gene #911: 'NLK MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
NLK MUTATED 2 3 0 2 3 0 0 0 1
NLK WILD-TYPE 38 59 28 78 66 48 43 28 73
'ARHGAP32 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0014 (Fisher's exact test), Q value = 0.031

Table S9827.  Gene #912: 'ARHGAP32 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ARHGAP32 MUTATED 2 0 0 5
ARHGAP32 WILD-TYPE 44 58 64 38

Figure S2701.  Get High-res Image Gene #912: 'ARHGAP32 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'ARHGAP32 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.016 (Fisher's exact test), Q value = 0.13

Table S9828.  Gene #912: 'ARHGAP32 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ARHGAP32 MUTATED 5 1 1
ARHGAP32 WILD-TYPE 46 82 76

Figure S2702.  Get High-res Image Gene #912: 'ARHGAP32 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'ARHGAP32 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0208 (Fisher's exact test), Q value = 0.15

Table S9829.  Gene #912: 'ARHGAP32 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ARHGAP32 MUTATED 17 5 3 0
ARHGAP32 WILD-TYPE 161 178 98 20

Figure S2703.  Get High-res Image Gene #912: 'ARHGAP32 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ARHGAP32 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00951 (Fisher's exact test), Q value = 0.092

Table S9830.  Gene #912: 'ARHGAP32 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ARHGAP32 MUTATED 1 6 12
ARHGAP32 WILD-TYPE 86 74 88

Figure S2704.  Get High-res Image Gene #912: 'ARHGAP32 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'ARHGAP32 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.966 (Fisher's exact test), Q value = 1

Table S9831.  Gene #912: 'ARHGAP32 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ARHGAP32 MUTATED 6 10 10
ARHGAP32 WILD-TYPE 83 150 128
'ARHGAP32 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.862 (Fisher's exact test), Q value = 1

Table S9832.  Gene #912: 'ARHGAP32 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ARHGAP32 MUTATED 11 10 5
ARHGAP32 WILD-TYPE 171 123 67
'ARHGAP32 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.13 (Fisher's exact test), Q value = 0.4

Table S9833.  Gene #912: 'ARHGAP32 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ARHGAP32 MUTATED 4 10 3 9
ARHGAP32 WILD-TYPE 108 86 89 177
'ARHGAP32 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0112 (Fisher's exact test), Q value = 0.1

Table S9834.  Gene #912: 'ARHGAP32 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ARHGAP32 MUTATED 3 5 5 3 1 1 8
ARHGAP32 WILD-TYPE 57 45 44 37 62 124 91

Figure S2705.  Get High-res Image Gene #912: 'ARHGAP32 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ARHGAP32 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.623 (Fisher's exact test), Q value = 0.92

Table S9835.  Gene #912: 'ARHGAP32 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ARHGAP32 MUTATED 9 2 3 10
ARHGAP32 WILD-TYPE 121 76 65 186
'ARHGAP32 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00235 (Fisher's exact test), Q value = 0.042

Table S9836.  Gene #912: 'ARHGAP32 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ARHGAP32 MUTATED 7 2 2 2 8 0 1 0 2
ARHGAP32 WILD-TYPE 33 60 26 78 61 48 42 28 72

Figure S2706.  Get High-res Image Gene #912: 'ARHGAP32 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'PIK3R4 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0356 (Fisher's exact test), Q value = 0.2

Table S9837.  Gene #913: 'PIK3R4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
PIK3R4 MUTATED 3 0 1 4
PIK3R4 WILD-TYPE 43 58 63 39

Figure S2707.  Get High-res Image Gene #913: 'PIK3R4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'PIK3R4 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.063 (Fisher's exact test), Q value = 0.27

Table S9838.  Gene #913: 'PIK3R4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
PIK3R4 MUTATED 5 2 1
PIK3R4 WILD-TYPE 46 81 76
'PIK3R4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00806 (Fisher's exact test), Q value = 0.084

Table S9839.  Gene #913: 'PIK3R4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
PIK3R4 MUTATED 12 1 4 0
PIK3R4 WILD-TYPE 166 182 97 20

Figure S2708.  Get High-res Image Gene #913: 'PIK3R4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'PIK3R4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.582 (Fisher's exact test), Q value = 0.89

Table S9840.  Gene #913: 'PIK3R4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
PIK3R4 MUTATED 2 2 5
PIK3R4 WILD-TYPE 85 78 95
'PIK3R4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.69 (Fisher's exact test), Q value = 0.97

Table S9841.  Gene #913: 'PIK3R4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
PIK3R4 MUTATED 2 7 5
PIK3R4 WILD-TYPE 87 153 133
'PIK3R4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.769 (Fisher's exact test), Q value = 1

Table S9842.  Gene #913: 'PIK3R4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
PIK3R4 MUTATED 8 4 2
PIK3R4 WILD-TYPE 174 129 70
'PIK3R4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0444 (Fisher's exact test), Q value = 0.22

Table S9843.  Gene #913: 'PIK3R4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
PIK3R4 MUTATED 3 7 0 7
PIK3R4 WILD-TYPE 109 89 92 179

Figure S2709.  Get High-res Image Gene #913: 'PIK3R4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'PIK3R4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0331 (Fisher's exact test), Q value = 0.19

Table S9844.  Gene #913: 'PIK3R4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
PIK3R4 MUTATED 2 0 4 2 1 1 7
PIK3R4 WILD-TYPE 58 50 45 38 62 124 92

Figure S2710.  Get High-res Image Gene #913: 'PIK3R4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'PIK3R4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.542 (Fisher's exact test), Q value = 0.86

Table S9845.  Gene #913: 'PIK3R4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
PIK3R4 MUTATED 6 1 1 6
PIK3R4 WILD-TYPE 124 77 67 190
'PIK3R4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.456 (Fisher's exact test), Q value = 0.78

Table S9846.  Gene #913: 'PIK3R4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
PIK3R4 MUTATED 1 3 1 4 4 0 0 0 1
PIK3R4 WILD-TYPE 39 59 27 76 65 48 43 28 73
'PIK3R4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.423 (Fisher's exact test), Q value = 0.75

Table S9847.  Gene #913: 'PIK3R4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
PIK3R4 MUTATED 0 1 2 1
PIK3R4 WILD-TYPE 33 30 25 18
'PIK3R4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0152 (Fisher's exact test), Q value = 0.12

Table S9848.  Gene #913: 'PIK3R4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
PIK3R4 MUTATED 0 1 3 0
PIK3R4 WILD-TYPE 54 9 21 22

Figure S2711.  Get High-res Image Gene #913: 'PIK3R4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

'GNAS MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.206 (Fisher's exact test), Q value = 0.51

Table S9849.  Gene #914: 'GNAS MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
GNAS MUTATED 2 0 3 3
GNAS WILD-TYPE 44 58 61 40
'GNAS MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.199 (Fisher's exact test), Q value = 0.5

Table S9850.  Gene #914: 'GNAS MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
GNAS MUTATED 2 1 5
GNAS WILD-TYPE 49 82 72
'GNAS MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0317 (Fisher's exact test), Q value = 0.18

Table S9851.  Gene #914: 'GNAS MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
GNAS MUTATED 19 6 7 2
GNAS WILD-TYPE 159 177 94 18

Figure S2712.  Get High-res Image Gene #914: 'GNAS MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'GNAS MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.504 (Fisher's exact test), Q value = 0.83

Table S9852.  Gene #914: 'GNAS MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
GNAS MUTATED 9 6 13
GNAS WILD-TYPE 78 74 87
'GNAS MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.308 (Fisher's exact test), Q value = 0.64

Table S9853.  Gene #914: 'GNAS MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
GNAS MUTATED 4 12 14
GNAS WILD-TYPE 85 148 124
'GNAS MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.173 (Fisher's exact test), Q value = 0.47

Table S9854.  Gene #914: 'GNAS MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
GNAS MUTATED 15 13 2
GNAS WILD-TYPE 167 120 70
'GNAS MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00036 (Fisher's exact test), Q value = 0.012

Table S9855.  Gene #914: 'GNAS MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
GNAS MUTATED 6 17 7 6
GNAS WILD-TYPE 106 79 85 180

Figure S2713.  Get High-res Image Gene #914: 'GNAS MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'GNAS MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 2e-05 (Fisher's exact test), Q value = 0.0017

Table S9856.  Gene #914: 'GNAS MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
GNAS MUTATED 3 6 13 4 2 2 6
GNAS WILD-TYPE 57 44 36 36 61 123 93

Figure S2714.  Get High-res Image Gene #914: 'GNAS MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'GNAS MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0224 (Fisher's exact test), Q value = 0.15

Table S9857.  Gene #914: 'GNAS MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
GNAS MUTATED 18 5 2 11
GNAS WILD-TYPE 112 73 66 185

Figure S2715.  Get High-res Image Gene #914: 'GNAS MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'GNAS MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0128 (Fisher's exact test), Q value = 0.11

Table S9858.  Gene #914: 'GNAS MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
GNAS MUTATED 4 5 5 4 10 2 5 0 1
GNAS WILD-TYPE 36 57 23 76 59 46 38 28 73

Figure S2716.  Get High-res Image Gene #914: 'GNAS MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'GNAS MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00654 (Fisher's exact test), Q value = 0.074

Table S9859.  Gene #914: 'GNAS MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
GNAS MUTATED 3 2 1 7
GNAS WILD-TYPE 30 29 26 12

Figure S2717.  Get High-res Image Gene #914: 'GNAS MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'GNAS MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.077 (Fisher's exact test), Q value = 0.3

Table S9860.  Gene #914: 'GNAS MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
GNAS MUTATED 8 0 5 0
GNAS WILD-TYPE 46 10 19 22
'TRIB1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.234 (Fisher's exact test), Q value = 0.55

Table S9861.  Gene #915: 'TRIB1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
TRIB1 MUTATED 6 1 2 0
TRIB1 WILD-TYPE 172 182 99 20
'TRIB1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.716 (Fisher's exact test), Q value = 0.99

Table S9862.  Gene #915: 'TRIB1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
TRIB1 MUTATED 3 1 3
TRIB1 WILD-TYPE 84 79 97
'TRIB1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S9863.  Gene #915: 'TRIB1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
TRIB1 MUTATED 1 2 2
TRIB1 WILD-TYPE 88 158 136
'TRIB1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.853 (Fisher's exact test), Q value = 1

Table S9864.  Gene #915: 'TRIB1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
TRIB1 MUTATED 3 1 1
TRIB1 WILD-TYPE 179 132 71
'TRIB1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.26 (Fisher's exact test), Q value = 0.58

Table S9865.  Gene #915: 'TRIB1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
TRIB1 MUTATED 1 4 2 2
TRIB1 WILD-TYPE 111 92 90 184
'TRIB1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00294 (Fisher's exact test), Q value = 0.049

Table S9866.  Gene #915: 'TRIB1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
TRIB1 MUTATED 2 0 4 2 0 0 1
TRIB1 WILD-TYPE 58 50 45 38 63 125 98

Figure S2718.  Get High-res Image Gene #915: 'TRIB1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'TRIB1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.502 (Fisher's exact test), Q value = 0.83

Table S9867.  Gene #915: 'TRIB1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
TRIB1 MUTATED 4 2 1 2
TRIB1 WILD-TYPE 126 76 67 194
'TRIB1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.506 (Fisher's exact test), Q value = 0.83

Table S9868.  Gene #915: 'TRIB1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
TRIB1 MUTATED 2 1 0 2 3 1 0 0 0
TRIB1 WILD-TYPE 38 61 28 78 66 47 43 28 74
'TRIB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.596 (Fisher's exact test), Q value = 0.9

Table S9869.  Gene #915: 'TRIB1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
TRIB1 MUTATED 2 0 1 1
TRIB1 WILD-TYPE 31 31 26 18
'TRIB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S9870.  Gene #915: 'TRIB1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
TRIB1 MUTATED 2 0 1 1
TRIB1 WILD-TYPE 52 10 23 21
'VWCE MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0636 (Fisher's exact test), Q value = 0.27

Table S9871.  Gene #916: 'VWCE MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
VWCE MUTATED 1 0 0 2
VWCE WILD-TYPE 45 58 64 41
'VWCE MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.253 (Fisher's exact test), Q value = 0.58

Table S9872.  Gene #916: 'VWCE MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
VWCE MUTATED 2 1 0
VWCE WILD-TYPE 49 82 77
'VWCE MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0884 (Fisher's exact test), Q value = 0.32

Table S9873.  Gene #916: 'VWCE MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
VWCE MUTATED 10 2 3 0
VWCE WILD-TYPE 168 181 98 20
'VWCE MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.368 (Fisher's exact test), Q value = 0.7

Table S9874.  Gene #916: 'VWCE MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
VWCE MUTATED 3 2 7
VWCE WILD-TYPE 84 78 93
'VWCE MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.298 (Fisher's exact test), Q value = 0.63

Table S9875.  Gene #916: 'VWCE MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
VWCE MUTATED 1 5 7
VWCE WILD-TYPE 88 155 131
'VWCE MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.706 (Fisher's exact test), Q value = 0.98

Table S9876.  Gene #916: 'VWCE MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
VWCE MUTATED 7 5 1
VWCE WILD-TYPE 175 128 71
'VWCE MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.2 (Fisher's exact test), Q value = 0.5

Table S9877.  Gene #916: 'VWCE MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
VWCE MUTATED 4 6 2 3
VWCE WILD-TYPE 108 90 90 183
'VWCE MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.022 (Fisher's exact test), Q value = 0.15

Table S9878.  Gene #916: 'VWCE MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
VWCE MUTATED 2 2 6 1 1 1 2
VWCE WILD-TYPE 58 48 43 39 62 124 97

Figure S2719.  Get High-res Image Gene #916: 'VWCE MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'VWCE MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.102 (Fisher's exact test), Q value = 0.35

Table S9879.  Gene #916: 'VWCE MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
VWCE MUTATED 8 3 1 3
VWCE WILD-TYPE 122 75 67 193
'VWCE MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.42 (Fisher's exact test), Q value = 0.75

Table S9880.  Gene #916: 'VWCE MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
VWCE MUTATED 0 4 0 2 4 3 1 0 1
VWCE WILD-TYPE 40 58 28 78 65 45 42 28 73
'VWCE MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.465 (Fisher's exact test), Q value = 0.79

Table S9881.  Gene #916: 'VWCE MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
VWCE MUTATED 1 0 2 1
VWCE WILD-TYPE 32 31 25 18
'VWCE MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0337 (Fisher's exact test), Q value = 0.19

Table S9882.  Gene #916: 'VWCE MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
VWCE MUTATED 0 0 3 1
VWCE WILD-TYPE 54 10 21 21

Figure S2720.  Get High-res Image Gene #916: 'VWCE MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

'JMJD6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.462 (Fisher's exact test), Q value = 0.79

Table S9883.  Gene #917: 'JMJD6 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
JMJD6 MUTATED 6 2 1 0
JMJD6 WILD-TYPE 172 181 100 20
'JMJD6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.635 (Fisher's exact test), Q value = 0.93

Table S9884.  Gene #917: 'JMJD6 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
JMJD6 MUTATED 2 1 4
JMJD6 WILD-TYPE 85 79 96
'JMJD6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.904 (Fisher's exact test), Q value = 1

Table S9885.  Gene #917: 'JMJD6 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
JMJD6 MUTATED 1 4 3
JMJD6 WILD-TYPE 88 156 135
'JMJD6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.896 (Fisher's exact test), Q value = 1

Table S9886.  Gene #917: 'JMJD6 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
JMJD6 MUTATED 5 2 1
JMJD6 WILD-TYPE 177 131 71
'JMJD6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.236 (Fisher's exact test), Q value = 0.56

Table S9887.  Gene #917: 'JMJD6 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
JMJD6 MUTATED 1 2 4 2
JMJD6 WILD-TYPE 111 94 88 184
'JMJD6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.109 (Fisher's exact test), Q value = 0.37

Table S9888.  Gene #917: 'JMJD6 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
JMJD6 MUTATED 1 1 3 0 2 0 2
JMJD6 WILD-TYPE 59 49 46 40 61 125 97
'JMJD6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0197 (Fisher's exact test), Q value = 0.14

Table S9889.  Gene #917: 'JMJD6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
JMJD6 MUTATED 7 0 0 2
JMJD6 WILD-TYPE 123 78 68 194

Figure S2721.  Get High-res Image Gene #917: 'JMJD6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'JMJD6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.276 (Fisher's exact test), Q value = 0.6

Table S9890.  Gene #917: 'JMJD6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
JMJD6 MUTATED 0 1 2 2 3 1 0 0 0
JMJD6 WILD-TYPE 40 61 26 78 66 47 43 28 74
'JMJD6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.873 (Fisher's exact test), Q value = 1

Table S9891.  Gene #917: 'JMJD6 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
JMJD6 MUTATED 1 1 0 1
JMJD6 WILD-TYPE 32 30 27 18
'JMJD6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.842 (Fisher's exact test), Q value = 1

Table S9892.  Gene #917: 'JMJD6 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
JMJD6 MUTATED 2 0 0 1
JMJD6 WILD-TYPE 52 10 24 21
'AGFG2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0729 (Fisher's exact test), Q value = 0.29

Table S9893.  Gene #918: 'AGFG2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
AGFG2 MUTATED 2 0 0 2
AGFG2 WILD-TYPE 44 58 64 41
'AGFG2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0399 (Fisher's exact test), Q value = 0.21

Table S9894.  Gene #918: 'AGFG2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
AGFG2 MUTATED 3 0 1
AGFG2 WILD-TYPE 48 83 76

Figure S2722.  Get High-res Image Gene #918: 'AGFG2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'AGFG2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.015 (Fisher's exact test), Q value = 0.12

Table S9895.  Gene #918: 'AGFG2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
AGFG2 MUTATED 10 2 0 0
AGFG2 WILD-TYPE 168 181 101 20

Figure S2723.  Get High-res Image Gene #918: 'AGFG2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'AGFG2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.818 (Fisher's exact test), Q value = 1

Table S9896.  Gene #918: 'AGFG2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
AGFG2 MUTATED 2 2 4
AGFG2 WILD-TYPE 85 78 96
'AGFG2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.292 (Fisher's exact test), Q value = 0.62

Table S9897.  Gene #918: 'AGFG2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
AGFG2 MUTATED 4 2 4
AGFG2 WILD-TYPE 85 158 134
'AGFG2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0917 (Fisher's exact test), Q value = 0.33

Table S9898.  Gene #918: 'AGFG2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
AGFG2 MUTATED 5 1 4
AGFG2 WILD-TYPE 177 132 68
'AGFG2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.435 (Fisher's exact test), Q value = 0.76

Table S9899.  Gene #918: 'AGFG2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
AGFG2 MUTATED 1 4 3 4
AGFG2 WILD-TYPE 111 92 89 182
'AGFG2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0202 (Fisher's exact test), Q value = 0.14

Table S9900.  Gene #918: 'AGFG2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
AGFG2 MUTATED 3 0 4 1 1 0 3
AGFG2 WILD-TYPE 57 50 45 39 62 125 96

Figure S2724.  Get High-res Image Gene #918: 'AGFG2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'AGFG2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.5 (Fisher's exact test), Q value = 0.83

Table S9901.  Gene #918: 'AGFG2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
AGFG2 MUTATED 5 2 0 5
AGFG2 WILD-TYPE 125 76 68 191
'AGFG2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0788 (Fisher's exact test), Q value = 0.3

Table S9902.  Gene #918: 'AGFG2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
AGFG2 MUTATED 2 2 1 0 5 1 1 0 0
AGFG2 WILD-TYPE 38 60 27 80 64 47 42 28 74
'AGFG2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.873 (Fisher's exact test), Q value = 1

Table S9903.  Gene #918: 'AGFG2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
AGFG2 MUTATED 1 1 0 1
AGFG2 WILD-TYPE 32 30 27 18
'AGFG2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.842 (Fisher's exact test), Q value = 1

Table S9904.  Gene #918: 'AGFG2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
AGFG2 MUTATED 2 0 0 1
AGFG2 WILD-TYPE 52 10 24 21
'VWA5A MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0334 (Fisher's exact test), Q value = 0.19

Table S9905.  Gene #919: 'VWA5A MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
VWA5A MUTATED 2 1 0 4
VWA5A WILD-TYPE 44 57 64 39

Figure S2725.  Get High-res Image Gene #919: 'VWA5A MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'VWA5A MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.552 (Fisher's exact test), Q value = 0.87

Table S9906.  Gene #919: 'VWA5A MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
VWA5A MUTATED 3 2 2
VWA5A WILD-TYPE 48 81 75
'VWA5A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0461 (Fisher's exact test), Q value = 0.23

Table S9907.  Gene #919: 'VWA5A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
VWA5A MUTATED 11 2 2 0
VWA5A WILD-TYPE 167 181 99 20

Figure S2726.  Get High-res Image Gene #919: 'VWA5A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'VWA5A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.321 (Fisher's exact test), Q value = 0.65

Table S9908.  Gene #919: 'VWA5A MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
VWA5A MUTATED 1 2 5
VWA5A WILD-TYPE 86 78 95
'VWA5A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S9909.  Gene #919: 'VWA5A MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
VWA5A MUTATED 3 5 5
VWA5A WILD-TYPE 86 155 133
'VWA5A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.57 (Fisher's exact test), Q value = 0.88

Table S9910.  Gene #919: 'VWA5A MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
VWA5A MUTATED 6 6 1
VWA5A WILD-TYPE 176 127 71
'VWA5A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.905 (Fisher's exact test), Q value = 1

Table S9911.  Gene #919: 'VWA5A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
VWA5A MUTATED 3 4 2 6
VWA5A WILD-TYPE 109 92 90 180
'VWA5A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.155 (Fisher's exact test), Q value = 0.44

Table S9912.  Gene #919: 'VWA5A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
VWA5A MUTATED 2 0 3 1 2 1 6
VWA5A WILD-TYPE 58 50 46 39 61 124 93
'VWA5A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.202 (Fisher's exact test), Q value = 0.51

Table S9913.  Gene #919: 'VWA5A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
VWA5A MUTATED 3 2 0 10
VWA5A WILD-TYPE 127 76 68 186
'VWA5A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00126 (Fisher's exact test), Q value = 0.029

Table S9914.  Gene #919: 'VWA5A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
VWA5A MUTATED 0 2 1 2 9 0 0 1 0
VWA5A WILD-TYPE 40 60 27 78 60 48 43 27 74

Figure S2727.  Get High-res Image Gene #919: 'VWA5A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'VWA5A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0841 (Fisher's exact test), Q value = 0.31

Table S9915.  Gene #919: 'VWA5A MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
VWA5A MUTATED 0 1 0 2
VWA5A WILD-TYPE 33 30 27 17
'VWA5A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0606 (Fisher's exact test), Q value = 0.27

Table S9916.  Gene #919: 'VWA5A MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
VWA5A MUTATED 0 1 2 0
VWA5A WILD-TYPE 54 9 22 22
'BAIAP2L1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00886 (Fisher's exact test), Q value = 0.088

Table S9917.  Gene #920: 'BAIAP2L1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
BAIAP2L1 MUTATED 11 1 1 0
BAIAP2L1 WILD-TYPE 167 182 100 20

Figure S2728.  Get High-res Image Gene #920: 'BAIAP2L1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'BAIAP2L1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0369 (Fisher's exact test), Q value = 0.2

Table S9918.  Gene #920: 'BAIAP2L1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
BAIAP2L1 MUTATED 3 0 7
BAIAP2L1 WILD-TYPE 84 80 93

Figure S2729.  Get High-res Image Gene #920: 'BAIAP2L1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'BAIAP2L1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.512 (Fisher's exact test), Q value = 0.83

Table S9919.  Gene #920: 'BAIAP2L1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
BAIAP2L1 MUTATED 1 3 5
BAIAP2L1 WILD-TYPE 88 157 133
'BAIAP2L1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S9920.  Gene #920: 'BAIAP2L1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
BAIAP2L1 MUTATED 5 3 1
BAIAP2L1 WILD-TYPE 177 130 71
'BAIAP2L1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0138 (Fisher's exact test), Q value = 0.12

Table S9921.  Gene #920: 'BAIAP2L1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
BAIAP2L1 MUTATED 0 6 4 3
BAIAP2L1 WILD-TYPE 112 90 88 183

Figure S2730.  Get High-res Image Gene #920: 'BAIAP2L1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'BAIAP2L1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 2e-05 (Fisher's exact test), Q value = 0.0017

Table S9922.  Gene #920: 'BAIAP2L1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
BAIAP2L1 MUTATED 0 2 8 0 0 0 3
BAIAP2L1 WILD-TYPE 60 48 41 40 63 125 96

Figure S2731.  Get High-res Image Gene #920: 'BAIAP2L1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'BAIAP2L1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.271 (Fisher's exact test), Q value = 0.6

Table S9923.  Gene #920: 'BAIAP2L1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
BAIAP2L1 MUTATED 6 1 0 6
BAIAP2L1 WILD-TYPE 124 77 68 190
'BAIAP2L1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0363 (Fisher's exact test), Q value = 0.2

Table S9924.  Gene #920: 'BAIAP2L1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
BAIAP2L1 MUTATED 0 2 0 1 7 0 2 0 1
BAIAP2L1 WILD-TYPE 40 60 28 79 62 48 41 28 73

Figure S2732.  Get High-res Image Gene #920: 'BAIAP2L1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'BAIAP2L1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0242 (Fisher's exact test), Q value = 0.16

Table S9925.  Gene #920: 'BAIAP2L1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
BAIAP2L1 MUTATED 1 0 0 3
BAIAP2L1 WILD-TYPE 32 31 27 16

Figure S2733.  Get High-res Image Gene #920: 'BAIAP2L1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'BAIAP2L1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.869 (Fisher's exact test), Q value = 1

Table S9926.  Gene #920: 'BAIAP2L1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
BAIAP2L1 MUTATED 3 0 1 0
BAIAP2L1 WILD-TYPE 51 10 23 22
'BRD4 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.178 (Fisher's exact test), Q value = 0.48

Table S9927.  Gene #921: 'BRD4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
BRD4 MUTATED 3 0 1 1
BRD4 WILD-TYPE 43 58 63 42
'BRD4 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0183 (Fisher's exact test), Q value = 0.14

Table S9928.  Gene #921: 'BRD4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
BRD4 MUTATED 4 1 0
BRD4 WILD-TYPE 47 82 77

Figure S2734.  Get High-res Image Gene #921: 'BRD4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'BRD4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00234 (Fisher's exact test), Q value = 0.042

Table S9929.  Gene #921: 'BRD4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
BRD4 MUTATED 14 2 2 2
BRD4 WILD-TYPE 164 181 99 18

Figure S2735.  Get High-res Image Gene #921: 'BRD4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'BRD4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.283 (Fisher's exact test), Q value = 0.61

Table S9930.  Gene #921: 'BRD4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
BRD4 MUTATED 6 2 8
BRD4 WILD-TYPE 81 78 92
'BRD4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0828 (Fisher's exact test), Q value = 0.31

Table S9931.  Gene #921: 'BRD4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
BRD4 MUTATED 2 5 11
BRD4 WILD-TYPE 87 155 127
'BRD4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.733 (Fisher's exact test), Q value = 1

Table S9932.  Gene #921: 'BRD4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
BRD4 MUTATED 10 6 2
BRD4 WILD-TYPE 172 127 70
'BRD4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.546 (Fisher's exact test), Q value = 0.86

Table S9933.  Gene #921: 'BRD4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
BRD4 MUTATED 3 6 5 7
BRD4 WILD-TYPE 109 90 87 179
'BRD4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00305 (Fisher's exact test), Q value = 0.049

Table S9934.  Gene #921: 'BRD4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
BRD4 MUTATED 2 2 8 2 0 2 5
BRD4 WILD-TYPE 58 48 41 38 63 123 94

Figure S2736.  Get High-res Image Gene #921: 'BRD4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'BRD4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.384 (Fisher's exact test), Q value = 0.71

Table S9935.  Gene #921: 'BRD4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
BRD4 MUTATED 9 3 1 8
BRD4 WILD-TYPE 121 75 67 188
'BRD4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.375 (Fisher's exact test), Q value = 0.7

Table S9936.  Gene #921: 'BRD4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
BRD4 MUTATED 1 5 1 5 5 0 2 1 1
BRD4 WILD-TYPE 39 57 27 75 64 48 41 27 73
'BRD4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0732 (Fisher's exact test), Q value = 0.29

Table S9937.  Gene #921: 'BRD4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
BRD4 MUTATED 1 0 2 3
BRD4 WILD-TYPE 32 31 25 16
'BRD4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.849 (Fisher's exact test), Q value = 1

Table S9938.  Gene #921: 'BRD4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
BRD4 MUTATED 3 0 1 2
BRD4 WILD-TYPE 51 10 23 20
'GUCY1A3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.186 (Fisher's exact test), Q value = 0.49

Table S9939.  Gene #922: 'GUCY1A3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
GUCY1A3 MUTATED 4 1 2 4
GUCY1A3 WILD-TYPE 42 57 62 39
'GUCY1A3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.046 (Fisher's exact test), Q value = 0.23

Table S9940.  Gene #922: 'GUCY1A3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
GUCY1A3 MUTATED 5 1 5
GUCY1A3 WILD-TYPE 46 82 72

Figure S2737.  Get High-res Image Gene #922: 'GUCY1A3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'GUCY1A3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00636 (Fisher's exact test), Q value = 0.073

Table S9941.  Gene #922: 'GUCY1A3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
GUCY1A3 MUTATED 15 7 1 3
GUCY1A3 WILD-TYPE 163 176 100 17

Figure S2738.  Get High-res Image Gene #922: 'GUCY1A3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'GUCY1A3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.658 (Fisher's exact test), Q value = 0.94

Table S9942.  Gene #922: 'GUCY1A3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
GUCY1A3 MUTATED 3 5 6
GUCY1A3 WILD-TYPE 84 75 94
'GUCY1A3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.354 (Fisher's exact test), Q value = 0.68

Table S9943.  Gene #922: 'GUCY1A3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
GUCY1A3 MUTATED 3 12 6
GUCY1A3 WILD-TYPE 86 148 132
'GUCY1A3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.14 (Fisher's exact test), Q value = 0.42

Table S9944.  Gene #922: 'GUCY1A3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
GUCY1A3 MUTATED 6 11 4
GUCY1A3 WILD-TYPE 176 122 68
'GUCY1A3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.286 (Fisher's exact test), Q value = 0.62

Table S9945.  Gene #922: 'GUCY1A3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
GUCY1A3 MUTATED 5 8 2 11
GUCY1A3 WILD-TYPE 107 88 90 175
'GUCY1A3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0207 (Fisher's exact test), Q value = 0.15

Table S9946.  Gene #922: 'GUCY1A3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
GUCY1A3 MUTATED 4 2 5 1 3 1 10
GUCY1A3 WILD-TYPE 56 48 44 39 60 124 89

Figure S2739.  Get High-res Image Gene #922: 'GUCY1A3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'GUCY1A3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.68 (Fisher's exact test), Q value = 0.96

Table S9947.  Gene #922: 'GUCY1A3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
GUCY1A3 MUTATED 9 3 2 11
GUCY1A3 WILD-TYPE 121 75 66 185
'GUCY1A3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.011 (Fisher's exact test), Q value = 0.1

Table S9948.  Gene #922: 'GUCY1A3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
GUCY1A3 MUTATED 1 2 3 3 11 2 0 0 3
GUCY1A3 WILD-TYPE 39 60 25 77 58 46 43 28 71

Figure S2740.  Get High-res Image Gene #922: 'GUCY1A3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'GUCY1A3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.353 (Fisher's exact test), Q value = 0.68

Table S9949.  Gene #922: 'GUCY1A3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
GUCY1A3 MUTATED 2 1 1 3
GUCY1A3 WILD-TYPE 31 30 26 16
'GUCY1A3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.732 (Fisher's exact test), Q value = 1

Table S9950.  Gene #922: 'GUCY1A3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
GUCY1A3 MUTATED 3 1 2 1
GUCY1A3 WILD-TYPE 51 9 22 21
'MCF2L2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.387 (Fisher's exact test), Q value = 0.71

Table S9951.  Gene #923: 'MCF2L2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
MCF2L2 MUTATED 2 1 1 3
MCF2L2 WILD-TYPE 44 57 63 40
'MCF2L2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S9952.  Gene #923: 'MCF2L2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
MCF2L2 MUTATED 2 3 2
MCF2L2 WILD-TYPE 49 80 75
'MCF2L2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00019 (Fisher's exact test), Q value = 0.008

Table S9953.  Gene #923: 'MCF2L2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
MCF2L2 MUTATED 19 3 1 0
MCF2L2 WILD-TYPE 159 180 100 20

Figure S2741.  Get High-res Image Gene #923: 'MCF2L2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'MCF2L2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00548 (Fisher's exact test), Q value = 0.067

Table S9954.  Gene #923: 'MCF2L2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
MCF2L2 MUTATED 9 0 5
MCF2L2 WILD-TYPE 78 80 95

Figure S2742.  Get High-res Image Gene #923: 'MCF2L2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'MCF2L2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0448 (Fisher's exact test), Q value = 0.23

Table S9955.  Gene #923: 'MCF2L2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
MCF2L2 MUTATED 0 8 8
MCF2L2 WILD-TYPE 89 152 130

Figure S2743.  Get High-res Image Gene #923: 'MCF2L2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'MCF2L2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.469 (Fisher's exact test), Q value = 0.8

Table S9956.  Gene #923: 'MCF2L2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
MCF2L2 MUTATED 8 7 1
MCF2L2 WILD-TYPE 174 126 71
'MCF2L2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.25 (Fisher's exact test), Q value = 0.58

Table S9957.  Gene #923: 'MCF2L2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
MCF2L2 MUTATED 2 5 7 9
MCF2L2 WILD-TYPE 110 91 85 177
'MCF2L2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0523 (Fisher's exact test), Q value = 0.25

Table S9958.  Gene #923: 'MCF2L2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
MCF2L2 MUTATED 3 2 7 0 2 3 6
MCF2L2 WILD-TYPE 57 48 42 40 61 122 93
'MCF2L2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.587 (Fisher's exact test), Q value = 0.89

Table S9959.  Gene #923: 'MCF2L2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
MCF2L2 MUTATED 7 3 1 11
MCF2L2 WILD-TYPE 123 75 67 185
'MCF2L2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.198 (Fisher's exact test), Q value = 0.5

Table S9960.  Gene #923: 'MCF2L2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
MCF2L2 MUTATED 1 4 1 3 8 1 0 0 4
MCF2L2 WILD-TYPE 39 58 27 77 61 47 43 28 70
'MCF2L2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0245 (Fisher's exact test), Q value = 0.16

Table S9961.  Gene #923: 'MCF2L2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
MCF2L2 MUTATED 1 0 0 3
MCF2L2 WILD-TYPE 32 31 27 16

Figure S2744.  Get High-res Image Gene #923: 'MCF2L2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'MCF2L2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.87 (Fisher's exact test), Q value = 1

Table S9962.  Gene #923: 'MCF2L2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
MCF2L2 MUTATED 3 0 1 0
MCF2L2 WILD-TYPE 51 10 23 22
'DNAH17 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00064 (Fisher's exact test), Q value = 0.018

Table S9963.  Gene #924: 'DNAH17 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
DNAH17 MUTATED 23 7 2 0
DNAH17 WILD-TYPE 155 176 99 20

Figure S2745.  Get High-res Image Gene #924: 'DNAH17 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'DNAH17 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.173 (Fisher's exact test), Q value = 0.47

Table S9964.  Gene #924: 'DNAH17 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
DNAH17 MUTATED 11 5 15
DNAH17 WILD-TYPE 76 75 85
'DNAH17 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00874 (Fisher's exact test), Q value = 0.087

Table S9965.  Gene #924: 'DNAH17 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
DNAH17 MUTATED 6 5 17
DNAH17 WILD-TYPE 83 155 121

Figure S2746.  Get High-res Image Gene #924: 'DNAH17 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'DNAH17 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0466 (Fisher's exact test), Q value = 0.23

Table S9966.  Gene #924: 'DNAH17 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
DNAH17 MUTATED 18 4 6
DNAH17 WILD-TYPE 164 129 66

Figure S2747.  Get High-res Image Gene #924: 'DNAH17 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'DNAH17 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00053 (Fisher's exact test), Q value = 0.016

Table S9967.  Gene #924: 'DNAH17 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
DNAH17 MUTATED 7 11 11 3
DNAH17 WILD-TYPE 105 85 81 183

Figure S2748.  Get High-res Image Gene #924: 'DNAH17 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'DNAH17 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 2e-05 (Fisher's exact test), Q value = 0.0017

Table S9968.  Gene #924: 'DNAH17 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
DNAH17 MUTATED 4 7 11 1 6 2 1
DNAH17 WILD-TYPE 56 43 38 39 57 123 98

Figure S2749.  Get High-res Image Gene #924: 'DNAH17 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'DNAH17 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00298 (Fisher's exact test), Q value = 0.049

Table S9969.  Gene #924: 'DNAH17 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
DNAH17 MUTATED 14 10 2 6
DNAH17 WILD-TYPE 116 68 66 190

Figure S2750.  Get High-res Image Gene #924: 'DNAH17 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'DNAH17 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.133 (Fisher's exact test), Q value = 0.41

Table S9970.  Gene #924: 'DNAH17 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
DNAH17 MUTATED 4 9 3 4 6 1 2 0 3
DNAH17 WILD-TYPE 36 53 25 76 63 47 41 28 71
'DNAH17 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00555 (Fisher's exact test), Q value = 0.067

Table S9971.  Gene #924: 'DNAH17 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
DNAH17 MUTATED 1 2 1 6
DNAH17 WILD-TYPE 32 29 26 13

Figure S2751.  Get High-res Image Gene #924: 'DNAH17 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'DNAH17 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.923 (Fisher's exact test), Q value = 1

Table S9972.  Gene #924: 'DNAH17 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
DNAH17 MUTATED 6 1 2 1
DNAH17 WILD-TYPE 48 9 22 21
'ANKRD17 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00311 (Fisher's exact test), Q value = 0.05

Table S9973.  Gene #925: 'ANKRD17 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ANKRD17 MUTATED 3 1 0 6
ANKRD17 WILD-TYPE 43 57 64 37

Figure S2752.  Get High-res Image Gene #925: 'ANKRD17 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'ANKRD17 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0395 (Fisher's exact test), Q value = 0.21

Table S9974.  Gene #925: 'ANKRD17 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ANKRD17 MUTATED 6 2 2
ANKRD17 WILD-TYPE 45 81 75

Figure S2753.  Get High-res Image Gene #925: 'ANKRD17 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'ANKRD17 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00015 (Fisher's exact test), Q value = 0.0069

Table S9975.  Gene #925: 'ANKRD17 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ANKRD17 MUTATED 23 5 2 0
ANKRD17 WILD-TYPE 155 178 99 20

Figure S2754.  Get High-res Image Gene #925: 'ANKRD17 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ANKRD17 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.125 (Fisher's exact test), Q value = 0.39

Table S9976.  Gene #925: 'ANKRD17 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ANKRD17 MUTATED 7 2 10
ANKRD17 WILD-TYPE 80 78 90
'ANKRD17 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.386 (Fisher's exact test), Q value = 0.71

Table S9977.  Gene #925: 'ANKRD17 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ANKRD17 MUTATED 4 11 13
ANKRD17 WILD-TYPE 85 149 125
'ANKRD17 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.198 (Fisher's exact test), Q value = 0.5

Table S9978.  Gene #925: 'ANKRD17 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ANKRD17 MUTATED 17 9 2
ANKRD17 WILD-TYPE 165 124 70
'ANKRD17 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0714 (Fisher's exact test), Q value = 0.29

Table S9979.  Gene #925: 'ANKRD17 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ANKRD17 MUTATED 3 10 8 9
ANKRD17 WILD-TYPE 109 86 84 177
'ANKRD17 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S9980.  Gene #925: 'ANKRD17 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ANKRD17 MUTATED 3 3 11 0 2 1 10
ANKRD17 WILD-TYPE 57 47 38 40 61 124 89

Figure S2755.  Get High-res Image Gene #925: 'ANKRD17 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ANKRD17 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0818 (Fisher's exact test), Q value = 0.31

Table S9981.  Gene #925: 'ANKRD17 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ANKRD17 MUTATED 10 5 0 13
ANKRD17 WILD-TYPE 120 73 68 183
'ANKRD17 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00017 (Fisher's exact test), Q value = 0.0075

Table S9982.  Gene #925: 'ANKRD17 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ANKRD17 MUTATED 1 7 1 2 13 0 0 1 3
ANKRD17 WILD-TYPE 39 55 27 78 56 48 43 27 71

Figure S2756.  Get High-res Image Gene #925: 'ANKRD17 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'ANKRD17 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00291 (Fisher's exact test), Q value = 0.048

Table S9983.  Gene #925: 'ANKRD17 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
ANKRD17 MUTATED 1 1 0 5
ANKRD17 WILD-TYPE 32 30 27 14

Figure S2757.  Get High-res Image Gene #925: 'ANKRD17 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'ANKRD17 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.38 (Fisher's exact test), Q value = 0.71

Table S9984.  Gene #925: 'ANKRD17 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
ANKRD17 MUTATED 4 0 3 0
ANKRD17 WILD-TYPE 50 10 21 22
'RAB42 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.122 (Fisher's exact test), Q value = 0.39

Table S9985.  Gene #926: 'RAB42 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
RAB42 MUTATED 4 0 0 0
RAB42 WILD-TYPE 174 183 101 20
'RAB42 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.513 (Fisher's exact test), Q value = 0.83

Table S9986.  Gene #926: 'RAB42 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
RAB42 MUTATED 2 0 1
RAB42 WILD-TYPE 85 80 99
'RAB42 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.338 (Fisher's exact test), Q value = 0.67

Table S9987.  Gene #926: 'RAB42 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
RAB42 MUTATED 1 0 2
RAB42 WILD-TYPE 88 160 136
'RAB42 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S9988.  Gene #926: 'RAB42 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
RAB42 MUTATED 2 1 0
RAB42 WILD-TYPE 180 132 72
'RAB42 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.3 (Fisher's exact test), Q value = 0.63

Table S9989.  Gene #926: 'RAB42 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
RAB42 MUTATED 0 2 1 1
RAB42 WILD-TYPE 112 94 91 185
'RAB42 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0999 (Fisher's exact test), Q value = 0.35

Table S9990.  Gene #926: 'RAB42 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
RAB42 MUTATED 0 1 2 0 0 0 1
RAB42 WILD-TYPE 60 49 47 40 63 125 98
'RAB42 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.599 (Fisher's exact test), Q value = 0.9

Table S9991.  Gene #926: 'RAB42 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
RAB42 MUTATED 2 1 0 1
RAB42 WILD-TYPE 128 77 68 195
'RAB42 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.283 (Fisher's exact test), Q value = 0.61

Table S9992.  Gene #926: 'RAB42 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
RAB42 MUTATED 0 1 1 0 2 0 0 0 0
RAB42 WILD-TYPE 40 61 27 80 67 48 43 28 74
'PSMA2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0223 (Fisher's exact test), Q value = 0.15

Table S9993.  Gene #927: 'PSMA2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
PSMA2 MUTATED 6 0 0 0
PSMA2 WILD-TYPE 172 183 101 20

Figure S2758.  Get High-res Image Gene #927: 'PSMA2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'PSMA2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0123 (Fisher's exact test), Q value = 0.11

Table S9994.  Gene #927: 'PSMA2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
PSMA2 MUTATED 0 0 5
PSMA2 WILD-TYPE 87 80 95

Figure S2759.  Get High-res Image Gene #927: 'PSMA2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'PSMA2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.122 (Fisher's exact test), Q value = 0.39

Table S9995.  Gene #927: 'PSMA2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
PSMA2 MUTATED 2 0 2
PSMA2 WILD-TYPE 87 160 136
'PSMA2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S9996.  Gene #927: 'PSMA2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
PSMA2 MUTATED 2 1 1
PSMA2 WILD-TYPE 180 132 71
'PSMA2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.103 (Fisher's exact test), Q value = 0.36

Table S9997.  Gene #927: 'PSMA2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
PSMA2 MUTATED 0 3 2 1
PSMA2 WILD-TYPE 112 93 90 185
'PSMA2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00523 (Fisher's exact test), Q value = 0.065

Table S9998.  Gene #927: 'PSMA2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
PSMA2 MUTATED 0 0 3 2 0 0 1
PSMA2 WILD-TYPE 60 50 46 38 63 125 98

Figure S2760.  Get High-res Image Gene #927: 'PSMA2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'PSMA2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.407 (Fisher's exact test), Q value = 0.73

Table S9999.  Gene #927: 'PSMA2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
PSMA2 MUTATED 3 1 0 1
PSMA2 WILD-TYPE 127 77 68 195
'PSMA2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.179 (Fisher's exact test), Q value = 0.48

Table S10000.  Gene #927: 'PSMA2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
PSMA2 MUTATED 2 1 0 0 2 0 0 0 0
PSMA2 WILD-TYPE 38 61 28 80 67 48 43 28 74
'ZKSCAN1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0234 (Fisher's exact test), Q value = 0.16

Table S10001.  Gene #928: 'ZKSCAN1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ZKSCAN1 MUTATED 2 0 0 3
ZKSCAN1 WILD-TYPE 44 58 64 40

Figure S2761.  Get High-res Image Gene #928: 'ZKSCAN1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'ZKSCAN1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0064 (Fisher's exact test), Q value = 0.074

Table S10002.  Gene #928: 'ZKSCAN1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ZKSCAN1 MUTATED 4 0 1
ZKSCAN1 WILD-TYPE 47 83 76

Figure S2762.  Get High-res Image Gene #928: 'ZKSCAN1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'ZKSCAN1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00501 (Fisher's exact test), Q value = 0.064

Table S10003.  Gene #928: 'ZKSCAN1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ZKSCAN1 MUTATED 8 0 0 0
ZKSCAN1 WILD-TYPE 170 183 101 20

Figure S2763.  Get High-res Image Gene #928: 'ZKSCAN1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ZKSCAN1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.11 (Fisher's exact test), Q value = 0.37

Table S10004.  Gene #928: 'ZKSCAN1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ZKSCAN1 MUTATED 0 0 3
ZKSCAN1 WILD-TYPE 87 80 97
'ZKSCAN1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0511 (Fisher's exact test), Q value = 0.24

Table S10005.  Gene #928: 'ZKSCAN1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ZKSCAN1 MUTATED 4 1 1
ZKSCAN1 WILD-TYPE 85 159 137
'ZKSCAN1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0665 (Fisher's exact test), Q value = 0.28

Table S10006.  Gene #928: 'ZKSCAN1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ZKSCAN1 MUTATED 3 0 3
ZKSCAN1 WILD-TYPE 179 133 69
'ZKSCAN1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.347 (Fisher's exact test), Q value = 0.68

Table S10007.  Gene #928: 'ZKSCAN1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ZKSCAN1 MUTATED 0 2 1 5
ZKSCAN1 WILD-TYPE 112 94 91 181
'ZKSCAN1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.213 (Fisher's exact test), Q value = 0.52

Table S10008.  Gene #928: 'ZKSCAN1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ZKSCAN1 MUTATED 0 1 2 0 0 1 4
ZKSCAN1 WILD-TYPE 60 49 47 40 63 124 95
'ZKSCAN1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.283 (Fisher's exact test), Q value = 0.61

Table S10009.  Gene #928: 'ZKSCAN1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ZKSCAN1 MUTATED 2 0 0 6
ZKSCAN1 WILD-TYPE 128 78 68 190
'ZKSCAN1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0291 (Fisher's exact test), Q value = 0.17

Table S10010.  Gene #928: 'ZKSCAN1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ZKSCAN1 MUTATED 0 1 2 0 4 1 0 0 0
ZKSCAN1 WILD-TYPE 40 61 26 80 65 47 43 28 74

Figure S2764.  Get High-res Image Gene #928: 'ZKSCAN1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'SLC27A2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.119 (Fisher's exact test), Q value = 0.39

Table S10011.  Gene #929: 'SLC27A2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
SLC27A2 MUTATED 2 0 0 1
SLC27A2 WILD-TYPE 44 58 64 42
'SLC27A2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S10012.  Gene #929: 'SLC27A2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
SLC27A2 MUTATED 1 1 1
SLC27A2 WILD-TYPE 50 82 76
'SLC27A2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.327 (Fisher's exact test), Q value = 0.66

Table S10013.  Gene #929: 'SLC27A2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
SLC27A2 MUTATED 5 1 1 0
SLC27A2 WILD-TYPE 173 182 100 20
'SLC27A2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.154 (Fisher's exact test), Q value = 0.44

Table S10014.  Gene #929: 'SLC27A2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
SLC27A2 MUTATED 3 1 0
SLC27A2 WILD-TYPE 84 79 100
'SLC27A2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.547 (Fisher's exact test), Q value = 0.87

Table S10015.  Gene #929: 'SLC27A2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
SLC27A2 MUTATED 1 1 3
SLC27A2 WILD-TYPE 88 159 135
'SLC27A2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.719 (Fisher's exact test), Q value = 0.99

Table S10016.  Gene #929: 'SLC27A2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
SLC27A2 MUTATED 3 2 0
SLC27A2 WILD-TYPE 179 131 72
'SLC27A2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.911 (Fisher's exact test), Q value = 1

Table S10017.  Gene #929: 'SLC27A2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
SLC27A2 MUTATED 1 1 1 4
SLC27A2 WILD-TYPE 111 95 91 182
'SLC27A2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.806 (Fisher's exact test), Q value = 1

Table S10018.  Gene #929: 'SLC27A2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
SLC27A2 MUTATED 1 0 1 0 1 1 3
SLC27A2 WILD-TYPE 59 50 48 40 62 124 96
'SLC27A2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.902 (Fisher's exact test), Q value = 1

Table S10019.  Gene #929: 'SLC27A2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
SLC27A2 MUTATED 2 1 0 4
SLC27A2 WILD-TYPE 128 77 68 192
'SLC27A2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.904 (Fisher's exact test), Q value = 1

Table S10020.  Gene #929: 'SLC27A2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
SLC27A2 MUTATED 0 2 1 1 1 1 0 0 1
SLC27A2 WILD-TYPE 40 60 27 79 68 47 43 28 73
'OR6C75 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.165 (Fisher's exact test), Q value = 0.46

Table S10021.  Gene #930: 'OR6C75 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
OR6C75 MUTATED 6 2 0 0
OR6C75 WILD-TYPE 172 181 101 20
'OR6C75 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.518 (Fisher's exact test), Q value = 0.84

Table S10022.  Gene #930: 'OR6C75 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
OR6C75 MUTATED 3 2 1
OR6C75 WILD-TYPE 84 78 99
'OR6C75 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.306 (Fisher's exact test), Q value = 0.64

Table S10023.  Gene #930: 'OR6C75 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
OR6C75 MUTATED 0 3 4
OR6C75 WILD-TYPE 89 157 134
'OR6C75 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.218 (Fisher's exact test), Q value = 0.53

Table S10024.  Gene #930: 'OR6C75 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
OR6C75 MUTATED 3 1 3
OR6C75 WILD-TYPE 179 132 69
'OR6C75 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.558 (Fisher's exact test), Q value = 0.87

Table S10025.  Gene #930: 'OR6C75 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
OR6C75 MUTATED 1 3 2 2
OR6C75 WILD-TYPE 111 93 90 184
'OR6C75 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.196 (Fisher's exact test), Q value = 0.5

Table S10026.  Gene #930: 'OR6C75 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
OR6C75 MUTATED 1 2 2 0 1 0 2
OR6C75 WILD-TYPE 59 48 47 40 62 125 97
'OR6C75 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.636 (Fisher's exact test), Q value = 0.93

Table S10027.  Gene #930: 'OR6C75 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
OR6C75 MUTATED 3 2 0 3
OR6C75 WILD-TYPE 127 76 68 193
'OR6C75 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.607 (Fisher's exact test), Q value = 0.91

Table S10028.  Gene #930: 'OR6C75 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
OR6C75 MUTATED 1 2 0 0 2 0 1 1 1
OR6C75 WILD-TYPE 39 60 28 80 67 48 42 27 73
'TRIM54 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.422 (Fisher's exact test), Q value = 0.75

Table S10029.  Gene #931: 'TRIM54 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
TRIM54 MUTATED 4 5 0 0
TRIM54 WILD-TYPE 174 178 101 20
'TRIM54 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S10030.  Gene #931: 'TRIM54 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
TRIM54 MUTATED 2 2 3
TRIM54 WILD-TYPE 85 78 97
'TRIM54 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.115 (Fisher's exact test), Q value = 0.38

Table S10031.  Gene #931: 'TRIM54 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
TRIM54 MUTATED 0 6 2
TRIM54 WILD-TYPE 89 154 136
'TRIM54 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.417 (Fisher's exact test), Q value = 0.75

Table S10032.  Gene #931: 'TRIM54 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
TRIM54 MUTATED 2 4 2
TRIM54 WILD-TYPE 180 129 70
'TRIM54 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0829 (Fisher's exact test), Q value = 0.31

Table S10033.  Gene #931: 'TRIM54 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
TRIM54 MUTATED 5 2 0 2
TRIM54 WILD-TYPE 107 94 92 184
'TRIM54 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.485 (Fisher's exact test), Q value = 0.81

Table S10034.  Gene #931: 'TRIM54 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
TRIM54 MUTATED 3 1 1 1 1 1 1
TRIM54 WILD-TYPE 57 49 48 39 62 124 98
'TRIM54 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.15 (Fisher's exact test), Q value = 0.43

Table S10035.  Gene #931: 'TRIM54 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
TRIM54 MUTATED 3 3 1 1
TRIM54 WILD-TYPE 127 75 67 195
'TRIM54 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.294 (Fisher's exact test), Q value = 0.62

Table S10036.  Gene #931: 'TRIM54 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
TRIM54 MUTATED 1 0 0 2 1 3 1 0 0
TRIM54 WILD-TYPE 39 62 28 78 68 45 42 28 74
'TRIM54 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0839 (Fisher's exact test), Q value = 0.31

Table S10037.  Gene #931: 'TRIM54 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
TRIM54 MUTATED 0 1 0 2
TRIM54 WILD-TYPE 33 30 27 17
'TRIM54 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.112 (Fisher's exact test), Q value = 0.37

Table S10038.  Gene #931: 'TRIM54 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
TRIM54 MUTATED 0 0 1 2
TRIM54 WILD-TYPE 54 10 23 20
'ERCC6L MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00172 (Fisher's exact test), Q value = 0.034

Table S10039.  Gene #932: 'ERCC6L MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ERCC6L MUTATED 5 0 0 2
ERCC6L WILD-TYPE 41 58 64 41

Figure S2765.  Get High-res Image Gene #932: 'ERCC6L MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'ERCC6L MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.546 (Fisher's exact test), Q value = 0.86

Table S10040.  Gene #932: 'ERCC6L MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ERCC6L MUTATED 3 2 2
ERCC6L WILD-TYPE 48 81 75
'ERCC6L MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00073 (Fisher's exact test), Q value = 0.02

Table S10041.  Gene #932: 'ERCC6L MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ERCC6L MUTATED 14 1 1 0
ERCC6L WILD-TYPE 164 182 100 20

Figure S2766.  Get High-res Image Gene #932: 'ERCC6L MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ERCC6L MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.437 (Fisher's exact test), Q value = 0.76

Table S10042.  Gene #932: 'ERCC6L MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ERCC6L MUTATED 3 1 5
ERCC6L WILD-TYPE 84 79 95
'ERCC6L MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.425 (Fisher's exact test), Q value = 0.75

Table S10043.  Gene #932: 'ERCC6L MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ERCC6L MUTATED 2 3 6
ERCC6L WILD-TYPE 87 157 132
'ERCC6L MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.922 (Fisher's exact test), Q value = 1

Table S10044.  Gene #932: 'ERCC6L MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ERCC6L MUTATED 6 3 2
ERCC6L WILD-TYPE 176 130 70
'ERCC6L MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.371 (Fisher's exact test), Q value = 0.7

Table S10045.  Gene #932: 'ERCC6L MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ERCC6L MUTATED 1 4 4 7
ERCC6L WILD-TYPE 111 92 88 179
'ERCC6L MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0399 (Fisher's exact test), Q value = 0.21

Table S10046.  Gene #932: 'ERCC6L MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ERCC6L MUTATED 1 2 6 0 1 2 4
ERCC6L WILD-TYPE 59 48 43 40 62 123 95

Figure S2767.  Get High-res Image Gene #932: 'ERCC6L MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ERCC6L MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.295 (Fisher's exact test), Q value = 0.62

Table S10047.  Gene #932: 'ERCC6L MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ERCC6L MUTATED 4 4 0 8
ERCC6L WILD-TYPE 126 74 68 188
'ERCC6L MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.115 (Fisher's exact test), Q value = 0.38

Table S10048.  Gene #932: 'ERCC6L MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ERCC6L MUTATED 2 3 2 1 6 0 1 0 1
ERCC6L WILD-TYPE 38 59 26 79 63 48 42 28 73
'ERCC6L MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.136 (Fisher's exact test), Q value = 0.41

Table S10049.  Gene #932: 'ERCC6L MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
ERCC6L MUTATED 1 0 0 2
ERCC6L WILD-TYPE 32 31 27 17
'ERCC6L MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S10050.  Gene #932: 'ERCC6L MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
ERCC6L MUTATED 2 0 1 0
ERCC6L WILD-TYPE 52 10 23 22
'CXORF38 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.15 (Fisher's exact test), Q value = 0.43

Table S10051.  Gene #933: 'CXORF38 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
CXORF38 MUTATED 4 0 2 0
CXORF38 WILD-TYPE 174 183 99 20
'CXORF38 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.139 (Fisher's exact test), Q value = 0.41

Table S10052.  Gene #933: 'CXORF38 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
CXORF38 MUTATED 4 0 2
CXORF38 WILD-TYPE 83 80 98
'CXORF38 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.873 (Fisher's exact test), Q value = 1

Table S10053.  Gene #933: 'CXORF38 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
CXORF38 MUTATED 1 2 3
CXORF38 WILD-TYPE 88 158 135
'CXORF38 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.761 (Fisher's exact test), Q value = 1

Table S10054.  Gene #933: 'CXORF38 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
CXORF38 MUTATED 4 1 1
CXORF38 WILD-TYPE 178 132 71
'CXORF38 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00529 (Fisher's exact test), Q value = 0.066

Table S10055.  Gene #933: 'CXORF38 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
CXORF38 MUTATED 0 4 2 0
CXORF38 WILD-TYPE 112 92 90 186

Figure S2768.  Get High-res Image Gene #933: 'CXORF38 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'CXORF38 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00823 (Fisher's exact test), Q value = 0.084

Table S10056.  Gene #933: 'CXORF38 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
CXORF38 MUTATED 0 1 3 0 2 0 0
CXORF38 WILD-TYPE 60 49 46 40 61 125 99

Figure S2769.  Get High-res Image Gene #933: 'CXORF38 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CXORF38 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.742 (Fisher's exact test), Q value = 1

Table S10057.  Gene #933: 'CXORF38 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
CXORF38 MUTATED 3 1 0 2
CXORF38 WILD-TYPE 127 77 68 194
'CXORF38 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.534 (Fisher's exact test), Q value = 0.85

Table S10058.  Gene #933: 'CXORF38 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
CXORF38 MUTATED 2 0 0 1 2 0 0 0 1
CXORF38 WILD-TYPE 38 62 28 79 67 48 43 28 73
'C12ORF49 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.735 (Fisher's exact test), Q value = 1

Table S10059.  Gene #934: 'C12ORF49 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
C12ORF49 MUTATED 2 2 0 0
C12ORF49 WILD-TYPE 176 181 101 20
'C12ORF49 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.322 (Fisher's exact test), Q value = 0.65

Table S10060.  Gene #934: 'C12ORF49 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
C12ORF49 MUTATED 0 1 3
C12ORF49 WILD-TYPE 87 79 97
'C12ORF49 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.795 (Fisher's exact test), Q value = 1

Table S10061.  Gene #934: 'C12ORF49 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
C12ORF49 MUTATED 0 2 1
C12ORF49 WILD-TYPE 89 158 137
'C12ORF49 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0813 (Fisher's exact test), Q value = 0.31

Table S10062.  Gene #934: 'C12ORF49 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
C12ORF49 MUTATED 0 3 0
C12ORF49 WILD-TYPE 182 130 72
'C12ORF49 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0297 (Fisher's exact test), Q value = 0.18

Table S10063.  Gene #934: 'C12ORF49 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
C12ORF49 MUTATED 1 3 0 0
C12ORF49 WILD-TYPE 111 93 92 186

Figure S2770.  Get High-res Image Gene #934: 'C12ORF49 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'C12ORF49 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00296 (Fisher's exact test), Q value = 0.049

Table S10064.  Gene #934: 'C12ORF49 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
C12ORF49 MUTATED 0 1 3 0 0 0 0
C12ORF49 WILD-TYPE 60 49 46 40 63 125 99

Figure S2771.  Get High-res Image Gene #934: 'C12ORF49 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'C12ORF49 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0679 (Fisher's exact test), Q value = 0.28

Table S10065.  Gene #934: 'C12ORF49 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
C12ORF49 MUTATED 3 0 1 0
C12ORF49 WILD-TYPE 127 78 67 196
'C12ORF49 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.103 (Fisher's exact test), Q value = 0.36

Table S10066.  Gene #934: 'C12ORF49 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
C12ORF49 MUTATED 0 0 0 0 3 0 1 0 0
C12ORF49 WILD-TYPE 40 62 28 80 66 48 42 28 74
'VEZF1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0616 (Fisher's exact test), Q value = 0.27

Table S10067.  Gene #935: 'VEZF1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
VEZF1 MUTATED 6 0 1 0
VEZF1 WILD-TYPE 172 183 100 20
'VEZF1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.182 (Fisher's exact test), Q value = 0.48

Table S10068.  Gene #935: 'VEZF1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
VEZF1 MUTATED 4 0 3
VEZF1 WILD-TYPE 83 80 97
'VEZF1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00499 (Fisher's exact test), Q value = 0.064

Table S10069.  Gene #935: 'VEZF1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
VEZF1 MUTATED 0 0 6
VEZF1 WILD-TYPE 89 160 132

Figure S2772.  Get High-res Image Gene #935: 'VEZF1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'VEZF1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.336 (Fisher's exact test), Q value = 0.66

Table S10070.  Gene #935: 'VEZF1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
VEZF1 MUTATED 5 1 0
VEZF1 WILD-TYPE 177 132 72
'VEZF1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0212 (Fisher's exact test), Q value = 0.15

Table S10071.  Gene #935: 'VEZF1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
VEZF1 MUTATED 1 3 3 0
VEZF1 WILD-TYPE 111 93 89 186

Figure S2773.  Get High-res Image Gene #935: 'VEZF1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'VEZF1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 3e-05 (Fisher's exact test), Q value = 0.0022

Table S10072.  Gene #935: 'VEZF1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
VEZF1 MUTATED 0 0 6 0 1 0 0
VEZF1 WILD-TYPE 60 50 43 40 62 125 99

Figure S2774.  Get High-res Image Gene #935: 'VEZF1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'VEZF1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.181 (Fisher's exact test), Q value = 0.48

Table S10073.  Gene #935: 'VEZF1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
VEZF1 MUTATED 2 3 1 1
VEZF1 WILD-TYPE 128 75 67 195
'VEZF1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0594 (Fisher's exact test), Q value = 0.27

Table S10074.  Gene #935: 'VEZF1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
VEZF1 MUTATED 0 4 0 0 2 0 1 0 0
VEZF1 WILD-TYPE 40 58 28 80 67 48 42 28 74
'DNAH6 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0636 (Fisher's exact test), Q value = 0.27

Table S10075.  Gene #936: 'DNAH6 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
DNAH6 MUTATED 1 0 0 2
DNAH6 WILD-TYPE 45 58 64 41
'DNAH6 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.347 (Fisher's exact test), Q value = 0.67

Table S10076.  Gene #936: 'DNAH6 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
DNAH6 MUTATED 1 0 2
DNAH6 WILD-TYPE 50 83 75
'DNAH6 MUTATION STATUS' versus 'CN_CNMF'

P value = 2e-05 (Fisher's exact test), Q value = 0.0017

Table S10077.  Gene #936: 'DNAH6 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
DNAH6 MUTATED 21 2 1 0
DNAH6 WILD-TYPE 157 181 100 20

Figure S2775.  Get High-res Image Gene #936: 'DNAH6 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'DNAH6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00073 (Fisher's exact test), Q value = 0.02

Table S10078.  Gene #936: 'DNAH6 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
DNAH6 MUTATED 12 0 9
DNAH6 WILD-TYPE 75 80 91

Figure S2776.  Get High-res Image Gene #936: 'DNAH6 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'DNAH6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0308 (Fisher's exact test), Q value = 0.18

Table S10079.  Gene #936: 'DNAH6 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
DNAH6 MUTATED 4 4 13
DNAH6 WILD-TYPE 85 156 125

Figure S2777.  Get High-res Image Gene #936: 'DNAH6 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'DNAH6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.56 (Fisher's exact test), Q value = 0.87

Table S10080.  Gene #936: 'DNAH6 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
DNAH6 MUTATED 12 7 2
DNAH6 WILD-TYPE 170 126 70
'DNAH6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0103 (Fisher's exact test), Q value = 0.097

Table S10081.  Gene #936: 'DNAH6 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
DNAH6 MUTATED 3 9 8 4
DNAH6 WILD-TYPE 109 87 84 182

Figure S2778.  Get High-res Image Gene #936: 'DNAH6 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'DNAH6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S10082.  Gene #936: 'DNAH6 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
DNAH6 MUTATED 1 3 12 1 4 0 3
DNAH6 WILD-TYPE 59 47 37 39 59 125 96

Figure S2779.  Get High-res Image Gene #936: 'DNAH6 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'DNAH6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.069 (Fisher's exact test), Q value = 0.28

Table S10083.  Gene #936: 'DNAH6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
DNAH6 MUTATED 8 8 1 7
DNAH6 WILD-TYPE 122 70 67 189
'DNAH6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0018 (Fisher's exact test), Q value = 0.035

Table S10084.  Gene #936: 'DNAH6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
DNAH6 MUTATED 2 8 2 0 8 0 1 1 2
DNAH6 WILD-TYPE 38 54 26 80 61 48 42 27 72

Figure S2780.  Get High-res Image Gene #936: 'DNAH6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'DNAH6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0304 (Fisher's exact test), Q value = 0.18

Table S10085.  Gene #936: 'DNAH6 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
DNAH6 MUTATED 3 0 1 4
DNAH6 WILD-TYPE 30 31 26 15

Figure S2781.  Get High-res Image Gene #936: 'DNAH6 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'DNAH6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.952 (Fisher's exact test), Q value = 1

Table S10086.  Gene #936: 'DNAH6 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
DNAH6 MUTATED 5 0 2 1
DNAH6 WILD-TYPE 49 10 22 21
'ATP12A MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0201 (Fisher's exact test), Q value = 0.14

Table S10087.  Gene #937: 'ATP12A MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ATP12A MUTATED 4 0 2 5
ATP12A WILD-TYPE 42 58 62 38

Figure S2782.  Get High-res Image Gene #937: 'ATP12A MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'ATP12A MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0703 (Fisher's exact test), Q value = 0.29

Table S10088.  Gene #937: 'ATP12A MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ATP12A MUTATED 6 2 3
ATP12A WILD-TYPE 45 81 74
'ATP12A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00801 (Fisher's exact test), Q value = 0.084

Table S10089.  Gene #937: 'ATP12A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ATP12A MUTATED 19 7 2 2
ATP12A WILD-TYPE 159 176 99 18

Figure S2783.  Get High-res Image Gene #937: 'ATP12A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ATP12A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S10090.  Gene #937: 'ATP12A MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ATP12A MUTATED 6 5 7
ATP12A WILD-TYPE 81 75 93
'ATP12A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.704 (Fisher's exact test), Q value = 0.98

Table S10091.  Gene #937: 'ATP12A MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ATP12A MUTATED 4 9 10
ATP12A WILD-TYPE 85 151 128
'ATP12A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.884 (Fisher's exact test), Q value = 1

Table S10092.  Gene #937: 'ATP12A MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ATP12A MUTATED 10 8 5
ATP12A WILD-TYPE 172 125 67
'ATP12A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.938 (Fisher's exact test), Q value = 1

Table S10093.  Gene #937: 'ATP12A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ATP12A MUTATED 6 7 5 12
ATP12A WILD-TYPE 106 89 87 174
'ATP12A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00025 (Fisher's exact test), Q value = 0.0096

Table S10094.  Gene #937: 'ATP12A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ATP12A MUTATED 6 3 8 0 2 1 10
ATP12A WILD-TYPE 54 47 41 40 61 124 89

Figure S2784.  Get High-res Image Gene #937: 'ATP12A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ATP12A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.673 (Fisher's exact test), Q value = 0.95

Table S10095.  Gene #937: 'ATP12A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ATP12A MUTATED 11 4 3 11
ATP12A WILD-TYPE 119 74 65 185
'ATP12A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00558 (Fisher's exact test), Q value = 0.068

Table S10096.  Gene #937: 'ATP12A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ATP12A MUTATED 1 4 2 1 11 3 5 1 1
ATP12A WILD-TYPE 39 58 26 79 58 45 38 27 73

Figure S2785.  Get High-res Image Gene #937: 'ATP12A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'ATP12A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.23 (Fisher's exact test), Q value = 0.55

Table S10097.  Gene #937: 'ATP12A MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
ATP12A MUTATED 3 0 1 2
ATP12A WILD-TYPE 30 31 26 17
'ATP12A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.684 (Fisher's exact test), Q value = 0.96

Table S10098.  Gene #937: 'ATP12A MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
ATP12A MUTATED 4 0 2 0
ATP12A WILD-TYPE 50 10 22 22
'SGK3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0749 (Fisher's exact test), Q value = 0.29

Table S10099.  Gene #938: 'SGK3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
SGK3 MUTATED 5 2 1 2
SGK3 WILD-TYPE 173 181 100 18
'SGK3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.496 (Fisher's exact test), Q value = 0.82

Table S10100.  Gene #938: 'SGK3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
SGK3 MUTATED 4 1 3
SGK3 WILD-TYPE 83 79 97
'SGK3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.173 (Fisher's exact test), Q value = 0.47

Table S10101.  Gene #938: 'SGK3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
SGK3 MUTATED 0 6 3
SGK3 WILD-TYPE 89 154 135
'SGK3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.108 (Fisher's exact test), Q value = 0.36

Table S10102.  Gene #938: 'SGK3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
SGK3 MUTATED 3 6 0
SGK3 WILD-TYPE 179 127 72
'SGK3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.344 (Fisher's exact test), Q value = 0.67

Table S10103.  Gene #938: 'SGK3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
SGK3 MUTATED 2 2 4 2
SGK3 WILD-TYPE 110 94 88 184
'SGK3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0865 (Fisher's exact test), Q value = 0.32

Table S10104.  Gene #938: 'SGK3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
SGK3 MUTATED 3 1 1 1 3 0 1
SGK3 WILD-TYPE 57 49 48 39 60 125 98
'SGK3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.27 (Fisher's exact test), Q value = 0.59

Table S10105.  Gene #938: 'SGK3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
SGK3 MUTATED 2 4 1 3
SGK3 WILD-TYPE 128 74 67 193
'SGK3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.425 (Fisher's exact test), Q value = 0.75

Table S10106.  Gene #938: 'SGK3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
SGK3 MUTATED 2 3 0 0 2 1 0 0 2
SGK3 WILD-TYPE 38 59 28 80 67 47 43 28 72
'ODAM MUTATION STATUS' versus 'CN_CNMF'

P value = 0.37 (Fisher's exact test), Q value = 0.7

Table S10107.  Gene #939: 'ODAM MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ODAM MUTATED 1 2 3 0
ODAM WILD-TYPE 177 181 98 20
'ODAM MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.63 (Fisher's exact test), Q value = 0.93

Table S10108.  Gene #939: 'ODAM MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ODAM MUTATED 1 1 3
ODAM WILD-TYPE 86 79 97
'ODAM MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S10109.  Gene #939: 'ODAM MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ODAM MUTATED 1 2 1
ODAM WILD-TYPE 88 158 137
'ODAM MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.528 (Fisher's exact test), Q value = 0.85

Table S10110.  Gene #939: 'ODAM MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ODAM MUTATED 1 2 1
ODAM WILD-TYPE 181 131 71
'ODAM MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.586 (Fisher's exact test), Q value = 0.89

Table S10111.  Gene #939: 'ODAM MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ODAM MUTATED 2 2 1 1
ODAM WILD-TYPE 110 94 91 185
'ODAM MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.143 (Fisher's exact test), Q value = 0.42

Table S10112.  Gene #939: 'ODAM MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ODAM MUTATED 2 2 0 0 1 0 1
ODAM WILD-TYPE 58 48 49 40 62 125 98
'ODAM MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0777 (Fisher's exact test), Q value = 0.3

Table S10113.  Gene #939: 'ODAM MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ODAM MUTATED 2 0 3 1
ODAM WILD-TYPE 128 78 65 195
'ODAM MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.103 (Fisher's exact test), Q value = 0.36

Table S10114.  Gene #939: 'ODAM MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ODAM MUTATED 0 0 0 2 1 0 3 0 0
ODAM WILD-TYPE 40 62 28 78 68 48 40 28 74
'CYSLTR2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0412 (Fisher's exact test), Q value = 0.21

Table S10115.  Gene #940: 'CYSLTR2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
CYSLTR2 MUTATED 0 1 0 3
CYSLTR2 WILD-TYPE 46 57 64 40

Figure S2786.  Get High-res Image Gene #940: 'CYSLTR2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'CYSLTR2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.556 (Fisher's exact test), Q value = 0.87

Table S10116.  Gene #940: 'CYSLTR2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
CYSLTR2 MUTATED 2 1 1
CYSLTR2 WILD-TYPE 49 82 76
'CYSLTR2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.438 (Fisher's exact test), Q value = 0.76

Table S10117.  Gene #940: 'CYSLTR2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
CYSLTR2 MUTATED 9 5 2 1
CYSLTR2 WILD-TYPE 169 178 99 19
'CYSLTR2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.881 (Fisher's exact test), Q value = 1

Table S10118.  Gene #940: 'CYSLTR2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
CYSLTR2 MUTATED 5 3 5
CYSLTR2 WILD-TYPE 82 77 95
'CYSLTR2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.341 (Fisher's exact test), Q value = 0.67

Table S10119.  Gene #940: 'CYSLTR2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
CYSLTR2 MUTATED 4 3 6
CYSLTR2 WILD-TYPE 85 157 132
'CYSLTR2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0241 (Fisher's exact test), Q value = 0.16

Table S10120.  Gene #940: 'CYSLTR2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
CYSLTR2 MUTATED 11 1 1
CYSLTR2 WILD-TYPE 171 132 71

Figure S2787.  Get High-res Image Gene #940: 'CYSLTR2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'CYSLTR2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.345 (Fisher's exact test), Q value = 0.67

Table S10121.  Gene #940: 'CYSLTR2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
CYSLTR2 MUTATED 3 5 5 4
CYSLTR2 WILD-TYPE 109 91 87 182
'CYSLTR2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.371 (Fisher's exact test), Q value = 0.7

Table S10122.  Gene #940: 'CYSLTR2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
CYSLTR2 MUTATED 0 3 3 2 3 3 3
CYSLTR2 WILD-TYPE 60 47 46 38 60 122 96
'CYSLTR2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0497 (Fisher's exact test), Q value = 0.24

Table S10123.  Gene #940: 'CYSLTR2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
CYSLTR2 MUTATED 5 7 1 4
CYSLTR2 WILD-TYPE 125 71 67 192

Figure S2788.  Get High-res Image Gene #940: 'CYSLTR2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'CYSLTR2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0572 (Fisher's exact test), Q value = 0.26

Table S10124.  Gene #940: 'CYSLTR2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
CYSLTR2 MUTATED 0 5 2 4 2 0 2 2 0
CYSLTR2 WILD-TYPE 40 57 26 76 67 48 41 26 74
'CYSLTR2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.231 (Fisher's exact test), Q value = 0.55

Table S10125.  Gene #940: 'CYSLTR2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
CYSLTR2 MUTATED 3 0 1 2
CYSLTR2 WILD-TYPE 30 31 26 17
'CYSLTR2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.491 (Fisher's exact test), Q value = 0.82

Table S10126.  Gene #940: 'CYSLTR2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
CYSLTR2 MUTATED 4 0 0 2
CYSLTR2 WILD-TYPE 50 10 24 20
'RAB6C MUTATION STATUS' versus 'CN_CNMF'

P value = 0.22 (Fisher's exact test), Q value = 0.53

Table S10127.  Gene #941: 'RAB6C MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
RAB6C MUTATED 3 0 2 0
RAB6C WILD-TYPE 175 183 99 20
'RAB6C MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S10128.  Gene #941: 'RAB6C MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
RAB6C MUTATED 2 1 2
RAB6C WILD-TYPE 85 79 98
'RAB6C MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.136 (Fisher's exact test), Q value = 0.41

Table S10129.  Gene #941: 'RAB6C MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
RAB6C MUTATED 2 1 2 0
RAB6C WILD-TYPE 110 95 90 186
'RAB6C MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0787 (Fisher's exact test), Q value = 0.3

Table S10130.  Gene #941: 'RAB6C MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
RAB6C MUTATED 1 1 2 0 1 0 0
RAB6C WILD-TYPE 59 49 47 40 62 125 99
'RAB6C MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0955 (Fisher's exact test), Q value = 0.34

Table S10131.  Gene #941: 'RAB6C MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
RAB6C MUTATED 2 2 1 0
RAB6C WILD-TYPE 128 76 67 196
'RAB6C MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.274 (Fisher's exact test), Q value = 0.6

Table S10132.  Gene #941: 'RAB6C MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
RAB6C MUTATED 0 2 1 0 1 0 1 0 0
RAB6C WILD-TYPE 40 60 27 80 68 48 42 28 74
'ZC3H6 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.114 (Fisher's exact test), Q value = 0.37

Table S10133.  Gene #942: 'ZC3H6 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ZC3H6 MUTATED 2 0 1 3
ZC3H6 WILD-TYPE 44 58 63 40
'ZC3H6 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.878 (Fisher's exact test), Q value = 1

Table S10134.  Gene #942: 'ZC3H6 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ZC3H6 MUTATED 2 2 2
ZC3H6 WILD-TYPE 49 81 75
'ZC3H6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00092 (Fisher's exact test), Q value = 0.023

Table S10135.  Gene #942: 'ZC3H6 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ZC3H6 MUTATED 15 3 0 0
ZC3H6 WILD-TYPE 163 180 101 20

Figure S2789.  Get High-res Image Gene #942: 'ZC3H6 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ZC3H6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.617 (Fisher's exact test), Q value = 0.92

Table S10136.  Gene #942: 'ZC3H6 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ZC3H6 MUTATED 5 2 5
ZC3H6 WILD-TYPE 82 78 95
'ZC3H6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.112 (Fisher's exact test), Q value = 0.37

Table S10137.  Gene #942: 'ZC3H6 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ZC3H6 MUTATED 2 3 9
ZC3H6 WILD-TYPE 87 157 129
'ZC3H6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.1 (Fisher's exact test), Q value = 0.35

Table S10138.  Gene #942: 'ZC3H6 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ZC3H6 MUTATED 10 4 0
ZC3H6 WILD-TYPE 172 129 72
'ZC3H6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.137 (Fisher's exact test), Q value = 0.41

Table S10139.  Gene #942: 'ZC3H6 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ZC3H6 MUTATED 1 6 5 6
ZC3H6 WILD-TYPE 111 90 87 180
'ZC3H6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.203 (Fisher's exact test), Q value = 0.51

Table S10140.  Gene #942: 'ZC3H6 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ZC3H6 MUTATED 2 4 3 2 2 1 4
ZC3H6 WILD-TYPE 58 46 46 38 61 124 95
'ZC3H6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.542 (Fisher's exact test), Q value = 0.86

Table S10141.  Gene #942: 'ZC3H6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ZC3H6 MUTATED 7 3 1 6
ZC3H6 WILD-TYPE 123 75 67 190
'ZC3H6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.356 (Fisher's exact test), Q value = 0.68

Table S10142.  Gene #942: 'ZC3H6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ZC3H6 MUTATED 3 2 1 2 3 0 4 0 2
ZC3H6 WILD-TYPE 37 60 27 78 66 48 39 28 72
'ZC3H6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.628 (Fisher's exact test), Q value = 0.92

Table S10143.  Gene #942: 'ZC3H6 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
ZC3H6 MUTATED 2 2 0 1
ZC3H6 WILD-TYPE 31 29 27 18
'ZC3H6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.636 (Fisher's exact test), Q value = 0.93

Table S10144.  Gene #942: 'ZC3H6 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
ZC3H6 MUTATED 4 0 0 1
ZC3H6 WILD-TYPE 50 10 24 21
'TMEM48 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0635 (Fisher's exact test), Q value = 0.27

Table S10145.  Gene #943: 'TMEM48 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
TMEM48 MUTATED 1 0 0 2
TMEM48 WILD-TYPE 45 58 64 41
'TMEM48 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S10146.  Gene #943: 'TMEM48 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
TMEM48 MUTATED 1 1 1
TMEM48 WILD-TYPE 50 82 76
'TMEM48 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00203 (Fisher's exact test), Q value = 0.038

Table S10147.  Gene #943: 'TMEM48 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
TMEM48 MUTATED 10 0 1 0
TMEM48 WILD-TYPE 168 183 100 20

Figure S2790.  Get High-res Image Gene #943: 'TMEM48 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'TMEM48 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.497 (Fisher's exact test), Q value = 0.82

Table S10148.  Gene #943: 'TMEM48 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
TMEM48 MUTATED 4 1 3
TMEM48 WILD-TYPE 83 79 97
'TMEM48 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.603 (Fisher's exact test), Q value = 0.91

Table S10149.  Gene #943: 'TMEM48 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
TMEM48 MUTATED 1 4 5
TMEM48 WILD-TYPE 88 156 133
'TMEM48 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.917 (Fisher's exact test), Q value = 1

Table S10150.  Gene #943: 'TMEM48 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
TMEM48 MUTATED 5 4 1
TMEM48 WILD-TYPE 177 129 71
'TMEM48 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.212 (Fisher's exact test), Q value = 0.52

Table S10151.  Gene #943: 'TMEM48 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
TMEM48 MUTATED 1 5 2 3
TMEM48 WILD-TYPE 111 91 90 183
'TMEM48 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.156 (Fisher's exact test), Q value = 0.44

Table S10152.  Gene #943: 'TMEM48 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
TMEM48 MUTATED 2 1 4 0 1 1 2
TMEM48 WILD-TYPE 58 49 45 40 62 124 97
'TMEM48 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.825 (Fisher's exact test), Q value = 1

Table S10153.  Gene #943: 'TMEM48 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
TMEM48 MUTATED 2 2 1 6
TMEM48 WILD-TYPE 128 76 67 190
'TMEM48 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.363 (Fisher's exact test), Q value = 0.69

Table S10154.  Gene #943: 'TMEM48 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
TMEM48 MUTATED 0 2 0 1 5 0 1 0 2
TMEM48 WILD-TYPE 40 60 28 79 64 48 42 28 72
'C12ORF10 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.534 (Fisher's exact test), Q value = 0.85

Table S10155.  Gene #944: 'C12ORF10 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
C12ORF10 MUTATED 3 1 0 0
C12ORF10 WILD-TYPE 175 182 101 20
'C12ORF10 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0371 (Fisher's exact test), Q value = 0.2

Table S10156.  Gene #944: 'C12ORF10 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
C12ORF10 MUTATED 0 0 4
C12ORF10 WILD-TYPE 87 80 96

Figure S2791.  Get High-res Image Gene #944: 'C12ORF10 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'C12ORF10 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.455 (Fisher's exact test), Q value = 0.78

Table S10157.  Gene #944: 'C12ORF10 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
C12ORF10 MUTATED 1 2 0
C12ORF10 WILD-TYPE 88 158 138
'C12ORF10 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.299 (Fisher's exact test), Q value = 0.63

Table S10158.  Gene #944: 'C12ORF10 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
C12ORF10 MUTATED 3 0 0
C12ORF10 WILD-TYPE 179 133 72
'C12ORF10 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0162 (Fisher's exact test), Q value = 0.13

Table S10159.  Gene #944: 'C12ORF10 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
C12ORF10 MUTATED 0 3 1 0
C12ORF10 WILD-TYPE 112 93 91 186

Figure S2792.  Get High-res Image Gene #944: 'C12ORF10 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'C12ORF10 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0087 (Fisher's exact test), Q value = 0.087

Table S10160.  Gene #944: 'C12ORF10 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
C12ORF10 MUTATED 0 2 2 0 0 0 0
C12ORF10 WILD-TYPE 60 48 47 40 63 125 99

Figure S2793.  Get High-res Image Gene #944: 'C12ORF10 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'C12ORF10 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0282 (Fisher's exact test), Q value = 0.17

Table S10161.  Gene #944: 'C12ORF10 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
C12ORF10 MUTATED 4 0 0 0
C12ORF10 WILD-TYPE 126 78 68 196

Figure S2794.  Get High-res Image Gene #944: 'C12ORF10 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'C12ORF10 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.338 (Fisher's exact test), Q value = 0.67

Table S10162.  Gene #944: 'C12ORF10 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
C12ORF10 MUTATED 1 1 1 0 1 0 0 0 0
C12ORF10 WILD-TYPE 39 61 27 80 68 48 43 28 74
'OSTM1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.638 (Fisher's exact test), Q value = 0.93

Table S10163.  Gene #945: 'OSTM1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
OSTM1 MUTATED 3 2 0 0
OSTM1 WILD-TYPE 175 181 101 20
'OSTM1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.134 (Fisher's exact test), Q value = 0.41

Table S10164.  Gene #945: 'OSTM1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
OSTM1 MUTATED 0 1 4
OSTM1 WILD-TYPE 87 79 96
'OSTM1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.298 (Fisher's exact test), Q value = 0.63

Table S10165.  Gene #945: 'OSTM1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
OSTM1 MUTATED 0 4 1
OSTM1 WILD-TYPE 89 156 137
'OSTM1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.343 (Fisher's exact test), Q value = 0.67

Table S10166.  Gene #945: 'OSTM1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
OSTM1 MUTATED 1 3 1
OSTM1 WILD-TYPE 181 130 71
'OSTM1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0582 (Fisher's exact test), Q value = 0.26

Table S10167.  Gene #945: 'OSTM1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
OSTM1 MUTATED 1 3 1 0
OSTM1 WILD-TYPE 111 93 91 186
'OSTM1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00417 (Fisher's exact test), Q value = 0.059

Table S10168.  Gene #945: 'OSTM1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
OSTM1 MUTATED 0 1 3 1 0 0 0
OSTM1 WILD-TYPE 60 49 46 39 63 125 99

Figure S2795.  Get High-res Image Gene #945: 'OSTM1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'OSTM1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0283 (Fisher's exact test), Q value = 0.17

Table S10169.  Gene #945: 'OSTM1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
OSTM1 MUTATED 4 0 1 0
OSTM1 WILD-TYPE 126 78 67 196

Figure S2796.  Get High-res Image Gene #945: 'OSTM1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'OSTM1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.323 (Fisher's exact test), Q value = 0.65

Table S10170.  Gene #945: 'OSTM1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
OSTM1 MUTATED 0 0 0 1 3 0 1 0 0
OSTM1 WILD-TYPE 40 62 28 79 66 48 42 28 74
'OSTM1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.138 (Fisher's exact test), Q value = 0.41

Table S10171.  Gene #945: 'OSTM1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
OSTM1 MUTATED 1 0 0 2
OSTM1 WILD-TYPE 32 31 27 17
'OSTM1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.14 (Fisher's exact test), Q value = 0.42

Table S10172.  Gene #945: 'OSTM1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
OSTM1 MUTATED 0 0 2 1
OSTM1 WILD-TYPE 54 10 22 21
'PLEKHB2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.904 (Fisher's exact test), Q value = 1

Table S10173.  Gene #946: 'PLEKHB2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
PLEKHB2 MUTATED 3 2 1 0
PLEKHB2 WILD-TYPE 175 181 100 20
'PLEKHB2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.739 (Fisher's exact test), Q value = 1

Table S10174.  Gene #946: 'PLEKHB2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
PLEKHB2 MUTATED 2 2 1
PLEKHB2 WILD-TYPE 85 78 99
'PLEKHB2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.796 (Fisher's exact test), Q value = 1

Table S10175.  Gene #946: 'PLEKHB2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
PLEKHB2 MUTATED 0 2 1
PLEKHB2 WILD-TYPE 89 158 137
'PLEKHB2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.593 (Fisher's exact test), Q value = 0.9

Table S10176.  Gene #946: 'PLEKHB2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
PLEKHB2 MUTATED 1 2 0
PLEKHB2 WILD-TYPE 181 131 72
'PLEKHB2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.559 (Fisher's exact test), Q value = 0.87

Table S10177.  Gene #946: 'PLEKHB2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
PLEKHB2 MUTATED 2 1 2 1
PLEKHB2 WILD-TYPE 110 95 90 185
'PLEKHB2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0772 (Fisher's exact test), Q value = 0.3

Table S10178.  Gene #946: 'PLEKHB2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
PLEKHB2 MUTATED 1 2 2 0 0 0 1
PLEKHB2 WILD-TYPE 59 48 47 40 63 125 98
'PLEKHB2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.243 (Fisher's exact test), Q value = 0.57

Table S10179.  Gene #946: 'PLEKHB2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
PLEKHB2 MUTATED 3 2 0 1
PLEKHB2 WILD-TYPE 127 76 68 195
'PLEKHB2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.484 (Fisher's exact test), Q value = 0.81

Table S10180.  Gene #946: 'PLEKHB2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
PLEKHB2 MUTATED 0 1 1 3 1 0 0 0 0
PLEKHB2 WILD-TYPE 40 61 27 77 68 48 43 28 74
'RALA MUTATION STATUS' versus 'CN_CNMF'

P value = 0.394 (Fisher's exact test), Q value = 0.72

Table S10181.  Gene #947: 'RALA MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
RALA MUTATED 5 3 0 0
RALA WILD-TYPE 173 180 101 20
'RALA MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.141 (Fisher's exact test), Q value = 0.42

Table S10182.  Gene #947: 'RALA MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
RALA MUTATED 5 1 1
RALA WILD-TYPE 82 79 99
'RALA MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.303 (Fisher's exact test), Q value = 0.63

Table S10183.  Gene #947: 'RALA MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
RALA MUTATED 0 3 4
RALA WILD-TYPE 89 157 134
'RALA MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S10184.  Gene #947: 'RALA MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
RALA MUTATED 4 2 1
RALA WILD-TYPE 178 131 71
'RALA MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.925 (Fisher's exact test), Q value = 1

Table S10185.  Gene #947: 'RALA MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
RALA MUTATED 2 1 2 3
RALA WILD-TYPE 110 95 90 183
'RALA MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0714 (Fisher's exact test), Q value = 0.29

Table S10186.  Gene #947: 'RALA MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
RALA MUTATED 1 0 3 2 0 1 1
RALA WILD-TYPE 59 50 46 38 63 124 98
'RALA MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.633 (Fisher's exact test), Q value = 0.93

Table S10187.  Gene #947: 'RALA MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
RALA MUTATED 3 2 0 3
RALA WILD-TYPE 127 76 68 193
'RALA MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.714 (Fisher's exact test), Q value = 0.98

Table S10188.  Gene #947: 'RALA MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
RALA MUTATED 2 2 0 1 2 0 0 0 1
RALA WILD-TYPE 38 60 28 79 67 48 43 28 73
'BRD8 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00086 (Fisher's exact test), Q value = 0.022

Table S10189.  Gene #948: 'BRD8 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
BRD8 MUTATED 1 0 0 5
BRD8 WILD-TYPE 45 58 64 38

Figure S2797.  Get High-res Image Gene #948: 'BRD8 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'BRD8 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0149 (Fisher's exact test), Q value = 0.12

Table S10190.  Gene #948: 'BRD8 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
BRD8 MUTATED 4 0 2
BRD8 WILD-TYPE 47 83 75

Figure S2798.  Get High-res Image Gene #948: 'BRD8 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'BRD8 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00039 (Fisher's exact test), Q value = 0.013

Table S10191.  Gene #948: 'BRD8 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
BRD8 MUTATED 15 1 1 1
BRD8 WILD-TYPE 163 182 100 19

Figure S2799.  Get High-res Image Gene #948: 'BRD8 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'BRD8 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0344 (Fisher's exact test), Q value = 0.19

Table S10192.  Gene #948: 'BRD8 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
BRD8 MUTATED 2 1 9
BRD8 WILD-TYPE 85 79 91

Figure S2800.  Get High-res Image Gene #948: 'BRD8 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'BRD8 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.608 (Fisher's exact test), Q value = 0.91

Table S10193.  Gene #948: 'BRD8 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
BRD8 MUTATED 2 5 7
BRD8 WILD-TYPE 87 155 131
'BRD8 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.822 (Fisher's exact test), Q value = 1

Table S10194.  Gene #948: 'BRD8 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
BRD8 MUTATED 6 6 2
BRD8 WILD-TYPE 176 127 70
'BRD8 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0489 (Fisher's exact test), Q value = 0.24

Table S10195.  Gene #948: 'BRD8 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
BRD8 MUTATED 1 8 3 6
BRD8 WILD-TYPE 111 88 89 180

Figure S2801.  Get High-res Image Gene #948: 'BRD8 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'BRD8 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-04 (Fisher's exact test), Q value = 0.0052

Table S10196.  Gene #948: 'BRD8 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
BRD8 MUTATED 2 2 8 1 0 0 5
BRD8 WILD-TYPE 58 48 41 39 63 125 94

Figure S2802.  Get High-res Image Gene #948: 'BRD8 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'BRD8 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0762 (Fisher's exact test), Q value = 0.3

Table S10197.  Gene #948: 'BRD8 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
BRD8 MUTATED 9 2 0 6
BRD8 WILD-TYPE 121 76 68 190
'BRD8 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00225 (Fisher's exact test), Q value = 0.041

Table S10198.  Gene #948: 'BRD8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
BRD8 MUTATED 3 2 3 0 7 0 0 1 1
BRD8 WILD-TYPE 37 60 25 80 62 48 43 27 73

Figure S2803.  Get High-res Image Gene #948: 'BRD8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'BRD8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0243 (Fisher's exact test), Q value = 0.16

Table S10199.  Gene #948: 'BRD8 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
BRD8 MUTATED 3 0 0 3
BRD8 WILD-TYPE 30 31 27 16

Figure S2804.  Get High-res Image Gene #948: 'BRD8 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'BRD8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.687 (Fisher's exact test), Q value = 0.96

Table S10200.  Gene #948: 'BRD8 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
BRD8 MUTATED 4 0 2 0
BRD8 WILD-TYPE 50 10 22 22
'PER3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0367 (Fisher's exact test), Q value = 0.2

Table S10201.  Gene #949: 'PER3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
PER3 MUTATED 3 0 1 4
PER3 WILD-TYPE 43 58 63 39

Figure S2805.  Get High-res Image Gene #949: 'PER3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'PER3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.252 (Fisher's exact test), Q value = 0.58

Table S10202.  Gene #949: 'PER3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
PER3 MUTATED 3 1 4
PER3 WILD-TYPE 48 82 73
'PER3 MUTATION STATUS' versus 'CN_CNMF'

P value = 3e-04 (Fisher's exact test), Q value = 0.011

Table S10203.  Gene #949: 'PER3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
PER3 MUTATED 15 2 0 1
PER3 WILD-TYPE 163 181 101 19

Figure S2806.  Get High-res Image Gene #949: 'PER3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'PER3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.257 (Fisher's exact test), Q value = 0.58

Table S10204.  Gene #949: 'PER3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
PER3 MUTATED 3 1 6
PER3 WILD-TYPE 84 79 94
'PER3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.632 (Fisher's exact test), Q value = 0.93

Table S10205.  Gene #949: 'PER3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
PER3 MUTATED 1 5 5
PER3 WILD-TYPE 88 155 133
'PER3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.195 (Fisher's exact test), Q value = 0.5

Table S10206.  Gene #949: 'PER3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
PER3 MUTATED 5 6 0
PER3 WILD-TYPE 177 127 72
'PER3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.116 (Fisher's exact test), Q value = 0.38

Table S10207.  Gene #949: 'PER3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
PER3 MUTATED 1 7 3 7
PER3 WILD-TYPE 111 89 89 179
'PER3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0104 (Fisher's exact test), Q value = 0.097

Table S10208.  Gene #949: 'PER3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
PER3 MUTATED 1 3 4 1 0 1 8
PER3 WILD-TYPE 59 47 45 39 63 124 91

Figure S2807.  Get High-res Image Gene #949: 'PER3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'PER3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.257 (Fisher's exact test), Q value = 0.58

Table S10209.  Gene #949: 'PER3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
PER3 MUTATED 7 2 0 7
PER3 WILD-TYPE 123 76 68 189
'PER3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.485 (Fisher's exact test), Q value = 0.81

Table S10210.  Gene #949: 'PER3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
PER3 MUTATED 3 2 1 3 3 0 0 2 2
PER3 WILD-TYPE 37 60 27 77 66 48 43 26 72
'PER3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.137 (Fisher's exact test), Q value = 0.41

Table S10211.  Gene #949: 'PER3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
PER3 MUTATED 1 0 0 2
PER3 WILD-TYPE 32 31 27 17
'PER3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S10212.  Gene #949: 'PER3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
PER3 MUTATED 2 0 1 0
PER3 WILD-TYPE 52 10 23 22
'WT1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.167 (Fisher's exact test), Q value = 0.46

Table S10213.  Gene #950: 'WT1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
WT1 MUTATED 3 1 0 1
WT1 WILD-TYPE 43 57 64 42
'WT1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.255 (Fisher's exact test), Q value = 0.58

Table S10214.  Gene #950: 'WT1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
WT1 MUTATED 3 1 1
WT1 WILD-TYPE 48 82 76
'WT1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.138 (Fisher's exact test), Q value = 0.41

Table S10215.  Gene #950: 'WT1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
WT1 MUTATED 14 6 9 1
WT1 WILD-TYPE 164 177 92 19
'WT1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.726 (Fisher's exact test), Q value = 0.99

Table S10216.  Gene #950: 'WT1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
WT1 MUTATED 8 6 11
WT1 WILD-TYPE 79 74 89
'WT1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.171 (Fisher's exact test), Q value = 0.47

Table S10217.  Gene #950: 'WT1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
WT1 MUTATED 2 13 8
WT1 WILD-TYPE 87 147 130
'WT1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.609 (Fisher's exact test), Q value = 0.91

Table S10218.  Gene #950: 'WT1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
WT1 MUTATED 9 10 4
WT1 WILD-TYPE 173 123 68
'WT1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0187 (Fisher's exact test), Q value = 0.14

Table S10219.  Gene #950: 'WT1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
WT1 MUTATED 6 11 8 5
WT1 WILD-TYPE 106 85 84 181

Figure S2808.  Get High-res Image Gene #950: 'WT1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'WT1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00107 (Fisher's exact test), Q value = 0.026

Table S10220.  Gene #950: 'WT1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
WT1 MUTATED 6 5 6 2 6 0 5
WT1 WILD-TYPE 54 45 43 38 57 125 94

Figure S2809.  Get High-res Image Gene #950: 'WT1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'WT1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00776 (Fisher's exact test), Q value = 0.082

Table S10221.  Gene #950: 'WT1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
WT1 MUTATED 15 7 2 6
WT1 WILD-TYPE 115 71 66 190

Figure S2810.  Get High-res Image Gene #950: 'WT1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'WT1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0328 (Fisher's exact test), Q value = 0.19

Table S10222.  Gene #950: 'WT1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
WT1 MUTATED 4 5 1 5 8 2 5 0 0
WT1 WILD-TYPE 36 57 27 75 61 46 38 28 74

Figure S2811.  Get High-res Image Gene #950: 'WT1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'WT1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.335 (Fisher's exact test), Q value = 0.66

Table S10223.  Gene #950: 'WT1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
WT1 MUTATED 0 3 2 1
WT1 WILD-TYPE 33 28 25 18
'WT1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.683 (Fisher's exact test), Q value = 0.96

Table S10224.  Gene #950: 'WT1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
WT1 MUTATED 4 0 2 0
WT1 WILD-TYPE 50 10 22 22
'METTL9 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.537 (Fisher's exact test), Q value = 0.86

Table S10225.  Gene #951: 'METTL9 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
METTL9 MUTATED 3 1 0 0
METTL9 WILD-TYPE 175 182 101 20
'METTL9 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.207 (Fisher's exact test), Q value = 0.51

Table S10226.  Gene #951: 'METTL9 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
METTL9 MUTATED 3 0 1
METTL9 WILD-TYPE 84 80 99
'METTL9 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.61 (Fisher's exact test), Q value = 0.91

Table S10227.  Gene #951: 'METTL9 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
METTL9 MUTATED 0 1 2
METTL9 WILD-TYPE 89 159 136
'METTL9 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.3 (Fisher's exact test), Q value = 0.63

Table S10228.  Gene #951: 'METTL9 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
METTL9 MUTATED 3 0 0
METTL9 WILD-TYPE 179 133 72
'METTL9 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.139 (Fisher's exact test), Q value = 0.42

Table S10229.  Gene #951: 'METTL9 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
METTL9 MUTATED 1 1 2 0
METTL9 WILD-TYPE 111 95 90 186
'METTL9 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0464 (Fisher's exact test), Q value = 0.23

Table S10230.  Gene #951: 'METTL9 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
METTL9 MUTATED 0 1 2 0 1 0 0
METTL9 WILD-TYPE 60 49 47 40 62 125 99

Figure S2812.  Get High-res Image Gene #951: 'METTL9 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'METTL9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.105 (Fisher's exact test), Q value = 0.36

Table S10231.  Gene #951: 'METTL9 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
METTL9 MUTATED 3 1 0 0
METTL9 WILD-TYPE 127 77 68 196
'METTL9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0629 (Fisher's exact test), Q value = 0.27

Table S10232.  Gene #951: 'METTL9 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
METTL9 MUTATED 0 3 0 0 0 0 1 0 0
METTL9 WILD-TYPE 40 59 28 80 69 48 42 28 74
'FH MUTATION STATUS' versus 'CN_CNMF'

P value = 0.628 (Fisher's exact test), Q value = 0.92

Table S10233.  Gene #952: 'FH MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
FH MUTATED 6 3 1 0
FH WILD-TYPE 172 180 100 20
'FH MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0773 (Fisher's exact test), Q value = 0.3

Table S10234.  Gene #952: 'FH MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
FH MUTATED 3 0 6
FH WILD-TYPE 84 80 94
'FH MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.277 (Fisher's exact test), Q value = 0.6

Table S10235.  Gene #952: 'FH MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
FH MUTATED 0 5 3
FH WILD-TYPE 89 155 135
'FH MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.639 (Fisher's exact test), Q value = 0.93

Table S10236.  Gene #952: 'FH MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
FH MUTATED 3 4 1
FH WILD-TYPE 179 129 71
'FH MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.44 (Fisher's exact test), Q value = 0.77

Table S10237.  Gene #952: 'FH MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
FH MUTATED 1 4 2 3
FH WILD-TYPE 111 92 90 183
'FH MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.27 (Fisher's exact test), Q value = 0.59

Table S10238.  Gene #952: 'FH MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
FH MUTATED 1 1 3 1 0 1 3
FH WILD-TYPE 59 49 46 39 63 124 96
'FH MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S10239.  Gene #952: 'FH MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
FH MUTATED 3 2 1 4
FH WILD-TYPE 127 76 67 192
'FH MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.506 (Fisher's exact test), Q value = 0.83

Table S10240.  Gene #952: 'FH MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
FH MUTATED 1 2 0 2 3 0 2 0 0
FH WILD-TYPE 39 60 28 78 66 48 41 28 74
'FH MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.138 (Fisher's exact test), Q value = 0.41

Table S10241.  Gene #952: 'FH MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
FH MUTATED 1 0 0 2
FH WILD-TYPE 32 31 27 17
'FH MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.841 (Fisher's exact test), Q value = 1

Table S10242.  Gene #952: 'FH MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
FH MUTATED 2 0 0 1
FH WILD-TYPE 52 10 24 21
'H2AFJ MUTATION STATUS' versus 'CN_CNMF'

P value = 0.417 (Fisher's exact test), Q value = 0.74

Table S10243.  Gene #953: 'H2AFJ MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
H2AFJ MUTATED 2 0 1 0
H2AFJ WILD-TYPE 176 183 100 20
'H2AFJ MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.779 (Fisher's exact test), Q value = 1

Table S10244.  Gene #953: 'H2AFJ MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
H2AFJ MUTATED 1 0 2
H2AFJ WILD-TYPE 86 80 98
'H2AFJ MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0705 (Fisher's exact test), Q value = 0.29

Table S10245.  Gene #953: 'H2AFJ MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
H2AFJ MUTATED 0 2 1 0
H2AFJ WILD-TYPE 112 94 91 186
'H2AFJ MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.127 (Fisher's exact test), Q value = 0.4

Table S10246.  Gene #953: 'H2AFJ MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
H2AFJ MUTATED 0 0 1 1 1 0 0
H2AFJ WILD-TYPE 60 50 48 39 62 125 99
'H2AFJ MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0674 (Fisher's exact test), Q value = 0.28

Table S10247.  Gene #953: 'H2AFJ MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
H2AFJ MUTATED 3 0 0 0
H2AFJ WILD-TYPE 127 78 68 196
'H2AFJ MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.804 (Fisher's exact test), Q value = 1

Table S10248.  Gene #953: 'H2AFJ MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
H2AFJ MUTATED 1 0 0 1 1 0 0 0 0
H2AFJ WILD-TYPE 39 62 28 79 68 48 43 28 74
'CDH10 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00015 (Fisher's exact test), Q value = 0.0069

Table S10249.  Gene #954: 'CDH10 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
CDH10 MUTATED 5 0 1 8
CDH10 WILD-TYPE 41 58 63 35

Figure S2813.  Get High-res Image Gene #954: 'CDH10 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'CDH10 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00131 (Fisher's exact test), Q value = 0.029

Table S10250.  Gene #954: 'CDH10 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
CDH10 MUTATED 9 1 4
CDH10 WILD-TYPE 42 82 73

Figure S2814.  Get High-res Image Gene #954: 'CDH10 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'CDH10 MUTATION STATUS' versus 'CN_CNMF'

P value = 2e-05 (Fisher's exact test), Q value = 0.0017

Table S10251.  Gene #954: 'CDH10 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
CDH10 MUTATED 31 4 5 1
CDH10 WILD-TYPE 147 179 96 19

Figure S2815.  Get High-res Image Gene #954: 'CDH10 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'CDH10 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.67 (Fisher's exact test), Q value = 0.95

Table S10252.  Gene #954: 'CDH10 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
CDH10 MUTATED 10 6 11
CDH10 WILD-TYPE 77 74 89
'CDH10 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.379 (Fisher's exact test), Q value = 0.71

Table S10253.  Gene #954: 'CDH10 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
CDH10 MUTATED 6 14 17
CDH10 WILD-TYPE 83 146 121
'CDH10 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.456 (Fisher's exact test), Q value = 0.78

Table S10254.  Gene #954: 'CDH10 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
CDH10 MUTATED 19 14 4
CDH10 WILD-TYPE 163 119 68
'CDH10 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.281 (Fisher's exact test), Q value = 0.61

Table S10255.  Gene #954: 'CDH10 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
CDH10 MUTATED 7 12 10 13
CDH10 WILD-TYPE 105 84 82 173
'CDH10 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 2e-05 (Fisher's exact test), Q value = 0.0017

Table S10256.  Gene #954: 'CDH10 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
CDH10 MUTATED 4 8 11 1 5 1 12
CDH10 WILD-TYPE 56 42 38 39 58 124 87

Figure S2816.  Get High-res Image Gene #954: 'CDH10 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CDH10 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0846 (Fisher's exact test), Q value = 0.31

Table S10257.  Gene #954: 'CDH10 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
CDH10 MUTATED 18 6 3 13
CDH10 WILD-TYPE 112 72 65 183
'CDH10 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00218 (Fisher's exact test), Q value = 0.04

Table S10258.  Gene #954: 'CDH10 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
CDH10 MUTATED 4 9 3 2 14 2 3 1 2
CDH10 WILD-TYPE 36 53 25 78 55 46 40 27 72

Figure S2817.  Get High-res Image Gene #954: 'CDH10 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'CDH10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00488 (Fisher's exact test), Q value = 0.063

Table S10259.  Gene #954: 'CDH10 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
CDH10 MUTATED 6 1 0 5
CDH10 WILD-TYPE 27 30 27 14

Figure S2818.  Get High-res Image Gene #954: 'CDH10 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'CDH10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.15 (Fisher's exact test), Q value = 0.43

Table S10260.  Gene #954: 'CDH10 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
CDH10 MUTATED 10 0 1 1
CDH10 WILD-TYPE 44 10 23 21
'HCRTR2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.12 (Fisher's exact test), Q value = 0.39

Table S10261.  Gene #955: 'HCRTR2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
HCRTR2 MUTATED 2 0 0 1
HCRTR2 WILD-TYPE 44 58 64 42
'HCRTR2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.184 (Fisher's exact test), Q value = 0.48

Table S10262.  Gene #955: 'HCRTR2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
HCRTR2 MUTATED 2 0 1
HCRTR2 WILD-TYPE 49 83 76
'HCRTR2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.791 (Fisher's exact test), Q value = 1

Table S10263.  Gene #955: 'HCRTR2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
HCRTR2 MUTATED 3 1 1 0
HCRTR2 WILD-TYPE 175 182 100 20
'HCRTR2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0379 (Fisher's exact test), Q value = 0.2

Table S10264.  Gene #955: 'HCRTR2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
HCRTR2 MUTATED 0 0 4
HCRTR2 WILD-TYPE 87 80 96

Figure S2819.  Get High-res Image Gene #955: 'HCRTR2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'HCRTR2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.16 (Fisher's exact test), Q value = 0.45

Table S10265.  Gene #955: 'HCRTR2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
HCRTR2 MUTATED 0 5 1
HCRTR2 WILD-TYPE 89 155 137
'HCRTR2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S10266.  Gene #955: 'HCRTR2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
HCRTR2 MUTATED 3 2 1
HCRTR2 WILD-TYPE 179 131 71
'HCRTR2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0119 (Fisher's exact test), Q value = 0.11

Table S10267.  Gene #955: 'HCRTR2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
HCRTR2 MUTATED 0 5 0 2
HCRTR2 WILD-TYPE 112 91 92 184

Figure S2820.  Get High-res Image Gene #955: 'HCRTR2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'HCRTR2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0464 (Fisher's exact test), Q value = 0.23

Table S10268.  Gene #955: 'HCRTR2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
HCRTR2 MUTATED 0 1 2 0 0 0 4
HCRTR2 WILD-TYPE 60 49 47 40 63 125 95

Figure S2821.  Get High-res Image Gene #955: 'HCRTR2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'HCRTR2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.502 (Fisher's exact test), Q value = 0.83

Table S10269.  Gene #955: 'HCRTR2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
HCRTR2 MUTATED 3 0 0 4
HCRTR2 WILD-TYPE 127 78 68 192
'HCRTR2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0135 (Fisher's exact test), Q value = 0.11

Table S10270.  Gene #955: 'HCRTR2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
HCRTR2 MUTATED 0 1 2 0 4 0 0 0 0
HCRTR2 WILD-TYPE 40 61 26 80 65 48 43 28 74

Figure S2822.  Get High-res Image Gene #955: 'HCRTR2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'MTF1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0228 (Fisher's exact test), Q value = 0.15

Table S10271.  Gene #956: 'MTF1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
MTF1 MUTATED 2 0 0 3
MTF1 WILD-TYPE 44 58 64 40

Figure S2823.  Get High-res Image Gene #956: 'MTF1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'MTF1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.254 (Fisher's exact test), Q value = 0.58

Table S10272.  Gene #956: 'MTF1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
MTF1 MUTATED 3 1 1
MTF1 WILD-TYPE 48 82 76
'MTF1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.064 (Fisher's exact test), Q value = 0.27

Table S10273.  Gene #956: 'MTF1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
MTF1 MUTATED 8 1 1 0
MTF1 WILD-TYPE 170 182 100 20
'MTF1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.384 (Fisher's exact test), Q value = 0.71

Table S10274.  Gene #956: 'MTF1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
MTF1 MUTATED 2 0 3
MTF1 WILD-TYPE 85 80 97
'MTF1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.617 (Fisher's exact test), Q value = 0.92

Table S10275.  Gene #956: 'MTF1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
MTF1 MUTATED 1 2 4
MTF1 WILD-TYPE 88 158 134
'MTF1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.549 (Fisher's exact test), Q value = 0.87

Table S10276.  Gene #956: 'MTF1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
MTF1 MUTATED 5 1 1
MTF1 WILD-TYPE 177 132 71
'MTF1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0994 (Fisher's exact test), Q value = 0.35

Table S10277.  Gene #956: 'MTF1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
MTF1 MUTATED 0 1 4 5
MTF1 WILD-TYPE 112 95 88 181
'MTF1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.636 (Fisher's exact test), Q value = 0.93

Table S10278.  Gene #956: 'MTF1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
MTF1 MUTATED 2 1 2 0 1 1 3
MTF1 WILD-TYPE 58 49 47 40 62 124 96
'MTF1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.703 (Fisher's exact test), Q value = 0.97

Table S10279.  Gene #956: 'MTF1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
MTF1 MUTATED 3 2 0 5
MTF1 WILD-TYPE 127 76 68 191
'MTF1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.35 (Fisher's exact test), Q value = 0.68

Table S10280.  Gene #956: 'MTF1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
MTF1 MUTATED 1 4 0 1 3 0 0 0 1
MTF1 WILD-TYPE 39 58 28 79 66 48 43 28 73
'ZNF518B MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.888 (Fisher's exact test), Q value = 1

Table S10281.  Gene #957: 'ZNF518B MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ZNF518B MUTATED 0 1 1 1
ZNF518B WILD-TYPE 46 57 63 42
'ZNF518B MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.79 (Fisher's exact test), Q value = 1

Table S10282.  Gene #957: 'ZNF518B MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ZNF518B MUTATED 0 2 1
ZNF518B WILD-TYPE 51 81 76
'ZNF518B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.297 (Fisher's exact test), Q value = 0.63

Table S10283.  Gene #957: 'ZNF518B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ZNF518B MUTATED 5 5 2 2
ZNF518B WILD-TYPE 173 178 99 18
'ZNF518B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.636 (Fisher's exact test), Q value = 0.93

Table S10284.  Gene #957: 'ZNF518B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ZNF518B MUTATED 5 2 4
ZNF518B WILD-TYPE 82 78 96
'ZNF518B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.797 (Fisher's exact test), Q value = 1

Table S10285.  Gene #957: 'ZNF518B MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ZNF518B MUTATED 2 4 5
ZNF518B WILD-TYPE 87 156 133
'ZNF518B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.613 (Fisher's exact test), Q value = 0.91

Table S10286.  Gene #957: 'ZNF518B MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ZNF518B MUTATED 4 4 3
ZNF518B WILD-TYPE 178 129 69
'ZNF518B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.505 (Fisher's exact test), Q value = 0.83

Table S10287.  Gene #957: 'ZNF518B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ZNF518B MUTATED 4 4 3 3
ZNF518B WILD-TYPE 108 92 89 183
'ZNF518B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.107 (Fisher's exact test), Q value = 0.36

Table S10288.  Gene #957: 'ZNF518B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ZNF518B MUTATED 3 2 3 1 3 2 0
ZNF518B WILD-TYPE 57 48 46 39 60 123 99
'ZNF518B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.331 (Fisher's exact test), Q value = 0.66

Table S10289.  Gene #957: 'ZNF518B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ZNF518B MUTATED 5 4 2 3
ZNF518B WILD-TYPE 125 74 66 193
'ZNF518B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.511 (Fisher's exact test), Q value = 0.83

Table S10290.  Gene #957: 'ZNF518B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ZNF518B MUTATED 2 2 1 2 3 3 1 0 0
ZNF518B WILD-TYPE 38 60 27 78 66 45 42 28 74
'ZNF518B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.521 (Fisher's exact test), Q value = 0.84

Table S10291.  Gene #957: 'ZNF518B MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
ZNF518B MUTATED 2 0 2 1
ZNF518B WILD-TYPE 31 31 25 18
'ZNF518B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.38 (Fisher's exact test), Q value = 0.71

Table S10292.  Gene #957: 'ZNF518B MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
ZNF518B MUTATED 2 1 2 0
ZNF518B WILD-TYPE 52 9 22 22
'KIAA0195 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.91 (Fisher's exact test), Q value = 1

Table S10293.  Gene #958: 'KIAA0195 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
KIAA0195 MUTATED 1 1 2 0
KIAA0195 WILD-TYPE 45 57 62 43
'KIAA0195 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.834 (Fisher's exact test), Q value = 1

Table S10294.  Gene #958: 'KIAA0195 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
KIAA0195 MUTATED 1 1 2
KIAA0195 WILD-TYPE 50 82 75
'KIAA0195 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00091 (Fisher's exact test), Q value = 0.023

Table S10295.  Gene #958: 'KIAA0195 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
KIAA0195 MUTATED 15 3 0 0
KIAA0195 WILD-TYPE 163 180 101 20

Figure S2824.  Get High-res Image Gene #958: 'KIAA0195 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'KIAA0195 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.106 (Fisher's exact test), Q value = 0.36

Table S10296.  Gene #958: 'KIAA0195 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
KIAA0195 MUTATED 4 1 8
KIAA0195 WILD-TYPE 83 79 92
'KIAA0195 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0212 (Fisher's exact test), Q value = 0.15

Table S10297.  Gene #958: 'KIAA0195 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
KIAA0195 MUTATED 1 4 11
KIAA0195 WILD-TYPE 88 156 127

Figure S2825.  Get High-res Image Gene #958: 'KIAA0195 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'KIAA0195 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0132 (Fisher's exact test), Q value = 0.11

Table S10298.  Gene #958: 'KIAA0195 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
KIAA0195 MUTATED 13 3 0
KIAA0195 WILD-TYPE 169 130 72

Figure S2826.  Get High-res Image Gene #958: 'KIAA0195 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'KIAA0195 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0669 (Fisher's exact test), Q value = 0.28

Table S10299.  Gene #958: 'KIAA0195 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
KIAA0195 MUTATED 1 6 6 5
KIAA0195 WILD-TYPE 111 90 86 181
'KIAA0195 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S10300.  Gene #958: 'KIAA0195 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
KIAA0195 MUTATED 1 1 11 0 0 2 3
KIAA0195 WILD-TYPE 59 49 38 40 63 123 96

Figure S2827.  Get High-res Image Gene #958: 'KIAA0195 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'KIAA0195 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.11 (Fisher's exact test), Q value = 0.37

Table S10301.  Gene #958: 'KIAA0195 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
KIAA0195 MUTATED 9 3 1 4
KIAA0195 WILD-TYPE 121 75 67 192
'KIAA0195 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.146 (Fisher's exact test), Q value = 0.43

Table S10302.  Gene #958: 'KIAA0195 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
KIAA0195 MUTATED 1 5 2 1 5 1 0 1 1
KIAA0195 WILD-TYPE 39 57 26 79 64 47 43 27 73
'KIAA0195 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0801 (Fisher's exact test), Q value = 0.3

Table S10303.  Gene #958: 'KIAA0195 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
KIAA0195 MUTATED 3 0 0 2
KIAA0195 WILD-TYPE 30 31 27 17
'KIAA0195 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.758 (Fisher's exact test), Q value = 1

Table S10304.  Gene #958: 'KIAA0195 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
KIAA0195 MUTATED 4 0 1 0
KIAA0195 WILD-TYPE 50 10 23 22
'FAM20B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0302 (Fisher's exact test), Q value = 0.18

Table S10305.  Gene #959: 'FAM20B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
FAM20B MUTATED 7 0 3 0
FAM20B WILD-TYPE 171 183 98 20

Figure S2828.  Get High-res Image Gene #959: 'FAM20B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'FAM20B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0203 (Fisher's exact test), Q value = 0.14

Table S10306.  Gene #959: 'FAM20B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
FAM20B MUTATED 6 0 2
FAM20B WILD-TYPE 81 80 98

Figure S2829.  Get High-res Image Gene #959: 'FAM20B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'FAM20B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.278 (Fisher's exact test), Q value = 0.6

Table S10307.  Gene #959: 'FAM20B MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
FAM20B MUTATED 0 5 3
FAM20B WILD-TYPE 89 155 135
'FAM20B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.723 (Fisher's exact test), Q value = 0.99

Table S10308.  Gene #959: 'FAM20B MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
FAM20B MUTATED 3 3 2
FAM20B WILD-TYPE 179 130 70
'FAM20B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.824 (Fisher's exact test), Q value = 1

Table S10309.  Gene #959: 'FAM20B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
FAM20B MUTATED 2 3 2 3
FAM20B WILD-TYPE 110 93 90 183
'FAM20B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0198 (Fisher's exact test), Q value = 0.14

Table S10310.  Gene #959: 'FAM20B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
FAM20B MUTATED 2 0 4 0 1 0 3
FAM20B WILD-TYPE 58 50 45 40 62 125 96

Figure S2830.  Get High-res Image Gene #959: 'FAM20B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'FAM20B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.083 (Fisher's exact test), Q value = 0.31

Table S10311.  Gene #959: 'FAM20B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
FAM20B MUTATED 6 1 0 2
FAM20B WILD-TYPE 124 77 68 194
'FAM20B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.395 (Fisher's exact test), Q value = 0.72

Table S10312.  Gene #959: 'FAM20B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
FAM20B MUTATED 2 2 0 0 3 1 0 0 1
FAM20B WILD-TYPE 38 60 28 80 66 47 43 28 73
'FAM20B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0241 (Fisher's exact test), Q value = 0.16

Table S10313.  Gene #959: 'FAM20B MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
FAM20B MUTATED 1 0 0 3
FAM20B WILD-TYPE 32 31 27 16

Figure S2831.  Get High-res Image Gene #959: 'FAM20B MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'FAM20B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.672 (Fisher's exact test), Q value = 0.95

Table S10314.  Gene #959: 'FAM20B MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
FAM20B MUTATED 2 0 2 0
FAM20B WILD-TYPE 52 10 22 22
'EPHB1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0363 (Fisher's exact test), Q value = 0.2

Table S10315.  Gene #960: 'EPHB1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
EPHB1 MUTATED 1 0 1 4
EPHB1 WILD-TYPE 45 58 63 39

Figure S2832.  Get High-res Image Gene #960: 'EPHB1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'EPHB1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.58 (Fisher's exact test), Q value = 0.89

Table S10316.  Gene #960: 'EPHB1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
EPHB1 MUTATED 2 1 3
EPHB1 WILD-TYPE 49 82 74
'EPHB1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00117 (Fisher's exact test), Q value = 0.027

Table S10317.  Gene #960: 'EPHB1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
EPHB1 MUTATED 22 9 6 6
EPHB1 WILD-TYPE 156 174 95 14

Figure S2833.  Get High-res Image Gene #960: 'EPHB1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'EPHB1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.738 (Fisher's exact test), Q value = 1

Table S10318.  Gene #960: 'EPHB1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
EPHB1 MUTATED 13 10 11
EPHB1 WILD-TYPE 74 70 89
'EPHB1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0884 (Fisher's exact test), Q value = 0.32

Table S10319.  Gene #960: 'EPHB1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
EPHB1 MUTATED 8 10 19
EPHB1 WILD-TYPE 81 150 119
'EPHB1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.581 (Fisher's exact test), Q value = 0.89

Table S10320.  Gene #960: 'EPHB1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
EPHB1 MUTATED 20 10 7
EPHB1 WILD-TYPE 162 123 65
'EPHB1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00046 (Fisher's exact test), Q value = 0.015

Table S10321.  Gene #960: 'EPHB1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
EPHB1 MUTATED 11 15 11 5
EPHB1 WILD-TYPE 101 81 81 181

Figure S2834.  Get High-res Image Gene #960: 'EPHB1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'EPHB1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 2e-05 (Fisher's exact test), Q value = 0.0017

Table S10322.  Gene #960: 'EPHB1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
EPHB1 MUTATED 10 9 7 6 5 0 5
EPHB1 WILD-TYPE 50 41 42 34 58 125 94

Figure S2835.  Get High-res Image Gene #960: 'EPHB1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'EPHB1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0329 (Fisher's exact test), Q value = 0.19

Table S10323.  Gene #960: 'EPHB1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
EPHB1 MUTATED 20 7 3 13
EPHB1 WILD-TYPE 110 71 65 183

Figure S2836.  Get High-res Image Gene #960: 'EPHB1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'EPHB1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.145 (Fisher's exact test), Q value = 0.42

Table S10324.  Gene #960: 'EPHB1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
EPHB1 MUTATED 8 6 4 8 7 3 4 1 2
EPHB1 WILD-TYPE 32 56 24 72 62 45 39 27 72
'EPHB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.178 (Fisher's exact test), Q value = 0.48

Table S10325.  Gene #960: 'EPHB1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
EPHB1 MUTATED 5 4 1 5
EPHB1 WILD-TYPE 28 27 26 14
'EPHB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.52 (Fisher's exact test), Q value = 0.84

Table S10326.  Gene #960: 'EPHB1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
EPHB1 MUTATED 8 2 4 1
EPHB1 WILD-TYPE 46 8 20 21
'APBB1IP MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.255 (Fisher's exact test), Q value = 0.58

Table S10327.  Gene #961: 'APBB1IP MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
APBB1IP MUTATED 2 0 1 2
APBB1IP WILD-TYPE 44 58 63 41
'APBB1IP MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.249 (Fisher's exact test), Q value = 0.58

Table S10328.  Gene #961: 'APBB1IP MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
APBB1IP MUTATED 3 1 1
APBB1IP WILD-TYPE 48 82 76
'APBB1IP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.244 (Fisher's exact test), Q value = 0.57

Table S10329.  Gene #961: 'APBB1IP MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
APBB1IP MUTATED 11 4 4 0
APBB1IP WILD-TYPE 167 179 97 20
'APBB1IP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.403 (Fisher's exact test), Q value = 0.73

Table S10330.  Gene #961: 'APBB1IP MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
APBB1IP MUTATED 5 2 7
APBB1IP WILD-TYPE 82 78 93
'APBB1IP MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.178 (Fisher's exact test), Q value = 0.48

Table S10331.  Gene #961: 'APBB1IP MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
APBB1IP MUTATED 1 9 4
APBB1IP WILD-TYPE 88 151 134
'APBB1IP MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.715 (Fisher's exact test), Q value = 0.98

Table S10332.  Gene #961: 'APBB1IP MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
APBB1IP MUTATED 5 6 3
APBB1IP WILD-TYPE 177 127 69
'APBB1IP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.59 (Fisher's exact test), Q value = 0.89

Table S10333.  Gene #961: 'APBB1IP MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
APBB1IP MUTATED 4 3 6 6
APBB1IP WILD-TYPE 108 93 86 180
'APBB1IP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.198 (Fisher's exact test), Q value = 0.5

Table S10334.  Gene #961: 'APBB1IP MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
APBB1IP MUTATED 2 3 4 1 3 1 5
APBB1IP WILD-TYPE 58 47 45 39 60 124 94
'APBB1IP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.105 (Fisher's exact test), Q value = 0.36

Table S10335.  Gene #961: 'APBB1IP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
APBB1IP MUTATED 8 5 1 4
APBB1IP WILD-TYPE 122 73 67 192
'APBB1IP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.307 (Fisher's exact test), Q value = 0.64

Table S10336.  Gene #961: 'APBB1IP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
APBB1IP MUTATED 3 2 1 4 1 0 2 3 2
APBB1IP WILD-TYPE 37 60 27 76 68 48 41 25 72
'APBB1IP MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.692 (Fisher's exact test), Q value = 0.97

Table S10337.  Gene #961: 'APBB1IP MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
APBB1IP MUTATED 1 2 1 2
APBB1IP WILD-TYPE 32 29 26 17
'APBB1IP MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.562 (Fisher's exact test), Q value = 0.87

Table S10338.  Gene #961: 'APBB1IP MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
APBB1IP MUTATED 5 0 1 0
APBB1IP WILD-TYPE 49 10 23 22
'TXNDC17 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.791 (Fisher's exact test), Q value = 1

Table S10339.  Gene #962: 'TXNDC17 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
TXNDC17 MUTATED 3 1 1 0
TXNDC17 WILD-TYPE 175 182 100 20
'TXNDC17 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.278 (Fisher's exact test), Q value = 0.61

Table S10340.  Gene #962: 'TXNDC17 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
TXNDC17 MUTATED 0 2 3
TXNDC17 WILD-TYPE 87 78 97
'TXNDC17 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.552 (Fisher's exact test), Q value = 0.87

Table S10341.  Gene #962: 'TXNDC17 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
TXNDC17 MUTATED 0 3 1
TXNDC17 WILD-TYPE 89 157 137
'TXNDC17 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.829 (Fisher's exact test), Q value = 1

Table S10342.  Gene #962: 'TXNDC17 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
TXNDC17 MUTATED 2 2 0
TXNDC17 WILD-TYPE 180 131 72
'TXNDC17 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0559 (Fisher's exact test), Q value = 0.26

Table S10343.  Gene #962: 'TXNDC17 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
TXNDC17 MUTATED 1 3 1 0
TXNDC17 WILD-TYPE 111 93 91 186
'TXNDC17 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0133 (Fisher's exact test), Q value = 0.11

Table S10344.  Gene #962: 'TXNDC17 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
TXNDC17 MUTATED 1 0 3 0 1 0 0
TXNDC17 WILD-TYPE 59 50 46 40 62 125 99

Figure S2837.  Get High-res Image Gene #962: 'TXNDC17 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'TXNDC17 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00829 (Fisher's exact test), Q value = 0.085

Table S10345.  Gene #962: 'TXNDC17 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
TXNDC17 MUTATED 5 0 0 0
TXNDC17 WILD-TYPE 125 78 68 196

Figure S2838.  Get High-res Image Gene #962: 'TXNDC17 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'TXNDC17 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.277 (Fisher's exact test), Q value = 0.6

Table S10346.  Gene #962: 'TXNDC17 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
TXNDC17 MUTATED 2 1 0 0 1 1 0 0 0
TXNDC17 WILD-TYPE 38 61 28 80 68 47 43 28 74
'HPSE MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00782 (Fisher's exact test), Q value = 0.083

Table S10347.  Gene #963: 'HPSE MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
HPSE MUTATED 9 0 2 0
HPSE WILD-TYPE 169 183 99 20

Figure S2839.  Get High-res Image Gene #963: 'HPSE MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'HPSE MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0945 (Fisher's exact test), Q value = 0.34

Table S10348.  Gene #963: 'HPSE MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
HPSE MUTATED 5 0 4
HPSE WILD-TYPE 82 80 96
'HPSE MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.901 (Fisher's exact test), Q value = 1

Table S10349.  Gene #963: 'HPSE MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
HPSE MUTATED 1 4 3
HPSE WILD-TYPE 88 156 135
'HPSE MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.642 (Fisher's exact test), Q value = 0.93

Table S10350.  Gene #963: 'HPSE MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
HPSE MUTATED 3 4 1
HPSE WILD-TYPE 179 129 71
'HPSE MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00341 (Fisher's exact test), Q value = 0.053

Table S10351.  Gene #963: 'HPSE MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
HPSE MUTATED 0 7 2 2
HPSE WILD-TYPE 112 89 90 184

Figure S2840.  Get High-res Image Gene #963: 'HPSE MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'HPSE MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0156 (Fisher's exact test), Q value = 0.12

Table S10352.  Gene #963: 'HPSE MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
HPSE MUTATED 0 3 3 2 1 0 2
HPSE WILD-TYPE 60 47 46 38 62 125 97

Figure S2841.  Get High-res Image Gene #963: 'HPSE MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'HPSE MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.324 (Fisher's exact test), Q value = 0.65

Table S10353.  Gene #963: 'HPSE MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
HPSE MUTATED 6 1 1 3
HPSE WILD-TYPE 124 77 67 193
'HPSE MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0545 (Fisher's exact test), Q value = 0.25

Table S10354.  Gene #963: 'HPSE MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
HPSE MUTATED 3 1 3 1 2 0 0 0 1
HPSE WILD-TYPE 37 61 25 79 67 48 43 28 73
'HPSE MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.268 (Fisher's exact test), Q value = 0.59

Table S10355.  Gene #963: 'HPSE MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
HPSE MUTATED 1 0 1 2
HPSE WILD-TYPE 32 31 26 17
'HPSE MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.129 (Fisher's exact test), Q value = 0.4

Table S10356.  Gene #963: 'HPSE MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
HPSE MUTATED 1 0 3 0
HPSE WILD-TYPE 53 10 21 22
'SLC39A2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.309 (Fisher's exact test), Q value = 0.64

Table S10357.  Gene #964: 'SLC39A2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
SLC39A2 MUTATED 1 1 0 2
SLC39A2 WILD-TYPE 45 57 64 41
'SLC39A2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.176 (Fisher's exact test), Q value = 0.48

Table S10358.  Gene #964: 'SLC39A2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
SLC39A2 MUTATED 2 0 2
SLC39A2 WILD-TYPE 49 83 75
'SLC39A2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.414 (Fisher's exact test), Q value = 0.74

Table S10359.  Gene #964: 'SLC39A2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
SLC39A2 MUTATED 5 3 1 1
SLC39A2 WILD-TYPE 173 180 100 19
'SLC39A2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0819 (Fisher's exact test), Q value = 0.31

Table S10360.  Gene #964: 'SLC39A2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
SLC39A2 MUTATED 4 2 0
SLC39A2 WILD-TYPE 83 78 100
'SLC39A2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.733 (Fisher's exact test), Q value = 1

Table S10361.  Gene #964: 'SLC39A2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
SLC39A2 MUTATED 1 3 4
SLC39A2 WILD-TYPE 88 157 134
'SLC39A2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.512 (Fisher's exact test), Q value = 0.83

Table S10362.  Gene #964: 'SLC39A2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
SLC39A2 MUTATED 4 4 0
SLC39A2 WILD-TYPE 178 129 72
'SLC39A2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S10363.  Gene #964: 'SLC39A2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
SLC39A2 MUTATED 2 2 2 4
SLC39A2 WILD-TYPE 110 94 90 182
'SLC39A2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.308 (Fisher's exact test), Q value = 0.64

Table S10364.  Gene #964: 'SLC39A2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
SLC39A2 MUTATED 2 2 1 2 0 1 2
SLC39A2 WILD-TYPE 58 48 48 38 63 124 97
'SLC39A2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.863 (Fisher's exact test), Q value = 1

Table S10365.  Gene #964: 'SLC39A2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
SLC39A2 MUTATED 2 1 2 4
SLC39A2 WILD-TYPE 128 77 66 192
'SLC39A2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.584 (Fisher's exact test), Q value = 0.89

Table S10366.  Gene #964: 'SLC39A2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
SLC39A2 MUTATED 0 3 0 1 2 0 2 0 1
SLC39A2 WILD-TYPE 40 59 28 79 67 48 41 28 73
'C9ORF71 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.122 (Fisher's exact test), Q value = 0.39

Table S10367.  Gene #965: 'C9ORF71 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
C9ORF71 MUTATED 4 0 0 0
C9ORF71 WILD-TYPE 174 183 101 20
'C9ORF71 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.389 (Fisher's exact test), Q value = 0.72

Table S10368.  Gene #965: 'C9ORF71 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
C9ORF71 MUTATED 1 0 3
C9ORF71 WILD-TYPE 86 80 97
'C9ORF71 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0185 (Fisher's exact test), Q value = 0.14

Table S10369.  Gene #965: 'C9ORF71 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
C9ORF71 MUTATED 0 0 4
C9ORF71 WILD-TYPE 89 160 134

Figure S2842.  Get High-res Image Gene #965: 'C9ORF71 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'C9ORF71 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.18 (Fisher's exact test), Q value = 0.48

Table S10370.  Gene #965: 'C9ORF71 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
C9ORF71 MUTATED 4 0 0
C9ORF71 WILD-TYPE 178 133 72
'C9ORF71 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0374 (Fisher's exact test), Q value = 0.2

Table S10371.  Gene #965: 'C9ORF71 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
C9ORF71 MUTATED 0 2 2 0
C9ORF71 WILD-TYPE 112 94 90 186

Figure S2843.  Get High-res Image Gene #965: 'C9ORF71 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'C9ORF71 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00554 (Fisher's exact test), Q value = 0.067

Table S10372.  Gene #965: 'C9ORF71 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
C9ORF71 MUTATED 0 0 3 0 1 0 0
C9ORF71 WILD-TYPE 60 50 46 40 62 125 99

Figure S2844.  Get High-res Image Gene #965: 'C9ORF71 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'C9ORF71 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.598 (Fisher's exact test), Q value = 0.9

Table S10373.  Gene #965: 'C9ORF71 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
C9ORF71 MUTATED 2 1 0 1
C9ORF71 WILD-TYPE 128 77 68 195
'C9ORF71 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.247 (Fisher's exact test), Q value = 0.57

Table S10374.  Gene #965: 'C9ORF71 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
C9ORF71 MUTATED 0 1 0 0 1 0 2 0 0
C9ORF71 WILD-TYPE 40 61 28 80 68 48 41 28 74
'STYK1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.719 (Fisher's exact test), Q value = 0.99

Table S10375.  Gene #966: 'STYK1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
STYK1 MUTATED 4 2 1 0
STYK1 WILD-TYPE 174 181 100 20
'STYK1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.592 (Fisher's exact test), Q value = 0.9

Table S10376.  Gene #966: 'STYK1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
STYK1 MUTATED 1 3 2
STYK1 WILD-TYPE 86 77 98
'STYK1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.388 (Fisher's exact test), Q value = 0.72

Table S10377.  Gene #966: 'STYK1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
STYK1 MUTATED 0 4 2
STYK1 WILD-TYPE 89 156 136
'STYK1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.289 (Fisher's exact test), Q value = 0.62

Table S10378.  Gene #966: 'STYK1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
STYK1 MUTATED 2 4 0
STYK1 WILD-TYPE 180 129 72
'STYK1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.174 (Fisher's exact test), Q value = 0.47

Table S10379.  Gene #966: 'STYK1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
STYK1 MUTATED 4 1 1 1
STYK1 WILD-TYPE 108 95 91 185
'STYK1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00705 (Fisher's exact test), Q value = 0.077

Table S10380.  Gene #966: 'STYK1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
STYK1 MUTATED 4 0 2 0 0 0 1
STYK1 WILD-TYPE 56 50 47 40 63 125 98

Figure S2845.  Get High-res Image Gene #966: 'STYK1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'STYK1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.862 (Fisher's exact test), Q value = 1

Table S10381.  Gene #966: 'STYK1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
STYK1 MUTATED 3 1 1 2
STYK1 WILD-TYPE 127 77 67 194
'STYK1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.723 (Fisher's exact test), Q value = 0.99

Table S10382.  Gene #966: 'STYK1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
STYK1 MUTATED 1 0 0 2 2 1 1 0 0
STYK1 WILD-TYPE 39 62 28 78 67 47 42 28 74
'LGR4 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.221 (Fisher's exact test), Q value = 0.53

Table S10383.  Gene #967: 'LGR4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
LGR4 MUTATED 2 1 0 2
LGR4 WILD-TYPE 44 57 64 41
'LGR4 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.638 (Fisher's exact test), Q value = 0.93

Table S10384.  Gene #967: 'LGR4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
LGR4 MUTATED 1 1 3
LGR4 WILD-TYPE 50 82 74
'LGR4 MUTATION STATUS' versus 'CN_CNMF'

P value = 2e-05 (Fisher's exact test), Q value = 0.0017

Table S10385.  Gene #967: 'LGR4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
LGR4 MUTATED 17 0 0 0
LGR4 WILD-TYPE 161 183 101 20

Figure S2846.  Get High-res Image Gene #967: 'LGR4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'LGR4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0194 (Fisher's exact test), Q value = 0.14

Table S10386.  Gene #967: 'LGR4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
LGR4 MUTATED 3 0 8
LGR4 WILD-TYPE 84 80 92

Figure S2847.  Get High-res Image Gene #967: 'LGR4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'LGR4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.736 (Fisher's exact test), Q value = 1

Table S10387.  Gene #967: 'LGR4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
LGR4 MUTATED 2 6 6
LGR4 WILD-TYPE 87 154 132
'LGR4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.822 (Fisher's exact test), Q value = 1

Table S10388.  Gene #967: 'LGR4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
LGR4 MUTATED 6 6 2
LGR4 WILD-TYPE 176 127 70
'LGR4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0208 (Fisher's exact test), Q value = 0.15

Table S10389.  Gene #967: 'LGR4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
LGR4 MUTATED 0 7 3 7
LGR4 WILD-TYPE 112 89 89 179

Figure S2848.  Get High-res Image Gene #967: 'LGR4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'LGR4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.019 (Fisher's exact test), Q value = 0.14

Table S10390.  Gene #967: 'LGR4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
LGR4 MUTATED 1 3 6 1 0 2 4
LGR4 WILD-TYPE 59 47 43 39 63 123 95

Figure S2849.  Get High-res Image Gene #967: 'LGR4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'LGR4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.016 (Fisher's exact test), Q value = 0.13

Table S10391.  Gene #967: 'LGR4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
LGR4 MUTATED 9 0 0 8
LGR4 WILD-TYPE 121 78 68 188

Figure S2850.  Get High-res Image Gene #967: 'LGR4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'LGR4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.235 (Fisher's exact test), Q value = 0.56

Table S10392.  Gene #967: 'LGR4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
LGR4 MUTATED 3 1 1 2 6 0 2 0 2
LGR4 WILD-TYPE 37 61 27 78 63 48 41 28 72
'C14ORF28 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.175 (Fisher's exact test), Q value = 0.47

Table S10393.  Gene #968: 'C14ORF28 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
C14ORF28 MUTATED 4 0 1 0
C14ORF28 WILD-TYPE 174 183 100 20
'C14ORF28 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.513 (Fisher's exact test), Q value = 0.83

Table S10394.  Gene #968: 'C14ORF28 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
C14ORF28 MUTATED 2 0 1
C14ORF28 WILD-TYPE 85 80 99
'C14ORF28 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.137 (Fisher's exact test), Q value = 0.41

Table S10395.  Gene #968: 'C14ORF28 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
C14ORF28 MUTATED 0 1 4
C14ORF28 WILD-TYPE 89 159 134
'C14ORF28 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.505 (Fisher's exact test), Q value = 0.83

Table S10396.  Gene #968: 'C14ORF28 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
C14ORF28 MUTATED 4 1 0
C14ORF28 WILD-TYPE 178 132 72
'C14ORF28 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.456 (Fisher's exact test), Q value = 0.78

Table S10397.  Gene #968: 'C14ORF28 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
C14ORF28 MUTATED 0 1 2 2
C14ORF28 WILD-TYPE 112 95 90 184
'C14ORF28 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.293 (Fisher's exact test), Q value = 0.62

Table S10398.  Gene #968: 'C14ORF28 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
C14ORF28 MUTATED 1 0 1 0 2 0 1
C14ORF28 WILD-TYPE 59 50 48 40 61 125 98
'C14ORF28 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.344 (Fisher's exact test), Q value = 0.67

Table S10399.  Gene #968: 'C14ORF28 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
C14ORF28 MUTATED 1 2 0 1
C14ORF28 WILD-TYPE 129 76 68 195
'C14ORF28 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.421 (Fisher's exact test), Q value = 0.75

Table S10400.  Gene #968: 'C14ORF28 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
C14ORF28 MUTATED 0 2 0 0 1 0 1 0 0
C14ORF28 WILD-TYPE 40 60 28 80 68 48 42 28 74
'ACTL6A MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0272 (Fisher's exact test), Q value = 0.17

Table S10401.  Gene #969: 'ACTL6A MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ACTL6A MUTATED 3 0 0 2
ACTL6A WILD-TYPE 43 58 64 41

Figure S2851.  Get High-res Image Gene #969: 'ACTL6A MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'ACTL6A MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00631 (Fisher's exact test), Q value = 0.073

Table S10402.  Gene #969: 'ACTL6A MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ACTL6A MUTATED 4 0 1
ACTL6A WILD-TYPE 47 83 76

Figure S2852.  Get High-res Image Gene #969: 'ACTL6A MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'ACTL6A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.022 (Fisher's exact test), Q value = 0.15

Table S10403.  Gene #969: 'ACTL6A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ACTL6A MUTATED 6 0 0 0
ACTL6A WILD-TYPE 172 183 101 20

Figure S2853.  Get High-res Image Gene #969: 'ACTL6A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ACTL6A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.142 (Fisher's exact test), Q value = 0.42

Table S10404.  Gene #969: 'ACTL6A MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ACTL6A MUTATED 0 2 5
ACTL6A WILD-TYPE 89 158 133
'ACTL6A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.486 (Fisher's exact test), Q value = 0.81

Table S10405.  Gene #969: 'ACTL6A MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ACTL6A MUTATED 4 1 2
ACTL6A WILD-TYPE 178 132 70
'ACTL6A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.144 (Fisher's exact test), Q value = 0.42

Table S10406.  Gene #969: 'ACTL6A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ACTL6A MUTATED 0 0 2 5
ACTL6A WILD-TYPE 112 96 90 181
'ACTL6A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0585 (Fisher's exact test), Q value = 0.26

Table S10407.  Gene #969: 'ACTL6A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ACTL6A MUTATED 1 0 2 0 0 0 4
ACTL6A WILD-TYPE 59 50 47 40 63 125 95
'ACTL6A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.783 (Fisher's exact test), Q value = 1

Table S10408.  Gene #969: 'ACTL6A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ACTL6A MUTATED 1 1 0 4
ACTL6A WILD-TYPE 129 77 68 192
'ACTL6A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.049 (Fisher's exact test), Q value = 0.24

Table S10409.  Gene #969: 'ACTL6A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ACTL6A MUTATED 0 2 0 0 4 0 0 0 0
ACTL6A WILD-TYPE 40 60 28 80 65 48 43 28 74

Figure S2854.  Get High-res Image Gene #969: 'ACTL6A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'UPF3A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0124 (Fisher's exact test), Q value = 0.11

Table S10410.  Gene #970: 'UPF3A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
UPF3A MUTATED 8 0 1 0
UPF3A WILD-TYPE 170 183 100 20

Figure S2855.  Get High-res Image Gene #970: 'UPF3A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'UPF3A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.637 (Fisher's exact test), Q value = 0.93

Table S10411.  Gene #970: 'UPF3A MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
UPF3A MUTATED 2 1 4
UPF3A WILD-TYPE 85 79 96
'UPF3A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.847 (Fisher's exact test), Q value = 1

Table S10412.  Gene #970: 'UPF3A MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
UPF3A MUTATED 1 3 1
UPF3A WILD-TYPE 88 157 137
'UPF3A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S10413.  Gene #970: 'UPF3A MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
UPF3A MUTATED 2 2 1
UPF3A WILD-TYPE 180 131 71
'UPF3A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.148 (Fisher's exact test), Q value = 0.43

Table S10414.  Gene #970: 'UPF3A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
UPF3A MUTATED 0 4 1 4
UPF3A WILD-TYPE 112 92 91 182
'UPF3A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00378 (Fisher's exact test), Q value = 0.056

Table S10415.  Gene #970: 'UPF3A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
UPF3A MUTATED 0 0 5 0 0 1 3
UPF3A WILD-TYPE 60 50 44 40 63 124 96

Figure S2856.  Get High-res Image Gene #970: 'UPF3A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'UPF3A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.735 (Fisher's exact test), Q value = 1

Table S10416.  Gene #970: 'UPF3A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
UPF3A MUTATED 3 1 0 5
UPF3A WILD-TYPE 127 77 68 191
'UPF3A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0201 (Fisher's exact test), Q value = 0.14

Table S10417.  Gene #970: 'UPF3A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
UPF3A MUTATED 0 1 0 0 6 0 0 0 2
UPF3A WILD-TYPE 40 61 28 80 63 48 43 28 72

Figure S2857.  Get High-res Image Gene #970: 'UPF3A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'MDH1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.869 (Fisher's exact test), Q value = 1

Table S10418.  Gene #971: 'MDH1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
MDH1 MUTATED 4 3 1 0
MDH1 WILD-TYPE 174 180 100 20
'MDH1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.344 (Fisher's exact test), Q value = 0.67

Table S10419.  Gene #971: 'MDH1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
MDH1 MUTATED 4 2 1
MDH1 WILD-TYPE 83 78 99
'MDH1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.383 (Fisher's exact test), Q value = 0.71

Table S10420.  Gene #971: 'MDH1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
MDH1 MUTATED 1 2 5
MDH1 WILD-TYPE 88 158 133
'MDH1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S10421.  Gene #971: 'MDH1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
MDH1 MUTATED 4 3 1
MDH1 WILD-TYPE 178 130 71
'MDH1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.309 (Fisher's exact test), Q value = 0.64

Table S10422.  Gene #971: 'MDH1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
MDH1 MUTATED 2 2 3 1
MDH1 WILD-TYPE 110 94 89 185
'MDH1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0775 (Fisher's exact test), Q value = 0.3

Table S10423.  Gene #971: 'MDH1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
MDH1 MUTATED 1 3 1 0 2 0 1
MDH1 WILD-TYPE 59 47 48 40 61 125 98
'MDH1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.567 (Fisher's exact test), Q value = 0.87

Table S10424.  Gene #971: 'MDH1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
MDH1 MUTATED 4 1 1 2
MDH1 WILD-TYPE 126 77 67 194
'MDH1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.128 (Fisher's exact test), Q value = 0.4

Table S10425.  Gene #971: 'MDH1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
MDH1 MUTATED 2 1 0 0 1 0 3 0 1
MDH1 WILD-TYPE 38 61 28 80 68 48 40 28 73
'MDH1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.11 (Fisher's exact test), Q value = 0.37

Table S10426.  Gene #971: 'MDH1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
MDH1 MUTATED 3 0 0 0
MDH1 WILD-TYPE 30 31 27 19
'MDH1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.843 (Fisher's exact test), Q value = 1

Table S10427.  Gene #971: 'MDH1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
MDH1 MUTATED 2 0 0 1
MDH1 WILD-TYPE 52 10 24 21
'MYH11 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S10428.  Gene #972: 'MYH11 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
MYH11 MUTATED 9 1 0 8
MYH11 WILD-TYPE 37 57 64 35

Figure S2858.  Get High-res Image Gene #972: 'MYH11 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'MYH11 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S10429.  Gene #972: 'MYH11 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
MYH11 MUTATED 13 2 3
MYH11 WILD-TYPE 38 81 74

Figure S2859.  Get High-res Image Gene #972: 'MYH11 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'MYH11 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00014 (Fisher's exact test), Q value = 0.0066

Table S10430.  Gene #972: 'MYH11 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
MYH11 MUTATED 25 5 3 2
MYH11 WILD-TYPE 153 178 98 18

Figure S2860.  Get High-res Image Gene #972: 'MYH11 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'MYH11 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.279 (Fisher's exact test), Q value = 0.61

Table S10431.  Gene #972: 'MYH11 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
MYH11 MUTATED 5 2 8
MYH11 WILD-TYPE 82 78 92
'MYH11 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.156 (Fisher's exact test), Q value = 0.44

Table S10432.  Gene #972: 'MYH11 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
MYH11 MUTATED 5 7 14
MYH11 WILD-TYPE 84 153 124
'MYH11 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.831 (Fisher's exact test), Q value = 1

Table S10433.  Gene #972: 'MYH11 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
MYH11 MUTATED 14 8 4
MYH11 WILD-TYPE 168 125 68
'MYH11 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00393 (Fisher's exact test), Q value = 0.057

Table S10434.  Gene #972: 'MYH11 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
MYH11 MUTATED 3 2 10 20
MYH11 WILD-TYPE 109 94 82 166

Figure S2861.  Get High-res Image Gene #972: 'MYH11 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'MYH11 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00047 (Fisher's exact test), Q value = 0.015

Table S10435.  Gene #972: 'MYH11 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
MYH11 MUTATED 3 2 8 1 2 3 16
MYH11 WILD-TYPE 57 48 41 39 61 122 83

Figure S2862.  Get High-res Image Gene #972: 'MYH11 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'MYH11 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.117 (Fisher's exact test), Q value = 0.38

Table S10436.  Gene #972: 'MYH11 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
MYH11 MUTATED 10 4 1 19
MYH11 WILD-TYPE 120 74 67 177
'MYH11 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00041 (Fisher's exact test), Q value = 0.013

Table S10437.  Gene #972: 'MYH11 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
MYH11 MUTATED 4 5 2 4 15 0 1 0 3
MYH11 WILD-TYPE 36 57 26 76 54 48 42 28 71

Figure S2863.  Get High-res Image Gene #972: 'MYH11 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'MYH11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00689 (Fisher's exact test), Q value = 0.076

Table S10438.  Gene #972: 'MYH11 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
MYH11 MUTATED 3 0 0 4
MYH11 WILD-TYPE 30 31 27 15

Figure S2864.  Get High-res Image Gene #972: 'MYH11 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'MYH11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.339 (Fisher's exact test), Q value = 0.67

Table S10439.  Gene #972: 'MYH11 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
MYH11 MUTATED 6 0 1 0
MYH11 WILD-TYPE 48 10 23 22
'KLF11 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.755 (Fisher's exact test), Q value = 1

Table S10440.  Gene #973: 'KLF11 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
KLF11 MUTATED 4 2 2 0
KLF11 WILD-TYPE 174 181 99 20
'KLF11 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.252 (Fisher's exact test), Q value = 0.58

Table S10441.  Gene #973: 'KLF11 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
KLF11 MUTATED 2 0 4
KLF11 WILD-TYPE 85 80 96
'KLF11 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.636 (Fisher's exact test), Q value = 0.93

Table S10442.  Gene #973: 'KLF11 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
KLF11 MUTATED 0 3 2
KLF11 WILD-TYPE 89 157 136
'KLF11 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.718 (Fisher's exact test), Q value = 0.99

Table S10443.  Gene #973: 'KLF11 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
KLF11 MUTATED 3 2 0
KLF11 WILD-TYPE 179 131 72
'KLF11 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.559 (Fisher's exact test), Q value = 0.87

Table S10444.  Gene #973: 'KLF11 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
KLF11 MUTATED 1 3 2 2
KLF11 WILD-TYPE 111 93 90 184
'KLF11 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.329 (Fisher's exact test), Q value = 0.66

Table S10445.  Gene #973: 'KLF11 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
KLF11 MUTATED 0 2 2 1 1 1 1
KLF11 WILD-TYPE 60 48 47 39 62 124 98
'KLF11 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.269 (Fisher's exact test), Q value = 0.59

Table S10446.  Gene #973: 'KLF11 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
KLF11 MUTATED 2 3 0 2
KLF11 WILD-TYPE 128 75 68 194
'KLF11 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.105 (Fisher's exact test), Q value = 0.36

Table S10447.  Gene #973: 'KLF11 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
KLF11 MUTATED 0 4 0 1 1 0 0 1 0
KLF11 WILD-TYPE 40 58 28 79 68 48 43 27 74
'MED12L MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0243 (Fisher's exact test), Q value = 0.16

Table S10448.  Gene #974: 'MED12L MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
MED12L MUTATED 5 1 1 5
MED12L WILD-TYPE 41 57 63 38

Figure S2865.  Get High-res Image Gene #974: 'MED12L MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'MED12L MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0272 (Fisher's exact test), Q value = 0.17

Table S10449.  Gene #974: 'MED12L MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
MED12L MUTATED 7 3 2
MED12L WILD-TYPE 44 80 75

Figure S2866.  Get High-res Image Gene #974: 'MED12L MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'MED12L MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00102 (Fisher's exact test), Q value = 0.025

Table S10450.  Gene #974: 'MED12L MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
MED12L MUTATED 22 6 2 1
MED12L WILD-TYPE 156 177 99 19

Figure S2867.  Get High-res Image Gene #974: 'MED12L MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'MED12L MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0305 (Fisher's exact test), Q value = 0.18

Table S10451.  Gene #974: 'MED12L MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
MED12L MUTATED 8 1 10
MED12L WILD-TYPE 79 79 90

Figure S2868.  Get High-res Image Gene #974: 'MED12L MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'MED12L MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.266 (Fisher's exact test), Q value = 0.59

Table S10452.  Gene #974: 'MED12L MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
MED12L MUTATED 2 10 10
MED12L WILD-TYPE 87 150 128
'MED12L MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.549 (Fisher's exact test), Q value = 0.87

Table S10453.  Gene #974: 'MED12L MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
MED12L MUTATED 12 8 2
MED12L WILD-TYPE 170 125 70
'MED12L MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.101 (Fisher's exact test), Q value = 0.35

Table S10454.  Gene #974: 'MED12L MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
MED12L MUTATED 2 8 7 14
MED12L WILD-TYPE 110 88 85 172
'MED12L MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.267 (Fisher's exact test), Q value = 0.59

Table S10455.  Gene #974: 'MED12L MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
MED12L MUTATED 2 4 6 2 4 4 9
MED12L WILD-TYPE 58 46 43 38 59 121 90
'MED12L MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0742 (Fisher's exact test), Q value = 0.29

Table S10456.  Gene #974: 'MED12L MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
MED12L MUTATED 10 5 0 14
MED12L WILD-TYPE 120 73 68 182
'MED12L MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.929 (Fisher's exact test), Q value = 1

Table S10457.  Gene #974: 'MED12L MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
MED12L MUTATED 3 4 2 4 7 3 2 1 3
MED12L WILD-TYPE 37 58 26 76 62 45 41 27 71
'MED12L MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0645 (Fisher's exact test), Q value = 0.28

Table S10458.  Gene #974: 'MED12L MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
MED12L MUTATED 0 2 0 2
MED12L WILD-TYPE 33 29 27 17
'MED12L MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S10459.  Gene #974: 'MED12L MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
MED12L MUTATED 2 0 1 1
MED12L WILD-TYPE 52 10 23 21
'ZNF620 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0646 (Fisher's exact test), Q value = 0.28

Table S10460.  Gene #975: 'ZNF620 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ZNF620 MUTATED 1 0 0 2
ZNF620 WILD-TYPE 45 58 64 41
'ZNF620 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.183 (Fisher's exact test), Q value = 0.48

Table S10461.  Gene #975: 'ZNF620 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ZNF620 MUTATED 2 0 1
ZNF620 WILD-TYPE 49 83 76
'ZNF620 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00158 (Fisher's exact test), Q value = 0.033

Table S10462.  Gene #975: 'ZNF620 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ZNF620 MUTATED 8 0 0 1
ZNF620 WILD-TYPE 170 183 101 19

Figure S2869.  Get High-res Image Gene #975: 'ZNF620 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ZNF620 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.385 (Fisher's exact test), Q value = 0.71

Table S10463.  Gene #975: 'ZNF620 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ZNF620 MUTATED 2 0 3
ZNF620 WILD-TYPE 85 80 97
'ZNF620 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.659 (Fisher's exact test), Q value = 0.95

Table S10464.  Gene #975: 'ZNF620 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ZNF620 MUTATED 2 2 4
ZNF620 WILD-TYPE 87 158 134
'ZNF620 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.327 (Fisher's exact test), Q value = 0.66

Table S10465.  Gene #975: 'ZNF620 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ZNF620 MUTATED 6 1 1
ZNF620 WILD-TYPE 176 132 71
'ZNF620 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0489 (Fisher's exact test), Q value = 0.24

Table S10466.  Gene #975: 'ZNF620 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ZNF620 MUTATED 0 5 1 3
ZNF620 WILD-TYPE 112 91 91 183

Figure S2870.  Get High-res Image Gene #975: 'ZNF620 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'ZNF620 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.126 (Fisher's exact test), Q value = 0.39

Table S10467.  Gene #975: 'ZNF620 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ZNF620 MUTATED 0 2 2 1 1 0 3
ZNF620 WILD-TYPE 60 48 47 39 62 125 96
'ZNF620 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.6 (Fisher's exact test), Q value = 0.9

Table S10468.  Gene #975: 'ZNF620 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ZNF620 MUTATED 4 1 0 4
ZNF620 WILD-TYPE 126 77 68 192
'ZNF620 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.33 (Fisher's exact test), Q value = 0.66

Table S10469.  Gene #975: 'ZNF620 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ZNF620 MUTATED 2 1 1 0 3 0 1 0 1
ZNF620 WILD-TYPE 38 61 27 80 66 48 42 28 73
'UGT1A7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.595 (Fisher's exact test), Q value = 0.9

Table S10470.  Gene #976: 'UGT1A7 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
UGT1A7 MUTATED 5 2 1 0
UGT1A7 WILD-TYPE 173 181 100 20
'UGT1A7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.877 (Fisher's exact test), Q value = 1

Table S10471.  Gene #976: 'UGT1A7 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
UGT1A7 MUTATED 2 1 3
UGT1A7 WILD-TYPE 85 79 97
'UGT1A7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.309 (Fisher's exact test), Q value = 0.64

Table S10472.  Gene #976: 'UGT1A7 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
UGT1A7 MUTATED 0 4 4
UGT1A7 WILD-TYPE 89 156 134
'UGT1A7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S10473.  Gene #976: 'UGT1A7 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
UGT1A7 MUTATED 4 3 1
UGT1A7 WILD-TYPE 178 130 71
'UGT1A7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.766 (Fisher's exact test), Q value = 1

Table S10474.  Gene #976: 'UGT1A7 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
UGT1A7 MUTATED 2 2 2 2
UGT1A7 WILD-TYPE 110 94 90 184
'UGT1A7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0866 (Fisher's exact test), Q value = 0.32

Table S10475.  Gene #976: 'UGT1A7 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
UGT1A7 MUTATED 2 2 2 0 0 0 2
UGT1A7 WILD-TYPE 58 48 47 40 63 125 97
'UGT1A7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.864 (Fisher's exact test), Q value = 1

Table S10476.  Gene #976: 'UGT1A7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
UGT1A7 MUTATED 3 1 1 2
UGT1A7 WILD-TYPE 127 77 67 194
'UGT1A7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.359 (Fisher's exact test), Q value = 0.69

Table S10477.  Gene #976: 'UGT1A7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
UGT1A7 MUTATED 0 1 2 0 1 1 1 0 1
UGT1A7 WILD-TYPE 40 61 26 80 68 47 42 28 73
'UST MUTATION STATUS' versus 'CN_CNMF'

P value = 0.511 (Fisher's exact test), Q value = 0.83

Table S10478.  Gene #977: 'UST MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
UST MUTATED 4 5 1 1
UST WILD-TYPE 174 178 100 19
'UST MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S10479.  Gene #977: 'UST MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
UST MUTATED 3 3 4
UST WILD-TYPE 84 77 96
'UST MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.169 (Fisher's exact test), Q value = 0.46

Table S10480.  Gene #977: 'UST MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
UST MUTATED 2 2 7
UST WILD-TYPE 87 158 131
'UST MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.509 (Fisher's exact test), Q value = 0.83

Table S10481.  Gene #977: 'UST MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
UST MUTATED 7 2 2
UST WILD-TYPE 175 131 70
'UST MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0515 (Fisher's exact test), Q value = 0.24

Table S10482.  Gene #977: 'UST MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
UST MUTATED 2 5 3 1
UST WILD-TYPE 110 91 89 185
'UST MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.273 (Fisher's exact test), Q value = 0.6

Table S10483.  Gene #977: 'UST MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
UST MUTATED 1 3 2 1 2 1 1
UST WILD-TYPE 59 47 47 39 61 124 98
'UST MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.298 (Fisher's exact test), Q value = 0.63

Table S10484.  Gene #977: 'UST MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
UST MUTATED 5 2 2 2
UST WILD-TYPE 125 76 66 194
'UST MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.149 (Fisher's exact test), Q value = 0.43

Table S10485.  Gene #977: 'UST MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
UST MUTATED 2 4 0 0 1 0 2 0 2
UST WILD-TYPE 38 58 28 80 68 48 41 28 72
'UST MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.93 (Fisher's exact test), Q value = 1

Table S10486.  Gene #977: 'UST MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
UST MUTATED 1 2 1 1
UST WILD-TYPE 32 29 26 18
'UST MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.265 (Fisher's exact test), Q value = 0.59

Table S10487.  Gene #977: 'UST MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
UST MUTATED 4 1 0 0
UST WILD-TYPE 50 9 24 22
'NDUFAF1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.328 (Fisher's exact test), Q value = 0.66

Table S10488.  Gene #978: 'NDUFAF1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
NDUFAF1 MUTATED 5 1 1 0
NDUFAF1 WILD-TYPE 173 182 100 20
'NDUFAF1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.5 (Fisher's exact test), Q value = 0.83

Table S10489.  Gene #978: 'NDUFAF1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
NDUFAF1 MUTATED 1 2 4
NDUFAF1 WILD-TYPE 86 78 96
'NDUFAF1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.197 (Fisher's exact test), Q value = 0.5

Table S10490.  Gene #978: 'NDUFAF1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
NDUFAF1 MUTATED 3 1 2
NDUFAF1 WILD-TYPE 86 159 136
'NDUFAF1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.76 (Fisher's exact test), Q value = 1

Table S10491.  Gene #978: 'NDUFAF1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
NDUFAF1 MUTATED 4 1 1
NDUFAF1 WILD-TYPE 178 132 71
'NDUFAF1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.044 (Fisher's exact test), Q value = 0.22

Table S10492.  Gene #978: 'NDUFAF1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
NDUFAF1 MUTATED 3 3 1 0
NDUFAF1 WILD-TYPE 109 93 91 186

Figure S2871.  Get High-res Image Gene #978: 'NDUFAF1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'NDUFAF1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0576 (Fisher's exact test), Q value = 0.26

Table S10493.  Gene #978: 'NDUFAF1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
NDUFAF1 MUTATED 2 1 2 1 1 0 0
NDUFAF1 WILD-TYPE 58 49 47 39 62 125 99
'NDUFAF1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.138 (Fisher's exact test), Q value = 0.41

Table S10494.  Gene #978: 'NDUFAF1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
NDUFAF1 MUTATED 4 2 0 1
NDUFAF1 WILD-TYPE 126 76 68 195
'NDUFAF1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.134 (Fisher's exact test), Q value = 0.41

Table S10495.  Gene #978: 'NDUFAF1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
NDUFAF1 MUTATED 3 2 0 1 1 0 0 0 0
NDUFAF1 WILD-TYPE 37 60 28 79 68 48 43 28 74
'ENPP1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.404 (Fisher's exact test), Q value = 0.73

Table S10496.  Gene #979: 'ENPP1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ENPP1 MUTATED 1 0 1 2
ENPP1 WILD-TYPE 45 58 63 41
'ENPP1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.834 (Fisher's exact test), Q value = 1

Table S10497.  Gene #979: 'ENPP1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ENPP1 MUTATED 1 1 2
ENPP1 WILD-TYPE 50 82 75
'ENPP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.288 (Fisher's exact test), Q value = 0.62

Table S10498.  Gene #979: 'ENPP1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ENPP1 MUTATED 9 3 3 0
ENPP1 WILD-TYPE 169 180 98 20
'ENPP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.294 (Fisher's exact test), Q value = 0.62

Table S10499.  Gene #979: 'ENPP1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ENPP1 MUTATED 4 1 6
ENPP1 WILD-TYPE 83 79 94
'ENPP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.364 (Fisher's exact test), Q value = 0.69

Table S10500.  Gene #979: 'ENPP1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ENPP1 MUTATED 1 7 6
ENPP1 WILD-TYPE 88 153 132
'ENPP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.556 (Fisher's exact test), Q value = 0.87

Table S10501.  Gene #979: 'ENPP1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ENPP1 MUTATED 7 6 1
ENPP1 WILD-TYPE 175 127 71
'ENPP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.255 (Fisher's exact test), Q value = 0.58

Table S10502.  Gene #979: 'ENPP1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ENPP1 MUTATED 2 6 3 4
ENPP1 WILD-TYPE 110 90 89 182
'ENPP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0475 (Fisher's exact test), Q value = 0.23

Table S10503.  Gene #979: 'ENPP1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ENPP1 MUTATED 2 3 5 0 2 2 1
ENPP1 WILD-TYPE 58 47 44 40 61 123 98

Figure S2872.  Get High-res Image Gene #979: 'ENPP1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ENPP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.67 (Fisher's exact test), Q value = 0.95

Table S10504.  Gene #979: 'ENPP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ENPP1 MUTATED 6 2 1 5
ENPP1 WILD-TYPE 124 76 67 191
'ENPP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.822 (Fisher's exact test), Q value = 1

Table S10505.  Gene #979: 'ENPP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ENPP1 MUTATED 0 4 1 2 3 1 1 0 2
ENPP1 WILD-TYPE 40 58 27 78 66 47 42 28 72
'ENPP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0611 (Fisher's exact test), Q value = 0.27

Table S10506.  Gene #979: 'ENPP1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
ENPP1 MUTATED 0 0 1 2
ENPP1 WILD-TYPE 33 31 26 17
'ENPP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S10507.  Gene #979: 'ENPP1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
ENPP1 MUTATED 2 0 1 0
ENPP1 WILD-TYPE 52 10 23 22
'CASP4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.624 (Fisher's exact test), Q value = 0.92

Table S10508.  Gene #980: 'CASP4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
CASP4 MUTATED 6 3 1 0
CASP4 WILD-TYPE 172 180 100 20
'CASP4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.819 (Fisher's exact test), Q value = 1

Table S10509.  Gene #980: 'CASP4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
CASP4 MUTATED 2 2 4
CASP4 WILD-TYPE 85 78 96
'CASP4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.172 (Fisher's exact test), Q value = 0.47

Table S10510.  Gene #980: 'CASP4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
CASP4 MUTATED 0 6 3
CASP4 WILD-TYPE 89 154 135
'CASP4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.821 (Fisher's exact test), Q value = 1

Table S10511.  Gene #980: 'CASP4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
CASP4 MUTATED 4 4 1
CASP4 WILD-TYPE 178 129 71
'CASP4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.485 (Fisher's exact test), Q value = 0.81

Table S10512.  Gene #980: 'CASP4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
CASP4 MUTATED 2 3 3 2
CASP4 WILD-TYPE 110 93 89 184
'CASP4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0464 (Fisher's exact test), Q value = 0.23

Table S10513.  Gene #980: 'CASP4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
CASP4 MUTATED 3 1 3 0 2 1 0
CASP4 WILD-TYPE 57 49 46 40 61 124 99

Figure S2873.  Get High-res Image Gene #980: 'CASP4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CASP4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.306 (Fisher's exact test), Q value = 0.64

Table S10514.  Gene #980: 'CASP4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
CASP4 MUTATED 5 2 1 2
CASP4 WILD-TYPE 125 76 67 194
'CASP4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.68 (Fisher's exact test), Q value = 0.96

Table S10515.  Gene #980: 'CASP4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
CASP4 MUTATED 2 2 0 1 2 0 2 0 1
CASP4 WILD-TYPE 38 60 28 79 67 48 41 28 73
'STK36 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.273 (Fisher's exact test), Q value = 0.6

Table S10516.  Gene #981: 'STK36 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
STK36 MUTATED 2 0 1 0
STK36 WILD-TYPE 44 58 63 43
'STK36 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.255 (Fisher's exact test), Q value = 0.58

Table S10517.  Gene #981: 'STK36 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
STK36 MUTATED 2 1 0
STK36 WILD-TYPE 49 82 77
'STK36 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.027 (Fisher's exact test), Q value = 0.17

Table S10518.  Gene #981: 'STK36 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
STK36 MUTATED 10 2 4 2
STK36 WILD-TYPE 168 181 97 18

Figure S2874.  Get High-res Image Gene #981: 'STK36 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'STK36 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.172 (Fisher's exact test), Q value = 0.47

Table S10519.  Gene #981: 'STK36 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
STK36 MUTATED 8 2 5
STK36 WILD-TYPE 79 78 95
'STK36 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0396 (Fisher's exact test), Q value = 0.21

Table S10520.  Gene #981: 'STK36 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
STK36 MUTATED 6 2 8
STK36 WILD-TYPE 83 158 130

Figure S2875.  Get High-res Image Gene #981: 'STK36 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'STK36 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.233 (Fisher's exact test), Q value = 0.55

Table S10521.  Gene #981: 'STK36 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
STK36 MUTATED 11 3 2
STK36 WILD-TYPE 171 130 70
'STK36 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0249 (Fisher's exact test), Q value = 0.16

Table S10522.  Gene #981: 'STK36 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
STK36 MUTATED 2 6 7 3
STK36 WILD-TYPE 110 90 85 183

Figure S2876.  Get High-res Image Gene #981: 'STK36 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'STK36 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.058 (Fisher's exact test), Q value = 0.26

Table S10523.  Gene #981: 'STK36 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
STK36 MUTATED 2 3 4 1 5 1 2
STK36 WILD-TYPE 58 47 45 39 58 124 97
'STK36 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00694 (Fisher's exact test), Q value = 0.077

Table S10524.  Gene #981: 'STK36 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
STK36 MUTATED 10 4 0 3
STK36 WILD-TYPE 120 74 68 193

Figure S2877.  Get High-res Image Gene #981: 'STK36 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'STK36 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.394 (Fisher's exact test), Q value = 0.72

Table S10525.  Gene #981: 'STK36 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
STK36 MUTATED 3 5 1 2 3 0 1 0 2
STK36 WILD-TYPE 37 57 27 78 66 48 42 28 72
'STK36 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.138 (Fisher's exact test), Q value = 0.41

Table S10526.  Gene #981: 'STK36 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
STK36 MUTATED 1 4 0 2
STK36 WILD-TYPE 32 27 27 17
'STK36 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.133 (Fisher's exact test), Q value = 0.41

Table S10527.  Gene #981: 'STK36 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
STK36 MUTATED 6 1 0 0
STK36 WILD-TYPE 48 9 24 22
'KRT19 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.12 (Fisher's exact test), Q value = 0.39

Table S10528.  Gene #982: 'KRT19 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
KRT19 MUTATED 4 0 0 0
KRT19 WILD-TYPE 174 183 101 20
'KRT19 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.683 (Fisher's exact test), Q value = 0.96

Table S10529.  Gene #982: 'KRT19 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
KRT19 MUTATED 0 2 2
KRT19 WILD-TYPE 89 158 136
'KRT19 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.329 (Fisher's exact test), Q value = 0.66

Table S10530.  Gene #982: 'KRT19 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
KRT19 MUTATED 1 3 0
KRT19 WILD-TYPE 181 130 72
'KRT19 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.34 (Fisher's exact test), Q value = 0.67

Table S10531.  Gene #982: 'KRT19 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
KRT19 MUTATED 0 2 0 2
KRT19 WILD-TYPE 112 94 92 184
'KRT19 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0961 (Fisher's exact test), Q value = 0.34

Table S10532.  Gene #982: 'KRT19 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
KRT19 MUTATED 0 0 2 0 0 0 2
KRT19 WILD-TYPE 60 50 47 40 63 125 97
'KRT19 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.744 (Fisher's exact test), Q value = 1

Table S10533.  Gene #982: 'KRT19 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
KRT19 MUTATED 2 0 0 2
KRT19 WILD-TYPE 128 78 68 194
'KRT19 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0755 (Fisher's exact test), Q value = 0.3

Table S10534.  Gene #982: 'KRT19 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
KRT19 MUTATED 0 0 1 0 2 0 0 1 0
KRT19 WILD-TYPE 40 62 27 80 67 48 43 27 74
'KIF16B MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00029 (Fisher's exact test), Q value = 0.011

Table S10535.  Gene #983: 'KIF16B MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
KIF16B MUTATED 6 0 0 4
KIF16B WILD-TYPE 40 58 64 39

Figure S2878.  Get High-res Image Gene #983: 'KIF16B MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'KIF16B MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00016 (Fisher's exact test), Q value = 0.0072

Table S10536.  Gene #983: 'KIF16B MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
KIF16B MUTATED 8 0 2
KIF16B WILD-TYPE 43 83 75

Figure S2879.  Get High-res Image Gene #983: 'KIF16B MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'KIF16B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00034 (Fisher's exact test), Q value = 0.012

Table S10537.  Gene #983: 'KIF16B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
KIF16B MUTATED 21 3 4 2
KIF16B WILD-TYPE 157 180 97 18

Figure S2880.  Get High-res Image Gene #983: 'KIF16B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'KIF16B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.703 (Fisher's exact test), Q value = 0.97

Table S10538.  Gene #983: 'KIF16B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
KIF16B MUTATED 5 6 9
KIF16B WILD-TYPE 82 74 91
'KIF16B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S10539.  Gene #983: 'KIF16B MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
KIF16B MUTATED 5 10 9
KIF16B WILD-TYPE 84 150 129
'KIF16B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.119 (Fisher's exact test), Q value = 0.38

Table S10540.  Gene #983: 'KIF16B MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
KIF16B MUTATED 12 11 1
KIF16B WILD-TYPE 170 122 71
'KIF16B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.818 (Fisher's exact test), Q value = 1

Table S10541.  Gene #983: 'KIF16B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
KIF16B MUTATED 6 8 6 11
KIF16B WILD-TYPE 106 88 86 175
'KIF16B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00039 (Fisher's exact test), Q value = 0.013

Table S10542.  Gene #983: 'KIF16B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
KIF16B MUTATED 4 4 7 1 4 0 11
KIF16B WILD-TYPE 56 46 42 39 59 125 88

Figure S2881.  Get High-res Image Gene #983: 'KIF16B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'KIF16B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.124 (Fisher's exact test), Q value = 0.39

Table S10543.  Gene #983: 'KIF16B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
KIF16B MUTATED 13 2 2 12
KIF16B WILD-TYPE 117 76 66 184
'KIF16B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0119 (Fisher's exact test), Q value = 0.11

Table S10544.  Gene #983: 'KIF16B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
KIF16B MUTATED 4 3 2 3 12 2 1 1 1
KIF16B WILD-TYPE 36 59 26 77 57 46 42 27 73

Figure S2882.  Get High-res Image Gene #983: 'KIF16B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'KIF16B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0741 (Fisher's exact test), Q value = 0.29

Table S10545.  Gene #983: 'KIF16B MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
KIF16B MUTATED 1 0 2 3
KIF16B WILD-TYPE 32 31 25 16
'KIF16B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.392 (Fisher's exact test), Q value = 0.72

Table S10546.  Gene #983: 'KIF16B MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
KIF16B MUTATED 3 1 2 0
KIF16B WILD-TYPE 51 9 22 22
'ZHX1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.412 (Fisher's exact test), Q value = 0.74

Table S10547.  Gene #984: 'ZHX1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ZHX1 MUTATED 7 3 1 0
ZHX1 WILD-TYPE 171 180 100 20
'ZHX1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.299 (Fisher's exact test), Q value = 0.63

Table S10548.  Gene #984: 'ZHX1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ZHX1 MUTATED 5 1 3
ZHX1 WILD-TYPE 82 79 97
'ZHX1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.186 (Fisher's exact test), Q value = 0.49

Table S10549.  Gene #984: 'ZHX1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ZHX1 MUTATED 0 6 4
ZHX1 WILD-TYPE 89 154 134
'ZHX1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.639 (Fisher's exact test), Q value = 0.93

Table S10550.  Gene #984: 'ZHX1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ZHX1 MUTATED 4 5 1
ZHX1 WILD-TYPE 178 128 71
'ZHX1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.526 (Fisher's exact test), Q value = 0.85

Table S10551.  Gene #984: 'ZHX1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ZHX1 MUTATED 4 1 3 3
ZHX1 WILD-TYPE 108 95 89 183
'ZHX1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0858 (Fisher's exact test), Q value = 0.32

Table S10552.  Gene #984: 'ZHX1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ZHX1 MUTATED 3 1 2 0 3 0 2
ZHX1 WILD-TYPE 57 49 47 40 60 125 97
'ZHX1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.56 (Fisher's exact test), Q value = 0.87

Table S10553.  Gene #984: 'ZHX1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ZHX1 MUTATED 3 2 3 3
ZHX1 WILD-TYPE 127 76 65 193
'ZHX1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.345 (Fisher's exact test), Q value = 0.67

Table S10554.  Gene #984: 'ZHX1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ZHX1 MUTATED 0 3 1 0 2 2 2 0 1
ZHX1 WILD-TYPE 40 59 27 80 67 46 41 28 73
'ZHX1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.358 (Fisher's exact test), Q value = 0.69

Table S10555.  Gene #984: 'ZHX1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
ZHX1 MUTATED 1 1 0 2
ZHX1 WILD-TYPE 32 30 27 17
'ZHX1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S10556.  Gene #984: 'ZHX1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
ZHX1 MUTATED 2 0 1 1
ZHX1 WILD-TYPE 52 10 23 21
'ZNF658 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.111 (Fisher's exact test), Q value = 0.37

Table S10557.  Gene #985: 'ZNF658 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ZNF658 MUTATED 3 2 0 3
ZNF658 WILD-TYPE 43 56 64 40
'ZNF658 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.595 (Fisher's exact test), Q value = 0.9

Table S10558.  Gene #985: 'ZNF658 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ZNF658 MUTATED 3 3 2
ZNF658 WILD-TYPE 48 80 75
'ZNF658 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.543 (Fisher's exact test), Q value = 0.86

Table S10559.  Gene #985: 'ZNF658 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ZNF658 MUTATED 8 4 2 0
ZNF658 WILD-TYPE 170 179 99 20
'ZNF658 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.569 (Fisher's exact test), Q value = 0.88

Table S10560.  Gene #985: 'ZNF658 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ZNF658 MUTATED 1 3 3
ZNF658 WILD-TYPE 86 77 97
'ZNF658 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.911 (Fisher's exact test), Q value = 1

Table S10561.  Gene #985: 'ZNF658 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ZNF658 MUTATED 2 3 4
ZNF658 WILD-TYPE 87 157 134
'ZNF658 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S10562.  Gene #985: 'ZNF658 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ZNF658 MUTATED 5 3 1
ZNF658 WILD-TYPE 177 130 71
'ZNF658 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.896 (Fisher's exact test), Q value = 1

Table S10563.  Gene #985: 'ZNF658 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ZNF658 MUTATED 3 2 2 7
ZNF658 WILD-TYPE 109 94 90 179
'ZNF658 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.476 (Fisher's exact test), Q value = 0.8

Table S10564.  Gene #985: 'ZNF658 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ZNF658 MUTATED 3 2 2 0 0 3 4
ZNF658 WILD-TYPE 57 48 47 40 63 122 95
'ZNF658 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.933 (Fisher's exact test), Q value = 1

Table S10565.  Gene #985: 'ZNF658 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ZNF658 MUTATED 4 1 2 6
ZNF658 WILD-TYPE 126 77 66 190
'ZNF658 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.508 (Fisher's exact test), Q value = 0.83

Table S10566.  Gene #985: 'ZNF658 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ZNF658 MUTATED 1 1 2 3 4 0 1 0 1
ZNF658 WILD-TYPE 39 61 26 77 65 48 42 28 73
'ZNF658 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.783 (Fisher's exact test), Q value = 1

Table S10567.  Gene #985: 'ZNF658 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
ZNF658 MUTATED 1 0 1 1
ZNF658 WILD-TYPE 32 31 26 18
'ZNF658 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.449 (Fisher's exact test), Q value = 0.78

Table S10568.  Gene #985: 'ZNF658 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
ZNF658 MUTATED 1 0 2 0
ZNF658 WILD-TYPE 53 10 22 22
'GPR141 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.018 (Fisher's exact test), Q value = 0.13

Table S10569.  Gene #986: 'GPR141 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
GPR141 MUTATED 3 0 0 0
GPR141 WILD-TYPE 43 58 64 43

Figure S2883.  Get High-res Image Gene #986: 'GPR141 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'GPR141 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0131 (Fisher's exact test), Q value = 0.11

Table S10570.  Gene #986: 'GPR141 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
GPR141 MUTATED 3 0 0
GPR141 WILD-TYPE 48 83 77

Figure S2884.  Get High-res Image Gene #986: 'GPR141 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'GPR141 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.166 (Fisher's exact test), Q value = 0.46

Table S10571.  Gene #986: 'GPR141 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
GPR141 MUTATED 8 2 1 0
GPR141 WILD-TYPE 170 181 100 20
'GPR141 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.603 (Fisher's exact test), Q value = 0.91

Table S10572.  Gene #986: 'GPR141 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
GPR141 MUTATED 3 1 4
GPR141 WILD-TYPE 84 79 96
'GPR141 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0469 (Fisher's exact test), Q value = 0.23

Table S10573.  Gene #986: 'GPR141 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
GPR141 MUTATED 2 1 7
GPR141 WILD-TYPE 87 159 131

Figure S2885.  Get High-res Image Gene #986: 'GPR141 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'GPR141 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.186 (Fisher's exact test), Q value = 0.49

Table S10574.  Gene #986: 'GPR141 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
GPR141 MUTATED 6 1 3
GPR141 WILD-TYPE 176 132 69
'GPR141 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.335 (Fisher's exact test), Q value = 0.66

Table S10575.  Gene #986: 'GPR141 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
GPR141 MUTATED 1 4 3 3
GPR141 WILD-TYPE 111 92 89 183
'GPR141 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0179 (Fisher's exact test), Q value = 0.13

Table S10576.  Gene #986: 'GPR141 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
GPR141 MUTATED 1 2 4 1 0 0 3
GPR141 WILD-TYPE 59 48 45 39 63 125 96

Figure S2886.  Get High-res Image Gene #986: 'GPR141 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'GPR141 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.277 (Fisher's exact test), Q value = 0.6

Table S10577.  Gene #986: 'GPR141 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
GPR141 MUTATED 2 4 2 3
GPR141 WILD-TYPE 128 74 66 193
'GPR141 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.057 (Fisher's exact test), Q value = 0.26

Table S10578.  Gene #986: 'GPR141 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
GPR141 MUTATED 1 4 0 0 3 0 2 1 0
GPR141 WILD-TYPE 39 58 28 80 66 48 41 27 74
'GPR141 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0605 (Fisher's exact test), Q value = 0.27

Table S10579.  Gene #986: 'GPR141 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
GPR141 MUTATED 0 0 1 2
GPR141 WILD-TYPE 33 31 26 17
'GPR141 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S10580.  Gene #986: 'GPR141 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
GPR141 MUTATED 2 0 1 0
GPR141 WILD-TYPE 52 10 23 22
'ZNF585A MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00707 (Fisher's exact test), Q value = 0.077

Table S10581.  Gene #987: 'ZNF585A MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ZNF585A MUTATED 4 0 1 5
ZNF585A WILD-TYPE 42 58 63 38

Figure S2887.  Get High-res Image Gene #987: 'ZNF585A MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'ZNF585A MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.187 (Fisher's exact test), Q value = 0.49

Table S10582.  Gene #987: 'ZNF585A MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ZNF585A MUTATED 5 2 3
ZNF585A WILD-TYPE 46 81 74
'ZNF585A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00067 (Fisher's exact test), Q value = 0.019

Table S10583.  Gene #987: 'ZNF585A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ZNF585A MUTATED 16 2 1 0
ZNF585A WILD-TYPE 162 181 100 20

Figure S2888.  Get High-res Image Gene #987: 'ZNF585A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ZNF585A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.437 (Fisher's exact test), Q value = 0.76

Table S10584.  Gene #987: 'ZNF585A MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ZNF585A MUTATED 3 1 5
ZNF585A WILD-TYPE 84 79 95
'ZNF585A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.937 (Fisher's exact test), Q value = 1

Table S10585.  Gene #987: 'ZNF585A MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ZNF585A MUTATED 3 6 4
ZNF585A WILD-TYPE 86 154 134
'ZNF585A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.933 (Fisher's exact test), Q value = 1

Table S10586.  Gene #987: 'ZNF585A MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ZNF585A MUTATED 7 4 2
ZNF585A WILD-TYPE 175 129 70
'ZNF585A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.224 (Fisher's exact test), Q value = 0.54

Table S10587.  Gene #987: 'ZNF585A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ZNF585A MUTATED 1 4 4 10
ZNF585A WILD-TYPE 111 92 88 176
'ZNF585A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0285 (Fisher's exact test), Q value = 0.17

Table S10588.  Gene #987: 'ZNF585A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ZNF585A MUTATED 1 3 3 1 1 1 9
ZNF585A WILD-TYPE 59 47 46 39 62 124 90

Figure S2889.  Get High-res Image Gene #987: 'ZNF585A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ZNF585A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.624 (Fisher's exact test), Q value = 0.92

Table S10589.  Gene #987: 'ZNF585A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ZNF585A MUTATED 4 3 1 10
ZNF585A WILD-TYPE 126 75 67 186
'ZNF585A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.139 (Fisher's exact test), Q value = 0.42

Table S10590.  Gene #987: 'ZNF585A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ZNF585A MUTATED 1 3 3 3 6 0 1 0 1
ZNF585A WILD-TYPE 39 59 25 77 63 48 42 28 73
'DIAPH2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0963 (Fisher's exact test), Q value = 0.34

Table S10591.  Gene #988: 'DIAPH2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
DIAPH2 MUTATED 3 0 3 4
DIAPH2 WILD-TYPE 43 58 61 39
'DIAPH2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.319 (Fisher's exact test), Q value = 0.65

Table S10592.  Gene #988: 'DIAPH2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
DIAPH2 MUTATED 4 2 4
DIAPH2 WILD-TYPE 47 81 73
'DIAPH2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.304 (Fisher's exact test), Q value = 0.63

Table S10593.  Gene #988: 'DIAPH2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
DIAPH2 MUTATED 13 6 5 0
DIAPH2 WILD-TYPE 165 177 96 20
'DIAPH2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.133 (Fisher's exact test), Q value = 0.41

Table S10594.  Gene #988: 'DIAPH2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
DIAPH2 MUTATED 3 2 9
DIAPH2 WILD-TYPE 84 78 91
'DIAPH2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.83 (Fisher's exact test), Q value = 1

Table S10595.  Gene #988: 'DIAPH2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
DIAPH2 MUTATED 4 7 8
DIAPH2 WILD-TYPE 85 153 130
'DIAPH2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.193 (Fisher's exact test), Q value = 0.5

Table S10596.  Gene #988: 'DIAPH2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
DIAPH2 MUTATED 13 4 2
DIAPH2 WILD-TYPE 169 129 70
'DIAPH2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.469 (Fisher's exact test), Q value = 0.8

Table S10597.  Gene #988: 'DIAPH2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
DIAPH2 MUTATED 4 3 7 11
DIAPH2 WILD-TYPE 108 93 85 175
'DIAPH2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0387 (Fisher's exact test), Q value = 0.21

Table S10598.  Gene #988: 'DIAPH2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
DIAPH2 MUTATED 3 3 2 1 6 1 9
DIAPH2 WILD-TYPE 57 47 47 39 57 124 90

Figure S2890.  Get High-res Image Gene #988: 'DIAPH2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'DIAPH2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.365 (Fisher's exact test), Q value = 0.69

Table S10599.  Gene #988: 'DIAPH2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
DIAPH2 MUTATED 5 7 2 10
DIAPH2 WILD-TYPE 125 71 66 186
'DIAPH2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.21 (Fisher's exact test), Q value = 0.52

Table S10600.  Gene #988: 'DIAPH2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
DIAPH2 MUTATED 2 5 1 5 6 3 2 0 0
DIAPH2 WILD-TYPE 38 57 27 75 63 45 41 28 74
'DIAPH2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.92 (Fisher's exact test), Q value = 1

Table S10601.  Gene #988: 'DIAPH2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
DIAPH2 MUTATED 2 2 2 2
DIAPH2 WILD-TYPE 31 29 25 17
'DIAPH2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.47 (Fisher's exact test), Q value = 0.8

Table S10602.  Gene #988: 'DIAPH2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
DIAPH2 MUTATED 4 2 1 1
DIAPH2 WILD-TYPE 50 8 23 21
'ANKRD10 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.127 (Fisher's exact test), Q value = 0.4

Table S10603.  Gene #989: 'ANKRD10 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ANKRD10 MUTATED 7 1 1 0
ANKRD10 WILD-TYPE 171 182 100 20
'ANKRD10 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.713 (Fisher's exact test), Q value = 0.98

Table S10604.  Gene #989: 'ANKRD10 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ANKRD10 MUTATED 3 1 3
ANKRD10 WILD-TYPE 84 79 97
'ANKRD10 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.903 (Fisher's exact test), Q value = 1

Table S10605.  Gene #989: 'ANKRD10 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ANKRD10 MUTATED 1 4 3
ANKRD10 WILD-TYPE 88 156 135
'ANKRD10 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.158 (Fisher's exact test), Q value = 0.45

Table S10606.  Gene #989: 'ANKRD10 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ANKRD10 MUTATED 3 5 0
ANKRD10 WILD-TYPE 179 128 72
'ANKRD10 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00563 (Fisher's exact test), Q value = 0.068

Table S10607.  Gene #989: 'ANKRD10 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ANKRD10 MUTATED 0 3 5 1
ANKRD10 WILD-TYPE 112 93 87 185

Figure S2891.  Get High-res Image Gene #989: 'ANKRD10 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'ANKRD10 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0558 (Fisher's exact test), Q value = 0.26

Table S10608.  Gene #989: 'ANKRD10 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ANKRD10 MUTATED 0 1 3 0 2 0 3
ANKRD10 WILD-TYPE 60 49 46 40 61 125 96
'ANKRD10 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.047 (Fisher's exact test), Q value = 0.23

Table S10609.  Gene #989: 'ANKRD10 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ANKRD10 MUTATED 0 3 0 6
ANKRD10 WILD-TYPE 130 75 68 190

Figure S2892.  Get High-res Image Gene #989: 'ANKRD10 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'ANKRD10 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0366 (Fisher's exact test), Q value = 0.2

Table S10610.  Gene #989: 'ANKRD10 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ANKRD10 MUTATED 0 3 0 0 5 0 0 0 1
ANKRD10 WILD-TYPE 40 59 28 80 64 48 43 28 73

Figure S2893.  Get High-res Image Gene #989: 'ANKRD10 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'ASPG MUTATION STATUS' versus 'CN_CNMF'

P value = 0.105 (Fisher's exact test), Q value = 0.36

Table S10611.  Gene #990: 'ASPG MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ASPG MUTATED 6 1 0 0
ASPG WILD-TYPE 172 182 101 20
'ASPG MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.139 (Fisher's exact test), Q value = 0.42

Table S10612.  Gene #990: 'ASPG MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ASPG MUTATED 4 0 2
ASPG WILD-TYPE 83 80 98
'ASPG MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.138 (Fisher's exact test), Q value = 0.41

Table S10613.  Gene #990: 'ASPG MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ASPG MUTATED 0 1 4
ASPG WILD-TYPE 89 159 134
'ASPG MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.505 (Fisher's exact test), Q value = 0.83

Table S10614.  Gene #990: 'ASPG MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ASPG MUTATED 4 1 0
ASPG WILD-TYPE 178 132 72
'ASPG MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.23 (Fisher's exact test), Q value = 0.55

Table S10615.  Gene #990: 'ASPG MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ASPG MUTATED 1 3 2 1
ASPG WILD-TYPE 111 93 90 185
'ASPG MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0077 (Fisher's exact test), Q value = 0.082

Table S10616.  Gene #990: 'ASPG MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ASPG MUTATED 1 1 4 0 0 0 1
ASPG WILD-TYPE 59 49 45 40 63 125 98

Figure S2894.  Get High-res Image Gene #990: 'ASPG MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ASPG MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.48 (Fisher's exact test), Q value = 0.81

Table S10617.  Gene #990: 'ASPG MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ASPG MUTATED 3 2 0 2
ASPG WILD-TYPE 127 76 68 194
'ASPG MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.31 (Fisher's exact test), Q value = 0.64

Table S10618.  Gene #990: 'ASPG MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ASPG MUTATED 1 3 0 0 1 0 0 1 1
ASPG WILD-TYPE 39 59 28 80 68 48 43 27 73
'CDK14 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S10619.  Gene #991: 'CDK14 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
CDK14 MUTATED 1 2 2 1
CDK14 WILD-TYPE 45 56 62 42
'CDK14 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.655 (Fisher's exact test), Q value = 0.94

Table S10620.  Gene #991: 'CDK14 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
CDK14 MUTATED 2 3 1
CDK14 WILD-TYPE 49 80 76
'CDK14 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.891 (Fisher's exact test), Q value = 1

Table S10621.  Gene #991: 'CDK14 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
CDK14 MUTATED 6 7 3 1
CDK14 WILD-TYPE 172 176 98 19
'CDK14 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S10622.  Gene #991: 'CDK14 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
CDK14 MUTATED 4 3 4
CDK14 WILD-TYPE 83 77 96
'CDK14 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.297 (Fisher's exact test), Q value = 0.63

Table S10623.  Gene #991: 'CDK14 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
CDK14 MUTATED 1 5 7
CDK14 WILD-TYPE 88 155 131
'CDK14 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.317 (Fisher's exact test), Q value = 0.65

Table S10624.  Gene #991: 'CDK14 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
CDK14 MUTATED 9 3 1
CDK14 WILD-TYPE 173 130 71
'CDK14 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0724 (Fisher's exact test), Q value = 0.29

Table S10625.  Gene #991: 'CDK14 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
CDK14 MUTATED 2 8 2 5
CDK14 WILD-TYPE 110 88 90 181
'CDK14 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.285 (Fisher's exact test), Q value = 0.61

Table S10626.  Gene #991: 'CDK14 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
CDK14 MUTATED 2 1 5 2 1 4 2
CDK14 WILD-TYPE 58 49 44 38 62 121 97
'CDK14 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.279 (Fisher's exact test), Q value = 0.61

Table S10627.  Gene #991: 'CDK14 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
CDK14 MUTATED 8 2 2 4
CDK14 WILD-TYPE 122 76 66 192
'CDK14 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00885 (Fisher's exact test), Q value = 0.088

Table S10628.  Gene #991: 'CDK14 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
CDK14 MUTATED 5 2 2 0 4 0 0 0 3
CDK14 WILD-TYPE 35 60 26 80 65 48 43 28 71

Figure S2895.  Get High-res Image Gene #991: 'CDK14 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'CDK14 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0645 (Fisher's exact test), Q value = 0.28

Table S10629.  Gene #991: 'CDK14 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
CDK14 MUTATED 0 2 0 2
CDK14 WILD-TYPE 33 29 27 17
'CDK14 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.219 (Fisher's exact test), Q value = 0.53

Table S10630.  Gene #991: 'CDK14 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
CDK14 MUTATED 3 1 0 0
CDK14 WILD-TYPE 51 9 24 22
'OR8A1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.272 (Fisher's exact test), Q value = 0.6

Table S10631.  Gene #992: 'OR8A1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
OR8A1 MUTATED 2 2 0 1
OR8A1 WILD-TYPE 176 181 101 19
'OR8A1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.527 (Fisher's exact test), Q value = 0.85

Table S10632.  Gene #992: 'OR8A1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
OR8A1 MUTATED 3 1 1
OR8A1 WILD-TYPE 84 79 99
'OR8A1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.359 (Fisher's exact test), Q value = 0.69

Table S10633.  Gene #992: 'OR8A1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
OR8A1 MUTATED 0 1 3
OR8A1 WILD-TYPE 89 159 135
'OR8A1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.672 (Fisher's exact test), Q value = 0.95

Table S10634.  Gene #992: 'OR8A1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
OR8A1 MUTATED 3 1 0
OR8A1 WILD-TYPE 179 132 72
'OR8A1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0579 (Fisher's exact test), Q value = 0.26

Table S10635.  Gene #992: 'OR8A1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
OR8A1 MUTATED 1 3 1 0
OR8A1 WILD-TYPE 111 93 91 186
'OR8A1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00322 (Fisher's exact test), Q value = 0.051

Table S10636.  Gene #992: 'OR8A1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
OR8A1 MUTATED 0 0 1 3 1 0 0
OR8A1 WILD-TYPE 60 50 48 37 62 125 99

Figure S2896.  Get High-res Image Gene #992: 'OR8A1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'OR8A1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.104 (Fisher's exact test), Q value = 0.36

Table S10637.  Gene #992: 'OR8A1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
OR8A1 MUTATED 3 1 1 0
OR8A1 WILD-TYPE 127 77 67 196
'OR8A1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.638 (Fisher's exact test), Q value = 0.93

Table S10638.  Gene #992: 'OR8A1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
OR8A1 MUTATED 1 1 0 0 1 1 1 0 0
OR8A1 WILD-TYPE 39 61 28 80 68 47 42 28 74
'SPINT4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.536 (Fisher's exact test), Q value = 0.86

Table S10639.  Gene #993: 'SPINT4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
SPINT4 MUTATED 3 1 0 0
SPINT4 WILD-TYPE 175 182 101 20
'SPINT4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S10640.  Gene #993: 'SPINT4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
SPINT4 MUTATED 1 1 2
SPINT4 WILD-TYPE 86 79 98
'SPINT4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.555 (Fisher's exact test), Q value = 0.87

Table S10641.  Gene #993: 'SPINT4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
SPINT4 MUTATED 0 3 1
SPINT4 WILD-TYPE 89 157 137
'SPINT4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.829 (Fisher's exact test), Q value = 1

Table S10642.  Gene #993: 'SPINT4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
SPINT4 MUTATED 2 2 0
SPINT4 WILD-TYPE 180 131 72
'SPINT4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.161 (Fisher's exact test), Q value = 0.45

Table S10643.  Gene #993: 'SPINT4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
SPINT4 MUTATED 1 2 1 0
SPINT4 WILD-TYPE 111 94 91 186
'SPINT4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0412 (Fisher's exact test), Q value = 0.21

Table S10644.  Gene #993: 'SPINT4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
SPINT4 MUTATED 1 1 2 0 0 0 0
SPINT4 WILD-TYPE 59 49 47 40 63 125 99

Figure S2897.  Get High-res Image Gene #993: 'SPINT4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'SPINT4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.188 (Fisher's exact test), Q value = 0.49

Table S10645.  Gene #993: 'SPINT4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
SPINT4 MUTATED 2 1 1 0
SPINT4 WILD-TYPE 128 77 67 196
'SPINT4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.513 (Fisher's exact test), Q value = 0.83

Table S10646.  Gene #993: 'SPINT4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
SPINT4 MUTATED 0 2 0 1 0 0 1 0 0
SPINT4 WILD-TYPE 40 60 28 79 69 48 42 28 74
'E2F5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.108 (Fisher's exact test), Q value = 0.36

Table S10647.  Gene #994: 'E2F5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
E2F5 MUTATED 6 1 0 0
E2F5 WILD-TYPE 172 182 101 20
'E2F5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0741 (Fisher's exact test), Q value = 0.29

Table S10648.  Gene #994: 'E2F5 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
E2F5 MUTATED 4 0 1
E2F5 WILD-TYPE 83 80 99
'E2F5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0782 (Fisher's exact test), Q value = 0.3

Table S10649.  Gene #994: 'E2F5 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
E2F5 MUTATED 0 1 5
E2F5 WILD-TYPE 89 159 133
'E2F5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.412 (Fisher's exact test), Q value = 0.74

Table S10650.  Gene #994: 'E2F5 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
E2F5 MUTATED 3 1 2
E2F5 WILD-TYPE 179 132 70
'E2F5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.494 (Fisher's exact test), Q value = 0.82

Table S10651.  Gene #994: 'E2F5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
E2F5 MUTATED 2 2 2 1
E2F5 WILD-TYPE 110 94 90 185
'E2F5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.766 (Fisher's exact test), Q value = 1

Table S10652.  Gene #994: 'E2F5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
E2F5 MUTATED 2 1 1 0 1 1 1
E2F5 WILD-TYPE 58 49 48 40 62 124 98
'E2F5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.725 (Fisher's exact test), Q value = 0.99

Table S10653.  Gene #994: 'E2F5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
E2F5 MUTATED 2 2 1 2
E2F5 WILD-TYPE 128 76 67 194
'E2F5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.185 (Fisher's exact test), Q value = 0.49

Table S10654.  Gene #994: 'E2F5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
E2F5 MUTATED 0 4 0 0 1 1 0 0 1
E2F5 WILD-TYPE 40 58 28 80 68 47 43 28 73
'STRADB MUTATION STATUS' versus 'CN_CNMF'

P value = 0.056 (Fisher's exact test), Q value = 0.26

Table S10655.  Gene #995: 'STRADB MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
STRADB MUTATED 4 0 2 1
STRADB WILD-TYPE 174 183 99 19
'STRADB MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.254 (Fisher's exact test), Q value = 0.58

Table S10656.  Gene #995: 'STRADB MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
STRADB MUTATED 2 0 4
STRADB WILD-TYPE 85 80 96
'STRADB MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.207 (Fisher's exact test), Q value = 0.51

Table S10657.  Gene #995: 'STRADB MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
STRADB MUTATED 3 1 1
STRADB WILD-TYPE 86 159 137
'STRADB MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.273 (Fisher's exact test), Q value = 0.6

Table S10658.  Gene #995: 'STRADB MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
STRADB MUTATED 1 2 2
STRADB WILD-TYPE 181 131 70
'STRADB MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.761 (Fisher's exact test), Q value = 1

Table S10659.  Gene #995: 'STRADB MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
STRADB MUTATED 1 2 2 2
STRADB WILD-TYPE 111 94 90 184
'STRADB MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0307 (Fisher's exact test), Q value = 0.18

Table S10660.  Gene #995: 'STRADB MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
STRADB MUTATED 2 0 3 1 0 1 0
STRADB WILD-TYPE 58 50 46 39 63 124 99

Figure S2898.  Get High-res Image Gene #995: 'STRADB MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'STRADB MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.826 (Fisher's exact test), Q value = 1

Table S10661.  Gene #995: 'STRADB MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
STRADB MUTATED 3 1 0 3
STRADB WILD-TYPE 127 77 68 193
'STRADB MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.567 (Fisher's exact test), Q value = 0.87

Table S10662.  Gene #995: 'STRADB MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
STRADB MUTATED 2 0 0 2 2 0 0 0 1
STRADB WILD-TYPE 38 62 28 78 67 48 43 28 73
'RANBP17 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.155 (Fisher's exact test), Q value = 0.44

Table S10663.  Gene #996: 'RANBP17 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
RANBP17 MUTATED 0 1 0 2
RANBP17 WILD-TYPE 46 57 64 41
'RANBP17 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S10664.  Gene #996: 'RANBP17 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
RANBP17 MUTATED 1 1 1
RANBP17 WILD-TYPE 50 82 76
'RANBP17 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0165 (Fisher's exact test), Q value = 0.13

Table S10665.  Gene #996: 'RANBP17 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
RANBP17 MUTATED 10 1 1 0
RANBP17 WILD-TYPE 168 182 100 20

Figure S2899.  Get High-res Image Gene #996: 'RANBP17 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'RANBP17 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.479 (Fisher's exact test), Q value = 0.81

Table S10666.  Gene #996: 'RANBP17 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
RANBP17 MUTATED 4 1 4
RANBP17 WILD-TYPE 83 79 96
'RANBP17 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.287 (Fisher's exact test), Q value = 0.62

Table S10667.  Gene #996: 'RANBP17 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
RANBP17 MUTATED 2 3 7
RANBP17 WILD-TYPE 87 157 131
'RANBP17 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.365 (Fisher's exact test), Q value = 0.69

Table S10668.  Gene #996: 'RANBP17 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
RANBP17 MUTATED 8 2 2
RANBP17 WILD-TYPE 174 131 70
'RANBP17 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.482 (Fisher's exact test), Q value = 0.81

Table S10669.  Gene #996: 'RANBP17 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
RANBP17 MUTATED 2 4 3 3
RANBP17 WILD-TYPE 110 92 89 183
'RANBP17 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00716 (Fisher's exact test), Q value = 0.078

Table S10670.  Gene #996: 'RANBP17 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
RANBP17 MUTATED 1 0 4 3 2 0 2
RANBP17 WILD-TYPE 59 50 45 37 61 125 97

Figure S2900.  Get High-res Image Gene #996: 'RANBP17 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'RANBP17 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.343 (Fisher's exact test), Q value = 0.67

Table S10671.  Gene #996: 'RANBP17 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
RANBP17 MUTATED 3 4 1 3
RANBP17 WILD-TYPE 127 74 67 193
'RANBP17 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.437 (Fisher's exact test), Q value = 0.76

Table S10672.  Gene #996: 'RANBP17 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
RANBP17 MUTATED 2 3 0 1 3 1 1 0 0
RANBP17 WILD-TYPE 38 59 28 79 66 47 42 28 74
'RANBP17 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0585 (Fisher's exact test), Q value = 0.26

Table S10673.  Gene #996: 'RANBP17 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
RANBP17 MUTATED 0 1 1 3
RANBP17 WILD-TYPE 33 30 26 16
'RANBP17 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.893 (Fisher's exact test), Q value = 1

Table S10674.  Gene #996: 'RANBP17 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
RANBP17 MUTATED 2 0 2 1
RANBP17 WILD-TYPE 52 10 22 21
'AHCTF1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0358 (Fisher's exact test), Q value = 0.2

Table S10675.  Gene #997: 'AHCTF1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
AHCTF1 MUTATED 3 0 1 4
AHCTF1 WILD-TYPE 43 58 63 39

Figure S2901.  Get High-res Image Gene #997: 'AHCTF1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'AHCTF1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.133 (Fisher's exact test), Q value = 0.41

Table S10676.  Gene #997: 'AHCTF1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
AHCTF1 MUTATED 4 1 3
AHCTF1 WILD-TYPE 47 82 74
'AHCTF1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.104 (Fisher's exact test), Q value = 0.36

Table S10677.  Gene #997: 'AHCTF1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
AHCTF1 MUTATED 14 5 3 1
AHCTF1 WILD-TYPE 164 178 98 19
'AHCTF1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0732 (Fisher's exact test), Q value = 0.29

Table S10678.  Gene #997: 'AHCTF1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
AHCTF1 MUTATED 5 1 9
AHCTF1 WILD-TYPE 82 79 91
'AHCTF1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.39 (Fisher's exact test), Q value = 0.72

Table S10679.  Gene #997: 'AHCTF1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
AHCTF1 MUTATED 2 8 9
AHCTF1 WILD-TYPE 87 152 129
'AHCTF1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.674 (Fisher's exact test), Q value = 0.96

Table S10680.  Gene #997: 'AHCTF1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
AHCTF1 MUTATED 9 8 2
AHCTF1 WILD-TYPE 173 125 70
'AHCTF1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.251 (Fisher's exact test), Q value = 0.58

Table S10681.  Gene #997: 'AHCTF1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
AHCTF1 MUTATED 3 8 5 7
AHCTF1 WILD-TYPE 109 88 87 179
'AHCTF1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0702 (Fisher's exact test), Q value = 0.29

Table S10682.  Gene #997: 'AHCTF1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
AHCTF1 MUTATED 2 5 4 2 3 1 6
AHCTF1 WILD-TYPE 58 45 45 38 60 124 93
'AHCTF1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.606 (Fisher's exact test), Q value = 0.91

Table S10683.  Gene #997: 'AHCTF1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
AHCTF1 MUTATED 9 3 2 8
AHCTF1 WILD-TYPE 121 75 66 188
'AHCTF1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.265 (Fisher's exact test), Q value = 0.59

Table S10684.  Gene #997: 'AHCTF1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
AHCTF1 MUTATED 1 3 3 2 7 2 2 1 1
AHCTF1 WILD-TYPE 39 59 25 78 62 46 41 27 73
'AHCTF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00746 (Fisher's exact test), Q value = 0.08

Table S10685.  Gene #997: 'AHCTF1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
AHCTF1 MUTATED 1 2 0 5
AHCTF1 WILD-TYPE 32 29 27 14

Figure S2902.  Get High-res Image Gene #997: 'AHCTF1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'AHCTF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.952 (Fisher's exact test), Q value = 1

Table S10686.  Gene #997: 'AHCTF1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
AHCTF1 MUTATED 4 1 2 1
AHCTF1 WILD-TYPE 50 9 22 21
'OR10J1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0743 (Fisher's exact test), Q value = 0.29

Table S10687.  Gene #998: 'OR10J1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
OR10J1 MUTATED 2 0 0 2
OR10J1 WILD-TYPE 44 58 64 41
'OR10J1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0619 (Fisher's exact test), Q value = 0.27

Table S10688.  Gene #998: 'OR10J1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
OR10J1 MUTATED 3 1 0
OR10J1 WILD-TYPE 48 82 77
'OR10J1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.358 (Fisher's exact test), Q value = 0.69

Table S10689.  Gene #998: 'OR10J1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
OR10J1 MUTATED 8 3 2 0
OR10J1 WILD-TYPE 170 180 99 20
'OR10J1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.438 (Fisher's exact test), Q value = 0.76

Table S10690.  Gene #998: 'OR10J1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
OR10J1 MUTATED 3 1 5
OR10J1 WILD-TYPE 84 79 95
'OR10J1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.512 (Fisher's exact test), Q value = 0.83

Table S10691.  Gene #998: 'OR10J1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
OR10J1 MUTATED 1 3 5
OR10J1 WILD-TYPE 88 157 133
'OR10J1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.188 (Fisher's exact test), Q value = 0.49

Table S10692.  Gene #998: 'OR10J1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
OR10J1 MUTATED 7 1 1
OR10J1 WILD-TYPE 175 132 71
'OR10J1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.277 (Fisher's exact test), Q value = 0.6

Table S10693.  Gene #998: 'OR10J1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
OR10J1 MUTATED 1 5 3 4
OR10J1 WILD-TYPE 111 91 89 182
'OR10J1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0554 (Fisher's exact test), Q value = 0.26

Table S10694.  Gene #998: 'OR10J1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
OR10J1 MUTATED 1 3 4 1 0 1 3
OR10J1 WILD-TYPE 59 47 45 39 63 124 96
'OR10J1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.387 (Fisher's exact test), Q value = 0.71

Table S10695.  Gene #998: 'OR10J1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
OR10J1 MUTATED 6 2 1 3
OR10J1 WILD-TYPE 124 76 67 193
'OR10J1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.663 (Fisher's exact test), Q value = 0.95

Table S10696.  Gene #998: 'OR10J1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
OR10J1 MUTATED 1 3 2 1 1 1 1 1 1
OR10J1 WILD-TYPE 39 59 26 79 68 47 42 27 73
'OR10J1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0594 (Fisher's exact test), Q value = 0.27

Table S10697.  Gene #998: 'OR10J1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
OR10J1 MUTATED 0 1 1 3
OR10J1 WILD-TYPE 33 30 26 16
'OR10J1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S10698.  Gene #998: 'OR10J1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
OR10J1 MUTATED 3 0 1 1
OR10J1 WILD-TYPE 51 10 23 21
'MATN3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0313 (Fisher's exact test), Q value = 0.18

Table S10699.  Gene #999: 'MATN3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
MATN3 MUTATED 3 0 0 1
MATN3 WILD-TYPE 43 58 64 42

Figure S2903.  Get High-res Image Gene #999: 'MATN3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'MATN3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00309 (Fisher's exact test), Q value = 0.05

Table S10700.  Gene #999: 'MATN3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
MATN3 MUTATED 4 0 0
MATN3 WILD-TYPE 47 83 77

Figure S2904.  Get High-res Image Gene #999: 'MATN3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'MATN3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0219 (Fisher's exact test), Q value = 0.15

Table S10701.  Gene #999: 'MATN3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
MATN3 MUTATED 6 0 0 0
MATN3 WILD-TYPE 172 183 101 20

Figure S2905.  Get High-res Image Gene #999: 'MATN3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'MATN3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.332 (Fisher's exact test), Q value = 0.66

Table S10702.  Gene #999: 'MATN3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
MATN3 MUTATED 1 1 4
MATN3 WILD-TYPE 88 159 134
'MATN3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S10703.  Gene #999: 'MATN3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
MATN3 MUTATED 3 2 1
MATN3 WILD-TYPE 179 131 71
'MATN3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.48 (Fisher's exact test), Q value = 0.81

Table S10704.  Gene #999: 'MATN3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
MATN3 MUTATED 0 1 1 4
MATN3 WILD-TYPE 112 95 91 182
'MATN3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.03 (Fisher's exact test), Q value = 0.18

Table S10705.  Gene #999: 'MATN3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
MATN3 MUTATED 0 0 2 0 0 0 4
MATN3 WILD-TYPE 60 50 47 40 63 125 95

Figure S2906.  Get High-res Image Gene #999: 'MATN3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'MATN3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.932 (Fisher's exact test), Q value = 1

Table S10706.  Gene #999: 'MATN3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
MATN3 MUTATED 1 1 0 3
MATN3 WILD-TYPE 129 77 68 193
'MATN3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.284 (Fisher's exact test), Q value = 0.61

Table S10707.  Gene #999: 'MATN3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
MATN3 MUTATED 1 1 0 0 2 0 0 1 0
MATN3 WILD-TYPE 39 61 28 80 67 48 43 27 74
'HNMT MUTATION STATUS' versus 'CN_CNMF'

P value = 0.591 (Fisher's exact test), Q value = 0.9

Table S10708.  Gene #1000: 'HNMT MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
HNMT MUTATED 5 2 1 0
HNMT WILD-TYPE 173 181 100 20
'HNMT MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.29 (Fisher's exact test), Q value = 0.62

Table S10709.  Gene #1000: 'HNMT MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
HNMT MUTATED 3 0 3
HNMT WILD-TYPE 84 80 97
'HNMT MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.238 (Fisher's exact test), Q value = 0.56

Table S10710.  Gene #1000: 'HNMT MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
HNMT MUTATED 0 2 4
HNMT WILD-TYPE 89 158 134
'HNMT MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.666 (Fisher's exact test), Q value = 0.95

Table S10711.  Gene #1000: 'HNMT MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
HNMT MUTATED 4 2 0
HNMT WILD-TYPE 178 131 72
'HNMT MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0679 (Fisher's exact test), Q value = 0.28

Table S10712.  Gene #1000: 'HNMT MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
HNMT MUTATED 0 2 4 2
HNMT WILD-TYPE 112 94 88 184
'HNMT MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0481 (Fisher's exact test), Q value = 0.23

Table S10713.  Gene #1000: 'HNMT MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
HNMT MUTATED 3 0 3 0 0 1 1
HNMT WILD-TYPE 57 50 46 40 63 124 98

Figure S2907.  Get High-res Image Gene #1000: 'HNMT MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'HNMT MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.488 (Fisher's exact test), Q value = 0.81

Table S10714.  Gene #1000: 'HNMT MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
HNMT MUTATED 4 1 0 3
HNMT WILD-TYPE 126 77 68 193
'HNMT MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.409 (Fisher's exact test), Q value = 0.73

Table S10715.  Gene #1000: 'HNMT MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
HNMT MUTATED 0 1 1 3 2 0 0 1 0
HNMT WILD-TYPE 40 61 27 77 67 48 43 27 74
'HNMT MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.138 (Fisher's exact test), Q value = 0.41

Table S10716.  Gene #1000: 'HNMT MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
HNMT MUTATED 1 0 0 2
HNMT WILD-TYPE 32 31 27 17
'HNMT MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S10717.  Gene #1000: 'HNMT MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
HNMT MUTATED 2 0 1 0
HNMT WILD-TYPE 52 10 23 22
'PAGE2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.12 (Fisher's exact test), Q value = 0.39

Table S10718.  Gene #1001: 'PAGE2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
PAGE2 MUTATED 2 0 0 1
PAGE2 WILD-TYPE 44 58 64 42
'PAGE2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S10719.  Gene #1001: 'PAGE2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
PAGE2 MUTATED 1 1 1
PAGE2 WILD-TYPE 50 82 76
'PAGE2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.718 (Fisher's exact test), Q value = 0.99

Table S10720.  Gene #1001: 'PAGE2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
PAGE2 MUTATED 4 2 1 0
PAGE2 WILD-TYPE 174 181 100 20
'PAGE2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.875 (Fisher's exact test), Q value = 1

Table S10721.  Gene #1001: 'PAGE2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
PAGE2 MUTATED 2 1 3
PAGE2 WILD-TYPE 85 79 97
'PAGE2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.705 (Fisher's exact test), Q value = 0.98

Table S10722.  Gene #1001: 'PAGE2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
PAGE2 MUTATED 2 2 3
PAGE2 WILD-TYPE 87 158 135
'PAGE2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.365 (Fisher's exact test), Q value = 0.69

Table S10723.  Gene #1001: 'PAGE2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
PAGE2 MUTATED 5 2 0
PAGE2 WILD-TYPE 177 131 72
'PAGE2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.588 (Fisher's exact test), Q value = 0.89

Table S10724.  Gene #1001: 'PAGE2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
PAGE2 MUTATED 2 2 3 2
PAGE2 WILD-TYPE 110 94 89 184
'PAGE2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.571 (Fisher's exact test), Q value = 0.88

Table S10725.  Gene #1001: 'PAGE2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
PAGE2 MUTATED 2 2 1 1 0 2 1
PAGE2 WILD-TYPE 58 48 48 39 63 123 98
'PAGE2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.805 (Fisher's exact test), Q value = 1

Table S10726.  Gene #1001: 'PAGE2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
PAGE2 MUTATED 4 1 1 3
PAGE2 WILD-TYPE 126 77 67 193
'PAGE2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.713 (Fisher's exact test), Q value = 0.98

Table S10727.  Gene #1001: 'PAGE2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
PAGE2 MUTATED 0 2 1 2 1 1 1 1 0
PAGE2 WILD-TYPE 40 60 27 78 68 47 42 27 74
'PAGE2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.221 (Fisher's exact test), Q value = 0.53

Table S10728.  Gene #1001: 'PAGE2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
PAGE2 MUTATED 3 0 1 0
PAGE2 WILD-TYPE 30 31 26 19
'PAGE2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.546 (Fisher's exact test), Q value = 0.86

Table S10729.  Gene #1001: 'PAGE2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
PAGE2 MUTATED 2 0 0 2
PAGE2 WILD-TYPE 52 10 24 20
'MYH3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00163 (Fisher's exact test), Q value = 0.033

Table S10730.  Gene #1002: 'MYH3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
MYH3 MUTATED 5 0 0 3
MYH3 WILD-TYPE 41 58 64 40

Figure S2908.  Get High-res Image Gene #1002: 'MYH3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'MYH3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00358 (Fisher's exact test), Q value = 0.054

Table S10731.  Gene #1002: 'MYH3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
MYH3 MUTATED 6 1 1
MYH3 WILD-TYPE 45 82 76

Figure S2909.  Get High-res Image Gene #1002: 'MYH3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'MYH3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00237 (Fisher's exact test), Q value = 0.042

Table S10732.  Gene #1002: 'MYH3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
MYH3 MUTATED 23 7 4 3
MYH3 WILD-TYPE 155 176 97 17

Figure S2910.  Get High-res Image Gene #1002: 'MYH3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'MYH3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.103 (Fisher's exact test), Q value = 0.36

Table S10733.  Gene #1002: 'MYH3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
MYH3 MUTATED 11 4 14
MYH3 WILD-TYPE 76 76 86
'MYH3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00586 (Fisher's exact test), Q value = 0.069

Table S10734.  Gene #1002: 'MYH3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
MYH3 MUTATED 2 9 18
MYH3 WILD-TYPE 87 151 120

Figure S2911.  Get High-res Image Gene #1002: 'MYH3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'MYH3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.527 (Fisher's exact test), Q value = 0.85

Table S10735.  Gene #1002: 'MYH3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
MYH3 MUTATED 16 10 3
MYH3 WILD-TYPE 166 123 69
'MYH3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0303 (Fisher's exact test), Q value = 0.18

Table S10736.  Gene #1002: 'MYH3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
MYH3 MUTATED 6 14 8 9
MYH3 WILD-TYPE 106 82 84 177

Figure S2912.  Get High-res Image Gene #1002: 'MYH3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'MYH3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 6e-04 (Fisher's exact test), Q value = 0.018

Table S10737.  Gene #1002: 'MYH3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
MYH3 MUTATED 6 8 7 5 3 1 7
MYH3 WILD-TYPE 54 42 42 35 60 124 92

Figure S2913.  Get High-res Image Gene #1002: 'MYH3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'MYH3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0206 (Fisher's exact test), Q value = 0.14

Table S10738.  Gene #1002: 'MYH3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
MYH3 MUTATED 18 6 3 9
MYH3 WILD-TYPE 112 72 65 187

Figure S2914.  Get High-res Image Gene #1002: 'MYH3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'MYH3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.078 (Fisher's exact test), Q value = 0.3

Table S10739.  Gene #1002: 'MYH3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
MYH3 MUTATED 6 4 4 4 6 3 6 2 1
MYH3 WILD-TYPE 34 58 24 76 63 45 37 26 73
'MYH3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.279 (Fisher's exact test), Q value = 0.61

Table S10740.  Gene #1002: 'MYH3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
MYH3 MUTATED 4 1 1 3
MYH3 WILD-TYPE 29 30 26 16
'MYH3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.735 (Fisher's exact test), Q value = 1

Table S10741.  Gene #1002: 'MYH3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
MYH3 MUTATED 5 0 3 1
MYH3 WILD-TYPE 49 10 21 21
'OR6C1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.87 (Fisher's exact test), Q value = 1

Table S10742.  Gene #1003: 'OR6C1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
OR6C1 MUTATED 4 3 1 0
OR6C1 WILD-TYPE 174 180 100 20
'OR6C1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.664 (Fisher's exact test), Q value = 0.95

Table S10743.  Gene #1003: 'OR6C1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
OR6C1 MUTATED 4 2 2
OR6C1 WILD-TYPE 83 78 98
'OR6C1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.616 (Fisher's exact test), Q value = 0.92

Table S10744.  Gene #1003: 'OR6C1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
OR6C1 MUTATED 1 2 4
OR6C1 WILD-TYPE 88 158 134
'OR6C1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S10745.  Gene #1003: 'OR6C1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
OR6C1 MUTATED 4 2 1
OR6C1 WILD-TYPE 178 131 71
'OR6C1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0137 (Fisher's exact test), Q value = 0.12

Table S10746.  Gene #1003: 'OR6C1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
OR6C1 MUTATED 3 1 4 0
OR6C1 WILD-TYPE 109 95 88 186

Figure S2915.  Get High-res Image Gene #1003: 'OR6C1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'OR6C1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0154 (Fisher's exact test), Q value = 0.12

Table S10747.  Gene #1003: 'OR6C1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
OR6C1 MUTATED 3 1 1 0 3 0 0
OR6C1 WILD-TYPE 57 49 48 40 60 125 99

Figure S2916.  Get High-res Image Gene #1003: 'OR6C1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'OR6C1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.064 (Fisher's exact test), Q value = 0.27

Table S10748.  Gene #1003: 'OR6C1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
OR6C1 MUTATED 2 4 1 1
OR6C1 WILD-TYPE 128 74 67 195
'OR6C1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.728 (Fisher's exact test), Q value = 1

Table S10749.  Gene #1003: 'OR6C1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
OR6C1 MUTATED 1 2 1 2 0 0 1 0 1
OR6C1 WILD-TYPE 39 60 27 78 69 48 42 28 73
'OR6C1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.699 (Fisher's exact test), Q value = 0.97

Table S10750.  Gene #1003: 'OR6C1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
OR6C1 MUTATED 2 1 0 1
OR6C1 WILD-TYPE 31 30 27 18
'OR6C1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.431 (Fisher's exact test), Q value = 0.76

Table S10751.  Gene #1003: 'OR6C1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
OR6C1 MUTATED 4 0 0 0
OR6C1 WILD-TYPE 50 10 24 22
'GDE1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.627 (Fisher's exact test), Q value = 0.92

Table S10752.  Gene #1004: 'GDE1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
GDE1 MUTATED 3 1 2 0
GDE1 WILD-TYPE 175 182 99 20
'GDE1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.517 (Fisher's exact test), Q value = 0.84

Table S10753.  Gene #1004: 'GDE1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
GDE1 MUTATED 3 2 1
GDE1 WILD-TYPE 84 78 99
'GDE1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0617 (Fisher's exact test), Q value = 0.27

Table S10754.  Gene #1004: 'GDE1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
GDE1 MUTATED 1 0 4
GDE1 WILD-TYPE 88 160 134
'GDE1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.506 (Fisher's exact test), Q value = 0.83

Table S10755.  Gene #1004: 'GDE1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
GDE1 MUTATED 4 1 0
GDE1 WILD-TYPE 178 132 72
'GDE1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0459 (Fisher's exact test), Q value = 0.23

Table S10756.  Gene #1004: 'GDE1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
GDE1 MUTATED 1 2 3 0
GDE1 WILD-TYPE 111 94 89 186

Figure S2917.  Get High-res Image Gene #1004: 'GDE1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'GDE1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0365 (Fisher's exact test), Q value = 0.2

Table S10757.  Gene #1004: 'GDE1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
GDE1 MUTATED 1 1 0 1 3 0 0
GDE1 WILD-TYPE 59 49 49 39 60 125 99

Figure S2918.  Get High-res Image Gene #1004: 'GDE1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'GDE1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0332 (Fisher's exact test), Q value = 0.19

Table S10758.  Gene #1004: 'GDE1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
GDE1 MUTATED 1 4 0 1
GDE1 WILD-TYPE 129 74 68 195

Figure S2919.  Get High-res Image Gene #1004: 'GDE1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'GDE1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.051 (Fisher's exact test), Q value = 0.24

Table S10759.  Gene #1004: 'GDE1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
GDE1 MUTATED 1 4 0 0 0 0 0 0 1
GDE1 WILD-TYPE 39 58 28 80 69 48 43 28 73
'GRINA MUTATION STATUS' versus 'CN_CNMF'

P value = 0.738 (Fisher's exact test), Q value = 1

Table S10760.  Gene #1005: 'GRINA MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
GRINA MUTATED 2 2 0 0
GRINA WILD-TYPE 176 181 101 20
'GRINA MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.691 (Fisher's exact test), Q value = 0.97

Table S10761.  Gene #1005: 'GRINA MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
GRINA MUTATED 1 2 1
GRINA WILD-TYPE 86 78 99
'GRINA MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S10762.  Gene #1005: 'GRINA MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
GRINA MUTATED 1 2 1
GRINA WILD-TYPE 88 158 137
'GRINA MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0608 (Fisher's exact test), Q value = 0.27

Table S10763.  Gene #1005: 'GRINA MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
GRINA MUTATED 0 2 2
GRINA WILD-TYPE 182 131 70
'GRINA MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.417 (Fisher's exact test), Q value = 0.75

Table S10764.  Gene #1005: 'GRINA MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
GRINA MUTATED 1 2 0 1
GRINA WILD-TYPE 111 94 92 185
'GRINA MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.145 (Fisher's exact test), Q value = 0.42

Table S10765.  Gene #1005: 'GRINA MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
GRINA MUTATED 0 1 2 0 0 1 0
GRINA WILD-TYPE 60 49 47 40 63 124 99
'GRINA MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.536 (Fisher's exact test), Q value = 0.86

Table S10766.  Gene #1005: 'GRINA MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
GRINA MUTATED 2 0 1 1
GRINA WILD-TYPE 128 78 67 195
'GRINA MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.671 (Fisher's exact test), Q value = 0.95

Table S10767.  Gene #1005: 'GRINA MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
GRINA MUTATED 1 0 0 0 1 0 1 0 1
GRINA WILD-TYPE 39 62 28 80 68 48 42 28 73
'FRMD4B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.165 (Fisher's exact test), Q value = 0.46

Table S10768.  Gene #1006: 'FRMD4B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
FRMD4B MUTATED 6 2 0 0
FRMD4B WILD-TYPE 172 181 101 20
'FRMD4B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.682 (Fisher's exact test), Q value = 0.96

Table S10769.  Gene #1006: 'FRMD4B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
FRMD4B MUTATED 3 1 2
FRMD4B WILD-TYPE 84 79 98
'FRMD4B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.905 (Fisher's exact test), Q value = 1

Table S10770.  Gene #1006: 'FRMD4B MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
FRMD4B MUTATED 1 4 3
FRMD4B WILD-TYPE 88 156 135
'FRMD4B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.511 (Fisher's exact test), Q value = 0.83

Table S10771.  Gene #1006: 'FRMD4B MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
FRMD4B MUTATED 4 4 0
FRMD4B WILD-TYPE 178 129 72
'FRMD4B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0814 (Fisher's exact test), Q value = 0.31

Table S10772.  Gene #1006: 'FRMD4B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
FRMD4B MUTATED 0 4 2 2
FRMD4B WILD-TYPE 112 92 90 184
'FRMD4B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.265 (Fisher's exact test), Q value = 0.59

Table S10773.  Gene #1006: 'FRMD4B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
FRMD4B MUTATED 1 2 1 1 2 1 0
FRMD4B WILD-TYPE 59 48 48 39 61 124 99
'FRMD4B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.22 (Fisher's exact test), Q value = 0.53

Table S10774.  Gene #1006: 'FRMD4B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
FRMD4B MUTATED 4 2 1 1
FRMD4B WILD-TYPE 126 76 67 195
'FRMD4B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.931 (Fisher's exact test), Q value = 1

Table S10775.  Gene #1006: 'FRMD4B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
FRMD4B MUTATED 1 2 1 1 1 1 0 0 1
FRMD4B WILD-TYPE 39 60 27 79 68 47 43 28 73
'ARHGAP11A MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0724 (Fisher's exact test), Q value = 0.29

Table S10776.  Gene #1007: 'ARHGAP11A MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ARHGAP11A MUTATED 2 0 0 2
ARHGAP11A WILD-TYPE 44 58 64 41
'ARHGAP11A MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.834 (Fisher's exact test), Q value = 1

Table S10777.  Gene #1007: 'ARHGAP11A MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ARHGAP11A MUTATED 1 1 2
ARHGAP11A WILD-TYPE 50 82 75
'ARHGAP11A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0124 (Fisher's exact test), Q value = 0.11

Table S10778.  Gene #1007: 'ARHGAP11A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ARHGAP11A MUTATED 11 1 3 1
ARHGAP11A WILD-TYPE 167 182 98 19

Figure S2920.  Get High-res Image Gene #1007: 'ARHGAP11A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ARHGAP11A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.34 (Fisher's exact test), Q value = 0.67

Table S10779.  Gene #1007: 'ARHGAP11A MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ARHGAP11A MUTATED 6 2 3
ARHGAP11A WILD-TYPE 81 78 97
'ARHGAP11A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.63 (Fisher's exact test), Q value = 0.93

Table S10780.  Gene #1007: 'ARHGAP11A MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ARHGAP11A MUTATED 1 5 5
ARHGAP11A WILD-TYPE 88 155 133
'ARHGAP11A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.43 (Fisher's exact test), Q value = 0.76

Table S10781.  Gene #1007: 'ARHGAP11A MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ARHGAP11A MUTATED 4 6 1
ARHGAP11A WILD-TYPE 178 127 71
'ARHGAP11A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.309 (Fisher's exact test), Q value = 0.64

Table S10782.  Gene #1007: 'ARHGAP11A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ARHGAP11A MUTATED 3 3 6 4
ARHGAP11A WILD-TYPE 109 93 86 182
'ARHGAP11A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0318 (Fisher's exact test), Q value = 0.18

Table S10783.  Gene #1007: 'ARHGAP11A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ARHGAP11A MUTATED 2 2 5 0 4 1 2
ARHGAP11A WILD-TYPE 58 48 44 40 59 124 97

Figure S2921.  Get High-res Image Gene #1007: 'ARHGAP11A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ARHGAP11A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0634 (Fisher's exact test), Q value = 0.27

Table S10784.  Gene #1007: 'ARHGAP11A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ARHGAP11A MUTATED 5 6 0 5
ARHGAP11A WILD-TYPE 125 72 68 191
'ARHGAP11A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0961 (Fisher's exact test), Q value = 0.34

Table S10785.  Gene #1007: 'ARHGAP11A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ARHGAP11A MUTATED 0 4 1 6 3 2 0 0 0
ARHGAP11A WILD-TYPE 40 58 27 74 66 46 43 28 74
'ARHGAP11A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0971 (Fisher's exact test), Q value = 0.34

Table S10786.  Gene #1007: 'ARHGAP11A MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
ARHGAP11A MUTATED 2 0 0 2
ARHGAP11A WILD-TYPE 31 31 27 17
'ARHGAP11A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.87 (Fisher's exact test), Q value = 1

Table S10787.  Gene #1007: 'ARHGAP11A MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
ARHGAP11A MUTATED 3 0 1 0
ARHGAP11A WILD-TYPE 51 10 23 22
'CHRM2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.135 (Fisher's exact test), Q value = 0.41

Table S10788.  Gene #1008: 'CHRM2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
CHRM2 MUTATED 3 0 2 3
CHRM2 WILD-TYPE 43 58 62 40
'CHRM2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.311 (Fisher's exact test), Q value = 0.64

Table S10789.  Gene #1008: 'CHRM2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
CHRM2 MUTATED 4 2 2
CHRM2 WILD-TYPE 47 81 75
'CHRM2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00022 (Fisher's exact test), Q value = 0.0088

Table S10790.  Gene #1008: 'CHRM2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
CHRM2 MUTATED 20 4 1 1
CHRM2 WILD-TYPE 158 179 100 19

Figure S2922.  Get High-res Image Gene #1008: 'CHRM2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'CHRM2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0626 (Fisher's exact test), Q value = 0.27

Table S10791.  Gene #1008: 'CHRM2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
CHRM2 MUTATED 8 1 7
CHRM2 WILD-TYPE 79 79 93
'CHRM2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.546 (Fisher's exact test), Q value = 0.86

Table S10792.  Gene #1008: 'CHRM2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
CHRM2 MUTATED 6 12 6
CHRM2 WILD-TYPE 83 148 132
'CHRM2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0426 (Fisher's exact test), Q value = 0.22

Table S10793.  Gene #1008: 'CHRM2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
CHRM2 MUTATED 7 8 9
CHRM2 WILD-TYPE 175 125 63

Figure S2923.  Get High-res Image Gene #1008: 'CHRM2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'CHRM2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0171 (Fisher's exact test), Q value = 0.13

Table S10794.  Gene #1008: 'CHRM2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
CHRM2 MUTATED 1 10 5 9
CHRM2 WILD-TYPE 111 86 87 177

Figure S2924.  Get High-res Image Gene #1008: 'CHRM2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'CHRM2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.619 (Fisher's exact test), Q value = 0.92

Table S10795.  Gene #1008: 'CHRM2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
CHRM2 MUTATED 3 4 3 3 3 3 6
CHRM2 WILD-TYPE 57 46 46 37 60 122 93
'CHRM2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0809 (Fisher's exact test), Q value = 0.31

Table S10796.  Gene #1008: 'CHRM2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
CHRM2 MUTATED 10 3 0 12
CHRM2 WILD-TYPE 120 75 68 184
'CHRM2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0193 (Fisher's exact test), Q value = 0.14

Table S10797.  Gene #1008: 'CHRM2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
CHRM2 MUTATED 3 1 4 2 8 4 0 1 2
CHRM2 WILD-TYPE 37 61 24 78 61 44 43 27 72

Figure S2925.  Get High-res Image Gene #1008: 'CHRM2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'CHRM2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.668 (Fisher's exact test), Q value = 0.95

Table S10798.  Gene #1008: 'CHRM2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
CHRM2 MUTATED 1 1 1 2
CHRM2 WILD-TYPE 32 30 26 17
'CHRM2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.191 (Fisher's exact test), Q value = 0.49

Table S10799.  Gene #1008: 'CHRM2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
CHRM2 MUTATED 2 0 3 0
CHRM2 WILD-TYPE 52 10 21 22
'CEP290 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00083 (Fisher's exact test), Q value = 0.022

Table S10800.  Gene #1009: 'CEP290 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
CEP290 MUTATED 7 1 0 4
CEP290 WILD-TYPE 39 57 64 39

Figure S2926.  Get High-res Image Gene #1009: 'CEP290 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'CEP290 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00327 (Fisher's exact test), Q value = 0.051

Table S10801.  Gene #1009: 'CEP290 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
CEP290 MUTATED 8 3 1
CEP290 WILD-TYPE 43 80 76

Figure S2927.  Get High-res Image Gene #1009: 'CEP290 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'CEP290 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00024 (Fisher's exact test), Q value = 0.0094

Table S10802.  Gene #1009: 'CEP290 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
CEP290 MUTATED 21 4 2 2
CEP290 WILD-TYPE 157 179 99 18

Figure S2928.  Get High-res Image Gene #1009: 'CEP290 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'CEP290 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.125 (Fisher's exact test), Q value = 0.39

Table S10803.  Gene #1009: 'CEP290 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
CEP290 MUTATED 7 2 10
CEP290 WILD-TYPE 80 78 90
'CEP290 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.133 (Fisher's exact test), Q value = 0.41

Table S10804.  Gene #1009: 'CEP290 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
CEP290 MUTATED 5 6 13
CEP290 WILD-TYPE 84 154 125
'CEP290 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.672 (Fisher's exact test), Q value = 0.95

Table S10805.  Gene #1009: 'CEP290 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
CEP290 MUTATED 10 8 6
CEP290 WILD-TYPE 172 125 66
'CEP290 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0847 (Fisher's exact test), Q value = 0.31

Table S10806.  Gene #1009: 'CEP290 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
CEP290 MUTATED 3 11 5 12
CEP290 WILD-TYPE 109 85 87 174
'CEP290 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0661 (Fisher's exact test), Q value = 0.28

Table S10807.  Gene #1009: 'CEP290 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
CEP290 MUTATED 3 7 5 3 2 3 8
CEP290 WILD-TYPE 57 43 44 37 61 122 91
'CEP290 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.716 (Fisher's exact test), Q value = 0.99

Table S10808.  Gene #1009: 'CEP290 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
CEP290 MUTATED 11 4 3 12
CEP290 WILD-TYPE 119 74 65 184
'CEP290 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0477 (Fisher's exact test), Q value = 0.23

Table S10809.  Gene #1009: 'CEP290 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
CEP290 MUTATED 3 2 3 6 10 0 2 2 2
CEP290 WILD-TYPE 37 60 25 74 59 48 41 26 72

Figure S2929.  Get High-res Image Gene #1009: 'CEP290 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'CEP290 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.708 (Fisher's exact test), Q value = 0.98

Table S10810.  Gene #1009: 'CEP290 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
CEP290 MUTATED 2 1 3 1
CEP290 WILD-TYPE 31 30 24 18
'CEP290 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.606 (Fisher's exact test), Q value = 0.91

Table S10811.  Gene #1009: 'CEP290 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
CEP290 MUTATED 3 0 1 3
CEP290 WILD-TYPE 51 10 23 19
'MYBPH MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.612 (Fisher's exact test), Q value = 0.91

Table S10812.  Gene #1010: 'MYBPH MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
MYBPH MUTATED 2 1 1 0
MYBPH WILD-TYPE 44 57 63 43
'MYBPH MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.23 (Fisher's exact test), Q value = 0.55

Table S10813.  Gene #1010: 'MYBPH MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
MYBPH MUTATED 2 2 0
MYBPH WILD-TYPE 49 81 77
'MYBPH MUTATION STATUS' versus 'CN_CNMF'

P value = 0.265 (Fisher's exact test), Q value = 0.59

Table S10814.  Gene #1010: 'MYBPH MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
MYBPH MUTATED 3 3 0 1
MYBPH WILD-TYPE 175 180 101 19
'MYBPH MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.11 (Fisher's exact test), Q value = 0.37

Table S10815.  Gene #1010: 'MYBPH MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
MYBPH MUTATED 0 0 3
MYBPH WILD-TYPE 87 80 97
'MYBPH MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.581 (Fisher's exact test), Q value = 0.89

Table S10816.  Gene #1010: 'MYBPH MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
MYBPH MUTATED 1 4 1
MYBPH WILD-TYPE 88 156 137
'MYBPH MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0887 (Fisher's exact test), Q value = 0.32

Table S10817.  Gene #1010: 'MYBPH MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
MYBPH MUTATED 1 2 3
MYBPH WILD-TYPE 181 131 69
'MYBPH MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.138 (Fisher's exact test), Q value = 0.41

Table S10818.  Gene #1010: 'MYBPH MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
MYBPH MUTATED 0 3 0 4
MYBPH WILD-TYPE 112 93 92 182
'MYBPH MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.394 (Fisher's exact test), Q value = 0.72

Table S10819.  Gene #1010: 'MYBPH MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
MYBPH MUTATED 0 0 2 0 0 2 3
MYBPH WILD-TYPE 60 50 47 40 63 123 96
'MYBPH MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.436 (Fisher's exact test), Q value = 0.76

Table S10820.  Gene #1010: 'MYBPH MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
MYBPH MUTATED 2 0 0 5
MYBPH WILD-TYPE 128 78 68 191
'MYBPH MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0912 (Fisher's exact test), Q value = 0.33

Table S10821.  Gene #1010: 'MYBPH MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
MYBPH MUTATED 0 0 0 0 4 0 1 1 1
MYBPH WILD-TYPE 40 62 28 80 65 48 42 27 73
'A2M MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00334 (Fisher's exact test), Q value = 0.052

Table S10822.  Gene #1011: 'A2M MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
A2M MUTATED 6 1 0 2
A2M WILD-TYPE 40 57 64 41

Figure S2930.  Get High-res Image Gene #1011: 'A2M MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'A2M MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0166 (Fisher's exact test), Q value = 0.13

Table S10823.  Gene #1011: 'A2M MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
A2M MUTATED 6 2 1
A2M WILD-TYPE 45 81 76

Figure S2931.  Get High-res Image Gene #1011: 'A2M MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'A2M MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00985 (Fisher's exact test), Q value = 0.094

Table S10824.  Gene #1011: 'A2M MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
A2M MUTATED 18 4 6 0
A2M WILD-TYPE 160 179 95 20

Figure S2932.  Get High-res Image Gene #1011: 'A2M MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'A2M MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.284 (Fisher's exact test), Q value = 0.61

Table S10825.  Gene #1011: 'A2M MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
A2M MUTATED 9 3 7
A2M WILD-TYPE 78 77 93
'A2M MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00345 (Fisher's exact test), Q value = 0.053

Table S10826.  Gene #1011: 'A2M MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
A2M MUTATED 4 3 15
A2M WILD-TYPE 85 157 123

Figure S2933.  Get High-res Image Gene #1011: 'A2M MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'A2M MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.16 (Fisher's exact test), Q value = 0.45

Table S10827.  Gene #1011: 'A2M MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
A2M MUTATED 15 5 2
A2M WILD-TYPE 167 128 70
'A2M MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.186 (Fisher's exact test), Q value = 0.49

Table S10828.  Gene #1011: 'A2M MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
A2M MUTATED 4 7 9 8
A2M WILD-TYPE 108 89 83 178
'A2M MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0384 (Fisher's exact test), Q value = 0.21

Table S10829.  Gene #1011: 'A2M MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
A2M MUTATED 3 4 7 3 2 2 7
A2M WILD-TYPE 57 46 42 37 61 123 92

Figure S2934.  Get High-res Image Gene #1011: 'A2M MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'A2M MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.685 (Fisher's exact test), Q value = 0.96

Table S10830.  Gene #1011: 'A2M MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
A2M MUTATED 5 5 5 12
A2M WILD-TYPE 125 73 63 184
'A2M MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0597 (Fisher's exact test), Q value = 0.27

Table S10831.  Gene #1011: 'A2M MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
A2M MUTATED 2 7 1 4 5 0 3 4 1
A2M WILD-TYPE 38 55 27 76 64 48 40 24 73
'A2M MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0954 (Fisher's exact test), Q value = 0.34

Table S10832.  Gene #1011: 'A2M MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
A2M MUTATED 5 0 4 2
A2M WILD-TYPE 28 31 23 17
'A2M MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.865 (Fisher's exact test), Q value = 1

Table S10833.  Gene #1011: 'A2M MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
A2M MUTATED 6 1 3 1
A2M WILD-TYPE 48 9 21 21
'ADM MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0216 (Fisher's exact test), Q value = 0.15

Table S10834.  Gene #1012: 'ADM MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ADM MUTATED 6 0 0 0
ADM WILD-TYPE 172 183 101 20

Figure S2935.  Get High-res Image Gene #1012: 'ADM MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ADM MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.556 (Fisher's exact test), Q value = 0.87

Table S10835.  Gene #1012: 'ADM MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ADM MUTATED 2 0 2
ADM WILD-TYPE 85 80 98
'ADM MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.548 (Fisher's exact test), Q value = 0.87

Table S10836.  Gene #1012: 'ADM MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ADM MUTATED 1 1 3
ADM WILD-TYPE 88 159 135
'ADM MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.717 (Fisher's exact test), Q value = 0.99

Table S10837.  Gene #1012: 'ADM MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ADM MUTATED 3 2 0
ADM WILD-TYPE 179 131 72
'ADM MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.132 (Fisher's exact test), Q value = 0.41

Table S10838.  Gene #1012: 'ADM MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ADM MUTATED 0 3 0 3
ADM WILD-TYPE 112 93 92 183
'ADM MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0152 (Fisher's exact test), Q value = 0.12

Table S10839.  Gene #1012: 'ADM MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ADM MUTATED 0 0 3 0 0 0 3
ADM WILD-TYPE 60 50 46 40 63 125 96

Figure S2936.  Get High-res Image Gene #1012: 'ADM MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ADM MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.636 (Fisher's exact test), Q value = 0.93

Table S10840.  Gene #1012: 'ADM MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ADM MUTATED 2 0 0 4
ADM WILD-TYPE 128 78 68 192
'ADM MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0171 (Fisher's exact test), Q value = 0.13

Table S10841.  Gene #1012: 'ADM MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ADM MUTATED 0 0 0 0 5 0 0 0 1
ADM WILD-TYPE 40 62 28 80 64 48 43 28 73

Figure S2937.  Get High-res Image Gene #1012: 'ADM MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'COL3A1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0013 (Fisher's exact test), Q value = 0.029

Table S10842.  Gene #1013: 'COL3A1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
COL3A1 MUTATED 7 0 1 3
COL3A1 WILD-TYPE 39 58 63 40

Figure S2938.  Get High-res Image Gene #1013: 'COL3A1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'COL3A1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00092 (Fisher's exact test), Q value = 0.023

Table S10843.  Gene #1013: 'COL3A1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
COL3A1 MUTATED 8 1 2
COL3A1 WILD-TYPE 43 82 75

Figure S2939.  Get High-res Image Gene #1013: 'COL3A1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'COL3A1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00553 (Fisher's exact test), Q value = 0.067

Table S10844.  Gene #1013: 'COL3A1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
COL3A1 MUTATED 21 9 2 0
COL3A1 WILD-TYPE 157 174 99 20

Figure S2940.  Get High-res Image Gene #1013: 'COL3A1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'COL3A1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.518 (Fisher's exact test), Q value = 0.84

Table S10845.  Gene #1013: 'COL3A1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
COL3A1 MUTATED 9 5 6
COL3A1 WILD-TYPE 78 75 94
'COL3A1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.292 (Fisher's exact test), Q value = 0.62

Table S10846.  Gene #1013: 'COL3A1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
COL3A1 MUTATED 4 9 13
COL3A1 WILD-TYPE 85 151 125
'COL3A1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.741 (Fisher's exact test), Q value = 1

Table S10847.  Gene #1013: 'COL3A1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
COL3A1 MUTATED 14 7 5
COL3A1 WILD-TYPE 168 126 67
'COL3A1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.735 (Fisher's exact test), Q value = 1

Table S10848.  Gene #1013: 'COL3A1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
COL3A1 MUTATED 7 8 4 13
COL3A1 WILD-TYPE 105 88 88 173
'COL3A1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00064 (Fisher's exact test), Q value = 0.018

Table S10849.  Gene #1013: 'COL3A1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
COL3A1 MUTATED 3 3 3 9 2 2 10
COL3A1 WILD-TYPE 57 47 46 31 61 123 89

Figure S2941.  Get High-res Image Gene #1013: 'COL3A1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'COL3A1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0484 (Fisher's exact test), Q value = 0.23

Table S10850.  Gene #1013: 'COL3A1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
COL3A1 MUTATED 14 1 4 11
COL3A1 WILD-TYPE 116 77 64 185

Figure S2942.  Get High-res Image Gene #1013: 'COL3A1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'COL3A1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.192 (Fisher's exact test), Q value = 0.49

Table S10851.  Gene #1013: 'COL3A1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
COL3A1 MUTATED 4 2 2 4 9 4 3 0 2
COL3A1 WILD-TYPE 36 60 26 76 60 44 40 28 72
'COL3A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.538 (Fisher's exact test), Q value = 0.86

Table S10852.  Gene #1013: 'COL3A1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
COL3A1 MUTATED 1 1 3 1
COL3A1 WILD-TYPE 32 30 24 18
'COL3A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.921 (Fisher's exact test), Q value = 1

Table S10853.  Gene #1013: 'COL3A1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
COL3A1 MUTATED 3 0 2 1
COL3A1 WILD-TYPE 51 10 22 21
'CCAR1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.257 (Fisher's exact test), Q value = 0.58

Table S10854.  Gene #1014: 'CCAR1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
CCAR1 MUTATED 2 0 1 2
CCAR1 WILD-TYPE 44 58 63 41
'CCAR1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.641 (Fisher's exact test), Q value = 0.93

Table S10855.  Gene #1014: 'CCAR1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
CCAR1 MUTATED 2 1 2
CCAR1 WILD-TYPE 49 82 75
'CCAR1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0268 (Fisher's exact test), Q value = 0.17

Table S10856.  Gene #1014: 'CCAR1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
CCAR1 MUTATED 14 3 3 0
CCAR1 WILD-TYPE 164 180 98 20

Figure S2943.  Get High-res Image Gene #1014: 'CCAR1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'CCAR1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0983 (Fisher's exact test), Q value = 0.34

Table S10857.  Gene #1014: 'CCAR1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
CCAR1 MUTATED 7 1 7
CCAR1 WILD-TYPE 80 79 93
'CCAR1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.264 (Fisher's exact test), Q value = 0.59

Table S10858.  Gene #1014: 'CCAR1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
CCAR1 MUTATED 1 8 7
CCAR1 WILD-TYPE 88 152 131
'CCAR1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0539 (Fisher's exact test), Q value = 0.25

Table S10859.  Gene #1014: 'CCAR1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
CCAR1 MUTATED 7 9 0
CCAR1 WILD-TYPE 175 124 72
'CCAR1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0764 (Fisher's exact test), Q value = 0.3

Table S10860.  Gene #1014: 'CCAR1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
CCAR1 MUTATED 2 8 5 5
CCAR1 WILD-TYPE 110 88 87 181
'CCAR1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0422 (Fisher's exact test), Q value = 0.22

Table S10861.  Gene #1014: 'CCAR1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
CCAR1 MUTATED 2 6 4 0 2 2 4
CCAR1 WILD-TYPE 58 44 45 40 61 123 95

Figure S2944.  Get High-res Image Gene #1014: 'CCAR1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CCAR1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.905 (Fisher's exact test), Q value = 1

Table S10862.  Gene #1014: 'CCAR1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
CCAR1 MUTATED 7 3 2 8
CCAR1 WILD-TYPE 123 75 66 188
'CCAR1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.636 (Fisher's exact test), Q value = 0.93

Table S10863.  Gene #1014: 'CCAR1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
CCAR1 MUTATED 1 3 1 2 5 1 4 0 3
CCAR1 WILD-TYPE 39 59 27 78 64 47 39 28 71
'CCAR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.402 (Fisher's exact test), Q value = 0.73

Table S10864.  Gene #1014: 'CCAR1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
CCAR1 MUTATED 2 2 0 2
CCAR1 WILD-TYPE 31 29 27 17
'CCAR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.566 (Fisher's exact test), Q value = 0.87

Table S10865.  Gene #1014: 'CCAR1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
CCAR1 MUTATED 4 1 1 0
CCAR1 WILD-TYPE 50 9 23 22
'ZNF182 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0057 (Fisher's exact test), Q value = 0.068

Table S10866.  Gene #1015: 'ZNF182 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ZNF182 MUTATED 2 0 0 4
ZNF182 WILD-TYPE 44 58 64 39

Figure S2945.  Get High-res Image Gene #1015: 'ZNF182 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'ZNF182 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.88 (Fisher's exact test), Q value = 1

Table S10867.  Gene #1015: 'ZNF182 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ZNF182 MUTATED 2 2 2
ZNF182 WILD-TYPE 49 81 75
'ZNF182 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00846 (Fisher's exact test), Q value = 0.086

Table S10868.  Gene #1015: 'ZNF182 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ZNF182 MUTATED 12 1 3 0
ZNF182 WILD-TYPE 166 182 98 20

Figure S2946.  Get High-res Image Gene #1015: 'ZNF182 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ZNF182 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.368 (Fisher's exact test), Q value = 0.7

Table S10869.  Gene #1015: 'ZNF182 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ZNF182 MUTATED 4 1 5
ZNF182 WILD-TYPE 83 79 95
'ZNF182 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.42 (Fisher's exact test), Q value = 0.75

Table S10870.  Gene #1015: 'ZNF182 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ZNF182 MUTATED 1 5 6
ZNF182 WILD-TYPE 88 155 132
'ZNF182 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.396 (Fisher's exact test), Q value = 0.72

Table S10871.  Gene #1015: 'ZNF182 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ZNF182 MUTATED 7 2 3
ZNF182 WILD-TYPE 175 131 69
'ZNF182 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.268 (Fisher's exact test), Q value = 0.59

Table S10872.  Gene #1015: 'ZNF182 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ZNF182 MUTATED 1 5 4 6
ZNF182 WILD-TYPE 111 91 88 180
'ZNF182 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0898 (Fisher's exact test), Q value = 0.33

Table S10873.  Gene #1015: 'ZNF182 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ZNF182 MUTATED 1 2 3 0 5 1 4
ZNF182 WILD-TYPE 59 48 46 40 58 124 95
'ZNF182 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.241 (Fisher's exact test), Q value = 0.56

Table S10874.  Gene #1015: 'ZNF182 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ZNF182 MUTATED 7 3 0 6
ZNF182 WILD-TYPE 123 75 68 190
'ZNF182 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0386 (Fisher's exact test), Q value = 0.21

Table S10875.  Gene #1015: 'ZNF182 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ZNF182 MUTATED 1 2 3 3 6 0 1 0 0
ZNF182 WILD-TYPE 39 60 25 77 63 48 42 28 74

Figure S2947.  Get High-res Image Gene #1015: 'ZNF182 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'CXXC5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.102 (Fisher's exact test), Q value = 0.35

Table S10876.  Gene #1016: 'CXXC5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
CXXC5 MUTATED 4 1 0 1
CXXC5 WILD-TYPE 174 182 101 19
'CXXC5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.198 (Fisher's exact test), Q value = 0.5

Table S10877.  Gene #1016: 'CXXC5 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
CXXC5 MUTATED 1 0 4
CXXC5 WILD-TYPE 86 80 96
'CXXC5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.635 (Fisher's exact test), Q value = 0.93

Table S10878.  Gene #1016: 'CXXC5 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
CXXC5 MUTATED 0 3 2
CXXC5 WILD-TYPE 89 157 136
'CXXC5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.598 (Fisher's exact test), Q value = 0.9

Table S10879.  Gene #1016: 'CXXC5 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
CXXC5 MUTATED 2 3 0
CXXC5 WILD-TYPE 180 130 72
'CXXC5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0841 (Fisher's exact test), Q value = 0.31

Table S10880.  Gene #1016: 'CXXC5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
CXXC5 MUTATED 0 2 3 1
CXXC5 WILD-TYPE 112 94 89 185
'CXXC5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0444 (Fisher's exact test), Q value = 0.22

Table S10881.  Gene #1016: 'CXXC5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
CXXC5 MUTATED 0 1 3 0 1 0 1
CXXC5 WILD-TYPE 60 49 46 40 62 125 98

Figure S2948.  Get High-res Image Gene #1016: 'CXXC5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CXXC5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.602 (Fisher's exact test), Q value = 0.91

Table S10882.  Gene #1016: 'CXXC5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
CXXC5 MUTATED 1 2 0 3
CXXC5 WILD-TYPE 129 76 68 193
'CXXC5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.696 (Fisher's exact test), Q value = 0.97

Table S10883.  Gene #1016: 'CXXC5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
CXXC5 MUTATED 0 3 0 1 1 0 0 0 1
CXXC5 WILD-TYPE 40 59 28 79 68 48 43 28 73
'SPAG1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.444 (Fisher's exact test), Q value = 0.77

Table S10884.  Gene #1017: 'SPAG1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
SPAG1 MUTATED 1 1 1 3
SPAG1 WILD-TYPE 45 57 63 40
'SPAG1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S10885.  Gene #1017: 'SPAG1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
SPAG1 MUTATED 1 3 2
SPAG1 WILD-TYPE 50 80 75
'SPAG1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.286 (Fisher's exact test), Q value = 0.61

Table S10886.  Gene #1017: 'SPAG1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
SPAG1 MUTATED 8 3 1 0
SPAG1 WILD-TYPE 170 180 100 20
'SPAG1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0281 (Fisher's exact test), Q value = 0.17

Table S10887.  Gene #1017: 'SPAG1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
SPAG1 MUTATED 5 0 1
SPAG1 WILD-TYPE 82 80 99

Figure S2949.  Get High-res Image Gene #1017: 'SPAG1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'SPAG1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S10888.  Gene #1017: 'SPAG1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
SPAG1 MUTATED 2 4 3
SPAG1 WILD-TYPE 87 156 135
'SPAG1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.215 (Fisher's exact test), Q value = 0.53

Table S10889.  Gene #1017: 'SPAG1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
SPAG1 MUTATED 2 4 3
SPAG1 WILD-TYPE 180 129 69
'SPAG1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.59 (Fisher's exact test), Q value = 0.89

Table S10890.  Gene #1017: 'SPAG1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
SPAG1 MUTATED 1 2 3 6
SPAG1 WILD-TYPE 111 94 89 180
'SPAG1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.889 (Fisher's exact test), Q value = 1

Table S10891.  Gene #1017: 'SPAG1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
SPAG1 MUTATED 2 1 1 2 1 2 3
SPAG1 WILD-TYPE 58 49 48 38 62 123 96
'SPAG1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.845 (Fisher's exact test), Q value = 1

Table S10892.  Gene #1017: 'SPAG1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
SPAG1 MUTATED 3 3 1 5
SPAG1 WILD-TYPE 127 75 67 191
'SPAG1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.549 (Fisher's exact test), Q value = 0.87

Table S10893.  Gene #1017: 'SPAG1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
SPAG1 MUTATED 2 1 2 3 2 0 0 0 2
SPAG1 WILD-TYPE 38 61 26 77 67 48 43 28 72
'KIAA0649 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00451 (Fisher's exact test), Q value = 0.061

Table S10894.  Gene #1018: 'KIAA0649 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
KIAA0649 MUTATED 9 0 1 0
KIAA0649 WILD-TYPE 169 183 100 20

Figure S2950.  Get High-res Image Gene #1018: 'KIAA0649 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'KIAA0649 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00966 (Fisher's exact test), Q value = 0.093

Table S10895.  Gene #1018: 'KIAA0649 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
KIAA0649 MUTATED 1 0 7
KIAA0649 WILD-TYPE 86 80 93

Figure S2951.  Get High-res Image Gene #1018: 'KIAA0649 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'KIAA0649 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0954 (Fisher's exact test), Q value = 0.34

Table S10896.  Gene #1018: 'KIAA0649 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
KIAA0649 MUTATED 4 1 3
KIAA0649 WILD-TYPE 85 159 135
'KIAA0649 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.809 (Fisher's exact test), Q value = 1

Table S10897.  Gene #1018: 'KIAA0649 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
KIAA0649 MUTATED 4 2 2
KIAA0649 WILD-TYPE 178 131 70
'KIAA0649 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0241 (Fisher's exact test), Q value = 0.16

Table S10898.  Gene #1018: 'KIAA0649 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
KIAA0649 MUTATED 0 5 3 2
KIAA0649 WILD-TYPE 112 91 89 184

Figure S2952.  Get High-res Image Gene #1018: 'KIAA0649 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'KIAA0649 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 2e-05 (Fisher's exact test), Q value = 0.0017

Table S10899.  Gene #1018: 'KIAA0649 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
KIAA0649 MUTATED 0 0 7 0 1 0 2
KIAA0649 WILD-TYPE 60 50 42 40 62 125 97

Figure S2953.  Get High-res Image Gene #1018: 'KIAA0649 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'KIAA0649 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.162 (Fisher's exact test), Q value = 0.46

Table S10900.  Gene #1018: 'KIAA0649 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
KIAA0649 MUTATED 6 1 0 3
KIAA0649 WILD-TYPE 124 77 68 193
'KIAA0649 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0387 (Fisher's exact test), Q value = 0.21

Table S10901.  Gene #1018: 'KIAA0649 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
KIAA0649 MUTATED 1 1 0 1 5 0 0 2 0
KIAA0649 WILD-TYPE 39 61 28 79 64 48 43 26 74

Figure S2954.  Get High-res Image Gene #1018: 'KIAA0649 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'SPZ1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0735 (Fisher's exact test), Q value = 0.29

Table S10902.  Gene #1019: 'SPZ1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
SPZ1 MUTATED 2 0 0 2
SPZ1 WILD-TYPE 44 58 64 41
'SPZ1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.835 (Fisher's exact test), Q value = 1

Table S10903.  Gene #1019: 'SPZ1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
SPZ1 MUTATED 1 1 2
SPZ1 WILD-TYPE 50 82 75
'SPZ1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00511 (Fisher's exact test), Q value = 0.064

Table S10904.  Gene #1019: 'SPZ1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
SPZ1 MUTATED 10 1 0 0
SPZ1 WILD-TYPE 168 182 101 20

Figure S2955.  Get High-res Image Gene #1019: 'SPZ1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'SPZ1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.205 (Fisher's exact test), Q value = 0.51

Table S10905.  Gene #1019: 'SPZ1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
SPZ1 MUTATED 3 0 4
SPZ1 WILD-TYPE 84 80 96
'SPZ1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.238 (Fisher's exact test), Q value = 0.56

Table S10906.  Gene #1019: 'SPZ1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
SPZ1 MUTATED 0 2 4
SPZ1 WILD-TYPE 89 158 134
'SPZ1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.578 (Fisher's exact test), Q value = 0.88

Table S10907.  Gene #1019: 'SPZ1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
SPZ1 MUTATED 3 3 0
SPZ1 WILD-TYPE 179 130 72
'SPZ1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.925 (Fisher's exact test), Q value = 1

Table S10908.  Gene #1019: 'SPZ1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
SPZ1 MUTATED 2 2 3 4
SPZ1 WILD-TYPE 110 94 89 182
'SPZ1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.613 (Fisher's exact test), Q value = 0.91

Table S10909.  Gene #1019: 'SPZ1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
SPZ1 MUTATED 2 2 2 1 1 1 2
SPZ1 WILD-TYPE 58 48 47 39 62 124 97
'SPZ1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.641 (Fisher's exact test), Q value = 0.93

Table S10910.  Gene #1019: 'SPZ1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
SPZ1 MUTATED 4 2 0 5
SPZ1 WILD-TYPE 126 76 68 191
'SPZ1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.779 (Fisher's exact test), Q value = 1

Table S10911.  Gene #1019: 'SPZ1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
SPZ1 MUTATED 1 2 1 2 3 1 1 0 0
SPZ1 WILD-TYPE 39 60 27 78 66 47 42 28 74
'SPZ1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.27 (Fisher's exact test), Q value = 0.6

Table S10912.  Gene #1019: 'SPZ1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
SPZ1 MUTATED 1 0 1 2
SPZ1 WILD-TYPE 32 31 26 17
'SPZ1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.545 (Fisher's exact test), Q value = 0.86

Table S10913.  Gene #1019: 'SPZ1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
SPZ1 MUTATED 2 0 0 2
SPZ1 WILD-TYPE 52 10 24 20
'MLLT1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.625 (Fisher's exact test), Q value = 0.92

Table S10914.  Gene #1020: 'MLLT1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
MLLT1 MUTATED 3 1 2 0
MLLT1 WILD-TYPE 175 182 99 20
'MLLT1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.863 (Fisher's exact test), Q value = 1

Table S10915.  Gene #1020: 'MLLT1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
MLLT1 MUTATED 1 2 2
MLLT1 WILD-TYPE 86 78 98
'MLLT1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.658 (Fisher's exact test), Q value = 0.94

Table S10916.  Gene #1020: 'MLLT1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
MLLT1 MUTATED 2 3 1
MLLT1 WILD-TYPE 87 157 137
'MLLT1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.243 (Fisher's exact test), Q value = 0.57

Table S10917.  Gene #1020: 'MLLT1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
MLLT1 MUTATED 1 3 2
MLLT1 WILD-TYPE 181 130 70
'MLLT1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.298 (Fisher's exact test), Q value = 0.63

Table S10918.  Gene #1020: 'MLLT1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
MLLT1 MUTATED 1 3 1 1
MLLT1 WILD-TYPE 111 93 91 185
'MLLT1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.436 (Fisher's exact test), Q value = 0.76

Table S10919.  Gene #1020: 'MLLT1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
MLLT1 MUTATED 1 1 1 1 1 0 1
MLLT1 WILD-TYPE 59 49 48 39 62 125 98
'MLLT1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.45 (Fisher's exact test), Q value = 0.78

Table S10920.  Gene #1020: 'MLLT1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
MLLT1 MUTATED 3 1 1 1
MLLT1 WILD-TYPE 127 77 67 195
'MLLT1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.554 (Fisher's exact test), Q value = 0.87

Table S10921.  Gene #1020: 'MLLT1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
MLLT1 MUTATED 2 1 0 1 1 0 1 0 0
MLLT1 WILD-TYPE 38 61 28 79 68 48 42 28 74
'DLL3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0647 (Fisher's exact test), Q value = 0.28

Table S10922.  Gene #1021: 'DLL3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
DLL3 MUTATED 1 0 0 2
DLL3 WILD-TYPE 45 58 64 41
'DLL3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S10923.  Gene #1021: 'DLL3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
DLL3 MUTATED 1 1 1
DLL3 WILD-TYPE 50 82 76
'DLL3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00969 (Fisher's exact test), Q value = 0.094

Table S10924.  Gene #1021: 'DLL3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
DLL3 MUTATED 7 0 0 0
DLL3 WILD-TYPE 171 183 101 20

Figure S2956.  Get High-res Image Gene #1021: 'DLL3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'DLL3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.557 (Fisher's exact test), Q value = 0.87

Table S10925.  Gene #1021: 'DLL3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
DLL3 MUTATED 2 0 2
DLL3 WILD-TYPE 85 80 98
'DLL3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.239 (Fisher's exact test), Q value = 0.56

Table S10926.  Gene #1021: 'DLL3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
DLL3 MUTATED 0 2 4
DLL3 WILD-TYPE 89 158 134
'DLL3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S10927.  Gene #1021: 'DLL3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
DLL3 MUTATED 3 2 1
DLL3 WILD-TYPE 179 131 71
'DLL3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.457 (Fisher's exact test), Q value = 0.78

Table S10928.  Gene #1021: 'DLL3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
DLL3 MUTATED 0 2 2 3
DLL3 WILD-TYPE 112 94 90 183
'DLL3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0269 (Fisher's exact test), Q value = 0.17

Table S10929.  Gene #1021: 'DLL3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
DLL3 MUTATED 0 1 3 0 0 0 3
DLL3 WILD-TYPE 60 49 46 40 63 125 96

Figure S2957.  Get High-res Image Gene #1021: 'DLL3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'DLL3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.437 (Fisher's exact test), Q value = 0.76

Table S10930.  Gene #1021: 'DLL3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
DLL3 MUTATED 2 0 0 5
DLL3 WILD-TYPE 128 78 68 191
'DLL3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0334 (Fisher's exact test), Q value = 0.19

Table S10931.  Gene #1021: 'DLL3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
DLL3 MUTATED 0 2 2 0 3 0 0 0 0
DLL3 WILD-TYPE 40 60 26 80 66 48 43 28 74

Figure S2958.  Get High-res Image Gene #1021: 'DLL3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'PHF1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.283 (Fisher's exact test), Q value = 0.61

Table S10932.  Gene #1022: 'PHF1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
PHF1 MUTATED 5 2 0 0
PHF1 WILD-TYPE 173 181 101 20
'PHF1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.877 (Fisher's exact test), Q value = 1

Table S10933.  Gene #1022: 'PHF1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
PHF1 MUTATED 2 1 3
PHF1 WILD-TYPE 85 79 97
'PHF1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S10934.  Gene #1022: 'PHF1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
PHF1 MUTATED 1 3 3
PHF1 WILD-TYPE 88 157 135
'PHF1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.682 (Fisher's exact test), Q value = 0.96

Table S10935.  Gene #1022: 'PHF1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
PHF1 MUTATED 4 3 0
PHF1 WILD-TYPE 178 130 72
'PHF1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.218 (Fisher's exact test), Q value = 0.53

Table S10936.  Gene #1022: 'PHF1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
PHF1 MUTATED 1 2 3 1
PHF1 WILD-TYPE 111 94 89 185
'PHF1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00876 (Fisher's exact test), Q value = 0.087

Table S10937.  Gene #1022: 'PHF1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
PHF1 MUTATED 0 0 4 1 1 1 0
PHF1 WILD-TYPE 60 50 45 39 62 124 99

Figure S2959.  Get High-res Image Gene #1022: 'PHF1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'PHF1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0293 (Fisher's exact test), Q value = 0.17

Table S10938.  Gene #1022: 'PHF1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
PHF1 MUTATED 4 2 0 0
PHF1 WILD-TYPE 126 76 68 196

Figure S2960.  Get High-res Image Gene #1022: 'PHF1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'PHF1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.425 (Fisher's exact test), Q value = 0.75

Table S10939.  Gene #1022: 'PHF1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
PHF1 MUTATED 1 2 0 0 2 1 0 0 0
PHF1 WILD-TYPE 39 60 28 80 67 47 43 28 74
'PHF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.135 (Fisher's exact test), Q value = 0.41

Table S10940.  Gene #1022: 'PHF1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
PHF1 MUTATED 1 0 0 2
PHF1 WILD-TYPE 32 31 27 17
'PHF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S10941.  Gene #1022: 'PHF1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
PHF1 MUTATED 2 0 1 0
PHF1 WILD-TYPE 52 10 23 22
'IFNAR1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.439 (Fisher's exact test), Q value = 0.77

Table S10942.  Gene #1023: 'IFNAR1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
IFNAR1 MUTATED 2 0 1 1
IFNAR1 WILD-TYPE 44 58 63 42
'IFNAR1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.555 (Fisher's exact test), Q value = 0.87

Table S10943.  Gene #1023: 'IFNAR1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
IFNAR1 MUTATED 2 1 1
IFNAR1 WILD-TYPE 49 82 76
'IFNAR1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.73 (Fisher's exact test), Q value = 1

Table S10944.  Gene #1023: 'IFNAR1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
IFNAR1 MUTATED 3 3 0 0
IFNAR1 WILD-TYPE 175 180 101 20
'IFNAR1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S10945.  Gene #1023: 'IFNAR1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
IFNAR1 MUTATED 1 1 1
IFNAR1 WILD-TYPE 86 79 99
'IFNAR1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.139 (Fisher's exact test), Q value = 0.41

Table S10946.  Gene #1023: 'IFNAR1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
IFNAR1 MUTATED 0 1 4
IFNAR1 WILD-TYPE 89 159 134
'IFNAR1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.719 (Fisher's exact test), Q value = 0.99

Table S10947.  Gene #1023: 'IFNAR1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
IFNAR1 MUTATED 3 2 0
IFNAR1 WILD-TYPE 179 131 72
'IFNAR1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S10948.  Gene #1023: 'IFNAR1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
IFNAR1 MUTATED 2 1 1 3
IFNAR1 WILD-TYPE 110 95 91 183
'IFNAR1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.458 (Fisher's exact test), Q value = 0.78

Table S10949.  Gene #1023: 'IFNAR1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
IFNAR1 MUTATED 2 1 0 0 0 1 3
IFNAR1 WILD-TYPE 58 49 49 40 63 124 96
'IFNAR1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.793 (Fisher's exact test), Q value = 1

Table S10950.  Gene #1023: 'IFNAR1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
IFNAR1 MUTATED 2 0 1 4
IFNAR1 WILD-TYPE 128 78 67 192
'IFNAR1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.12 (Fisher's exact test), Q value = 0.39

Table S10951.  Gene #1023: 'IFNAR1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
IFNAR1 MUTATED 1 0 2 0 1 0 1 1 1
IFNAR1 WILD-TYPE 39 62 26 80 68 48 42 27 73
'MAP4K4 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00557 (Fisher's exact test), Q value = 0.068

Table S10952.  Gene #1024: 'MAP4K4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
MAP4K4 MUTATED 2 0 0 4
MAP4K4 WILD-TYPE 44 58 64 39

Figure S2961.  Get High-res Image Gene #1024: 'MAP4K4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'MAP4K4 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0156 (Fisher's exact test), Q value = 0.12

Table S10953.  Gene #1024: 'MAP4K4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
MAP4K4 MUTATED 4 0 2
MAP4K4 WILD-TYPE 47 83 75

Figure S2962.  Get High-res Image Gene #1024: 'MAP4K4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'MAP4K4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0015 (Fisher's exact test), Q value = 0.032

Table S10954.  Gene #1024: 'MAP4K4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
MAP4K4 MUTATED 15 1 4 1
MAP4K4 WILD-TYPE 163 182 97 19

Figure S2963.  Get High-res Image Gene #1024: 'MAP4K4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'MAP4K4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0675 (Fisher's exact test), Q value = 0.28

Table S10955.  Gene #1024: 'MAP4K4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
MAP4K4 MUTATED 8 1 6
MAP4K4 WILD-TYPE 79 79 94
'MAP4K4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.073 (Fisher's exact test), Q value = 0.29

Table S10956.  Gene #1024: 'MAP4K4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
MAP4K4 MUTATED 6 3 9
MAP4K4 WILD-TYPE 83 157 129
'MAP4K4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.043 (Fisher's exact test), Q value = 0.22

Table S10957.  Gene #1024: 'MAP4K4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
MAP4K4 MUTATED 10 2 6
MAP4K4 WILD-TYPE 172 131 66

Figure S2964.  Get High-res Image Gene #1024: 'MAP4K4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'MAP4K4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.095 (Fisher's exact test), Q value = 0.34

Table S10958.  Gene #1024: 'MAP4K4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
MAP4K4 MUTATED 2 5 8 6
MAP4K4 WILD-TYPE 110 91 84 180
'MAP4K4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00135 (Fisher's exact test), Q value = 0.03

Table S10959.  Gene #1024: 'MAP4K4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
MAP4K4 MUTATED 1 3 7 2 3 0 5
MAP4K4 WILD-TYPE 59 47 42 38 60 125 94

Figure S2965.  Get High-res Image Gene #1024: 'MAP4K4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'MAP4K4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.101 (Fisher's exact test), Q value = 0.35

Table S10960.  Gene #1024: 'MAP4K4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
MAP4K4 MUTATED 9 4 0 7
MAP4K4 WILD-TYPE 121 74 68 189
'MAP4K4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00638 (Fisher's exact test), Q value = 0.073

Table S10961.  Gene #1024: 'MAP4K4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
MAP4K4 MUTATED 4 4 2 2 7 0 0 1 0
MAP4K4 WILD-TYPE 36 58 26 78 62 48 43 27 74

Figure S2966.  Get High-res Image Gene #1024: 'MAP4K4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'MAP4K4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.872 (Fisher's exact test), Q value = 1

Table S10962.  Gene #1024: 'MAP4K4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
MAP4K4 MUTATED 1 1 0 1
MAP4K4 WILD-TYPE 32 30 27 18
'MAP4K4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.84 (Fisher's exact test), Q value = 1

Table S10963.  Gene #1024: 'MAP4K4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
MAP4K4 MUTATED 2 0 0 1
MAP4K4 WILD-TYPE 52 10 24 21
'CSNK2A2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.549 (Fisher's exact test), Q value = 0.87

Table S10964.  Gene #1025: 'CSNK2A2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
CSNK2A2 MUTATED 4 3 0 0
CSNK2A2 WILD-TYPE 174 180 101 20
'CSNK2A2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.384 (Fisher's exact test), Q value = 0.71

Table S10965.  Gene #1025: 'CSNK2A2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
CSNK2A2 MUTATED 1 1 4
CSNK2A2 WILD-TYPE 86 79 96
'CSNK2A2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.876 (Fisher's exact test), Q value = 1

Table S10966.  Gene #1025: 'CSNK2A2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
CSNK2A2 MUTATED 1 2 3
CSNK2A2 WILD-TYPE 88 158 135
'CSNK2A2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.666 (Fisher's exact test), Q value = 0.95

Table S10967.  Gene #1025: 'CSNK2A2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
CSNK2A2 MUTATED 4 2 0
CSNK2A2 WILD-TYPE 178 131 72
'CSNK2A2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0574 (Fisher's exact test), Q value = 0.26

Table S10968.  Gene #1025: 'CSNK2A2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
CSNK2A2 MUTATED 2 3 2 0
CSNK2A2 WILD-TYPE 110 93 90 186
'CSNK2A2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0355 (Fisher's exact test), Q value = 0.2

Table S10969.  Gene #1025: 'CSNK2A2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
CSNK2A2 MUTATED 0 2 3 0 1 1 0
CSNK2A2 WILD-TYPE 60 48 46 40 62 124 99

Figure S2967.  Get High-res Image Gene #1025: 'CSNK2A2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CSNK2A2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.863 (Fisher's exact test), Q value = 1

Table S10970.  Gene #1025: 'CSNK2A2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
CSNK2A2 MUTATED 3 1 1 2
CSNK2A2 WILD-TYPE 127 77 67 194
'CSNK2A2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.409 (Fisher's exact test), Q value = 0.74

Table S10971.  Gene #1025: 'CSNK2A2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
CSNK2A2 MUTATED 1 3 0 1 2 0 0 0 0
CSNK2A2 WILD-TYPE 39 59 28 79 67 48 43 28 74
'CBX3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.275 (Fisher's exact test), Q value = 0.6

Table S10972.  Gene #1026: 'CBX3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
CBX3 MUTATED 2 0 1 0
CBX3 WILD-TYPE 44 58 63 43
'CBX3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.185 (Fisher's exact test), Q value = 0.49

Table S10973.  Gene #1026: 'CBX3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
CBX3 MUTATED 2 0 1
CBX3 WILD-TYPE 49 83 76
'CBX3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.106 (Fisher's exact test), Q value = 0.36

Table S10974.  Gene #1026: 'CBX3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
CBX3 MUTATED 6 1 0 0
CBX3 WILD-TYPE 172 182 101 20
'CBX3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0379 (Fisher's exact test), Q value = 0.2

Table S10975.  Gene #1026: 'CBX3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
CBX3 MUTATED 0 0 4
CBX3 WILD-TYPE 87 80 96

Figure S2968.  Get High-res Image Gene #1026: 'CBX3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'CBX3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.24 (Fisher's exact test), Q value = 0.56

Table S10976.  Gene #1026: 'CBX3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
CBX3 MUTATED 0 2 4
CBX3 WILD-TYPE 89 158 134
'CBX3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.581 (Fisher's exact test), Q value = 0.89

Table S10977.  Gene #1026: 'CBX3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
CBX3 MUTATED 3 3 0
CBX3 WILD-TYPE 179 130 72
'CBX3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0509 (Fisher's exact test), Q value = 0.24

Table S10978.  Gene #1026: 'CBX3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
CBX3 MUTATED 0 4 0 3
CBX3 WILD-TYPE 112 92 92 183
'CBX3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.153 (Fisher's exact test), Q value = 0.44

Table S10979.  Gene #1026: 'CBX3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
CBX3 MUTATED 0 1 3 0 0 1 2
CBX3 WILD-TYPE 60 49 46 40 63 124 97
'CBX3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.502 (Fisher's exact test), Q value = 0.83

Table S10980.  Gene #1026: 'CBX3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
CBX3 MUTATED 3 0 0 4
CBX3 WILD-TYPE 127 78 68 192
'CBX3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.156 (Fisher's exact test), Q value = 0.44

Table S10981.  Gene #1026: 'CBX3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
CBX3 MUTATED 0 0 0 2 4 0 1 0 0
CBX3 WILD-TYPE 40 62 28 78 65 48 42 28 74
'MCART1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00187 (Fisher's exact test), Q value = 0.036

Table S10982.  Gene #1027: 'MCART1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
MCART1 MUTATED 11 0 2 0
MCART1 WILD-TYPE 167 183 99 20

Figure S2969.  Get High-res Image Gene #1027: 'MCART1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'MCART1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0379 (Fisher's exact test), Q value = 0.2

Table S10983.  Gene #1027: 'MCART1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
MCART1 MUTATED 4 0 7
MCART1 WILD-TYPE 83 80 93

Figure S2970.  Get High-res Image Gene #1027: 'MCART1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'MCART1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S10984.  Gene #1027: 'MCART1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
MCART1 MUTATED 2 4 4
MCART1 WILD-TYPE 87 156 134
'MCART1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0805 (Fisher's exact test), Q value = 0.31

Table S10985.  Gene #1027: 'MCART1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
MCART1 MUTATED 2 4 4
MCART1 WILD-TYPE 180 129 68
'MCART1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0147 (Fisher's exact test), Q value = 0.12

Table S10986.  Gene #1027: 'MCART1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
MCART1 MUTATED 1 7 3 2
MCART1 WILD-TYPE 111 89 89 184

Figure S2971.  Get High-res Image Gene #1027: 'MCART1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'MCART1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0759 (Fisher's exact test), Q value = 0.3

Table S10987.  Gene #1027: 'MCART1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
MCART1 MUTATED 1 3 3 1 2 0 3
MCART1 WILD-TYPE 59 47 46 39 61 125 96
'MCART1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.499 (Fisher's exact test), Q value = 0.83

Table S10988.  Gene #1027: 'MCART1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
MCART1 MUTATED 6 1 2 4
MCART1 WILD-TYPE 124 77 66 192
'MCART1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.225 (Fisher's exact test), Q value = 0.54

Table S10989.  Gene #1027: 'MCART1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
MCART1 MUTATED 2 0 1 2 5 0 1 1 1
MCART1 WILD-TYPE 38 62 27 78 64 48 42 27 73
'MCART1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.425 (Fisher's exact test), Q value = 0.75

Table S10990.  Gene #1027: 'MCART1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
MCART1 MUTATED 0 1 2 1
MCART1 WILD-TYPE 33 30 25 18
'MCART1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.322 (Fisher's exact test), Q value = 0.65

Table S10991.  Gene #1027: 'MCART1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
MCART1 MUTATED 1 0 1 2
MCART1 WILD-TYPE 53 10 23 20
'USP28 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.115 (Fisher's exact test), Q value = 0.38

Table S10992.  Gene #1028: 'USP28 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
USP28 MUTATED 5 1 2 4
USP28 WILD-TYPE 41 57 62 39
'USP28 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.135 (Fisher's exact test), Q value = 0.41

Table S10993.  Gene #1028: 'USP28 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
USP28 MUTATED 6 3 3
USP28 WILD-TYPE 45 80 74
'USP28 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0519 (Fisher's exact test), Q value = 0.25

Table S10994.  Gene #1028: 'USP28 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
USP28 MUTATED 17 6 4 0
USP28 WILD-TYPE 161 177 97 20
'USP28 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.4 (Fisher's exact test), Q value = 0.73

Table S10995.  Gene #1028: 'USP28 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
USP28 MUTATED 3 6 8
USP28 WILD-TYPE 84 74 92
'USP28 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0412 (Fisher's exact test), Q value = 0.21

Table S10996.  Gene #1028: 'USP28 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
USP28 MUTATED 1 9 12
USP28 WILD-TYPE 88 151 126

Figure S2972.  Get High-res Image Gene #1028: 'USP28 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'USP28 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.809 (Fisher's exact test), Q value = 1

Table S10997.  Gene #1028: 'USP28 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
USP28 MUTATED 10 9 3
USP28 WILD-TYPE 172 124 69
'USP28 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.648 (Fisher's exact test), Q value = 0.93

Table S10998.  Gene #1028: 'USP28 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
USP28 MUTATED 6 7 3 12
USP28 WILD-TYPE 106 89 89 174
'USP28 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0261 (Fisher's exact test), Q value = 0.16

Table S10999.  Gene #1028: 'USP28 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
USP28 MUTATED 4 4 4 0 3 2 11
USP28 WILD-TYPE 56 46 45 40 60 123 88

Figure S2973.  Get High-res Image Gene #1028: 'USP28 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'USP28 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.553 (Fisher's exact test), Q value = 0.87

Table S11000.  Gene #1028: 'USP28 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
USP28 MUTATED 7 2 4 14
USP28 WILD-TYPE 123 76 64 182
'USP28 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.261 (Fisher's exact test), Q value = 0.58

Table S11001.  Gene #1028: 'USP28 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
USP28 MUTATED 1 3 2 6 9 2 2 0 2
USP28 WILD-TYPE 39 59 26 74 60 46 41 28 72
'USP28 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.867 (Fisher's exact test), Q value = 1

Table S11002.  Gene #1028: 'USP28 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
USP28 MUTATED 1 1 2 1
USP28 WILD-TYPE 32 30 25 18
'USP28 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0389 (Fisher's exact test), Q value = 0.21

Table S11003.  Gene #1028: 'USP28 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
USP28 MUTATED 1 2 0 2
USP28 WILD-TYPE 53 8 24 20

Figure S2974.  Get High-res Image Gene #1028: 'USP28 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

'ZBP1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0713 (Fisher's exact test), Q value = 0.29

Table S11004.  Gene #1029: 'ZBP1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ZBP1 MUTATED 3 0 1 3
ZBP1 WILD-TYPE 43 58 63 40
'ZBP1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.548 (Fisher's exact test), Q value = 0.87

Table S11005.  Gene #1029: 'ZBP1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ZBP1 MUTATED 3 2 2
ZBP1 WILD-TYPE 48 81 75
'ZBP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0557 (Fisher's exact test), Q value = 0.26

Table S11006.  Gene #1029: 'ZBP1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ZBP1 MUTATED 9 2 1 1
ZBP1 WILD-TYPE 169 181 100 19
'ZBP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.325 (Fisher's exact test), Q value = 0.65

Table S11007.  Gene #1029: 'ZBP1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ZBP1 MUTATED 4 1 1
ZBP1 WILD-TYPE 83 79 99
'ZBP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.911 (Fisher's exact test), Q value = 1

Table S11008.  Gene #1029: 'ZBP1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ZBP1 MUTATED 2 3 4
ZBP1 WILD-TYPE 87 157 134
'ZBP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.742 (Fisher's exact test), Q value = 1

Table S11009.  Gene #1029: 'ZBP1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ZBP1 MUTATED 5 2 2
ZBP1 WILD-TYPE 177 131 70
'ZBP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0567 (Fisher's exact test), Q value = 0.26

Table S11010.  Gene #1029: 'ZBP1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ZBP1 MUTATED 0 4 1 8
ZBP1 WILD-TYPE 112 92 91 178
'ZBP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.265 (Fisher's exact test), Q value = 0.59

Table S11011.  Gene #1029: 'ZBP1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ZBP1 MUTATED 0 1 2 2 0 3 5
ZBP1 WILD-TYPE 60 49 47 38 63 122 94
'ZBP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.32 (Fisher's exact test), Q value = 0.65

Table S11012.  Gene #1029: 'ZBP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ZBP1 MUTATED 3 1 0 8
ZBP1 WILD-TYPE 127 77 68 188
'ZBP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0126 (Fisher's exact test), Q value = 0.11

Table S11013.  Gene #1029: 'ZBP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ZBP1 MUTATED 0 0 3 1 5 0 2 0 1
ZBP1 WILD-TYPE 40 62 25 79 64 48 41 28 73

Figure S2975.  Get High-res Image Gene #1029: 'ZBP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'ZBP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.357 (Fisher's exact test), Q value = 0.69

Table S11014.  Gene #1029: 'ZBP1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
ZBP1 MUTATED 1 1 0 2
ZBP1 WILD-TYPE 32 30 27 17
'ZBP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.67 (Fisher's exact test), Q value = 0.95

Table S11015.  Gene #1029: 'ZBP1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
ZBP1 MUTATED 2 0 2 0
ZBP1 WILD-TYPE 52 10 22 22
'MYLK4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0116 (Fisher's exact test), Q value = 0.11

Table S11016.  Gene #1030: 'MYLK4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
MYLK4 MUTATED 5 5 0 3
MYLK4 WILD-TYPE 173 178 101 17

Figure S2976.  Get High-res Image Gene #1030: 'MYLK4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'MYLK4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.592 (Fisher's exact test), Q value = 0.9

Table S11017.  Gene #1030: 'MYLK4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
MYLK4 MUTATED 5 5 3
MYLK4 WILD-TYPE 82 75 97
'MYLK4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.876 (Fisher's exact test), Q value = 1

Table S11018.  Gene #1030: 'MYLK4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
MYLK4 MUTATED 2 6 5
MYLK4 WILD-TYPE 87 154 133
'MYLK4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.454 (Fisher's exact test), Q value = 0.78

Table S11019.  Gene #1030: 'MYLK4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
MYLK4 MUTATED 6 3 4
MYLK4 WILD-TYPE 176 130 68
'MYLK4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.21 (Fisher's exact test), Q value = 0.52

Table S11020.  Gene #1030: 'MYLK4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
MYLK4 MUTATED 5 3 4 2
MYLK4 WILD-TYPE 107 93 88 184
'MYLK4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0164 (Fisher's exact test), Q value = 0.13

Table S11021.  Gene #1030: 'MYLK4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
MYLK4 MUTATED 1 2 2 4 3 0 2
MYLK4 WILD-TYPE 59 48 47 36 60 125 97

Figure S2977.  Get High-res Image Gene #1030: 'MYLK4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'MYLK4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0534 (Fisher's exact test), Q value = 0.25

Table S11022.  Gene #1030: 'MYLK4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
MYLK4 MUTATED 7 4 1 2
MYLK4 WILD-TYPE 123 74 67 194
'MYLK4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.177 (Fisher's exact test), Q value = 0.48

Table S11023.  Gene #1030: 'MYLK4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
MYLK4 MUTATED 4 4 1 1 1 1 1 0 1
MYLK4 WILD-TYPE 36 58 27 79 68 47 42 28 73
'MYLK4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.492 (Fisher's exact test), Q value = 0.82

Table S11024.  Gene #1030: 'MYLK4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
MYLK4 MUTATED 3 1 0 1
MYLK4 WILD-TYPE 30 30 27 18
'MYLK4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.472 (Fisher's exact test), Q value = 0.8

Table S11025.  Gene #1030: 'MYLK4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
MYLK4 MUTATED 3 0 0 2
MYLK4 WILD-TYPE 51 10 24 20
'FER MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.136 (Fisher's exact test), Q value = 0.41

Table S11026.  Gene #1031: 'FER MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
FER MUTATED 3 0 1 2
FER WILD-TYPE 43 58 63 41
'FER MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.659 (Fisher's exact test), Q value = 0.95

Table S11027.  Gene #1031: 'FER MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
FER MUTATED 2 3 1
FER WILD-TYPE 49 80 76
'FER MUTATION STATUS' versus 'CN_CNMF'

P value = 0.044 (Fisher's exact test), Q value = 0.22

Table S11028.  Gene #1031: 'FER MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
FER MUTATED 11 2 3 1
FER WILD-TYPE 167 181 98 19

Figure S2978.  Get High-res Image Gene #1031: 'FER MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'FER MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S11029.  Gene #1031: 'FER MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
FER MUTATED 4 3 4
FER WILD-TYPE 83 77 96
'FER MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0126 (Fisher's exact test), Q value = 0.11

Table S11030.  Gene #1031: 'FER MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
FER MUTATED 0 5 10
FER WILD-TYPE 89 155 128

Figure S2979.  Get High-res Image Gene #1031: 'FER MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'FER MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.941 (Fisher's exact test), Q value = 1

Table S11031.  Gene #1031: 'FER MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
FER MUTATED 8 5 2
FER WILD-TYPE 174 128 70
'FER MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.883 (Fisher's exact test), Q value = 1

Table S11032.  Gene #1031: 'FER MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
FER MUTATED 3 4 4 6
FER WILD-TYPE 109 92 88 180
'FER MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0178 (Fisher's exact test), Q value = 0.13

Table S11033.  Gene #1031: 'FER MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
FER MUTATED 3 4 5 0 0 2 3
FER WILD-TYPE 57 46 44 40 63 123 96

Figure S2980.  Get High-res Image Gene #1031: 'FER MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'FER MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.59 (Fisher's exact test), Q value = 0.89

Table S11034.  Gene #1031: 'FER MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
FER MUTATED 7 2 1 7
FER WILD-TYPE 123 76 67 189
'FER MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.307 (Fisher's exact test), Q value = 0.64

Table S11035.  Gene #1031: 'FER MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
FER MUTATED 0 3 3 3 3 1 3 0 1
FER WILD-TYPE 40 59 25 77 66 47 40 28 73
'FER MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.303 (Fisher's exact test), Q value = 0.63

Table S11036.  Gene #1031: 'FER MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
FER MUTATED 2 0 1 2
FER WILD-TYPE 31 31 26 17
'FER MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.757 (Fisher's exact test), Q value = 1

Table S11037.  Gene #1031: 'FER MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
FER MUTATED 4 0 1 0
FER WILD-TYPE 50 10 23 22
'GNA11 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.107 (Fisher's exact test), Q value = 0.36

Table S11038.  Gene #1032: 'GNA11 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
GNA11 MUTATED 6 1 0 0
GNA11 WILD-TYPE 172 182 101 20
'GNA11 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.139 (Fisher's exact test), Q value = 0.42

Table S11039.  Gene #1032: 'GNA11 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
GNA11 MUTATED 4 0 2
GNA11 WILD-TYPE 83 80 98
'GNA11 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.329 (Fisher's exact test), Q value = 0.66

Table S11040.  Gene #1032: 'GNA11 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
GNA11 MUTATED 1 1 4
GNA11 WILD-TYPE 88 159 134
'GNA11 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S11041.  Gene #1032: 'GNA11 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
GNA11 MUTATED 3 2 1
GNA11 WILD-TYPE 179 131 71
'GNA11 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0215 (Fisher's exact test), Q value = 0.15

Table S11042.  Gene #1032: 'GNA11 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
GNA11 MUTATED 1 3 3 0
GNA11 WILD-TYPE 111 93 89 186

Figure S2981.  Get High-res Image Gene #1032: 'GNA11 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'GNA11 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0127 (Fisher's exact test), Q value = 0.11

Table S11043.  Gene #1032: 'GNA11 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
GNA11 MUTATED 1 3 2 0 1 0 0
GNA11 WILD-TYPE 59 47 47 40 62 125 99

Figure S2982.  Get High-res Image Gene #1032: 'GNA11 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'GNA11 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.479 (Fisher's exact test), Q value = 0.81

Table S11044.  Gene #1032: 'GNA11 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
GNA11 MUTATED 3 2 0 2
GNA11 WILD-TYPE 127 76 68 194
'GNA11 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.41 (Fisher's exact test), Q value = 0.74

Table S11045.  Gene #1032: 'GNA11 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
GNA11 MUTATED 1 3 0 1 2 0 0 0 0
GNA11 WILD-TYPE 39 59 28 79 67 48 43 28 74
'GNA11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.871 (Fisher's exact test), Q value = 1

Table S11046.  Gene #1032: 'GNA11 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
GNA11 MUTATED 1 1 0 1
GNA11 WILD-TYPE 32 30 27 18
'GNA11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.564 (Fisher's exact test), Q value = 0.87

Table S11047.  Gene #1032: 'GNA11 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
GNA11 MUTATED 3 0 0 0
GNA11 WILD-TYPE 51 10 24 22
'CHRNA1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S11048.  Gene #1033: 'CHRNA1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
CHRNA1 MUTATED 1 1 1 1
CHRNA1 WILD-TYPE 45 57 63 42
'CHRNA1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S11049.  Gene #1033: 'CHRNA1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
CHRNA1 MUTATED 1 2 1
CHRNA1 WILD-TYPE 50 81 76
'CHRNA1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.717 (Fisher's exact test), Q value = 0.99

Table S11050.  Gene #1033: 'CHRNA1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
CHRNA1 MUTATED 6 5 1 0
CHRNA1 WILD-TYPE 172 178 100 20
'CHRNA1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.547 (Fisher's exact test), Q value = 0.87

Table S11051.  Gene #1033: 'CHRNA1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
CHRNA1 MUTATED 2 4 2
CHRNA1 WILD-TYPE 85 76 98
'CHRNA1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.174 (Fisher's exact test), Q value = 0.47

Table S11052.  Gene #1033: 'CHRNA1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
CHRNA1 MUTATED 0 6 3
CHRNA1 WILD-TYPE 89 154 135
'CHRNA1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.496 (Fisher's exact test), Q value = 0.82

Table S11053.  Gene #1033: 'CHRNA1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
CHRNA1 MUTATED 3 5 1
CHRNA1 WILD-TYPE 179 128 71
'CHRNA1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.451 (Fisher's exact test), Q value = 0.78

Table S11054.  Gene #1033: 'CHRNA1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
CHRNA1 MUTATED 5 1 2 4
CHRNA1 WILD-TYPE 107 95 90 182
'CHRNA1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.247 (Fisher's exact test), Q value = 0.57

Table S11055.  Gene #1033: 'CHRNA1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
CHRNA1 MUTATED 4 0 2 1 2 2 1
CHRNA1 WILD-TYPE 56 50 47 39 61 123 98
'CHRNA1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.579 (Fisher's exact test), Q value = 0.88

Table S11056.  Gene #1033: 'CHRNA1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
CHRNA1 MUTATED 5 2 2 3
CHRNA1 WILD-TYPE 125 76 66 193
'CHRNA1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.17 (Fisher's exact test), Q value = 0.47

Table S11057.  Gene #1033: 'CHRNA1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
CHRNA1 MUTATED 4 2 0 2 3 0 0 0 1
CHRNA1 WILD-TYPE 36 60 28 78 66 48 43 28 73
'CHRNA1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.485 (Fisher's exact test), Q value = 0.81

Table S11058.  Gene #1033: 'CHRNA1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
CHRNA1 MUTATED 2 0 1 0
CHRNA1 WILD-TYPE 31 31 26 19
'CHRNA1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.38 (Fisher's exact test), Q value = 0.71

Table S11059.  Gene #1033: 'CHRNA1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
CHRNA1 MUTATED 2 1 0 0
CHRNA1 WILD-TYPE 52 9 24 22
'SLC16A1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.121 (Fisher's exact test), Q value = 0.39

Table S11060.  Gene #1034: 'SLC16A1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
SLC16A1 MUTATED 2 0 0 1
SLC16A1 WILD-TYPE 44 58 64 42
'SLC16A1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.185 (Fisher's exact test), Q value = 0.49

Table S11061.  Gene #1034: 'SLC16A1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
SLC16A1 MUTATED 2 0 1
SLC16A1 WILD-TYPE 49 83 76
'SLC16A1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.276 (Fisher's exact test), Q value = 0.6

Table S11062.  Gene #1034: 'SLC16A1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
SLC16A1 MUTATED 7 2 1 0
SLC16A1 WILD-TYPE 171 181 100 20
'SLC16A1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.126 (Fisher's exact test), Q value = 0.39

Table S11063.  Gene #1034: 'SLC16A1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
SLC16A1 MUTATED 2 0 5
SLC16A1 WILD-TYPE 85 80 95
'SLC16A1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.816 (Fisher's exact test), Q value = 1

Table S11064.  Gene #1034: 'SLC16A1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
SLC16A1 MUTATED 2 4 2
SLC16A1 WILD-TYPE 87 156 136
'SLC16A1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.723 (Fisher's exact test), Q value = 0.99

Table S11065.  Gene #1034: 'SLC16A1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
SLC16A1 MUTATED 3 3 2
SLC16A1 WILD-TYPE 179 130 70
'SLC16A1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0943 (Fisher's exact test), Q value = 0.34

Table S11066.  Gene #1034: 'SLC16A1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
SLC16A1 MUTATED 0 4 3 3
SLC16A1 WILD-TYPE 112 92 89 183
'SLC16A1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.228 (Fisher's exact test), Q value = 0.55

Table S11067.  Gene #1034: 'SLC16A1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
SLC16A1 MUTATED 0 1 3 0 2 1 3
SLC16A1 WILD-TYPE 60 49 46 40 61 124 96
'SLC16A1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.636 (Fisher's exact test), Q value = 0.93

Table S11068.  Gene #1034: 'SLC16A1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
SLC16A1 MUTATED 4 2 0 4
SLC16A1 WILD-TYPE 126 76 68 192
'SLC16A1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.145 (Fisher's exact test), Q value = 0.42

Table S11069.  Gene #1034: 'SLC16A1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
SLC16A1 MUTATED 1 3 1 0 4 0 0 0 1
SLC16A1 WILD-TYPE 39 59 27 80 65 48 43 28 73
'TRAM1L1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0738 (Fisher's exact test), Q value = 0.29

Table S11070.  Gene #1035: 'TRAM1L1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
TRAM1L1 MUTATED 2 0 0 2
TRAM1L1 WILD-TYPE 44 58 64 41
'TRAM1L1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0618 (Fisher's exact test), Q value = 0.27

Table S11071.  Gene #1035: 'TRAM1L1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
TRAM1L1 MUTATED 3 1 0
TRAM1L1 WILD-TYPE 48 82 77
'TRAM1L1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.36 (Fisher's exact test), Q value = 0.69

Table S11072.  Gene #1035: 'TRAM1L1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
TRAM1L1 MUTATED 8 3 2 0
TRAM1L1 WILD-TYPE 170 180 99 20
'TRAM1L1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.402 (Fisher's exact test), Q value = 0.73

Table S11073.  Gene #1035: 'TRAM1L1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
TRAM1L1 MUTATED 2 2 6
TRAM1L1 WILD-TYPE 85 78 94
'TRAM1L1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.692 (Fisher's exact test), Q value = 0.97

Table S11074.  Gene #1035: 'TRAM1L1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
TRAM1L1 MUTATED 2 7 5
TRAM1L1 WILD-TYPE 87 153 133
'TRAM1L1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.878 (Fisher's exact test), Q value = 1

Table S11075.  Gene #1035: 'TRAM1L1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
TRAM1L1 MUTATED 7 4 3
TRAM1L1 WILD-TYPE 175 129 69
'TRAM1L1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.777 (Fisher's exact test), Q value = 1

Table S11076.  Gene #1035: 'TRAM1L1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
TRAM1L1 MUTATED 2 4 3 5
TRAM1L1 WILD-TYPE 110 92 89 181
'TRAM1L1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0259 (Fisher's exact test), Q value = 0.16

Table S11077.  Gene #1035: 'TRAM1L1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
TRAM1L1 MUTATED 0 0 4 1 4 1 4
TRAM1L1 WILD-TYPE 60 50 45 39 59 124 95

Figure S2983.  Get High-res Image Gene #1035: 'TRAM1L1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'TRAM1L1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.764 (Fisher's exact test), Q value = 1

Table S11078.  Gene #1035: 'TRAM1L1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
TRAM1L1 MUTATED 5 2 2 4
TRAM1L1 WILD-TYPE 125 76 66 192
'TRAM1L1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.207 (Fisher's exact test), Q value = 0.51

Table S11079.  Gene #1035: 'TRAM1L1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
TRAM1L1 MUTATED 2 4 1 1 4 0 0 0 1
TRAM1L1 WILD-TYPE 38 58 27 79 65 48 43 28 73
'TRAM1L1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S11080.  Gene #1035: 'TRAM1L1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
TRAM1L1 MUTATED 1 1 1 1
TRAM1L1 WILD-TYPE 32 30 26 18
'TRAM1L1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.063 (Fisher's exact test), Q value = 0.27

Table S11081.  Gene #1035: 'TRAM1L1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
TRAM1L1 MUTATED 1 2 1 0
TRAM1L1 WILD-TYPE 53 8 23 22
'MRPL13 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.207 (Fisher's exact test), Q value = 0.51

Table S11082.  Gene #1036: 'MRPL13 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
MRPL13 MUTATED 6 1 1 0
MRPL13 WILD-TYPE 172 182 100 20
'MRPL13 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.326 (Fisher's exact test), Q value = 0.66

Table S11083.  Gene #1036: 'MRPL13 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
MRPL13 MUTATED 4 1 1
MRPL13 WILD-TYPE 83 79 99
'MRPL13 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0785 (Fisher's exact test), Q value = 0.3

Table S11084.  Gene #1036: 'MRPL13 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
MRPL13 MUTATED 0 1 5
MRPL13 WILD-TYPE 89 159 133
'MRPL13 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.76 (Fisher's exact test), Q value = 1

Table S11085.  Gene #1036: 'MRPL13 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
MRPL13 MUTATED 4 1 1
MRPL13 WILD-TYPE 178 132 71
'MRPL13 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.594 (Fisher's exact test), Q value = 0.9

Table S11086.  Gene #1036: 'MRPL13 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
MRPL13 MUTATED 2 1 3 2
MRPL13 WILD-TYPE 110 95 89 184
'MRPL13 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.148 (Fisher's exact test), Q value = 0.43

Table S11087.  Gene #1036: 'MRPL13 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
MRPL13 MUTATED 2 1 2 1 0 0 2
MRPL13 WILD-TYPE 58 49 47 39 63 125 97
'MRPL13 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.846 (Fisher's exact test), Q value = 1

Table S11088.  Gene #1036: 'MRPL13 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
MRPL13 MUTATED 3 1 0 4
MRPL13 WILD-TYPE 127 77 68 192
'MRPL13 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.895 (Fisher's exact test), Q value = 1

Table S11089.  Gene #1036: 'MRPL13 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
MRPL13 MUTATED 0 2 1 1 2 1 0 0 1
MRPL13 WILD-TYPE 40 60 27 79 67 47 43 28 73
'MARVELD2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00464 (Fisher's exact test), Q value = 0.062

Table S11090.  Gene #1037: 'MARVELD2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
MARVELD2 MUTATED 9 0 1 0
MARVELD2 WILD-TYPE 169 183 100 20

Figure S2984.  Get High-res Image Gene #1037: 'MARVELD2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'MARVELD2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.128 (Fisher's exact test), Q value = 0.4

Table S11091.  Gene #1037: 'MARVELD2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
MARVELD2 MUTATED 6 1 2
MARVELD2 WILD-TYPE 81 79 98
'MARVELD2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.267 (Fisher's exact test), Q value = 0.59

Table S11092.  Gene #1037: 'MARVELD2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
MARVELD2 MUTATED 2 2 6
MARVELD2 WILD-TYPE 87 158 132
'MARVELD2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.695 (Fisher's exact test), Q value = 0.97

Table S11093.  Gene #1037: 'MARVELD2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
MARVELD2 MUTATED 6 2 2
MARVELD2 WILD-TYPE 176 131 70
'MARVELD2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0217 (Fisher's exact test), Q value = 0.15

Table S11094.  Gene #1037: 'MARVELD2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
MARVELD2 MUTATED 0 6 2 3
MARVELD2 WILD-TYPE 112 90 90 183

Figure S2985.  Get High-res Image Gene #1037: 'MARVELD2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'MARVELD2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00019 (Fisher's exact test), Q value = 0.008

Table S11095.  Gene #1037: 'MARVELD2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
MARVELD2 MUTATED 0 1 7 0 0 1 2
MARVELD2 WILD-TYPE 60 49 42 40 63 124 97

Figure S2986.  Get High-res Image Gene #1037: 'MARVELD2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'MARVELD2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.162 (Fisher's exact test), Q value = 0.46

Table S11096.  Gene #1037: 'MARVELD2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
MARVELD2 MUTATED 6 1 0 3
MARVELD2 WILD-TYPE 124 77 68 193
'MARVELD2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.376 (Fisher's exact test), Q value = 0.71

Table S11097.  Gene #1037: 'MARVELD2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
MARVELD2 MUTATED 0 3 0 2 4 0 0 0 1
MARVELD2 WILD-TYPE 40 59 28 78 65 48 43 28 73
'PAX6 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0272 (Fisher's exact test), Q value = 0.17

Table S11098.  Gene #1038: 'PAX6 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
PAX6 MUTATED 3 0 0 2
PAX6 WILD-TYPE 43 58 64 41

Figure S2987.  Get High-res Image Gene #1038: 'PAX6 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'PAX6 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00644 (Fisher's exact test), Q value = 0.074

Table S11099.  Gene #1038: 'PAX6 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
PAX6 MUTATED 4 0 1
PAX6 WILD-TYPE 47 83 76

Figure S2988.  Get High-res Image Gene #1038: 'PAX6 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'PAX6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00655 (Fisher's exact test), Q value = 0.074

Table S11100.  Gene #1038: 'PAX6 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
PAX6 MUTATED 11 2 1 2
PAX6 WILD-TYPE 167 181 100 18

Figure S2989.  Get High-res Image Gene #1038: 'PAX6 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'PAX6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0475 (Fisher's exact test), Q value = 0.23

Table S11101.  Gene #1038: 'PAX6 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
PAX6 MUTATED 5 0 6
PAX6 WILD-TYPE 82 80 94

Figure S2990.  Get High-res Image Gene #1038: 'PAX6 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'PAX6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.211 (Fisher's exact test), Q value = 0.52

Table S11102.  Gene #1038: 'PAX6 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
PAX6 MUTATED 1 6 8
PAX6 WILD-TYPE 88 154 130
'PAX6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.574 (Fisher's exact test), Q value = 0.88

Table S11103.  Gene #1038: 'PAX6 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
PAX6 MUTATED 8 6 1
PAX6 WILD-TYPE 174 127 71
'PAX6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0868 (Fisher's exact test), Q value = 0.32

Table S11104.  Gene #1038: 'PAX6 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
PAX6 MUTATED 1 7 3 5
PAX6 WILD-TYPE 111 89 89 181
'PAX6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.028 (Fisher's exact test), Q value = 0.17

Table S11105.  Gene #1038: 'PAX6 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
PAX6 MUTATED 1 2 4 1 2 0 6
PAX6 WILD-TYPE 59 48 45 39 61 125 93

Figure S2991.  Get High-res Image Gene #1038: 'PAX6 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'PAX6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.437 (Fisher's exact test), Q value = 0.76

Table S11106.  Gene #1038: 'PAX6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
PAX6 MUTATED 5 3 0 7
PAX6 WILD-TYPE 125 75 68 189
'PAX6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0148 (Fisher's exact test), Q value = 0.12

Table S11107.  Gene #1038: 'PAX6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
PAX6 MUTATED 1 3 1 1 8 0 0 0 1
PAX6 WILD-TYPE 39 59 27 79 61 48 43 28 73

Figure S2992.  Get High-res Image Gene #1038: 'PAX6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'PAX6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.783 (Fisher's exact test), Q value = 1

Table S11108.  Gene #1038: 'PAX6 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
PAX6 MUTATED 1 0 1 1
PAX6 WILD-TYPE 32 31 26 18
'PAX6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S11109.  Gene #1038: 'PAX6 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
PAX6 MUTATED 2 0 1 0
PAX6 WILD-TYPE 52 10 23 22
'ZNF547 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.249 (Fisher's exact test), Q value = 0.57

Table S11110.  Gene #1039: 'ZNF547 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ZNF547 MUTATED 6 2 1 1
ZNF547 WILD-TYPE 172 181 100 19
'ZNF547 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S11111.  Gene #1039: 'ZNF547 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ZNF547 MUTATED 3 2 3
ZNF547 WILD-TYPE 84 78 97
'ZNF547 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.213 (Fisher's exact test), Q value = 0.52

Table S11112.  Gene #1039: 'ZNF547 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ZNF547 MUTATED 0 4 5
ZNF547 WILD-TYPE 89 156 133
'ZNF547 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.823 (Fisher's exact test), Q value = 1

Table S11113.  Gene #1039: 'ZNF547 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ZNF547 MUTATED 4 4 1
ZNF547 WILD-TYPE 178 129 71
'ZNF547 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.533 (Fisher's exact test), Q value = 0.85

Table S11114.  Gene #1039: 'ZNF547 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ZNF547 MUTATED 3 2 3 2
ZNF547 WILD-TYPE 109 94 89 184
'ZNF547 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0274 (Fisher's exact test), Q value = 0.17

Table S11115.  Gene #1039: 'ZNF547 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ZNF547 MUTATED 3 0 3 1 2 0 1
ZNF547 WILD-TYPE 57 50 46 39 61 125 98

Figure S2993.  Get High-res Image Gene #1039: 'ZNF547 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ZNF547 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.854 (Fisher's exact test), Q value = 1

Table S11116.  Gene #1039: 'ZNF547 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ZNF547 MUTATED 2 2 2 4
ZNF547 WILD-TYPE 128 76 66 192
'ZNF547 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.105 (Fisher's exact test), Q value = 0.36

Table S11117.  Gene #1039: 'ZNF547 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ZNF547 MUTATED 1 3 1 0 3 0 2 0 0
ZNF547 WILD-TYPE 39 59 27 80 66 48 41 28 74
'ADCY9 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S11118.  Gene #1040: 'ADCY9 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ADCY9 MUTATED 1 1 1 1
ADCY9 WILD-TYPE 45 57 63 42
'ADCY9 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.834 (Fisher's exact test), Q value = 1

Table S11119.  Gene #1040: 'ADCY9 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ADCY9 MUTATED 1 1 2
ADCY9 WILD-TYPE 50 82 75
'ADCY9 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.167 (Fisher's exact test), Q value = 0.46

Table S11120.  Gene #1040: 'ADCY9 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ADCY9 MUTATED 12 4 4 0
ADCY9 WILD-TYPE 166 179 97 20
'ADCY9 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.712 (Fisher's exact test), Q value = 0.98

Table S11121.  Gene #1040: 'ADCY9 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ADCY9 MUTATED 6 3 6
ADCY9 WILD-TYPE 81 77 94
'ADCY9 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.458 (Fisher's exact test), Q value = 0.79

Table S11122.  Gene #1040: 'ADCY9 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ADCY9 MUTATED 2 7 8
ADCY9 WILD-TYPE 87 153 130
'ADCY9 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.807 (Fisher's exact test), Q value = 1

Table S11123.  Gene #1040: 'ADCY9 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ADCY9 MUTATED 8 5 4
ADCY9 WILD-TYPE 174 128 68
'ADCY9 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.214 (Fisher's exact test), Q value = 0.52

Table S11124.  Gene #1040: 'ADCY9 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ADCY9 MUTATED 3 5 7 5
ADCY9 WILD-TYPE 109 91 85 181
'ADCY9 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0394 (Fisher's exact test), Q value = 0.21

Table S11125.  Gene #1040: 'ADCY9 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ADCY9 MUTATED 2 4 6 2 2 2 2
ADCY9 WILD-TYPE 58 46 43 38 61 123 97

Figure S2994.  Get High-res Image Gene #1040: 'ADCY9 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ADCY9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.618 (Fisher's exact test), Q value = 0.92

Table S11126.  Gene #1040: 'ADCY9 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ADCY9 MUTATED 7 4 1 8
ADCY9 WILD-TYPE 123 74 67 188
'ADCY9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.316 (Fisher's exact test), Q value = 0.64

Table S11127.  Gene #1040: 'ADCY9 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ADCY9 MUTATED 1 4 2 2 7 1 1 0 2
ADCY9 WILD-TYPE 39 58 26 78 62 47 42 28 72
'ADCY9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0862 (Fisher's exact test), Q value = 0.32

Table S11128.  Gene #1040: 'ADCY9 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
ADCY9 MUTATED 1 1 0 3
ADCY9 WILD-TYPE 32 30 27 16
'ADCY9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.82 (Fisher's exact test), Q value = 1

Table S11129.  Gene #1040: 'ADCY9 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
ADCY9 MUTATED 2 0 1 2
ADCY9 WILD-TYPE 52 10 23 20
'AGAP4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.195 (Fisher's exact test), Q value = 0.5

Table S11130.  Gene #1041: 'AGAP4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
AGAP4 MUTATED 1 2 0 1
AGAP4 WILD-TYPE 177 181 101 19
'AGAP4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0186 (Fisher's exact test), Q value = 0.14

Table S11131.  Gene #1041: 'AGAP4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
AGAP4 MUTATED 4 0 0
AGAP4 WILD-TYPE 83 80 100

Figure S2995.  Get High-res Image Gene #1041: 'AGAP4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'AGAP4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.139 (Fisher's exact test), Q value = 0.41

Table S11132.  Gene #1041: 'AGAP4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
AGAP4 MUTATED 1 1 2 0
AGAP4 WILD-TYPE 111 95 90 186
'AGAP4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.128 (Fisher's exact test), Q value = 0.4

Table S11133.  Gene #1041: 'AGAP4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
AGAP4 MUTATED 0 1 1 1 1 0 0
AGAP4 WILD-TYPE 60 49 48 39 62 125 99
'AGAP4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.184 (Fisher's exact test), Q value = 0.48

Table S11134.  Gene #1041: 'AGAP4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
AGAP4 MUTATED 2 1 1 0
AGAP4 WILD-TYPE 128 77 67 196
'AGAP4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.312 (Fisher's exact test), Q value = 0.64

Table S11135.  Gene #1041: 'AGAP4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
AGAP4 MUTATED 0 1 0 1 0 0 2 0 0
AGAP4 WILD-TYPE 40 61 28 79 69 48 41 28 74
'OR11H12 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.874 (Fisher's exact test), Q value = 1

Table S11136.  Gene #1042: 'OR11H12 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
OR11H12 MUTATED 1 3 1 0
OR11H12 WILD-TYPE 177 180 100 20
'OR11H12 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.557 (Fisher's exact test), Q value = 0.87

Table S11137.  Gene #1042: 'OR11H12 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
OR11H12 MUTATED 2 0 2
OR11H12 WILD-TYPE 85 80 98
'OR11H12 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.829 (Fisher's exact test), Q value = 1

Table S11138.  Gene #1042: 'OR11H12 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
OR11H12 MUTATED 1 1 2
OR11H12 WILD-TYPE 88 159 136
'OR11H12 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S11139.  Gene #1042: 'OR11H12 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
OR11H12 MUTATED 2 1 1
OR11H12 WILD-TYPE 180 132 71
'OR11H12 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.605 (Fisher's exact test), Q value = 0.91

Table S11140.  Gene #1042: 'OR11H12 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
OR11H12 MUTATED 1 2 1 1
OR11H12 WILD-TYPE 111 94 91 185
'OR11H12 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.4 (Fisher's exact test), Q value = 0.73

Table S11141.  Gene #1042: 'OR11H12 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
OR11H12 MUTATED 1 1 1 1 0 1 0
OR11H12 WILD-TYPE 59 49 48 39 63 124 99
'OR11H12 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0318 (Fisher's exact test), Q value = 0.18

Table S11142.  Gene #1042: 'OR11H12 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
OR11H12 MUTATED 3 0 2 0
OR11H12 WILD-TYPE 127 78 66 196

Figure S2996.  Get High-res Image Gene #1042: 'OR11H12 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'OR11H12 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0521 (Fisher's exact test), Q value = 0.25

Table S11143.  Gene #1042: 'OR11H12 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
OR11H12 MUTATED 2 0 0 0 0 0 2 0 1
OR11H12 WILD-TYPE 38 62 28 80 69 48 41 28 73
'SLC22A3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0649 (Fisher's exact test), Q value = 0.28

Table S11144.  Gene #1043: 'SLC22A3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
SLC22A3 MUTATED 1 0 0 2
SLC22A3 WILD-TYPE 45 58 64 41
'SLC22A3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S11145.  Gene #1043: 'SLC22A3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
SLC22A3 MUTATED 1 1 1
SLC22A3 WILD-TYPE 50 82 76
'SLC22A3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00854 (Fisher's exact test), Q value = 0.086

Table S11146.  Gene #1043: 'SLC22A3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
SLC22A3 MUTATED 11 1 1 0
SLC22A3 WILD-TYPE 167 182 100 20

Figure S2997.  Get High-res Image Gene #1043: 'SLC22A3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'SLC22A3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.309 (Fisher's exact test), Q value = 0.64

Table S11147.  Gene #1043: 'SLC22A3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
SLC22A3 MUTATED 5 1 4
SLC22A3 WILD-TYPE 82 79 96
'SLC22A3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S11148.  Gene #1043: 'SLC22A3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
SLC22A3 MUTATED 2 5 4
SLC22A3 WILD-TYPE 87 155 134
'SLC22A3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.194 (Fisher's exact test), Q value = 0.5

Table S11149.  Gene #1043: 'SLC22A3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
SLC22A3 MUTATED 5 6 0
SLC22A3 WILD-TYPE 177 127 72
'SLC22A3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.251 (Fisher's exact test), Q value = 0.58

Table S11150.  Gene #1043: 'SLC22A3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
SLC22A3 MUTATED 1 3 5 4
SLC22A3 WILD-TYPE 111 93 87 182
'SLC22A3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.02 (Fisher's exact test), Q value = 0.14

Table S11151.  Gene #1043: 'SLC22A3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
SLC22A3 MUTATED 2 3 4 0 1 0 3
SLC22A3 WILD-TYPE 58 47 45 40 62 125 96

Figure S2998.  Get High-res Image Gene #1043: 'SLC22A3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'SLC22A3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.635 (Fisher's exact test), Q value = 0.93

Table S11152.  Gene #1043: 'SLC22A3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
SLC22A3 MUTATED 5 3 1 4
SLC22A3 WILD-TYPE 125 75 67 192
'SLC22A3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.648 (Fisher's exact test), Q value = 0.94

Table S11153.  Gene #1043: 'SLC22A3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
SLC22A3 MUTATED 1 3 1 1 3 0 2 1 1
SLC22A3 WILD-TYPE 39 59 27 79 66 48 41 27 73
'SLC22A3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.138 (Fisher's exact test), Q value = 0.41

Table S11154.  Gene #1043: 'SLC22A3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
SLC22A3 MUTATED 1 0 0 2
SLC22A3 WILD-TYPE 32 31 27 17
'SLC22A3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S11155.  Gene #1043: 'SLC22A3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
SLC22A3 MUTATED 2 0 1 0
SLC22A3 WILD-TYPE 52 10 23 22
'ATAD2B MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.289 (Fisher's exact test), Q value = 0.62

Table S11156.  Gene #1044: 'ATAD2B MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ATAD2B MUTATED 2 2 0 2
ATAD2B WILD-TYPE 44 56 64 41
'ATAD2B MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.656 (Fisher's exact test), Q value = 0.94

Table S11157.  Gene #1044: 'ATAD2B MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ATAD2B MUTATED 2 3 1
ATAD2B WILD-TYPE 49 80 76
'ATAD2B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0337 (Fisher's exact test), Q value = 0.19

Table S11158.  Gene #1044: 'ATAD2B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ATAD2B MUTATED 11 3 2 2
ATAD2B WILD-TYPE 167 180 99 18

Figure S2999.  Get High-res Image Gene #1044: 'ATAD2B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ATAD2B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.131 (Fisher's exact test), Q value = 0.4

Table S11159.  Gene #1044: 'ATAD2B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ATAD2B MUTATED 7 1 5
ATAD2B WILD-TYPE 80 79 95
'ATAD2B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.313 (Fisher's exact test), Q value = 0.64

Table S11160.  Gene #1044: 'ATAD2B MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ATAD2B MUTATED 2 6 9
ATAD2B WILD-TYPE 87 154 129
'ATAD2B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.677 (Fisher's exact test), Q value = 0.96

Table S11161.  Gene #1044: 'ATAD2B MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ATAD2B MUTATED 10 5 2
ATAD2B WILD-TYPE 172 128 70
'ATAD2B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00965 (Fisher's exact test), Q value = 0.093

Table S11162.  Gene #1044: 'ATAD2B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ATAD2B MUTATED 1 2 9 6
ATAD2B WILD-TYPE 111 94 83 180

Figure S3000.  Get High-res Image Gene #1044: 'ATAD2B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'ATAD2B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0131 (Fisher's exact test), Q value = 0.11

Table S11163.  Gene #1044: 'ATAD2B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ATAD2B MUTATED 2 0 6 1 4 1 4
ATAD2B WILD-TYPE 58 50 43 39 59 124 95

Figure S3001.  Get High-res Image Gene #1044: 'ATAD2B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ATAD2B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.235 (Fisher's exact test), Q value = 0.56

Table S11164.  Gene #1044: 'ATAD2B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ATAD2B MUTATED 4 6 1 6
ATAD2B WILD-TYPE 126 72 67 190
'ATAD2B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.185 (Fisher's exact test), Q value = 0.49

Table S11165.  Gene #1044: 'ATAD2B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ATAD2B MUTATED 2 6 1 2 4 0 1 0 1
ATAD2B WILD-TYPE 38 56 27 78 65 48 42 28 73
'ATAD2B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.353 (Fisher's exact test), Q value = 0.68

Table S11166.  Gene #1044: 'ATAD2B MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
ATAD2B MUTATED 2 1 1 3
ATAD2B WILD-TYPE 31 30 26 16
'ATAD2B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.886 (Fisher's exact test), Q value = 1

Table S11167.  Gene #1044: 'ATAD2B MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
ATAD2B MUTATED 5 0 1 1
ATAD2B WILD-TYPE 49 10 23 21
'GPR126 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0384 (Fisher's exact test), Q value = 0.21

Table S11168.  Gene #1045: 'GPR126 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
GPR126 MUTATED 4 0 1 3
GPR126 WILD-TYPE 42 58 63 40

Figure S3002.  Get High-res Image Gene #1045: 'GPR126 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'GPR126 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.151 (Fisher's exact test), Q value = 0.44

Table S11169.  Gene #1045: 'GPR126 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
GPR126 MUTATED 4 3 1
GPR126 WILD-TYPE 47 80 76
'GPR126 MUTATION STATUS' versus 'CN_CNMF'

P value = 7e-05 (Fisher's exact test), Q value = 0.0041

Table S11170.  Gene #1045: 'GPR126 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
GPR126 MUTATED 15 0 3 1
GPR126 WILD-TYPE 163 183 98 19

Figure S3003.  Get High-res Image Gene #1045: 'GPR126 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'GPR126 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0545 (Fisher's exact test), Q value = 0.25

Table S11171.  Gene #1045: 'GPR126 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
GPR126 MUTATED 6 0 4
GPR126 WILD-TYPE 81 80 96
'GPR126 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.772 (Fisher's exact test), Q value = 1

Table S11172.  Gene #1045: 'GPR126 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
GPR126 MUTATED 5 6 6
GPR126 WILD-TYPE 84 154 132
'GPR126 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0128 (Fisher's exact test), Q value = 0.11

Table S11173.  Gene #1045: 'GPR126 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
GPR126 MUTATED 3 7 7
GPR126 WILD-TYPE 179 126 65

Figure S3004.  Get High-res Image Gene #1045: 'GPR126 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'GPR126 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0167 (Fisher's exact test), Q value = 0.13

Table S11174.  Gene #1045: 'GPR126 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
GPR126 MUTATED 1 8 1 9
GPR126 WILD-TYPE 111 88 91 177

Figure S3005.  Get High-res Image Gene #1045: 'GPR126 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'GPR126 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.305 (Fisher's exact test), Q value = 0.63

Table S11175.  Gene #1045: 'GPR126 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
GPR126 MUTATED 2 3 3 1 1 2 7
GPR126 WILD-TYPE 58 47 46 39 62 123 92
'GPR126 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.513 (Fisher's exact test), Q value = 0.83

Table S11176.  Gene #1045: 'GPR126 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
GPR126 MUTATED 5 2 1 11
GPR126 WILD-TYPE 125 76 67 185
'GPR126 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.111 (Fisher's exact test), Q value = 0.37

Table S11177.  Gene #1045: 'GPR126 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
GPR126 MUTATED 3 2 2 1 7 1 0 1 2
GPR126 WILD-TYPE 37 60 26 79 62 47 43 27 72
'CHMP4C MUTATION STATUS' versus 'CN_CNMF'

P value = 0.339 (Fisher's exact test), Q value = 0.67

Table S11178.  Gene #1046: 'CHMP4C MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
CHMP4C MUTATED 3 0 1 0
CHMP4C WILD-TYPE 175 183 100 20
'CHMP4C MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.777 (Fisher's exact test), Q value = 1

Table S11179.  Gene #1046: 'CHMP4C MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
CHMP4C MUTATED 1 0 2
CHMP4C WILD-TYPE 86 80 98
'CHMP4C MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.794 (Fisher's exact test), Q value = 1

Table S11180.  Gene #1046: 'CHMP4C MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
CHMP4C MUTATED 0 2 1
CHMP4C WILD-TYPE 89 158 137
'CHMP4C MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.588 (Fisher's exact test), Q value = 0.89

Table S11181.  Gene #1046: 'CHMP4C MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
CHMP4C MUTATED 1 2 0
CHMP4C WILD-TYPE 181 131 72
'CHMP4C MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.303 (Fisher's exact test), Q value = 0.63

Table S11182.  Gene #1046: 'CHMP4C MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
CHMP4C MUTATED 0 2 1 1
CHMP4C WILD-TYPE 112 94 91 185
'CHMP4C MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0428 (Fisher's exact test), Q value = 0.22

Table S11183.  Gene #1046: 'CHMP4C MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
CHMP4C MUTATED 1 1 2 0 0 0 0
CHMP4C WILD-TYPE 59 49 47 40 63 125 99

Figure S3006.  Get High-res Image Gene #1046: 'CHMP4C MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CHMP4C MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.304 (Fisher's exact test), Q value = 0.63

Table S11184.  Gene #1046: 'CHMP4C MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
CHMP4C MUTATED 3 0 0 1
CHMP4C WILD-TYPE 127 78 68 195
'CHMP4C MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.283 (Fisher's exact test), Q value = 0.61

Table S11185.  Gene #1046: 'CHMP4C MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
CHMP4C MUTATED 0 1 1 0 2 0 0 0 0
CHMP4C WILD-TYPE 40 61 27 80 67 48 43 28 74
'POLQ MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0173 (Fisher's exact test), Q value = 0.13

Table S11186.  Gene #1047: 'POLQ MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
POLQ MUTATED 4 0 1 4
POLQ WILD-TYPE 42 58 63 39

Figure S3007.  Get High-res Image Gene #1047: 'POLQ MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'POLQ MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.374 (Fisher's exact test), Q value = 0.7

Table S11187.  Gene #1047: 'POLQ MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
POLQ MUTATED 4 3 2
POLQ WILD-TYPE 47 80 75
'POLQ MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S11188.  Gene #1047: 'POLQ MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
POLQ MUTATED 27 3 1 2
POLQ WILD-TYPE 151 180 100 18

Figure S3008.  Get High-res Image Gene #1047: 'POLQ MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'POLQ MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0893 (Fisher's exact test), Q value = 0.32

Table S11189.  Gene #1047: 'POLQ MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
POLQ MUTATED 8 3 13
POLQ WILD-TYPE 79 77 87
'POLQ MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00682 (Fisher's exact test), Q value = 0.076

Table S11190.  Gene #1047: 'POLQ MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
POLQ MUTATED 1 11 16
POLQ WILD-TYPE 88 149 122

Figure S3009.  Get High-res Image Gene #1047: 'POLQ MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'POLQ MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.335 (Fisher's exact test), Q value = 0.66

Table S11191.  Gene #1047: 'POLQ MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
POLQ MUTATED 12 13 3
POLQ WILD-TYPE 170 120 69
'POLQ MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0731 (Fisher's exact test), Q value = 0.29

Table S11192.  Gene #1047: 'POLQ MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
POLQ MUTATED 4 12 7 10
POLQ WILD-TYPE 108 84 85 176
'POLQ MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00071 (Fisher's exact test), Q value = 0.02

Table S11193.  Gene #1047: 'POLQ MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
POLQ MUTATED 4 4 11 2 2 2 8
POLQ WILD-TYPE 56 46 38 38 61 123 91

Figure S3010.  Get High-res Image Gene #1047: 'POLQ MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'POLQ MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.096 (Fisher's exact test), Q value = 0.34

Table S11194.  Gene #1047: 'POLQ MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
POLQ MUTATED 14 5 1 13
POLQ WILD-TYPE 116 73 67 183
'POLQ MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00746 (Fisher's exact test), Q value = 0.08

Table S11195.  Gene #1047: 'POLQ MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
POLQ MUTATED 4 8 4 2 9 0 3 1 2
POLQ WILD-TYPE 36 54 24 78 60 48 40 27 72

Figure S3011.  Get High-res Image Gene #1047: 'POLQ MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'POLQ MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0583 (Fisher's exact test), Q value = 0.26

Table S11196.  Gene #1047: 'POLQ MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
POLQ MUTATED 2 2 0 4
POLQ WILD-TYPE 31 29 27 15
'POLQ MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.492 (Fisher's exact test), Q value = 0.82

Table S11197.  Gene #1047: 'POLQ MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
POLQ MUTATED 5 1 2 0
POLQ WILD-TYPE 49 9 22 22
'CLGN MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0076 (Fisher's exact test), Q value = 0.081

Table S11198.  Gene #1048: 'CLGN MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
CLGN MUTATED 11 2 0 0
CLGN WILD-TYPE 167 181 101 20

Figure S3012.  Get High-res Image Gene #1048: 'CLGN MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'CLGN MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.29 (Fisher's exact test), Q value = 0.62

Table S11199.  Gene #1048: 'CLGN MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
CLGN MUTATED 4 1 6
CLGN WILD-TYPE 83 79 94
'CLGN MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.651 (Fisher's exact test), Q value = 0.94

Table S11200.  Gene #1048: 'CLGN MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
CLGN MUTATED 2 4 6
CLGN WILD-TYPE 87 156 132
'CLGN MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.745 (Fisher's exact test), Q value = 1

Table S11201.  Gene #1048: 'CLGN MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
CLGN MUTATED 6 5 1
CLGN WILD-TYPE 176 128 71
'CLGN MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.332 (Fisher's exact test), Q value = 0.66

Table S11202.  Gene #1048: 'CLGN MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
CLGN MUTATED 2 5 3 3
CLGN WILD-TYPE 110 91 89 183
'CLGN MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0555 (Fisher's exact test), Q value = 0.26

Table S11203.  Gene #1048: 'CLGN MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
CLGN MUTATED 2 3 3 0 2 0 3
CLGN WILD-TYPE 58 47 46 40 61 125 96
'CLGN MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.481 (Fisher's exact test), Q value = 0.81

Table S11204.  Gene #1048: 'CLGN MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
CLGN MUTATED 5 2 0 6
CLGN WILD-TYPE 125 76 68 190
'CLGN MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.234 (Fisher's exact test), Q value = 0.55

Table S11205.  Gene #1048: 'CLGN MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
CLGN MUTATED 2 3 0 1 5 0 0 0 2
CLGN WILD-TYPE 38 59 28 79 64 48 43 28 72
'EML4 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.018 (Fisher's exact test), Q value = 0.13

Table S11206.  Gene #1049: 'EML4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
EML4 MUTATED 3 0 0 0
EML4 WILD-TYPE 43 58 64 43

Figure S3013.  Get High-res Image Gene #1049: 'EML4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'EML4 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.25 (Fisher's exact test), Q value = 0.58

Table S11207.  Gene #1049: 'EML4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
EML4 MUTATED 2 1 0
EML4 WILD-TYPE 49 82 77
'EML4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.277 (Fisher's exact test), Q value = 0.6

Table S11208.  Gene #1049: 'EML4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
EML4 MUTATED 7 2 1 0
EML4 WILD-TYPE 171 181 100 20
'EML4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.893 (Fisher's exact test), Q value = 1

Table S11209.  Gene #1049: 'EML4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
EML4 MUTATED 3 2 2
EML4 WILD-TYPE 84 78 98
'EML4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.616 (Fisher's exact test), Q value = 0.91

Table S11210.  Gene #1049: 'EML4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
EML4 MUTATED 1 2 4
EML4 WILD-TYPE 88 158 134
'EML4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S11211.  Gene #1049: 'EML4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
EML4 MUTATED 4 2 1
EML4 WILD-TYPE 178 131 71
'EML4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.943 (Fisher's exact test), Q value = 1

Table S11212.  Gene #1049: 'EML4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
EML4 MUTATED 3 2 2 3
EML4 WILD-TYPE 109 94 90 183
'EML4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.753 (Fisher's exact test), Q value = 1

Table S11213.  Gene #1049: 'EML4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
EML4 MUTATED 1 2 1 1 2 1 2
EML4 WILD-TYPE 59 48 48 39 61 124 97
'EML4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S11214.  Gene #1049: 'EML4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
EML4 MUTATED 3 2 1 4
EML4 WILD-TYPE 127 76 67 192
'EML4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.55 (Fisher's exact test), Q value = 0.87

Table S11215.  Gene #1049: 'EML4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
EML4 MUTATED 2 2 1 1 3 0 0 0 1
EML4 WILD-TYPE 38 60 27 79 66 48 43 28 73
'AP1G2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00176 (Fisher's exact test), Q value = 0.035

Table S11216.  Gene #1050: 'AP1G2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
AP1G2 MUTATED 5 0 0 2
AP1G2 WILD-TYPE 41 58 64 41

Figure S3014.  Get High-res Image Gene #1050: 'AP1G2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'AP1G2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00053 (Fisher's exact test), Q value = 0.016

Table S11217.  Gene #1050: 'AP1G2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
AP1G2 MUTATED 6 0 1
AP1G2 WILD-TYPE 45 83 76

Figure S3015.  Get High-res Image Gene #1050: 'AP1G2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'AP1G2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00108 (Fisher's exact test), Q value = 0.026

Table S11218.  Gene #1050: 'AP1G2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
AP1G2 MUTATED 12 0 3 0
AP1G2 WILD-TYPE 166 183 98 20

Figure S3016.  Get High-res Image Gene #1050: 'AP1G2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'AP1G2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.178 (Fisher's exact test), Q value = 0.48

Table S11219.  Gene #1050: 'AP1G2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
AP1G2 MUTATED 4 0 3
AP1G2 WILD-TYPE 83 80 97
'AP1G2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0776 (Fisher's exact test), Q value = 0.3

Table S11220.  Gene #1050: 'AP1G2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
AP1G2 MUTATED 2 2 8
AP1G2 WILD-TYPE 87 158 130
'AP1G2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.635 (Fisher's exact test), Q value = 0.93

Table S11221.  Gene #1050: 'AP1G2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
AP1G2 MUTATED 7 4 1
AP1G2 WILD-TYPE 175 129 71
'AP1G2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0315 (Fisher's exact test), Q value = 0.18

Table S11222.  Gene #1050: 'AP1G2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
AP1G2 MUTATED 0 2 6 7
AP1G2 WILD-TYPE 112 94 86 179

Figure S3017.  Get High-res Image Gene #1050: 'AP1G2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'AP1G2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00485 (Fisher's exact test), Q value = 0.063

Table S11223.  Gene #1050: 'AP1G2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
AP1G2 MUTATED 2 1 5 0 1 0 6
AP1G2 WILD-TYPE 58 49 44 40 62 125 93

Figure S3018.  Get High-res Image Gene #1050: 'AP1G2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'AP1G2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.227 (Fisher's exact test), Q value = 0.54

Table S11224.  Gene #1050: 'AP1G2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
AP1G2 MUTATED 4 1 0 9
AP1G2 WILD-TYPE 126 77 68 187
'AP1G2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0226 (Fisher's exact test), Q value = 0.15

Table S11225.  Gene #1050: 'AP1G2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
AP1G2 MUTATED 0 3 1 2 6 0 0 2 0
AP1G2 WILD-TYPE 40 59 27 78 63 48 43 26 74

Figure S3019.  Get High-res Image Gene #1050: 'AP1G2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'AP1G2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0953 (Fisher's exact test), Q value = 0.34

Table S11226.  Gene #1050: 'AP1G2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
AP1G2 MUTATED 2 0 0 2
AP1G2 WILD-TYPE 31 31 27 17
'AP1G2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.867 (Fisher's exact test), Q value = 1

Table S11227.  Gene #1050: 'AP1G2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
AP1G2 MUTATED 3 0 1 0
AP1G2 WILD-TYPE 51 10 23 22
'CD3D MUTATION STATUS' versus 'CN_CNMF'

P value = 0.49 (Fisher's exact test), Q value = 0.82

Table S11228.  Gene #1051: 'CD3D MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
CD3D MUTATED 2 1 2 0
CD3D WILD-TYPE 176 182 99 20
'CD3D MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.833 (Fisher's exact test), Q value = 1

Table S11229.  Gene #1051: 'CD3D MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
CD3D MUTATED 2 1 1
CD3D WILD-TYPE 85 79 99
'CD3D MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S11230.  Gene #1051: 'CD3D MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
CD3D MUTATED 1 2 2
CD3D WILD-TYPE 88 158 136
'CD3D MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.718 (Fisher's exact test), Q value = 0.99

Table S11231.  Gene #1051: 'CD3D MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
CD3D MUTATED 3 2 0
CD3D WILD-TYPE 179 131 72
'CD3D MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.602 (Fisher's exact test), Q value = 0.91

Table S11232.  Gene #1051: 'CD3D MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
CD3D MUTATED 1 2 1 1
CD3D WILD-TYPE 111 94 91 185
'CD3D MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.398 (Fisher's exact test), Q value = 0.72

Table S11233.  Gene #1051: 'CD3D MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
CD3D MUTATED 1 0 1 1 1 0 1
CD3D WILD-TYPE 59 50 48 39 62 125 98
'CD3D MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.056 (Fisher's exact test), Q value = 0.26

Table S11234.  Gene #1051: 'CD3D MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
CD3D MUTATED 1 1 2 0
CD3D WILD-TYPE 129 77 66 196
'CD3D MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0631 (Fisher's exact test), Q value = 0.27

Table S11235.  Gene #1051: 'CD3D MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
CD3D MUTATED 0 2 0 0 0 0 2 0 0
CD3D WILD-TYPE 40 60 28 80 69 48 41 28 74
'CCDC69 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.223 (Fisher's exact test), Q value = 0.54

Table S11236.  Gene #1052: 'CCDC69 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
CCDC69 MUTATED 3 0 2 0
CCDC69 WILD-TYPE 175 183 99 20
'CCDC69 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S11237.  Gene #1052: 'CCDC69 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
CCDC69 MUTATED 1 1 2
CCDC69 WILD-TYPE 86 79 98
'CCDC69 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.635 (Fisher's exact test), Q value = 0.93

Table S11238.  Gene #1052: 'CCDC69 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
CCDC69 MUTATED 0 3 2
CCDC69 WILD-TYPE 89 157 136
'CCDC69 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S11239.  Gene #1052: 'CCDC69 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
CCDC69 MUTATED 2 2 1
CCDC69 WILD-TYPE 180 131 71
'CCDC69 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.601 (Fisher's exact test), Q value = 0.9

Table S11240.  Gene #1052: 'CCDC69 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
CCDC69 MUTATED 1 2 1 1
CCDC69 WILD-TYPE 111 94 91 185
'CCDC69 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.309 (Fisher's exact test), Q value = 0.64

Table S11241.  Gene #1052: 'CCDC69 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
CCDC69 MUTATED 1 1 0 0 2 0 1
CCDC69 WILD-TYPE 59 49 49 40 61 125 98
'CCDC69 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S11242.  Gene #1052: 'CCDC69 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
CCDC69 MUTATED 1 1 1 2
CCDC69 WILD-TYPE 129 77 67 194
'CCDC69 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.216 (Fisher's exact test), Q value = 0.53

Table S11243.  Gene #1052: 'CCDC69 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
CCDC69 MUTATED 0 1 0 0 2 0 2 0 0
CCDC69 WILD-TYPE 40 61 28 80 67 48 41 28 74
'NOL9 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.513 (Fisher's exact test), Q value = 0.83

Table S11244.  Gene #1053: 'NOL9 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
NOL9 MUTATED 4 1 2 0
NOL9 WILD-TYPE 174 182 99 20
'NOL9 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0127 (Fisher's exact test), Q value = 0.11

Table S11245.  Gene #1053: 'NOL9 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
NOL9 MUTATED 0 0 5
NOL9 WILD-TYPE 87 80 95

Figure S3020.  Get High-res Image Gene #1053: 'NOL9 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'NOL9 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.614 (Fisher's exact test), Q value = 0.91

Table S11246.  Gene #1053: 'NOL9 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
NOL9 MUTATED 1 2 4
NOL9 WILD-TYPE 88 158 134
'NOL9 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.546 (Fisher's exact test), Q value = 0.86

Table S11247.  Gene #1053: 'NOL9 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
NOL9 MUTATED 5 1 1
NOL9 WILD-TYPE 177 132 71
'NOL9 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.231 (Fisher's exact test), Q value = 0.55

Table S11248.  Gene #1053: 'NOL9 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
NOL9 MUTATED 1 3 2 1
NOL9 WILD-TYPE 111 93 90 185
'NOL9 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0162 (Fisher's exact test), Q value = 0.13

Table S11249.  Gene #1053: 'NOL9 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
NOL9 MUTATED 0 0 4 0 1 2 0
NOL9 WILD-TYPE 60 50 45 40 62 123 99

Figure S3021.  Get High-res Image Gene #1053: 'NOL9 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'NOL9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.862 (Fisher's exact test), Q value = 1

Table S11250.  Gene #1053: 'NOL9 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
NOL9 MUTATED 3 1 1 2
NOL9 WILD-TYPE 127 77 67 194
'NOL9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.492 (Fisher's exact test), Q value = 0.82

Table S11251.  Gene #1053: 'NOL9 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
NOL9 MUTATED 0 1 0 0 2 0 2 0 2
NOL9 WILD-TYPE 40 61 28 80 67 48 41 28 72
'DSC2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0522 (Fisher's exact test), Q value = 0.25

Table S11252.  Gene #1054: 'DSC2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
DSC2 MUTATED 11 3 1 0
DSC2 WILD-TYPE 167 180 100 20
'DSC2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.43 (Fisher's exact test), Q value = 0.76

Table S11253.  Gene #1054: 'DSC2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
DSC2 MUTATED 6 2 5
DSC2 WILD-TYPE 81 78 95
'DSC2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0791 (Fisher's exact test), Q value = 0.3

Table S11254.  Gene #1054: 'DSC2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
DSC2 MUTATED 0 6 7
DSC2 WILD-TYPE 89 154 131
'DSC2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S11255.  Gene #1054: 'DSC2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
DSC2 MUTATED 6 5 2
DSC2 WILD-TYPE 176 128 70
'DSC2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0345 (Fisher's exact test), Q value = 0.19

Table S11256.  Gene #1054: 'DSC2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
DSC2 MUTATED 2 6 5 2
DSC2 WILD-TYPE 110 90 87 184

Figure S3022.  Get High-res Image Gene #1054: 'DSC2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'DSC2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.043 (Fisher's exact test), Q value = 0.22

Table S11257.  Gene #1054: 'DSC2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
DSC2 MUTATED 2 3 4 1 2 0 3
DSC2 WILD-TYPE 58 47 45 39 61 125 96

Figure S3023.  Get High-res Image Gene #1054: 'DSC2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'DSC2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.359 (Fisher's exact test), Q value = 0.69

Table S11258.  Gene #1054: 'DSC2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
DSC2 MUTATED 6 3 2 3
DSC2 WILD-TYPE 124 75 66 193
'DSC2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.759 (Fisher's exact test), Q value = 1

Table S11259.  Gene #1054: 'DSC2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
DSC2 MUTATED 0 3 1 3 4 1 1 0 1
DSC2 WILD-TYPE 40 59 27 77 65 47 42 28 73
'DSC2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0132 (Fisher's exact test), Q value = 0.11

Table S11260.  Gene #1054: 'DSC2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
DSC2 MUTATED 0 1 0 3
DSC2 WILD-TYPE 33 30 27 16

Figure S3024.  Get High-res Image Gene #1054: 'DSC2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'DSC2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.869 (Fisher's exact test), Q value = 1

Table S11261.  Gene #1054: 'DSC2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
DSC2 MUTATED 3 0 1 0
DSC2 WILD-TYPE 51 10 23 22
'AGTPBP1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.563 (Fisher's exact test), Q value = 0.87

Table S11262.  Gene #1055: 'AGTPBP1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
AGTPBP1 MUTATED 0 1 1 2
AGTPBP1 WILD-TYPE 46 57 63 41
'AGTPBP1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.832 (Fisher's exact test), Q value = 1

Table S11263.  Gene #1055: 'AGTPBP1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
AGTPBP1 MUTATED 1 1 2
AGTPBP1 WILD-TYPE 50 82 75
'AGTPBP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.274 (Fisher's exact test), Q value = 0.6

Table S11264.  Gene #1055: 'AGTPBP1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
AGTPBP1 MUTATED 12 5 4 0
AGTPBP1 WILD-TYPE 166 178 97 20
'AGTPBP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.106 (Fisher's exact test), Q value = 0.36

Table S11265.  Gene #1055: 'AGTPBP1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
AGTPBP1 MUTATED 9 2 5
AGTPBP1 WILD-TYPE 78 78 95
'AGTPBP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.955 (Fisher's exact test), Q value = 1

Table S11266.  Gene #1055: 'AGTPBP1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
AGTPBP1 MUTATED 5 8 6
AGTPBP1 WILD-TYPE 84 152 132
'AGTPBP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.255 (Fisher's exact test), Q value = 0.58

Table S11267.  Gene #1055: 'AGTPBP1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
AGTPBP1 MUTATED 9 9 1
AGTPBP1 WILD-TYPE 173 124 71
'AGTPBP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.153 (Fisher's exact test), Q value = 0.44

Table S11268.  Gene #1055: 'AGTPBP1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
AGTPBP1 MUTATED 3 6 7 5
AGTPBP1 WILD-TYPE 109 90 85 181
'AGTPBP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.27 (Fisher's exact test), Q value = 0.59

Table S11269.  Gene #1055: 'AGTPBP1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
AGTPBP1 MUTATED 3 2 4 2 5 2 3
AGTPBP1 WILD-TYPE 57 48 45 38 58 123 96
'AGTPBP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.35 (Fisher's exact test), Q value = 0.68

Table S11270.  Gene #1055: 'AGTPBP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
AGTPBP1 MUTATED 6 6 1 8
AGTPBP1 WILD-TYPE 124 72 67 188
'AGTPBP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.681 (Fisher's exact test), Q value = 0.96

Table S11271.  Gene #1055: 'AGTPBP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
AGTPBP1 MUTATED 2 5 0 4 5 1 1 0 3
AGTPBP1 WILD-TYPE 38 57 28 76 64 47 42 28 71
'AGTPBP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.343 (Fisher's exact test), Q value = 0.67

Table S11272.  Gene #1055: 'AGTPBP1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
AGTPBP1 MUTATED 1 2 0 2
AGTPBP1 WILD-TYPE 32 29 27 17
'AGTPBP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.756 (Fisher's exact test), Q value = 1

Table S11273.  Gene #1055: 'AGTPBP1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
AGTPBP1 MUTATED 4 0 1 0
AGTPBP1 WILD-TYPE 50 10 23 22
'C18ORF19 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0157 (Fisher's exact test), Q value = 0.12

Table S11274.  Gene #1056: 'C18ORF19 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
C18ORF19 MUTATED 1 0 0 3
C18ORF19 WILD-TYPE 45 58 64 40

Figure S3025.  Get High-res Image Gene #1056: 'C18ORF19 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'C18ORF19 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0393 (Fisher's exact test), Q value = 0.21

Table S11275.  Gene #1056: 'C18ORF19 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
C18ORF19 MUTATED 3 0 1
C18ORF19 WILD-TYPE 48 83 76

Figure S3026.  Get High-res Image Gene #1056: 'C18ORF19 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'C18ORF19 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.461 (Fisher's exact test), Q value = 0.79

Table S11276.  Gene #1056: 'C18ORF19 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
C18ORF19 MUTATED 6 2 1 0
C18ORF19 WILD-TYPE 172 181 100 20
'C18ORF19 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0772 (Fisher's exact test), Q value = 0.3

Table S11277.  Gene #1056: 'C18ORF19 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
C18ORF19 MUTATED 4 0 1
C18ORF19 WILD-TYPE 83 80 99
'C18ORF19 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.903 (Fisher's exact test), Q value = 1

Table S11278.  Gene #1056: 'C18ORF19 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
C18ORF19 MUTATED 1 4 3
C18ORF19 WILD-TYPE 88 156 135
'C18ORF19 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.641 (Fisher's exact test), Q value = 0.93

Table S11279.  Gene #1056: 'C18ORF19 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
C18ORF19 MUTATED 3 4 1
C18ORF19 WILD-TYPE 179 129 71
'C18ORF19 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.285 (Fisher's exact test), Q value = 0.61

Table S11280.  Gene #1056: 'C18ORF19 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
C18ORF19 MUTATED 0 2 3 4
C18ORF19 WILD-TYPE 112 94 89 182
'C18ORF19 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.228 (Fisher's exact test), Q value = 0.55

Table S11281.  Gene #1056: 'C18ORF19 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
C18ORF19 MUTATED 1 1 2 0 2 0 3
C18ORF19 WILD-TYPE 59 49 47 40 61 125 96
'C18ORF19 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.757 (Fisher's exact test), Q value = 1

Table S11282.  Gene #1056: 'C18ORF19 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
C18ORF19 MUTATED 3 2 0 4
C18ORF19 WILD-TYPE 127 76 68 192
'C18ORF19 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0442 (Fisher's exact test), Q value = 0.22

Table S11283.  Gene #1056: 'C18ORF19 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
C18ORF19 MUTATED 1 2 0 0 5 0 1 0 0
C18ORF19 WILD-TYPE 39 60 28 80 64 48 42 28 74

Figure S3027.  Get High-res Image Gene #1056: 'C18ORF19 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'AWAT1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0747 (Fisher's exact test), Q value = 0.29

Table S11284.  Gene #1057: 'AWAT1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
AWAT1 MUTATED 2 0 0 2
AWAT1 WILD-TYPE 44 58 64 41
'AWAT1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.178 (Fisher's exact test), Q value = 0.48

Table S11285.  Gene #1057: 'AWAT1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
AWAT1 MUTATED 2 0 2
AWAT1 WILD-TYPE 49 83 75
'AWAT1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.112 (Fisher's exact test), Q value = 0.37

Table S11286.  Gene #1057: 'AWAT1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
AWAT1 MUTATED 7 2 0 0
AWAT1 WILD-TYPE 171 181 101 20
'AWAT1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S11287.  Gene #1057: 'AWAT1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
AWAT1 MUTATED 2 1 2
AWAT1 WILD-TYPE 85 79 98
'AWAT1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.31 (Fisher's exact test), Q value = 0.64

Table S11288.  Gene #1057: 'AWAT1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
AWAT1 MUTATED 0 4 4
AWAT1 WILD-TYPE 89 156 134
'AWAT1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.638 (Fisher's exact test), Q value = 0.93

Table S11289.  Gene #1057: 'AWAT1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
AWAT1 MUTATED 3 4 1
AWAT1 WILD-TYPE 179 129 71
'AWAT1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.968 (Fisher's exact test), Q value = 1

Table S11290.  Gene #1057: 'AWAT1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
AWAT1 MUTATED 2 2 2 3
AWAT1 WILD-TYPE 110 94 90 183
'AWAT1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0452 (Fisher's exact test), Q value = 0.23

Table S11291.  Gene #1057: 'AWAT1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
AWAT1 MUTATED 4 0 1 0 1 0 3
AWAT1 WILD-TYPE 56 50 48 40 62 125 96

Figure S3028.  Get High-res Image Gene #1057: 'AWAT1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'AWAT1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.734 (Fisher's exact test), Q value = 1

Table S11292.  Gene #1057: 'AWAT1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
AWAT1 MUTATED 3 1 0 5
AWAT1 WILD-TYPE 127 77 68 191
'AWAT1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.77 (Fisher's exact test), Q value = 1

Table S11293.  Gene #1057: 'AWAT1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
AWAT1 MUTATED 0 2 0 1 3 1 0 1 1
AWAT1 WILD-TYPE 40 60 28 79 66 47 43 27 73
'YSK4 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00544 (Fisher's exact test), Q value = 0.067

Table S11294.  Gene #1058: 'YSK4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
YSK4 MUTATED 4 1 0 5
YSK4 WILD-TYPE 42 57 64 38

Figure S3029.  Get High-res Image Gene #1058: 'YSK4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'YSK4 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0396 (Fisher's exact test), Q value = 0.21

Table S11295.  Gene #1058: 'YSK4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
YSK4 MUTATED 6 2 2
YSK4 WILD-TYPE 45 81 75

Figure S3030.  Get High-res Image Gene #1058: 'YSK4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'YSK4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00119 (Fisher's exact test), Q value = 0.028

Table S11296.  Gene #1058: 'YSK4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
YSK4 MUTATED 21 8 1 0
YSK4 WILD-TYPE 157 175 100 20

Figure S3031.  Get High-res Image Gene #1058: 'YSK4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'YSK4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.841 (Fisher's exact test), Q value = 1

Table S11297.  Gene #1058: 'YSK4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
YSK4 MUTATED 6 5 9
YSK4 WILD-TYPE 81 75 91
'YSK4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.375 (Fisher's exact test), Q value = 0.7

Table S11298.  Gene #1058: 'YSK4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
YSK4 MUTATED 3 12 11
YSK4 WILD-TYPE 86 148 127
'YSK4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S11299.  Gene #1058: 'YSK4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
YSK4 MUTATED 12 9 5
YSK4 WILD-TYPE 170 124 67
'YSK4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.914 (Fisher's exact test), Q value = 1

Table S11300.  Gene #1058: 'YSK4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
YSK4 MUTATED 6 6 7 11
YSK4 WILD-TYPE 106 90 85 175
'YSK4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0442 (Fisher's exact test), Q value = 0.22

Table S11301.  Gene #1058: 'YSK4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
YSK4 MUTATED 5 5 6 2 2 2 8
YSK4 WILD-TYPE 55 45 43 38 61 123 91

Figure S3032.  Get High-res Image Gene #1058: 'YSK4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'YSK4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.872 (Fisher's exact test), Q value = 1

Table S11302.  Gene #1058: 'YSK4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
YSK4 MUTATED 10 4 4 11
YSK4 WILD-TYPE 120 74 64 185
'YSK4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00476 (Fisher's exact test), Q value = 0.062

Table S11303.  Gene #1058: 'YSK4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
YSK4 MUTATED 6 4 2 1 7 0 6 1 2
YSK4 WILD-TYPE 34 58 26 79 62 48 37 27 72

Figure S3033.  Get High-res Image Gene #1058: 'YSK4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'YSK4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00155 (Fisher's exact test), Q value = 0.032

Table S11304.  Gene #1058: 'YSK4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
YSK4 MUTATED 0 0 1 4
YSK4 WILD-TYPE 33 31 26 15

Figure S3034.  Get High-res Image Gene #1058: 'YSK4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'YSK4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S11305.  Gene #1058: 'YSK4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
YSK4 MUTATED 3 0 1 1
YSK4 WILD-TYPE 51 10 23 21
'GSTA5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.868 (Fisher's exact test), Q value = 1

Table S11306.  Gene #1059: 'GSTA5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
GSTA5 MUTATED 4 3 1 0
GSTA5 WILD-TYPE 174 180 100 20
'GSTA5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.52 (Fisher's exact test), Q value = 0.84

Table S11307.  Gene #1059: 'GSTA5 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
GSTA5 MUTATED 3 2 1
GSTA5 WILD-TYPE 84 78 99
'GSTA5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.331 (Fisher's exact test), Q value = 0.66

Table S11308.  Gene #1059: 'GSTA5 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
GSTA5 MUTATED 1 1 4
GSTA5 WILD-TYPE 88 159 134
'GSTA5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.409 (Fisher's exact test), Q value = 0.74

Table S11309.  Gene #1059: 'GSTA5 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
GSTA5 MUTATED 3 1 2
GSTA5 WILD-TYPE 179 132 70
'GSTA5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.593 (Fisher's exact test), Q value = 0.9

Table S11310.  Gene #1059: 'GSTA5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
GSTA5 MUTATED 2 1 3 2
GSTA5 WILD-TYPE 110 95 89 184
'GSTA5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0351 (Fisher's exact test), Q value = 0.19

Table S11311.  Gene #1059: 'GSTA5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
GSTA5 MUTATED 0 1 0 1 4 0 2
GSTA5 WILD-TYPE 60 49 49 39 59 125 97

Figure S3035.  Get High-res Image Gene #1059: 'GSTA5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'GSTA5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.377 (Fisher's exact test), Q value = 0.71

Table S11312.  Gene #1059: 'GSTA5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
GSTA5 MUTATED 2 3 0 3
GSTA5 WILD-TYPE 128 75 68 193
'GSTA5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.647 (Fisher's exact test), Q value = 0.93

Table S11313.  Gene #1059: 'GSTA5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
GSTA5 MUTATED 1 3 1 1 1 0 0 0 1
GSTA5 WILD-TYPE 39 59 27 79 68 48 43 28 73
'PCOLCE2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.387 (Fisher's exact test), Q value = 0.71

Table S11314.  Gene #1060: 'PCOLCE2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
PCOLCE2 MUTATED 2 1 1 3
PCOLCE2 WILD-TYPE 44 57 63 40
'PCOLCE2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.432 (Fisher's exact test), Q value = 0.76

Table S11315.  Gene #1060: 'PCOLCE2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
PCOLCE2 MUTATED 3 3 1
PCOLCE2 WILD-TYPE 48 80 76
'PCOLCE2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.423 (Fisher's exact test), Q value = 0.75

Table S11316.  Gene #1060: 'PCOLCE2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
PCOLCE2 MUTATED 8 4 2 1
PCOLCE2 WILD-TYPE 170 179 99 19
'PCOLCE2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.665 (Fisher's exact test), Q value = 0.95

Table S11317.  Gene #1060: 'PCOLCE2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
PCOLCE2 MUTATED 4 2 2
PCOLCE2 WILD-TYPE 83 78 98
'PCOLCE2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.72 (Fisher's exact test), Q value = 0.99

Table S11318.  Gene #1060: 'PCOLCE2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
PCOLCE2 MUTATED 2 7 4
PCOLCE2 WILD-TYPE 87 153 134
'PCOLCE2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S11319.  Gene #1060: 'PCOLCE2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
PCOLCE2 MUTATED 6 5 2
PCOLCE2 WILD-TYPE 176 128 70
'PCOLCE2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.983 (Fisher's exact test), Q value = 1

Table S11320.  Gene #1060: 'PCOLCE2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
PCOLCE2 MUTATED 4 3 2 6
PCOLCE2 WILD-TYPE 108 93 90 180
'PCOLCE2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.671 (Fisher's exact test), Q value = 0.95

Table S11321.  Gene #1060: 'PCOLCE2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
PCOLCE2 MUTATED 1 1 3 1 3 2 4
PCOLCE2 WILD-TYPE 59 49 46 39 60 123 95
'PCOLCE2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.81 (Fisher's exact test), Q value = 1

Table S11322.  Gene #1060: 'PCOLCE2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
PCOLCE2 MUTATED 5 1 2 6
PCOLCE2 WILD-TYPE 125 77 66 190
'PCOLCE2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.549 (Fisher's exact test), Q value = 0.87

Table S11323.  Gene #1060: 'PCOLCE2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
PCOLCE2 MUTATED 1 3 1 1 5 1 1 0 1
PCOLCE2 WILD-TYPE 39 59 27 79 64 47 42 28 73
'PCOLCE2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.166 (Fisher's exact test), Q value = 0.46

Table S11324.  Gene #1060: 'PCOLCE2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
PCOLCE2 MUTATED 0 0 2 1
PCOLCE2 WILD-TYPE 33 31 25 18
'PCOLCE2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0862 (Fisher's exact test), Q value = 0.32

Table S11325.  Gene #1060: 'PCOLCE2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
PCOLCE2 MUTATED 0 1 1 1
PCOLCE2 WILD-TYPE 54 9 23 21
'BUB1B MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.027 (Fisher's exact test), Q value = 0.17

Table S11326.  Gene #1061: 'BUB1B MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
BUB1B MUTATED 3 0 0 2
BUB1B WILD-TYPE 43 58 64 41

Figure S3036.  Get High-res Image Gene #1061: 'BUB1B MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'BUB1B MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.637 (Fisher's exact test), Q value = 0.93

Table S11327.  Gene #1061: 'BUB1B MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
BUB1B MUTATED 1 1 3
BUB1B WILD-TYPE 50 82 74
'BUB1B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0308 (Fisher's exact test), Q value = 0.18

Table S11328.  Gene #1061: 'BUB1B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
BUB1B MUTATED 8 2 0 1
BUB1B WILD-TYPE 170 181 101 19

Figure S3037.  Get High-res Image Gene #1061: 'BUB1B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'BUB1B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.683 (Fisher's exact test), Q value = 0.96

Table S11329.  Gene #1061: 'BUB1B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
BUB1B MUTATED 3 1 2
BUB1B WILD-TYPE 84 79 98
'BUB1B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.384 (Fisher's exact test), Q value = 0.71

Table S11330.  Gene #1061: 'BUB1B MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
BUB1B MUTATED 1 2 5
BUB1B WILD-TYPE 88 158 133
'BUB1B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.565 (Fisher's exact test), Q value = 0.87

Table S11331.  Gene #1061: 'BUB1B MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
BUB1B MUTATED 5 3 0
BUB1B WILD-TYPE 177 130 72
'BUB1B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.827 (Fisher's exact test), Q value = 1

Table S11332.  Gene #1061: 'BUB1B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
BUB1B MUTATED 2 3 1 5
BUB1B WILD-TYPE 110 93 91 181
'BUB1B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.725 (Fisher's exact test), Q value = 0.99

Table S11333.  Gene #1061: 'BUB1B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
BUB1B MUTATED 2 1 2 1 1 1 3
BUB1B WILD-TYPE 58 49 47 39 62 124 96
'BUB1B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.921 (Fisher's exact test), Q value = 1

Table S11334.  Gene #1061: 'BUB1B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
BUB1B MUTATED 3 1 1 6
BUB1B WILD-TYPE 127 77 67 190
'BUB1B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.397 (Fisher's exact test), Q value = 0.72

Table S11335.  Gene #1061: 'BUB1B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
BUB1B MUTATED 0 1 1 1 4 0 2 1 1
BUB1B WILD-TYPE 40 61 27 79 65 48 41 27 73
'BUB1B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.872 (Fisher's exact test), Q value = 1

Table S11336.  Gene #1061: 'BUB1B MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
BUB1B MUTATED 1 1 0 1
BUB1B WILD-TYPE 32 30 27 18
'BUB1B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.561 (Fisher's exact test), Q value = 0.87

Table S11337.  Gene #1061: 'BUB1B MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
BUB1B MUTATED 3 0 0 0
BUB1B WILD-TYPE 51 10 24 22
'MC3R MUTATION STATUS' versus 'CN_CNMF'

P value = 0.554 (Fisher's exact test), Q value = 0.87

Table S11338.  Gene #1062: 'MC3R MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
MC3R MUTATED 4 7 2 1
MC3R WILD-TYPE 174 176 99 19
'MC3R MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.123 (Fisher's exact test), Q value = 0.39

Table S11339.  Gene #1062: 'MC3R MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
MC3R MUTATED 4 7 2
MC3R WILD-TYPE 83 73 98
'MC3R MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.321 (Fisher's exact test), Q value = 0.65

Table S11340.  Gene #1062: 'MC3R MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
MC3R MUTATED 1 6 7
MC3R WILD-TYPE 88 154 131
'MC3R MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.157 (Fisher's exact test), Q value = 0.45

Table S11341.  Gene #1062: 'MC3R MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
MC3R MUTATED 8 6 0
MC3R WILD-TYPE 174 127 72
'MC3R MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.015 (Fisher's exact test), Q value = 0.12

Table S11342.  Gene #1062: 'MC3R MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
MC3R MUTATED 7 4 2 1
MC3R WILD-TYPE 105 92 90 185

Figure S3038.  Get High-res Image Gene #1062: 'MC3R MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'MC3R MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0146 (Fisher's exact test), Q value = 0.12

Table S11343.  Gene #1062: 'MC3R MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
MC3R MUTATED 4 3 3 1 2 0 1
MC3R WILD-TYPE 56 47 46 39 61 125 98

Figure S3039.  Get High-res Image Gene #1062: 'MC3R MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'MC3R MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.02 (Fisher's exact test), Q value = 0.14

Table S11344.  Gene #1062: 'MC3R MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
MC3R MUTATED 6 4 3 1
MC3R WILD-TYPE 124 74 65 195

Figure S3040.  Get High-res Image Gene #1062: 'MC3R MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'MC3R MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00311 (Fisher's exact test), Q value = 0.05

Table S11345.  Gene #1062: 'MC3R MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
MC3R MUTATED 2 2 4 0 1 2 3 0 0
MC3R WILD-TYPE 38 60 24 80 68 46 40 28 74

Figure S3041.  Get High-res Image Gene #1062: 'MC3R MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'MC3R MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.59 (Fisher's exact test), Q value = 0.89

Table S11346.  Gene #1062: 'MC3R MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
MC3R MUTATED 3 1 1 0
MC3R WILD-TYPE 30 30 26 19
'MC3R MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.697 (Fisher's exact test), Q value = 0.97

Table S11347.  Gene #1062: 'MC3R MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
MC3R MUTATED 2 1 1 1
MC3R WILD-TYPE 52 9 23 21
'DNASE1L3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.313 (Fisher's exact test), Q value = 0.64

Table S11348.  Gene #1063: 'DNASE1L3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
DNASE1L3 MUTATED 4 1 3 0
DNASE1L3 WILD-TYPE 174 182 98 20
'DNASE1L3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.327 (Fisher's exact test), Q value = 0.66

Table S11349.  Gene #1063: 'DNASE1L3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
DNASE1L3 MUTATED 4 1 1
DNASE1L3 WILD-TYPE 83 79 99
'DNASE1L3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.457 (Fisher's exact test), Q value = 0.78

Table S11350.  Gene #1063: 'DNASE1L3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
DNASE1L3 MUTATED 2 1 2
DNASE1L3 WILD-TYPE 87 159 136
'DNASE1L3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.504 (Fisher's exact test), Q value = 0.83

Table S11351.  Gene #1063: 'DNASE1L3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
DNASE1L3 MUTATED 4 1 0
DNASE1L3 WILD-TYPE 178 132 72
'DNASE1L3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.925 (Fisher's exact test), Q value = 1

Table S11352.  Gene #1063: 'DNASE1L3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
DNASE1L3 MUTATED 2 1 2 3
DNASE1L3 WILD-TYPE 110 95 90 183
'DNASE1L3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.68 (Fisher's exact test), Q value = 0.96

Table S11353.  Gene #1063: 'DNASE1L3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
DNASE1L3 MUTATED 0 0 2 1 1 2 2
DNASE1L3 WILD-TYPE 60 50 47 39 62 123 97
'DNASE1L3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0623 (Fisher's exact test), Q value = 0.27

Table S11354.  Gene #1063: 'DNASE1L3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
DNASE1L3 MUTATED 1 4 0 2
DNASE1L3 WILD-TYPE 129 74 68 194
'DNASE1L3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0842 (Fisher's exact test), Q value = 0.31

Table S11355.  Gene #1063: 'DNASE1L3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
DNASE1L3 MUTATED 0 3 0 0 1 0 0 2 1
DNASE1L3 WILD-TYPE 40 59 28 80 68 48 43 26 73
'FAM98B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.178 (Fisher's exact test), Q value = 0.48

Table S11356.  Gene #1064: 'FAM98B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
FAM98B MUTATED 4 0 1 0
FAM98B WILD-TYPE 174 183 100 20
'FAM98B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S11357.  Gene #1064: 'FAM98B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
FAM98B MUTATED 1 1 1
FAM98B WILD-TYPE 86 79 99
'FAM98B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.797 (Fisher's exact test), Q value = 1

Table S11358.  Gene #1064: 'FAM98B MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
FAM98B MUTATED 0 2 1
FAM98B WILD-TYPE 89 158 137
'FAM98B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.59 (Fisher's exact test), Q value = 0.89

Table S11359.  Gene #1064: 'FAM98B MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
FAM98B MUTATED 1 2 0
FAM98B WILD-TYPE 181 131 72
'FAM98B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.458 (Fisher's exact test), Q value = 0.78

Table S11360.  Gene #1064: 'FAM98B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
FAM98B MUTATED 0 1 2 2
FAM98B WILD-TYPE 112 95 90 184
'FAM98B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.397 (Fisher's exact test), Q value = 0.72

Table S11361.  Gene #1064: 'FAM98B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
FAM98B MUTATED 1 0 1 1 1 0 1
FAM98B WILD-TYPE 59 50 48 39 62 125 98
'FAM98B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.864 (Fisher's exact test), Q value = 1

Table S11362.  Gene #1064: 'FAM98B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
FAM98B MUTATED 2 1 0 2
FAM98B WILD-TYPE 128 77 68 194
'FAM98B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.179 (Fisher's exact test), Q value = 0.48

Table S11363.  Gene #1064: 'FAM98B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
FAM98B MUTATED 2 1 0 0 2 0 0 0 0
FAM98B WILD-TYPE 38 61 28 80 67 48 43 28 74
'DCTN5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.442 (Fisher's exact test), Q value = 0.77

Table S11364.  Gene #1065: 'DCTN5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
DCTN5 MUTATED 4 2 0 0
DCTN5 WILD-TYPE 174 181 101 20
'DCTN5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.384 (Fisher's exact test), Q value = 0.71

Table S11365.  Gene #1065: 'DCTN5 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
DCTN5 MUTATED 1 1 4
DCTN5 WILD-TYPE 86 79 96
'DCTN5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S11366.  Gene #1065: 'DCTN5 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
DCTN5 MUTATED 1 3 2
DCTN5 WILD-TYPE 88 157 136
'DCTN5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.492 (Fisher's exact test), Q value = 0.82

Table S11367.  Gene #1065: 'DCTN5 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
DCTN5 MUTATED 2 2 2
DCTN5 WILD-TYPE 180 131 70
'DCTN5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.152 (Fisher's exact test), Q value = 0.44

Table S11368.  Gene #1065: 'DCTN5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
DCTN5 MUTATED 2 3 0 1
DCTN5 WILD-TYPE 110 93 92 185
'DCTN5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.161 (Fisher's exact test), Q value = 0.45

Table S11369.  Gene #1065: 'DCTN5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
DCTN5 MUTATED 0 1 2 1 1 0 1
DCTN5 WILD-TYPE 60 49 47 39 62 125 98
'DCTN5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.26 (Fisher's exact test), Q value = 0.58

Table S11370.  Gene #1065: 'DCTN5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
DCTN5 MUTATED 4 0 0 2
DCTN5 WILD-TYPE 126 78 68 194
'DCTN5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.658 (Fisher's exact test), Q value = 0.94

Table S11371.  Gene #1065: 'DCTN5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
DCTN5 MUTATED 1 0 0 2 2 1 0 0 0
DCTN5 WILD-TYPE 39 62 28 78 67 47 43 28 74
'SLC11A2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0325 (Fisher's exact test), Q value = 0.18

Table S11372.  Gene #1066: 'SLC11A2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
SLC11A2 MUTATED 3 0 0 1
SLC11A2 WILD-TYPE 43 58 64 42

Figure S3042.  Get High-res Image Gene #1066: 'SLC11A2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'SLC11A2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.555 (Fisher's exact test), Q value = 0.87

Table S11373.  Gene #1066: 'SLC11A2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
SLC11A2 MUTATED 2 1 1
SLC11A2 WILD-TYPE 49 82 76
'SLC11A2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00165 (Fisher's exact test), Q value = 0.034

Table S11374.  Gene #1066: 'SLC11A2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
SLC11A2 MUTATED 9 0 0 0
SLC11A2 WILD-TYPE 169 183 101 20

Figure S3043.  Get High-res Image Gene #1066: 'SLC11A2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'SLC11A2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.381 (Fisher's exact test), Q value = 0.71

Table S11375.  Gene #1066: 'SLC11A2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
SLC11A2 MUTATED 2 0 3
SLC11A2 WILD-TYPE 85 80 97
'SLC11A2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.139 (Fisher's exact test), Q value = 0.41

Table S11376.  Gene #1066: 'SLC11A2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
SLC11A2 MUTATED 0 1 4
SLC11A2 WILD-TYPE 89 159 134
'SLC11A2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.719 (Fisher's exact test), Q value = 0.99

Table S11377.  Gene #1066: 'SLC11A2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
SLC11A2 MUTATED 3 2 0
SLC11A2 WILD-TYPE 179 131 72
'SLC11A2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.29 (Fisher's exact test), Q value = 0.62

Table S11378.  Gene #1066: 'SLC11A2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
SLC11A2 MUTATED 0 2 3 4
SLC11A2 WILD-TYPE 112 94 89 182
'SLC11A2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00939 (Fisher's exact test), Q value = 0.091

Table S11379.  Gene #1066: 'SLC11A2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
SLC11A2 MUTATED 1 0 5 0 0 1 2
SLC11A2 WILD-TYPE 59 50 44 40 63 124 97

Figure S3044.  Get High-res Image Gene #1066: 'SLC11A2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'SLC11A2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.405 (Fisher's exact test), Q value = 0.73

Table S11380.  Gene #1066: 'SLC11A2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
SLC11A2 MUTATED 2 3 0 4
SLC11A2 WILD-TYPE 128 75 68 192
'SLC11A2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.5 (Fisher's exact test), Q value = 0.83

Table S11381.  Gene #1066: 'SLC11A2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
SLC11A2 MUTATED 0 2 0 2 3 0 1 1 0
SLC11A2 WILD-TYPE 40 60 28 78 66 48 42 27 74
'SERPINB7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.164 (Fisher's exact test), Q value = 0.46

Table S11382.  Gene #1067: 'SERPINB7 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
SERPINB7 MUTATED 6 2 0 0
SERPINB7 WILD-TYPE 172 181 101 20
'SERPINB7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.289 (Fisher's exact test), Q value = 0.62

Table S11383.  Gene #1067: 'SERPINB7 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
SERPINB7 MUTATED 3 0 3
SERPINB7 WILD-TYPE 84 80 97
'SERPINB7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.114 (Fisher's exact test), Q value = 0.37

Table S11384.  Gene #1067: 'SERPINB7 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
SERPINB7 MUTATED 0 6 2
SERPINB7 WILD-TYPE 89 154 136
'SERPINB7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.256 (Fisher's exact test), Q value = 0.58

Table S11385.  Gene #1067: 'SERPINB7 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
SERPINB7 MUTATED 2 5 1
SERPINB7 WILD-TYPE 180 128 71
'SERPINB7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.559 (Fisher's exact test), Q value = 0.87

Table S11386.  Gene #1067: 'SERPINB7 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
SERPINB7 MUTATED 1 3 2 2
SERPINB7 WILD-TYPE 111 93 90 184
'SERPINB7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0558 (Fisher's exact test), Q value = 0.26

Table S11387.  Gene #1067: 'SERPINB7 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
SERPINB7 MUTATED 0 1 3 0 2 0 2
SERPINB7 WILD-TYPE 60 49 46 40 61 125 97
'SERPINB7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.636 (Fisher's exact test), Q value = 0.93

Table S11388.  Gene #1067: 'SERPINB7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
SERPINB7 MUTATED 3 2 0 3
SERPINB7 WILD-TYPE 127 76 68 193
'SERPINB7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.784 (Fisher's exact test), Q value = 1

Table S11389.  Gene #1067: 'SERPINB7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
SERPINB7 MUTATED 1 1 1 0 2 1 1 0 1
SERPINB7 WILD-TYPE 39 61 27 80 67 47 42 28 73
'SERPINB7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0652 (Fisher's exact test), Q value = 0.28

Table S11390.  Gene #1067: 'SERPINB7 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
SERPINB7 MUTATED 0 2 0 2
SERPINB7 WILD-TYPE 33 29 27 17
'SERPINB7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S11391.  Gene #1067: 'SERPINB7 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
SERPINB7 MUTATED 2 0 1 1
SERPINB7 WILD-TYPE 52 10 23 21
'PTPRJ MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0328 (Fisher's exact test), Q value = 0.19

Table S11392.  Gene #1068: 'PTPRJ MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
PTPRJ MUTATED 3 0 0 1
PTPRJ WILD-TYPE 43 58 64 42

Figure S3045.  Get High-res Image Gene #1068: 'PTPRJ MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'PTPRJ MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0394 (Fisher's exact test), Q value = 0.21

Table S11393.  Gene #1068: 'PTPRJ MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
PTPRJ MUTATED 3 0 1
PTPRJ WILD-TYPE 48 83 76

Figure S3046.  Get High-res Image Gene #1068: 'PTPRJ MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'PTPRJ MUTATION STATUS' versus 'CN_CNMF'

P value = 0.128 (Fisher's exact test), Q value = 0.4

Table S11394.  Gene #1068: 'PTPRJ MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
PTPRJ MUTATED 11 5 1 0
PTPRJ WILD-TYPE 167 178 100 20
'PTPRJ MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.725 (Fisher's exact test), Q value = 0.99

Table S11395.  Gene #1068: 'PTPRJ MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
PTPRJ MUTATED 3 4 6
PTPRJ WILD-TYPE 84 76 94
'PTPRJ MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.736 (Fisher's exact test), Q value = 1

Table S11396.  Gene #1068: 'PTPRJ MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
PTPRJ MUTATED 2 6 6
PTPRJ WILD-TYPE 87 154 132
'PTPRJ MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.101 (Fisher's exact test), Q value = 0.35

Table S11397.  Gene #1068: 'PTPRJ MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
PTPRJ MUTATED 10 4 0
PTPRJ WILD-TYPE 172 129 72
'PTPRJ MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.306 (Fisher's exact test), Q value = 0.64

Table S11398.  Gene #1068: 'PTPRJ MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
PTPRJ MUTATED 4 4 6 4
PTPRJ WILD-TYPE 108 92 86 182
'PTPRJ MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00753 (Fisher's exact test), Q value = 0.081

Table S11399.  Gene #1068: 'PTPRJ MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
PTPRJ MUTATED 3 3 4 0 5 0 3
PTPRJ WILD-TYPE 57 47 45 40 58 125 96

Figure S3047.  Get High-res Image Gene #1068: 'PTPRJ MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'PTPRJ MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.4 (Fisher's exact test), Q value = 0.73

Table S11400.  Gene #1068: 'PTPRJ MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
PTPRJ MUTATED 8 3 1 6
PTPRJ WILD-TYPE 122 75 67 190
'PTPRJ MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0533 (Fisher's exact test), Q value = 0.25

Table S11401.  Gene #1068: 'PTPRJ MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
PTPRJ MUTATED 2 6 0 3 5 0 1 1 0
PTPRJ WILD-TYPE 38 56 28 77 64 48 42 27 74
'PTPRJ MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S11402.  Gene #1068: 'PTPRJ MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
PTPRJ MUTATED 2 2 1 1
PTPRJ WILD-TYPE 31 29 26 18
'PTPRJ MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S11403.  Gene #1068: 'PTPRJ MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
PTPRJ MUTATED 4 0 1 1
PTPRJ WILD-TYPE 50 10 23 21
'WDR5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.441 (Fisher's exact test), Q value = 0.77

Table S11404.  Gene #1069: 'WDR5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
WDR5 MUTATED 4 2 0 0
WDR5 WILD-TYPE 174 181 101 20
'WDR5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.327 (Fisher's exact test), Q value = 0.66

Table S11405.  Gene #1069: 'WDR5 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
WDR5 MUTATED 3 0 2
WDR5 WILD-TYPE 84 80 98
'WDR5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.765 (Fisher's exact test), Q value = 1

Table S11406.  Gene #1069: 'WDR5 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
WDR5 MUTATED 2 2 2
WDR5 WILD-TYPE 87 158 136
'WDR5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.412 (Fisher's exact test), Q value = 0.74

Table S11407.  Gene #1069: 'WDR5 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
WDR5 MUTATED 3 1 2
WDR5 WILD-TYPE 179 132 70
'WDR5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.436 (Fisher's exact test), Q value = 0.76

Table S11408.  Gene #1069: 'WDR5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
WDR5 MUTATED 1 2 2 1
WDR5 WILD-TYPE 111 94 90 185
'WDR5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0567 (Fisher's exact test), Q value = 0.26

Table S11409.  Gene #1069: 'WDR5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
WDR5 MUTATED 1 0 3 0 1 0 1
WDR5 WILD-TYPE 59 50 46 40 62 125 98
'WDR5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.186 (Fisher's exact test), Q value = 0.49

Table S11410.  Gene #1069: 'WDR5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
WDR5 MUTATED 4 1 0 1
WDR5 WILD-TYPE 126 77 68 195
'WDR5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.458 (Fisher's exact test), Q value = 0.78

Table S11411.  Gene #1069: 'WDR5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
WDR5 MUTATED 0 2 0 0 2 1 1 0 0
WDR5 WILD-TYPE 40 60 28 80 67 47 42 28 74
'MAP3K4 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00861 (Fisher's exact test), Q value = 0.087

Table S11412.  Gene #1070: 'MAP3K4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
MAP3K4 MUTATED 7 1 1 4
MAP3K4 WILD-TYPE 39 57 63 39

Figure S3048.  Get High-res Image Gene #1070: 'MAP3K4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'MAP3K4 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00853 (Fisher's exact test), Q value = 0.086

Table S11413.  Gene #1070: 'MAP3K4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
MAP3K4 MUTATED 8 3 2
MAP3K4 WILD-TYPE 43 80 75

Figure S3049.  Get High-res Image Gene #1070: 'MAP3K4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'MAP3K4 MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S11414.  Gene #1070: 'MAP3K4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
MAP3K4 MUTATED 31 4 3 0
MAP3K4 WILD-TYPE 147 179 98 20

Figure S3050.  Get High-res Image Gene #1070: 'MAP3K4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'MAP3K4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.413 (Fisher's exact test), Q value = 0.74

Table S11415.  Gene #1070: 'MAP3K4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
MAP3K4 MUTATED 9 4 9
MAP3K4 WILD-TYPE 78 76 91
'MAP3K4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.667 (Fisher's exact test), Q value = 0.95

Table S11416.  Gene #1070: 'MAP3K4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
MAP3K4 MUTATED 9 11 12
MAP3K4 WILD-TYPE 80 149 126
'MAP3K4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.712 (Fisher's exact test), Q value = 0.98

Table S11417.  Gene #1070: 'MAP3K4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
MAP3K4 MUTATED 13 12 7
MAP3K4 WILD-TYPE 169 121 65
'MAP3K4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.358 (Fisher's exact test), Q value = 0.69

Table S11418.  Gene #1070: 'MAP3K4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
MAP3K4 MUTATED 5 8 10 16
MAP3K4 WILD-TYPE 107 88 82 170
'MAP3K4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00219 (Fisher's exact test), Q value = 0.04

Table S11419.  Gene #1070: 'MAP3K4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
MAP3K4 MUTATED 3 3 10 1 4 4 14
MAP3K4 WILD-TYPE 57 47 39 39 59 121 85

Figure S3051.  Get High-res Image Gene #1070: 'MAP3K4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'MAP3K4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.405 (Fisher's exact test), Q value = 0.73

Table S11420.  Gene #1070: 'MAP3K4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
MAP3K4 MUTATED 8 7 3 20
MAP3K4 WILD-TYPE 122 71 65 176
'MAP3K4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0445 (Fisher's exact test), Q value = 0.22

Table S11421.  Gene #1070: 'MAP3K4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
MAP3K4 MUTATED 3 5 1 6 14 1 3 2 3
MAP3K4 WILD-TYPE 37 57 27 74 55 47 40 26 71

Figure S3052.  Get High-res Image Gene #1070: 'MAP3K4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'MAP3K4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.027 (Fisher's exact test), Q value = 0.17

Table S11422.  Gene #1070: 'MAP3K4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
MAP3K4 MUTATED 1 2 0 4
MAP3K4 WILD-TYPE 32 29 27 15

Figure S3053.  Get High-res Image Gene #1070: 'MAP3K4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'MAP3K4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.547 (Fisher's exact test), Q value = 0.87

Table S11423.  Gene #1070: 'MAP3K4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
MAP3K4 MUTATED 5 0 2 0
MAP3K4 WILD-TYPE 49 10 22 22
'KRTAP5-3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.46 (Fisher's exact test), Q value = 0.79

Table S11424.  Gene #1071: 'KRTAP5-3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
KRTAP5-3 MUTATED 1 1 2 0
KRTAP5-3 WILD-TYPE 177 182 99 20
'KRTAP5-3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S11425.  Gene #1071: 'KRTAP5-3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
KRTAP5-3 MUTATED 1 1 1
KRTAP5-3 WILD-TYPE 86 79 99
'KRTAP5-3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.339 (Fisher's exact test), Q value = 0.67

Table S11426.  Gene #1071: 'KRTAP5-3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
KRTAP5-3 MUTATED 1 0 2
KRTAP5-3 WILD-TYPE 88 160 136
'KRTAP5-3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.299 (Fisher's exact test), Q value = 0.63

Table S11427.  Gene #1071: 'KRTAP5-3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
KRTAP5-3 MUTATED 3 0 0
KRTAP5-3 WILD-TYPE 179 133 72
'KRTAP5-3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.374 (Fisher's exact test), Q value = 0.7

Table S11428.  Gene #1071: 'KRTAP5-3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
KRTAP5-3 MUTATED 1 0 2 1
KRTAP5-3 WILD-TYPE 111 96 90 185
'KRTAP5-3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0602 (Fisher's exact test), Q value = 0.27

Table S11429.  Gene #1071: 'KRTAP5-3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
KRTAP5-3 MUTATED 0 0 0 0 3 0 1
KRTAP5-3 WILD-TYPE 60 50 49 40 60 125 98
'KRTAP5-3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.342 (Fisher's exact test), Q value = 0.67

Table S11430.  Gene #1071: 'KRTAP5-3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
KRTAP5-3 MUTATED 1 2 0 1
KRTAP5-3 WILD-TYPE 129 76 68 195
'KRTAP5-3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.236 (Fisher's exact test), Q value = 0.56

Table S11431.  Gene #1071: 'KRTAP5-3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
KRTAP5-3 MUTATED 0 2 1 0 1 0 0 0 0
KRTAP5-3 WILD-TYPE 40 60 27 80 68 48 43 28 74
'CPS1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0206 (Fisher's exact test), Q value = 0.14

Table S11432.  Gene #1072: 'CPS1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
CPS1 MUTATED 6 1 1 4
CPS1 WILD-TYPE 40 57 63 39

Figure S3054.  Get High-res Image Gene #1072: 'CPS1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'CPS1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.385 (Fisher's exact test), Q value = 0.71

Table S11433.  Gene #1072: 'CPS1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
CPS1 MUTATED 5 4 3
CPS1 WILD-TYPE 46 79 74
'CPS1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0452 (Fisher's exact test), Q value = 0.23

Table S11434.  Gene #1072: 'CPS1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
CPS1 MUTATED 20 8 4 1
CPS1 WILD-TYPE 158 175 97 19

Figure S3055.  Get High-res Image Gene #1072: 'CPS1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'CPS1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.644 (Fisher's exact test), Q value = 0.93

Table S11435.  Gene #1072: 'CPS1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
CPS1 MUTATED 9 5 8
CPS1 WILD-TYPE 78 75 92
'CPS1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00753 (Fisher's exact test), Q value = 0.081

Table S11436.  Gene #1072: 'CPS1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
CPS1 MUTATED 1 12 16
CPS1 WILD-TYPE 88 148 122

Figure S3056.  Get High-res Image Gene #1072: 'CPS1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'CPS1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.67 (Fisher's exact test), Q value = 0.95

Table S11437.  Gene #1072: 'CPS1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
CPS1 MUTATED 13 12 4
CPS1 WILD-TYPE 169 121 68
'CPS1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.318 (Fisher's exact test), Q value = 0.65

Table S11438.  Gene #1072: 'CPS1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
CPS1 MUTATED 6 11 6 11
CPS1 WILD-TYPE 106 85 86 175
'CPS1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0152 (Fisher's exact test), Q value = 0.12

Table S11439.  Gene #1072: 'CPS1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
CPS1 MUTATED 5 3 8 3 3 2 10
CPS1 WILD-TYPE 55 47 41 37 60 123 89

Figure S3057.  Get High-res Image Gene #1072: 'CPS1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CPS1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.51 (Fisher's exact test), Q value = 0.83

Table S11440.  Gene #1072: 'CPS1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
CPS1 MUTATED 13 4 4 12
CPS1 WILD-TYPE 117 74 64 184
'CPS1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.09 (Fisher's exact test), Q value = 0.33

Table S11441.  Gene #1072: 'CPS1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
CPS1 MUTATED 3 4 5 4 9 1 4 1 2
CPS1 WILD-TYPE 37 58 23 76 60 47 39 27 72
'CPS1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0906 (Fisher's exact test), Q value = 0.33

Table S11442.  Gene #1072: 'CPS1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
CPS1 MUTATED 2 0 1 3
CPS1 WILD-TYPE 31 31 26 16
'CPS1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.922 (Fisher's exact test), Q value = 1

Table S11443.  Gene #1072: 'CPS1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
CPS1 MUTATED 3 0 2 1
CPS1 WILD-TYPE 51 10 22 21
'MDN1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 4e-05 (Fisher's exact test), Q value = 0.0027

Table S11444.  Gene #1073: 'MDN1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
MDN1 MUTATED 13 1 3 7
MDN1 WILD-TYPE 33 57 61 36

Figure S3058.  Get High-res Image Gene #1073: 'MDN1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'MDN1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 3e-05 (Fisher's exact test), Q value = 0.0022

Table S11445.  Gene #1073: 'MDN1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
MDN1 MUTATED 16 4 4
MDN1 WILD-TYPE 35 79 73

Figure S3059.  Get High-res Image Gene #1073: 'MDN1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'MDN1 MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S11446.  Gene #1073: 'MDN1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
MDN1 MUTATED 41 9 5 1
MDN1 WILD-TYPE 137 174 96 19

Figure S3060.  Get High-res Image Gene #1073: 'MDN1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'MDN1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.118 (Fisher's exact test), Q value = 0.38

Table S11447.  Gene #1073: 'MDN1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
MDN1 MUTATED 11 5 16
MDN1 WILD-TYPE 76 75 84
'MDN1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0253 (Fisher's exact test), Q value = 0.16

Table S11448.  Gene #1073: 'MDN1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
MDN1 MUTATED 5 15 23
MDN1 WILD-TYPE 84 145 115

Figure S3061.  Get High-res Image Gene #1073: 'MDN1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'MDN1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.953 (Fisher's exact test), Q value = 1

Table S11449.  Gene #1073: 'MDN1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
MDN1 MUTATED 21 15 7
MDN1 WILD-TYPE 161 118 65
'MDN1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0199 (Fisher's exact test), Q value = 0.14

Table S11450.  Gene #1073: 'MDN1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
MDN1 MUTATED 7 19 8 23
MDN1 WILD-TYPE 105 77 84 163

Figure S3062.  Get High-res Image Gene #1073: 'MDN1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'MDN1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 5e-05 (Fisher's exact test), Q value = 0.0032

Table S11451.  Gene #1073: 'MDN1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
MDN1 MUTATED 4 10 12 4 3 5 19
MDN1 WILD-TYPE 56 40 37 36 60 120 80

Figure S3063.  Get High-res Image Gene #1073: 'MDN1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'MDN1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0152 (Fisher's exact test), Q value = 0.12

Table S11452.  Gene #1073: 'MDN1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
MDN1 MUTATED 19 3 4 29
MDN1 WILD-TYPE 111 75 64 167

Figure S3064.  Get High-res Image Gene #1073: 'MDN1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'MDN1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00011 (Fisher's exact test), Q value = 0.0056

Table S11453.  Gene #1073: 'MDN1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
MDN1 MUTATED 6 6 3 3 19 1 8 4 5
MDN1 WILD-TYPE 34 56 25 77 50 47 35 24 69

Figure S3065.  Get High-res Image Gene #1073: 'MDN1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'MDN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00185 (Fisher's exact test), Q value = 0.036

Table S11454.  Gene #1073: 'MDN1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
MDN1 MUTATED 3 1 0 6
MDN1 WILD-TYPE 30 30 27 13

Figure S3066.  Get High-res Image Gene #1073: 'MDN1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'MDN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.248 (Fisher's exact test), Q value = 0.57

Table S11455.  Gene #1073: 'MDN1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
MDN1 MUTATED 7 0 3 0
MDN1 WILD-TYPE 47 10 21 22
'COCH MUTATION STATUS' versus 'CN_CNMF'

P value = 0.285 (Fisher's exact test), Q value = 0.61

Table S11456.  Gene #1074: 'COCH MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
COCH MUTATED 5 2 0 0
COCH WILD-TYPE 173 181 101 20
'COCH MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.388 (Fisher's exact test), Q value = 0.72

Table S11457.  Gene #1074: 'COCH MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
COCH MUTATED 1 0 3
COCH WILD-TYPE 86 80 97
'COCH MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S11458.  Gene #1074: 'COCH MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
COCH MUTATED 1 2 2
COCH WILD-TYPE 88 158 136
'COCH MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.852 (Fisher's exact test), Q value = 1

Table S11459.  Gene #1074: 'COCH MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
COCH MUTATED 3 1 1
COCH WILD-TYPE 179 132 71
'COCH MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.568 (Fisher's exact test), Q value = 0.88

Table S11460.  Gene #1074: 'COCH MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
COCH MUTATED 1 1 3 2
COCH WILD-TYPE 111 95 89 184
'COCH MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.578 (Fisher's exact test), Q value = 0.88

Table S11461.  Gene #1074: 'COCH MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
COCH MUTATED 1 2 0 1 1 1 1
COCH WILD-TYPE 59 48 49 39 62 124 98
'COCH MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.384 (Fisher's exact test), Q value = 0.71

Table S11462.  Gene #1074: 'COCH MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
COCH MUTATED 4 1 0 2
COCH WILD-TYPE 126 77 68 194
'COCH MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0599 (Fisher's exact test), Q value = 0.27

Table S11463.  Gene #1074: 'COCH MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
COCH MUTATED 2 1 0 2 0 0 0 2 0
COCH WILD-TYPE 38 61 28 78 69 48 43 26 74
'MFSD9 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.065 (Fisher's exact test), Q value = 0.28

Table S11464.  Gene #1075: 'MFSD9 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
MFSD9 MUTATED 1 0 0 2
MFSD9 WILD-TYPE 45 58 64 41
'MFSD9 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S11465.  Gene #1075: 'MFSD9 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
MFSD9 MUTATED 1 1 1
MFSD9 WILD-TYPE 50 82 76
'MFSD9 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0472 (Fisher's exact test), Q value = 0.23

Table S11466.  Gene #1075: 'MFSD9 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
MFSD9 MUTATED 9 1 2 0
MFSD9 WILD-TYPE 169 182 99 20

Figure S3067.  Get High-res Image Gene #1075: 'MFSD9 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'MFSD9 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0777 (Fisher's exact test), Q value = 0.3

Table S11467.  Gene #1075: 'MFSD9 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
MFSD9 MUTATED 3 0 6
MFSD9 WILD-TYPE 84 80 94
'MFSD9 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.511 (Fisher's exact test), Q value = 0.83

Table S11468.  Gene #1075: 'MFSD9 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
MFSD9 MUTATED 1 3 5
MFSD9 WILD-TYPE 88 157 133
'MFSD9 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S11469.  Gene #1075: 'MFSD9 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
MFSD9 MUTATED 5 3 1
MFSD9 WILD-TYPE 177 130 71
'MFSD9 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.168 (Fisher's exact test), Q value = 0.46

Table S11470.  Gene #1075: 'MFSD9 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
MFSD9 MUTATED 2 5 3 2
MFSD9 WILD-TYPE 110 91 89 184
'MFSD9 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00317 (Fisher's exact test), Q value = 0.05

Table S11471.  Gene #1075: 'MFSD9 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
MFSD9 MUTATED 1 2 6 0 0 1 2
MFSD9 WILD-TYPE 59 48 43 40 63 124 97

Figure S3068.  Get High-res Image Gene #1075: 'MFSD9 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'MFSD9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.248 (Fisher's exact test), Q value = 0.57

Table S11472.  Gene #1075: 'MFSD9 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
MFSD9 MUTATED 6 1 0 5
MFSD9 WILD-TYPE 124 77 68 191
'MFSD9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.595 (Fisher's exact test), Q value = 0.9

Table S11473.  Gene #1075: 'MFSD9 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
MFSD9 MUTATED 1 2 1 3 4 0 0 0 1
MFSD9 WILD-TYPE 39 60 27 77 65 48 43 28 73
'MFSD9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.485 (Fisher's exact test), Q value = 0.81

Table S11474.  Gene #1075: 'MFSD9 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
MFSD9 MUTATED 2 0 1 0
MFSD9 WILD-TYPE 31 31 26 19
'MFSD9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S11475.  Gene #1075: 'MFSD9 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
MFSD9 MUTATED 2 0 1 0
MFSD9 WILD-TYPE 52 10 23 22
'HSPA4L MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0225 (Fisher's exact test), Q value = 0.15

Table S11476.  Gene #1076: 'HSPA4L MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
HSPA4L MUTATED 2 0 0 3
HSPA4L WILD-TYPE 44 58 64 40

Figure S3069.  Get High-res Image Gene #1076: 'HSPA4L MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'HSPA4L MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0457 (Fisher's exact test), Q value = 0.23

Table S11477.  Gene #1076: 'HSPA4L MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
HSPA4L MUTATED 3 0 2
HSPA4L WILD-TYPE 48 83 75

Figure S3070.  Get High-res Image Gene #1076: 'HSPA4L MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'HSPA4L MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0819 (Fisher's exact test), Q value = 0.31

Table S11478.  Gene #1076: 'HSPA4L MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
HSPA4L MUTATED 9 2 1 0
HSPA4L WILD-TYPE 169 181 100 20
'HSPA4L MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S11479.  Gene #1076: 'HSPA4L MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
HSPA4L MUTATED 2 2 3
HSPA4L WILD-TYPE 85 78 97
'HSPA4L MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S11480.  Gene #1076: 'HSPA4L MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
HSPA4L MUTATED 2 4 3
HSPA4L WILD-TYPE 87 156 135
'HSPA4L MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S11481.  Gene #1076: 'HSPA4L MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
HSPA4L MUTATED 5 3 1
HSPA4L WILD-TYPE 177 130 71
'HSPA4L MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S11482.  Gene #1076: 'HSPA4L MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
HSPA4L MUTATED 3 2 2 5
HSPA4L WILD-TYPE 109 94 90 181
'HSPA4L MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0962 (Fisher's exact test), Q value = 0.34

Table S11483.  Gene #1076: 'HSPA4L MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
HSPA4L MUTATED 3 1 1 0 3 0 4
HSPA4L WILD-TYPE 57 49 48 40 60 125 95
'HSPA4L MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.826 (Fisher's exact test), Q value = 1

Table S11484.  Gene #1076: 'HSPA4L MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
HSPA4L MUTATED 2 2 2 6
HSPA4L WILD-TYPE 128 76 66 190
'HSPA4L MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.236 (Fisher's exact test), Q value = 0.56

Table S11485.  Gene #1076: 'HSPA4L MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
HSPA4L MUTATED 0 3 1 1 5 0 1 0 1
HSPA4L WILD-TYPE 40 59 27 79 64 48 42 28 73
'TMTC4 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.372 (Fisher's exact test), Q value = 0.7

Table S11486.  Gene #1077: 'TMTC4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
TMTC4 MUTATED 2 1 0 1
TMTC4 WILD-TYPE 44 57 64 42
'TMTC4 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.555 (Fisher's exact test), Q value = 0.87

Table S11487.  Gene #1077: 'TMTC4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
TMTC4 MUTATED 2 1 1
TMTC4 WILD-TYPE 49 82 76
'TMTC4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.187 (Fisher's exact test), Q value = 0.49

Table S11488.  Gene #1077: 'TMTC4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
TMTC4 MUTATED 9 4 1 1
TMTC4 WILD-TYPE 169 179 100 19
'TMTC4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.74 (Fisher's exact test), Q value = 1

Table S11489.  Gene #1077: 'TMTC4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
TMTC4 MUTATED 4 2 5
TMTC4 WILD-TYPE 83 78 95
'TMTC4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.453 (Fisher's exact test), Q value = 0.78

Table S11490.  Gene #1077: 'TMTC4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
TMTC4 MUTATED 4 3 5
TMTC4 WILD-TYPE 85 157 133
'TMTC4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.395 (Fisher's exact test), Q value = 0.72

Table S11491.  Gene #1077: 'TMTC4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
TMTC4 MUTATED 7 2 3
TMTC4 WILD-TYPE 175 131 69
'TMTC4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.511 (Fisher's exact test), Q value = 0.83

Table S11492.  Gene #1077: 'TMTC4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
TMTC4 MUTATED 3 3 5 4
TMTC4 WILD-TYPE 109 93 87 182
'TMTC4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.197 (Fisher's exact test), Q value = 0.5

Table S11493.  Gene #1077: 'TMTC4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
TMTC4 MUTATED 3 3 3 0 2 1 3
TMTC4 WILD-TYPE 57 47 46 40 61 124 96
'TMTC4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.541 (Fisher's exact test), Q value = 0.86

Table S11494.  Gene #1077: 'TMTC4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
TMTC4 MUTATED 6 3 2 4
TMTC4 WILD-TYPE 124 75 66 192
'TMTC4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.212 (Fisher's exact test), Q value = 0.52

Table S11495.  Gene #1077: 'TMTC4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
TMTC4 MUTATED 3 3 1 3 4 0 1 0 0
TMTC4 WILD-TYPE 37 59 27 77 65 48 42 28 74
'TMTC4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.146 (Fisher's exact test), Q value = 0.43

Table S11496.  Gene #1077: 'TMTC4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
TMTC4 MUTATED 3 0 2 3
TMTC4 WILD-TYPE 30 31 25 16
'TMTC4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.95 (Fisher's exact test), Q value = 1

Table S11497.  Gene #1077: 'TMTC4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
TMTC4 MUTATED 5 0 2 1
TMTC4 WILD-TYPE 49 10 22 21
'TGIF1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.487 (Fisher's exact test), Q value = 0.81

Table S11498.  Gene #1078: 'TGIF1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
TGIF1 MUTATED 1 0 2 0
TGIF1 WILD-TYPE 45 58 62 43
'TGIF1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0609 (Fisher's exact test), Q value = 0.27

Table S11499.  Gene #1078: 'TGIF1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
TGIF1 MUTATED 0 0 3
TGIF1 WILD-TYPE 51 83 74
'TGIF1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.281 (Fisher's exact test), Q value = 0.61

Table S11500.  Gene #1078: 'TGIF1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
TGIF1 MUTATED 6 2 2 1
TGIF1 WILD-TYPE 172 181 99 19
'TGIF1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.739 (Fisher's exact test), Q value = 1

Table S11501.  Gene #1078: 'TGIF1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
TGIF1 MUTATED 3 3 2
TGIF1 WILD-TYPE 84 77 98
'TGIF1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.243 (Fisher's exact test), Q value = 0.57

Table S11502.  Gene #1078: 'TGIF1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
TGIF1 MUTATED 1 7 2
TGIF1 WILD-TYPE 88 153 136
'TGIF1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.485 (Fisher's exact test), Q value = 0.81

Table S11503.  Gene #1078: 'TGIF1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
TGIF1 MUTATED 3 5 2
TGIF1 WILD-TYPE 179 128 70
'TGIF1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.772 (Fisher's exact test), Q value = 1

Table S11504.  Gene #1078: 'TGIF1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
TGIF1 MUTATED 3 1 3 4
TGIF1 WILD-TYPE 109 95 89 182
'TGIF1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.303 (Fisher's exact test), Q value = 0.63

Table S11505.  Gene #1078: 'TGIF1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
TGIF1 MUTATED 4 1 1 1 0 3 1
TGIF1 WILD-TYPE 56 49 48 39 63 122 98
'TGIF1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.826 (Fisher's exact test), Q value = 1

Table S11506.  Gene #1078: 'TGIF1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
TGIF1 MUTATED 2 2 1 6
TGIF1 WILD-TYPE 128 76 67 190
'TGIF1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.392 (Fisher's exact test), Q value = 0.72

Table S11507.  Gene #1078: 'TGIF1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
TGIF1 MUTATED 2 1 0 1 0 3 1 1 2
TGIF1 WILD-TYPE 38 61 28 79 69 45 42 27 72
'TBL1XR1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0273 (Fisher's exact test), Q value = 0.17

Table S11508.  Gene #1079: 'TBL1XR1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
TBL1XR1 MUTATED 3 0 0 2
TBL1XR1 WILD-TYPE 43 58 64 41

Figure S3071.  Get High-res Image Gene #1079: 'TBL1XR1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'TBL1XR1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0878 (Fisher's exact test), Q value = 0.32

Table S11509.  Gene #1079: 'TBL1XR1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
TBL1XR1 MUTATED 3 2 0
TBL1XR1 WILD-TYPE 48 81 77
'TBL1XR1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00757 (Fisher's exact test), Q value = 0.081

Table S11510.  Gene #1079: 'TBL1XR1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
TBL1XR1 MUTATED 11 2 0 0
TBL1XR1 WILD-TYPE 167 181 101 20

Figure S3072.  Get High-res Image Gene #1079: 'TBL1XR1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'TBL1XR1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.141 (Fisher's exact test), Q value = 0.42

Table S11511.  Gene #1079: 'TBL1XR1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
TBL1XR1 MUTATED 5 1 1
TBL1XR1 WILD-TYPE 82 79 99
'TBL1XR1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.777 (Fisher's exact test), Q value = 1

Table S11512.  Gene #1079: 'TBL1XR1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
TBL1XR1 MUTATED 3 3 4
TBL1XR1 WILD-TYPE 86 157 134
'TBL1XR1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.917 (Fisher's exact test), Q value = 1

Table S11513.  Gene #1079: 'TBL1XR1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
TBL1XR1 MUTATED 5 4 1
TBL1XR1 WILD-TYPE 177 129 71
'TBL1XR1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.108 (Fisher's exact test), Q value = 0.36

Table S11514.  Gene #1079: 'TBL1XR1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
TBL1XR1 MUTATED 0 2 4 7
TBL1XR1 WILD-TYPE 112 94 88 179
'TBL1XR1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0593 (Fisher's exact test), Q value = 0.27

Table S11515.  Gene #1079: 'TBL1XR1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
TBL1XR1 MUTATED 0 0 3 1 2 1 6
TBL1XR1 WILD-TYPE 60 50 46 39 61 124 93
'TBL1XR1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.303 (Fisher's exact test), Q value = 0.63

Table S11516.  Gene #1079: 'TBL1XR1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
TBL1XR1 MUTATED 2 3 0 7
TBL1XR1 WILD-TYPE 128 75 68 189
'TBL1XR1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.221 (Fisher's exact test), Q value = 0.54

Table S11517.  Gene #1079: 'TBL1XR1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
TBL1XR1 MUTATED 1 5 1 1 2 0 0 1 1
TBL1XR1 WILD-TYPE 39 57 27 79 67 48 43 27 73
'NXF3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.743 (Fisher's exact test), Q value = 1

Table S11518.  Gene #1080: 'NXF3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
NXF3 MUTATED 6 3 3 0
NXF3 WILD-TYPE 172 180 98 20
'NXF3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.133 (Fisher's exact test), Q value = 0.41

Table S11519.  Gene #1080: 'NXF3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
NXF3 MUTATED 4 5 1
NXF3 WILD-TYPE 83 75 99
'NXF3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.177 (Fisher's exact test), Q value = 0.48

Table S11520.  Gene #1080: 'NXF3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
NXF3 MUTATED 0 3 5
NXF3 WILD-TYPE 89 157 133
'NXF3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.564 (Fisher's exact test), Q value = 0.87

Table S11521.  Gene #1080: 'NXF3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
NXF3 MUTATED 5 3 0
NXF3 WILD-TYPE 177 130 72
'NXF3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.103 (Fisher's exact test), Q value = 0.36

Table S11522.  Gene #1080: 'NXF3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
NXF3 MUTATED 6 1 3 2
NXF3 WILD-TYPE 106 95 89 184
'NXF3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00011 (Fisher's exact test), Q value = 0.0056

Table S11523.  Gene #1080: 'NXF3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
NXF3 MUTATED 7 0 3 0 1 0 1
NXF3 WILD-TYPE 53 50 46 40 62 125 98

Figure S3073.  Get High-res Image Gene #1080: 'NXF3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'NXF3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.547 (Fisher's exact test), Q value = 0.87

Table S11524.  Gene #1080: 'NXF3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
NXF3 MUTATED 4 2 3 3
NXF3 WILD-TYPE 126 76 65 193
'NXF3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.146 (Fisher's exact test), Q value = 0.43

Table S11525.  Gene #1080: 'NXF3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
NXF3 MUTATED 1 2 2 1 4 0 2 0 0
NXF3 WILD-TYPE 39 60 26 79 65 48 41 28 74
'SBNO1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0367 (Fisher's exact test), Q value = 0.2

Table S11526.  Gene #1081: 'SBNO1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
SBNO1 MUTATED 1 0 1 4
SBNO1 WILD-TYPE 45 58 63 39

Figure S3074.  Get High-res Image Gene #1081: 'SBNO1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'SBNO1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.88 (Fisher's exact test), Q value = 1

Table S11527.  Gene #1081: 'SBNO1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
SBNO1 MUTATED 2 2 2
SBNO1 WILD-TYPE 49 81 75
'SBNO1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0461 (Fisher's exact test), Q value = 0.23

Table S11528.  Gene #1081: 'SBNO1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
SBNO1 MUTATED 11 2 5 0
SBNO1 WILD-TYPE 167 181 96 20

Figure S3075.  Get High-res Image Gene #1081: 'SBNO1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'SBNO1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0991 (Fisher's exact test), Q value = 0.35

Table S11529.  Gene #1081: 'SBNO1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
SBNO1 MUTATED 7 1 4
SBNO1 WILD-TYPE 80 79 96
'SBNO1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.144 (Fisher's exact test), Q value = 0.42

Table S11530.  Gene #1081: 'SBNO1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
SBNO1 MUTATED 1 6 9
SBNO1 WILD-TYPE 88 154 129
'SBNO1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.591 (Fisher's exact test), Q value = 0.9

Table S11531.  Gene #1081: 'SBNO1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
SBNO1 MUTATED 8 4 4
SBNO1 WILD-TYPE 174 129 68
'SBNO1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.36 (Fisher's exact test), Q value = 0.69

Table S11532.  Gene #1081: 'SBNO1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
SBNO1 MUTATED 2 6 4 6
SBNO1 WILD-TYPE 110 90 88 180
'SBNO1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00543 (Fisher's exact test), Q value = 0.067

Table S11533.  Gene #1081: 'SBNO1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
SBNO1 MUTATED 1 2 7 0 3 1 4
SBNO1 WILD-TYPE 59 48 42 40 60 124 95

Figure S3076.  Get High-res Image Gene #1081: 'SBNO1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'SBNO1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.724 (Fisher's exact test), Q value = 0.99

Table S11534.  Gene #1081: 'SBNO1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
SBNO1 MUTATED 5 4 1 8
SBNO1 WILD-TYPE 125 74 67 188
'SBNO1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0159 (Fisher's exact test), Q value = 0.13

Table S11535.  Gene #1081: 'SBNO1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
SBNO1 MUTATED 2 4 3 0 6 0 1 1 1
SBNO1 WILD-TYPE 38 58 25 80 63 48 42 27 73

Figure S3077.  Get High-res Image Gene #1081: 'SBNO1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'SBNO1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.073 (Fisher's exact test), Q value = 0.29

Table S11536.  Gene #1081: 'SBNO1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
SBNO1 MUTATED 1 0 1 3
SBNO1 WILD-TYPE 32 31 26 16
'SBNO1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.575 (Fisher's exact test), Q value = 0.88

Table S11537.  Gene #1081: 'SBNO1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
SBNO1 MUTATED 3 0 2 0
SBNO1 WILD-TYPE 51 10 22 22
'FLT1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00239 (Fisher's exact test), Q value = 0.042

Table S11538.  Gene #1082: 'FLT1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
FLT1 MUTATED 6 1 0 4
FLT1 WILD-TYPE 40 57 64 39

Figure S3078.  Get High-res Image Gene #1082: 'FLT1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'FLT1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00896 (Fisher's exact test), Q value = 0.088

Table S11539.  Gene #1082: 'FLT1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
FLT1 MUTATED 7 1 3
FLT1 WILD-TYPE 44 82 74

Figure S3079.  Get High-res Image Gene #1082: 'FLT1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'FLT1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0351 (Fisher's exact test), Q value = 0.19

Table S11540.  Gene #1082: 'FLT1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
FLT1 MUTATED 21 10 4 0
FLT1 WILD-TYPE 157 173 97 20

Figure S3080.  Get High-res Image Gene #1082: 'FLT1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'FLT1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.962 (Fisher's exact test), Q value = 1

Table S11541.  Gene #1082: 'FLT1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
FLT1 MUTATED 8 7 8
FLT1 WILD-TYPE 79 73 92
'FLT1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.208 (Fisher's exact test), Q value = 0.52

Table S11542.  Gene #1082: 'FLT1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
FLT1 MUTATED 3 10 13
FLT1 WILD-TYPE 86 150 125
'FLT1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.896 (Fisher's exact test), Q value = 1

Table S11543.  Gene #1082: 'FLT1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
FLT1 MUTATED 12 10 4
FLT1 WILD-TYPE 170 123 68
'FLT1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.548 (Fisher's exact test), Q value = 0.87

Table S11544.  Gene #1082: 'FLT1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
FLT1 MUTATED 10 9 5 11
FLT1 WILD-TYPE 102 87 87 175
'FLT1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0159 (Fisher's exact test), Q value = 0.13

Table S11545.  Gene #1082: 'FLT1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
FLT1 MUTATED 6 5 5 4 5 1 9
FLT1 WILD-TYPE 54 45 44 36 58 124 90

Figure S3081.  Get High-res Image Gene #1082: 'FLT1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'FLT1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.895 (Fisher's exact test), Q value = 1

Table S11546.  Gene #1082: 'FLT1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
FLT1 MUTATED 9 7 4 13
FLT1 WILD-TYPE 121 71 64 183
'FLT1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.21 (Fisher's exact test), Q value = 0.52

Table S11547.  Gene #1082: 'FLT1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
FLT1 MUTATED 3 7 2 6 8 1 3 2 1
FLT1 WILD-TYPE 37 55 26 74 61 47 40 26 73
'FLT1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.595 (Fisher's exact test), Q value = 0.9

Table S11548.  Gene #1082: 'FLT1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
FLT1 MUTATED 1 1 2 2
FLT1 WILD-TYPE 32 30 25 17
'FLT1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.182 (Fisher's exact test), Q value = 0.48

Table S11549.  Gene #1082: 'FLT1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
FLT1 MUTATED 3 2 1 0
FLT1 WILD-TYPE 51 8 23 22
'NCL MUTATION STATUS' versus 'CN_CNMF'

P value = 0.715 (Fisher's exact test), Q value = 0.99

Table S11550.  Gene #1083: 'NCL MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
NCL MUTATED 6 5 1 0
NCL WILD-TYPE 172 178 100 20
'NCL MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.788 (Fisher's exact test), Q value = 1

Table S11551.  Gene #1083: 'NCL MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
NCL MUTATED 3 4 3
NCL WILD-TYPE 84 76 97
'NCL MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S11552.  Gene #1083: 'NCL MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
NCL MUTATED 2 4 3
NCL WILD-TYPE 87 156 135
'NCL MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.91 (Fisher's exact test), Q value = 1

Table S11553.  Gene #1083: 'NCL MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
NCL MUTATED 4 3 2
NCL WILD-TYPE 178 130 70
'NCL MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.659 (Fisher's exact test), Q value = 0.95

Table S11554.  Gene #1083: 'NCL MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
NCL MUTATED 4 2 3 3
NCL WILD-TYPE 108 94 89 183
'NCL MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0534 (Fisher's exact test), Q value = 0.25

Table S11555.  Gene #1083: 'NCL MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
NCL MUTATED 4 0 3 1 0 1 3
NCL WILD-TYPE 56 50 46 39 63 124 96
'NCL MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.575 (Fisher's exact test), Q value = 0.88

Table S11556.  Gene #1083: 'NCL MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
NCL MUTATED 5 2 1 3
NCL WILD-TYPE 125 76 67 193
'NCL MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.511 (Fisher's exact test), Q value = 0.83

Table S11557.  Gene #1083: 'NCL MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
NCL MUTATED 3 1 0 2 3 0 1 0 1
NCL WILD-TYPE 37 61 28 78 66 48 42 28 73
'NCL MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.698 (Fisher's exact test), Q value = 0.97

Table S11558.  Gene #1083: 'NCL MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
NCL MUTATED 2 1 0 1
NCL WILD-TYPE 31 30 27 18
'NCL MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.868 (Fisher's exact test), Q value = 1

Table S11559.  Gene #1083: 'NCL MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
NCL MUTATED 3 0 1 0
NCL WILD-TYPE 51 10 23 22
'SMC1B MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00493 (Fisher's exact test), Q value = 0.063

Table S11560.  Gene #1084: 'SMC1B MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
SMC1B MUTATED 4 0 0 3
SMC1B WILD-TYPE 42 58 64 40

Figure S3082.  Get High-res Image Gene #1084: 'SMC1B MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'SMC1B MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.549 (Fisher's exact test), Q value = 0.87

Table S11561.  Gene #1084: 'SMC1B MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
SMC1B MUTATED 3 2 2
SMC1B WILD-TYPE 48 81 75
'SMC1B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00037 (Fisher's exact test), Q value = 0.013

Table S11562.  Gene #1084: 'SMC1B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
SMC1B MUTATED 18 3 1 0
SMC1B WILD-TYPE 160 180 100 20

Figure S3083.  Get High-res Image Gene #1084: 'SMC1B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'SMC1B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0362 (Fisher's exact test), Q value = 0.2

Table S11563.  Gene #1084: 'SMC1B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
SMC1B MUTATED 9 1 6
SMC1B WILD-TYPE 78 79 94

Figure S3084.  Get High-res Image Gene #1084: 'SMC1B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'SMC1B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.793 (Fisher's exact test), Q value = 1

Table S11564.  Gene #1084: 'SMC1B MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
SMC1B MUTATED 3 9 7
SMC1B WILD-TYPE 86 151 131
'SMC1B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.523 (Fisher's exact test), Q value = 0.84

Table S11565.  Gene #1084: 'SMC1B MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
SMC1B MUTATED 7 7 5
SMC1B WILD-TYPE 175 126 67
'SMC1B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0602 (Fisher's exact test), Q value = 0.27

Table S11566.  Gene #1084: 'SMC1B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
SMC1B MUTATED 1 8 5 8
SMC1B WILD-TYPE 111 88 87 178
'SMC1B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0216 (Fisher's exact test), Q value = 0.15

Table S11567.  Gene #1084: 'SMC1B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
SMC1B MUTATED 1 2 6 3 3 1 6
SMC1B WILD-TYPE 59 48 43 37 60 124 93

Figure S3085.  Get High-res Image Gene #1084: 'SMC1B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'SMC1B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.294 (Fisher's exact test), Q value = 0.62

Table S11568.  Gene #1084: 'SMC1B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
SMC1B MUTATED 4 5 1 12
SMC1B WILD-TYPE 126 73 67 184
'SMC1B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.112 (Fisher's exact test), Q value = 0.37

Table S11569.  Gene #1084: 'SMC1B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
SMC1B MUTATED 1 5 2 2 7 0 3 0 2
SMC1B WILD-TYPE 39 57 26 78 62 48 40 28 72
'SMC1B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0149 (Fisher's exact test), Q value = 0.12

Table S11570.  Gene #1084: 'SMC1B MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
SMC1B MUTATED 2 2 0 5
SMC1B WILD-TYPE 31 29 27 14

Figure S3086.  Get High-res Image Gene #1084: 'SMC1B MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'SMC1B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.835 (Fisher's exact test), Q value = 1

Table S11571.  Gene #1084: 'SMC1B MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
SMC1B MUTATED 6 0 2 1
SMC1B WILD-TYPE 48 10 22 21
'HRSP12 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0644 (Fisher's exact test), Q value = 0.28

Table S11572.  Gene #1085: 'HRSP12 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
HRSP12 MUTATED 1 0 0 2
HRSP12 WILD-TYPE 45 58 64 41
'HRSP12 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S11573.  Gene #1085: 'HRSP12 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
HRSP12 MUTATED 1 1 1
HRSP12 WILD-TYPE 50 82 76
'HRSP12 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0617 (Fisher's exact test), Q value = 0.27

Table S11574.  Gene #1085: 'HRSP12 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
HRSP12 MUTATED 6 0 1 0
HRSP12 WILD-TYPE 172 183 100 20
'HRSP12 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.555 (Fisher's exact test), Q value = 0.87

Table S11575.  Gene #1085: 'HRSP12 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
HRSP12 MUTATED 2 0 2
HRSP12 WILD-TYPE 85 80 98
'HRSP12 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.384 (Fisher's exact test), Q value = 0.71

Table S11576.  Gene #1085: 'HRSP12 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
HRSP12 MUTATED 0 4 2
HRSP12 WILD-TYPE 89 156 136
'HRSP12 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0183 (Fisher's exact test), Q value = 0.14

Table S11577.  Gene #1085: 'HRSP12 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
HRSP12 MUTATED 0 5 1
HRSP12 WILD-TYPE 182 128 71

Figure S3087.  Get High-res Image Gene #1085: 'HRSP12 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'HRSP12 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.139 (Fisher's exact test), Q value = 0.41

Table S11578.  Gene #1085: 'HRSP12 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
HRSP12 MUTATED 0 3 0 4
HRSP12 WILD-TYPE 112 93 92 182
'HRSP12 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.154 (Fisher's exact test), Q value = 0.44

Table S11579.  Gene #1085: 'HRSP12 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
HRSP12 MUTATED 1 2 1 0 0 0 3
HRSP12 WILD-TYPE 59 48 48 40 63 125 96
'HRSP12 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.441 (Fisher's exact test), Q value = 0.77

Table S11580.  Gene #1085: 'HRSP12 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
HRSP12 MUTATED 2 0 0 5
HRSP12 WILD-TYPE 128 78 68 191
'HRSP12 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.442 (Fisher's exact test), Q value = 0.77

Table S11581.  Gene #1085: 'HRSP12 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
HRSP12 MUTATED 0 0 1 1 3 0 0 0 2
HRSP12 WILD-TYPE 40 62 27 79 66 48 43 28 72
'RRS1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.532 (Fisher's exact test), Q value = 0.85

Table S11582.  Gene #1086: 'RRS1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
RRS1 MUTATED 3 1 0 0
RRS1 WILD-TYPE 175 182 101 20
'RRS1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S11583.  Gene #1086: 'RRS1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
RRS1 MUTATED 1 1 2
RRS1 WILD-TYPE 86 79 98
'RRS1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0189 (Fisher's exact test), Q value = 0.14

Table S11584.  Gene #1086: 'RRS1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
RRS1 MUTATED 0 0 4
RRS1 WILD-TYPE 89 160 134

Figure S3088.  Get High-res Image Gene #1086: 'RRS1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'RRS1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.185 (Fisher's exact test), Q value = 0.49

Table S11585.  Gene #1086: 'RRS1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
RRS1 MUTATED 4 0 0
RRS1 WILD-TYPE 178 133 72
'RRS1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.14 (Fisher's exact test), Q value = 0.42

Table S11586.  Gene #1086: 'RRS1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
RRS1 MUTATED 1 1 2 0
RRS1 WILD-TYPE 111 95 90 186
'RRS1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00573 (Fisher's exact test), Q value = 0.069

Table S11587.  Gene #1086: 'RRS1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
RRS1 MUTATED 0 0 3 0 1 0 0
RRS1 WILD-TYPE 60 50 46 40 62 125 99

Figure S3089.  Get High-res Image Gene #1086: 'RRS1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'RRS1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.6 (Fisher's exact test), Q value = 0.9

Table S11588.  Gene #1086: 'RRS1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
RRS1 MUTATED 2 1 0 1
RRS1 WILD-TYPE 128 77 68 195
'RRS1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.443 (Fisher's exact test), Q value = 0.77

Table S11589.  Gene #1086: 'RRS1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
RRS1 MUTATED 1 1 0 0 2 0 0 0 0
RRS1 WILD-TYPE 39 61 28 80 67 48 43 28 74
'CTCF MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.158 (Fisher's exact test), Q value = 0.45

Table S11590.  Gene #1087: 'CTCF MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
CTCF MUTATED 4 1 1 3
CTCF WILD-TYPE 42 57 63 40
'CTCF MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.377 (Fisher's exact test), Q value = 0.71

Table S11591.  Gene #1087: 'CTCF MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
CTCF MUTATED 4 3 2
CTCF WILD-TYPE 47 80 75
'CTCF MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0717 (Fisher's exact test), Q value = 0.29

Table S11592.  Gene #1087: 'CTCF MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
CTCF MUTATED 12 3 3 1
CTCF WILD-TYPE 166 180 98 19
'CTCF MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.194 (Fisher's exact test), Q value = 0.5

Table S11593.  Gene #1087: 'CTCF MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
CTCF MUTATED 6 1 4
CTCF WILD-TYPE 81 79 96
'CTCF MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0781 (Fisher's exact test), Q value = 0.3

Table S11594.  Gene #1087: 'CTCF MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
CTCF MUTATED 1 11 4
CTCF WILD-TYPE 88 149 134
'CTCF MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.306 (Fisher's exact test), Q value = 0.64

Table S11595.  Gene #1087: 'CTCF MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
CTCF MUTATED 5 8 3
CTCF WILD-TYPE 177 125 69
'CTCF MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.194 (Fisher's exact test), Q value = 0.5

Table S11596.  Gene #1087: 'CTCF MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
CTCF MUTATED 2 7 2 8
CTCF WILD-TYPE 110 89 90 178
'CTCF MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0247 (Fisher's exact test), Q value = 0.16

Table S11597.  Gene #1087: 'CTCF MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
CTCF MUTATED 2 0 6 2 1 2 6
CTCF WILD-TYPE 58 50 43 38 62 123 93

Figure S3090.  Get High-res Image Gene #1087: 'CTCF MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CTCF MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.069 (Fisher's exact test), Q value = 0.28

Table S11598.  Gene #1087: 'CTCF MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
CTCF MUTATED 8 0 1 10
CTCF WILD-TYPE 122 78 67 186
'CTCF MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.129 (Fisher's exact test), Q value = 0.4

Table S11599.  Gene #1087: 'CTCF MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
CTCF MUTATED 3 2 3 2 6 0 1 0 2
CTCF WILD-TYPE 37 60 25 78 63 48 42 28 72
'RNF38 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.529 (Fisher's exact test), Q value = 0.85

Table S11600.  Gene #1088: 'RNF38 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
RNF38 MUTATED 4 1 1 0
RNF38 WILD-TYPE 174 182 100 20
'RNF38 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.558 (Fisher's exact test), Q value = 0.87

Table S11601.  Gene #1088: 'RNF38 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
RNF38 MUTATED 2 0 2
RNF38 WILD-TYPE 85 80 98
'RNF38 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.849 (Fisher's exact test), Q value = 1

Table S11602.  Gene #1088: 'RNF38 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
RNF38 MUTATED 1 3 1
RNF38 WILD-TYPE 88 157 137
'RNF38 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.594 (Fisher's exact test), Q value = 0.9

Table S11603.  Gene #1088: 'RNF38 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
RNF38 MUTATED 2 3 0
RNF38 WILD-TYPE 180 130 72
'RNF38 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.348 (Fisher's exact test), Q value = 0.68

Table S11604.  Gene #1088: 'RNF38 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
RNF38 MUTATED 0 2 2 2
RNF38 WILD-TYPE 112 94 90 184
'RNF38 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.112 (Fisher's exact test), Q value = 0.37

Table S11605.  Gene #1088: 'RNF38 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
RNF38 MUTATED 0 1 3 0 0 1 1
RNF38 WILD-TYPE 60 49 46 40 63 124 98
'RNF38 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.31 (Fisher's exact test), Q value = 0.64

Table S11606.  Gene #1088: 'RNF38 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
RNF38 MUTATED 2 1 2 1
RNF38 WILD-TYPE 128 77 66 195
'RNF38 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.683 (Fisher's exact test), Q value = 0.96

Table S11607.  Gene #1088: 'RNF38 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
RNF38 MUTATED 1 1 1 0 1 0 1 0 1
RNF38 WILD-TYPE 39 61 27 80 68 48 42 28 73
'RNF38 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.78 (Fisher's exact test), Q value = 1

Table S11608.  Gene #1088: 'RNF38 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
RNF38 MUTATED 1 0 1 1
RNF38 WILD-TYPE 32 31 26 18
'RNF38 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S11609.  Gene #1088: 'RNF38 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
RNF38 MUTATED 2 0 1 0
RNF38 WILD-TYPE 52 10 23 22
'ANKRD50 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00246 (Fisher's exact test), Q value = 0.043

Table S11610.  Gene #1089: 'ANKRD50 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ANKRD50 MUTATED 4 0 0 4
ANKRD50 WILD-TYPE 42 58 64 39

Figure S3091.  Get High-res Image Gene #1089: 'ANKRD50 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'ANKRD50 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0493 (Fisher's exact test), Q value = 0.24

Table S11611.  Gene #1089: 'ANKRD50 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ANKRD50 MUTATED 5 1 2
ANKRD50 WILD-TYPE 46 82 75

Figure S3092.  Get High-res Image Gene #1089: 'ANKRD50 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'ANKRD50 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00068 (Fisher's exact test), Q value = 0.019

Table S11612.  Gene #1089: 'ANKRD50 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ANKRD50 MUTATED 17 2 2 0
ANKRD50 WILD-TYPE 161 181 99 20

Figure S3093.  Get High-res Image Gene #1089: 'ANKRD50 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ANKRD50 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0189 (Fisher's exact test), Q value = 0.14

Table S11613.  Gene #1089: 'ANKRD50 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ANKRD50 MUTATED 3 0 8
ANKRD50 WILD-TYPE 84 80 92

Figure S3094.  Get High-res Image Gene #1089: 'ANKRD50 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'ANKRD50 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.733 (Fisher's exact test), Q value = 1

Table S11614.  Gene #1089: 'ANKRD50 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ANKRD50 MUTATED 5 7 5
ANKRD50 WILD-TYPE 84 153 133
'ANKRD50 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.295 (Fisher's exact test), Q value = 0.62

Table S11615.  Gene #1089: 'ANKRD50 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ANKRD50 MUTATED 5 8 4
ANKRD50 WILD-TYPE 177 125 68
'ANKRD50 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0187 (Fisher's exact test), Q value = 0.14

Table S11616.  Gene #1089: 'ANKRD50 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ANKRD50 MUTATED 0 7 5 9
ANKRD50 WILD-TYPE 112 89 87 177

Figure S3095.  Get High-res Image Gene #1089: 'ANKRD50 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'ANKRD50 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00026 (Fisher's exact test), Q value = 0.0099

Table S11617.  Gene #1089: 'ANKRD50 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ANKRD50 MUTATED 2 0 6 2 2 0 9
ANKRD50 WILD-TYPE 58 50 43 38 61 125 90

Figure S3096.  Get High-res Image Gene #1089: 'ANKRD50 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ANKRD50 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.825 (Fisher's exact test), Q value = 1

Table S11618.  Gene #1089: 'ANKRD50 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ANKRD50 MUTATED 5 2 2 10
ANKRD50 WILD-TYPE 125 76 66 186
'ANKRD50 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00089 (Fisher's exact test), Q value = 0.023

Table S11619.  Gene #1089: 'ANKRD50 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ANKRD50 MUTATED 1 3 2 1 10 0 1 1 0
ANKRD50 WILD-TYPE 39 59 26 79 59 48 42 27 74

Figure S3097.  Get High-res Image Gene #1089: 'ANKRD50 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'ANKRD50 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0845 (Fisher's exact test), Q value = 0.31

Table S11620.  Gene #1089: 'ANKRD50 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
ANKRD50 MUTATED 0 1 0 2
ANKRD50 WILD-TYPE 33 30 27 17
'ANKRD50 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S11621.  Gene #1089: 'ANKRD50 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
ANKRD50 MUTATED 2 0 1 0
ANKRD50 WILD-TYPE 52 10 23 22
'DNAJC16 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.306 (Fisher's exact test), Q value = 0.64

Table S11622.  Gene #1090: 'DNAJC16 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
DNAJC16 MUTATED 1 1 0 2
DNAJC16 WILD-TYPE 45 57 64 41
'DNAJC16 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S11623.  Gene #1090: 'DNAJC16 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
DNAJC16 MUTATED 1 2 1
DNAJC16 WILD-TYPE 50 81 76
'DNAJC16 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0639 (Fisher's exact test), Q value = 0.27

Table S11624.  Gene #1090: 'DNAJC16 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
DNAJC16 MUTATED 7 1 2 1
DNAJC16 WILD-TYPE 171 182 99 19
'DNAJC16 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.602 (Fisher's exact test), Q value = 0.9

Table S11625.  Gene #1090: 'DNAJC16 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
DNAJC16 MUTATED 3 1 4
DNAJC16 WILD-TYPE 84 79 96
'DNAJC16 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.717 (Fisher's exact test), Q value = 0.99

Table S11626.  Gene #1090: 'DNAJC16 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
DNAJC16 MUTATED 1 5 4
DNAJC16 WILD-TYPE 88 155 134
'DNAJC16 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.838 (Fisher's exact test), Q value = 1

Table S11627.  Gene #1090: 'DNAJC16 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
DNAJC16 MUTATED 4 4 2
DNAJC16 WILD-TYPE 178 129 70
'DNAJC16 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.508 (Fisher's exact test), Q value = 0.83

Table S11628.  Gene #1090: 'DNAJC16 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
DNAJC16 MUTATED 1 4 2 4
DNAJC16 WILD-TYPE 111 92 90 182
'DNAJC16 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.205 (Fisher's exact test), Q value = 0.51

Table S11629.  Gene #1090: 'DNAJC16 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
DNAJC16 MUTATED 2 2 3 1 0 1 2
DNAJC16 WILD-TYPE 58 48 46 39 63 124 97
'DNAJC16 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.873 (Fisher's exact test), Q value = 1

Table S11630.  Gene #1090: 'DNAJC16 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
DNAJC16 MUTATED 4 1 1 5
DNAJC16 WILD-TYPE 126 77 67 191
'DNAJC16 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.305 (Fisher's exact test), Q value = 0.63

Table S11631.  Gene #1090: 'DNAJC16 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
DNAJC16 MUTATED 0 1 2 2 2 0 3 0 1
DNAJC16 WILD-TYPE 40 61 26 78 67 48 40 28 73
'DNAJC16 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.193 (Fisher's exact test), Q value = 0.5

Table S11632.  Gene #1090: 'DNAJC16 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
DNAJC16 MUTATED 0 1 1 2
DNAJC16 WILD-TYPE 33 30 26 17
'DNAJC16 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.869 (Fisher's exact test), Q value = 1

Table S11633.  Gene #1090: 'DNAJC16 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
DNAJC16 MUTATED 3 0 1 0
DNAJC16 WILD-TYPE 51 10 23 22
'PIGK MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0163 (Fisher's exact test), Q value = 0.13

Table S11634.  Gene #1091: 'PIGK MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
PIGK MUTATED 1 0 0 3
PIGK WILD-TYPE 45 58 64 40

Figure S3098.  Get High-res Image Gene #1091: 'PIGK MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'PIGK MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0407 (Fisher's exact test), Q value = 0.21

Table S11635.  Gene #1091: 'PIGK MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
PIGK MUTATED 3 0 1
PIGK WILD-TYPE 48 83 76

Figure S3099.  Get High-res Image Gene #1091: 'PIGK MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'PIGK MUTATION STATUS' versus 'CN_CNMF'

P value = 0.292 (Fisher's exact test), Q value = 0.62

Table S11636.  Gene #1091: 'PIGK MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
PIGK MUTATED 8 3 1 0
PIGK WILD-TYPE 170 180 100 20
'PIGK MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.904 (Fisher's exact test), Q value = 1

Table S11637.  Gene #1091: 'PIGK MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
PIGK MUTATED 2 3 3
PIGK WILD-TYPE 85 77 97
'PIGK MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.701 (Fisher's exact test), Q value = 0.97

Table S11638.  Gene #1091: 'PIGK MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
PIGK MUTATED 2 2 3
PIGK WILD-TYPE 87 158 135
'PIGK MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.886 (Fisher's exact test), Q value = 1

Table S11639.  Gene #1091: 'PIGK MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
PIGK MUTATED 3 3 1
PIGK WILD-TYPE 179 130 71
'PIGK MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.578 (Fisher's exact test), Q value = 0.88

Table S11640.  Gene #1091: 'PIGK MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
PIGK MUTATED 3 4 1 4
PIGK WILD-TYPE 109 92 91 182
'PIGK MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.149 (Fisher's exact test), Q value = 0.43

Table S11641.  Gene #1091: 'PIGK MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
PIGK MUTATED 2 2 2 2 1 0 3
PIGK WILD-TYPE 58 48 47 38 62 125 96
'PIGK MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.473 (Fisher's exact test), Q value = 0.8

Table S11642.  Gene #1091: 'PIGK MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
PIGK MUTATED 6 1 1 4
PIGK WILD-TYPE 124 77 67 192
'PIGK MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.128 (Fisher's exact test), Q value = 0.4

Table S11643.  Gene #1091: 'PIGK MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
PIGK MUTATED 2 1 0 2 5 0 2 0 0
PIGK WILD-TYPE 38 61 28 78 64 48 41 28 74
'COPB2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.13 (Fisher's exact test), Q value = 0.4

Table S11644.  Gene #1092: 'COPB2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
COPB2 MUTATED 1 0 1 3
COPB2 WILD-TYPE 45 58 63 40
'COPB2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.635 (Fisher's exact test), Q value = 0.93

Table S11645.  Gene #1092: 'COPB2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
COPB2 MUTATED 2 1 2
COPB2 WILD-TYPE 49 82 75
'COPB2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0558 (Fisher's exact test), Q value = 0.26

Table S11646.  Gene #1092: 'COPB2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
COPB2 MUTATED 11 2 3 0
COPB2 WILD-TYPE 167 181 98 20
'COPB2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S11647.  Gene #1092: 'COPB2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
COPB2 MUTATED 4 3 4
COPB2 WILD-TYPE 83 77 96
'COPB2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.174 (Fisher's exact test), Q value = 0.47

Table S11648.  Gene #1092: 'COPB2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
COPB2 MUTATED 2 4 9
COPB2 WILD-TYPE 87 156 129
'COPB2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.509 (Fisher's exact test), Q value = 0.83

Table S11649.  Gene #1092: 'COPB2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
COPB2 MUTATED 9 5 1
COPB2 WILD-TYPE 173 128 71
'COPB2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.673 (Fisher's exact test), Q value = 0.96

Table S11650.  Gene #1092: 'COPB2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
COPB2 MUTATED 4 5 2 5
COPB2 WILD-TYPE 108 91 90 181
'COPB2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0151 (Fisher's exact test), Q value = 0.12

Table S11651.  Gene #1092: 'COPB2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
COPB2 MUTATED 3 0 6 1 2 1 3
COPB2 WILD-TYPE 57 50 43 39 61 124 96

Figure S3100.  Get High-res Image Gene #1092: 'COPB2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'COPB2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.839 (Fisher's exact test), Q value = 1

Table S11652.  Gene #1092: 'COPB2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
COPB2 MUTATED 5 3 1 6
COPB2 WILD-TYPE 125 75 67 190
'COPB2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00522 (Fisher's exact test), Q value = 0.065

Table S11653.  Gene #1092: 'COPB2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
COPB2 MUTATED 0 1 1 1 8 3 1 0 0
COPB2 WILD-TYPE 40 61 27 79 61 45 42 28 74

Figure S3101.  Get High-res Image Gene #1092: 'COPB2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'COPB2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.665 (Fisher's exact test), Q value = 0.95

Table S11654.  Gene #1092: 'COPB2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
COPB2 MUTATED 1 1 1 2
COPB2 WILD-TYPE 32 30 26 17
'COPB2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.348 (Fisher's exact test), Q value = 0.68

Table S11655.  Gene #1092: 'COPB2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
COPB2 MUTATED 1 0 2 2
COPB2 WILD-TYPE 53 10 22 20
'CIZ1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.834 (Fisher's exact test), Q value = 1

Table S11656.  Gene #1093: 'CIZ1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
CIZ1 MUTATED 2 1 2 2
CIZ1 WILD-TYPE 44 57 62 41
'CIZ1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.794 (Fisher's exact test), Q value = 1

Table S11657.  Gene #1093: 'CIZ1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
CIZ1 MUTATED 2 2 3
CIZ1 WILD-TYPE 49 81 74
'CIZ1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.053 (Fisher's exact test), Q value = 0.25

Table S11658.  Gene #1093: 'CIZ1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
CIZ1 MUTATED 11 3 1 0
CIZ1 WILD-TYPE 167 180 100 20
'CIZ1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.397 (Fisher's exact test), Q value = 0.72

Table S11659.  Gene #1093: 'CIZ1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
CIZ1 MUTATED 2 1 5
CIZ1 WILD-TYPE 85 79 95
'CIZ1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.939 (Fisher's exact test), Q value = 1

Table S11660.  Gene #1093: 'CIZ1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
CIZ1 MUTATED 3 6 4
CIZ1 WILD-TYPE 86 154 134
'CIZ1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0987 (Fisher's exact test), Q value = 0.35

Table S11661.  Gene #1093: 'CIZ1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
CIZ1 MUTATED 3 8 2
CIZ1 WILD-TYPE 179 125 70
'CIZ1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.283 (Fisher's exact test), Q value = 0.61

Table S11662.  Gene #1093: 'CIZ1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
CIZ1 MUTATED 1 5 2 7
CIZ1 WILD-TYPE 111 91 90 179
'CIZ1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0991 (Fisher's exact test), Q value = 0.35

Table S11663.  Gene #1093: 'CIZ1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
CIZ1 MUTATED 2 3 4 0 0 2 4
CIZ1 WILD-TYPE 58 47 45 40 63 123 95
'CIZ1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0381 (Fisher's exact test), Q value = 0.2

Table S11664.  Gene #1093: 'CIZ1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
CIZ1 MUTATED 7 0 0 9
CIZ1 WILD-TYPE 123 78 68 187

Figure S3102.  Get High-res Image Gene #1093: 'CIZ1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'CIZ1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.652 (Fisher's exact test), Q value = 0.94

Table S11665.  Gene #1093: 'CIZ1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
CIZ1 MUTATED 2 2 0 2 5 0 1 1 3
CIZ1 WILD-TYPE 38 60 28 78 64 48 42 27 71
'CIZ1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00442 (Fisher's exact test), Q value = 0.061

Table S11666.  Gene #1093: 'CIZ1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
CIZ1 MUTATED 0 0 0 3
CIZ1 WILD-TYPE 33 31 27 16

Figure S3103.  Get High-res Image Gene #1093: 'CIZ1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'CIZ1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.447 (Fisher's exact test), Q value = 0.77

Table S11667.  Gene #1093: 'CIZ1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
CIZ1 MUTATED 1 0 2 0
CIZ1 WILD-TYPE 53 10 22 22
'TMEM92 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.276 (Fisher's exact test), Q value = 0.6

Table S11668.  Gene #1094: 'TMEM92 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
TMEM92 MUTATED 3 0 0 0
TMEM92 WILD-TYPE 175 183 101 20
'TMEM92 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.266 (Fisher's exact test), Q value = 0.59

Table S11669.  Gene #1094: 'TMEM92 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
TMEM92 MUTATED 0 2 0 1
TMEM92 WILD-TYPE 112 94 92 185
'TMEM92 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.097 (Fisher's exact test), Q value = 0.34

Table S11670.  Gene #1094: 'TMEM92 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
TMEM92 MUTATED 0 0 2 0 0 0 1
TMEM92 WILD-TYPE 60 50 47 40 63 125 98
'TMEM92 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.645 (Fisher's exact test), Q value = 0.93

Table S11671.  Gene #1094: 'TMEM92 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
TMEM92 MUTATED 2 0 0 1
TMEM92 WILD-TYPE 128 78 68 195
'TMEM92 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0667 (Fisher's exact test), Q value = 0.28

Table S11672.  Gene #1094: 'TMEM92 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
TMEM92 MUTATED 0 0 0 0 3 0 0 0 0
TMEM92 WILD-TYPE 40 62 28 80 66 48 43 28 74
'TAS2R1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.176 (Fisher's exact test), Q value = 0.48

Table S11673.  Gene #1095: 'TAS2R1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
TAS2R1 MUTATED 4 0 1 0
TAS2R1 WILD-TYPE 174 183 100 20
'TAS2R1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.111 (Fisher's exact test), Q value = 0.37

Table S11674.  Gene #1095: 'TAS2R1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
TAS2R1 MUTATED 0 0 3
TAS2R1 WILD-TYPE 87 80 97
'TAS2R1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.491 (Fisher's exact test), Q value = 0.82

Table S11675.  Gene #1095: 'TAS2R1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
TAS2R1 MUTATED 0 2 1 2
TAS2R1 WILD-TYPE 112 94 91 184
'TAS2R1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.385 (Fisher's exact test), Q value = 0.71

Table S11676.  Gene #1095: 'TAS2R1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
TAS2R1 MUTATED 0 1 2 0 0 1 1
TAS2R1 WILD-TYPE 60 49 47 40 63 124 98
'TAS2R1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.685 (Fisher's exact test), Q value = 0.96

Table S11677.  Gene #1095: 'TAS2R1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
TAS2R1 MUTATED 2 0 0 3
TAS2R1 WILD-TYPE 128 78 68 193
'TAS2R1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.678 (Fisher's exact test), Q value = 0.96

Table S11678.  Gene #1095: 'TAS2R1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
TAS2R1 MUTATED 0 1 1 2 1 0 0 0 0
TAS2R1 WILD-TYPE 40 61 27 78 68 48 43 28 74
'EHHADH MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0651 (Fisher's exact test), Q value = 0.28

Table S11679.  Gene #1096: 'EHHADH MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
EHHADH MUTATED 1 0 0 2
EHHADH WILD-TYPE 45 58 64 41
'EHHADH MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.25 (Fisher's exact test), Q value = 0.58

Table S11680.  Gene #1096: 'EHHADH MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
EHHADH MUTATED 2 1 0
EHHADH WILD-TYPE 49 82 77
'EHHADH MUTATION STATUS' versus 'CN_CNMF'

P value = 0.107 (Fisher's exact test), Q value = 0.36

Table S11681.  Gene #1096: 'EHHADH MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
EHHADH MUTATED 9 3 1 1
EHHADH WILD-TYPE 169 180 100 19
'EHHADH MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0247 (Fisher's exact test), Q value = 0.16

Table S11682.  Gene #1096: 'EHHADH MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
EHHADH MUTATED 7 0 5
EHHADH WILD-TYPE 80 80 95

Figure S3104.  Get High-res Image Gene #1096: 'EHHADH MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'EHHADH MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.083 (Fisher's exact test), Q value = 0.31

Table S11683.  Gene #1096: 'EHHADH MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
EHHADH MUTATED 0 5 7
EHHADH WILD-TYPE 89 155 131
'EHHADH MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.246 (Fisher's exact test), Q value = 0.57

Table S11684.  Gene #1096: 'EHHADH MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
EHHADH MUTATED 7 5 0
EHHADH WILD-TYPE 175 128 72
'EHHADH MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0121 (Fisher's exact test), Q value = 0.11

Table S11685.  Gene #1096: 'EHHADH MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
EHHADH MUTATED 0 5 6 4
EHHADH WILD-TYPE 112 91 86 182

Figure S3105.  Get High-res Image Gene #1096: 'EHHADH MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'EHHADH MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.251 (Fisher's exact test), Q value = 0.58

Table S11686.  Gene #1096: 'EHHADH MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
EHHADH MUTATED 1 1 3 1 4 1 4
EHHADH WILD-TYPE 59 49 46 39 59 124 95
'EHHADH MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.28 (Fisher's exact test), Q value = 0.61

Table S11687.  Gene #1096: 'EHHADH MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
EHHADH MUTATED 3 5 2 4
EHHADH WILD-TYPE 127 73 66 192
'EHHADH MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0155 (Fisher's exact test), Q value = 0.12

Table S11688.  Gene #1096: 'EHHADH MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
EHHADH MUTATED 0 6 1 1 4 0 2 0 0
EHHADH WILD-TYPE 40 56 27 79 65 48 41 28 74

Figure S3106.  Get High-res Image Gene #1096: 'EHHADH MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'EHHADH MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.666 (Fisher's exact test), Q value = 0.95

Table S11689.  Gene #1096: 'EHHADH MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
EHHADH MUTATED 1 1 1 2
EHHADH WILD-TYPE 32 30 26 17
'EHHADH MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.575 (Fisher's exact test), Q value = 0.88

Table S11690.  Gene #1096: 'EHHADH MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
EHHADH MUTATED 3 0 2 0
EHHADH WILD-TYPE 51 10 22 22
'KDM2B MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.212 (Fisher's exact test), Q value = 0.52

Table S11691.  Gene #1097: 'KDM2B MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
KDM2B MUTATED 4 1 1 1
KDM2B WILD-TYPE 42 57 63 42
'KDM2B MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.106 (Fisher's exact test), Q value = 0.36

Table S11692.  Gene #1097: 'KDM2B MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
KDM2B MUTATED 4 1 2
KDM2B WILD-TYPE 47 82 75
'KDM2B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00847 (Fisher's exact test), Q value = 0.086

Table S11693.  Gene #1097: 'KDM2B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
KDM2B MUTATED 15 3 2 1
KDM2B WILD-TYPE 163 180 99 19

Figure S3107.  Get High-res Image Gene #1097: 'KDM2B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'KDM2B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.095 (Fisher's exact test), Q value = 0.34

Table S11694.  Gene #1097: 'KDM2B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
KDM2B MUTATED 2 4 10
KDM2B WILD-TYPE 85 76 90
'KDM2B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.187 (Fisher's exact test), Q value = 0.49

Table S11695.  Gene #1097: 'KDM2B MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
KDM2B MUTATED 1 8 8
KDM2B WILD-TYPE 88 152 130
'KDM2B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S11696.  Gene #1097: 'KDM2B MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
KDM2B MUTATED 8 6 3
KDM2B WILD-TYPE 174 127 69
'KDM2B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.32 (Fisher's exact test), Q value = 0.65

Table S11697.  Gene #1097: 'KDM2B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
KDM2B MUTATED 4 8 3 7
KDM2B WILD-TYPE 108 88 89 179
'KDM2B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 4e-04 (Fisher's exact test), Q value = 0.013

Table S11698.  Gene #1097: 'KDM2B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
KDM2B MUTATED 3 1 10 1 1 2 4
KDM2B WILD-TYPE 57 49 39 39 62 123 95

Figure S3108.  Get High-res Image Gene #1097: 'KDM2B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'KDM2B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0913 (Fisher's exact test), Q value = 0.33

Table S11699.  Gene #1097: 'KDM2B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
KDM2B MUTATED 9 2 0 11
KDM2B WILD-TYPE 121 76 68 185
'KDM2B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.079 (Fisher's exact test), Q value = 0.3

Table S11700.  Gene #1097: 'KDM2B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
KDM2B MUTATED 2 3 0 2 9 2 1 2 1
KDM2B WILD-TYPE 38 59 28 78 60 46 42 26 73
'KDM2B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.097 (Fisher's exact test), Q value = 0.34

Table S11701.  Gene #1097: 'KDM2B MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
KDM2B MUTATED 2 0 0 2
KDM2B WILD-TYPE 31 31 27 17
'KDM2B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.489 (Fisher's exact test), Q value = 0.82

Table S11702.  Gene #1097: 'KDM2B MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
KDM2B MUTATED 1 0 2 1
KDM2B WILD-TYPE 53 10 22 21
'ITGB6 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0157 (Fisher's exact test), Q value = 0.12

Table S11703.  Gene #1098: 'ITGB6 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ITGB6 MUTATED 1 0 0 3
ITGB6 WILD-TYPE 45 58 64 40

Figure S3109.  Get High-res Image Gene #1098: 'ITGB6 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'ITGB6 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0607 (Fisher's exact test), Q value = 0.27

Table S11704.  Gene #1098: 'ITGB6 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ITGB6 MUTATED 3 1 0
ITGB6 WILD-TYPE 48 82 77
'ITGB6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0298 (Fisher's exact test), Q value = 0.18

Table S11705.  Gene #1098: 'ITGB6 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ITGB6 MUTATED 13 3 2 0
ITGB6 WILD-TYPE 165 180 99 20

Figure S3110.  Get High-res Image Gene #1098: 'ITGB6 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ITGB6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.141 (Fisher's exact test), Q value = 0.42

Table S11706.  Gene #1098: 'ITGB6 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ITGB6 MUTATED 6 1 7
ITGB6 WILD-TYPE 81 79 93
'ITGB6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.207 (Fisher's exact test), Q value = 0.51

Table S11707.  Gene #1098: 'ITGB6 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ITGB6 MUTATED 1 9 7
ITGB6 WILD-TYPE 88 151 131
'ITGB6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.413 (Fisher's exact test), Q value = 0.74

Table S11708.  Gene #1098: 'ITGB6 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ITGB6 MUTATED 9 7 1
ITGB6 WILD-TYPE 173 126 71
'ITGB6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0249 (Fisher's exact test), Q value = 0.16

Table S11709.  Gene #1098: 'ITGB6 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ITGB6 MUTATED 2 6 7 3
ITGB6 WILD-TYPE 110 90 85 183

Figure S3111.  Get High-res Image Gene #1098: 'ITGB6 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'ITGB6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00082 (Fisher's exact test), Q value = 0.021

Table S11710.  Gene #1098: 'ITGB6 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ITGB6 MUTATED 3 1 7 0 3 0 4
ITGB6 WILD-TYPE 57 49 42 40 60 125 95

Figure S3112.  Get High-res Image Gene #1098: 'ITGB6 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ITGB6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.106 (Fisher's exact test), Q value = 0.36

Table S11711.  Gene #1098: 'ITGB6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ITGB6 MUTATED 8 5 1 4
ITGB6 WILD-TYPE 122 73 67 192
'ITGB6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0746 (Fisher's exact test), Q value = 0.29

Table S11712.  Gene #1098: 'ITGB6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ITGB6 MUTATED 1 5 2 2 6 1 1 0 0
ITGB6 WILD-TYPE 39 57 26 78 63 47 42 28 74
'ITGB6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0256 (Fisher's exact test), Q value = 0.16

Table S11713.  Gene #1098: 'ITGB6 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
ITGB6 MUTATED 2 0 1 4
ITGB6 WILD-TYPE 31 31 26 15

Figure S3113.  Get High-res Image Gene #1098: 'ITGB6 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'ITGB6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.378 (Fisher's exact test), Q value = 0.71

Table S11714.  Gene #1098: 'ITGB6 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
ITGB6 MUTATED 4 0 3 0
ITGB6 WILD-TYPE 50 10 21 22
'ESCO1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.005 (Fisher's exact test), Q value = 0.064

Table S11715.  Gene #1099: 'ESCO1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ESCO1 MUTATED 4 0 0 3
ESCO1 WILD-TYPE 42 58 64 40

Figure S3114.  Get High-res Image Gene #1099: 'ESCO1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'ESCO1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.105 (Fisher's exact test), Q value = 0.36

Table S11716.  Gene #1099: 'ESCO1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ESCO1 MUTATED 4 1 2
ESCO1 WILD-TYPE 47 82 75
'ESCO1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00327 (Fisher's exact test), Q value = 0.051

Table S11717.  Gene #1099: 'ESCO1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ESCO1 MUTATED 14 2 1 0
ESCO1 WILD-TYPE 164 181 100 20

Figure S3115.  Get High-res Image Gene #1099: 'ESCO1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ESCO1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.641 (Fisher's exact test), Q value = 0.93

Table S11718.  Gene #1099: 'ESCO1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ESCO1 MUTATED 5 2 4
ESCO1 WILD-TYPE 82 78 96
'ESCO1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.275 (Fisher's exact test), Q value = 0.6

Table S11719.  Gene #1099: 'ESCO1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ESCO1 MUTATED 1 8 4
ESCO1 WILD-TYPE 88 152 134
'ESCO1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.159 (Fisher's exact test), Q value = 0.45

Table S11720.  Gene #1099: 'ESCO1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ESCO1 MUTATED 3 6 4
ESCO1 WILD-TYPE 179 127 68
'ESCO1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.489 (Fisher's exact test), Q value = 0.82

Table S11721.  Gene #1099: 'ESCO1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ESCO1 MUTATED 2 5 2 8
ESCO1 WILD-TYPE 110 91 90 178
'ESCO1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.217 (Fisher's exact test), Q value = 0.53

Table S11722.  Gene #1099: 'ESCO1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ESCO1 MUTATED 2 2 3 2 1 1 6
ESCO1 WILD-TYPE 58 48 46 38 62 124 93
'ESCO1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.764 (Fisher's exact test), Q value = 1

Table S11723.  Gene #1099: 'ESCO1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ESCO1 MUTATED 5 2 1 9
ESCO1 WILD-TYPE 125 76 67 187
'ESCO1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.306 (Fisher's exact test), Q value = 0.64

Table S11724.  Gene #1099: 'ESCO1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ESCO1 MUTATED 3 2 1 2 6 0 1 0 2
ESCO1 WILD-TYPE 37 60 27 78 63 48 42 28 72
'ESCO1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00352 (Fisher's exact test), Q value = 0.054

Table S11725.  Gene #1099: 'ESCO1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
ESCO1 MUTATED 1 0 0 4
ESCO1 WILD-TYPE 32 31 27 15

Figure S3116.  Get High-res Image Gene #1099: 'ESCO1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'ESCO1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.576 (Fisher's exact test), Q value = 0.88

Table S11726.  Gene #1099: 'ESCO1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
ESCO1 MUTATED 3 0 2 0
ESCO1 WILD-TYPE 51 10 22 22
'SERPINB10 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0156 (Fisher's exact test), Q value = 0.12

Table S11727.  Gene #1100: 'SERPINB10 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
SERPINB10 MUTATED 1 0 0 3
SERPINB10 WILD-TYPE 45 58 64 40

Figure S3117.  Get High-res Image Gene #1100: 'SERPINB10 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'SERPINB10 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.556 (Fisher's exact test), Q value = 0.87

Table S11728.  Gene #1100: 'SERPINB10 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
SERPINB10 MUTATED 2 1 1
SERPINB10 WILD-TYPE 49 82 76
'SERPINB10 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00829 (Fisher's exact test), Q value = 0.085

Table S11729.  Gene #1100: 'SERPINB10 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
SERPINB10 MUTATED 9 0 3 0
SERPINB10 WILD-TYPE 169 183 98 20

Figure S3118.  Get High-res Image Gene #1100: 'SERPINB10 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'SERPINB10 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S11730.  Gene #1100: 'SERPINB10 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
SERPINB10 MUTATED 3 2 3
SERPINB10 WILD-TYPE 84 78 97
'SERPINB10 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.832 (Fisher's exact test), Q value = 1

Table S11731.  Gene #1100: 'SERPINB10 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
SERPINB10 MUTATED 1 4 4
SERPINB10 WILD-TYPE 88 156 134
'SERPINB10 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S11732.  Gene #1100: 'SERPINB10 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
SERPINB10 MUTATED 5 3 1
SERPINB10 WILD-TYPE 177 130 71
'SERPINB10 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.61 (Fisher's exact test), Q value = 0.91

Table S11733.  Gene #1100: 'SERPINB10 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
SERPINB10 MUTATED 1 3 3 5
SERPINB10 WILD-TYPE 111 93 89 181
'SERPINB10 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.425 (Fisher's exact test), Q value = 0.75

Table S11734.  Gene #1100: 'SERPINB10 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
SERPINB10 MUTATED 1 2 3 1 1 1 3
SERPINB10 WILD-TYPE 59 48 46 39 62 124 96
'SERPINB10 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.438 (Fisher's exact test), Q value = 0.76

Table S11735.  Gene #1100: 'SERPINB10 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
SERPINB10 MUTATED 4 3 0 4
SERPINB10 WILD-TYPE 126 75 68 192
'SERPINB10 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.362 (Fisher's exact test), Q value = 0.69

Table S11736.  Gene #1100: 'SERPINB10 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
SERPINB10 MUTATED 0 2 2 1 3 0 2 0 1
SERPINB10 WILD-TYPE 40 60 26 79 66 48 41 28 73
'SERPINB10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.36 (Fisher's exact test), Q value = 0.69

Table S11737.  Gene #1100: 'SERPINB10 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
SERPINB10 MUTATED 1 1 0 2
SERPINB10 WILD-TYPE 32 30 27 17
'SERPINB10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.869 (Fisher's exact test), Q value = 1

Table S11738.  Gene #1100: 'SERPINB10 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
SERPINB10 MUTATED 3 0 1 0
SERPINB10 WILD-TYPE 51 10 23 22
'GRB14 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00623 (Fisher's exact test), Q value = 0.072

Table S11739.  Gene #1101: 'GRB14 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
GRB14 MUTATED 4 0 0 1
GRB14 WILD-TYPE 42 58 64 42

Figure S3119.  Get High-res Image Gene #1101: 'GRB14 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'GRB14 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.253 (Fisher's exact test), Q value = 0.58

Table S11740.  Gene #1101: 'GRB14 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
GRB14 MUTATED 3 1 1
GRB14 WILD-TYPE 48 82 76
'GRB14 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0856 (Fisher's exact test), Q value = 0.32

Table S11741.  Gene #1101: 'GRB14 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
GRB14 MUTATED 8 3 0 0
GRB14 WILD-TYPE 170 180 101 20
'GRB14 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.141 (Fisher's exact test), Q value = 0.42

Table S11742.  Gene #1101: 'GRB14 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
GRB14 MUTATED 4 0 2
GRB14 WILD-TYPE 83 80 98
'GRB14 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.731 (Fisher's exact test), Q value = 1

Table S11743.  Gene #1101: 'GRB14 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
GRB14 MUTATED 1 3 4
GRB14 WILD-TYPE 88 157 134
'GRB14 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.724 (Fisher's exact test), Q value = 0.99

Table S11744.  Gene #1101: 'GRB14 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
GRB14 MUTATED 3 3 2
GRB14 WILD-TYPE 179 130 70
'GRB14 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.826 (Fisher's exact test), Q value = 1

Table S11745.  Gene #1101: 'GRB14 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
GRB14 MUTATED 2 3 1 5
GRB14 WILD-TYPE 110 93 91 181
'GRB14 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0937 (Fisher's exact test), Q value = 0.34

Table S11746.  Gene #1101: 'GRB14 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
GRB14 MUTATED 2 2 0 3 0 1 3
GRB14 WILD-TYPE 58 48 49 37 63 124 96
'GRB14 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S11747.  Gene #1101: 'GRB14 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
GRB14 MUTATED 3 2 1 5
GRB14 WILD-TYPE 127 76 67 191
'GRB14 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.634 (Fisher's exact test), Q value = 0.93

Table S11748.  Gene #1101: 'GRB14 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
GRB14 MUTATED 2 1 0 2 3 1 1 1 0
GRB14 WILD-TYPE 38 61 28 78 66 47 42 27 74
'OR6K2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.111 (Fisher's exact test), Q value = 0.37

Table S11749.  Gene #1102: 'OR6K2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
OR6K2 MUTATED 2 0 1 3
OR6K2 WILD-TYPE 44 58 63 40
'OR6K2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0577 (Fisher's exact test), Q value = 0.26

Table S11750.  Gene #1102: 'OR6K2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
OR6K2 MUTATED 3 0 3
OR6K2 WILD-TYPE 48 83 74
'OR6K2 MUTATION STATUS' versus 'CN_CNMF'

P value = 3e-05 (Fisher's exact test), Q value = 0.0022

Table S11751.  Gene #1102: 'OR6K2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
OR6K2 MUTATED 16 0 0 0
OR6K2 WILD-TYPE 162 183 101 20

Figure S3120.  Get High-res Image Gene #1102: 'OR6K2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'OR6K2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.039 (Fisher's exact test), Q value = 0.21

Table S11752.  Gene #1102: 'OR6K2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
OR6K2 MUTATED 4 0 7
OR6K2 WILD-TYPE 83 80 93

Figure S3121.  Get High-res Image Gene #1102: 'OR6K2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'OR6K2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0561 (Fisher's exact test), Q value = 0.26

Table S11753.  Gene #1102: 'OR6K2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
OR6K2 MUTATED 0 7 8
OR6K2 WILD-TYPE 89 153 130
'OR6K2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.573 (Fisher's exact test), Q value = 0.88

Table S11754.  Gene #1102: 'OR6K2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
OR6K2 MUTATED 8 6 1
OR6K2 WILD-TYPE 174 127 71
'OR6K2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00213 (Fisher's exact test), Q value = 0.039

Table S11755.  Gene #1102: 'OR6K2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
OR6K2 MUTATED 0 9 2 5
OR6K2 WILD-TYPE 112 87 90 181

Figure S3122.  Get High-res Image Gene #1102: 'OR6K2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'OR6K2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00201 (Fisher's exact test), Q value = 0.038

Table S11756.  Gene #1102: 'OR6K2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
OR6K2 MUTATED 1 2 7 1 0 1 4
OR6K2 WILD-TYPE 59 48 42 39 63 124 95

Figure S3123.  Get High-res Image Gene #1102: 'OR6K2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'OR6K2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.646 (Fisher's exact test), Q value = 0.93

Table S11757.  Gene #1102: 'OR6K2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
OR6K2 MUTATED 5 1 1 8
OR6K2 WILD-TYPE 125 77 67 188
'OR6K2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.501 (Fisher's exact test), Q value = 0.83

Table S11758.  Gene #1102: 'OR6K2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
OR6K2 MUTATED 2 3 1 1 5 1 1 0 1
OR6K2 WILD-TYPE 38 59 27 79 64 47 42 28 73
'ARAP3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00858 (Fisher's exact test), Q value = 0.086

Table S11759.  Gene #1103: 'ARAP3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ARAP3 MUTATED 3 0 0 3
ARAP3 WILD-TYPE 43 58 64 40

Figure S3124.  Get High-res Image Gene #1103: 'ARAP3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'ARAP3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00184 (Fisher's exact test), Q value = 0.036

Table S11760.  Gene #1103: 'ARAP3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ARAP3 MUTATED 5 0 1
ARAP3 WILD-TYPE 46 83 76

Figure S3125.  Get High-res Image Gene #1103: 'ARAP3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'ARAP3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00045 (Fisher's exact test), Q value = 0.014

Table S11761.  Gene #1103: 'ARAP3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ARAP3 MUTATED 17 3 1 2
ARAP3 WILD-TYPE 161 180 100 18

Figure S3126.  Get High-res Image Gene #1103: 'ARAP3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ARAP3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0518 (Fisher's exact test), Q value = 0.25

Table S11762.  Gene #1103: 'ARAP3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ARAP3 MUTATED 8 1 8
ARAP3 WILD-TYPE 79 79 92
'ARAP3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.018 (Fisher's exact test), Q value = 0.13

Table S11763.  Gene #1103: 'ARAP3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ARAP3 MUTATED 1 5 12
ARAP3 WILD-TYPE 88 155 126

Figure S3127.  Get High-res Image Gene #1103: 'ARAP3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'ARAP3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.536 (Fisher's exact test), Q value = 0.86

Table S11764.  Gene #1103: 'ARAP3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ARAP3 MUTATED 11 5 2
ARAP3 WILD-TYPE 171 128 70
'ARAP3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.417 (Fisher's exact test), Q value = 0.74

Table S11765.  Gene #1103: 'ARAP3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ARAP3 MUTATED 4 6 7 7
ARAP3 WILD-TYPE 108 90 85 179
'ARAP3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00033 (Fisher's exact test), Q value = 0.012

Table S11766.  Gene #1103: 'ARAP3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ARAP3 MUTATED 3 3 8 2 1 0 7
ARAP3 WILD-TYPE 57 47 41 38 62 125 92

Figure S3128.  Get High-res Image Gene #1103: 'ARAP3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ARAP3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0906 (Fisher's exact test), Q value = 0.33

Table S11767.  Gene #1103: 'ARAP3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ARAP3 MUTATED 10 3 0 10
ARAP3 WILD-TYPE 120 75 68 186
'ARAP3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.124 (Fisher's exact test), Q value = 0.39

Table S11768.  Gene #1103: 'ARAP3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ARAP3 MUTATED 2 5 1 1 8 2 2 1 1
ARAP3 WILD-TYPE 38 57 27 79 61 46 41 27 73
'ARAP3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.327 (Fisher's exact test), Q value = 0.66

Table S11769.  Gene #1103: 'ARAP3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
ARAP3 MUTATED 1 2 1 3
ARAP3 WILD-TYPE 32 29 26 16
'ARAP3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.468 (Fisher's exact test), Q value = 0.8

Table S11770.  Gene #1103: 'ARAP3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
ARAP3 MUTATED 5 0 0 2
ARAP3 WILD-TYPE 49 10 24 20
'ZNF334 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.201 (Fisher's exact test), Q value = 0.51

Table S11771.  Gene #1104: 'ZNF334 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ZNF334 MUTATED 2 1 1 4
ZNF334 WILD-TYPE 44 57 63 39
'ZNF334 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.31 (Fisher's exact test), Q value = 0.64

Table S11772.  Gene #1104: 'ZNF334 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ZNF334 MUTATED 4 2 2
ZNF334 WILD-TYPE 47 81 75
'ZNF334 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.109 (Fisher's exact test), Q value = 0.37

Table S11773.  Gene #1104: 'ZNF334 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ZNF334 MUTATED 13 4 4 0
ZNF334 WILD-TYPE 165 179 97 20
'ZNF334 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0929 (Fisher's exact test), Q value = 0.33

Table S11774.  Gene #1104: 'ZNF334 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ZNF334 MUTATED 8 2 3
ZNF334 WILD-TYPE 79 78 97
'ZNF334 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.143 (Fisher's exact test), Q value = 0.42

Table S11775.  Gene #1104: 'ZNF334 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ZNF334 MUTATED 1 6 9
ZNF334 WILD-TYPE 88 154 129
'ZNF334 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.752 (Fisher's exact test), Q value = 1

Table S11776.  Gene #1104: 'ZNF334 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ZNF334 MUTATED 7 7 2
ZNF334 WILD-TYPE 175 126 70
'ZNF334 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.218 (Fisher's exact test), Q value = 0.53

Table S11777.  Gene #1104: 'ZNF334 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ZNF334 MUTATED 2 3 7 9
ZNF334 WILD-TYPE 110 93 85 177
'ZNF334 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0668 (Fisher's exact test), Q value = 0.28

Table S11778.  Gene #1104: 'ZNF334 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ZNF334 MUTATED 2 2 2 3 2 1 9
ZNF334 WILD-TYPE 58 48 47 37 61 124 90
'ZNF334 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.391 (Fisher's exact test), Q value = 0.72

Table S11779.  Gene #1104: 'ZNF334 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ZNF334 MUTATED 3 4 2 12
ZNF334 WILD-TYPE 127 74 66 184
'ZNF334 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0614 (Fisher's exact test), Q value = 0.27

Table S11780.  Gene #1104: 'ZNF334 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ZNF334 MUTATED 1 4 3 0 6 2 3 0 2
ZNF334 WILD-TYPE 39 58 25 80 63 46 40 28 72
'ZNF334 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.305 (Fisher's exact test), Q value = 0.63

Table S11781.  Gene #1104: 'ZNF334 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
ZNF334 MUTATED 3 1 0 2
ZNF334 WILD-TYPE 30 30 27 17
'ZNF334 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.495 (Fisher's exact test), Q value = 0.82

Table S11782.  Gene #1104: 'ZNF334 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
ZNF334 MUTATED 4 0 0 2
ZNF334 WILD-TYPE 50 10 24 20
'SIRT4 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.016 (Fisher's exact test), Q value = 0.13

Table S11783.  Gene #1105: 'SIRT4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
SIRT4 MUTATED 1 0 0 3
SIRT4 WILD-TYPE 45 58 64 40

Figure S3129.  Get High-res Image Gene #1105: 'SIRT4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'SIRT4 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.554 (Fisher's exact test), Q value = 0.87

Table S11784.  Gene #1105: 'SIRT4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
SIRT4 MUTATED 2 1 1
SIRT4 WILD-TYPE 49 82 76
'SIRT4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0101 (Fisher's exact test), Q value = 0.096

Table S11785.  Gene #1105: 'SIRT4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
SIRT4 MUTATED 7 0 0 0
SIRT4 WILD-TYPE 171 183 101 20

Figure S3130.  Get High-res Image Gene #1105: 'SIRT4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'SIRT4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.777 (Fisher's exact test), Q value = 1

Table S11786.  Gene #1105: 'SIRT4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
SIRT4 MUTATED 1 0 2
SIRT4 WILD-TYPE 86 80 98
'SIRT4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.874 (Fisher's exact test), Q value = 1

Table S11787.  Gene #1105: 'SIRT4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
SIRT4 MUTATED 1 2 3
SIRT4 WILD-TYPE 88 158 135
'SIRT4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.759 (Fisher's exact test), Q value = 1

Table S11788.  Gene #1105: 'SIRT4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
SIRT4 MUTATED 4 1 1
SIRT4 WILD-TYPE 178 132 71
'SIRT4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.474 (Fisher's exact test), Q value = 0.8

Table S11789.  Gene #1105: 'SIRT4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
SIRT4 MUTATED 0 2 1 4
SIRT4 WILD-TYPE 112 94 91 182
'SIRT4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.181 (Fisher's exact test), Q value = 0.48

Table S11790.  Gene #1105: 'SIRT4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
SIRT4 MUTATED 1 0 3 0 0 1 2
SIRT4 WILD-TYPE 59 50 46 40 63 124 97
'SIRT4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.887 (Fisher's exact test), Q value = 1

Table S11791.  Gene #1105: 'SIRT4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
SIRT4 MUTATED 2 1 0 3
SIRT4 WILD-TYPE 128 77 68 193
'SIRT4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.507 (Fisher's exact test), Q value = 0.83

Table S11792.  Gene #1105: 'SIRT4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
SIRT4 MUTATED 1 1 0 1 3 0 0 0 0
SIRT4 WILD-TYPE 39 61 28 79 66 48 43 28 74
'C1ORF35 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.386 (Fisher's exact test), Q value = 0.71

Table S11793.  Gene #1106: 'C1ORF35 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
C1ORF35 MUTATED 4 1 0 0
C1ORF35 WILD-TYPE 174 182 101 20
'C1ORF35 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.388 (Fisher's exact test), Q value = 0.71

Table S11794.  Gene #1106: 'C1ORF35 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
C1ORF35 MUTATED 1 0 3
C1ORF35 WILD-TYPE 86 80 97
'C1ORF35 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.335 (Fisher's exact test), Q value = 0.66

Table S11795.  Gene #1106: 'C1ORF35 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
C1ORF35 MUTATED 1 0 2
C1ORF35 WILD-TYPE 88 160 136
'C1ORF35 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.422 (Fisher's exact test), Q value = 0.75

Table S11796.  Gene #1106: 'C1ORF35 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
C1ORF35 MUTATED 2 0 1
C1ORF35 WILD-TYPE 180 133 71
'C1ORF35 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.189 (Fisher's exact test), Q value = 0.49

Table S11797.  Gene #1106: 'C1ORF35 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
C1ORF35 MUTATED 0 2 2 1
C1ORF35 WILD-TYPE 112 94 90 185
'C1ORF35 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.171 (Fisher's exact test), Q value = 0.47

Table S11798.  Gene #1106: 'C1ORF35 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
C1ORF35 MUTATED 0 0 2 1 1 1 0
C1ORF35 WILD-TYPE 60 50 47 39 62 124 99
'C1ORF35 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.408 (Fisher's exact test), Q value = 0.73

Table S11799.  Gene #1106: 'C1ORF35 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
C1ORF35 MUTATED 3 1 0 1
C1ORF35 WILD-TYPE 127 77 68 195
'C1ORF35 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.691 (Fisher's exact test), Q value = 0.97

Table S11800.  Gene #1106: 'C1ORF35 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
C1ORF35 MUTATED 1 2 0 0 1 0 0 0 1
C1ORF35 WILD-TYPE 39 60 28 80 68 48 43 28 73
'PLK2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.122 (Fisher's exact test), Q value = 0.39

Table S11801.  Gene #1107: 'PLK2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
PLK2 MUTATED 2 0 0 1
PLK2 WILD-TYPE 44 58 64 42
'PLK2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S11802.  Gene #1107: 'PLK2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
PLK2 MUTATED 1 1 1
PLK2 WILD-TYPE 50 82 76
'PLK2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0604 (Fisher's exact test), Q value = 0.27

Table S11803.  Gene #1107: 'PLK2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
PLK2 MUTATED 6 0 1 0
PLK2 WILD-TYPE 172 183 100 20
'PLK2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.32 (Fisher's exact test), Q value = 0.65

Table S11804.  Gene #1107: 'PLK2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
PLK2 MUTATED 0 1 3
PLK2 WILD-TYPE 87 79 97
'PLK2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.373 (Fisher's exact test), Q value = 0.7

Table S11805.  Gene #1107: 'PLK2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
PLK2 MUTATED 0 2 3
PLK2 WILD-TYPE 89 158 135
'PLK2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.719 (Fisher's exact test), Q value = 0.99

Table S11806.  Gene #1107: 'PLK2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
PLK2 MUTATED 3 2 0
PLK2 WILD-TYPE 179 131 72
'PLK2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.952 (Fisher's exact test), Q value = 1

Table S11807.  Gene #1107: 'PLK2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
PLK2 MUTATED 1 2 1 3
PLK2 WILD-TYPE 111 94 91 183
'PLK2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.36 (Fisher's exact test), Q value = 0.69

Table S11808.  Gene #1107: 'PLK2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
PLK2 MUTATED 2 1 2 0 0 1 1
PLK2 WILD-TYPE 58 49 47 40 63 124 98
'PLK2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.794 (Fisher's exact test), Q value = 1

Table S11809.  Gene #1107: 'PLK2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
PLK2 MUTATED 2 0 1 4
PLK2 WILD-TYPE 128 78 67 192
'PLK2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.156 (Fisher's exact test), Q value = 0.44

Table S11810.  Gene #1107: 'PLK2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
PLK2 MUTATED 1 0 0 1 4 0 1 0 0
PLK2 WILD-TYPE 39 62 28 79 65 48 42 28 74
'CCT4 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.231 (Fisher's exact test), Q value = 0.55

Table S11811.  Gene #1108: 'CCT4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
CCT4 MUTATED 2 1 0 0
CCT4 WILD-TYPE 44 57 64 43
'CCT4 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.461 (Fisher's exact test), Q value = 0.79

Table S11812.  Gene #1108: 'CCT4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
CCT4 MUTATED 1 2 0
CCT4 WILD-TYPE 50 81 77
'CCT4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.171 (Fisher's exact test), Q value = 0.47

Table S11813.  Gene #1108: 'CCT4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
CCT4 MUTATED 7 7 0 0
CCT4 WILD-TYPE 171 176 101 20
'CCT4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.136 (Fisher's exact test), Q value = 0.41

Table S11814.  Gene #1108: 'CCT4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
CCT4 MUTATED 1 3 7
CCT4 WILD-TYPE 86 77 93
'CCT4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.175 (Fisher's exact test), Q value = 0.47

Table S11815.  Gene #1108: 'CCT4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
CCT4 MUTATED 4 2 6
CCT4 WILD-TYPE 85 158 132
'CCT4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.393 (Fisher's exact test), Q value = 0.72

Table S11816.  Gene #1108: 'CCT4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
CCT4 MUTATED 7 2 3
CCT4 WILD-TYPE 175 131 69
'CCT4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.46 (Fisher's exact test), Q value = 0.79

Table S11817.  Gene #1108: 'CCT4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
CCT4 MUTATED 3 2 5 4
CCT4 WILD-TYPE 109 94 87 182
'CCT4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.724 (Fisher's exact test), Q value = 0.99

Table S11818.  Gene #1108: 'CCT4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
CCT4 MUTATED 3 2 2 1 2 3 1
CCT4 WILD-TYPE 57 48 47 39 61 122 98
'CCT4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.571 (Fisher's exact test), Q value = 0.88

Table S11819.  Gene #1108: 'CCT4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
CCT4 MUTATED 6 2 2 4
CCT4 WILD-TYPE 124 76 66 192
'CCT4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.541 (Fisher's exact test), Q value = 0.86

Table S11820.  Gene #1108: 'CCT4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
CCT4 MUTATED 1 4 0 5 1 1 1 0 1
CCT4 WILD-TYPE 39 58 28 75 68 47 42 28 73
'CCT4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0606 (Fisher's exact test), Q value = 0.27

Table S11821.  Gene #1108: 'CCT4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
CCT4 MUTATED 0 0 1 2
CCT4 WILD-TYPE 33 31 26 17
'CCT4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.377 (Fisher's exact test), Q value = 0.71

Table S11822.  Gene #1108: 'CCT4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
CCT4 MUTATED 2 1 0 0
CCT4 WILD-TYPE 52 9 24 22
'MAP3K12 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.275 (Fisher's exact test), Q value = 0.6

Table S11823.  Gene #1109: 'MAP3K12 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
MAP3K12 MUTATED 0 1 2 3
MAP3K12 WILD-TYPE 46 57 62 40
'MAP3K12 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S11824.  Gene #1109: 'MAP3K12 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
MAP3K12 MUTATED 1 3 2
MAP3K12 WILD-TYPE 50 80 75
'MAP3K12 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.105 (Fisher's exact test), Q value = 0.36

Table S11825.  Gene #1109: 'MAP3K12 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
MAP3K12 MUTATED 9 3 1 1
MAP3K12 WILD-TYPE 169 180 100 19
'MAP3K12 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.125 (Fisher's exact test), Q value = 0.39

Table S11826.  Gene #1109: 'MAP3K12 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
MAP3K12 MUTATED 1 1 6
MAP3K12 WILD-TYPE 86 79 94
'MAP3K12 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.749 (Fisher's exact test), Q value = 1

Table S11827.  Gene #1109: 'MAP3K12 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
MAP3K12 MUTATED 3 6 3
MAP3K12 WILD-TYPE 86 154 135
'MAP3K12 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.286 (Fisher's exact test), Q value = 0.61

Table S11828.  Gene #1109: 'MAP3K12 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
MAP3K12 MUTATED 3 6 3
MAP3K12 WILD-TYPE 179 127 69
'MAP3K12 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.3 (Fisher's exact test), Q value = 0.63

Table S11829.  Gene #1109: 'MAP3K12 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
MAP3K12 MUTATED 1 5 3 5
MAP3K12 WILD-TYPE 111 91 89 181
'MAP3K12 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.406 (Fisher's exact test), Q value = 0.73

Table S11830.  Gene #1109: 'MAP3K12 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
MAP3K12 MUTATED 1 1 4 1 1 2 4
MAP3K12 WILD-TYPE 59 49 45 39 62 123 95
'MAP3K12 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.213 (Fisher's exact test), Q value = 0.52

Table S11831.  Gene #1109: 'MAP3K12 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
MAP3K12 MUTATED 6 0 1 7
MAP3K12 WILD-TYPE 124 78 67 189
'MAP3K12 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.162 (Fisher's exact test), Q value = 0.46

Table S11832.  Gene #1109: 'MAP3K12 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
MAP3K12 MUTATED 1 3 1 1 6 0 0 0 2
MAP3K12 WILD-TYPE 39 59 27 79 63 48 43 28 72
'MAP3K12 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0025 (Fisher's exact test), Q value = 0.043

Table S11833.  Gene #1109: 'MAP3K12 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
MAP3K12 MUTATED 0 1 0 4
MAP3K12 WILD-TYPE 33 30 27 15

Figure S3131.  Get High-res Image Gene #1109: 'MAP3K12 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'MAP3K12 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.189 (Fisher's exact test), Q value = 0.49

Table S11834.  Gene #1109: 'MAP3K12 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
MAP3K12 MUTATED 2 0 3 0
MAP3K12 WILD-TYPE 52 10 21 22
'FGD3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0173 (Fisher's exact test), Q value = 0.13

Table S11835.  Gene #1110: 'FGD3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
FGD3 MUTATED 3 0 0 0
FGD3 WILD-TYPE 43 58 64 43

Figure S3132.  Get High-res Image Gene #1110: 'FGD3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'FGD3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.186 (Fisher's exact test), Q value = 0.49

Table S11836.  Gene #1110: 'FGD3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
FGD3 MUTATED 2 0 1
FGD3 WILD-TYPE 49 83 76
'FGD3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00546 (Fisher's exact test), Q value = 0.067

Table S11837.  Gene #1110: 'FGD3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
FGD3 MUTATED 9 0 3 1
FGD3 WILD-TYPE 169 183 98 19

Figure S3133.  Get High-res Image Gene #1110: 'FGD3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'FGD3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00673 (Fisher's exact test), Q value = 0.075

Table S11838.  Gene #1110: 'FGD3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
FGD3 MUTATED 8 0 3
FGD3 WILD-TYPE 79 80 97

Figure S3134.  Get High-res Image Gene #1110: 'FGD3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'FGD3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0785 (Fisher's exact test), Q value = 0.3

Table S11839.  Gene #1110: 'FGD3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
FGD3 MUTATED 2 2 8
FGD3 WILD-TYPE 87 158 130
'FGD3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.132 (Fisher's exact test), Q value = 0.41

Table S11840.  Gene #1110: 'FGD3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
FGD3 MUTATED 8 1 3
FGD3 WILD-TYPE 174 132 69
'FGD3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0736 (Fisher's exact test), Q value = 0.29

Table S11841.  Gene #1110: 'FGD3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
FGD3 MUTATED 1 5 5 3
FGD3 WILD-TYPE 111 91 87 183
'FGD3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00024 (Fisher's exact test), Q value = 0.0094

Table S11842.  Gene #1110: 'FGD3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
FGD3 MUTATED 1 0 8 1 1 1 2
FGD3 WILD-TYPE 59 50 41 39 62 124 97

Figure S3135.  Get High-res Image Gene #1110: 'FGD3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'FGD3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0782 (Fisher's exact test), Q value = 0.3

Table S11843.  Gene #1110: 'FGD3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
FGD3 MUTATED 8 2 0 4
FGD3 WILD-TYPE 122 76 68 192
'FGD3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0672 (Fisher's exact test), Q value = 0.28

Table S11844.  Gene #1110: 'FGD3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
FGD3 MUTATED 0 4 0 2 6 1 1 0 0
FGD3 WILD-TYPE 40 58 28 78 63 47 42 28 74
'FGD3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.392 (Fisher's exact test), Q value = 0.72

Table S11845.  Gene #1110: 'FGD3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
FGD3 MUTATED 2 1 0 2
FGD3 WILD-TYPE 31 30 27 17
'FGD3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.573 (Fisher's exact test), Q value = 0.88

Table S11846.  Gene #1110: 'FGD3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
FGD3 MUTATED 3 0 2 0
FGD3 WILD-TYPE 51 10 22 22
'ACAT2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0239 (Fisher's exact test), Q value = 0.16

Table S11847.  Gene #1111: 'ACAT2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ACAT2 MUTATED 6 0 2 1
ACAT2 WILD-TYPE 172 183 99 19

Figure S3136.  Get High-res Image Gene #1111: 'ACAT2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ACAT2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.891 (Fisher's exact test), Q value = 1

Table S11848.  Gene #1111: 'ACAT2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ACAT2 MUTATED 3 2 2
ACAT2 WILD-TYPE 84 78 98
'ACAT2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.794 (Fisher's exact test), Q value = 1

Table S11849.  Gene #1111: 'ACAT2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ACAT2 MUTATED 1 4 2
ACAT2 WILD-TYPE 88 156 136
'ACAT2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.422 (Fisher's exact test), Q value = 0.75

Table S11850.  Gene #1111: 'ACAT2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ACAT2 MUTATED 2 4 1
ACAT2 WILD-TYPE 180 129 71
'ACAT2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.601 (Fisher's exact test), Q value = 0.9

Table S11851.  Gene #1111: 'ACAT2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ACAT2 MUTATED 2 3 2 2
ACAT2 WILD-TYPE 110 93 90 184
'ACAT2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0777 (Fisher's exact test), Q value = 0.3

Table S11852.  Gene #1111: 'ACAT2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ACAT2 MUTATED 3 1 2 1 0 0 2
ACAT2 WILD-TYPE 57 49 47 39 63 125 97
'ACAT2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0841 (Fisher's exact test), Q value = 0.31

Table S11853.  Gene #1111: 'ACAT2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ACAT2 MUTATED 6 1 0 2
ACAT2 WILD-TYPE 124 77 68 194
'ACAT2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.377 (Fisher's exact test), Q value = 0.71

Table S11854.  Gene #1111: 'ACAT2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ACAT2 MUTATED 2 1 1 3 2 0 0 0 0
ACAT2 WILD-TYPE 38 61 27 77 67 48 43 28 74
'ACAT2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0593 (Fisher's exact test), Q value = 0.27

Table S11855.  Gene #1111: 'ACAT2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
ACAT2 MUTATED 0 0 1 2
ACAT2 WILD-TYPE 33 31 26 17
'ACAT2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.698 (Fisher's exact test), Q value = 0.97

Table S11856.  Gene #1111: 'ACAT2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
ACAT2 MUTATED 1 0 1 1
ACAT2 WILD-TYPE 53 10 23 21
'PRRT2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.152 (Fisher's exact test), Q value = 0.44

Table S11857.  Gene #1112: 'PRRT2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
PRRT2 MUTATED 4 0 2 0
PRRT2 WILD-TYPE 174 183 99 20
'PRRT2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0658 (Fisher's exact test), Q value = 0.28

Table S11858.  Gene #1112: 'PRRT2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
PRRT2 MUTATED 1 0 5
PRRT2 WILD-TYPE 86 80 95
'PRRT2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.358 (Fisher's exact test), Q value = 0.69

Table S11859.  Gene #1112: 'PRRT2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
PRRT2 MUTATED 0 1 3
PRRT2 WILD-TYPE 89 159 135
'PRRT2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.184 (Fisher's exact test), Q value = 0.48

Table S11860.  Gene #1112: 'PRRT2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
PRRT2 MUTATED 4 0 0
PRRT2 WILD-TYPE 178 133 72
'PRRT2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00575 (Fisher's exact test), Q value = 0.069

Table S11861.  Gene #1112: 'PRRT2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
PRRT2 MUTATED 0 4 2 0
PRRT2 WILD-TYPE 112 92 90 186

Figure S3137.  Get High-res Image Gene #1112: 'PRRT2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'PRRT2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0014 (Fisher's exact test), Q value = 0.031

Table S11862.  Gene #1112: 'PRRT2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
PRRT2 MUTATED 1 1 4 0 0 0 0
PRRT2 WILD-TYPE 59 49 45 40 63 125 99

Figure S3138.  Get High-res Image Gene #1112: 'PRRT2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'PRRT2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.149 (Fisher's exact test), Q value = 0.43

Table S11863.  Gene #1112: 'PRRT2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
PRRT2 MUTATED 4 0 1 1
PRRT2 WILD-TYPE 126 78 67 195
'PRRT2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.818 (Fisher's exact test), Q value = 1

Table S11864.  Gene #1112: 'PRRT2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
PRRT2 MUTATED 1 1 0 1 2 0 1 0 0
PRRT2 WILD-TYPE 39 61 28 79 67 48 42 28 74
'C14ORF50 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.222 (Fisher's exact test), Q value = 0.54

Table S11865.  Gene #1113: 'C14ORF50 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
C14ORF50 MUTATED 2 1 0 2
C14ORF50 WILD-TYPE 44 57 64 41
'C14ORF50 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0462 (Fisher's exact test), Q value = 0.23

Table S11866.  Gene #1113: 'C14ORF50 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
C14ORF50 MUTATED 3 0 2
C14ORF50 WILD-TYPE 48 83 75

Figure S3139.  Get High-res Image Gene #1113: 'C14ORF50 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'C14ORF50 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.206 (Fisher's exact test), Q value = 0.51

Table S11867.  Gene #1113: 'C14ORF50 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
C14ORF50 MUTATED 6 1 1 0
C14ORF50 WILD-TYPE 172 182 100 20
'C14ORF50 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.112 (Fisher's exact test), Q value = 0.37

Table S11868.  Gene #1113: 'C14ORF50 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
C14ORF50 MUTATED 0 0 3
C14ORF50 WILD-TYPE 87 80 97
'C14ORF50 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.765 (Fisher's exact test), Q value = 1

Table S11869.  Gene #1113: 'C14ORF50 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
C14ORF50 MUTATED 2 2 2
C14ORF50 WILD-TYPE 87 158 136
'C14ORF50 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.167 (Fisher's exact test), Q value = 0.46

Table S11870.  Gene #1113: 'C14ORF50 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
C14ORF50 MUTATED 2 1 3
C14ORF50 WILD-TYPE 180 132 69
'C14ORF50 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.336 (Fisher's exact test), Q value = 0.66

Table S11871.  Gene #1113: 'C14ORF50 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
C14ORF50 MUTATED 0 1 2 5
C14ORF50 WILD-TYPE 112 95 90 181
'C14ORF50 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.171 (Fisher's exact test), Q value = 0.47

Table S11872.  Gene #1113: 'C14ORF50 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
C14ORF50 MUTATED 0 0 3 0 0 2 3
C14ORF50 WILD-TYPE 60 50 46 40 63 123 96
'C14ORF50 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.367 (Fisher's exact test), Q value = 0.7

Table S11873.  Gene #1113: 'C14ORF50 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
C14ORF50 MUTATED 1 1 0 6
C14ORF50 WILD-TYPE 129 77 68 190
'C14ORF50 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.697 (Fisher's exact test), Q value = 0.97

Table S11874.  Gene #1113: 'C14ORF50 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
C14ORF50 MUTATED 0 1 0 1 3 0 0 1 2
C14ORF50 WILD-TYPE 40 61 28 79 66 48 43 27 72
'KCNG4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.601 (Fisher's exact test), Q value = 0.9

Table S11875.  Gene #1114: 'KCNG4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
KCNG4 MUTATED 4 3 2 1
KCNG4 WILD-TYPE 174 180 99 19
'KCNG4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.396 (Fisher's exact test), Q value = 0.72

Table S11876.  Gene #1114: 'KCNG4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
KCNG4 MUTATED 2 1 5
KCNG4 WILD-TYPE 85 79 95
'KCNG4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.201 (Fisher's exact test), Q value = 0.51

Table S11877.  Gene #1114: 'KCNG4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
KCNG4 MUTATED 1 6 1
KCNG4 WILD-TYPE 88 154 137
'KCNG4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0598 (Fisher's exact test), Q value = 0.27

Table S11878.  Gene #1114: 'KCNG4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
KCNG4 MUTATED 2 6 0
KCNG4 WILD-TYPE 180 127 72
'KCNG4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.545 (Fisher's exact test), Q value = 0.86

Table S11879.  Gene #1114: 'KCNG4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
KCNG4 MUTATED 3 3 2 2
KCNG4 WILD-TYPE 109 93 90 184
'KCNG4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0206 (Fisher's exact test), Q value = 0.14

Table S11880.  Gene #1114: 'KCNG4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
KCNG4 MUTATED 3 2 3 0 0 0 2
KCNG4 WILD-TYPE 57 48 46 40 63 125 97

Figure S3140.  Get High-res Image Gene #1114: 'KCNG4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'KCNG4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0693 (Fisher's exact test), Q value = 0.28

Table S11881.  Gene #1114: 'KCNG4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
KCNG4 MUTATED 6 0 2 2
KCNG4 WILD-TYPE 124 78 66 194
'KCNG4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.703 (Fisher's exact test), Q value = 0.97

Table S11882.  Gene #1114: 'KCNG4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
KCNG4 MUTATED 2 1 1 2 1 0 2 0 1
KCNG4 WILD-TYPE 38 61 27 78 68 48 41 28 73
'KCNG4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.231 (Fisher's exact test), Q value = 0.55

Table S11883.  Gene #1114: 'KCNG4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
KCNG4 MUTATED 3 0 1 2
KCNG4 WILD-TYPE 30 31 26 17
'KCNG4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.921 (Fisher's exact test), Q value = 1

Table S11884.  Gene #1114: 'KCNG4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
KCNG4 MUTATED 3 0 2 1
KCNG4 WILD-TYPE 51 10 22 21
'ANKRD23 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.388 (Fisher's exact test), Q value = 0.71

Table S11885.  Gene #1115: 'ANKRD23 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ANKRD23 MUTATED 4 1 0 0
ANKRD23 WILD-TYPE 174 182 101 20
'ANKRD23 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.385 (Fisher's exact test), Q value = 0.71

Table S11886.  Gene #1115: 'ANKRD23 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ANKRD23 MUTATED 2 0 3
ANKRD23 WILD-TYPE 85 80 97
'ANKRD23 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.165 (Fisher's exact test), Q value = 0.46

Table S11887.  Gene #1115: 'ANKRD23 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ANKRD23 MUTATED 1 0 3
ANKRD23 WILD-TYPE 88 160 135
'ANKRD23 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S11888.  Gene #1115: 'ANKRD23 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ANKRD23 MUTATED 2 1 1
ANKRD23 WILD-TYPE 180 132 71
'ANKRD23 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00374 (Fisher's exact test), Q value = 0.056

Table S11889.  Gene #1115: 'ANKRD23 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ANKRD23 MUTATED 0 4 1 0
ANKRD23 WILD-TYPE 112 92 91 186

Figure S3141.  Get High-res Image Gene #1115: 'ANKRD23 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'ANKRD23 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00018 (Fisher's exact test), Q value = 0.0078

Table S11890.  Gene #1115: 'ANKRD23 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ANKRD23 MUTATED 0 0 4 1 0 0 0
ANKRD23 WILD-TYPE 60 50 45 39 63 125 99

Figure S3142.  Get High-res Image Gene #1115: 'ANKRD23 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ANKRD23 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.325 (Fisher's exact test), Q value = 0.65

Table S11891.  Gene #1115: 'ANKRD23 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ANKRD23 MUTATED 3 0 1 1
ANKRD23 WILD-TYPE 127 78 67 195
'ANKRD23 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0426 (Fisher's exact test), Q value = 0.22

Table S11892.  Gene #1115: 'ANKRD23 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ANKRD23 MUTATED 0 0 0 0 3 0 2 0 0
ANKRD23 WILD-TYPE 40 62 28 80 66 48 41 28 74

Figure S3143.  Get High-res Image Gene #1115: 'ANKRD23 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'KIAA0556 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00922 (Fisher's exact test), Q value = 0.09

Table S11893.  Gene #1116: 'KIAA0556 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
KIAA0556 MUTATED 3 0 0 3
KIAA0556 WILD-TYPE 43 58 64 40

Figure S3144.  Get High-res Image Gene #1116: 'KIAA0556 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'KIAA0556 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0153 (Fisher's exact test), Q value = 0.12

Table S11894.  Gene #1116: 'KIAA0556 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
KIAA0556 MUTATED 4 0 2
KIAA0556 WILD-TYPE 47 83 75

Figure S3145.  Get High-res Image Gene #1116: 'KIAA0556 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'KIAA0556 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.019 (Fisher's exact test), Q value = 0.14

Table S11895.  Gene #1116: 'KIAA0556 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
KIAA0556 MUTATED 16 4 3 1
KIAA0556 WILD-TYPE 162 179 98 19

Figure S3146.  Get High-res Image Gene #1116: 'KIAA0556 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'KIAA0556 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.109 (Fisher's exact test), Q value = 0.37

Table S11896.  Gene #1116: 'KIAA0556 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
KIAA0556 MUTATED 9 2 6
KIAA0556 WILD-TYPE 78 78 94
'KIAA0556 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0421 (Fisher's exact test), Q value = 0.22

Table S11897.  Gene #1116: 'KIAA0556 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
KIAA0556 MUTATED 3 3 11
KIAA0556 WILD-TYPE 86 157 127

Figure S3147.  Get High-res Image Gene #1116: 'KIAA0556 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'KIAA0556 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.274 (Fisher's exact test), Q value = 0.6

Table S11898.  Gene #1116: 'KIAA0556 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
KIAA0556 MUTATED 11 5 1
KIAA0556 WILD-TYPE 171 128 71
'KIAA0556 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.553 (Fisher's exact test), Q value = 0.87

Table S11899.  Gene #1116: 'KIAA0556 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
KIAA0556 MUTATED 5 5 7 7
KIAA0556 WILD-TYPE 107 91 85 179
'KIAA0556 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 3e-04 (Fisher's exact test), Q value = 0.011

Table S11900.  Gene #1116: 'KIAA0556 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
KIAA0556 MUTATED 3 2 10 2 1 1 5
KIAA0556 WILD-TYPE 57 48 39 38 62 124 94

Figure S3148.  Get High-res Image Gene #1116: 'KIAA0556 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'KIAA0556 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.213 (Fisher's exact test), Q value = 0.52

Table S11901.  Gene #1116: 'KIAA0556 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
KIAA0556 MUTATED 9 6 2 6
KIAA0556 WILD-TYPE 121 72 66 190
'KIAA0556 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0911 (Fisher's exact test), Q value = 0.33

Table S11902.  Gene #1116: 'KIAA0556 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
KIAA0556 MUTATED 2 8 1 1 5 3 1 0 2
KIAA0556 WILD-TYPE 38 54 27 79 64 45 42 28 72
'KIAA0556 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.669 (Fisher's exact test), Q value = 0.95

Table S11903.  Gene #1116: 'KIAA0556 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
KIAA0556 MUTATED 1 1 1 2
KIAA0556 WILD-TYPE 32 30 26 17
'KIAA0556 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.631 (Fisher's exact test), Q value = 0.93

Table S11904.  Gene #1116: 'KIAA0556 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
KIAA0556 MUTATED 4 0 0 1
KIAA0556 WILD-TYPE 50 10 24 21
'SLC25A44 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S11905.  Gene #1117: 'SLC25A44 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
SLC25A44 MUTATED 2 2 1 0
SLC25A44 WILD-TYPE 176 181 100 20
'SLC25A44 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.198 (Fisher's exact test), Q value = 0.5

Table S11906.  Gene #1117: 'SLC25A44 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
SLC25A44 MUTATED 1 2 0
SLC25A44 WILD-TYPE 86 78 100
'SLC25A44 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.682 (Fisher's exact test), Q value = 0.96

Table S11907.  Gene #1117: 'SLC25A44 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
SLC25A44 MUTATED 0 2 2
SLC25A44 WILD-TYPE 89 158 136
'SLC25A44 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.83 (Fisher's exact test), Q value = 1

Table S11908.  Gene #1117: 'SLC25A44 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
SLC25A44 MUTATED 2 2 0
SLC25A44 WILD-TYPE 180 131 72
'SLC25A44 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.729 (Fisher's exact test), Q value = 1

Table S11909.  Gene #1117: 'SLC25A44 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
SLC25A44 MUTATED 2 0 1 2
SLC25A44 WILD-TYPE 110 96 91 184
'SLC25A44 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.485 (Fisher's exact test), Q value = 0.81

Table S11910.  Gene #1117: 'SLC25A44 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
SLC25A44 MUTATED 1 1 0 0 1 0 2
SLC25A44 WILD-TYPE 59 49 49 40 62 125 97
'SLC25A44 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.304 (Fisher's exact test), Q value = 0.63

Table S11911.  Gene #1117: 'SLC25A44 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
SLC25A44 MUTATED 3 0 0 1
SLC25A44 WILD-TYPE 127 78 68 195
'SLC25A44 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.961 (Fisher's exact test), Q value = 1

Table S11912.  Gene #1117: 'SLC25A44 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
SLC25A44 MUTATED 0 1 0 1 1 1 0 0 0
SLC25A44 WILD-TYPE 40 61 28 79 68 47 43 28 74
'VPS13C MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0044 (Fisher's exact test), Q value = 0.061

Table S11913.  Gene #1118: 'VPS13C MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
VPS13C MUTATED 2 0 3 7
VPS13C WILD-TYPE 44 58 61 36

Figure S3149.  Get High-res Image Gene #1118: 'VPS13C MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'VPS13C MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.385 (Fisher's exact test), Q value = 0.71

Table S11914.  Gene #1118: 'VPS13C MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
VPS13C MUTATED 5 4 3
VPS13C WILD-TYPE 46 79 74
'VPS13C MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00045 (Fisher's exact test), Q value = 0.014

Table S11915.  Gene #1118: 'VPS13C MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
VPS13C MUTATED 21 4 3 0
VPS13C WILD-TYPE 157 179 98 20

Figure S3150.  Get High-res Image Gene #1118: 'VPS13C MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'VPS13C MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.104 (Fisher's exact test), Q value = 0.36

Table S11916.  Gene #1118: 'VPS13C MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
VPS13C MUTATED 5 1 8
VPS13C WILD-TYPE 82 79 92
'VPS13C MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.792 (Fisher's exact test), Q value = 1

Table S11917.  Gene #1118: 'VPS13C MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
VPS13C MUTATED 4 11 8
VPS13C WILD-TYPE 85 149 130
'VPS13C MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.636 (Fisher's exact test), Q value = 0.93

Table S11918.  Gene #1118: 'VPS13C MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
VPS13C MUTATED 10 10 3
VPS13C WILD-TYPE 172 123 69
'VPS13C MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.139 (Fisher's exact test), Q value = 0.41

Table S11919.  Gene #1118: 'VPS13C MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
VPS13C MUTATED 2 8 5 13
VPS13C WILD-TYPE 110 88 87 173
'VPS13C MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0477 (Fisher's exact test), Q value = 0.23

Table S11920.  Gene #1118: 'VPS13C MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
VPS13C MUTATED 2 2 5 1 3 3 12
VPS13C WILD-TYPE 58 48 44 39 60 122 87

Figure S3151.  Get High-res Image Gene #1118: 'VPS13C MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'VPS13C MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0646 (Fisher's exact test), Q value = 0.28

Table S11921.  Gene #1118: 'VPS13C MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
VPS13C MUTATED 7 4 0 16
VPS13C WILD-TYPE 123 74 68 180
'VPS13C MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0263 (Fisher's exact test), Q value = 0.16

Table S11922.  Gene #1118: 'VPS13C MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
VPS13C MUTATED 3 4 2 4 10 0 0 0 4
VPS13C WILD-TYPE 37 58 26 76 59 48 43 28 70

Figure S3152.  Get High-res Image Gene #1118: 'VPS13C MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'VPS13C MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.555 (Fisher's exact test), Q value = 0.87

Table S11923.  Gene #1118: 'VPS13C MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
VPS13C MUTATED 1 2 0 0
VPS13C WILD-TYPE 32 29 27 19
'VPS13C MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.38 (Fisher's exact test), Q value = 0.71

Table S11924.  Gene #1118: 'VPS13C MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
VPS13C MUTATED 2 1 0 0
VPS13C WILD-TYPE 52 9 24 22
'PGAP3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.631 (Fisher's exact test), Q value = 0.93

Table S11925.  Gene #1119: 'PGAP3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
PGAP3 MUTATED 1 1 0 1
PGAP3 WILD-TYPE 45 57 64 42
'PGAP3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.183 (Fisher's exact test), Q value = 0.48

Table S11926.  Gene #1119: 'PGAP3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
PGAP3 MUTATED 2 0 1
PGAP3 WILD-TYPE 49 83 76
'PGAP3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.129 (Fisher's exact test), Q value = 0.4

Table S11927.  Gene #1119: 'PGAP3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
PGAP3 MUTATED 5 1 1 1
PGAP3 WILD-TYPE 173 182 100 19
'PGAP3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S11928.  Gene #1119: 'PGAP3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
PGAP3 MUTATED 2 1 2
PGAP3 WILD-TYPE 85 79 98
'PGAP3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S11929.  Gene #1119: 'PGAP3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
PGAP3 MUTATED 1 3 2
PGAP3 WILD-TYPE 88 157 136
'PGAP3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.415 (Fisher's exact test), Q value = 0.74

Table S11930.  Gene #1119: 'PGAP3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
PGAP3 MUTATED 3 1 2
PGAP3 WILD-TYPE 179 132 70
'PGAP3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.559 (Fisher's exact test), Q value = 0.87

Table S11931.  Gene #1119: 'PGAP3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
PGAP3 MUTATED 1 3 2 2
PGAP3 WILD-TYPE 111 93 90 184
'PGAP3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.217 (Fisher's exact test), Q value = 0.53

Table S11932.  Gene #1119: 'PGAP3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
PGAP3 MUTATED 0 0 3 1 1 1 2
PGAP3 WILD-TYPE 60 50 46 39 62 124 97
'PGAP3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.379 (Fisher's exact test), Q value = 0.71

Table S11933.  Gene #1119: 'PGAP3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
PGAP3 MUTATED 2 3 0 3
PGAP3 WILD-TYPE 128 75 68 193
'PGAP3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.489 (Fisher's exact test), Q value = 0.82

Table S11934.  Gene #1119: 'PGAP3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
PGAP3 MUTATED 0 3 0 1 3 0 0 0 1
PGAP3 WILD-TYPE 40 59 28 79 66 48 43 28 73
'PGAP3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.193 (Fisher's exact test), Q value = 0.5

Table S11935.  Gene #1119: 'PGAP3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
PGAP3 MUTATED 0 1 1 2
PGAP3 WILD-TYPE 33 30 26 17
'PGAP3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.272 (Fisher's exact test), Q value = 0.6

Table S11936.  Gene #1119: 'PGAP3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
PGAP3 MUTATED 1 1 1 1
PGAP3 WILD-TYPE 53 9 23 21
'PARP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00189 (Fisher's exact test), Q value = 0.036

Table S11937.  Gene #1120: 'PARP1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
PARP1 MUTATED 11 1 1 2
PARP1 WILD-TYPE 167 182 100 18

Figure S3153.  Get High-res Image Gene #1120: 'PARP1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'PARP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.639 (Fisher's exact test), Q value = 0.93

Table S11938.  Gene #1120: 'PARP1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
PARP1 MUTATED 5 2 4
PARP1 WILD-TYPE 82 78 96
'PARP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.678 (Fisher's exact test), Q value = 0.96

Table S11939.  Gene #1120: 'PARP1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
PARP1 MUTATED 3 4 6
PARP1 WILD-TYPE 86 156 132
'PARP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.933 (Fisher's exact test), Q value = 1

Table S11940.  Gene #1120: 'PARP1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
PARP1 MUTATED 7 4 2
PARP1 WILD-TYPE 175 129 70
'PARP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.131 (Fisher's exact test), Q value = 0.4

Table S11941.  Gene #1120: 'PARP1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
PARP1 MUTATED 2 6 4 3
PARP1 WILD-TYPE 110 90 88 183
'PARP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00375 (Fisher's exact test), Q value = 0.056

Table S11942.  Gene #1120: 'PARP1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
PARP1 MUTATED 0 1 5 1 4 0 4
PARP1 WILD-TYPE 60 49 44 39 59 125 95

Figure S3154.  Get High-res Image Gene #1120: 'PARP1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'PARP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.84 (Fisher's exact test), Q value = 1

Table S11943.  Gene #1120: 'PARP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
PARP1 MUTATED 5 3 1 6
PARP1 WILD-TYPE 125 75 67 190
'PARP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0865 (Fisher's exact test), Q value = 0.32

Table S11944.  Gene #1120: 'PARP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
PARP1 MUTATED 3 4 1 0 4 0 1 1 1
PARP1 WILD-TYPE 37 58 27 80 65 48 42 27 73
'PARP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.146 (Fisher's exact test), Q value = 0.43

Table S11945.  Gene #1120: 'PARP1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
PARP1 MUTATED 3 0 0 1
PARP1 WILD-TYPE 30 31 27 18
'PARP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S11946.  Gene #1120: 'PARP1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
PARP1 MUTATED 2 0 1 1
PARP1 WILD-TYPE 52 10 23 21
'EPC1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.328 (Fisher's exact test), Q value = 0.66

Table S11947.  Gene #1121: 'EPC1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
EPC1 MUTATED 8 4 1 0
EPC1 WILD-TYPE 170 179 100 20
'EPC1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.74 (Fisher's exact test), Q value = 1

Table S11948.  Gene #1121: 'EPC1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
EPC1 MUTATED 4 2 5
EPC1 WILD-TYPE 83 78 95
'EPC1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.424 (Fisher's exact test), Q value = 0.75

Table S11949.  Gene #1121: 'EPC1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
EPC1 MUTATED 1 5 6
EPC1 WILD-TYPE 88 155 132
'EPC1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.246 (Fisher's exact test), Q value = 0.57

Table S11950.  Gene #1121: 'EPC1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
EPC1 MUTATED 7 5 0
EPC1 WILD-TYPE 175 128 72
'EPC1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.175 (Fisher's exact test), Q value = 0.47

Table S11951.  Gene #1121: 'EPC1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
EPC1 MUTATED 3 3 5 2
EPC1 WILD-TYPE 109 93 87 184
'EPC1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0449 (Fisher's exact test), Q value = 0.23

Table S11952.  Gene #1121: 'EPC1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
EPC1 MUTATED 1 2 3 1 4 0 2
EPC1 WILD-TYPE 59 48 46 39 59 125 97

Figure S3155.  Get High-res Image Gene #1121: 'EPC1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'EPC1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.086 (Fisher's exact test), Q value = 0.32

Table S11953.  Gene #1121: 'EPC1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
EPC1 MUTATED 6 4 1 2
EPC1 WILD-TYPE 124 74 67 194
'EPC1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0586 (Fisher's exact test), Q value = 0.26

Table S11954.  Gene #1121: 'EPC1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
EPC1 MUTATED 3 4 2 1 2 0 1 0 0
EPC1 WILD-TYPE 37 58 26 79 67 48 42 28 74
'EPC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.393 (Fisher's exact test), Q value = 0.72

Table S11955.  Gene #1121: 'EPC1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
EPC1 MUTATED 2 1 0 2
EPC1 WILD-TYPE 31 30 27 17
'EPC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.52 (Fisher's exact test), Q value = 0.84

Table S11956.  Gene #1121: 'EPC1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
EPC1 MUTATED 3 1 1 0
EPC1 WILD-TYPE 51 9 23 22
'ST6GALNAC3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.165 (Fisher's exact test), Q value = 0.46

Table S11957.  Gene #1122: 'ST6GALNAC3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ST6GALNAC3 MUTATED 9 3 1 0
ST6GALNAC3 WILD-TYPE 169 180 100 20
'ST6GALNAC3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.194 (Fisher's exact test), Q value = 0.5

Table S11958.  Gene #1122: 'ST6GALNAC3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ST6GALNAC3 MUTATED 6 2 2
ST6GALNAC3 WILD-TYPE 81 78 98
'ST6GALNAC3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.507 (Fisher's exact test), Q value = 0.83

Table S11959.  Gene #1122: 'ST6GALNAC3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ST6GALNAC3 MUTATED 2 4 7
ST6GALNAC3 WILD-TYPE 87 156 131
'ST6GALNAC3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.529 (Fisher's exact test), Q value = 0.85

Table S11960.  Gene #1122: 'ST6GALNAC3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ST6GALNAC3 MUTATED 8 4 1
ST6GALNAC3 WILD-TYPE 174 129 71
'ST6GALNAC3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00432 (Fisher's exact test), Q value = 0.06

Table S11961.  Gene #1122: 'ST6GALNAC3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ST6GALNAC3 MUTATED 2 1 8 2
ST6GALNAC3 WILD-TYPE 110 95 84 184

Figure S3156.  Get High-res Image Gene #1122: 'ST6GALNAC3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'ST6GALNAC3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00057 (Fisher's exact test), Q value = 0.017

Table S11962.  Gene #1122: 'ST6GALNAC3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ST6GALNAC3 MUTATED 3 0 5 0 4 0 1
ST6GALNAC3 WILD-TYPE 57 50 44 40 59 125 98

Figure S3157.  Get High-res Image Gene #1122: 'ST6GALNAC3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ST6GALNAC3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0241 (Fisher's exact test), Q value = 0.16

Table S11963.  Gene #1122: 'ST6GALNAC3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ST6GALNAC3 MUTATED 5 5 0 2
ST6GALNAC3 WILD-TYPE 125 73 68 194

Figure S3158.  Get High-res Image Gene #1122: 'ST6GALNAC3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'ST6GALNAC3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.291 (Fisher's exact test), Q value = 0.62

Table S11964.  Gene #1122: 'ST6GALNAC3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ST6GALNAC3 MUTATED 2 4 0 2 2 0 1 1 0
ST6GALNAC3 WILD-TYPE 38 58 28 78 67 48 42 27 74
'ST6GALNAC3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.647 (Fisher's exact test), Q value = 0.93

Table S11965.  Gene #1122: 'ST6GALNAC3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
ST6GALNAC3 MUTATED 1 2 0 1
ST6GALNAC3 WILD-TYPE 32 29 27 18
'ST6GALNAC3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.431 (Fisher's exact test), Q value = 0.76

Table S11966.  Gene #1122: 'ST6GALNAC3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
ST6GALNAC3 MUTATED 4 0 0 0
ST6GALNAC3 WILD-TYPE 50 10 24 22
'BRSK1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0175 (Fisher's exact test), Q value = 0.13

Table S11967.  Gene #1123: 'BRSK1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
BRSK1 MUTATED 5 0 1 2
BRSK1 WILD-TYPE 41 58 63 41

Figure S3159.  Get High-res Image Gene #1123: 'BRSK1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'BRSK1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00011 (Fisher's exact test), Q value = 0.0056

Table S11968.  Gene #1123: 'BRSK1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
BRSK1 MUTATED 7 0 1
BRSK1 WILD-TYPE 44 83 76

Figure S3160.  Get High-res Image Gene #1123: 'BRSK1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'BRSK1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00715 (Fisher's exact test), Q value = 0.078

Table S11969.  Gene #1123: 'BRSK1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
BRSK1 MUTATED 12 1 4 1
BRSK1 WILD-TYPE 166 182 97 19

Figure S3161.  Get High-res Image Gene #1123: 'BRSK1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'BRSK1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.236 (Fisher's exact test), Q value = 0.56

Table S11970.  Gene #1123: 'BRSK1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
BRSK1 MUTATED 1 3 6
BRSK1 WILD-TYPE 86 77 94
'BRSK1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.819 (Fisher's exact test), Q value = 1

Table S11971.  Gene #1123: 'BRSK1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
BRSK1 MUTATED 4 5 4
BRSK1 WILD-TYPE 85 155 134
'BRSK1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.189 (Fisher's exact test), Q value = 0.49

Table S11972.  Gene #1123: 'BRSK1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
BRSK1 MUTATED 4 4 5
BRSK1 WILD-TYPE 178 129 67
'BRSK1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.265 (Fisher's exact test), Q value = 0.59

Table S11973.  Gene #1123: 'BRSK1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
BRSK1 MUTATED 3 6 1 8
BRSK1 WILD-TYPE 109 90 91 178
'BRSK1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0935 (Fisher's exact test), Q value = 0.33

Table S11974.  Gene #1123: 'BRSK1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
BRSK1 MUTATED 2 2 4 1 1 1 7
BRSK1 WILD-TYPE 58 48 45 39 62 124 92
'BRSK1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.182 (Fisher's exact test), Q value = 0.48

Table S11975.  Gene #1123: 'BRSK1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
BRSK1 MUTATED 6 0 2 10
BRSK1 WILD-TYPE 124 78 66 186
'BRSK1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00049 (Fisher's exact test), Q value = 0.015

Table S11976.  Gene #1123: 'BRSK1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
BRSK1 MUTATED 0 1 0 3 11 0 2 0 1
BRSK1 WILD-TYPE 40 61 28 77 58 48 41 28 73

Figure S3162.  Get High-res Image Gene #1123: 'BRSK1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'BRSK1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.136 (Fisher's exact test), Q value = 0.41

Table S11977.  Gene #1123: 'BRSK1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
BRSK1 MUTATED 1 0 0 2
BRSK1 WILD-TYPE 32 31 27 17
'BRSK1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.694 (Fisher's exact test), Q value = 0.97

Table S11978.  Gene #1123: 'BRSK1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
BRSK1 MUTATED 1 0 1 1
BRSK1 WILD-TYPE 53 10 23 21
'FAM91A1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0639 (Fisher's exact test), Q value = 0.27

Table S11979.  Gene #1124: 'FAM91A1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
FAM91A1 MUTATED 1 0 0 2
FAM91A1 WILD-TYPE 45 58 64 41
'FAM91A1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S11980.  Gene #1124: 'FAM91A1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
FAM91A1 MUTATED 1 1 1
FAM91A1 WILD-TYPE 50 82 76
'FAM91A1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.212 (Fisher's exact test), Q value = 0.52

Table S11981.  Gene #1124: 'FAM91A1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
FAM91A1 MUTATED 7 4 0 0
FAM91A1 WILD-TYPE 171 179 101 20
'FAM91A1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.436 (Fisher's exact test), Q value = 0.76

Table S11982.  Gene #1124: 'FAM91A1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
FAM91A1 MUTATED 3 1 5
FAM91A1 WILD-TYPE 84 79 95
'FAM91A1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.103 (Fisher's exact test), Q value = 0.36

Table S11983.  Gene #1124: 'FAM91A1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
FAM91A1 MUTATED 0 7 3
FAM91A1 WILD-TYPE 89 153 135
'FAM91A1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.06 (Fisher's exact test), Q value = 0.27

Table S11984.  Gene #1124: 'FAM91A1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
FAM91A1 MUTATED 3 7 0
FAM91A1 WILD-TYPE 179 126 72
'FAM91A1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.182 (Fisher's exact test), Q value = 0.48

Table S11985.  Gene #1124: 'FAM91A1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
FAM91A1 MUTATED 1 5 3 3
FAM91A1 WILD-TYPE 111 91 89 183
'FAM91A1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0326 (Fisher's exact test), Q value = 0.18

Table S11986.  Gene #1124: 'FAM91A1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
FAM91A1 MUTATED 2 4 2 0 2 0 2
FAM91A1 WILD-TYPE 58 46 47 40 61 125 97

Figure S3163.  Get High-res Image Gene #1124: 'FAM91A1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'FAM91A1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.905 (Fisher's exact test), Q value = 1

Table S11987.  Gene #1124: 'FAM91A1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
FAM91A1 MUTATED 4 2 2 4
FAM91A1 WILD-TYPE 126 76 66 192
'FAM91A1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.808 (Fisher's exact test), Q value = 1

Table S11988.  Gene #1124: 'FAM91A1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
FAM91A1 MUTATED 2 2 1 2 3 0 1 0 1
FAM91A1 WILD-TYPE 38 60 27 78 66 48 42 28 73
'FAM119A MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0657 (Fisher's exact test), Q value = 0.28

Table S11989.  Gene #1125: 'FAM119A MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
FAM119A MUTATED 1 0 0 2
FAM119A WILD-TYPE 45 58 64 41
'FAM119A MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.184 (Fisher's exact test), Q value = 0.48

Table S11990.  Gene #1125: 'FAM119A MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
FAM119A MUTATED 2 0 1
FAM119A WILD-TYPE 49 83 76
'FAM119A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.184 (Fisher's exact test), Q value = 0.48

Table S11991.  Gene #1125: 'FAM119A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
FAM119A MUTATED 5 1 0 0
FAM119A WILD-TYPE 173 182 101 20
'FAM119A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.78 (Fisher's exact test), Q value = 1

Table S11992.  Gene #1125: 'FAM119A MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
FAM119A MUTATED 1 0 2
FAM119A WILD-TYPE 86 80 98
'FAM119A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.796 (Fisher's exact test), Q value = 1

Table S11993.  Gene #1125: 'FAM119A MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
FAM119A MUTATED 0 2 1
FAM119A WILD-TYPE 89 158 137
'FAM119A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.591 (Fisher's exact test), Q value = 0.9

Table S11994.  Gene #1125: 'FAM119A MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
FAM119A MUTATED 1 2 0
FAM119A WILD-TYPE 181 131 72
'FAM119A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S11995.  Gene #1125: 'FAM119A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
FAM119A MUTATED 1 1 1 3
FAM119A WILD-TYPE 111 95 91 183
'FAM119A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.235 (Fisher's exact test), Q value = 0.56

Table S11996.  Gene #1125: 'FAM119A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
FAM119A MUTATED 2 1 1 0 0 0 2
FAM119A WILD-TYPE 58 49 48 40 63 125 97
'FAM119A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.866 (Fisher's exact test), Q value = 1

Table S11997.  Gene #1125: 'FAM119A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
FAM119A MUTATED 2 1 0 2
FAM119A WILD-TYPE 128 77 68 194
'FAM119A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.8 (Fisher's exact test), Q value = 1

Table S11998.  Gene #1125: 'FAM119A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
FAM119A MUTATED 1 1 0 1 2 0 0 0 0
FAM119A WILD-TYPE 39 61 28 79 67 48 43 28 74
'ZKSCAN2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00543 (Fisher's exact test), Q value = 0.067

Table S11999.  Gene #1126: 'ZKSCAN2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ZKSCAN2 MUTATED 2 0 0 4
ZKSCAN2 WILD-TYPE 44 58 64 39

Figure S3164.  Get High-res Image Gene #1126: 'ZKSCAN2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'ZKSCAN2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00166 (Fisher's exact test), Q value = 0.034

Table S12000.  Gene #1126: 'ZKSCAN2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ZKSCAN2 MUTATED 5 0 1
ZKSCAN2 WILD-TYPE 46 83 76

Figure S3165.  Get High-res Image Gene #1126: 'ZKSCAN2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'ZKSCAN2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.176 (Fisher's exact test), Q value = 0.48

Table S12001.  Gene #1126: 'ZKSCAN2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ZKSCAN2 MUTATED 8 3 6 0
ZKSCAN2 WILD-TYPE 170 180 95 20
'ZKSCAN2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.74 (Fisher's exact test), Q value = 1

Table S12002.  Gene #1126: 'ZKSCAN2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ZKSCAN2 MUTATED 4 2 5
ZKSCAN2 WILD-TYPE 83 78 95
'ZKSCAN2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.268 (Fisher's exact test), Q value = 0.59

Table S12003.  Gene #1126: 'ZKSCAN2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ZKSCAN2 MUTATED 2 2 6
ZKSCAN2 WILD-TYPE 87 158 132
'ZKSCAN2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.526 (Fisher's exact test), Q value = 0.85

Table S12004.  Gene #1126: 'ZKSCAN2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ZKSCAN2 MUTATED 5 2 3
ZKSCAN2 WILD-TYPE 177 131 69
'ZKSCAN2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.744 (Fisher's exact test), Q value = 1

Table S12005.  Gene #1126: 'ZKSCAN2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ZKSCAN2 MUTATED 4 5 2 6
ZKSCAN2 WILD-TYPE 108 91 90 180
'ZKSCAN2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0827 (Fisher's exact test), Q value = 0.31

Table S12006.  Gene #1126: 'ZKSCAN2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ZKSCAN2 MUTATED 2 2 2 2 3 0 6
ZKSCAN2 WILD-TYPE 58 48 47 38 60 125 93
'ZKSCAN2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.707 (Fisher's exact test), Q value = 0.98

Table S12007.  Gene #1126: 'ZKSCAN2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ZKSCAN2 MUTATED 5 1 3 7
ZKSCAN2 WILD-TYPE 125 77 65 189
'ZKSCAN2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.317 (Fisher's exact test), Q value = 0.65

Table S12008.  Gene #1126: 'ZKSCAN2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ZKSCAN2 MUTATED 3 2 2 1 4 0 2 0 2
ZKSCAN2 WILD-TYPE 37 60 26 79 65 48 41 28 72
'ZKSCAN2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.181 (Fisher's exact test), Q value = 0.48

Table S12009.  Gene #1126: 'ZKSCAN2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
ZKSCAN2 MUTATED 1 0 3 1
ZKSCAN2 WILD-TYPE 32 31 24 18
'ZKSCAN2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.293 (Fisher's exact test), Q value = 0.62

Table S12010.  Gene #1126: 'ZKSCAN2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
ZKSCAN2 MUTATED 1 1 2 1
ZKSCAN2 WILD-TYPE 53 9 22 21
'HLA-B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00014 (Fisher's exact test), Q value = 0.0066

Table S12011.  Gene #1127: 'HLA-B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
HLA-B MUTATED 11 0 0 1
HLA-B WILD-TYPE 167 183 101 19

Figure S3166.  Get High-res Image Gene #1127: 'HLA-B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'HLA-B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.147 (Fisher's exact test), Q value = 0.43

Table S12012.  Gene #1127: 'HLA-B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
HLA-B MUTATED 3 1 7
HLA-B WILD-TYPE 84 79 93
'HLA-B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.183 (Fisher's exact test), Q value = 0.48

Table S12013.  Gene #1127: 'HLA-B MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
HLA-B MUTATED 0 6 5
HLA-B WILD-TYPE 89 154 133
'HLA-B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.195 (Fisher's exact test), Q value = 0.5

Table S12014.  Gene #1127: 'HLA-B MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
HLA-B MUTATED 5 6 0
HLA-B WILD-TYPE 177 127 72
'HLA-B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00401 (Fisher's exact test), Q value = 0.058

Table S12015.  Gene #1127: 'HLA-B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
HLA-B MUTATED 1 7 3 1
HLA-B WILD-TYPE 111 89 89 185

Figure S3167.  Get High-res Image Gene #1127: 'HLA-B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'HLA-B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 6e-04 (Fisher's exact test), Q value = 0.018

Table S12016.  Gene #1127: 'HLA-B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
HLA-B MUTATED 1 2 5 3 0 0 1
HLA-B WILD-TYPE 59 48 44 37 63 125 98

Figure S3168.  Get High-res Image Gene #1127: 'HLA-B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'HLA-B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.244 (Fisher's exact test), Q value = 0.57

Table S12017.  Gene #1127: 'HLA-B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
HLA-B MUTATED 6 1 0 5
HLA-B WILD-TYPE 124 77 68 191
'HLA-B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00266 (Fisher's exact test), Q value = 0.045

Table S12018.  Gene #1127: 'HLA-B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
HLA-B MUTATED 4 2 2 0 4 0 0 0 0
HLA-B WILD-TYPE 36 60 26 80 65 48 43 28 74

Figure S3169.  Get High-res Image Gene #1127: 'HLA-B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'NHLRC2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.127 (Fisher's exact test), Q value = 0.4

Table S12019.  Gene #1128: 'NHLRC2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
NHLRC2 MUTATED 7 1 1 0
NHLRC2 WILD-TYPE 171 182 100 20
'NHLRC2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.18 (Fisher's exact test), Q value = 0.48

Table S12020.  Gene #1128: 'NHLRC2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
NHLRC2 MUTATED 4 0 3
NHLRC2 WILD-TYPE 83 80 97
'NHLRC2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.04 (Fisher's exact test), Q value = 0.21

Table S12021.  Gene #1128: 'NHLRC2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
NHLRC2 MUTATED 0 7 1
NHLRC2 WILD-TYPE 89 153 137

Figure S3170.  Get High-res Image Gene #1128: 'NHLRC2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'NHLRC2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0409 (Fisher's exact test), Q value = 0.21

Table S12022.  Gene #1128: 'NHLRC2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
NHLRC2 MUTATED 1 6 1
NHLRC2 WILD-TYPE 181 127 71

Figure S3171.  Get High-res Image Gene #1128: 'NHLRC2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'NHLRC2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.401 (Fisher's exact test), Q value = 0.73

Table S12023.  Gene #1128: 'NHLRC2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
NHLRC2 MUTATED 1 4 1 3
NHLRC2 WILD-TYPE 111 92 91 183
'NHLRC2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.392 (Fisher's exact test), Q value = 0.72

Table S12024.  Gene #1128: 'NHLRC2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
NHLRC2 MUTATED 2 1 2 0 0 1 3
NHLRC2 WILD-TYPE 58 49 47 40 63 124 96
'NHLRC2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.205 (Fisher's exact test), Q value = 0.51

Table S12025.  Gene #1128: 'NHLRC2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
NHLRC2 MUTATED 5 0 0 4
NHLRC2 WILD-TYPE 125 78 68 192
'NHLRC2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.635 (Fisher's exact test), Q value = 0.93

Table S12026.  Gene #1128: 'NHLRC2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
NHLRC2 MUTATED 0 1 0 2 4 0 1 0 1
NHLRC2 WILD-TYPE 40 61 28 78 65 48 42 28 73
'NHLRC2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00805 (Fisher's exact test), Q value = 0.084

Table S12027.  Gene #1128: 'NHLRC2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
NHLRC2 MUTATED 0 0 1 3
NHLRC2 WILD-TYPE 33 31 26 16

Figure S3172.  Get High-res Image Gene #1128: 'NHLRC2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'NHLRC2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.129 (Fisher's exact test), Q value = 0.4

Table S12028.  Gene #1128: 'NHLRC2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
NHLRC2 MUTATED 1 0 3 0
NHLRC2 WILD-TYPE 53 10 21 22
'BST2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0935 (Fisher's exact test), Q value = 0.33

Table S12029.  Gene #1129: 'BST2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
BST2 MUTATED 5 0 1 0
BST2 WILD-TYPE 173 183 100 20
'BST2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.383 (Fisher's exact test), Q value = 0.71

Table S12030.  Gene #1129: 'BST2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
BST2 MUTATED 2 0 3
BST2 WILD-TYPE 85 80 97
'BST2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.333 (Fisher's exact test), Q value = 0.66

Table S12031.  Gene #1129: 'BST2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
BST2 MUTATED 1 1 4
BST2 WILD-TYPE 88 159 134
'BST2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0416 (Fisher's exact test), Q value = 0.21

Table S12032.  Gene #1129: 'BST2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
BST2 MUTATED 6 0 0
BST2 WILD-TYPE 176 133 72

Figure S3173.  Get High-res Image Gene #1129: 'BST2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'BST2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.104 (Fisher's exact test), Q value = 0.36

Table S12033.  Gene #1129: 'BST2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
BST2 MUTATED 0 3 2 1
BST2 WILD-TYPE 112 93 90 185
'BST2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0103 (Fisher's exact test), Q value = 0.097

Table S12034.  Gene #1129: 'BST2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
BST2 MUTATED 0 2 3 0 0 0 1
BST2 WILD-TYPE 60 48 46 40 63 125 98

Figure S3174.  Get High-res Image Gene #1129: 'BST2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'BST2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.181 (Fisher's exact test), Q value = 0.48

Table S12035.  Gene #1129: 'BST2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
BST2 MUTATED 4 1 0 1
BST2 WILD-TYPE 126 77 68 195
'BST2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.114 (Fisher's exact test), Q value = 0.37

Table S12036.  Gene #1129: 'BST2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
BST2 MUTATED 2 2 0 0 1 0 0 1 0
BST2 WILD-TYPE 38 60 28 80 68 48 43 27 74
'VASH1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0436 (Fisher's exact test), Q value = 0.22

Table S12037.  Gene #1130: 'VASH1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
VASH1 MUTATED 5 0 0 0
VASH1 WILD-TYPE 173 183 101 20

Figure S3175.  Get High-res Image Gene #1130: 'VASH1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'VASH1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0128 (Fisher's exact test), Q value = 0.11

Table S12038.  Gene #1130: 'VASH1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
VASH1 MUTATED 0 0 5
VASH1 WILD-TYPE 87 80 95

Figure S3176.  Get High-res Image Gene #1130: 'VASH1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'VASH1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.637 (Fisher's exact test), Q value = 0.93

Table S12039.  Gene #1130: 'VASH1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
VASH1 MUTATED 0 3 2
VASH1 WILD-TYPE 89 157 136
'VASH1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.718 (Fisher's exact test), Q value = 0.99

Table S12040.  Gene #1130: 'VASH1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
VASH1 MUTATED 3 2 0
VASH1 WILD-TYPE 179 131 72
'VASH1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0201 (Fisher's exact test), Q value = 0.14

Table S12041.  Gene #1130: 'VASH1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
VASH1 MUTATED 0 3 2 0
VASH1 WILD-TYPE 112 93 90 186

Figure S3177.  Get High-res Image Gene #1130: 'VASH1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'VASH1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 2e-05 (Fisher's exact test), Q value = 0.0017

Table S12042.  Gene #1130: 'VASH1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
VASH1 MUTATED 0 0 5 0 0 0 0
VASH1 WILD-TYPE 60 50 44 40 63 125 99

Figure S3178.  Get High-res Image Gene #1130: 'VASH1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'VASH1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.127 (Fisher's exact test), Q value = 0.4

Table S12043.  Gene #1130: 'VASH1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
VASH1 MUTATED 4 0 0 1
VASH1 WILD-TYPE 126 78 68 195
'VASH1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.213 (Fisher's exact test), Q value = 0.52

Table S12044.  Gene #1130: 'VASH1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
VASH1 MUTATED 1 1 0 0 3 0 0 0 0
VASH1 WILD-TYPE 39 61 28 80 66 48 43 28 74
'CT47B1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.81 (Fisher's exact test), Q value = 1

Table S12045.  Gene #1131: 'CT47B1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
CT47B1 MUTATED 2 4 2 0
CT47B1 WILD-TYPE 176 179 99 20
'CT47B1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S12046.  Gene #1131: 'CT47B1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
CT47B1 MUTATED 3 2 3
CT47B1 WILD-TYPE 84 78 97
'CT47B1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.614 (Fisher's exact test), Q value = 0.91

Table S12047.  Gene #1131: 'CT47B1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
CT47B1 MUTATED 1 2 4
CT47B1 WILD-TYPE 88 158 134
'CT47B1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.191 (Fisher's exact test), Q value = 0.49

Table S12048.  Gene #1131: 'CT47B1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
CT47B1 MUTATED 6 1 0
CT47B1 WILD-TYPE 176 132 72
'CT47B1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0213 (Fisher's exact test), Q value = 0.15

Table S12049.  Gene #1131: 'CT47B1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
CT47B1 MUTATED 2 2 4 0
CT47B1 WILD-TYPE 110 94 88 186

Figure S3179.  Get High-res Image Gene #1131: 'CT47B1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'CT47B1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0303 (Fisher's exact test), Q value = 0.18

Table S12050.  Gene #1131: 'CT47B1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
CT47B1 MUTATED 1 1 2 2 2 0 0
CT47B1 WILD-TYPE 59 49 47 38 61 125 99

Figure S3180.  Get High-res Image Gene #1131: 'CT47B1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CT47B1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0209 (Fisher's exact test), Q value = 0.15

Table S12051.  Gene #1131: 'CT47B1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
CT47B1 MUTATED 4 3 1 0
CT47B1 WILD-TYPE 126 75 67 196

Figure S3181.  Get High-res Image Gene #1131: 'CT47B1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'CT47B1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.238 (Fisher's exact test), Q value = 0.56

Table S12052.  Gene #1131: 'CT47B1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
CT47B1 MUTATED 1 4 0 1 1 0 1 0 0
CT47B1 WILD-TYPE 39 58 28 79 68 48 42 28 74
'CT47B1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S12053.  Gene #1131: 'CT47B1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
CT47B1 MUTATED 1 1 1 1
CT47B1 WILD-TYPE 32 30 26 18
'CT47B1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.217 (Fisher's exact test), Q value = 0.53

Table S12054.  Gene #1131: 'CT47B1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
CT47B1 MUTATED 3 1 0 0
CT47B1 WILD-TYPE 51 9 24 22
'ZNF619 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0717 (Fisher's exact test), Q value = 0.29

Table S12055.  Gene #1132: 'ZNF619 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ZNF619 MUTATED 2 0 0 2
ZNF619 WILD-TYPE 44 58 64 41
'ZNF619 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0609 (Fisher's exact test), Q value = 0.27

Table S12056.  Gene #1132: 'ZNF619 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ZNF619 MUTATED 3 1 0
ZNF619 WILD-TYPE 48 82 77
'ZNF619 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00022 (Fisher's exact test), Q value = 0.0088

Table S12057.  Gene #1132: 'ZNF619 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ZNF619 MUTATED 11 0 0 0
ZNF619 WILD-TYPE 167 183 101 20

Figure S3182.  Get High-res Image Gene #1132: 'ZNF619 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ZNF619 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.14 (Fisher's exact test), Q value = 0.42

Table S12058.  Gene #1132: 'ZNF619 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ZNF619 MUTATED 4 0 2
ZNF619 WILD-TYPE 83 80 98
'ZNF619 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.216 (Fisher's exact test), Q value = 0.53

Table S12059.  Gene #1132: 'ZNF619 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ZNF619 MUTATED 0 4 5
ZNF619 WILD-TYPE 89 156 133
'ZNF619 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.293 (Fisher's exact test), Q value = 0.62

Table S12060.  Gene #1132: 'ZNF619 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ZNF619 MUTATED 4 5 0
ZNF619 WILD-TYPE 178 128 72
'ZNF619 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.223 (Fisher's exact test), Q value = 0.54

Table S12061.  Gene #1132: 'ZNF619 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ZNF619 MUTATED 0 2 3 6
ZNF619 WILD-TYPE 112 94 89 180
'ZNF619 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00128 (Fisher's exact test), Q value = 0.029

Table S12062.  Gene #1132: 'ZNF619 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ZNF619 MUTATED 0 1 4 0 0 0 6
ZNF619 WILD-TYPE 60 49 45 40 63 125 93

Figure S3183.  Get High-res Image Gene #1132: 'ZNF619 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ZNF619 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.23 (Fisher's exact test), Q value = 0.55

Table S12063.  Gene #1132: 'ZNF619 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ZNF619 MUTATED 1 2 0 7
ZNF619 WILD-TYPE 129 76 68 189
'ZNF619 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.187 (Fisher's exact test), Q value = 0.49

Table S12064.  Gene #1132: 'ZNF619 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ZNF619 MUTATED 0 2 1 0 4 0 0 1 2
ZNF619 WILD-TYPE 40 60 27 80 65 48 43 27 72
'LIX1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.016 (Fisher's exact test), Q value = 0.13

Table S12065.  Gene #1133: 'LIX1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
LIX1 MUTATED 1 0 0 3
LIX1 WILD-TYPE 45 58 64 40

Figure S3184.  Get High-res Image Gene #1133: 'LIX1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'LIX1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.553 (Fisher's exact test), Q value = 0.87

Table S12066.  Gene #1133: 'LIX1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
LIX1 MUTATED 2 1 1
LIX1 WILD-TYPE 49 82 76
'LIX1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00249 (Fisher's exact test), Q value = 0.043

Table S12067.  Gene #1133: 'LIX1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
LIX1 MUTATED 8 1 0 2
LIX1 WILD-TYPE 170 182 101 18

Figure S3185.  Get High-res Image Gene #1133: 'LIX1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'LIX1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.713 (Fisher's exact test), Q value = 0.98

Table S12068.  Gene #1133: 'LIX1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
LIX1 MUTATED 3 1 3
LIX1 WILD-TYPE 84 79 97
'LIX1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.716 (Fisher's exact test), Q value = 0.99

Table S12069.  Gene #1133: 'LIX1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
LIX1 MUTATED 1 5 4
LIX1 WILD-TYPE 88 155 134
'LIX1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.841 (Fisher's exact test), Q value = 1

Table S12070.  Gene #1133: 'LIX1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
LIX1 MUTATED 4 4 2
LIX1 WILD-TYPE 178 129 70
'LIX1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.506 (Fisher's exact test), Q value = 0.83

Table S12071.  Gene #1133: 'LIX1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
LIX1 MUTATED 1 4 2 4
LIX1 WILD-TYPE 111 92 90 182
'LIX1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0342 (Fisher's exact test), Q value = 0.19

Table S12072.  Gene #1133: 'LIX1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
LIX1 MUTATED 1 2 3 2 0 0 3
LIX1 WILD-TYPE 59 48 46 38 63 125 96

Figure S3186.  Get High-res Image Gene #1133: 'LIX1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'LIX1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.635 (Fisher's exact test), Q value = 0.93

Table S12073.  Gene #1133: 'LIX1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
LIX1 MUTATED 4 2 0 5
LIX1 WILD-TYPE 126 76 68 191
'LIX1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0411 (Fisher's exact test), Q value = 0.21

Table S12074.  Gene #1133: 'LIX1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
LIX1 MUTATED 1 2 2 0 4 0 2 0 0
LIX1 WILD-TYPE 39 60 26 80 65 48 41 28 74

Figure S3187.  Get High-res Image Gene #1133: 'LIX1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'BCLAF1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0842 (Fisher's exact test), Q value = 0.31

Table S12075.  Gene #1134: 'BCLAF1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
BCLAF1 MUTATED 2 0 2 4
BCLAF1 WILD-TYPE 44 58 62 39
'BCLAF1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.898 (Fisher's exact test), Q value = 1

Table S12076.  Gene #1134: 'BCLAF1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
BCLAF1 MUTATED 2 4 2
BCLAF1 WILD-TYPE 49 79 75
'BCLAF1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.146 (Fisher's exact test), Q value = 0.43

Table S12077.  Gene #1134: 'BCLAF1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
BCLAF1 MUTATED 13 6 2 1
BCLAF1 WILD-TYPE 165 177 99 19
'BCLAF1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.426 (Fisher's exact test), Q value = 0.75

Table S12078.  Gene #1134: 'BCLAF1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
BCLAF1 MUTATED 7 3 4
BCLAF1 WILD-TYPE 80 77 96
'BCLAF1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.447 (Fisher's exact test), Q value = 0.77

Table S12079.  Gene #1134: 'BCLAF1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
BCLAF1 MUTATED 2 10 7
BCLAF1 WILD-TYPE 87 150 131
'BCLAF1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.61 (Fisher's exact test), Q value = 0.91

Table S12080.  Gene #1134: 'BCLAF1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
BCLAF1 MUTATED 7 8 4
BCLAF1 WILD-TYPE 175 125 68
'BCLAF1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.62 (Fisher's exact test), Q value = 0.92

Table S12081.  Gene #1134: 'BCLAF1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
BCLAF1 MUTATED 3 4 6 8
BCLAF1 WILD-TYPE 109 92 86 178
'BCLAF1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.418 (Fisher's exact test), Q value = 0.75

Table S12082.  Gene #1134: 'BCLAF1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
BCLAF1 MUTATED 1 2 4 3 4 3 4
BCLAF1 WILD-TYPE 59 48 45 37 59 122 95
'BCLAF1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.152 (Fisher's exact test), Q value = 0.44

Table S12083.  Gene #1134: 'BCLAF1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
BCLAF1 MUTATED 3 6 5 7
BCLAF1 WILD-TYPE 127 72 63 189
'BCLAF1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.766 (Fisher's exact test), Q value = 1

Table S12084.  Gene #1134: 'BCLAF1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
BCLAF1 MUTATED 3 3 1 2 3 1 3 0 5
BCLAF1 WILD-TYPE 37 59 27 78 66 47 40 28 69
'BCLAF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.821 (Fisher's exact test), Q value = 1

Table S12085.  Gene #1134: 'BCLAF1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
BCLAF1 MUTATED 3 2 1 2
BCLAF1 WILD-TYPE 30 29 26 17
'BCLAF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.543 (Fisher's exact test), Q value = 0.86

Table S12086.  Gene #1134: 'BCLAF1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
BCLAF1 MUTATED 3 0 2 3
BCLAF1 WILD-TYPE 51 10 22 19
'OR2Y1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.332 (Fisher's exact test), Q value = 0.66

Table S12087.  Gene #1135: 'OR2Y1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
OR2Y1 MUTATED 5 1 2 0
OR2Y1 WILD-TYPE 173 182 99 20
'OR2Y1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0513 (Fisher's exact test), Q value = 0.24

Table S12088.  Gene #1135: 'OR2Y1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
OR2Y1 MUTATED 0 1 5
OR2Y1 WILD-TYPE 87 79 95
'OR2Y1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.383 (Fisher's exact test), Q value = 0.71

Table S12089.  Gene #1135: 'OR2Y1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
OR2Y1 MUTATED 1 2 5
OR2Y1 WILD-TYPE 88 158 133
'OR2Y1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.895 (Fisher's exact test), Q value = 1

Table S12090.  Gene #1135: 'OR2Y1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
OR2Y1 MUTATED 5 2 1
OR2Y1 WILD-TYPE 177 131 71
'OR2Y1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.258 (Fisher's exact test), Q value = 0.58

Table S12091.  Gene #1135: 'OR2Y1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
OR2Y1 MUTATED 1 4 1 2
OR2Y1 WILD-TYPE 111 92 91 184
'OR2Y1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00474 (Fisher's exact test), Q value = 0.062

Table S12092.  Gene #1135: 'OR2Y1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
OR2Y1 MUTATED 1 0 5 0 0 1 1
OR2Y1 WILD-TYPE 59 50 44 40 63 124 98

Figure S3188.  Get High-res Image Gene #1135: 'OR2Y1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'OR2Y1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.826 (Fisher's exact test), Q value = 1

Table S12093.  Gene #1135: 'OR2Y1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
OR2Y1 MUTATED 3 1 0 3
OR2Y1 WILD-TYPE 127 77 68 193
'OR2Y1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.669 (Fisher's exact test), Q value = 0.95

Table S12094.  Gene #1135: 'OR2Y1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
OR2Y1 MUTATED 0 1 0 1 3 1 1 0 0
OR2Y1 WILD-TYPE 40 61 28 79 66 47 42 28 74
'KTN1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0705 (Fisher's exact test), Q value = 0.29

Table S12095.  Gene #1136: 'KTN1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
KTN1 MUTATED 3 0 1 3
KTN1 WILD-TYPE 43 58 63 40
'KTN1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00515 (Fisher's exact test), Q value = 0.065

Table S12096.  Gene #1136: 'KTN1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
KTN1 MUTATED 5 0 2
KTN1 WILD-TYPE 46 83 75

Figure S3189.  Get High-res Image Gene #1136: 'KTN1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'KTN1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00017 (Fisher's exact test), Q value = 0.0075

Table S12097.  Gene #1136: 'KTN1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
KTN1 MUTATED 17 3 0 0
KTN1 WILD-TYPE 161 180 101 20

Figure S3190.  Get High-res Image Gene #1136: 'KTN1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'KTN1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.755 (Fisher's exact test), Q value = 1

Table S12098.  Gene #1136: 'KTN1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
KTN1 MUTATED 3 3 6
KTN1 WILD-TYPE 84 77 94
'KTN1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.316 (Fisher's exact test), Q value = 0.64

Table S12099.  Gene #1136: 'KTN1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
KTN1 MUTATED 2 7 9
KTN1 WILD-TYPE 87 153 129
'KTN1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.455 (Fisher's exact test), Q value = 0.78

Table S12100.  Gene #1136: 'KTN1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
KTN1 MUTATED 6 8 4
KTN1 WILD-TYPE 176 125 68
'KTN1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.604 (Fisher's exact test), Q value = 0.91

Table S12101.  Gene #1136: 'KTN1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
KTN1 MUTATED 3 6 4 7
KTN1 WILD-TYPE 109 90 88 179
'KTN1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00035 (Fisher's exact test), Q value = 0.012

Table S12102.  Gene #1136: 'KTN1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
KTN1 MUTATED 1 3 7 0 2 0 7
KTN1 WILD-TYPE 59 47 42 40 61 125 92

Figure S3191.  Get High-res Image Gene #1136: 'KTN1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'KTN1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.221 (Fisher's exact test), Q value = 0.53

Table S12103.  Gene #1136: 'KTN1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
KTN1 MUTATED 7 4 0 7
KTN1 WILD-TYPE 123 74 68 189
'KTN1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00189 (Fisher's exact test), Q value = 0.036

Table S12104.  Gene #1136: 'KTN1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
KTN1 MUTATED 1 5 2 0 8 0 0 0 2
KTN1 WILD-TYPE 39 57 26 80 61 48 43 28 72

Figure S3192.  Get High-res Image Gene #1136: 'KTN1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'CBLL1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.149 (Fisher's exact test), Q value = 0.43

Table S12105.  Gene #1137: 'CBLL1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
CBLL1 MUTATED 4 0 2 0
CBLL1 WILD-TYPE 174 183 99 20
'CBLL1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.196 (Fisher's exact test), Q value = 0.5

Table S12106.  Gene #1137: 'CBLL1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
CBLL1 MUTATED 1 0 4
CBLL1 WILD-TYPE 86 80 96
'CBLL1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.848 (Fisher's exact test), Q value = 1

Table S12107.  Gene #1137: 'CBLL1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
CBLL1 MUTATED 1 3 1
CBLL1 WILD-TYPE 88 157 137
'CBLL1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.85 (Fisher's exact test), Q value = 1

Table S12108.  Gene #1137: 'CBLL1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
CBLL1 MUTATED 3 1 1
CBLL1 WILD-TYPE 179 132 71
'CBLL1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.104 (Fisher's exact test), Q value = 0.36

Table S12109.  Gene #1137: 'CBLL1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
CBLL1 MUTATED 0 3 2 1
CBLL1 WILD-TYPE 112 93 90 185
'CBLL1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0207 (Fisher's exact test), Q value = 0.15

Table S12110.  Gene #1137: 'CBLL1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
CBLL1 MUTATED 1 1 3 0 1 0 0
CBLL1 WILD-TYPE 59 49 46 40 62 125 99

Figure S3193.  Get High-res Image Gene #1137: 'CBLL1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CBLL1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.183 (Fisher's exact test), Q value = 0.48

Table S12111.  Gene #1137: 'CBLL1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
CBLL1 MUTATED 4 1 0 1
CBLL1 WILD-TYPE 126 77 68 195
'CBLL1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.159 (Fisher's exact test), Q value = 0.45

Table S12112.  Gene #1137: 'CBLL1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
CBLL1 MUTATED 1 1 1 0 3 0 0 0 0
CBLL1 WILD-TYPE 39 61 27 80 66 48 43 28 74
'CTSZ MUTATION STATUS' versus 'CN_CNMF'

P value = 0.484 (Fisher's exact test), Q value = 0.81

Table S12113.  Gene #1138: 'CTSZ MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
CTSZ MUTATED 2 4 0 0
CTSZ WILD-TYPE 176 179 101 20
'CTSZ MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0711 (Fisher's exact test), Q value = 0.29

Table S12114.  Gene #1138: 'CTSZ MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
CTSZ MUTATED 1 3 0
CTSZ WILD-TYPE 86 77 100
'CTSZ MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.768 (Fisher's exact test), Q value = 1

Table S12115.  Gene #1138: 'CTSZ MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
CTSZ MUTATED 2 2 2
CTSZ WILD-TYPE 87 158 136
'CTSZ MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.113 (Fisher's exact test), Q value = 0.37

Table S12116.  Gene #1138: 'CTSZ MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
CTSZ MUTATED 4 0 2
CTSZ WILD-TYPE 178 133 70
'CTSZ MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.942 (Fisher's exact test), Q value = 1

Table S12117.  Gene #1138: 'CTSZ MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
CTSZ MUTATED 2 1 1 2
CTSZ WILD-TYPE 110 95 91 184
'CTSZ MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.693 (Fisher's exact test), Q value = 0.97

Table S12118.  Gene #1138: 'CTSZ MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
CTSZ MUTATED 2 0 1 0 1 1 1
CTSZ WILD-TYPE 58 50 48 40 62 124 98
'CTSZ MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.132 (Fisher's exact test), Q value = 0.4

Table S12119.  Gene #1138: 'CTSZ MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
CTSZ MUTATED 1 3 1 1
CTSZ WILD-TYPE 129 75 67 195
'CTSZ MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.563 (Fisher's exact test), Q value = 0.87

Table S12120.  Gene #1138: 'CTSZ MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
CTSZ MUTATED 0 2 0 0 1 0 1 1 1
CTSZ WILD-TYPE 40 60 28 80 68 48 42 27 73
'GLDN MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.438 (Fisher's exact test), Q value = 0.76

Table S12121.  Gene #1139: 'GLDN MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
GLDN MUTATED 2 0 1 1
GLDN WILD-TYPE 44 58 63 42
'GLDN MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.834 (Fisher's exact test), Q value = 1

Table S12122.  Gene #1139: 'GLDN MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
GLDN MUTATED 1 1 2
GLDN WILD-TYPE 50 82 75
'GLDN MUTATION STATUS' versus 'CN_CNMF'

P value = 0.126 (Fisher's exact test), Q value = 0.39

Table S12123.  Gene #1139: 'GLDN MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
GLDN MUTATED 7 1 1 0
GLDN WILD-TYPE 171 182 100 20
'GLDN MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.527 (Fisher's exact test), Q value = 0.85

Table S12124.  Gene #1139: 'GLDN MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
GLDN MUTATED 3 1 1
GLDN WILD-TYPE 84 79 99
'GLDN MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.33 (Fisher's exact test), Q value = 0.66

Table S12125.  Gene #1139: 'GLDN MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
GLDN MUTATED 1 1 4
GLDN WILD-TYPE 88 159 134
'GLDN MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.336 (Fisher's exact test), Q value = 0.66

Table S12126.  Gene #1139: 'GLDN MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
GLDN MUTATED 5 1 0
GLDN WILD-TYPE 177 132 72
'GLDN MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.904 (Fisher's exact test), Q value = 1

Table S12127.  Gene #1139: 'GLDN MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
GLDN MUTATED 1 2 2 4
GLDN WILD-TYPE 111 94 90 182
'GLDN MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.4 (Fisher's exact test), Q value = 0.73

Table S12128.  Gene #1139: 'GLDN MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
GLDN MUTATED 1 1 3 0 0 2 2
GLDN WILD-TYPE 59 49 46 40 63 123 97
'GLDN MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.928 (Fisher's exact test), Q value = 1

Table S12129.  Gene #1139: 'GLDN MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
GLDN MUTATED 2 1 1 5
GLDN WILD-TYPE 128 77 67 191
'GLDN MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.753 (Fisher's exact test), Q value = 1

Table S12130.  Gene #1139: 'GLDN MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
GLDN MUTATED 1 3 1 1 1 0 1 0 1
GLDN WILD-TYPE 39 59 27 79 68 48 42 28 73
'RARRES3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.323 (Fisher's exact test), Q value = 0.65

Table S12131.  Gene #1140: 'RARRES3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
RARRES3 MUTATED 2 1 1 1
RARRES3 WILD-TYPE 176 182 100 19
'RARRES3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.835 (Fisher's exact test), Q value = 1

Table S12132.  Gene #1140: 'RARRES3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
RARRES3 MUTATED 2 1 1
RARRES3 WILD-TYPE 85 79 99
'RARRES3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.542 (Fisher's exact test), Q value = 0.86

Table S12133.  Gene #1140: 'RARRES3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
RARRES3 MUTATED 1 1 3
RARRES3 WILD-TYPE 88 159 135
'RARRES3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.854 (Fisher's exact test), Q value = 1

Table S12134.  Gene #1140: 'RARRES3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
RARRES3 MUTATED 3 1 1
RARRES3 WILD-TYPE 179 132 71
'RARRES3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.567 (Fisher's exact test), Q value = 0.87

Table S12135.  Gene #1140: 'RARRES3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
RARRES3 MUTATED 1 1 2 1
RARRES3 WILD-TYPE 111 95 90 185
'RARRES3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0854 (Fisher's exact test), Q value = 0.32

Table S12136.  Gene #1140: 'RARRES3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
RARRES3 MUTATED 0 0 2 0 2 0 1
RARRES3 WILD-TYPE 60 50 47 40 61 125 98
'RARRES3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.407 (Fisher's exact test), Q value = 0.73

Table S12137.  Gene #1140: 'RARRES3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
RARRES3 MUTATED 3 1 0 1
RARRES3 WILD-TYPE 127 77 68 195
'RARRES3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.801 (Fisher's exact test), Q value = 1

Table S12138.  Gene #1140: 'RARRES3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
RARRES3 MUTATED 1 1 0 1 2 0 0 0 0
RARRES3 WILD-TYPE 39 61 28 79 67 48 43 28 74
'CBLN3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0225 (Fisher's exact test), Q value = 0.15

Table S12139.  Gene #1141: 'CBLN3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
CBLN3 MUTATED 6 0 0 0
CBLN3 WILD-TYPE 172 183 101 20

Figure S3194.  Get High-res Image Gene #1141: 'CBLN3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'CBLN3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.292 (Fisher's exact test), Q value = 0.62

Table S12140.  Gene #1141: 'CBLN3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
CBLN3 MUTATED 3 0 3
CBLN3 WILD-TYPE 84 80 97
'CBLN3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0298 (Fisher's exact test), Q value = 0.18

Table S12141.  Gene #1141: 'CBLN3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
CBLN3 MUTATED 1 0 5
CBLN3 WILD-TYPE 88 160 133

Figure S3195.  Get High-res Image Gene #1141: 'CBLN3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'CBLN3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S12142.  Gene #1141: 'CBLN3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
CBLN3 MUTATED 3 2 1
CBLN3 WILD-TYPE 179 131 71
'CBLN3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00546 (Fisher's exact test), Q value = 0.067

Table S12143.  Gene #1141: 'CBLN3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
CBLN3 MUTATED 0 4 2 0
CBLN3 WILD-TYPE 112 92 90 186

Figure S3196.  Get High-res Image Gene #1141: 'CBLN3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'CBLN3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0209 (Fisher's exact test), Q value = 0.15

Table S12144.  Gene #1141: 'CBLN3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
CBLN3 MUTATED 1 0 2 2 1 0 0
CBLN3 WILD-TYPE 59 50 47 38 62 125 99

Figure S3197.  Get High-res Image Gene #1141: 'CBLN3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CBLN3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0144 (Fisher's exact test), Q value = 0.12

Table S12145.  Gene #1141: 'CBLN3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
CBLN3 MUTATED 5 1 0 0
CBLN3 WILD-TYPE 125 77 68 196

Figure S3198.  Get High-res Image Gene #1141: 'CBLN3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'CBLN3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0695 (Fisher's exact test), Q value = 0.28

Table S12146.  Gene #1141: 'CBLN3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
CBLN3 MUTATED 2 3 0 0 1 0 0 0 0
CBLN3 WILD-TYPE 38 59 28 80 68 48 43 28 74
'LRRN3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0186 (Fisher's exact test), Q value = 0.14

Table S12147.  Gene #1142: 'LRRN3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
LRRN3 MUTATED 6 1 1 1
LRRN3 WILD-TYPE 40 57 63 42

Figure S3199.  Get High-res Image Gene #1142: 'LRRN3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'LRRN3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00108 (Fisher's exact test), Q value = 0.026

Table S12148.  Gene #1142: 'LRRN3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
LRRN3 MUTATED 7 1 1
LRRN3 WILD-TYPE 44 82 76

Figure S3200.  Get High-res Image Gene #1142: 'LRRN3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'LRRN3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0193 (Fisher's exact test), Q value = 0.14

Table S12149.  Gene #1142: 'LRRN3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
LRRN3 MUTATED 16 5 2 0
LRRN3 WILD-TYPE 162 178 99 20

Figure S3201.  Get High-res Image Gene #1142: 'LRRN3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'LRRN3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.827 (Fisher's exact test), Q value = 1

Table S12150.  Gene #1142: 'LRRN3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
LRRN3 MUTATED 4 3 6
LRRN3 WILD-TYPE 83 77 94
'LRRN3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.783 (Fisher's exact test), Q value = 1

Table S12151.  Gene #1142: 'LRRN3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
LRRN3 MUTATED 6 8 8
LRRN3 WILD-TYPE 83 152 130
'LRRN3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.741 (Fisher's exact test), Q value = 1

Table S12152.  Gene #1142: 'LRRN3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
LRRN3 MUTATED 9 8 5
LRRN3 WILD-TYPE 173 125 67
'LRRN3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.344 (Fisher's exact test), Q value = 0.67

Table S12153.  Gene #1142: 'LRRN3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
LRRN3 MUTATED 2 5 6 10
LRRN3 WILD-TYPE 110 91 86 176
'LRRN3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0239 (Fisher's exact test), Q value = 0.16

Table S12154.  Gene #1142: 'LRRN3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
LRRN3 MUTATED 1 2 6 1 2 2 9
LRRN3 WILD-TYPE 59 48 43 39 61 123 90

Figure S3202.  Get High-res Image Gene #1142: 'LRRN3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'LRRN3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.49 (Fisher's exact test), Q value = 0.82

Table S12155.  Gene #1142: 'LRRN3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
LRRN3 MUTATED 6 1 3 11
LRRN3 WILD-TYPE 124 77 65 185
'LRRN3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.329 (Fisher's exact test), Q value = 0.66

Table S12156.  Gene #1142: 'LRRN3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
LRRN3 MUTATED 1 1 1 3 5 0 3 3 4
LRRN3 WILD-TYPE 39 61 27 77 64 48 40 25 70
'LRRN3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.136 (Fisher's exact test), Q value = 0.41

Table S12157.  Gene #1142: 'LRRN3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
LRRN3 MUTATED 1 0 0 2
LRRN3 WILD-TYPE 32 31 27 17
'LRRN3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.841 (Fisher's exact test), Q value = 1

Table S12158.  Gene #1142: 'LRRN3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
LRRN3 MUTATED 2 0 0 1
LRRN3 WILD-TYPE 52 10 24 21
'WDR5B MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.484 (Fisher's exact test), Q value = 0.81

Table S12159.  Gene #1143: 'WDR5B MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
WDR5B MUTATED 1 2 0 1
WDR5B WILD-TYPE 45 56 64 42
'WDR5B MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.291 (Fisher's exact test), Q value = 0.62

Table S12160.  Gene #1143: 'WDR5B MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
WDR5B MUTATED 1 3 0
WDR5B WILD-TYPE 50 80 77
'WDR5B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.13 (Fisher's exact test), Q value = 0.4

Table S12161.  Gene #1143: 'WDR5B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
WDR5B MUTATED 8 5 0 0
WDR5B WILD-TYPE 170 178 101 20
'WDR5B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.159 (Fisher's exact test), Q value = 0.45

Table S12162.  Gene #1143: 'WDR5B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
WDR5B MUTATED 5 3 1
WDR5B WILD-TYPE 82 77 99
'WDR5B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1e-04 (Fisher's exact test), Q value = 0.0052

Table S12163.  Gene #1143: 'WDR5B MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
WDR5B MUTATED 0 1 12
WDR5B WILD-TYPE 89 159 126

Figure S3203.  Get High-res Image Gene #1143: 'WDR5B MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'WDR5B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0186 (Fisher's exact test), Q value = 0.14

Table S12164.  Gene #1143: 'WDR5B MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
WDR5B MUTATED 11 2 0
WDR5B WILD-TYPE 171 131 72

Figure S3204.  Get High-res Image Gene #1143: 'WDR5B MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'WDR5B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.118 (Fisher's exact test), Q value = 0.38

Table S12165.  Gene #1143: 'WDR5B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
WDR5B MUTATED 5 0 4 4
WDR5B WILD-TYPE 107 96 88 182
'WDR5B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.305 (Fisher's exact test), Q value = 0.63

Table S12166.  Gene #1143: 'WDR5B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
WDR5B MUTATED 2 2 1 0 4 1 3
WDR5B WILD-TYPE 58 48 48 40 59 124 96
'WDR5B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0444 (Fisher's exact test), Q value = 0.22

Table S12167.  Gene #1143: 'WDR5B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
WDR5B MUTATED 2 4 4 2
WDR5B WILD-TYPE 128 74 64 194

Figure S3205.  Get High-res Image Gene #1143: 'WDR5B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'WDR5B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.586 (Fisher's exact test), Q value = 0.89

Table S12168.  Gene #1143: 'WDR5B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
WDR5B MUTATED 0 4 1 2 1 1 2 0 1
WDR5B WILD-TYPE 40 58 27 78 68 47 41 28 73
'WDR5B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.931 (Fisher's exact test), Q value = 1

Table S12169.  Gene #1143: 'WDR5B MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
WDR5B MUTATED 1 2 1 1
WDR5B WILD-TYPE 32 29 26 18
'WDR5B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.695 (Fisher's exact test), Q value = 0.97

Table S12170.  Gene #1143: 'WDR5B MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
WDR5B MUTATED 2 1 1 1
WDR5B WILD-TYPE 52 9 23 21
'CLDND1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.489 (Fisher's exact test), Q value = 0.82

Table S12171.  Gene #1144: 'CLDND1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
CLDND1 MUTATED 6 2 2 0
CLDND1 WILD-TYPE 172 181 99 20
'CLDND1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.113 (Fisher's exact test), Q value = 0.37

Table S12172.  Gene #1144: 'CLDND1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
CLDND1 MUTATED 3 0 5
CLDND1 WILD-TYPE 84 80 95
'CLDND1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.511 (Fisher's exact test), Q value = 0.83

Table S12173.  Gene #1144: 'CLDND1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
CLDND1 MUTATED 1 3 5
CLDND1 WILD-TYPE 88 157 133
'CLDND1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S12174.  Gene #1144: 'CLDND1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
CLDND1 MUTATED 5 3 1
CLDND1 WILD-TYPE 177 130 71
'CLDND1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0898 (Fisher's exact test), Q value = 0.33

Table S12175.  Gene #1144: 'CLDND1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
CLDND1 MUTATED 0 3 4 3
CLDND1 WILD-TYPE 112 93 88 183
'CLDND1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.248 (Fisher's exact test), Q value = 0.57

Table S12176.  Gene #1144: 'CLDND1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
CLDND1 MUTATED 2 1 2 1 2 0 2
CLDND1 WILD-TYPE 58 49 47 39 61 125 97
'CLDND1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.376 (Fisher's exact test), Q value = 0.71

Table S12177.  Gene #1144: 'CLDND1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
CLDND1 MUTATED 5 1 0 4
CLDND1 WILD-TYPE 125 77 68 192
'CLDND1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.765 (Fisher's exact test), Q value = 1

Table S12178.  Gene #1144: 'CLDND1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
CLDND1 MUTATED 1 1 0 2 4 1 0 0 1
CLDND1 WILD-TYPE 39 61 28 78 65 47 43 28 73
'MERTK MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.221 (Fisher's exact test), Q value = 0.53

Table S12179.  Gene #1145: 'MERTK MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
MERTK MUTATED 2 1 0 2
MERTK WILD-TYPE 44 57 64 41
'MERTK MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.74 (Fisher's exact test), Q value = 1

Table S12180.  Gene #1145: 'MERTK MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
MERTK MUTATED 2 2 1
MERTK WILD-TYPE 49 81 76
'MERTK MUTATION STATUS' versus 'CN_CNMF'

P value = 0.158 (Fisher's exact test), Q value = 0.45

Table S12181.  Gene #1145: 'MERTK MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
MERTK MUTATED 10 4 4 2
MERTK WILD-TYPE 168 179 97 18
'MERTK MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.174 (Fisher's exact test), Q value = 0.47

Table S12182.  Gene #1145: 'MERTK MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
MERTK MUTATED 8 2 5
MERTK WILD-TYPE 79 78 95
'MERTK MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.117 (Fisher's exact test), Q value = 0.38

Table S12183.  Gene #1145: 'MERTK MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
MERTK MUTATED 2 6 11
MERTK WILD-TYPE 87 154 127
'MERTK MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.232 (Fisher's exact test), Q value = 0.55

Table S12184.  Gene #1145: 'MERTK MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
MERTK MUTATED 12 6 1
MERTK WILD-TYPE 170 127 71
'MERTK MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.177 (Fisher's exact test), Q value = 0.48

Table S12185.  Gene #1145: 'MERTK MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
MERTK MUTATED 2 5 7 6
MERTK WILD-TYPE 110 91 85 180
'MERTK MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.079 (Fisher's exact test), Q value = 0.3

Table S12186.  Gene #1145: 'MERTK MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
MERTK MUTATED 2 1 6 2 4 2 3
MERTK WILD-TYPE 58 49 43 38 59 123 96
'MERTK MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.78 (Fisher's exact test), Q value = 1

Table S12187.  Gene #1145: 'MERTK MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
MERTK MUTATED 7 2 3 7
MERTK WILD-TYPE 123 76 65 189
'MERTK MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0169 (Fisher's exact test), Q value = 0.13

Table S12188.  Gene #1145: 'MERTK MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
MERTK MUTATED 3 2 0 0 6 0 4 2 2
MERTK WILD-TYPE 37 60 28 80 63 48 39 26 72

Figure S3206.  Get High-res Image Gene #1145: 'MERTK MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'MERTK MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0941 (Fisher's exact test), Q value = 0.34

Table S12189.  Gene #1145: 'MERTK MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
MERTK MUTATED 2 0 1 3
MERTK WILD-TYPE 31 31 26 16
'MERTK MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.852 (Fisher's exact test), Q value = 1

Table S12190.  Gene #1145: 'MERTK MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
MERTK MUTATED 3 0 1 2
MERTK WILD-TYPE 51 10 23 20
'PRMT8 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.613 (Fisher's exact test), Q value = 0.91

Table S12191.  Gene #1146: 'PRMT8 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
PRMT8 MUTATED 2 2 1 0
PRMT8 WILD-TYPE 44 56 63 43
'PRMT8 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.639 (Fisher's exact test), Q value = 0.93

Table S12192.  Gene #1146: 'PRMT8 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
PRMT8 MUTATED 2 1 2
PRMT8 WILD-TYPE 49 82 75
'PRMT8 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.105 (Fisher's exact test), Q value = 0.36

Table S12193.  Gene #1146: 'PRMT8 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
PRMT8 MUTATED 9 3 1 1
PRMT8 WILD-TYPE 169 180 100 19
'PRMT8 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0772 (Fisher's exact test), Q value = 0.3

Table S12194.  Gene #1146: 'PRMT8 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
PRMT8 MUTATED 3 0 6
PRMT8 WILD-TYPE 84 80 94
'PRMT8 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.601 (Fisher's exact test), Q value = 0.9

Table S12195.  Gene #1146: 'PRMT8 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
PRMT8 MUTATED 1 4 5
PRMT8 WILD-TYPE 88 156 133
'PRMT8 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.84 (Fisher's exact test), Q value = 1

Table S12196.  Gene #1146: 'PRMT8 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
PRMT8 MUTATED 4 4 2
PRMT8 WILD-TYPE 178 129 70
'PRMT8 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.014 (Fisher's exact test), Q value = 0.12

Table S12197.  Gene #1146: 'PRMT8 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
PRMT8 MUTATED 0 7 2 5
PRMT8 WILD-TYPE 112 89 90 181

Figure S3207.  Get High-res Image Gene #1146: 'PRMT8 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'PRMT8 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0557 (Fisher's exact test), Q value = 0.26

Table S12198.  Gene #1146: 'PRMT8 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
PRMT8 MUTATED 0 3 4 1 0 2 4
PRMT8 WILD-TYPE 60 47 45 39 63 123 95
'PRMT8 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.684 (Fisher's exact test), Q value = 0.96

Table S12199.  Gene #1146: 'PRMT8 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
PRMT8 MUTATED 4 1 1 8
PRMT8 WILD-TYPE 126 77 67 188
'PRMT8 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0921 (Fisher's exact test), Q value = 0.33

Table S12200.  Gene #1146: 'PRMT8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
PRMT8 MUTATED 1 1 0 1 7 0 1 0 3
PRMT8 WILD-TYPE 39 61 28 79 62 48 42 28 71
'PRMT8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.593 (Fisher's exact test), Q value = 0.9

Table S12201.  Gene #1146: 'PRMT8 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
PRMT8 MUTATED 2 0 1 1
PRMT8 WILD-TYPE 31 31 26 18
'PRMT8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.868 (Fisher's exact test), Q value = 1

Table S12202.  Gene #1146: 'PRMT8 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
PRMT8 MUTATED 3 0 1 0
PRMT8 WILD-TYPE 51 10 23 22
'TCEAL5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.79 (Fisher's exact test), Q value = 1

Table S12203.  Gene #1147: 'TCEAL5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
TCEAL5 MUTATED 3 1 1 0
TCEAL5 WILD-TYPE 175 182 100 20
'TCEAL5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.388 (Fisher's exact test), Q value = 0.72

Table S12204.  Gene #1147: 'TCEAL5 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
TCEAL5 MUTATED 1 0 3
TCEAL5 WILD-TYPE 86 80 97
'TCEAL5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S12205.  Gene #1147: 'TCEAL5 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
TCEAL5 MUTATED 1 2 2
TCEAL5 WILD-TYPE 88 158 136
'TCEAL5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.719 (Fisher's exact test), Q value = 0.99

Table S12206.  Gene #1147: 'TCEAL5 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
TCEAL5 MUTATED 3 2 0
TCEAL5 WILD-TYPE 179 131 72
'TCEAL5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0147 (Fisher's exact test), Q value = 0.12

Table S12207.  Gene #1147: 'TCEAL5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
TCEAL5 MUTATED 0 2 3 0
TCEAL5 WILD-TYPE 112 94 89 186

Figure S3208.  Get High-res Image Gene #1147: 'TCEAL5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'TCEAL5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0205 (Fisher's exact test), Q value = 0.14

Table S12208.  Gene #1147: 'TCEAL5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
TCEAL5 MUTATED 0 2 2 0 1 0 0
TCEAL5 WILD-TYPE 60 48 47 40 62 125 99

Figure S3209.  Get High-res Image Gene #1147: 'TCEAL5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'TCEAL5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.633 (Fisher's exact test), Q value = 0.93

Table S12209.  Gene #1147: 'TCEAL5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
TCEAL5 MUTATED 2 1 1 1
TCEAL5 WILD-TYPE 128 77 67 195
'TCEAL5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.272 (Fisher's exact test), Q value = 0.6

Table S12210.  Gene #1147: 'TCEAL5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
TCEAL5 MUTATED 0 2 0 0 1 0 1 1 0
TCEAL5 WILD-TYPE 40 60 28 80 68 48 42 27 74
'TCEAL5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0601 (Fisher's exact test), Q value = 0.27

Table S12211.  Gene #1147: 'TCEAL5 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
TCEAL5 MUTATED 0 0 1 2
TCEAL5 WILD-TYPE 33 31 26 17
'TCEAL5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.446 (Fisher's exact test), Q value = 0.77

Table S12212.  Gene #1147: 'TCEAL5 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
TCEAL5 MUTATED 1 0 2 0
TCEAL5 WILD-TYPE 53 10 22 22
'OR9Q2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.12 (Fisher's exact test), Q value = 0.39

Table S12213.  Gene #1148: 'OR9Q2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
OR9Q2 MUTATED 2 0 0 1
OR9Q2 WILD-TYPE 44 58 64 42
'OR9Q2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.462 (Fisher's exact test), Q value = 0.79

Table S12214.  Gene #1148: 'OR9Q2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
OR9Q2 MUTATED 1 2 0
OR9Q2 WILD-TYPE 50 81 77
'OR9Q2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.157 (Fisher's exact test), Q value = 0.45

Table S12215.  Gene #1148: 'OR9Q2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
OR9Q2 MUTATED 9 2 3 0
OR9Q2 WILD-TYPE 169 181 98 20
'OR9Q2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.212 (Fisher's exact test), Q value = 0.52

Table S12216.  Gene #1148: 'OR9Q2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
OR9Q2 MUTATED 1 4 6
OR9Q2 WILD-TYPE 86 76 94
'OR9Q2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.867 (Fisher's exact test), Q value = 1

Table S12217.  Gene #1148: 'OR9Q2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
OR9Q2 MUTATED 2 6 4
OR9Q2 WILD-TYPE 87 154 134
'OR9Q2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.743 (Fisher's exact test), Q value = 1

Table S12218.  Gene #1148: 'OR9Q2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
OR9Q2 MUTATED 6 5 1
OR9Q2 WILD-TYPE 176 128 71
'OR9Q2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.394 (Fisher's exact test), Q value = 0.72

Table S12219.  Gene #1148: 'OR9Q2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
OR9Q2 MUTATED 5 4 1 4
OR9Q2 WILD-TYPE 107 92 91 182
'OR9Q2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.282 (Fisher's exact test), Q value = 0.61

Table S12220.  Gene #1148: 'OR9Q2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
OR9Q2 MUTATED 3 2 3 0 2 1 3
OR9Q2 WILD-TYPE 57 48 46 40 61 124 96
'OR9Q2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.368 (Fisher's exact test), Q value = 0.7

Table S12221.  Gene #1148: 'OR9Q2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
OR9Q2 MUTATED 7 2 1 4
OR9Q2 WILD-TYPE 123 76 67 192
'OR9Q2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.377 (Fisher's exact test), Q value = 0.71

Table S12222.  Gene #1148: 'OR9Q2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
OR9Q2 MUTATED 1 2 3 3 2 0 2 0 1
OR9Q2 WILD-TYPE 39 60 25 77 67 48 41 28 73
'CTNNA3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.137 (Fisher's exact test), Q value = 0.41

Table S12223.  Gene #1149: 'CTNNA3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
CTNNA3 MUTATED 3 0 2 3
CTNNA3 WILD-TYPE 43 58 62 40
'CTNNA3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.048 (Fisher's exact test), Q value = 0.23

Table S12224.  Gene #1149: 'CTNNA3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
CTNNA3 MUTATED 5 1 2
CTNNA3 WILD-TYPE 46 82 75

Figure S3210.  Get High-res Image Gene #1149: 'CTNNA3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'CTNNA3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00104 (Fisher's exact test), Q value = 0.025

Table S12225.  Gene #1149: 'CTNNA3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
CTNNA3 MUTATED 19 3 3 1
CTNNA3 WILD-TYPE 159 180 98 19

Figure S3211.  Get High-res Image Gene #1149: 'CTNNA3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'CTNNA3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0117 (Fisher's exact test), Q value = 0.11

Table S12226.  Gene #1149: 'CTNNA3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
CTNNA3 MUTATED 4 1 12
CTNNA3 WILD-TYPE 83 79 88

Figure S3212.  Get High-res Image Gene #1149: 'CTNNA3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'CTNNA3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.408 (Fisher's exact test), Q value = 0.73

Table S12227.  Gene #1149: 'CTNNA3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
CTNNA3 MUTATED 5 6 10
CTNNA3 WILD-TYPE 84 154 128
'CTNNA3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.288 (Fisher's exact test), Q value = 0.62

Table S12228.  Gene #1149: 'CTNNA3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
CTNNA3 MUTATED 13 4 4
CTNNA3 WILD-TYPE 169 129 68
'CTNNA3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0623 (Fisher's exact test), Q value = 0.27

Table S12229.  Gene #1149: 'CTNNA3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
CTNNA3 MUTATED 2 8 8 8
CTNNA3 WILD-TYPE 110 88 84 178
'CTNNA3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S12230.  Gene #1149: 'CTNNA3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
CTNNA3 MUTATED 2 4 11 1 0 1 7
CTNNA3 WILD-TYPE 58 46 38 39 63 124 92

Figure S3213.  Get High-res Image Gene #1149: 'CTNNA3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CTNNA3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.337 (Fisher's exact test), Q value = 0.66

Table S12231.  Gene #1149: 'CTNNA3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
CTNNA3 MUTATED 10 4 1 10
CTNNA3 WILD-TYPE 120 74 67 186
'CTNNA3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.15 (Fisher's exact test), Q value = 0.43

Table S12232.  Gene #1149: 'CTNNA3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
CTNNA3 MUTATED 3 3 2 3 9 1 2 1 1
CTNNA3 WILD-TYPE 37 59 26 77 60 47 41 27 73
'CTNNA3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0244 (Fisher's exact test), Q value = 0.16

Table S12233.  Gene #1149: 'CTNNA3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
CTNNA3 MUTATED 2 0 0 3
CTNNA3 WILD-TYPE 31 31 27 16

Figure S3214.  Get High-res Image Gene #1149: 'CTNNA3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'CTNNA3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S12234.  Gene #1149: 'CTNNA3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
CTNNA3 MUTATED 3 0 1 1
CTNNA3 WILD-TYPE 51 10 23 21
'C14ORF39 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.066 (Fisher's exact test), Q value = 0.28

Table S12235.  Gene #1150: 'C14ORF39 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
C14ORF39 MUTATED 1 0 0 2
C14ORF39 WILD-TYPE 45 58 64 41
'C14ORF39 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S12236.  Gene #1150: 'C14ORF39 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
C14ORF39 MUTATED 1 1 1
C14ORF39 WILD-TYPE 50 82 76
'C14ORF39 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0325 (Fisher's exact test), Q value = 0.18

Table S12237.  Gene #1150: 'C14ORF39 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
C14ORF39 MUTATED 11 5 0 0
C14ORF39 WILD-TYPE 167 178 101 20

Figure S3215.  Get High-res Image Gene #1150: 'C14ORF39 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'C14ORF39 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.291 (Fisher's exact test), Q value = 0.62

Table S12238.  Gene #1150: 'C14ORF39 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
C14ORF39 MUTATED 7 2 5
C14ORF39 WILD-TYPE 80 78 95
'C14ORF39 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.291 (Fisher's exact test), Q value = 0.62

Table S12239.  Gene #1150: 'C14ORF39 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
C14ORF39 MUTATED 1 8 6
C14ORF39 WILD-TYPE 88 152 132
'C14ORF39 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.129 (Fisher's exact test), Q value = 0.4

Table S12240.  Gene #1150: 'C14ORF39 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
C14ORF39 MUTATED 5 9 1
C14ORF39 WILD-TYPE 177 124 71
'C14ORF39 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.317 (Fisher's exact test), Q value = 0.65

Table S12241.  Gene #1150: 'C14ORF39 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
C14ORF39 MUTATED 4 3 6 4
C14ORF39 WILD-TYPE 108 93 86 182
'C14ORF39 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00472 (Fisher's exact test), Q value = 0.062

Table S12242.  Gene #1150: 'C14ORF39 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
C14ORF39 MUTATED 6 2 4 1 1 0 3
C14ORF39 WILD-TYPE 54 48 45 39 62 125 96

Figure S3216.  Get High-res Image Gene #1150: 'C14ORF39 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'C14ORF39 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.675 (Fisher's exact test), Q value = 0.96

Table S12243.  Gene #1150: 'C14ORF39 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
C14ORF39 MUTATED 4 3 4 6
C14ORF39 WILD-TYPE 126 75 64 190
'C14ORF39 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.118 (Fisher's exact test), Q value = 0.38

Table S12244.  Gene #1150: 'C14ORF39 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
C14ORF39 MUTATED 0 4 1 2 3 0 5 0 2
C14ORF39 WILD-TYPE 40 58 27 78 66 48 38 28 72
'C14ORF39 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.167 (Fisher's exact test), Q value = 0.46

Table S12245.  Gene #1150: 'C14ORF39 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
C14ORF39 MUTATED 0 0 2 1
C14ORF39 WILD-TYPE 33 31 25 18
'C14ORF39 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.253 (Fisher's exact test), Q value = 0.58

Table S12246.  Gene #1150: 'C14ORF39 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
C14ORF39 MUTATED 1 0 0 2
C14ORF39 WILD-TYPE 53 10 24 20
'SAPS3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0605 (Fisher's exact test), Q value = 0.27

Table S12247.  Gene #1151: 'SAPS3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
SAPS3 MUTATED 3 1 0 3
SAPS3 WILD-TYPE 43 57 64 40
'SAPS3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.388 (Fisher's exact test), Q value = 0.71

Table S12248.  Gene #1151: 'SAPS3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
SAPS3 MUTATED 2 1 4
SAPS3 WILD-TYPE 49 82 73
'SAPS3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00029 (Fisher's exact test), Q value = 0.011

Table S12249.  Gene #1151: 'SAPS3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
SAPS3 MUTATED 13 1 0 1
SAPS3 WILD-TYPE 165 182 101 19

Figure S3217.  Get High-res Image Gene #1151: 'SAPS3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'SAPS3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S12250.  Gene #1151: 'SAPS3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
SAPS3 MUTATED 2 2 3
SAPS3 WILD-TYPE 85 78 97
'SAPS3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.073 (Fisher's exact test), Q value = 0.29

Table S12251.  Gene #1151: 'SAPS3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
SAPS3 MUTATED 0 4 7
SAPS3 WILD-TYPE 89 156 131
'SAPS3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.849 (Fisher's exact test), Q value = 1

Table S12252.  Gene #1151: 'SAPS3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
SAPS3 MUTATED 6 4 1
SAPS3 WILD-TYPE 176 129 71
'SAPS3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.541 (Fisher's exact test), Q value = 0.86

Table S12253.  Gene #1151: 'SAPS3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
SAPS3 MUTATED 3 1 4 7
SAPS3 WILD-TYPE 109 95 88 179
'SAPS3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.185 (Fisher's exact test), Q value = 0.49

Table S12254.  Gene #1151: 'SAPS3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
SAPS3 MUTATED 2 0 4 0 3 2 4
SAPS3 WILD-TYPE 58 50 45 40 60 123 95
'SAPS3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.64 (Fisher's exact test), Q value = 0.93

Table S12255.  Gene #1151: 'SAPS3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
SAPS3 MUTATED 3 4 2 5
SAPS3 WILD-TYPE 127 74 66 191
'SAPS3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.333 (Fisher's exact test), Q value = 0.66

Table S12256.  Gene #1151: 'SAPS3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
SAPS3 MUTATED 1 4 1 1 3 2 2 0 0
SAPS3 WILD-TYPE 39 58 27 79 66 46 41 28 74
'SAPS3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.356 (Fisher's exact test), Q value = 0.68

Table S12257.  Gene #1151: 'SAPS3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
SAPS3 MUTATED 1 1 0 2
SAPS3 WILD-TYPE 32 30 27 17
'SAPS3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.219 (Fisher's exact test), Q value = 0.53

Table S12258.  Gene #1151: 'SAPS3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
SAPS3 MUTATED 3 1 0 0
SAPS3 WILD-TYPE 51 9 24 22
'TRIM31 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.388 (Fisher's exact test), Q value = 0.72

Table S12259.  Gene #1152: 'TRIM31 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
TRIM31 MUTATED 4 1 0 0
TRIM31 WILD-TYPE 174 182 101 20
'TRIM31 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S12260.  Gene #1152: 'TRIM31 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
TRIM31 MUTATED 1 1 1
TRIM31 WILD-TYPE 86 79 99
'TRIM31 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S12261.  Gene #1152: 'TRIM31 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
TRIM31 MUTATED 1 2 2
TRIM31 WILD-TYPE 88 158 136
'TRIM31 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.718 (Fisher's exact test), Q value = 0.99

Table S12262.  Gene #1152: 'TRIM31 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
TRIM31 MUTATED 3 2 0
TRIM31 WILD-TYPE 179 131 72
'TRIM31 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.115 (Fisher's exact test), Q value = 0.38

Table S12263.  Gene #1152: 'TRIM31 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
TRIM31 MUTATED 0 3 1 1
TRIM31 WILD-TYPE 112 93 91 185
'TRIM31 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.38 (Fisher's exact test), Q value = 0.71

Table S12264.  Gene #1152: 'TRIM31 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
TRIM31 MUTATED 1 1 1 0 0 0 2
TRIM31 WILD-TYPE 59 49 48 40 63 125 97
'TRIM31 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.685 (Fisher's exact test), Q value = 0.96

Table S12265.  Gene #1152: 'TRIM31 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
TRIM31 MUTATED 2 0 0 3
TRIM31 WILD-TYPE 128 78 68 193
'TRIM31 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.64 (Fisher's exact test), Q value = 0.93

Table S12266.  Gene #1152: 'TRIM31 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
TRIM31 MUTATED 1 1 0 0 1 0 0 1 1
TRIM31 WILD-TYPE 39 61 28 80 68 48 43 27 73
'PHF14 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0727 (Fisher's exact test), Q value = 0.29

Table S12267.  Gene #1153: 'PHF14 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
PHF14 MUTATED 2 0 0 2
PHF14 WILD-TYPE 44 58 64 41
'PHF14 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.177 (Fisher's exact test), Q value = 0.48

Table S12268.  Gene #1153: 'PHF14 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
PHF14 MUTATED 2 0 2
PHF14 WILD-TYPE 49 83 75
'PHF14 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00544 (Fisher's exact test), Q value = 0.067

Table S12269.  Gene #1153: 'PHF14 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
PHF14 MUTATED 13 2 1 0
PHF14 WILD-TYPE 165 181 100 20

Figure S3218.  Get High-res Image Gene #1153: 'PHF14 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'PHF14 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.239 (Fisher's exact test), Q value = 0.56

Table S12270.  Gene #1153: 'PHF14 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
PHF14 MUTATED 5 1 6
PHF14 WILD-TYPE 82 79 94
'PHF14 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.75 (Fisher's exact test), Q value = 1

Table S12271.  Gene #1153: 'PHF14 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
PHF14 MUTATED 2 7 6
PHF14 WILD-TYPE 87 153 132
'PHF14 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.94 (Fisher's exact test), Q value = 1

Table S12272.  Gene #1153: 'PHF14 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
PHF14 MUTATED 8 5 2
PHF14 WILD-TYPE 174 128 70
'PHF14 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0825 (Fisher's exact test), Q value = 0.31

Table S12273.  Gene #1153: 'PHF14 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
PHF14 MUTATED 2 5 6 3
PHF14 WILD-TYPE 110 91 86 183
'PHF14 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00199 (Fisher's exact test), Q value = 0.037

Table S12274.  Gene #1153: 'PHF14 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
PHF14 MUTATED 2 3 6 2 1 0 2
PHF14 WILD-TYPE 58 47 43 38 62 125 97

Figure S3219.  Get High-res Image Gene #1153: 'PHF14 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'PHF14 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.949 (Fisher's exact test), Q value = 1

Table S12275.  Gene #1153: 'PHF14 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
PHF14 MUTATED 5 3 2 6
PHF14 WILD-TYPE 125 75 66 190
'PHF14 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.172 (Fisher's exact test), Q value = 0.47

Table S12276.  Gene #1153: 'PHF14 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
PHF14 MUTATED 1 5 0 2 5 1 1 1 0
PHF14 WILD-TYPE 39 57 28 78 64 47 42 27 74
'PHF14 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.135 (Fisher's exact test), Q value = 0.41

Table S12277.  Gene #1153: 'PHF14 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
PHF14 MUTATED 1 0 0 2
PHF14 WILD-TYPE 32 31 27 17
'PHF14 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.696 (Fisher's exact test), Q value = 0.97

Table S12278.  Gene #1153: 'PHF14 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
PHF14 MUTATED 1 0 1 1
PHF14 WILD-TYPE 53 10 23 21
'MOV10 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.441 (Fisher's exact test), Q value = 0.77

Table S12279.  Gene #1154: 'MOV10 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
MOV10 MUTATED 2 0 1 1
MOV10 WILD-TYPE 44 58 63 42
'MOV10 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.555 (Fisher's exact test), Q value = 0.87

Table S12280.  Gene #1154: 'MOV10 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
MOV10 MUTATED 2 1 1
MOV10 WILD-TYPE 49 82 76
'MOV10 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.419 (Fisher's exact test), Q value = 0.75

Table S12281.  Gene #1154: 'MOV10 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
MOV10 MUTATED 8 3 3 0
MOV10 WILD-TYPE 170 180 98 20
'MOV10 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.367 (Fisher's exact test), Q value = 0.7

Table S12282.  Gene #1154: 'MOV10 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
MOV10 MUTATED 4 1 5
MOV10 WILD-TYPE 83 79 95
'MOV10 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.734 (Fisher's exact test), Q value = 1

Table S12283.  Gene #1154: 'MOV10 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
MOV10 MUTATED 2 6 3
MOV10 WILD-TYPE 87 154 135
'MOV10 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.92 (Fisher's exact test), Q value = 1

Table S12284.  Gene #1154: 'MOV10 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
MOV10 MUTATED 6 3 2
MOV10 WILD-TYPE 176 130 70
'MOV10 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.802 (Fisher's exact test), Q value = 1

Table S12285.  Gene #1154: 'MOV10 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
MOV10 MUTATED 3 4 3 4
MOV10 WILD-TYPE 109 92 89 182
'MOV10 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.344 (Fisher's exact test), Q value = 0.67

Table S12286.  Gene #1154: 'MOV10 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
MOV10 MUTATED 3 3 2 1 2 1 2
MOV10 WILD-TYPE 57 47 47 39 61 124 97
'MOV10 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0132 (Fisher's exact test), Q value = 0.11

Table S12287.  Gene #1154: 'MOV10 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
MOV10 MUTATED 9 1 0 3
MOV10 WILD-TYPE 121 77 68 193

Figure S3220.  Get High-res Image Gene #1154: 'MOV10 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'MOV10 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0604 (Fisher's exact test), Q value = 0.27

Table S12288.  Gene #1154: 'MOV10 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
MOV10 MUTATED 5 1 1 2 2 1 1 0 0
MOV10 WILD-TYPE 35 61 27 78 67 47 42 28 74
'PTCH2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.167 (Fisher's exact test), Q value = 0.46

Table S12289.  Gene #1155: 'PTCH2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
PTCH2 MUTATED 3 1 0 1
PTCH2 WILD-TYPE 43 57 64 42
'PTCH2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0185 (Fisher's exact test), Q value = 0.14

Table S12290.  Gene #1155: 'PTCH2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
PTCH2 MUTATED 4 1 0
PTCH2 WILD-TYPE 47 82 77

Figure S3221.  Get High-res Image Gene #1155: 'PTCH2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'PTCH2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0204 (Fisher's exact test), Q value = 0.14

Table S12291.  Gene #1155: 'PTCH2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
PTCH2 MUTATED 12 3 2 2
PTCH2 WILD-TYPE 166 180 99 18

Figure S3222.  Get High-res Image Gene #1155: 'PTCH2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'PTCH2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.297 (Fisher's exact test), Q value = 0.63

Table S12292.  Gene #1155: 'PTCH2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
PTCH2 MUTATED 7 2 5
PTCH2 WILD-TYPE 80 78 95
'PTCH2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.184 (Fisher's exact test), Q value = 0.48

Table S12293.  Gene #1155: 'PTCH2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
PTCH2 MUTATED 1 8 8
PTCH2 WILD-TYPE 88 152 130
'PTCH2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S12294.  Gene #1155: 'PTCH2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
PTCH2 MUTATED 8 6 3
PTCH2 WILD-TYPE 174 127 69
'PTCH2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.556 (Fisher's exact test), Q value = 0.87

Table S12295.  Gene #1155: 'PTCH2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
PTCH2 MUTATED 3 6 4 6
PTCH2 WILD-TYPE 109 90 88 180
'PTCH2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00518 (Fisher's exact test), Q value = 0.065

Table S12296.  Gene #1155: 'PTCH2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
PTCH2 MUTATED 1 2 7 1 1 1 6
PTCH2 WILD-TYPE 59 48 42 39 62 124 93

Figure S3223.  Get High-res Image Gene #1155: 'PTCH2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'PTCH2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.495 (Fisher's exact test), Q value = 0.82

Table S12297.  Gene #1155: 'PTCH2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
PTCH2 MUTATED 8 2 2 6
PTCH2 WILD-TYPE 122 76 66 190
'PTCH2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.244 (Fisher's exact test), Q value = 0.57

Table S12298.  Gene #1155: 'PTCH2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
PTCH2 MUTATED 1 4 1 2 7 1 1 0 1
PTCH2 WILD-TYPE 39 58 27 78 62 47 42 28 73
'PTCH2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0242 (Fisher's exact test), Q value = 0.16

Table S12299.  Gene #1155: 'PTCH2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
PTCH2 MUTATED 1 0 0 3
PTCH2 WILD-TYPE 32 31 27 16

Figure S3224.  Get High-res Image Gene #1155: 'PTCH2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'PTCH2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.485 (Fisher's exact test), Q value = 0.81

Table S12300.  Gene #1155: 'PTCH2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
PTCH2 MUTATED 1 0 2 1
PTCH2 WILD-TYPE 53 10 22 21
'POMGNT1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0656 (Fisher's exact test), Q value = 0.28

Table S12301.  Gene #1156: 'POMGNT1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
POMGNT1 MUTATED 6 0 2 0
POMGNT1 WILD-TYPE 172 183 99 20
'POMGNT1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.681 (Fisher's exact test), Q value = 0.96

Table S12302.  Gene #1156: 'POMGNT1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
POMGNT1 MUTATED 3 1 2
POMGNT1 WILD-TYPE 84 79 98
'POMGNT1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.165 (Fisher's exact test), Q value = 0.46

Table S12303.  Gene #1156: 'POMGNT1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
POMGNT1 MUTATED 1 1 5
POMGNT1 WILD-TYPE 88 159 133
'POMGNT1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.548 (Fisher's exact test), Q value = 0.87

Table S12304.  Gene #1156: 'POMGNT1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
POMGNT1 MUTATED 5 1 1
POMGNT1 WILD-TYPE 177 132 71
'POMGNT1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.541 (Fisher's exact test), Q value = 0.86

Table S12305.  Gene #1156: 'POMGNT1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
POMGNT1 MUTATED 1 2 3 2
POMGNT1 WILD-TYPE 111 94 89 184
'POMGNT1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0191 (Fisher's exact test), Q value = 0.14

Table S12306.  Gene #1156: 'POMGNT1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
POMGNT1 MUTATED 1 0 4 0 1 0 2
POMGNT1 WILD-TYPE 59 50 45 40 62 125 97

Figure S3225.  Get High-res Image Gene #1156: 'POMGNT1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'POMGNT1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.49 (Fisher's exact test), Q value = 0.82

Table S12307.  Gene #1156: 'POMGNT1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
POMGNT1 MUTATED 4 1 0 3
POMGNT1 WILD-TYPE 126 77 68 193
'POMGNT1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0128 (Fisher's exact test), Q value = 0.11

Table S12308.  Gene #1156: 'POMGNT1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
POMGNT1 MUTATED 2 1 0 0 5 0 0 0 0
POMGNT1 WILD-TYPE 38 61 28 80 64 48 43 28 74

Figure S3226.  Get High-res Image Gene #1156: 'POMGNT1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'NAA10 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.663 (Fisher's exact test), Q value = 0.95

Table S12309.  Gene #1157: 'NAA10 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
NAA10 MUTATED 2 1 0 0
NAA10 WILD-TYPE 176 182 101 20
'NAA10 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.513 (Fisher's exact test), Q value = 0.83

Table S12310.  Gene #1157: 'NAA10 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
NAA10 MUTATED 2 0 1
NAA10 WILD-TYPE 85 80 99
'NAA10 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.266 (Fisher's exact test), Q value = 0.59

Table S12311.  Gene #1157: 'NAA10 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
NAA10 MUTATED 0 2 0 1
NAA10 WILD-TYPE 112 94 92 185
'NAA10 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.249 (Fisher's exact test), Q value = 0.58

Table S12312.  Gene #1157: 'NAA10 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
NAA10 MUTATED 0 1 0 1 0 0 1
NAA10 WILD-TYPE 60 49 49 39 63 125 98
'NAA10 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.743 (Fisher's exact test), Q value = 1

Table S12313.  Gene #1157: 'NAA10 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
NAA10 MUTATED 1 0 1 1
NAA10 WILD-TYPE 129 78 67 195
'NAA10 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.39 (Fisher's exact test), Q value = 0.72

Table S12314.  Gene #1157: 'NAA10 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
NAA10 MUTATED 1 0 0 0 0 0 1 0 1
NAA10 WILD-TYPE 39 62 28 80 69 48 42 28 73
'OR2A5 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0318 (Fisher's exact test), Q value = 0.18

Table S12315.  Gene #1158: 'OR2A5 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
OR2A5 MUTATED 3 0 0 1
OR2A5 WILD-TYPE 43 58 64 42

Figure S3227.  Get High-res Image Gene #1158: 'OR2A5 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'OR2A5 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.554 (Fisher's exact test), Q value = 0.87

Table S12316.  Gene #1158: 'OR2A5 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
OR2A5 MUTATED 2 1 1
OR2A5 WILD-TYPE 49 82 76
'OR2A5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.235 (Fisher's exact test), Q value = 0.56

Table S12317.  Gene #1158: 'OR2A5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
OR2A5 MUTATED 7 2 3 1
OR2A5 WILD-TYPE 171 181 98 19
'OR2A5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.662 (Fisher's exact test), Q value = 0.95

Table S12318.  Gene #1158: 'OR2A5 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
OR2A5 MUTATED 4 2 2
OR2A5 WILD-TYPE 83 78 98
'OR2A5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0135 (Fisher's exact test), Q value = 0.11

Table S12319.  Gene #1158: 'OR2A5 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
OR2A5 MUTATED 3 0 6
OR2A5 WILD-TYPE 86 160 132

Figure S3228.  Get High-res Image Gene #1158: 'OR2A5 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'OR2A5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0822 (Fisher's exact test), Q value = 0.31

Table S12320.  Gene #1158: 'OR2A5 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
OR2A5 MUTATED 4 1 4
OR2A5 WILD-TYPE 178 132 68
'OR2A5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.934 (Fisher's exact test), Q value = 1

Table S12321.  Gene #1158: 'OR2A5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
OR2A5 MUTATED 3 2 3 4
OR2A5 WILD-TYPE 109 94 89 182
'OR2A5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.172 (Fisher's exact test), Q value = 0.47

Table S12322.  Gene #1158: 'OR2A5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
OR2A5 MUTATED 1 0 1 3 3 1 3
OR2A5 WILD-TYPE 59 50 48 37 60 124 96
'OR2A5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.427 (Fisher's exact test), Q value = 0.75

Table S12323.  Gene #1158: 'OR2A5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
OR2A5 MUTATED 3 1 4 5
OR2A5 WILD-TYPE 127 77 64 191
'OR2A5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.122 (Fisher's exact test), Q value = 0.39

Table S12324.  Gene #1158: 'OR2A5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
OR2A5 MUTATED 2 1 1 1 2 2 4 0 0
OR2A5 WILD-TYPE 38 61 27 79 67 46 39 28 74
'OR2A5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.594 (Fisher's exact test), Q value = 0.9

Table S12325.  Gene #1158: 'OR2A5 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
OR2A5 MUTATED 2 0 1 1
OR2A5 WILD-TYPE 31 31 26 18
'OR2A5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.319 (Fisher's exact test), Q value = 0.65

Table S12326.  Gene #1158: 'OR2A5 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
OR2A5 MUTATED 1 0 1 2
OR2A5 WILD-TYPE 53 10 23 20
'HAUS3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0082 (Fisher's exact test), Q value = 0.084

Table S12327.  Gene #1159: 'HAUS3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
HAUS3 MUTATED 0 0 0 3
HAUS3 WILD-TYPE 46 58 64 40

Figure S3229.  Get High-res Image Gene #1159: 'HAUS3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'HAUS3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S12328.  Gene #1159: 'HAUS3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
HAUS3 MUTATED 1 1 1
HAUS3 WILD-TYPE 50 82 76
'HAUS3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.163 (Fisher's exact test), Q value = 0.46

Table S12329.  Gene #1159: 'HAUS3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
HAUS3 MUTATED 7 3 0 0
HAUS3 WILD-TYPE 171 180 101 20
'HAUS3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.57 (Fisher's exact test), Q value = 0.88

Table S12330.  Gene #1159: 'HAUS3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
HAUS3 MUTATED 1 3 3
HAUS3 WILD-TYPE 86 77 97
'HAUS3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.696 (Fisher's exact test), Q value = 0.97

Table S12331.  Gene #1159: 'HAUS3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
HAUS3 MUTATED 1 5 3
HAUS3 WILD-TYPE 88 155 135
'HAUS3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.404 (Fisher's exact test), Q value = 0.73

Table S12332.  Gene #1159: 'HAUS3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
HAUS3 MUTATED 5 4 0
HAUS3 WILD-TYPE 177 129 72
'HAUS3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S12333.  Gene #1159: 'HAUS3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
HAUS3 MUTATED 2 2 2 4
HAUS3 WILD-TYPE 110 94 90 182
'HAUS3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00589 (Fisher's exact test), Q value = 0.07

Table S12334.  Gene #1159: 'HAUS3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
HAUS3 MUTATED 4 0 3 0 0 0 3
HAUS3 WILD-TYPE 56 50 46 40 63 125 96

Figure S3230.  Get High-res Image Gene #1159: 'HAUS3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'HAUS3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.804 (Fisher's exact test), Q value = 1

Table S12335.  Gene #1159: 'HAUS3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
HAUS3 MUTATED 4 1 1 3
HAUS3 WILD-TYPE 126 77 67 193
'HAUS3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.197 (Fisher's exact test), Q value = 0.5

Table S12336.  Gene #1159: 'HAUS3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
HAUS3 MUTATED 1 0 2 1 3 0 0 1 1
HAUS3 WILD-TYPE 39 62 26 79 66 48 43 27 73
'IFIH1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0163 (Fisher's exact test), Q value = 0.13

Table S12337.  Gene #1160: 'IFIH1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
IFIH1 MUTATED 1 0 0 3
IFIH1 WILD-TYPE 45 58 64 40

Figure S3231.  Get High-res Image Gene #1160: 'IFIH1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'IFIH1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0621 (Fisher's exact test), Q value = 0.27

Table S12338.  Gene #1160: 'IFIH1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
IFIH1 MUTATED 3 1 0
IFIH1 WILD-TYPE 48 82 77
'IFIH1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0552 (Fisher's exact test), Q value = 0.26

Table S12339.  Gene #1160: 'IFIH1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
IFIH1 MUTATED 11 2 3 0
IFIH1 WILD-TYPE 167 181 98 20
'IFIH1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0251 (Fisher's exact test), Q value = 0.16

Table S12340.  Gene #1160: 'IFIH1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
IFIH1 MUTATED 7 0 5
IFIH1 WILD-TYPE 80 80 95

Figure S3232.  Get High-res Image Gene #1160: 'IFIH1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'IFIH1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.424 (Fisher's exact test), Q value = 0.75

Table S12341.  Gene #1160: 'IFIH1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
IFIH1 MUTATED 1 5 6
IFIH1 WILD-TYPE 88 155 132
'IFIH1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.543 (Fisher's exact test), Q value = 0.86

Table S12342.  Gene #1160: 'IFIH1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
IFIH1 MUTATED 5 6 1
IFIH1 WILD-TYPE 177 127 71
'IFIH1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0893 (Fisher's exact test), Q value = 0.32

Table S12343.  Gene #1160: 'IFIH1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
IFIH1 MUTATED 2 6 5 3
IFIH1 WILD-TYPE 110 90 87 183
'IFIH1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00499 (Fisher's exact test), Q value = 0.064

Table S12344.  Gene #1160: 'IFIH1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
IFIH1 MUTATED 0 2 4 3 4 0 3
IFIH1 WILD-TYPE 60 48 45 37 59 125 96

Figure S3233.  Get High-res Image Gene #1160: 'IFIH1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'IFIH1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.118 (Fisher's exact test), Q value = 0.38

Table S12345.  Gene #1160: 'IFIH1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
IFIH1 MUTATED 4 6 1 4
IFIH1 WILD-TYPE 126 72 67 192
'IFIH1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.1 (Fisher's exact test), Q value = 0.35

Table S12346.  Gene #1160: 'IFIH1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
IFIH1 MUTATED 1 6 1 2 4 0 0 0 1
IFIH1 WILD-TYPE 39 56 27 78 65 48 43 28 73
'IFIH1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.185 (Fisher's exact test), Q value = 0.49

Table S12347.  Gene #1160: 'IFIH1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
IFIH1 MUTATED 0 3 1 2
IFIH1 WILD-TYPE 33 28 26 17
'IFIH1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.684 (Fisher's exact test), Q value = 0.96

Table S12348.  Gene #1160: 'IFIH1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
IFIH1 MUTATED 4 0 2 0
IFIH1 WILD-TYPE 50 10 22 22
'AKAP11 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00091 (Fisher's exact test), Q value = 0.023

Table S12349.  Gene #1161: 'AKAP11 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
AKAP11 MUTATED 5 0 0 4
AKAP11 WILD-TYPE 41 58 64 39

Figure S3234.  Get High-res Image Gene #1161: 'AKAP11 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'AKAP11 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.34 (Fisher's exact test), Q value = 0.67

Table S12350.  Gene #1161: 'AKAP11 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
AKAP11 MUTATED 4 2 3
AKAP11 WILD-TYPE 47 81 74
'AKAP11 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0349 (Fisher's exact test), Q value = 0.19

Table S12351.  Gene #1161: 'AKAP11 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
AKAP11 MUTATED 13 3 7 1
AKAP11 WILD-TYPE 165 180 94 19

Figure S3235.  Get High-res Image Gene #1161: 'AKAP11 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'AKAP11 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.246 (Fisher's exact test), Q value = 0.57

Table S12352.  Gene #1161: 'AKAP11 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
AKAP11 MUTATED 7 2 8
AKAP11 WILD-TYPE 80 78 92
'AKAP11 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.048 (Fisher's exact test), Q value = 0.23

Table S12353.  Gene #1161: 'AKAP11 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
AKAP11 MUTATED 1 6 11
AKAP11 WILD-TYPE 88 154 127

Figure S3236.  Get High-res Image Gene #1161: 'AKAP11 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'AKAP11 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.295 (Fisher's exact test), Q value = 0.62

Table S12354.  Gene #1161: 'AKAP11 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
AKAP11 MUTATED 12 4 2
AKAP11 WILD-TYPE 170 129 70
'AKAP11 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.333 (Fisher's exact test), Q value = 0.66

Table S12355.  Gene #1161: 'AKAP11 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
AKAP11 MUTATED 4 7 7 7
AKAP11 WILD-TYPE 108 89 85 179
'AKAP11 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00353 (Fisher's exact test), Q value = 0.054

Table S12356.  Gene #1161: 'AKAP11 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
AKAP11 MUTATED 4 0 7 3 4 1 6
AKAP11 WILD-TYPE 56 50 42 37 59 124 93

Figure S3237.  Get High-res Image Gene #1161: 'AKAP11 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'AKAP11 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.209 (Fisher's exact test), Q value = 0.52

Table S12357.  Gene #1161: 'AKAP11 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
AKAP11 MUTATED 10 5 2 6
AKAP11 WILD-TYPE 120 73 66 190
'AKAP11 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0294 (Fisher's exact test), Q value = 0.18

Table S12358.  Gene #1161: 'AKAP11 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
AKAP11 MUTATED 2 5 2 7 6 1 0 0 0
AKAP11 WILD-TYPE 38 57 26 73 63 47 43 28 74

Figure S3238.  Get High-res Image Gene #1161: 'AKAP11 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'AKAP11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0722 (Fisher's exact test), Q value = 0.29

Table S12359.  Gene #1161: 'AKAP11 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
AKAP11 MUTATED 1 0 1 3
AKAP11 WILD-TYPE 32 31 26 16
'AKAP11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.579 (Fisher's exact test), Q value = 0.88

Table S12360.  Gene #1161: 'AKAP11 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
AKAP11 MUTATED 3 0 2 0
AKAP11 WILD-TYPE 51 10 22 22
'CRTC1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00747 (Fisher's exact test), Q value = 0.08

Table S12361.  Gene #1162: 'CRTC1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
CRTC1 MUTATED 11 2 0 0
CRTC1 WILD-TYPE 167 181 101 20

Figure S3239.  Get High-res Image Gene #1162: 'CRTC1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'CRTC1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0863 (Fisher's exact test), Q value = 0.32

Table S12362.  Gene #1162: 'CRTC1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
CRTC1 MUTATED 3 1 8
CRTC1 WILD-TYPE 84 79 92
'CRTC1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.196 (Fisher's exact test), Q value = 0.5

Table S12363.  Gene #1162: 'CRTC1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
CRTC1 MUTATED 1 3 7
CRTC1 WILD-TYPE 88 157 131
'CRTC1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.564 (Fisher's exact test), Q value = 0.87

Table S12364.  Gene #1162: 'CRTC1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
CRTC1 MUTATED 7 3 1
CRTC1 WILD-TYPE 175 130 71
'CRTC1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00286 (Fisher's exact test), Q value = 0.048

Table S12365.  Gene #1162: 'CRTC1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
CRTC1 MUTATED 1 7 4 1
CRTC1 WILD-TYPE 111 89 88 185

Figure S3240.  Get High-res Image Gene #1162: 'CRTC1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'CRTC1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S12366.  Gene #1162: 'CRTC1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
CRTC1 MUTATED 0 2 9 1 0 1 0
CRTC1 WILD-TYPE 60 48 40 39 63 124 99

Figure S3241.  Get High-res Image Gene #1162: 'CRTC1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CRTC1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.336 (Fisher's exact test), Q value = 0.66

Table S12367.  Gene #1162: 'CRTC1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
CRTC1 MUTATED 6 2 0 5
CRTC1 WILD-TYPE 124 76 68 191
'CRTC1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.893 (Fisher's exact test), Q value = 1

Table S12368.  Gene #1162: 'CRTC1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
CRTC1 MUTATED 2 2 0 2 3 1 2 0 1
CRTC1 WILD-TYPE 38 60 28 78 66 47 41 28 73
'CRTC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.137 (Fisher's exact test), Q value = 0.41

Table S12369.  Gene #1162: 'CRTC1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
CRTC1 MUTATED 1 0 0 2
CRTC1 WILD-TYPE 32 31 27 17
'CRTC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S12370.  Gene #1162: 'CRTC1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
CRTC1 MUTATED 2 0 1 0
CRTC1 WILD-TYPE 52 10 23 22
'PKHD1L1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 4e-05 (Fisher's exact test), Q value = 0.0027

Table S12371.  Gene #1163: 'PKHD1L1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
PKHD1L1 MUTATED 9 0 1 6
PKHD1L1 WILD-TYPE 37 58 63 37

Figure S3242.  Get High-res Image Gene #1163: 'PKHD1L1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'PKHD1L1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00152 (Fisher's exact test), Q value = 0.032

Table S12372.  Gene #1163: 'PKHD1L1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
PKHD1L1 MUTATED 10 2 4
PKHD1L1 WILD-TYPE 41 81 73

Figure S3243.  Get High-res Image Gene #1163: 'PKHD1L1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'PKHD1L1 MUTATION STATUS' versus 'CN_CNMF'

P value = 9e-05 (Fisher's exact test), Q value = 0.0048

Table S12373.  Gene #1163: 'PKHD1L1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
PKHD1L1 MUTATED 32 7 6 1
PKHD1L1 WILD-TYPE 146 176 95 19

Figure S3244.  Get High-res Image Gene #1163: 'PKHD1L1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'PKHD1L1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.118 (Fisher's exact test), Q value = 0.38

Table S12374.  Gene #1163: 'PKHD1L1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
PKHD1L1 MUTATED 10 5 16
PKHD1L1 WILD-TYPE 77 75 84
'PKHD1L1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0494 (Fisher's exact test), Q value = 0.24

Table S12375.  Gene #1163: 'PKHD1L1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
PKHD1L1 MUTATED 3 17 17
PKHD1L1 WILD-TYPE 86 143 121

Figure S3245.  Get High-res Image Gene #1163: 'PKHD1L1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'PKHD1L1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.299 (Fisher's exact test), Q value = 0.63

Table S12376.  Gene #1163: 'PKHD1L1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
PKHD1L1 MUTATED 14 17 6
PKHD1L1 WILD-TYPE 168 116 66
'PKHD1L1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0607 (Fisher's exact test), Q value = 0.27

Table S12377.  Gene #1163: 'PKHD1L1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
PKHD1L1 MUTATED 6 14 12 14
PKHD1L1 WILD-TYPE 106 82 80 172
'PKHD1L1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 3e-05 (Fisher's exact test), Q value = 0.0022

Table S12378.  Gene #1163: 'PKHD1L1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
PKHD1L1 MUTATED 3 7 13 4 4 2 13
PKHD1L1 WILD-TYPE 57 43 36 36 59 123 86

Figure S3246.  Get High-res Image Gene #1163: 'PKHD1L1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'PKHD1L1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.278 (Fisher's exact test), Q value = 0.61

Table S12379.  Gene #1163: 'PKHD1L1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
PKHD1L1 MUTATED 17 7 3 18
PKHD1L1 WILD-TYPE 113 71 65 178
'PKHD1L1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00837 (Fisher's exact test), Q value = 0.085

Table S12380.  Gene #1163: 'PKHD1L1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
PKHD1L1 MUTATED 6 8 2 6 15 2 2 2 2
PKHD1L1 WILD-TYPE 34 54 26 74 54 46 41 26 72

Figure S3247.  Get High-res Image Gene #1163: 'PKHD1L1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'PKHD1L1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00491 (Fisher's exact test), Q value = 0.063

Table S12381.  Gene #1163: 'PKHD1L1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
PKHD1L1 MUTATED 2 1 3 7
PKHD1L1 WILD-TYPE 31 30 24 12

Figure S3248.  Get High-res Image Gene #1163: 'PKHD1L1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'PKHD1L1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.459 (Fisher's exact test), Q value = 0.79

Table S12382.  Gene #1163: 'PKHD1L1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
PKHD1L1 MUTATED 8 2 2 1
PKHD1L1 WILD-TYPE 46 8 22 21
'UFSP2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0428 (Fisher's exact test), Q value = 0.22

Table S12383.  Gene #1164: 'UFSP2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
UFSP2 MUTATED 5 0 0 0
UFSP2 WILD-TYPE 173 183 101 20

Figure S3249.  Get High-res Image Gene #1164: 'UFSP2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'UFSP2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.779 (Fisher's exact test), Q value = 1

Table S12384.  Gene #1164: 'UFSP2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
UFSP2 MUTATED 1 0 2
UFSP2 WILD-TYPE 86 80 98
'UFSP2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.553 (Fisher's exact test), Q value = 0.87

Table S12385.  Gene #1164: 'UFSP2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
UFSP2 MUTATED 0 3 1
UFSP2 WILD-TYPE 89 157 137
'UFSP2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.327 (Fisher's exact test), Q value = 0.66

Table S12386.  Gene #1164: 'UFSP2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
UFSP2 MUTATED 1 3 0
UFSP2 WILD-TYPE 181 130 72
'UFSP2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.329 (Fisher's exact test), Q value = 0.66

Table S12387.  Gene #1164: 'UFSP2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
UFSP2 MUTATED 0 2 0 3
UFSP2 WILD-TYPE 112 94 92 183
'UFSP2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.146 (Fisher's exact test), Q value = 0.43

Table S12388.  Gene #1164: 'UFSP2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
UFSP2 MUTATED 1 0 2 0 0 0 2
UFSP2 WILD-TYPE 59 50 47 40 63 125 97
'UFSP2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.741 (Fisher's exact test), Q value = 1

Table S12389.  Gene #1164: 'UFSP2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
UFSP2 MUTATED 2 0 0 2
UFSP2 WILD-TYPE 128 78 68 194
'UFSP2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.253 (Fisher's exact test), Q value = 0.58

Table S12390.  Gene #1164: 'UFSP2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
UFSP2 MUTATED 0 0 0 0 3 0 0 0 1
UFSP2 WILD-TYPE 40 62 28 80 66 48 43 28 73
'MUC7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.284 (Fisher's exact test), Q value = 0.61

Table S12391.  Gene #1165: 'MUC7 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
MUC7 MUTATED 6 2 2 1
MUC7 WILD-TYPE 172 181 99 19
'MUC7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.296 (Fisher's exact test), Q value = 0.63

Table S12392.  Gene #1165: 'MUC7 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
MUC7 MUTATED 5 1 3
MUC7 WILD-TYPE 82 79 97
'MUC7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.461 (Fisher's exact test), Q value = 0.79

Table S12393.  Gene #1165: 'MUC7 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
MUC7 MUTATED 3 6 2
MUC7 WILD-TYPE 86 154 136
'MUC7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0126 (Fisher's exact test), Q value = 0.11

Table S12394.  Gene #1165: 'MUC7 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
MUC7 MUTATED 2 3 6
MUC7 WILD-TYPE 180 130 66

Figure S3250.  Get High-res Image Gene #1165: 'MUC7 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'MUC7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0411 (Fisher's exact test), Q value = 0.21

Table S12395.  Gene #1165: 'MUC7 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
MUC7 MUTATED 1 6 2 2
MUC7 WILD-TYPE 111 90 90 184

Figure S3251.  Get High-res Image Gene #1165: 'MUC7 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'MUC7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0135 (Fisher's exact test), Q value = 0.11

Table S12396.  Gene #1165: 'MUC7 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
MUC7 MUTATED 1 4 3 0 1 0 2
MUC7 WILD-TYPE 59 46 46 40 62 125 97

Figure S3252.  Get High-res Image Gene #1165: 'MUC7 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'MUC7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.171 (Fisher's exact test), Q value = 0.47

Table S12397.  Gene #1165: 'MUC7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
MUC7 MUTATED 6 2 0 3
MUC7 WILD-TYPE 124 76 68 193
'MUC7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.43 (Fisher's exact test), Q value = 0.76

Table S12398.  Gene #1165: 'MUC7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
MUC7 MUTATED 2 2 1 0 3 0 1 0 2
MUC7 WILD-TYPE 38 60 27 80 66 48 42 28 72
'MUC7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0257 (Fisher's exact test), Q value = 0.16

Table S12399.  Gene #1165: 'MUC7 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
MUC7 MUTATED 3 0 0 3
MUC7 WILD-TYPE 30 31 27 16

Figure S3253.  Get High-res Image Gene #1165: 'MUC7 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'MUC7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.682 (Fisher's exact test), Q value = 0.96

Table S12400.  Gene #1165: 'MUC7 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
MUC7 MUTATED 4 0 2 0
MUC7 WILD-TYPE 50 10 22 22
'RIMBP3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.441 (Fisher's exact test), Q value = 0.77

Table S12401.  Gene #1166: 'RIMBP3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
RIMBP3 MUTATED 4 2 0 0
RIMBP3 WILD-TYPE 174 181 101 20
'RIMBP3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S12402.  Gene #1166: 'RIMBP3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
RIMBP3 MUTATED 2 1 2
RIMBP3 WILD-TYPE 85 79 98
'RIMBP3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S12403.  Gene #1166: 'RIMBP3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
RIMBP3 MUTATED 1 2 2
RIMBP3 WILD-TYPE 88 158 136
'RIMBP3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.504 (Fisher's exact test), Q value = 0.83

Table S12404.  Gene #1166: 'RIMBP3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
RIMBP3 MUTATED 4 1 0
RIMBP3 WILD-TYPE 178 132 72
'RIMBP3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.558 (Fisher's exact test), Q value = 0.87

Table S12405.  Gene #1166: 'RIMBP3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
RIMBP3 MUTATED 2 1 2 1
RIMBP3 WILD-TYPE 110 95 90 185
'RIMBP3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.249 (Fisher's exact test), Q value = 0.58

Table S12406.  Gene #1166: 'RIMBP3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
RIMBP3 MUTATED 1 1 2 0 1 0 1
RIMBP3 WILD-TYPE 59 49 47 40 62 125 98
'RIMBP3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.244 (Fisher's exact test), Q value = 0.57

Table S12407.  Gene #1166: 'RIMBP3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
RIMBP3 MUTATED 3 2 0 1
RIMBP3 WILD-TYPE 127 76 68 195
'RIMBP3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00952 (Fisher's exact test), Q value = 0.092

Table S12408.  Gene #1166: 'RIMBP3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
RIMBP3 MUTATED 1 3 2 0 0 0 0 0 0
RIMBP3 WILD-TYPE 39 59 26 80 69 48 43 28 74

Figure S3254.  Get High-res Image Gene #1166: 'RIMBP3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'S100A2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0854 (Fisher's exact test), Q value = 0.32

Table S12409.  Gene #1167: 'S100A2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
S100A2 MUTATED 1 2 4 1
S100A2 WILD-TYPE 177 181 97 19
'S100A2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.775 (Fisher's exact test), Q value = 1

Table S12410.  Gene #1167: 'S100A2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
S100A2 MUTATED 1 2 3
S100A2 WILD-TYPE 86 78 97
'S100A2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.295 (Fisher's exact test), Q value = 0.62

Table S12411.  Gene #1167: 'S100A2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
S100A2 MUTATED 0 4 1
S100A2 WILD-TYPE 89 156 137
'S100A2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.595 (Fisher's exact test), Q value = 0.9

Table S12412.  Gene #1167: 'S100A2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
S100A2 MUTATED 2 3 0
S100A2 WILD-TYPE 180 130 72
'S100A2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.768 (Fisher's exact test), Q value = 1

Table S12413.  Gene #1167: 'S100A2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
S100A2 MUTATED 2 2 2 2
S100A2 WILD-TYPE 110 94 90 184
'S100A2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.297 (Fisher's exact test), Q value = 0.63

Table S12414.  Gene #1167: 'S100A2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
S100A2 MUTATED 2 1 1 0 2 0 2
S100A2 WILD-TYPE 58 49 48 40 61 125 97
'S100A2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.51 (Fisher's exact test), Q value = 0.83

Table S12415.  Gene #1167: 'S100A2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
S100A2 MUTATED 2 2 2 2
S100A2 WILD-TYPE 128 76 66 194
'S100A2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0828 (Fisher's exact test), Q value = 0.31

Table S12416.  Gene #1167: 'S100A2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
S100A2 MUTATED 0 2 2 0 1 1 2 0 0
S100A2 WILD-TYPE 40 60 26 80 68 47 41 28 74
'S100A2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.418 (Fisher's exact test), Q value = 0.75

Table S12417.  Gene #1167: 'S100A2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
S100A2 MUTATED 0 2 1 0
S100A2 WILD-TYPE 33 29 26 19
'S100A2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.313 (Fisher's exact test), Q value = 0.64

Table S12418.  Gene #1167: 'S100A2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
S100A2 MUTATED 1 1 1 0
S100A2 WILD-TYPE 53 9 23 22
'PCSK1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00375 (Fisher's exact test), Q value = 0.056

Table S12419.  Gene #1168: 'PCSK1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
PCSK1 MUTATED 1 0 0 4
PCSK1 WILD-TYPE 45 58 64 39

Figure S3255.  Get High-res Image Gene #1168: 'PCSK1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'PCSK1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.638 (Fisher's exact test), Q value = 0.93

Table S12420.  Gene #1168: 'PCSK1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
PCSK1 MUTATED 2 1 2
PCSK1 WILD-TYPE 49 82 75
'PCSK1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0824 (Fisher's exact test), Q value = 0.31

Table S12421.  Gene #1168: 'PCSK1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
PCSK1 MUTATED 12 3 4 0
PCSK1 WILD-TYPE 166 180 97 20
'PCSK1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0158 (Fisher's exact test), Q value = 0.12

Table S12422.  Gene #1168: 'PCSK1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
PCSK1 MUTATED 7 0 7
PCSK1 WILD-TYPE 80 80 93

Figure S3256.  Get High-res Image Gene #1168: 'PCSK1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'PCSK1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.451 (Fisher's exact test), Q value = 0.78

Table S12423.  Gene #1168: 'PCSK1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
PCSK1 MUTATED 1 7 5
PCSK1 WILD-TYPE 88 153 133
'PCSK1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.363 (Fisher's exact test), Q value = 0.69

Table S12424.  Gene #1168: 'PCSK1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
PCSK1 MUTATED 5 7 1
PCSK1 WILD-TYPE 177 126 71
'PCSK1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.356 (Fisher's exact test), Q value = 0.68

Table S12425.  Gene #1168: 'PCSK1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
PCSK1 MUTATED 3 6 5 5
PCSK1 WILD-TYPE 109 90 87 181
'PCSK1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.125 (Fisher's exact test), Q value = 0.39

Table S12426.  Gene #1168: 'PCSK1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
PCSK1 MUTATED 2 2 5 2 3 1 4
PCSK1 WILD-TYPE 58 48 44 38 60 124 95
'PCSK1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.565 (Fisher's exact test), Q value = 0.87

Table S12427.  Gene #1168: 'PCSK1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
PCSK1 MUTATED 7 4 1 7
PCSK1 WILD-TYPE 123 74 67 189
'PCSK1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.114 (Fisher's exact test), Q value = 0.37

Table S12428.  Gene #1168: 'PCSK1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
PCSK1 MUTATED 1 5 1 1 6 0 3 0 2
PCSK1 WILD-TYPE 39 57 27 79 63 48 40 28 72
'PCSK1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.354 (Fisher's exact test), Q value = 0.68

Table S12429.  Gene #1168: 'PCSK1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
PCSK1 MUTATED 2 1 1 3
PCSK1 WILD-TYPE 31 30 26 16
'PCSK1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.885 (Fisher's exact test), Q value = 1

Table S12430.  Gene #1168: 'PCSK1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
PCSK1 MUTATED 5 0 1 1
PCSK1 WILD-TYPE 49 10 23 21
'RTN4 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00286 (Fisher's exact test), Q value = 0.048

Table S12431.  Gene #1169: 'RTN4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
RTN4 MUTATED 4 0 0 4
RTN4 WILD-TYPE 42 58 64 39

Figure S3257.  Get High-res Image Gene #1169: 'RTN4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'RTN4 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00347 (Fisher's exact test), Q value = 0.054

Table S12432.  Gene #1169: 'RTN4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
RTN4 MUTATED 6 1 1
RTN4 WILD-TYPE 45 82 76

Figure S3258.  Get High-res Image Gene #1169: 'RTN4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'RTN4 MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S12433.  Gene #1169: 'RTN4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
RTN4 MUTATED 21 0 0 0
RTN4 WILD-TYPE 157 183 101 20

Figure S3259.  Get High-res Image Gene #1169: 'RTN4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'RTN4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0131 (Fisher's exact test), Q value = 0.11

Table S12434.  Gene #1169: 'RTN4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
RTN4 MUTATED 5 0 9
RTN4 WILD-TYPE 82 80 91

Figure S3260.  Get High-res Image Gene #1169: 'RTN4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'RTN4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.493 (Fisher's exact test), Q value = 0.82

Table S12435.  Gene #1169: 'RTN4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
RTN4 MUTATED 4 6 9
RTN4 WILD-TYPE 85 154 129
'RTN4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.549 (Fisher's exact test), Q value = 0.87

Table S12436.  Gene #1169: 'RTN4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
RTN4 MUTATED 9 5 5
RTN4 WILD-TYPE 173 128 67
'RTN4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.139 (Fisher's exact test), Q value = 0.41

Table S12437.  Gene #1169: 'RTN4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
RTN4 MUTATED 1 5 6 9
RTN4 WILD-TYPE 111 91 86 177
'RTN4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00471 (Fisher's exact test), Q value = 0.062

Table S12438.  Gene #1169: 'RTN4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
RTN4 MUTATED 2 1 7 2 1 1 7
RTN4 WILD-TYPE 58 49 42 38 62 124 92

Figure S3261.  Get High-res Image Gene #1169: 'RTN4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'RTN4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.239 (Fisher's exact test), Q value = 0.56

Table S12439.  Gene #1169: 'RTN4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
RTN4 MUTATED 6 4 0 10
RTN4 WILD-TYPE 124 74 68 186
'RTN4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.374 (Fisher's exact test), Q value = 0.7

Table S12440.  Gene #1169: 'RTN4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
RTN4 MUTATED 2 3 2 2 7 1 1 0 2
RTN4 WILD-TYPE 38 59 26 78 62 47 42 28 72
'RTN4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 7e-04 (Fisher's exact test), Q value = 0.019

Table S12441.  Gene #1169: 'RTN4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
RTN4 MUTATED 0 0 0 4
RTN4 WILD-TYPE 33 31 27 15

Figure S3262.  Get High-res Image Gene #1169: 'RTN4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'RTN4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.869 (Fisher's exact test), Q value = 1

Table S12442.  Gene #1169: 'RTN4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
RTN4 MUTATED 3 0 1 0
RTN4 WILD-TYPE 51 10 23 22
'C14ORF104 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0655 (Fisher's exact test), Q value = 0.28

Table S12443.  Gene #1170: 'C14ORF104 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
C14ORF104 MUTATED 1 0 0 2
C14ORF104 WILD-TYPE 45 58 64 41
'C14ORF104 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.788 (Fisher's exact test), Q value = 1

Table S12444.  Gene #1170: 'C14ORF104 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
C14ORF104 MUTATED 0 2 1
C14ORF104 WILD-TYPE 51 81 76
'C14ORF104 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.387 (Fisher's exact test), Q value = 0.71

Table S12445.  Gene #1170: 'C14ORF104 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
C14ORF104 MUTATED 4 1 0 0
C14ORF104 WILD-TYPE 174 182 101 20
'C14ORF104 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.797 (Fisher's exact test), Q value = 1

Table S12446.  Gene #1170: 'C14ORF104 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
C14ORF104 MUTATED 0 2 1
C14ORF104 WILD-TYPE 89 158 137
'C14ORF104 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.589 (Fisher's exact test), Q value = 0.89

Table S12447.  Gene #1170: 'C14ORF104 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
C14ORF104 MUTATED 1 2 0
C14ORF104 WILD-TYPE 181 131 72
'C14ORF104 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.873 (Fisher's exact test), Q value = 1

Table S12448.  Gene #1170: 'C14ORF104 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
C14ORF104 MUTATED 1 0 1 3
C14ORF104 WILD-TYPE 111 96 91 183
'C14ORF104 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.8 (Fisher's exact test), Q value = 1

Table S12449.  Gene #1170: 'C14ORF104 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
C14ORF104 MUTATED 1 1 1 0 0 1 1
C14ORF104 WILD-TYPE 59 49 48 40 63 124 98
'C14ORF104 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.931 (Fisher's exact test), Q value = 1

Table S12450.  Gene #1170: 'C14ORF104 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
C14ORF104 MUTATED 1 1 0 3
C14ORF104 WILD-TYPE 129 77 68 193
'C14ORF104 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.724 (Fisher's exact test), Q value = 0.99

Table S12451.  Gene #1170: 'C14ORF104 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
C14ORF104 MUTATED 0 1 1 1 1 0 1 0 0
C14ORF104 WILD-TYPE 40 61 27 79 68 48 42 28 74
'USF1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.176 (Fisher's exact test), Q value = 0.48

Table S12452.  Gene #1171: 'USF1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
USF1 MUTATED 4 0 1 0
USF1 WILD-TYPE 174 183 100 20
'USF1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.111 (Fisher's exact test), Q value = 0.37

Table S12453.  Gene #1171: 'USF1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
USF1 MUTATED 0 0 3
USF1 WILD-TYPE 87 80 97
'USF1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.634 (Fisher's exact test), Q value = 0.93

Table S12454.  Gene #1171: 'USF1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
USF1 MUTATED 0 3 2
USF1 WILD-TYPE 89 157 136
'USF1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.27 (Fisher's exact test), Q value = 0.6

Table S12455.  Gene #1171: 'USF1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
USF1 MUTATED 1 2 2
USF1 WILD-TYPE 181 131 70
'USF1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.487 (Fisher's exact test), Q value = 0.81

Table S12456.  Gene #1171: 'USF1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
USF1 MUTATED 0 2 1 2
USF1 WILD-TYPE 112 94 91 184
'USF1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.117 (Fisher's exact test), Q value = 0.38

Table S12457.  Gene #1171: 'USF1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
USF1 MUTATED 0 1 2 0 0 0 2
USF1 WILD-TYPE 60 49 47 40 63 125 97
'USF1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.509 (Fisher's exact test), Q value = 0.83

Table S12458.  Gene #1171: 'USF1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
USF1 MUTATED 3 0 0 2
USF1 WILD-TYPE 127 78 68 194
'USF1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0584 (Fisher's exact test), Q value = 0.26

Table S12459.  Gene #1171: 'USF1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
USF1 MUTATED 0 1 2 0 2 0 0 0 0
USF1 WILD-TYPE 40 61 26 80 67 48 43 28 74
'KLF12 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.788 (Fisher's exact test), Q value = 1

Table S12460.  Gene #1172: 'KLF12 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
KLF12 MUTATED 3 1 1 0
KLF12 WILD-TYPE 175 182 100 20
'KLF12 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S12461.  Gene #1172: 'KLF12 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
KLF12 MUTATED 1 1 1
KLF12 WILD-TYPE 86 79 99
'KLF12 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0182 (Fisher's exact test), Q value = 0.13

Table S12462.  Gene #1172: 'KLF12 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
KLF12 MUTATED 0 0 4
KLF12 WILD-TYPE 89 160 134

Figure S3263.  Get High-res Image Gene #1172: 'KLF12 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'KLF12 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.672 (Fisher's exact test), Q value = 0.95

Table S12463.  Gene #1172: 'KLF12 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
KLF12 MUTATED 3 1 0
KLF12 WILD-TYPE 179 132 72
'KLF12 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.641 (Fisher's exact test), Q value = 0.93

Table S12464.  Gene #1172: 'KLF12 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
KLF12 MUTATED 1 2 0 2
KLF12 WILD-TYPE 111 94 92 184
'KLF12 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.343 (Fisher's exact test), Q value = 0.67

Table S12465.  Gene #1172: 'KLF12 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
KLF12 MUTATED 0 0 0 2 1 1 1
KLF12 WILD-TYPE 60 50 49 38 62 124 98
'KLF12 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.508 (Fisher's exact test), Q value = 0.83

Table S12466.  Gene #1172: 'KLF12 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
KLF12 MUTATED 3 0 0 2
KLF12 WILD-TYPE 127 78 68 194
'KLF12 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.597 (Fisher's exact test), Q value = 0.9

Table S12467.  Gene #1172: 'KLF12 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
KLF12 MUTATED 1 0 0 1 0 1 0 1 1
KLF12 WILD-TYPE 39 62 28 79 69 47 43 27 73
'VIM MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.066 (Fisher's exact test), Q value = 0.28

Table S12468.  Gene #1173: 'VIM MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
VIM MUTATED 1 0 0 2
VIM WILD-TYPE 45 58 64 41
'VIM MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.349 (Fisher's exact test), Q value = 0.68

Table S12469.  Gene #1173: 'VIM MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
VIM MUTATED 1 0 2
VIM WILD-TYPE 50 83 75
'VIM MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00473 (Fisher's exact test), Q value = 0.062

Table S12470.  Gene #1173: 'VIM MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
VIM MUTATED 8 0 0 0
VIM WILD-TYPE 170 183 101 20

Figure S3264.  Get High-res Image Gene #1173: 'VIM MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'VIM MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.195 (Fisher's exact test), Q value = 0.5

Table S12471.  Gene #1173: 'VIM MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
VIM MUTATED 1 0 4
VIM WILD-TYPE 86 80 96
'VIM MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.199 (Fisher's exact test), Q value = 0.5

Table S12472.  Gene #1173: 'VIM MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
VIM MUTATED 3 1 2
VIM WILD-TYPE 86 159 136
'VIM MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.758 (Fisher's exact test), Q value = 1

Table S12473.  Gene #1173: 'VIM MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
VIM MUTATED 4 1 1
VIM WILD-TYPE 178 132 71
'VIM MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S12474.  Gene #1173: 'VIM MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
VIM MUTATED 2 2 1 4
VIM WILD-TYPE 110 94 91 182
'VIM MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.11 (Fisher's exact test), Q value = 0.37

Table S12475.  Gene #1173: 'VIM MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
VIM MUTATED 3 0 0 2 0 1 3
VIM WILD-TYPE 57 50 49 38 63 124 96
'VIM MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.571 (Fisher's exact test), Q value = 0.88

Table S12476.  Gene #1173: 'VIM MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
VIM MUTATED 2 0 2 3
VIM WILD-TYPE 128 78 66 193
'VIM MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.316 (Fisher's exact test), Q value = 0.64

Table S12477.  Gene #1173: 'VIM MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
VIM MUTATED 2 0 1 2 0 0 1 0 1
VIM WILD-TYPE 38 62 27 78 69 48 42 28 73
'GLG1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.221 (Fisher's exact test), Q value = 0.54

Table S12478.  Gene #1174: 'GLG1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
GLG1 MUTATED 2 1 0 2
GLG1 WILD-TYPE 44 57 64 41
'GLG1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0887 (Fisher's exact test), Q value = 0.32

Table S12479.  Gene #1174: 'GLG1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
GLG1 MUTATED 3 2 0
GLG1 WILD-TYPE 48 81 77
'GLG1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.24 (Fisher's exact test), Q value = 0.56

Table S12480.  Gene #1174: 'GLG1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
GLG1 MUTATED 9 4 1 0
GLG1 WILD-TYPE 169 179 100 20
'GLG1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.559 (Fisher's exact test), Q value = 0.87

Table S12481.  Gene #1174: 'GLG1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
GLG1 MUTATED 5 2 3
GLG1 WILD-TYPE 82 78 97
'GLG1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.163 (Fisher's exact test), Q value = 0.46

Table S12482.  Gene #1174: 'GLG1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
GLG1 MUTATED 1 4 8
GLG1 WILD-TYPE 88 156 130
'GLG1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.248 (Fisher's exact test), Q value = 0.57

Table S12483.  Gene #1174: 'GLG1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
GLG1 MUTATED 7 2 4
GLG1 WILD-TYPE 175 131 68
'GLG1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.165 (Fisher's exact test), Q value = 0.46

Table S12484.  Gene #1174: 'GLG1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
GLG1 MUTATED 2 1 6 5
GLG1 WILD-TYPE 110 95 86 181
'GLG1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.024 (Fisher's exact test), Q value = 0.16

Table S12485.  Gene #1174: 'GLG1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
GLG1 MUTATED 1 0 5 0 3 1 4
GLG1 WILD-TYPE 59 50 44 40 60 124 95

Figure S3265.  Get High-res Image Gene #1174: 'GLG1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'GLG1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.541 (Fisher's exact test), Q value = 0.86

Table S12486.  Gene #1174: 'GLG1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
GLG1 MUTATED 3 4 2 4
GLG1 WILD-TYPE 127 74 66 192
'GLG1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0746 (Fisher's exact test), Q value = 0.29

Table S12487.  Gene #1174: 'GLG1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
GLG1 MUTATED 0 5 2 1 3 1 1 0 0
GLG1 WILD-TYPE 40 57 26 79 66 47 42 28 74
'GLG1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.757 (Fisher's exact test), Q value = 1

Table S12488.  Gene #1174: 'GLG1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
GLG1 MUTATED 1 1 2 0
GLG1 WILD-TYPE 32 30 25 19
'GLG1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.269 (Fisher's exact test), Q value = 0.59

Table S12489.  Gene #1174: 'GLG1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
GLG1 MUTATED 1 1 1 1
GLG1 WILD-TYPE 53 9 23 21
'CETN3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0226 (Fisher's exact test), Q value = 0.15

Table S12490.  Gene #1175: 'CETN3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
CETN3 MUTATED 6 0 0 0
CETN3 WILD-TYPE 172 183 101 20

Figure S3266.  Get High-res Image Gene #1175: 'CETN3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'CETN3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.289 (Fisher's exact test), Q value = 0.62

Table S12491.  Gene #1175: 'CETN3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
CETN3 MUTATED 3 0 3
CETN3 WILD-TYPE 84 80 97
'CETN3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00482 (Fisher's exact test), Q value = 0.063

Table S12492.  Gene #1175: 'CETN3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
CETN3 MUTATED 0 0 6
CETN3 WILD-TYPE 89 160 132

Figure S3267.  Get High-res Image Gene #1175: 'CETN3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'CETN3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.337 (Fisher's exact test), Q value = 0.66

Table S12493.  Gene #1175: 'CETN3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
CETN3 MUTATED 5 1 0
CETN3 WILD-TYPE 177 132 72
'CETN3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00383 (Fisher's exact test), Q value = 0.056

Table S12494.  Gene #1175: 'CETN3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
CETN3 MUTATED 0 2 4 0
CETN3 WILD-TYPE 112 94 88 186

Figure S3268.  Get High-res Image Gene #1175: 'CETN3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'CETN3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00129 (Fisher's exact test), Q value = 0.029

Table S12495.  Gene #1175: 'CETN3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
CETN3 MUTATED 0 1 4 0 1 0 0
CETN3 WILD-TYPE 60 49 45 40 62 125 99

Figure S3269.  Get High-res Image Gene #1175: 'CETN3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CETN3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0308 (Fisher's exact test), Q value = 0.18

Table S12496.  Gene #1175: 'CETN3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
CETN3 MUTATED 4 2 0 0
CETN3 WILD-TYPE 126 76 68 196

Figure S3270.  Get High-res Image Gene #1175: 'CETN3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'CETN3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0867 (Fisher's exact test), Q value = 0.32

Table S12497.  Gene #1175: 'CETN3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
CETN3 MUTATED 0 3 0 0 1 0 2 0 0
CETN3 WILD-TYPE 40 59 28 80 68 48 41 28 74
'SFRS15 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0146 (Fisher's exact test), Q value = 0.12

Table S12498.  Gene #1176: 'SFRS15 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
SFRS15 MUTATED 5 0 1 3
SFRS15 WILD-TYPE 41 58 63 40

Figure S3271.  Get High-res Image Gene #1176: 'SFRS15 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'SFRS15 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0957 (Fisher's exact test), Q value = 0.34

Table S12499.  Gene #1176: 'SFRS15 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
SFRS15 MUTATED 5 2 2
SFRS15 WILD-TYPE 46 81 75
'SFRS15 MUTATION STATUS' versus 'CN_CNMF'

P value = 3e-05 (Fisher's exact test), Q value = 0.0022

Table S12500.  Gene #1176: 'SFRS15 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
SFRS15 MUTATED 18 2 0 0
SFRS15 WILD-TYPE 160 181 101 20

Figure S3272.  Get High-res Image Gene #1176: 'SFRS15 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'SFRS15 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0241 (Fisher's exact test), Q value = 0.16

Table S12501.  Gene #1176: 'SFRS15 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
SFRS15 MUTATED 7 0 5
SFRS15 WILD-TYPE 80 80 95

Figure S3273.  Get High-res Image Gene #1176: 'SFRS15 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'SFRS15 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0543 (Fisher's exact test), Q value = 0.25

Table S12502.  Gene #1176: 'SFRS15 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
SFRS15 MUTATED 0 9 5
SFRS15 WILD-TYPE 89 151 133
'SFRS15 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.337 (Fisher's exact test), Q value = 0.66

Table S12503.  Gene #1176: 'SFRS15 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
SFRS15 MUTATED 4 7 3
SFRS15 WILD-TYPE 178 126 69
'SFRS15 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.203 (Fisher's exact test), Q value = 0.51

Table S12504.  Gene #1176: 'SFRS15 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
SFRS15 MUTATED 1 5 4 10
SFRS15 WILD-TYPE 111 91 88 176
'SFRS15 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0113 (Fisher's exact test), Q value = 0.1

Table S12505.  Gene #1176: 'SFRS15 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
SFRS15 MUTATED 1 2 6 0 1 2 8
SFRS15 WILD-TYPE 59 48 43 40 62 123 91

Figure S3274.  Get High-res Image Gene #1176: 'SFRS15 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'SFRS15 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.383 (Fisher's exact test), Q value = 0.71

Table S12506.  Gene #1176: 'SFRS15 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
SFRS15 MUTATED 4 3 1 12
SFRS15 WILD-TYPE 126 75 67 184
'SFRS15 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.115 (Fisher's exact test), Q value = 0.38

Table S12507.  Gene #1176: 'SFRS15 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
SFRS15 MUTATED 0 3 3 3 7 1 0 1 2
SFRS15 WILD-TYPE 40 59 25 77 62 47 43 27 72
'SFRS15 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.024 (Fisher's exact test), Q value = 0.16

Table S12508.  Gene #1176: 'SFRS15 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
SFRS15 MUTATED 1 0 0 3
SFRS15 WILD-TYPE 32 31 27 16

Figure S3275.  Get High-res Image Gene #1176: 'SFRS15 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'SFRS15 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.13 (Fisher's exact test), Q value = 0.4

Table S12509.  Gene #1176: 'SFRS15 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
SFRS15 MUTATED 1 0 3 0
SFRS15 WILD-TYPE 53 10 21 22
'ADAMTSL3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00279 (Fisher's exact test), Q value = 0.047

Table S12510.  Gene #1177: 'ADAMTSL3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ADAMTSL3 MUTATED 8 1 1 4
ADAMTSL3 WILD-TYPE 38 57 63 39

Figure S3276.  Get High-res Image Gene #1177: 'ADAMTSL3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'ADAMTSL3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.016 (Fisher's exact test), Q value = 0.13

Table S12511.  Gene #1177: 'ADAMTSL3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ADAMTSL3 MUTATED 8 4 2
ADAMTSL3 WILD-TYPE 43 79 75

Figure S3277.  Get High-res Image Gene #1177: 'ADAMTSL3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'ADAMTSL3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0083 (Fisher's exact test), Q value = 0.085

Table S12512.  Gene #1177: 'ADAMTSL3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ADAMTSL3 MUTATED 25 8 12 1
ADAMTSL3 WILD-TYPE 153 175 89 19

Figure S3278.  Get High-res Image Gene #1177: 'ADAMTSL3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ADAMTSL3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0166 (Fisher's exact test), Q value = 0.13

Table S12513.  Gene #1177: 'ADAMTSL3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ADAMTSL3 MUTATED 12 3 16
ADAMTSL3 WILD-TYPE 75 77 84

Figure S3279.  Get High-res Image Gene #1177: 'ADAMTSL3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'ADAMTSL3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.486 (Fisher's exact test), Q value = 0.81

Table S12514.  Gene #1177: 'ADAMTSL3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ADAMTSL3 MUTATED 7 12 16
ADAMTSL3 WILD-TYPE 82 148 122
'ADAMTSL3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.155 (Fisher's exact test), Q value = 0.44

Table S12515.  Gene #1177: 'ADAMTSL3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ADAMTSL3 MUTATED 22 8 5
ADAMTSL3 WILD-TYPE 160 125 67
'ADAMTSL3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.064 (Fisher's exact test), Q value = 0.27

Table S12516.  Gene #1177: 'ADAMTSL3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ADAMTSL3 MUTATED 6 13 13 14
ADAMTSL3 WILD-TYPE 106 83 79 172
'ADAMTSL3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 3e-05 (Fisher's exact test), Q value = 0.0022

Table S12517.  Gene #1177: 'ADAMTSL3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ADAMTSL3 MUTATED 2 8 14 3 6 3 10
ADAMTSL3 WILD-TYPE 58 42 35 37 57 122 89

Figure S3280.  Get High-res Image Gene #1177: 'ADAMTSL3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ADAMTSL3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.048 (Fisher's exact test), Q value = 0.23

Table S12518.  Gene #1177: 'ADAMTSL3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ADAMTSL3 MUTATED 18 10 2 16
ADAMTSL3 WILD-TYPE 112 68 66 180

Figure S3281.  Get High-res Image Gene #1177: 'ADAMTSL3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'ADAMTSL3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00491 (Fisher's exact test), Q value = 0.063

Table S12519.  Gene #1177: 'ADAMTSL3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ADAMTSL3 MUTATED 4 12 4 6 13 1 2 1 3
ADAMTSL3 WILD-TYPE 36 50 24 74 56 47 41 27 71

Figure S3282.  Get High-res Image Gene #1177: 'ADAMTSL3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'ADAMTSL3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.151 (Fisher's exact test), Q value = 0.44

Table S12520.  Gene #1177: 'ADAMTSL3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
ADAMTSL3 MUTATED 4 3 1 5
ADAMTSL3 WILD-TYPE 29 28 26 14
'ADAMTSL3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.257 (Fisher's exact test), Q value = 0.58

Table S12521.  Gene #1177: 'ADAMTSL3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
ADAMTSL3 MUTATED 10 0 2 1
ADAMTSL3 WILD-TYPE 44 10 22 21
'CASP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0526 (Fisher's exact test), Q value = 0.25

Table S12522.  Gene #1178: 'CASP1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
CASP1 MUTATED 4 0 1 1
CASP1 WILD-TYPE 174 183 100 19
'CASP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0372 (Fisher's exact test), Q value = 0.2

Table S12523.  Gene #1178: 'CASP1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
CASP1 MUTATED 0 0 4
CASP1 WILD-TYPE 87 80 96

Figure S3283.  Get High-res Image Gene #1178: 'CASP1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'CASP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.797 (Fisher's exact test), Q value = 1

Table S12524.  Gene #1178: 'CASP1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
CASP1 MUTATED 0 2 1
CASP1 WILD-TYPE 89 158 137
'CASP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.772 (Fisher's exact test), Q value = 1

Table S12525.  Gene #1178: 'CASP1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
CASP1 MUTATED 1 1 1
CASP1 WILD-TYPE 181 132 71
'CASP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.35 (Fisher's exact test), Q value = 0.68

Table S12526.  Gene #1178: 'CASP1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
CASP1 MUTATED 0 2 2 2
CASP1 WILD-TYPE 112 94 90 184
'CASP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00301 (Fisher's exact test), Q value = 0.049

Table S12527.  Gene #1178: 'CASP1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
CASP1 MUTATED 0 0 4 0 0 0 2
CASP1 WILD-TYPE 60 50 45 40 63 125 97

Figure S3284.  Get High-res Image Gene #1178: 'CASP1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CASP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.506 (Fisher's exact test), Q value = 0.83

Table S12528.  Gene #1178: 'CASP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
CASP1 MUTATED 3 0 0 3
CASP1 WILD-TYPE 127 78 68 193
'CASP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0074 (Fisher's exact test), Q value = 0.08

Table S12529.  Gene #1178: 'CASP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
CASP1 MUTATED 0 0 0 0 5 0 1 0 0
CASP1 WILD-TYPE 40 62 28 80 64 48 42 28 74

Figure S3285.  Get High-res Image Gene #1178: 'CASP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'B4GALT6 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0733 (Fisher's exact test), Q value = 0.29

Table S12530.  Gene #1179: 'B4GALT6 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
B4GALT6 MUTATED 2 0 0 2
B4GALT6 WILD-TYPE 44 58 64 41
'B4GALT6 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0601 (Fisher's exact test), Q value = 0.27

Table S12531.  Gene #1179: 'B4GALT6 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
B4GALT6 MUTATED 3 1 0
B4GALT6 WILD-TYPE 48 82 77
'B4GALT6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00547 (Fisher's exact test), Q value = 0.067

Table S12532.  Gene #1179: 'B4GALT6 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
B4GALT6 MUTATED 8 0 1 1
B4GALT6 WILD-TYPE 170 183 100 19

Figure S3286.  Get High-res Image Gene #1179: 'B4GALT6 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'B4GALT6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0762 (Fisher's exact test), Q value = 0.3

Table S12533.  Gene #1179: 'B4GALT6 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
B4GALT6 MUTATED 4 0 1
B4GALT6 WILD-TYPE 83 80 99
'B4GALT6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.819 (Fisher's exact test), Q value = 1

Table S12534.  Gene #1179: 'B4GALT6 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
B4GALT6 MUTATED 2 4 2
B4GALT6 WILD-TYPE 87 156 136
'B4GALT6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.512 (Fisher's exact test), Q value = 0.83

Table S12535.  Gene #1179: 'B4GALT6 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
B4GALT6 MUTATED 4 4 0
B4GALT6 WILD-TYPE 178 129 72
'B4GALT6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.265 (Fisher's exact test), Q value = 0.59

Table S12536.  Gene #1179: 'B4GALT6 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
B4GALT6 MUTATED 0 2 3 5
B4GALT6 WILD-TYPE 112 94 89 181
'B4GALT6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0692 (Fisher's exact test), Q value = 0.28

Table S12537.  Gene #1179: 'B4GALT6 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
B4GALT6 MUTATED 0 2 1 1 1 0 5
B4GALT6 WILD-TYPE 60 48 48 39 62 125 94
'B4GALT6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.221 (Fisher's exact test), Q value = 0.53

Table S12538.  Gene #1179: 'B4GALT6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
B4GALT6 MUTATED 1 3 0 6
B4GALT6 WILD-TYPE 129 75 68 190
'B4GALT6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0462 (Fisher's exact test), Q value = 0.23

Table S12539.  Gene #1179: 'B4GALT6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
B4GALT6 MUTATED 0 4 1 0 4 0 0 0 1
B4GALT6 WILD-TYPE 40 58 27 80 65 48 43 28 73

Figure S3287.  Get High-res Image Gene #1179: 'B4GALT6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'RAD21 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.172 (Fisher's exact test), Q value = 0.47

Table S12540.  Gene #1180: 'RAD21 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
RAD21 MUTATED 1 0 2 3
RAD21 WILD-TYPE 45 58 62 40
'RAD21 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0216 (Fisher's exact test), Q value = 0.15

Table S12541.  Gene #1180: 'RAD21 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
RAD21 MUTATED 4 2 0
RAD21 WILD-TYPE 47 81 77

Figure S3288.  Get High-res Image Gene #1180: 'RAD21 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'RAD21 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00802 (Fisher's exact test), Q value = 0.084

Table S12542.  Gene #1180: 'RAD21 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
RAD21 MUTATED 12 1 4 0
RAD21 WILD-TYPE 166 182 97 20

Figure S3289.  Get High-res Image Gene #1180: 'RAD21 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'RAD21 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.29 (Fisher's exact test), Q value = 0.62

Table S12543.  Gene #1180: 'RAD21 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
RAD21 MUTATED 4 1 6
RAD21 WILD-TYPE 83 79 94
'RAD21 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.839 (Fisher's exact test), Q value = 1

Table S12544.  Gene #1180: 'RAD21 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
RAD21 MUTATED 4 5 6
RAD21 WILD-TYPE 85 155 132
'RAD21 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.833 (Fisher's exact test), Q value = 1

Table S12545.  Gene #1180: 'RAD21 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
RAD21 MUTATED 6 6 3
RAD21 WILD-TYPE 176 127 69
'RAD21 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.78 (Fisher's exact test), Q value = 1

Table S12546.  Gene #1180: 'RAD21 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
RAD21 MUTATED 3 5 3 6
RAD21 WILD-TYPE 109 91 89 180
'RAD21 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.177 (Fisher's exact test), Q value = 0.48

Table S12547.  Gene #1180: 'RAD21 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
RAD21 MUTATED 1 4 4 1 1 2 4
RAD21 WILD-TYPE 59 46 45 39 62 123 95
'RAD21 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.576 (Fisher's exact test), Q value = 0.88

Table S12548.  Gene #1180: 'RAD21 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
RAD21 MUTATED 5 4 1 5
RAD21 WILD-TYPE 125 74 67 191
'RAD21 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.559 (Fisher's exact test), Q value = 0.87

Table S12549.  Gene #1180: 'RAD21 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
RAD21 MUTATED 2 3 0 2 5 1 0 0 2
RAD21 WILD-TYPE 38 59 28 78 64 47 43 28 72
'RAD21 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.391 (Fisher's exact test), Q value = 0.72

Table S12550.  Gene #1180: 'RAD21 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
RAD21 MUTATED 2 1 0 2
RAD21 WILD-TYPE 31 30 27 17
'RAD21 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.756 (Fisher's exact test), Q value = 1

Table S12551.  Gene #1180: 'RAD21 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
RAD21 MUTATED 4 0 1 0
RAD21 WILD-TYPE 50 10 23 22
'HUS1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.59 (Fisher's exact test), Q value = 0.89

Table S12552.  Gene #1181: 'HUS1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
HUS1 MUTATED 5 2 1 0
HUS1 WILD-TYPE 173 181 100 20
'HUS1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.714 (Fisher's exact test), Q value = 0.98

Table S12553.  Gene #1181: 'HUS1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
HUS1 MUTATED 3 1 3
HUS1 WILD-TYPE 84 79 97
'HUS1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.532 (Fisher's exact test), Q value = 0.85

Table S12554.  Gene #1181: 'HUS1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
HUS1 MUTATED 1 5 2
HUS1 WILD-TYPE 88 155 136
'HUS1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.641 (Fisher's exact test), Q value = 0.93

Table S12555.  Gene #1181: 'HUS1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
HUS1 MUTATED 3 4 1
HUS1 WILD-TYPE 179 129 71
'HUS1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.542 (Fisher's exact test), Q value = 0.86

Table S12556.  Gene #1181: 'HUS1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
HUS1 MUTATED 1 2 3 2
HUS1 WILD-TYPE 111 94 89 184
'HUS1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.201 (Fisher's exact test), Q value = 0.51

Table S12557.  Gene #1181: 'HUS1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
HUS1 MUTATED 1 0 2 1 2 0 2
HUS1 WILD-TYPE 59 50 47 39 61 125 97
'HUS1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.686 (Fisher's exact test), Q value = 0.96

Table S12558.  Gene #1181: 'HUS1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
HUS1 MUTATED 3 2 1 2
HUS1 WILD-TYPE 127 76 67 194
'HUS1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.881 (Fisher's exact test), Q value = 1

Table S12559.  Gene #1181: 'HUS1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
HUS1 MUTATED 1 2 1 2 1 0 0 0 1
HUS1 WILD-TYPE 39 60 27 78 68 48 43 28 73
'HUS1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0584 (Fisher's exact test), Q value = 0.26

Table S12560.  Gene #1181: 'HUS1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
HUS1 MUTATED 0 1 1 3
HUS1 WILD-TYPE 33 30 26 16
'HUS1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.383 (Fisher's exact test), Q value = 0.71

Table S12561.  Gene #1181: 'HUS1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
HUS1 MUTATED 2 1 2 0
HUS1 WILD-TYPE 52 9 22 22
'PTPN14 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00716 (Fisher's exact test), Q value = 0.078

Table S12562.  Gene #1182: 'PTPN14 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
PTPN14 MUTATED 4 0 0 2
PTPN14 WILD-TYPE 42 58 64 41

Figure S3290.  Get High-res Image Gene #1182: 'PTPN14 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'PTPN14 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.072 (Fisher's exact test), Q value = 0.29

Table S12563.  Gene #1182: 'PTPN14 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
PTPN14 MUTATED 4 1 1
PTPN14 WILD-TYPE 47 82 76
'PTPN14 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00142 (Fisher's exact test), Q value = 0.031

Table S12564.  Gene #1182: 'PTPN14 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
PTPN14 MUTATED 16 2 2 0
PTPN14 WILD-TYPE 162 181 99 20

Figure S3291.  Get High-res Image Gene #1182: 'PTPN14 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'PTPN14 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.402 (Fisher's exact test), Q value = 0.73

Table S12565.  Gene #1182: 'PTPN14 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
PTPN14 MUTATED 5 2 7
PTPN14 WILD-TYPE 82 78 93
'PTPN14 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.116 (Fisher's exact test), Q value = 0.38

Table S12566.  Gene #1182: 'PTPN14 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
PTPN14 MUTATED 2 6 11
PTPN14 WILD-TYPE 87 154 127
'PTPN14 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.741 (Fisher's exact test), Q value = 1

Table S12567.  Gene #1182: 'PTPN14 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
PTPN14 MUTATED 10 7 2
PTPN14 WILD-TYPE 172 126 70
'PTPN14 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.252 (Fisher's exact test), Q value = 0.58

Table S12568.  Gene #1182: 'PTPN14 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
PTPN14 MUTATED 2 6 6 7
PTPN14 WILD-TYPE 110 90 86 179
'PTPN14 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0174 (Fisher's exact test), Q value = 0.13

Table S12569.  Gene #1182: 'PTPN14 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
PTPN14 MUTATED 3 2 7 1 2 1 5
PTPN14 WILD-TYPE 57 48 42 39 61 124 94

Figure S3292.  Get High-res Image Gene #1182: 'PTPN14 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'PTPN14 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.188 (Fisher's exact test), Q value = 0.49

Table S12570.  Gene #1182: 'PTPN14 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
PTPN14 MUTATED 6 5 0 10
PTPN14 WILD-TYPE 124 73 68 186
'PTPN14 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0316 (Fisher's exact test), Q value = 0.18

Table S12571.  Gene #1182: 'PTPN14 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
PTPN14 MUTATED 3 5 0 3 8 1 0 0 1
PTPN14 WILD-TYPE 37 57 28 77 61 47 43 28 73

Figure S3293.  Get High-res Image Gene #1182: 'PTPN14 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'PTPN14 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 4e-04 (Fisher's exact test), Q value = 0.013

Table S12572.  Gene #1182: 'PTPN14 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
PTPN14 MUTATED 1 0 1 6
PTPN14 WILD-TYPE 32 31 26 13

Figure S3294.  Get High-res Image Gene #1182: 'PTPN14 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'PTPN14 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S12573.  Gene #1182: 'PTPN14 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
PTPN14 MUTATED 4 0 2 2
PTPN14 WILD-TYPE 50 10 22 20
'FZD6 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00403 (Fisher's exact test), Q value = 0.058

Table S12574.  Gene #1183: 'FZD6 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
FZD6 MUTATED 1 0 0 4
FZD6 WILD-TYPE 45 58 64 39

Figure S3295.  Get High-res Image Gene #1183: 'FZD6 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'FZD6 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.638 (Fisher's exact test), Q value = 0.93

Table S12575.  Gene #1183: 'FZD6 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
FZD6 MUTATED 2 1 2
FZD6 WILD-TYPE 49 82 75
'FZD6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.012 (Fisher's exact test), Q value = 0.11

Table S12576.  Gene #1183: 'FZD6 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
FZD6 MUTATED 12 2 1 0
FZD6 WILD-TYPE 166 181 100 20

Figure S3296.  Get High-res Image Gene #1183: 'FZD6 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'FZD6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.851 (Fisher's exact test), Q value = 1

Table S12577.  Gene #1183: 'FZD6 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
FZD6 MUTATED 4 2 4
FZD6 WILD-TYPE 83 78 96
'FZD6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.318 (Fisher's exact test), Q value = 0.65

Table S12578.  Gene #1183: 'FZD6 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
FZD6 MUTATED 1 6 7
FZD6 WILD-TYPE 88 154 131
'FZD6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.636 (Fisher's exact test), Q value = 0.93

Table S12579.  Gene #1183: 'FZD6 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
FZD6 MUTATED 8 5 1
FZD6 WILD-TYPE 174 128 71
'FZD6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0573 (Fisher's exact test), Q value = 0.26

Table S12580.  Gene #1183: 'FZD6 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
FZD6 MUTATED 1 7 3 4
FZD6 WILD-TYPE 111 89 89 182
'FZD6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0143 (Fisher's exact test), Q value = 0.12

Table S12581.  Gene #1183: 'FZD6 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
FZD6 MUTATED 2 1 5 2 1 0 4
FZD6 WILD-TYPE 58 49 44 38 62 125 95

Figure S3297.  Get High-res Image Gene #1183: 'FZD6 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'FZD6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.558 (Fisher's exact test), Q value = 0.87

Table S12582.  Gene #1183: 'FZD6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
FZD6 MUTATED 6 1 1 5
FZD6 WILD-TYPE 124 77 67 191
'FZD6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00198 (Fisher's exact test), Q value = 0.037

Table S12583.  Gene #1183: 'FZD6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
FZD6 MUTATED 5 1 1 0 5 0 0 0 1
FZD6 WILD-TYPE 35 61 27 80 64 48 43 28 73

Figure S3298.  Get High-res Image Gene #1183: 'FZD6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'FZD6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0131 (Fisher's exact test), Q value = 0.11

Table S12584.  Gene #1183: 'FZD6 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
FZD6 MUTATED 0 1 0 3
FZD6 WILD-TYPE 33 30 27 16

Figure S3299.  Get High-res Image Gene #1183: 'FZD6 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'FZD6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.672 (Fisher's exact test), Q value = 0.95

Table S12585.  Gene #1183: 'FZD6 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
FZD6 MUTATED 2 0 2 0
FZD6 WILD-TYPE 52 10 22 22
'C6ORF222 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0644 (Fisher's exact test), Q value = 0.28

Table S12586.  Gene #1184: 'C6ORF222 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
C6ORF222 MUTATED 1 0 0 2
C6ORF222 WILD-TYPE 45 58 64 41
'C6ORF222 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.252 (Fisher's exact test), Q value = 0.58

Table S12587.  Gene #1184: 'C6ORF222 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
C6ORF222 MUTATED 2 1 0
C6ORF222 WILD-TYPE 49 82 77
'C6ORF222 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0223 (Fisher's exact test), Q value = 0.15

Table S12588.  Gene #1184: 'C6ORF222 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
C6ORF222 MUTATED 6 0 0 0
C6ORF222 WILD-TYPE 172 183 101 20

Figure S3300.  Get High-res Image Gene #1184: 'C6ORF222 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'C6ORF222 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.113 (Fisher's exact test), Q value = 0.37

Table S12589.  Gene #1184: 'C6ORF222 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
C6ORF222 MUTATED 0 0 3
C6ORF222 WILD-TYPE 87 80 97
'C6ORF222 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.376 (Fisher's exact test), Q value = 0.71

Table S12590.  Gene #1184: 'C6ORF222 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
C6ORF222 MUTATED 0 2 3
C6ORF222 WILD-TYPE 89 158 135
'C6ORF222 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S12591.  Gene #1184: 'C6ORF222 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
C6ORF222 MUTATED 2 2 1
C6ORF222 WILD-TYPE 180 131 71
'C6ORF222 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.133 (Fisher's exact test), Q value = 0.41

Table S12592.  Gene #1184: 'C6ORF222 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
C6ORF222 MUTATED 0 3 0 3
C6ORF222 WILD-TYPE 112 93 92 183
'C6ORF222 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0159 (Fisher's exact test), Q value = 0.13

Table S12593.  Gene #1184: 'C6ORF222 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
C6ORF222 MUTATED 0 0 3 0 0 0 3
C6ORF222 WILD-TYPE 60 50 46 40 63 125 96

Figure S3301.  Get High-res Image Gene #1184: 'C6ORF222 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'C6ORF222 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.689 (Fisher's exact test), Q value = 0.97

Table S12594.  Gene #1184: 'C6ORF222 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
C6ORF222 MUTATED 2 0 0 3
C6ORF222 WILD-TYPE 128 78 68 193
'C6ORF222 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0656 (Fisher's exact test), Q value = 0.28

Table S12595.  Gene #1184: 'C6ORF222 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
C6ORF222 MUTATED 1 0 1 0 3 0 0 0 0
C6ORF222 WILD-TYPE 39 62 27 80 66 48 43 28 74
'ANKRD26 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00896 (Fisher's exact test), Q value = 0.088

Table S12596.  Gene #1185: 'ANKRD26 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ANKRD26 MUTATED 3 0 0 3
ANKRD26 WILD-TYPE 43 58 64 40

Figure S3302.  Get High-res Image Gene #1185: 'ANKRD26 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'ANKRD26 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0722 (Fisher's exact test), Q value = 0.29

Table S12597.  Gene #1185: 'ANKRD26 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ANKRD26 MUTATED 4 1 1
ANKRD26 WILD-TYPE 47 82 76
'ANKRD26 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.031 (Fisher's exact test), Q value = 0.18

Table S12598.  Gene #1185: 'ANKRD26 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ANKRD26 MUTATED 14 5 2 2
ANKRD26 WILD-TYPE 164 178 99 18

Figure S3303.  Get High-res Image Gene #1185: 'ANKRD26 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ANKRD26 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0759 (Fisher's exact test), Q value = 0.3

Table S12599.  Gene #1185: 'ANKRD26 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ANKRD26 MUTATED 5 2 11
ANKRD26 WILD-TYPE 82 78 89
'ANKRD26 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.483 (Fisher's exact test), Q value = 0.81

Table S12600.  Gene #1185: 'ANKRD26 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ANKRD26 MUTATED 3 6 9
ANKRD26 WILD-TYPE 86 154 129
'ANKRD26 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S12601.  Gene #1185: 'ANKRD26 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ANKRD26 MUTATED 9 6 3
ANKRD26 WILD-TYPE 173 127 69
'ANKRD26 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0114 (Fisher's exact test), Q value = 0.1

Table S12602.  Gene #1185: 'ANKRD26 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ANKRD26 MUTATED 2 11 4 6
ANKRD26 WILD-TYPE 110 85 88 180

Figure S3304.  Get High-res Image Gene #1185: 'ANKRD26 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'ANKRD26 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00265 (Fisher's exact test), Q value = 0.045

Table S12603.  Gene #1185: 'ANKRD26 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ANKRD26 MUTATED 2 6 5 2 3 0 5
ANKRD26 WILD-TYPE 58 44 44 38 60 125 94

Figure S3305.  Get High-res Image Gene #1185: 'ANKRD26 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ANKRD26 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.831 (Fisher's exact test), Q value = 1

Table S12604.  Gene #1185: 'ANKRD26 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ANKRD26 MUTATED 8 3 3 8
ANKRD26 WILD-TYPE 122 75 65 188
'ANKRD26 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.112 (Fisher's exact test), Q value = 0.37

Table S12605.  Gene #1185: 'ANKRD26 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ANKRD26 MUTATED 1 4 3 2 7 1 3 0 1
ANKRD26 WILD-TYPE 39 58 25 78 62 47 40 28 73
'ANKRD26 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.866 (Fisher's exact test), Q value = 1

Table S12606.  Gene #1185: 'ANKRD26 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
ANKRD26 MUTATED 1 1 2 1
ANKRD26 WILD-TYPE 32 30 25 18
'ANKRD26 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.19 (Fisher's exact test), Q value = 0.49

Table S12607.  Gene #1185: 'ANKRD26 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
ANKRD26 MUTATED 2 0 3 0
ANKRD26 WILD-TYPE 52 10 21 22
'TDRD7 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00355 (Fisher's exact test), Q value = 0.054

Table S12608.  Gene #1186: 'TDRD7 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
TDRD7 MUTATED 1 0 0 4
TDRD7 WILD-TYPE 45 58 64 39

Figure S3306.  Get High-res Image Gene #1186: 'TDRD7 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'TDRD7 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.638 (Fisher's exact test), Q value = 0.93

Table S12609.  Gene #1186: 'TDRD7 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
TDRD7 MUTATED 2 1 2
TDRD7 WILD-TYPE 49 82 75
'TDRD7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0131 (Fisher's exact test), Q value = 0.11

Table S12610.  Gene #1186: 'TDRD7 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
TDRD7 MUTATED 12 4 0 0
TDRD7 WILD-TYPE 166 179 101 20

Figure S3307.  Get High-res Image Gene #1186: 'TDRD7 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'TDRD7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.74 (Fisher's exact test), Q value = 1

Table S12611.  Gene #1186: 'TDRD7 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
TDRD7 MUTATED 4 2 5
TDRD7 WILD-TYPE 83 78 95
'TDRD7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.486 (Fisher's exact test), Q value = 0.81

Table S12612.  Gene #1186: 'TDRD7 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
TDRD7 MUTATED 3 5 8
TDRD7 WILD-TYPE 86 155 130
'TDRD7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.31 (Fisher's exact test), Q value = 0.64

Table S12613.  Gene #1186: 'TDRD7 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
TDRD7 MUTATED 5 8 3
TDRD7 WILD-TYPE 177 125 69
'TDRD7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.317 (Fisher's exact test), Q value = 0.65

Table S12614.  Gene #1186: 'TDRD7 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
TDRD7 MUTATED 4 6 2 4
TDRD7 WILD-TYPE 108 90 90 182
'TDRD7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0279 (Fisher's exact test), Q value = 0.17

Table S12615.  Gene #1186: 'TDRD7 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
TDRD7 MUTATED 3 2 4 0 3 0 4
TDRD7 WILD-TYPE 57 48 45 40 60 125 95

Figure S3308.  Get High-res Image Gene #1186: 'TDRD7 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'TDRD7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.341 (Fisher's exact test), Q value = 0.67

Table S12616.  Gene #1186: 'TDRD7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
TDRD7 MUTATED 6 3 0 6
TDRD7 WILD-TYPE 124 75 68 190
'TDRD7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00268 (Fisher's exact test), Q value = 0.045

Table S12617.  Gene #1186: 'TDRD7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
TDRD7 MUTATED 4 2 3 0 5 0 0 0 1
TDRD7 WILD-TYPE 36 60 25 80 64 48 43 28 73

Figure S3309.  Get High-res Image Gene #1186: 'TDRD7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'MFSD6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.56 (Fisher's exact test), Q value = 0.87

Table S12618.  Gene #1187: 'MFSD6 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
MFSD6 MUTATED 3 3 1 1
MFSD6 WILD-TYPE 175 180 100 19
'MFSD6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.392 (Fisher's exact test), Q value = 0.72

Table S12619.  Gene #1187: 'MFSD6 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
MFSD6 MUTATED 3 3 1
MFSD6 WILD-TYPE 84 77 99
'MFSD6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0285 (Fisher's exact test), Q value = 0.17

Table S12620.  Gene #1187: 'MFSD6 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
MFSD6 MUTATED 1 0 5
MFSD6 WILD-TYPE 88 160 133

Figure S3310.  Get High-res Image Gene #1187: 'MFSD6 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'MFSD6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.139 (Fisher's exact test), Q value = 0.41

Table S12621.  Gene #1187: 'MFSD6 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
MFSD6 MUTATED 5 0 1
MFSD6 WILD-TYPE 177 133 71
'MFSD6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.37 (Fisher's exact test), Q value = 0.7

Table S12622.  Gene #1187: 'MFSD6 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
MFSD6 MUTATED 3 2 2 1
MFSD6 WILD-TYPE 109 94 90 185
'MFSD6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0672 (Fisher's exact test), Q value = 0.28

Table S12623.  Gene #1187: 'MFSD6 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
MFSD6 MUTATED 2 0 2 2 1 0 1
MFSD6 WILD-TYPE 58 50 47 38 62 125 98
'MFSD6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.125 (Fisher's exact test), Q value = 0.39

Table S12624.  Gene #1187: 'MFSD6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
MFSD6 MUTATED 5 1 1 1
MFSD6 WILD-TYPE 125 77 67 195
'MFSD6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.422 (Fisher's exact test), Q value = 0.75

Table S12625.  Gene #1187: 'MFSD6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
MFSD6 MUTATED 1 2 1 1 0 1 1 1 0
MFSD6 WILD-TYPE 39 60 27 79 69 47 42 27 74
'MFSD6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.301 (Fisher's exact test), Q value = 0.63

Table S12626.  Gene #1187: 'MFSD6 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
MFSD6 MUTATED 2 0 1 2
MFSD6 WILD-TYPE 31 31 26 17
'MFSD6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.892 (Fisher's exact test), Q value = 1

Table S12627.  Gene #1187: 'MFSD6 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
MFSD6 MUTATED 2 0 2 1
MFSD6 WILD-TYPE 52 10 22 21
'KIAA1632 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00053 (Fisher's exact test), Q value = 0.016

Table S12628.  Gene #1188: 'KIAA1632 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
KIAA1632 MUTATED 4 1 0 7
KIAA1632 WILD-TYPE 42 57 64 36

Figure S3311.  Get High-res Image Gene #1188: 'KIAA1632 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'KIAA1632 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.174 (Fisher's exact test), Q value = 0.47

Table S12629.  Gene #1188: 'KIAA1632 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
KIAA1632 MUTATED 5 2 5
KIAA1632 WILD-TYPE 46 81 72
'KIAA1632 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0479 (Fisher's exact test), Q value = 0.23

Table S12630.  Gene #1188: 'KIAA1632 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
KIAA1632 MUTATED 18 7 4 0
KIAA1632 WILD-TYPE 160 176 97 20

Figure S3312.  Get High-res Image Gene #1188: 'KIAA1632 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'KIAA1632 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.751 (Fisher's exact test), Q value = 1

Table S12631.  Gene #1188: 'KIAA1632 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
KIAA1632 MUTATED 7 4 7
KIAA1632 WILD-TYPE 80 76 93
'KIAA1632 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.69 (Fisher's exact test), Q value = 0.97

Table S12632.  Gene #1188: 'KIAA1632 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
KIAA1632 MUTATED 6 8 10
KIAA1632 WILD-TYPE 83 152 128
'KIAA1632 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.925 (Fisher's exact test), Q value = 1

Table S12633.  Gene #1188: 'KIAA1632 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
KIAA1632 MUTATED 11 8 5
KIAA1632 WILD-TYPE 171 125 67
'KIAA1632 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.198 (Fisher's exact test), Q value = 0.5

Table S12634.  Gene #1188: 'KIAA1632 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
KIAA1632 MUTATED 5 10 3 13
KIAA1632 WILD-TYPE 107 86 89 173
'KIAA1632 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0787 (Fisher's exact test), Q value = 0.3

Table S12635.  Gene #1188: 'KIAA1632 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
KIAA1632 MUTATED 3 6 3 4 2 3 10
KIAA1632 WILD-TYPE 57 44 46 36 61 122 89
'KIAA1632 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.984 (Fisher's exact test), Q value = 1

Table S12636.  Gene #1188: 'KIAA1632 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
KIAA1632 MUTATED 9 4 4 13
KIAA1632 WILD-TYPE 121 74 64 183
'KIAA1632 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.509 (Fisher's exact test), Q value = 0.83

Table S12637.  Gene #1188: 'KIAA1632 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
KIAA1632 MUTATED 4 3 3 4 7 2 4 1 2
KIAA1632 WILD-TYPE 36 59 25 76 62 46 39 27 72
'KIAA1632 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.103 (Fisher's exact test), Q value = 0.36

Table S12638.  Gene #1188: 'KIAA1632 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
KIAA1632 MUTATED 2 0 3 3
KIAA1632 WILD-TYPE 31 31 24 16
'KIAA1632 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.856 (Fisher's exact test), Q value = 1

Table S12639.  Gene #1188: 'KIAA1632 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
KIAA1632 MUTATED 4 1 1 2
KIAA1632 WILD-TYPE 50 9 23 20
'ADK MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0976 (Fisher's exact test), Q value = 0.34

Table S12640.  Gene #1189: 'ADK MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ADK MUTATED 5 0 2 0
ADK WILD-TYPE 173 183 99 20
'ADK MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.253 (Fisher's exact test), Q value = 0.58

Table S12641.  Gene #1189: 'ADK MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ADK MUTATED 2 0 4
ADK WILD-TYPE 85 80 96
'ADK MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S12642.  Gene #1189: 'ADK MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ADK MUTATED 1 3 3
ADK WILD-TYPE 88 157 135
'ADK MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.684 (Fisher's exact test), Q value = 0.96

Table S12643.  Gene #1189: 'ADK MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ADK MUTATED 4 3 0
ADK WILD-TYPE 178 130 72
'ADK MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0101 (Fisher's exact test), Q value = 0.096

Table S12644.  Gene #1189: 'ADK MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ADK MUTATED 0 5 1 1
ADK WILD-TYPE 112 91 91 185

Figure S3313.  Get High-res Image Gene #1189: 'ADK MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'ADK MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0252 (Fisher's exact test), Q value = 0.16

Table S12645.  Gene #1189: 'ADK MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ADK MUTATED 0 2 3 0 1 0 1
ADK WILD-TYPE 60 48 46 40 62 125 98

Figure S3314.  Get High-res Image Gene #1189: 'ADK MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ADK MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.321 (Fisher's exact test), Q value = 0.65

Table S12646.  Gene #1189: 'ADK MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ADK MUTATED 4 0 0 3
ADK WILD-TYPE 126 78 68 193
'ADK MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.107 (Fisher's exact test), Q value = 0.36

Table S12647.  Gene #1189: 'ADK MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ADK MUTATED 3 1 1 0 1 0 0 0 1
ADK WILD-TYPE 37 61 27 80 68 48 43 28 73
'PTPRB MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0331 (Fisher's exact test), Q value = 0.19

Table S12648.  Gene #1190: 'PTPRB MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
PTPRB MUTATED 3 0 0 1
PTPRB WILD-TYPE 43 58 64 42

Figure S3315.  Get High-res Image Gene #1190: 'PTPRB MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'PTPRB MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0633 (Fisher's exact test), Q value = 0.27

Table S12649.  Gene #1190: 'PTPRB MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
PTPRB MUTATED 3 1 0
PTPRB WILD-TYPE 48 82 77
'PTPRB MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00043 (Fisher's exact test), Q value = 0.014

Table S12650.  Gene #1190: 'PTPRB MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
PTPRB MUTATED 13 2 0 2
PTPRB WILD-TYPE 165 181 101 18

Figure S3316.  Get High-res Image Gene #1190: 'PTPRB MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'PTPRB MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.294 (Fisher's exact test), Q value = 0.62

Table S12651.  Gene #1190: 'PTPRB MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
PTPRB MUTATED 7 2 5
PTPRB WILD-TYPE 80 78 95
'PTPRB MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0693 (Fisher's exact test), Q value = 0.28

Table S12652.  Gene #1190: 'PTPRB MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
PTPRB MUTATED 5 2 8
PTPRB WILD-TYPE 84 158 130
'PTPRB MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.107 (Fisher's exact test), Q value = 0.36

Table S12653.  Gene #1190: 'PTPRB MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
PTPRB MUTATED 11 2 2
PTPRB WILD-TYPE 171 131 70
'PTPRB MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.67 (Fisher's exact test), Q value = 0.95

Table S12654.  Gene #1190: 'PTPRB MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
PTPRB MUTATED 4 4 5 5
PTPRB WILD-TYPE 108 92 87 181
'PTPRB MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.041 (Fisher's exact test), Q value = 0.21

Table S12655.  Gene #1190: 'PTPRB MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
PTPRB MUTATED 3 1 6 1 2 1 4
PTPRB WILD-TYPE 57 49 43 39 61 124 95

Figure S3317.  Get High-res Image Gene #1190: 'PTPRB MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'PTPRB MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.399 (Fisher's exact test), Q value = 0.72

Table S12656.  Gene #1190: 'PTPRB MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
PTPRB MUTATED 8 3 1 6
PTPRB WILD-TYPE 122 75 67 190
'PTPRB MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.541 (Fisher's exact test), Q value = 0.86

Table S12657.  Gene #1190: 'PTPRB MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
PTPRB MUTATED 2 4 2 3 4 1 0 1 1
PTPRB WILD-TYPE 38 58 26 77 65 47 43 27 73
'PTPRB MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.463 (Fisher's exact test), Q value = 0.79

Table S12658.  Gene #1190: 'PTPRB MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
PTPRB MUTATED 1 0 2 1
PTPRB WILD-TYPE 32 31 25 18
'PTPRB MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.485 (Fisher's exact test), Q value = 0.81

Table S12659.  Gene #1190: 'PTPRB MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
PTPRB MUTATED 1 0 2 1
PTPRB WILD-TYPE 53 10 22 21
'ZNF280C MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.122 (Fisher's exact test), Q value = 0.39

Table S12660.  Gene #1191: 'ZNF280C MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ZNF280C MUTATED 1 1 0 3
ZNF280C WILD-TYPE 45 57 64 40
'ZNF280C MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S12661.  Gene #1191: 'ZNF280C MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ZNF280C MUTATED 1 2 2
ZNF280C WILD-TYPE 50 81 75
'ZNF280C MUTATION STATUS' versus 'CN_CNMF'

P value = 0.397 (Fisher's exact test), Q value = 0.72

Table S12662.  Gene #1191: 'ZNF280C MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ZNF280C MUTATED 8 5 1 0
ZNF280C WILD-TYPE 170 178 100 20
'ZNF280C MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.473 (Fisher's exact test), Q value = 0.8

Table S12663.  Gene #1191: 'ZNF280C MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ZNF280C MUTATED 5 3 2
ZNF280C WILD-TYPE 82 77 98
'ZNF280C MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.109 (Fisher's exact test), Q value = 0.37

Table S12664.  Gene #1191: 'ZNF280C MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ZNF280C MUTATED 0 5 6
ZNF280C WILD-TYPE 89 155 132
'ZNF280C MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.784 (Fisher's exact test), Q value = 1

Table S12665.  Gene #1191: 'ZNF280C MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ZNF280C MUTATED 5 5 1
ZNF280C WILD-TYPE 177 128 71
'ZNF280C MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.852 (Fisher's exact test), Q value = 1

Table S12666.  Gene #1191: 'ZNF280C MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ZNF280C MUTATED 4 3 3 4
ZNF280C WILD-TYPE 108 93 89 182
'ZNF280C MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.708 (Fisher's exact test), Q value = 0.98

Table S12667.  Gene #1191: 'ZNF280C MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ZNF280C MUTATED 3 1 2 2 2 2 2
ZNF280C WILD-TYPE 57 49 47 38 61 123 97
'ZNF280C MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.924 (Fisher's exact test), Q value = 1

Table S12668.  Gene #1191: 'ZNF280C MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ZNF280C MUTATED 4 3 2 5
ZNF280C WILD-TYPE 126 75 66 191
'ZNF280C MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.718 (Fisher's exact test), Q value = 0.99

Table S12669.  Gene #1191: 'ZNF280C MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ZNF280C MUTATED 2 2 2 1 1 1 2 1 2
ZNF280C WILD-TYPE 38 60 26 79 68 47 41 27 72
'ZNF280C MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.666 (Fisher's exact test), Q value = 0.95

Table S12670.  Gene #1191: 'ZNF280C MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
ZNF280C MUTATED 1 1 1 2
ZNF280C WILD-TYPE 32 30 26 17
'ZNF280C MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.425 (Fisher's exact test), Q value = 0.75

Table S12671.  Gene #1191: 'ZNF280C MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
ZNF280C MUTATED 3 1 0 1
ZNF280C WILD-TYPE 51 9 24 21
'ATIC MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.12 (Fisher's exact test), Q value = 0.39

Table S12672.  Gene #1192: 'ATIC MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ATIC MUTATED 2 0 0 1
ATIC WILD-TYPE 44 58 64 42
'ATIC MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0132 (Fisher's exact test), Q value = 0.11

Table S12673.  Gene #1192: 'ATIC MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ATIC MUTATED 3 0 0
ATIC WILD-TYPE 48 83 77

Figure S3318.  Get High-res Image Gene #1192: 'ATIC MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'ATIC MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0124 (Fisher's exact test), Q value = 0.11

Table S12674.  Gene #1192: 'ATIC MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ATIC MUTATED 11 3 0 0
ATIC WILD-TYPE 167 180 101 20

Figure S3319.  Get High-res Image Gene #1192: 'ATIC MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ATIC MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.399 (Fisher's exact test), Q value = 0.72

Table S12675.  Gene #1192: 'ATIC MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ATIC MUTATED 2 2 6
ATIC WILD-TYPE 85 78 94
'ATIC MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.926 (Fisher's exact test), Q value = 1

Table S12676.  Gene #1192: 'ATIC MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ATIC MUTATED 3 4 4
ATIC WILD-TYPE 86 156 134
'ATIC MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.194 (Fisher's exact test), Q value = 0.5

Table S12677.  Gene #1192: 'ATIC MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ATIC MUTATED 5 6 0
ATIC WILD-TYPE 177 127 72
'ATIC MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.258 (Fisher's exact test), Q value = 0.58

Table S12678.  Gene #1192: 'ATIC MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ATIC MUTATED 2 6 2 4
ATIC WILD-TYPE 110 90 90 182
'ATIC MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0365 (Fisher's exact test), Q value = 0.2

Table S12679.  Gene #1192: 'ATIC MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ATIC MUTATED 1 2 3 3 1 0 4
ATIC WILD-TYPE 59 48 46 37 62 125 95

Figure S3320.  Get High-res Image Gene #1192: 'ATIC MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ATIC MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.411 (Fisher's exact test), Q value = 0.74

Table S12680.  Gene #1192: 'ATIC MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ATIC MUTATED 6 2 2 3
ATIC WILD-TYPE 124 76 66 193
'ATIC MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.354 (Fisher's exact test), Q value = 0.68

Table S12681.  Gene #1192: 'ATIC MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ATIC MUTATED 2 3 0 2 3 0 2 1 0
ATIC WILD-TYPE 38 59 28 78 66 48 41 27 74
'ATIC MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.783 (Fisher's exact test), Q value = 1

Table S12682.  Gene #1192: 'ATIC MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
ATIC MUTATED 1 0 1 1
ATIC WILD-TYPE 32 31 26 18
'ATIC MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S12683.  Gene #1192: 'ATIC MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
ATIC MUTATED 2 0 1 0
ATIC WILD-TYPE 52 10 23 22
'USP16 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0319 (Fisher's exact test), Q value = 0.18

Table S12684.  Gene #1193: 'USP16 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
USP16 MUTATED 3 0 0 1
USP16 WILD-TYPE 43 58 64 42

Figure S3321.  Get High-res Image Gene #1193: 'USP16 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'USP16 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.555 (Fisher's exact test), Q value = 0.87

Table S12685.  Gene #1193: 'USP16 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
USP16 MUTATED 2 1 1
USP16 WILD-TYPE 49 82 76
'USP16 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.164 (Fisher's exact test), Q value = 0.46

Table S12686.  Gene #1193: 'USP16 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
USP16 MUTATED 6 2 0 0
USP16 WILD-TYPE 172 181 101 20
'USP16 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.56 (Fisher's exact test), Q value = 0.87

Table S12687.  Gene #1193: 'USP16 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
USP16 MUTATED 2 0 2
USP16 WILD-TYPE 85 80 98
'USP16 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.543 (Fisher's exact test), Q value = 0.86

Table S12688.  Gene #1193: 'USP16 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
USP16 MUTATED 1 1 3
USP16 WILD-TYPE 88 159 135
'USP16 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.506 (Fisher's exact test), Q value = 0.83

Table S12689.  Gene #1193: 'USP16 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
USP16 MUTATED 4 1 0
USP16 WILD-TYPE 178 132 72
'USP16 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.418 (Fisher's exact test), Q value = 0.75

Table S12690.  Gene #1193: 'USP16 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
USP16 MUTATED 0 2 2 4
USP16 WILD-TYPE 112 94 90 182
'USP16 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.467 (Fisher's exact test), Q value = 0.79

Table S12691.  Gene #1193: 'USP16 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
USP16 MUTATED 1 1 2 0 0 1 3
USP16 WILD-TYPE 59 49 47 40 63 124 96
'USP16 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.322 (Fisher's exact test), Q value = 0.65

Table S12692.  Gene #1193: 'USP16 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
USP16 MUTATED 4 0 0 3
USP16 WILD-TYPE 126 78 68 193
'USP16 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.82 (Fisher's exact test), Q value = 1

Table S12693.  Gene #1193: 'USP16 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
USP16 MUTATED 0 1 0 2 1 1 1 1 0
USP16 WILD-TYPE 40 61 28 78 68 47 42 27 74
'CIR1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.073 (Fisher's exact test), Q value = 0.29

Table S12694.  Gene #1194: 'CIR1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
CIR1 MUTATED 2 0 0 2
CIR1 WILD-TYPE 44 58 64 41
'CIR1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.232 (Fisher's exact test), Q value = 0.55

Table S12695.  Gene #1194: 'CIR1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
CIR1 MUTATED 2 2 0
CIR1 WILD-TYPE 49 81 77
'CIR1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.249 (Fisher's exact test), Q value = 0.57

Table S12696.  Gene #1194: 'CIR1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
CIR1 MUTATED 6 2 1 1
CIR1 WILD-TYPE 172 181 100 19
'CIR1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.681 (Fisher's exact test), Q value = 0.96

Table S12697.  Gene #1194: 'CIR1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
CIR1 MUTATED 3 1 2
CIR1 WILD-TYPE 84 79 98
'CIR1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.238 (Fisher's exact test), Q value = 0.56

Table S12698.  Gene #1194: 'CIR1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
CIR1 MUTATED 0 2 4
CIR1 WILD-TYPE 89 158 134
'CIR1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.294 (Fisher's exact test), Q value = 0.62

Table S12699.  Gene #1194: 'CIR1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
CIR1 MUTATED 2 4 0
CIR1 WILD-TYPE 180 129 72
'CIR1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.5 (Fisher's exact test), Q value = 0.83

Table S12700.  Gene #1194: 'CIR1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
CIR1 MUTATED 2 4 1 3
CIR1 WILD-TYPE 110 92 91 183
'CIR1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.099 (Fisher's exact test), Q value = 0.35

Table S12701.  Gene #1194: 'CIR1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
CIR1 MUTATED 0 2 0 3 1 1 3
CIR1 WILD-TYPE 60 48 49 37 62 124 96
'CIR1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.567 (Fisher's exact test), Q value = 0.87

Table S12702.  Gene #1194: 'CIR1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
CIR1 MUTATED 3 0 2 4
CIR1 WILD-TYPE 127 78 66 192
'CIR1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.436 (Fisher's exact test), Q value = 0.76

Table S12703.  Gene #1194: 'CIR1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
CIR1 MUTATED 1 0 1 2 0 1 2 1 1
CIR1 WILD-TYPE 39 62 27 78 69 47 41 27 73
'CIR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S12704.  Gene #1194: 'CIR1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
CIR1 MUTATED 1 1 1 0
CIR1 WILD-TYPE 32 30 26 19
'CIR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.197 (Fisher's exact test), Q value = 0.5

Table S12705.  Gene #1194: 'CIR1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
CIR1 MUTATED 1 1 0 1
CIR1 WILD-TYPE 53 9 24 21
'OR4C15 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0642 (Fisher's exact test), Q value = 0.27

Table S12706.  Gene #1195: 'OR4C15 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
OR4C15 MUTATED 1 0 0 2
OR4C15 WILD-TYPE 45 58 64 41
'OR4C15 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S12707.  Gene #1195: 'OR4C15 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
OR4C15 MUTATED 1 1 1
OR4C15 WILD-TYPE 50 82 76
'OR4C15 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.104 (Fisher's exact test), Q value = 0.36

Table S12708.  Gene #1195: 'OR4C15 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
OR4C15 MUTATED 11 3 2 0
OR4C15 WILD-TYPE 167 180 99 20
'OR4C15 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.101 (Fisher's exact test), Q value = 0.35

Table S12709.  Gene #1195: 'OR4C15 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
OR4C15 MUTATED 7 1 4
OR4C15 WILD-TYPE 80 79 96
'OR4C15 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.752 (Fisher's exact test), Q value = 1

Table S12710.  Gene #1195: 'OR4C15 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
OR4C15 MUTATED 2 7 6
OR4C15 WILD-TYPE 87 153 132
'OR4C15 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.13 (Fisher's exact test), Q value = 0.4

Table S12711.  Gene #1195: 'OR4C15 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
OR4C15 MUTATED 5 9 1
OR4C15 WILD-TYPE 177 124 71
'OR4C15 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.708 (Fisher's exact test), Q value = 0.98

Table S12712.  Gene #1195: 'OR4C15 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
OR4C15 MUTATED 3 5 3 5
OR4C15 WILD-TYPE 109 91 89 181
'OR4C15 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0264 (Fisher's exact test), Q value = 0.16

Table S12713.  Gene #1195: 'OR4C15 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
OR4C15 MUTATED 4 2 2 4 0 1 3
OR4C15 WILD-TYPE 56 48 47 36 63 124 96

Figure S3322.  Get High-res Image Gene #1195: 'OR4C15 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'OR4C15 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.945 (Fisher's exact test), Q value = 1

Table S12714.  Gene #1195: 'OR4C15 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
OR4C15 MUTATED 4 2 3 6
OR4C15 WILD-TYPE 126 76 65 190
'OR4C15 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.216 (Fisher's exact test), Q value = 0.53

Table S12715.  Gene #1195: 'OR4C15 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
OR4C15 MUTATED 3 3 0 0 2 1 3 0 3
OR4C15 WILD-TYPE 37 59 28 80 67 47 40 28 71
'OR4C15 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.463 (Fisher's exact test), Q value = 0.79

Table S12716.  Gene #1195: 'OR4C15 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
OR4C15 MUTATED 1 0 2 1
OR4C15 WILD-TYPE 32 31 25 18
'OR4C15 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S12717.  Gene #1195: 'OR4C15 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
OR4C15 MUTATED 2 0 1 1
OR4C15 WILD-TYPE 52 10 23 21
'ANK3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00023 (Fisher's exact test), Q value = 0.0091

Table S12718.  Gene #1196: 'ANK3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ANK3 MUTATED 8 2 0 7
ANK3 WILD-TYPE 38 56 64 36

Figure S3323.  Get High-res Image Gene #1196: 'ANK3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'ANK3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00492 (Fisher's exact test), Q value = 0.063

Table S12719.  Gene #1196: 'ANK3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ANK3 MUTATED 10 4 3
ANK3 WILD-TYPE 41 79 74

Figure S3324.  Get High-res Image Gene #1196: 'ANK3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'ANK3 MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S12720.  Gene #1196: 'ANK3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ANK3 MUTATED 44 6 3 1
ANK3 WILD-TYPE 134 177 98 19

Figure S3325.  Get High-res Image Gene #1196: 'ANK3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ANK3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0801 (Fisher's exact test), Q value = 0.3

Table S12721.  Gene #1196: 'ANK3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ANK3 MUTATED 14 5 16
ANK3 WILD-TYPE 73 75 84
'ANK3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.236 (Fisher's exact test), Q value = 0.56

Table S12722.  Gene #1196: 'ANK3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ANK3 MUTATED 8 17 22
ANK3 WILD-TYPE 81 143 116
'ANK3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.538 (Fisher's exact test), Q value = 0.86

Table S12723.  Gene #1196: 'ANK3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ANK3 MUTATED 23 18 6
ANK3 WILD-TYPE 159 115 66
'ANK3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0554 (Fisher's exact test), Q value = 0.26

Table S12724.  Gene #1196: 'ANK3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ANK3 MUTATED 7 17 12 18
ANK3 WILD-TYPE 105 79 80 168
'ANK3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S12725.  Gene #1196: 'ANK3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ANK3 MUTATED 6 7 19 2 2 3 15
ANK3 WILD-TYPE 54 43 30 38 61 122 84

Figure S3326.  Get High-res Image Gene #1196: 'ANK3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ANK3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0246 (Fisher's exact test), Q value = 0.16

Table S12726.  Gene #1196: 'ANK3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ANK3 MUTATED 21 6 2 23
ANK3 WILD-TYPE 109 72 66 173

Figure S3327.  Get High-res Image Gene #1196: 'ANK3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'ANK3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 2e-05 (Fisher's exact test), Q value = 0.0017

Table S12727.  Gene #1196: 'ANK3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ANK3 MUTATED 6 7 6 4 19 1 4 3 2
ANK3 WILD-TYPE 34 55 22 76 50 47 39 25 72

Figure S3328.  Get High-res Image Gene #1196: 'ANK3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'ANK3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00012 (Fisher's exact test), Q value = 0.0059

Table S12728.  Gene #1196: 'ANK3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
ANK3 MUTATED 2 0 1 7
ANK3 WILD-TYPE 31 31 26 12

Figure S3329.  Get High-res Image Gene #1196: 'ANK3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'ANK3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0255 (Fisher's exact test), Q value = 0.16

Table S12729.  Gene #1196: 'ANK3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
ANK3 MUTATED 4 0 6 0
ANK3 WILD-TYPE 50 10 18 22

Figure S3330.  Get High-res Image Gene #1196: 'ANK3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

'PPFIBP1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0315 (Fisher's exact test), Q value = 0.18

Table S12730.  Gene #1197: 'PPFIBP1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
PPFIBP1 MUTATED 3 0 0 1
PPFIBP1 WILD-TYPE 43 58 64 42

Figure S3331.  Get High-res Image Gene #1197: 'PPFIBP1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'PPFIBP1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0406 (Fisher's exact test), Q value = 0.21

Table S12731.  Gene #1197: 'PPFIBP1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
PPFIBP1 MUTATED 3 0 1
PPFIBP1 WILD-TYPE 48 83 76

Figure S3332.  Get High-res Image Gene #1197: 'PPFIBP1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'PPFIBP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00077 (Fisher's exact test), Q value = 0.021

Table S12732.  Gene #1197: 'PPFIBP1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
PPFIBP1 MUTATED 12 1 0 1
PPFIBP1 WILD-TYPE 166 182 101 19

Figure S3333.  Get High-res Image Gene #1197: 'PPFIBP1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'PPFIBP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.554 (Fisher's exact test), Q value = 0.87

Table S12733.  Gene #1197: 'PPFIBP1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
PPFIBP1 MUTATED 5 2 3
PPFIBP1 WILD-TYPE 82 78 97
'PPFIBP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0463 (Fisher's exact test), Q value = 0.23

Table S12734.  Gene #1197: 'PPFIBP1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
PPFIBP1 MUTATED 0 5 8
PPFIBP1 WILD-TYPE 89 155 130

Figure S3334.  Get High-res Image Gene #1197: 'PPFIBP1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'PPFIBP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S12735.  Gene #1197: 'PPFIBP1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
PPFIBP1 MUTATED 6 5 2
PPFIBP1 WILD-TYPE 176 128 70
'PPFIBP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.855 (Fisher's exact test), Q value = 1

Table S12736.  Gene #1197: 'PPFIBP1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
PPFIBP1 MUTATED 4 3 3 4
PPFIBP1 WILD-TYPE 108 93 89 182
'PPFIBP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0179 (Fisher's exact test), Q value = 0.13

Table S12737.  Gene #1197: 'PPFIBP1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
PPFIBP1 MUTATED 2 2 5 1 1 0 3
PPFIBP1 WILD-TYPE 58 48 44 39 62 125 96

Figure S3335.  Get High-res Image Gene #1197: 'PPFIBP1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'PPFIBP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0981 (Fisher's exact test), Q value = 0.34

Table S12738.  Gene #1197: 'PPFIBP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
PPFIBP1 MUTATED 5 5 0 4
PPFIBP1 WILD-TYPE 125 73 68 192
'PPFIBP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.095 (Fisher's exact test), Q value = 0.34

Table S12739.  Gene #1197: 'PPFIBP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
PPFIBP1 MUTATED 1 3 1 0 3 3 1 2 0
PPFIBP1 WILD-TYPE 39 59 27 80 66 45 42 26 74
'PPFIBP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.625 (Fisher's exact test), Q value = 0.92

Table S12740.  Gene #1197: 'PPFIBP1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
PPFIBP1 MUTATED 2 2 0 1
PPFIBP1 WILD-TYPE 31 29 27 18
'PPFIBP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.471 (Fisher's exact test), Q value = 0.8

Table S12741.  Gene #1197: 'PPFIBP1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
PPFIBP1 MUTATED 3 0 0 2
PPFIBP1 WILD-TYPE 51 10 24 20
'NTNG1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.138 (Fisher's exact test), Q value = 0.41

Table S12742.  Gene #1198: 'NTNG1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
NTNG1 MUTATED 0 2 0 2
NTNG1 WILD-TYPE 46 56 64 41
'NTNG1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.835 (Fisher's exact test), Q value = 1

Table S12743.  Gene #1198: 'NTNG1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
NTNG1 MUTATED 1 1 2
NTNG1 WILD-TYPE 50 82 75
'NTNG1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.374 (Fisher's exact test), Q value = 0.7

Table S12744.  Gene #1198: 'NTNG1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
NTNG1 MUTATED 10 5 2 0
NTNG1 WILD-TYPE 168 178 99 20
'NTNG1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.022 (Fisher's exact test), Q value = 0.15

Table S12745.  Gene #1198: 'NTNG1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
NTNG1 MUTATED 5 0 8
NTNG1 WILD-TYPE 82 80 92

Figure S3336.  Get High-res Image Gene #1198: 'NTNG1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'NTNG1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.162 (Fisher's exact test), Q value = 0.45

Table S12746.  Gene #1198: 'NTNG1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
NTNG1 MUTATED 1 10 5
NTNG1 WILD-TYPE 88 150 133
'NTNG1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.945 (Fisher's exact test), Q value = 1

Table S12747.  Gene #1198: 'NTNG1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
NTNG1 MUTATED 7 6 3
NTNG1 WILD-TYPE 175 127 69
'NTNG1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0117 (Fisher's exact test), Q value = 0.11

Table S12748.  Gene #1198: 'NTNG1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
NTNG1 MUTATED 1 9 2 5
NTNG1 WILD-TYPE 111 87 90 181

Figure S3337.  Get High-res Image Gene #1198: 'NTNG1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'NTNG1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00932 (Fisher's exact test), Q value = 0.091

Table S12749.  Gene #1198: 'NTNG1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
NTNG1 MUTATED 1 2 7 1 2 1 3
NTNG1 WILD-TYPE 59 48 42 39 61 124 96

Figure S3338.  Get High-res Image Gene #1198: 'NTNG1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'NTNG1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.018 (Fisher's exact test), Q value = 0.13

Table S12750.  Gene #1198: 'NTNG1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
NTNG1 MUTATED 10 2 0 4
NTNG1 WILD-TYPE 120 76 68 192

Figure S3339.  Get High-res Image Gene #1198: 'NTNG1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'NTNG1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0196 (Fisher's exact test), Q value = 0.14

Table S12751.  Gene #1198: 'NTNG1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
NTNG1 MUTATED 4 3 0 0 6 1 0 0 2
NTNG1 WILD-TYPE 36 59 28 80 63 47 43 28 72

Figure S3340.  Get High-res Image Gene #1198: 'NTNG1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'NTNG1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.192 (Fisher's exact test), Q value = 0.49

Table S12752.  Gene #1198: 'NTNG1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
NTNG1 MUTATED 0 1 1 2
NTNG1 WILD-TYPE 33 30 26 17
'NTNG1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.129 (Fisher's exact test), Q value = 0.4

Table S12753.  Gene #1198: 'NTNG1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
NTNG1 MUTATED 1 0 3 0
NTNG1 WILD-TYPE 53 10 21 22
'TRPA1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.298 (Fisher's exact test), Q value = 0.63

Table S12754.  Gene #1199: 'TRPA1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
TRPA1 MUTATED 3 1 2 4
TRPA1 WILD-TYPE 43 57 62 39
'TRPA1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.507 (Fisher's exact test), Q value = 0.83

Table S12755.  Gene #1199: 'TRPA1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
TRPA1 MUTATED 4 3 3
TRPA1 WILD-TYPE 47 80 74
'TRPA1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.413 (Fisher's exact test), Q value = 0.74

Table S12756.  Gene #1199: 'TRPA1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
TRPA1 MUTATED 16 11 5 0
TRPA1 WILD-TYPE 162 172 96 20
'TRPA1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.19 (Fisher's exact test), Q value = 0.49

Table S12757.  Gene #1199: 'TRPA1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
TRPA1 MUTATED 3 8 9
TRPA1 WILD-TYPE 84 72 91
'TRPA1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.425 (Fisher's exact test), Q value = 0.75

Table S12758.  Gene #1199: 'TRPA1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
TRPA1 MUTATED 4 13 13
TRPA1 WILD-TYPE 85 147 125
'TRPA1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.968 (Fisher's exact test), Q value = 1

Table S12759.  Gene #1199: 'TRPA1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
TRPA1 MUTATED 14 11 5
TRPA1 WILD-TYPE 168 122 67
'TRPA1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.518 (Fisher's exact test), Q value = 0.84

Table S12760.  Gene #1199: 'TRPA1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
TRPA1 MUTATED 10 7 5 9
TRPA1 WILD-TYPE 102 89 87 177
'TRPA1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00474 (Fisher's exact test), Q value = 0.062

Table S12761.  Gene #1199: 'TRPA1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
TRPA1 MUTATED 8 1 7 1 4 2 8
TRPA1 WILD-TYPE 52 49 42 39 59 123 91

Figure S3341.  Get High-res Image Gene #1199: 'TRPA1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'TRPA1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.802 (Fisher's exact test), Q value = 1

Table S12762.  Gene #1199: 'TRPA1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
TRPA1 MUTATED 11 4 4 12
TRPA1 WILD-TYPE 119 74 64 184
'TRPA1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.849 (Fisher's exact test), Q value = 1

Table S12763.  Gene #1199: 'TRPA1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
TRPA1 MUTATED 1 4 2 4 7 2 4 1 6
TRPA1 WILD-TYPE 39 58 26 76 62 46 39 27 68
'TRPA1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.136 (Fisher's exact test), Q value = 0.41

Table S12764.  Gene #1199: 'TRPA1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
TRPA1 MUTATED 2 1 1 4
TRPA1 WILD-TYPE 31 30 26 15
'TRPA1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.324 (Fisher's exact test), Q value = 0.65

Table S12765.  Gene #1199: 'TRPA1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
TRPA1 MUTATED 2 1 2 3
TRPA1 WILD-TYPE 52 9 22 19
'CWF19L2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00251 (Fisher's exact test), Q value = 0.044

Table S12766.  Gene #1200: 'CWF19L2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
CWF19L2 MUTATED 4 0 0 4
CWF19L2 WILD-TYPE 42 58 64 39

Figure S3342.  Get High-res Image Gene #1200: 'CWF19L2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'CWF19L2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.595 (Fisher's exact test), Q value = 0.9

Table S12767.  Gene #1200: 'CWF19L2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
CWF19L2 MUTATED 3 3 2
CWF19L2 WILD-TYPE 48 80 75
'CWF19L2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00362 (Fisher's exact test), Q value = 0.055

Table S12768.  Gene #1200: 'CWF19L2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
CWF19L2 MUTATED 15 3 1 0
CWF19L2 WILD-TYPE 163 180 100 20

Figure S3343.  Get High-res Image Gene #1200: 'CWF19L2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'CWF19L2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.197 (Fisher's exact test), Q value = 0.5

Table S12769.  Gene #1200: 'CWF19L2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
CWF19L2 MUTATED 6 1 4
CWF19L2 WILD-TYPE 81 79 96
'CWF19L2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.171 (Fisher's exact test), Q value = 0.47

Table S12770.  Gene #1200: 'CWF19L2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
CWF19L2 MUTATED 2 2 7
CWF19L2 WILD-TYPE 87 158 131
'CWF19L2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0494 (Fisher's exact test), Q value = 0.24

Table S12771.  Gene #1200: 'CWF19L2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
CWF19L2 MUTATED 9 2 0
CWF19L2 WILD-TYPE 173 131 72

Figure S3344.  Get High-res Image Gene #1200: 'CWF19L2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'CWF19L2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.571 (Fisher's exact test), Q value = 0.88

Table S12772.  Gene #1200: 'CWF19L2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
CWF19L2 MUTATED 2 5 4 8
CWF19L2 WILD-TYPE 110 91 88 178
'CWF19L2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0111 (Fisher's exact test), Q value = 0.1

Table S12773.  Gene #1200: 'CWF19L2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
CWF19L2 MUTATED 1 0 7 1 3 2 5
CWF19L2 WILD-TYPE 59 50 42 39 60 123 94

Figure S3345.  Get High-res Image Gene #1200: 'CWF19L2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CWF19L2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.715 (Fisher's exact test), Q value = 0.99

Table S12774.  Gene #1200: 'CWF19L2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
CWF19L2 MUTATED 5 4 1 9
CWF19L2 WILD-TYPE 125 74 67 187
'CWF19L2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00222 (Fisher's exact test), Q value = 0.04

Table S12775.  Gene #1200: 'CWF19L2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
CWF19L2 MUTATED 0 5 3 2 8 0 0 0 1
CWF19L2 WILD-TYPE 40 57 25 78 61 48 43 28 73

Figure S3346.  Get High-res Image Gene #1200: 'CWF19L2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'CWF19L2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.268 (Fisher's exact test), Q value = 0.59

Table S12776.  Gene #1200: 'CWF19L2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
CWF19L2 MUTATED 1 0 1 2
CWF19L2 WILD-TYPE 32 31 26 17
'CWF19L2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.672 (Fisher's exact test), Q value = 0.95

Table S12777.  Gene #1200: 'CWF19L2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
CWF19L2 MUTATED 2 0 2 0
CWF19L2 WILD-TYPE 52 10 22 22
'SERPINA9 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0494 (Fisher's exact test), Q value = 0.24

Table S12778.  Gene #1201: 'SERPINA9 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
SERPINA9 MUTATED 4 1 5 1
SERPINA9 WILD-TYPE 174 182 96 19

Figure S3347.  Get High-res Image Gene #1201: 'SERPINA9 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'SERPINA9 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.558 (Fisher's exact test), Q value = 0.87

Table S12779.  Gene #1201: 'SERPINA9 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
SERPINA9 MUTATED 5 2 3
SERPINA9 WILD-TYPE 82 78 97
'SERPINA9 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.693 (Fisher's exact test), Q value = 0.97

Table S12780.  Gene #1201: 'SERPINA9 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
SERPINA9 MUTATED 1 5 3
SERPINA9 WILD-TYPE 88 155 135
'SERPINA9 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.667 (Fisher's exact test), Q value = 0.95

Table S12781.  Gene #1201: 'SERPINA9 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
SERPINA9 MUTATED 3 4 2
SERPINA9 WILD-TYPE 179 129 70
'SERPINA9 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.047 (Fisher's exact test), Q value = 0.23

Table S12782.  Gene #1201: 'SERPINA9 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
SERPINA9 MUTATED 2 3 5 1
SERPINA9 WILD-TYPE 110 93 87 185

Figure S3348.  Get High-res Image Gene #1201: 'SERPINA9 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'SERPINA9 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 8e-04 (Fisher's exact test), Q value = 0.021

Table S12783.  Gene #1201: 'SERPINA9 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
SERPINA9 MUTATED 0 1 4 0 5 1 0
SERPINA9 WILD-TYPE 60 49 45 40 58 124 99

Figure S3349.  Get High-res Image Gene #1201: 'SERPINA9 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'SERPINA9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0093 (Fisher's exact test), Q value = 0.091

Table S12784.  Gene #1201: 'SERPINA9 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
SERPINA9 MUTATED 7 3 0 1
SERPINA9 WILD-TYPE 123 75 68 195

Figure S3350.  Get High-res Image Gene #1201: 'SERPINA9 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'SERPINA9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.115 (Fisher's exact test), Q value = 0.38

Table S12785.  Gene #1201: 'SERPINA9 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
SERPINA9 MUTATED 3 2 2 1 2 0 1 0 0
SERPINA9 WILD-TYPE 37 60 26 79 67 48 42 28 74
'SERPINA9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.357 (Fisher's exact test), Q value = 0.69

Table S12786.  Gene #1201: 'SERPINA9 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
SERPINA9 MUTATED 1 1 0 2
SERPINA9 WILD-TYPE 32 30 27 17
'SERPINA9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.869 (Fisher's exact test), Q value = 1

Table S12787.  Gene #1201: 'SERPINA9 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
SERPINA9 MUTATED 3 0 1 0
SERPINA9 WILD-TYPE 51 10 23 22
'HSP90AA1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0643 (Fisher's exact test), Q value = 0.28

Table S12788.  Gene #1202: 'HSP90AA1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
HSP90AA1 MUTATED 1 0 0 2
HSP90AA1 WILD-TYPE 45 58 64 41
'HSP90AA1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S12789.  Gene #1202: 'HSP90AA1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
HSP90AA1 MUTATED 1 1 1
HSP90AA1 WILD-TYPE 50 82 76
'HSP90AA1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.389 (Fisher's exact test), Q value = 0.72

Table S12790.  Gene #1202: 'HSP90AA1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
HSP90AA1 MUTATED 5 4 0 0
HSP90AA1 WILD-TYPE 173 179 101 20
'HSP90AA1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.291 (Fisher's exact test), Q value = 0.62

Table S12791.  Gene #1202: 'HSP90AA1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
HSP90AA1 MUTATED 3 0 3
HSP90AA1 WILD-TYPE 84 80 97
'HSP90AA1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.382 (Fisher's exact test), Q value = 0.71

Table S12792.  Gene #1202: 'HSP90AA1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
HSP90AA1 MUTATED 1 2 5
HSP90AA1 WILD-TYPE 88 158 133
'HSP90AA1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S12793.  Gene #1202: 'HSP90AA1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
HSP90AA1 MUTATED 4 3 1
HSP90AA1 WILD-TYPE 178 130 71
'HSP90AA1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.968 (Fisher's exact test), Q value = 1

Table S12794.  Gene #1202: 'HSP90AA1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
HSP90AA1 MUTATED 2 2 2 3
HSP90AA1 WILD-TYPE 110 94 90 183
'HSP90AA1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.18 (Fisher's exact test), Q value = 0.48

Table S12795.  Gene #1202: 'HSP90AA1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
HSP90AA1 MUTATED 1 1 2 2 1 0 2
HSP90AA1 WILD-TYPE 59 49 47 38 62 125 97
'HSP90AA1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.892 (Fisher's exact test), Q value = 1

Table S12796.  Gene #1202: 'HSP90AA1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
HSP90AA1 MUTATED 3 2 1 3
HSP90AA1 WILD-TYPE 127 76 67 193
'HSP90AA1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.104 (Fisher's exact test), Q value = 0.36

Table S12797.  Gene #1202: 'HSP90AA1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
HSP90AA1 MUTATED 1 2 2 0 3 1 0 0 0
HSP90AA1 WILD-TYPE 39 60 26 80 66 47 43 28 74
'HSP90AA1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.484 (Fisher's exact test), Q value = 0.81

Table S12798.  Gene #1202: 'HSP90AA1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
HSP90AA1 MUTATED 2 0 1 0
HSP90AA1 WILD-TYPE 31 31 26 19
'HSP90AA1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.84 (Fisher's exact test), Q value = 1

Table S12799.  Gene #1202: 'HSP90AA1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
HSP90AA1 MUTATED 2 0 0 1
HSP90AA1 WILD-TYPE 52 10 24 21
'SATB1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.628 (Fisher's exact test), Q value = 0.92

Table S12800.  Gene #1203: 'SATB1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
SATB1 MUTATED 1 1 0 1
SATB1 WILD-TYPE 45 57 64 42
'SATB1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S12801.  Gene #1203: 'SATB1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
SATB1 MUTATED 1 1 1
SATB1 WILD-TYPE 50 82 76
'SATB1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.189 (Fisher's exact test), Q value = 0.49

Table S12802.  Gene #1203: 'SATB1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
SATB1 MUTATED 10 5 1 0
SATB1 WILD-TYPE 168 178 100 20
'SATB1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.655 (Fisher's exact test), Q value = 0.94

Table S12803.  Gene #1203: 'SATB1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
SATB1 MUTATED 3 5 6
SATB1 WILD-TYPE 84 75 94
'SATB1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0155 (Fisher's exact test), Q value = 0.12

Table S12804.  Gene #1203: 'SATB1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
SATB1 MUTATED 0 6 10
SATB1 WILD-TYPE 89 154 128

Figure S3351.  Get High-res Image Gene #1203: 'SATB1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'SATB1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0873 (Fisher's exact test), Q value = 0.32

Table S12805.  Gene #1203: 'SATB1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
SATB1 MUTATED 8 8 0
SATB1 WILD-TYPE 174 125 72
'SATB1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0866 (Fisher's exact test), Q value = 0.32

Table S12806.  Gene #1203: 'SATB1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
SATB1 MUTATED 6 5 4 2
SATB1 WILD-TYPE 106 91 88 184
'SATB1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00011 (Fisher's exact test), Q value = 0.0056

Table S12807.  Gene #1203: 'SATB1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
SATB1 MUTATED 2 3 8 2 0 1 1
SATB1 WILD-TYPE 58 47 41 38 63 124 98

Figure S3352.  Get High-res Image Gene #1203: 'SATB1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'SATB1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0378 (Fisher's exact test), Q value = 0.2

Table S12808.  Gene #1203: 'SATB1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
SATB1 MUTATED 10 2 2 3
SATB1 WILD-TYPE 120 76 66 193

Figure S3353.  Get High-res Image Gene #1203: 'SATB1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'SATB1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0658 (Fisher's exact test), Q value = 0.28

Table S12809.  Gene #1203: 'SATB1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
SATB1 MUTATED 1 4 1 1 6 1 3 0 0
SATB1 WILD-TYPE 39 58 27 79 63 47 40 28 74
'SATB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00074 (Fisher's exact test), Q value = 0.02

Table S12810.  Gene #1203: 'SATB1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
SATB1 MUTATED 0 0 0 4
SATB1 WILD-TYPE 33 31 27 15

Figure S3354.  Get High-res Image Gene #1203: 'SATB1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'SATB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.671 (Fisher's exact test), Q value = 0.95

Table S12811.  Gene #1203: 'SATB1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
SATB1 MUTATED 2 0 2 0
SATB1 WILD-TYPE 52 10 22 22
'FBXO45 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.628 (Fisher's exact test), Q value = 0.92

Table S12812.  Gene #1204: 'FBXO45 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
FBXO45 MUTATED 3 1 2 0
FBXO45 WILD-TYPE 175 182 99 20
'FBXO45 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.205 (Fisher's exact test), Q value = 0.51

Table S12813.  Gene #1204: 'FBXO45 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
FBXO45 MUTATED 3 0 1
FBXO45 WILD-TYPE 84 80 99
'FBXO45 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S12814.  Gene #1204: 'FBXO45 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
FBXO45 MUTATED 1 3 2
FBXO45 WILD-TYPE 88 157 136
'FBXO45 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S12815.  Gene #1204: 'FBXO45 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
FBXO45 MUTATED 3 2 1
FBXO45 WILD-TYPE 179 131 71
'FBXO45 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0235 (Fisher's exact test), Q value = 0.16

Table S12816.  Gene #1204: 'FBXO45 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
FBXO45 MUTATED 0 0 4 2
FBXO45 WILD-TYPE 112 96 88 184

Figure S3355.  Get High-res Image Gene #1204: 'FBXO45 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'FBXO45 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0885 (Fisher's exact test), Q value = 0.32

Table S12817.  Gene #1204: 'FBXO45 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
FBXO45 MUTATED 1 0 0 1 3 0 1
FBXO45 WILD-TYPE 59 50 49 39 60 125 98
'FBXO45 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.672 (Fisher's exact test), Q value = 0.95

Table S12818.  Gene #1204: 'FBXO45 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
FBXO45 MUTATED 1 2 1 2
FBXO45 WILD-TYPE 129 76 67 194
'FBXO45 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.571 (Fisher's exact test), Q value = 0.88

Table S12819.  Gene #1204: 'FBXO45 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
FBXO45 MUTATED 1 2 1 1 1 0 0 0 0
FBXO45 WILD-TYPE 39 60 27 79 68 48 43 28 74
'MMP7 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0739 (Fisher's exact test), Q value = 0.29

Table S12820.  Gene #1205: 'MMP7 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
MMP7 MUTATED 2 0 0 2
MMP7 WILD-TYPE 44 58 64 41
'MMP7 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0393 (Fisher's exact test), Q value = 0.21

Table S12821.  Gene #1205: 'MMP7 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
MMP7 MUTATED 3 0 1
MMP7 WILD-TYPE 48 83 76

Figure S3356.  Get High-res Image Gene #1205: 'MMP7 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'MMP7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0206 (Fisher's exact test), Q value = 0.14

Table S12822.  Gene #1205: 'MMP7 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
MMP7 MUTATED 6 2 0 2
MMP7 WILD-TYPE 172 181 101 18

Figure S3357.  Get High-res Image Gene #1205: 'MMP7 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'MMP7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.329 (Fisher's exact test), Q value = 0.66

Table S12823.  Gene #1205: 'MMP7 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
MMP7 MUTATED 3 0 2
MMP7 WILD-TYPE 84 80 98
'MMP7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.6 (Fisher's exact test), Q value = 0.9

Table S12824.  Gene #1205: 'MMP7 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
MMP7 MUTATED 1 4 5
MMP7 WILD-TYPE 88 156 133
'MMP7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.839 (Fisher's exact test), Q value = 1

Table S12825.  Gene #1205: 'MMP7 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
MMP7 MUTATED 4 4 2
MMP7 WILD-TYPE 178 129 70
'MMP7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0879 (Fisher's exact test), Q value = 0.32

Table S12826.  Gene #1205: 'MMP7 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
MMP7 MUTATED 2 5 0 3
MMP7 WILD-TYPE 110 91 92 183
'MMP7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.193 (Fisher's exact test), Q value = 0.5

Table S12827.  Gene #1205: 'MMP7 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
MMP7 MUTATED 0 3 1 0 1 1 4
MMP7 WILD-TYPE 60 47 48 40 62 124 95
'MMP7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.436 (Fisher's exact test), Q value = 0.76

Table S12828.  Gene #1205: 'MMP7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
MMP7 MUTATED 1 2 0 5
MMP7 WILD-TYPE 129 76 68 191
'MMP7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.235 (Fisher's exact test), Q value = 0.56

Table S12829.  Gene #1205: 'MMP7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
MMP7 MUTATED 1 0 0 0 4 1 1 0 1
MMP7 WILD-TYPE 39 62 28 80 65 47 42 28 73
'TMCO6 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.065 (Fisher's exact test), Q value = 0.28

Table S12830.  Gene #1206: 'TMCO6 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
TMCO6 MUTATED 1 0 0 2
TMCO6 WILD-TYPE 45 58 64 41
'TMCO6 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.252 (Fisher's exact test), Q value = 0.58

Table S12831.  Gene #1206: 'TMCO6 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
TMCO6 MUTATED 2 1 0
TMCO6 WILD-TYPE 49 82 77
'TMCO6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.061 (Fisher's exact test), Q value = 0.27

Table S12832.  Gene #1206: 'TMCO6 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
TMCO6 MUTATED 6 0 1 0
TMCO6 WILD-TYPE 172 183 100 20
'TMCO6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.322 (Fisher's exact test), Q value = 0.65

Table S12833.  Gene #1206: 'TMCO6 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
TMCO6 MUTATED 0 1 3
TMCO6 WILD-TYPE 87 79 97
'TMCO6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.632 (Fisher's exact test), Q value = 0.93

Table S12834.  Gene #1206: 'TMCO6 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
TMCO6 MUTATED 0 3 2
TMCO6 WILD-TYPE 89 157 136
'TMCO6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.342 (Fisher's exact test), Q value = 0.67

Table S12835.  Gene #1206: 'TMCO6 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
TMCO6 MUTATED 1 3 1
TMCO6 WILD-TYPE 181 130 71
'TMCO6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.952 (Fisher's exact test), Q value = 1

Table S12836.  Gene #1206: 'TMCO6 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
TMCO6 MUTATED 1 2 1 3
TMCO6 WILD-TYPE 111 94 91 183
'TMCO6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0575 (Fisher's exact test), Q value = 0.26

Table S12837.  Gene #1206: 'TMCO6 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
TMCO6 MUTATED 1 0 2 0 0 0 4
TMCO6 WILD-TYPE 59 50 47 40 63 125 95
'TMCO6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.903 (Fisher's exact test), Q value = 1

Table S12838.  Gene #1206: 'TMCO6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
TMCO6 MUTATED 2 1 0 4
TMCO6 WILD-TYPE 128 77 68 192
'TMCO6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.16 (Fisher's exact test), Q value = 0.45

Table S12839.  Gene #1206: 'TMCO6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
TMCO6 MUTATED 0 1 1 1 4 0 0 0 0
TMCO6 WILD-TYPE 40 61 27 79 65 48 43 28 74
'APAF1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00727 (Fisher's exact test), Q value = 0.079

Table S12840.  Gene #1207: 'APAF1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
APAF1 MUTATED 4 0 0 2
APAF1 WILD-TYPE 42 58 64 41

Figure S3358.  Get High-res Image Gene #1207: 'APAF1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'APAF1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00316 (Fisher's exact test), Q value = 0.05

Table S12841.  Gene #1207: 'APAF1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
APAF1 MUTATED 5 1 0
APAF1 WILD-TYPE 46 82 77

Figure S3359.  Get High-res Image Gene #1207: 'APAF1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'APAF1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.446 (Fisher's exact test), Q value = 0.77

Table S12842.  Gene #1207: 'APAF1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
APAF1 MUTATED 11 6 3 0
APAF1 WILD-TYPE 167 177 98 20
'APAF1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0777 (Fisher's exact test), Q value = 0.3

Table S12843.  Gene #1207: 'APAF1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
APAF1 MUTATED 1 6 7
APAF1 WILD-TYPE 86 74 93
'APAF1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.642 (Fisher's exact test), Q value = 0.93

Table S12844.  Gene #1207: 'APAF1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
APAF1 MUTATED 4 6 8
APAF1 WILD-TYPE 85 154 130
'APAF1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S12845.  Gene #1207: 'APAF1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
APAF1 MUTATED 9 6 3
APAF1 WILD-TYPE 173 127 69
'APAF1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.977 (Fisher's exact test), Q value = 1

Table S12846.  Gene #1207: 'APAF1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
APAF1 MUTATED 5 4 4 7
APAF1 WILD-TYPE 107 92 88 179
'APAF1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0977 (Fisher's exact test), Q value = 0.34

Table S12847.  Gene #1207: 'APAF1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
APAF1 MUTATED 4 2 4 2 1 1 6
APAF1 WILD-TYPE 56 48 45 38 62 124 93
'APAF1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0968 (Fisher's exact test), Q value = 0.34

Table S12848.  Gene #1207: 'APAF1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
APAF1 MUTATED 10 1 1 7
APAF1 WILD-TYPE 120 77 67 189
'APAF1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.156 (Fisher's exact test), Q value = 0.44

Table S12849.  Gene #1207: 'APAF1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
APAF1 MUTATED 4 1 2 4 5 0 1 1 1
APAF1 WILD-TYPE 36 61 26 76 64 48 42 27 73
'FGB MUTATION STATUS' versus 'CN_CNMF'

P value = 0.528 (Fisher's exact test), Q value = 0.85

Table S12850.  Gene #1208: 'FGB MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
FGB MUTATED 4 1 1 0
FGB WILD-TYPE 174 182 100 20
'FGB MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.259 (Fisher's exact test), Q value = 0.58

Table S12851.  Gene #1208: 'FGB MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
FGB MUTATED 2 2 0
FGB WILD-TYPE 85 78 100
'FGB MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.506 (Fisher's exact test), Q value = 0.83

Table S12852.  Gene #1208: 'FGB MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
FGB MUTATED 0 3 3
FGB WILD-TYPE 89 157 135
'FGB MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.291 (Fisher's exact test), Q value = 0.62

Table S12853.  Gene #1208: 'FGB MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
FGB MUTATED 2 4 0
FGB WILD-TYPE 180 129 72
'FGB MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.844 (Fisher's exact test), Q value = 1

Table S12854.  Gene #1208: 'FGB MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
FGB MUTATED 1 1 2 2
FGB WILD-TYPE 111 95 90 184
'FGB MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.207 (Fisher's exact test), Q value = 0.51

Table S12855.  Gene #1208: 'FGB MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
FGB MUTATED 1 2 0 1 1 0 1
FGB WILD-TYPE 59 48 49 39 62 125 98
'FGB MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.885 (Fisher's exact test), Q value = 1

Table S12856.  Gene #1208: 'FGB MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
FGB MUTATED 2 1 0 3
FGB WILD-TYPE 128 77 68 193
'FGB MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.742 (Fisher's exact test), Q value = 1

Table S12857.  Gene #1208: 'FGB MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
FGB MUTATED 1 1 1 0 1 1 0 0 1
FGB WILD-TYPE 39 61 27 80 68 47 43 28 73
'POLD3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00456 (Fisher's exact test), Q value = 0.061

Table S12858.  Gene #1209: 'POLD3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
POLD3 MUTATED 10 1 0 0
POLD3 WILD-TYPE 168 182 101 20

Figure S3360.  Get High-res Image Gene #1209: 'POLD3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'POLD3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.114 (Fisher's exact test), Q value = 0.37

Table S12859.  Gene #1209: 'POLD3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
POLD3 MUTATED 4 0 5
POLD3 WILD-TYPE 83 80 95
'POLD3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0936 (Fisher's exact test), Q value = 0.34

Table S12860.  Gene #1209: 'POLD3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
POLD3 MUTATED 1 2 7
POLD3 WILD-TYPE 88 158 131
'POLD3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.916 (Fisher's exact test), Q value = 1

Table S12861.  Gene #1209: 'POLD3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
POLD3 MUTATED 5 4 1
POLD3 WILD-TYPE 177 129 71
'POLD3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00918 (Fisher's exact test), Q value = 0.09

Table S12862.  Gene #1209: 'POLD3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
POLD3 MUTATED 0 6 3 2
POLD3 WILD-TYPE 112 90 89 184

Figure S3361.  Get High-res Image Gene #1209: 'POLD3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'POLD3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00081 (Fisher's exact test), Q value = 0.021

Table S12863.  Gene #1209: 'POLD3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
POLD3 MUTATED 0 3 5 1 0 0 2
POLD3 WILD-TYPE 60 47 44 39 63 125 97

Figure S3362.  Get High-res Image Gene #1209: 'POLD3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'POLD3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S12864.  Gene #1209: 'POLD3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
POLD3 MUTATED 3 2 1 5
POLD3 WILD-TYPE 127 76 67 191
'POLD3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.373 (Fisher's exact test), Q value = 0.7

Table S12865.  Gene #1209: 'POLD3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
POLD3 MUTATED 1 2 1 0 3 0 2 1 1
POLD3 WILD-TYPE 39 60 27 80 66 48 41 27 73
'POLD3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.256 (Fisher's exact test), Q value = 0.58

Table S12866.  Gene #1209: 'POLD3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
POLD3 MUTATED 2 0 0 1
POLD3 WILD-TYPE 31 31 27 18
'POLD3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.565 (Fisher's exact test), Q value = 0.87

Table S12867.  Gene #1209: 'POLD3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
POLD3 MUTATED 3 0 0 0
POLD3 WILD-TYPE 51 10 24 22
'CYP7B1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0224 (Fisher's exact test), Q value = 0.15

Table S12868.  Gene #1210: 'CYP7B1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
CYP7B1 MUTATED 2 0 0 3
CYP7B1 WILD-TYPE 44 58 64 40

Figure S3363.  Get High-res Image Gene #1210: 'CYP7B1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'CYP7B1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.253 (Fisher's exact test), Q value = 0.58

Table S12869.  Gene #1210: 'CYP7B1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
CYP7B1 MUTATED 3 1 1
CYP7B1 WILD-TYPE 48 82 76
'CYP7B1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0128 (Fisher's exact test), Q value = 0.11

Table S12870.  Gene #1210: 'CYP7B1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
CYP7B1 MUTATED 15 5 1 0
CYP7B1 WILD-TYPE 163 178 100 20

Figure S3364.  Get High-res Image Gene #1210: 'CYP7B1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'CYP7B1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0435 (Fisher's exact test), Q value = 0.22

Table S12871.  Gene #1210: 'CYP7B1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
CYP7B1 MUTATED 5 1 10
CYP7B1 WILD-TYPE 82 79 90

Figure S3365.  Get High-res Image Gene #1210: 'CYP7B1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'CYP7B1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.139 (Fisher's exact test), Q value = 0.41

Table S12872.  Gene #1210: 'CYP7B1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
CYP7B1 MUTATED 1 10 9
CYP7B1 WILD-TYPE 88 150 129
'CYP7B1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.317 (Fisher's exact test), Q value = 0.64

Table S12873.  Gene #1210: 'CYP7B1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
CYP7B1 MUTATED 8 10 2
CYP7B1 WILD-TYPE 174 123 70
'CYP7B1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0657 (Fisher's exact test), Q value = 0.28

Table S12874.  Gene #1210: 'CYP7B1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
CYP7B1 MUTATED 1 6 7 7
CYP7B1 WILD-TYPE 111 90 85 179
'CYP7B1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00672 (Fisher's exact test), Q value = 0.075

Table S12875.  Gene #1210: 'CYP7B1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
CYP7B1 MUTATED 2 3 5 1 2 0 8
CYP7B1 WILD-TYPE 58 47 44 39 61 125 91

Figure S3366.  Get High-res Image Gene #1210: 'CYP7B1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CYP7B1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.235 (Fisher's exact test), Q value = 0.56

Table S12876.  Gene #1210: 'CYP7B1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
CYP7B1 MUTATED 7 4 0 8
CYP7B1 WILD-TYPE 123 74 68 188
'CYP7B1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.447 (Fisher's exact test), Q value = 0.77

Table S12877.  Gene #1210: 'CYP7B1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
CYP7B1 MUTATED 2 4 1 3 6 1 0 0 2
CYP7B1 WILD-TYPE 38 58 27 77 63 47 43 28 72
'CYP7B1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.301 (Fisher's exact test), Q value = 0.63

Table S12878.  Gene #1210: 'CYP7B1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
CYP7B1 MUTATED 2 0 1 2
CYP7B1 WILD-TYPE 31 31 26 17
'CYP7B1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S12879.  Gene #1210: 'CYP7B1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
CYP7B1 MUTATED 3 0 1 1
CYP7B1 WILD-TYPE 51 10 23 21
'ZNF605 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0378 (Fisher's exact test), Q value = 0.2

Table S12880.  Gene #1211: 'ZNF605 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ZNF605 MUTATED 6 1 0 1
ZNF605 WILD-TYPE 172 182 101 19

Figure S3367.  Get High-res Image Gene #1211: 'ZNF605 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ZNF605 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.444 (Fisher's exact test), Q value = 0.77

Table S12881.  Gene #1211: 'ZNF605 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ZNF605 MUTATED 4 1 2
ZNF605 WILD-TYPE 83 79 98
'ZNF605 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.615 (Fisher's exact test), Q value = 0.91

Table S12882.  Gene #1211: 'ZNF605 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ZNF605 MUTATED 1 2 4
ZNF605 WILD-TYPE 88 158 134
'ZNF605 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.775 (Fisher's exact test), Q value = 1

Table S12883.  Gene #1211: 'ZNF605 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ZNF605 MUTATED 3 2 2
ZNF605 WILD-TYPE 179 131 70
'ZNF605 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.102 (Fisher's exact test), Q value = 0.35

Table S12884.  Gene #1211: 'ZNF605 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ZNF605 MUTATED 1 4 2 1
ZNF605 WILD-TYPE 111 92 90 185
'ZNF605 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0299 (Fisher's exact test), Q value = 0.18

Table S12885.  Gene #1211: 'ZNF605 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ZNF605 MUTATED 1 2 3 1 0 0 1
ZNF605 WILD-TYPE 59 48 46 39 63 125 98

Figure S3368.  Get High-res Image Gene #1211: 'ZNF605 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ZNF605 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.913 (Fisher's exact test), Q value = 1

Table S12886.  Gene #1211: 'ZNF605 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ZNF605 MUTATED 2 2 1 3
ZNF605 WILD-TYPE 128 76 67 193
'ZNF605 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.435 (Fisher's exact test), Q value = 0.76

Table S12887.  Gene #1211: 'ZNF605 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ZNF605 MUTATED 2 1 1 0 2 0 1 0 1
ZNF605 WILD-TYPE 38 61 27 80 67 48 42 28 73
'ZNF605 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.254 (Fisher's exact test), Q value = 0.58

Table S12888.  Gene #1211: 'ZNF605 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
ZNF605 MUTATED 2 0 0 1
ZNF605 WILD-TYPE 31 31 27 18
'ZNF605 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S12889.  Gene #1211: 'ZNF605 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
ZNF605 MUTATED 2 0 1 0
ZNF605 WILD-TYPE 52 10 23 22
'ITPR2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0104 (Fisher's exact test), Q value = 0.098

Table S12890.  Gene #1212: 'ITPR2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ITPR2 MUTATED 2 0 1 5
ITPR2 WILD-TYPE 44 58 63 38

Figure S3369.  Get High-res Image Gene #1212: 'ITPR2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'ITPR2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.598 (Fisher's exact test), Q value = 0.9

Table S12891.  Gene #1212: 'ITPR2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ITPR2 MUTATED 3 3 2
ITPR2 WILD-TYPE 48 80 75
'ITPR2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00209 (Fisher's exact test), Q value = 0.038

Table S12892.  Gene #1212: 'ITPR2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ITPR2 MUTATED 20 5 2 1
ITPR2 WILD-TYPE 158 178 99 19

Figure S3370.  Get High-res Image Gene #1212: 'ITPR2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ITPR2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.265 (Fisher's exact test), Q value = 0.59

Table S12893.  Gene #1212: 'ITPR2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ITPR2 MUTATED 9 3 8
ITPR2 WILD-TYPE 78 77 92
'ITPR2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0759 (Fisher's exact test), Q value = 0.3

Table S12894.  Gene #1212: 'ITPR2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ITPR2 MUTATED 5 5 13
ITPR2 WILD-TYPE 84 155 125
'ITPR2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.718 (Fisher's exact test), Q value = 0.99

Table S12895.  Gene #1212: 'ITPR2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ITPR2 MUTATED 13 7 3
ITPR2 WILD-TYPE 169 126 69
'ITPR2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.688 (Fisher's exact test), Q value = 0.97

Table S12896.  Gene #1212: 'ITPR2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ITPR2 MUTATED 5 8 5 10
ITPR2 WILD-TYPE 107 88 87 176
'ITPR2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.117 (Fisher's exact test), Q value = 0.38

Table S12897.  Gene #1212: 'ITPR2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ITPR2 MUTATED 4 3 7 3 2 3 6
ITPR2 WILD-TYPE 56 47 42 37 61 122 93
'ITPR2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.707 (Fisher's exact test), Q value = 0.98

Table S12898.  Gene #1212: 'ITPR2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ITPR2 MUTATED 10 3 3 11
ITPR2 WILD-TYPE 120 75 65 185
'ITPR2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0956 (Fisher's exact test), Q value = 0.34

Table S12899.  Gene #1212: 'ITPR2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ITPR2 MUTATED 5 4 3 2 6 0 3 0 4
ITPR2 WILD-TYPE 35 58 25 78 63 48 40 28 70
'ITPR2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0859 (Fisher's exact test), Q value = 0.32

Table S12900.  Gene #1212: 'ITPR2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
ITPR2 MUTATED 1 1 0 3
ITPR2 WILD-TYPE 32 30 27 16
'ITPR2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.693 (Fisher's exact test), Q value = 0.97

Table S12901.  Gene #1212: 'ITPR2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
ITPR2 MUTATED 2 1 1 1
ITPR2 WILD-TYPE 52 9 23 21
'ZBTB33 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.274 (Fisher's exact test), Q value = 0.6

Table S12902.  Gene #1213: 'ZBTB33 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ZBTB33 MUTATED 2 0 1 0
ZBTB33 WILD-TYPE 44 58 63 43
'ZBTB33 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.253 (Fisher's exact test), Q value = 0.58

Table S12903.  Gene #1213: 'ZBTB33 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ZBTB33 MUTATED 2 1 0
ZBTB33 WILD-TYPE 49 82 77
'ZBTB33 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00868 (Fisher's exact test), Q value = 0.087

Table S12904.  Gene #1213: 'ZBTB33 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ZBTB33 MUTATED 12 1 3 0
ZBTB33 WILD-TYPE 166 182 98 20

Figure S3371.  Get High-res Image Gene #1213: 'ZBTB33 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ZBTB33 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.25 (Fisher's exact test), Q value = 0.58

Table S12905.  Gene #1213: 'ZBTB33 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ZBTB33 MUTATED 2 2 7
ZBTB33 WILD-TYPE 85 78 93
'ZBTB33 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.347 (Fisher's exact test), Q value = 0.68

Table S12906.  Gene #1213: 'ZBTB33 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ZBTB33 MUTATED 3 4 8
ZBTB33 WILD-TYPE 86 156 130
'ZBTB33 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.61 (Fisher's exact test), Q value = 0.91

Table S12907.  Gene #1213: 'ZBTB33 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ZBTB33 MUTATED 6 7 2
ZBTB33 WILD-TYPE 176 126 70
'ZBTB33 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.471 (Fisher's exact test), Q value = 0.8

Table S12908.  Gene #1213: 'ZBTB33 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ZBTB33 MUTATED 2 5 4 5
ZBTB33 WILD-TYPE 110 91 88 181
'ZBTB33 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00022 (Fisher's exact test), Q value = 0.0088

Table S12909.  Gene #1213: 'ZBTB33 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ZBTB33 MUTATED 0 4 6 0 1 0 5
ZBTB33 WILD-TYPE 60 46 43 40 62 125 94

Figure S3372.  Get High-res Image Gene #1213: 'ZBTB33 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ZBTB33 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0965 (Fisher's exact test), Q value = 0.34

Table S12910.  Gene #1213: 'ZBTB33 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ZBTB33 MUTATED 8 1 0 7
ZBTB33 WILD-TYPE 122 77 68 189
'ZBTB33 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.351 (Fisher's exact test), Q value = 0.68

Table S12911.  Gene #1213: 'ZBTB33 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ZBTB33 MUTATED 2 2 1 2 6 0 1 1 1
ZBTB33 WILD-TYPE 38 60 27 78 63 48 42 27 73
'ZBTB33 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00438 (Fisher's exact test), Q value = 0.061

Table S12912.  Gene #1213: 'ZBTB33 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
ZBTB33 MUTATED 0 0 0 3
ZBTB33 WILD-TYPE 33 31 27 16

Figure S3373.  Get High-res Image Gene #1213: 'ZBTB33 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'ZBTB33 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S12913.  Gene #1213: 'ZBTB33 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
ZBTB33 MUTATED 2 0 1 0
ZBTB33 WILD-TYPE 52 10 23 22
'PHF21A MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0264 (Fisher's exact test), Q value = 0.16

Table S12914.  Gene #1214: 'PHF21A MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
PHF21A MUTATED 3 0 0 2
PHF21A WILD-TYPE 43 58 64 41

Figure S3374.  Get High-res Image Gene #1214: 'PHF21A MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'PHF21A MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00615 (Fisher's exact test), Q value = 0.072

Table S12915.  Gene #1214: 'PHF21A MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
PHF21A MUTATED 4 0 1
PHF21A WILD-TYPE 47 83 76

Figure S3375.  Get High-res Image Gene #1214: 'PHF21A MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'PHF21A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00113 (Fisher's exact test), Q value = 0.027

Table S12916.  Gene #1214: 'PHF21A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
PHF21A MUTATED 11 0 1 0
PHF21A WILD-TYPE 167 183 100 20

Figure S3376.  Get High-res Image Gene #1214: 'PHF21A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'PHF21A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.71 (Fisher's exact test), Q value = 0.98

Table S12917.  Gene #1214: 'PHF21A MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
PHF21A MUTATED 3 1 3
PHF21A WILD-TYPE 84 79 97
'PHF21A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.193 (Fisher's exact test), Q value = 0.5

Table S12918.  Gene #1214: 'PHF21A MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
PHF21A MUTATED 1 2 6
PHF21A WILD-TYPE 88 158 132
'PHF21A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.742 (Fisher's exact test), Q value = 1

Table S12919.  Gene #1214: 'PHF21A MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
PHF21A MUTATED 5 2 2
PHF21A WILD-TYPE 177 131 70
'PHF21A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.145 (Fisher's exact test), Q value = 0.42

Table S12920.  Gene #1214: 'PHF21A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
PHF21A MUTATED 0 4 3 5
PHF21A WILD-TYPE 112 92 89 181
'PHF21A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0187 (Fisher's exact test), Q value = 0.14

Table S12921.  Gene #1214: 'PHF21A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
PHF21A MUTATED 1 1 5 0 0 1 4
PHF21A WILD-TYPE 59 49 44 40 63 124 95

Figure S3377.  Get High-res Image Gene #1214: 'PHF21A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'PHF21A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.281 (Fisher's exact test), Q value = 0.61

Table S12922.  Gene #1214: 'PHF21A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
PHF21A MUTATED 2 2 0 8
PHF21A WILD-TYPE 128 76 68 188
'PHF21A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.108 (Fisher's exact test), Q value = 0.36

Table S12923.  Gene #1214: 'PHF21A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
PHF21A MUTATED 0 2 1 1 5 0 0 2 1
PHF21A WILD-TYPE 40 60 27 79 64 48 43 26 73
'INADL MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.371 (Fisher's exact test), Q value = 0.7

Table S12924.  Gene #1215: 'INADL MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
INADL MUTATED 2 1 0 1
INADL WILD-TYPE 44 57 64 42
'INADL MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.557 (Fisher's exact test), Q value = 0.87

Table S12925.  Gene #1215: 'INADL MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
INADL MUTATED 2 1 1
INADL WILD-TYPE 49 82 76
'INADL MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0013 (Fisher's exact test), Q value = 0.029

Table S12926.  Gene #1215: 'INADL MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
INADL MUTATED 13 2 0 1
INADL WILD-TYPE 165 181 101 19

Figure S3378.  Get High-res Image Gene #1215: 'INADL MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'INADL MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0462 (Fisher's exact test), Q value = 0.23

Table S12927.  Gene #1215: 'INADL MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
INADL MUTATED 5 0 6
INADL WILD-TYPE 82 80 94

Figure S3379.  Get High-res Image Gene #1215: 'INADL MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'INADL MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.478 (Fisher's exact test), Q value = 0.81

Table S12928.  Gene #1215: 'INADL MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
INADL MUTATED 3 4 7
INADL WILD-TYPE 86 156 131
'INADL MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.393 (Fisher's exact test), Q value = 0.72

Table S12929.  Gene #1215: 'INADL MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
INADL MUTATED 9 4 1
INADL WILD-TYPE 173 129 71
'INADL MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0863 (Fisher's exact test), Q value = 0.32

Table S12930.  Gene #1215: 'INADL MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
INADL MUTATED 1 7 3 5
INADL WILD-TYPE 111 89 89 181
'INADL MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0811 (Fisher's exact test), Q value = 0.31

Table S12931.  Gene #1215: 'INADL MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
INADL MUTATED 2 2 5 2 1 1 3
INADL WILD-TYPE 58 48 44 38 62 124 96
'INADL MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.548 (Fisher's exact test), Q value = 0.87

Table S12932.  Gene #1215: 'INADL MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
INADL MUTATED 7 2 1 6
INADL WILD-TYPE 123 76 67 190
'INADL MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.568 (Fisher's exact test), Q value = 0.88

Table S12933.  Gene #1215: 'INADL MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
INADL MUTATED 2 3 0 1 5 1 2 0 2
INADL WILD-TYPE 38 59 28 79 64 47 41 28 72
'INADL MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.593 (Fisher's exact test), Q value = 0.9

Table S12934.  Gene #1215: 'INADL MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
INADL MUTATED 2 0 1 1
INADL WILD-TYPE 31 31 26 18
'INADL MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S12935.  Gene #1215: 'INADL MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
INADL MUTATED 2 0 1 1
INADL WILD-TYPE 52 10 23 21
'DDX17 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.065 (Fisher's exact test), Q value = 0.28

Table S12936.  Gene #1216: 'DDX17 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
DDX17 MUTATED 1 0 0 2
DDX17 WILD-TYPE 45 58 64 41
'DDX17 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0135 (Fisher's exact test), Q value = 0.11

Table S12937.  Gene #1216: 'DDX17 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
DDX17 MUTATED 3 0 0
DDX17 WILD-TYPE 48 83 77

Figure S3380.  Get High-res Image Gene #1216: 'DDX17 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'DDX17 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0244 (Fisher's exact test), Q value = 0.16

Table S12938.  Gene #1216: 'DDX17 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
DDX17 MUTATED 7 0 1 0
DDX17 WILD-TYPE 171 183 100 20

Figure S3381.  Get High-res Image Gene #1216: 'DDX17 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'DDX17 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.196 (Fisher's exact test), Q value = 0.5

Table S12939.  Gene #1216: 'DDX17 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
DDX17 MUTATED 1 0 4
DDX17 WILD-TYPE 86 80 96
'DDX17 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.902 (Fisher's exact test), Q value = 1

Table S12940.  Gene #1216: 'DDX17 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
DDX17 MUTATED 1 4 3
DDX17 WILD-TYPE 88 156 135
'DDX17 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.64 (Fisher's exact test), Q value = 0.93

Table S12941.  Gene #1216: 'DDX17 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
DDX17 MUTATED 3 4 1
DDX17 WILD-TYPE 179 129 71
'DDX17 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.29 (Fisher's exact test), Q value = 0.62

Table S12942.  Gene #1216: 'DDX17 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
DDX17 MUTATED 0 3 2 3
DDX17 WILD-TYPE 112 93 90 183
'DDX17 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00186 (Fisher's exact test), Q value = 0.036

Table S12943.  Gene #1216: 'DDX17 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
DDX17 MUTATED 0 0 4 0 0 0 4
DDX17 WILD-TYPE 60 50 45 40 63 125 95

Figure S3382.  Get High-res Image Gene #1216: 'DDX17 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'DDX17 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.829 (Fisher's exact test), Q value = 1

Table S12944.  Gene #1216: 'DDX17 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
DDX17 MUTATED 3 1 0 3
DDX17 WILD-TYPE 127 77 68 193
'DDX17 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.264 (Fisher's exact test), Q value = 0.59

Table S12945.  Gene #1216: 'DDX17 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
DDX17 MUTATED 0 1 0 1 4 0 1 0 0
DDX17 WILD-TYPE 40 61 28 79 65 48 42 28 74
'DDX17 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0241 (Fisher's exact test), Q value = 0.16

Table S12946.  Gene #1216: 'DDX17 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
DDX17 MUTATED 1 0 0 3
DDX17 WILD-TYPE 32 31 27 16

Figure S3383.  Get High-res Image Gene #1216: 'DDX17 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'DDX17 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.67 (Fisher's exact test), Q value = 0.95

Table S12947.  Gene #1216: 'DDX17 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
DDX17 MUTATED 2 0 2 0
DDX17 WILD-TYPE 52 10 22 22
'DMXL2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S12948.  Gene #1217: 'DMXL2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
DMXL2 MUTATED 9 0 0 5
DMXL2 WILD-TYPE 37 58 64 38

Figure S3384.  Get High-res Image Gene #1217: 'DMXL2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'DMXL2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00312 (Fisher's exact test), Q value = 0.05

Table S12949.  Gene #1217: 'DMXL2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
DMXL2 MUTATED 9 2 3
DMXL2 WILD-TYPE 42 81 74

Figure S3385.  Get High-res Image Gene #1217: 'DMXL2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'DMXL2 MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S12950.  Gene #1217: 'DMXL2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
DMXL2 MUTATED 29 7 1 0
DMXL2 WILD-TYPE 149 176 100 20

Figure S3386.  Get High-res Image Gene #1217: 'DMXL2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'DMXL2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.09 (Fisher's exact test), Q value = 0.33

Table S12951.  Gene #1217: 'DMXL2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
DMXL2 MUTATED 8 3 13
DMXL2 WILD-TYPE 79 77 87
'DMXL2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.279 (Fisher's exact test), Q value = 0.61

Table S12952.  Gene #1217: 'DMXL2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
DMXL2 MUTATED 4 15 14
DMXL2 WILD-TYPE 85 145 124
'DMXL2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.482 (Fisher's exact test), Q value = 0.81

Table S12953.  Gene #1217: 'DMXL2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
DMXL2 MUTATED 19 9 5
DMXL2 WILD-TYPE 163 124 67
'DMXL2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0422 (Fisher's exact test), Q value = 0.22

Table S12954.  Gene #1217: 'DMXL2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
DMXL2 MUTATED 3 7 12 15
DMXL2 WILD-TYPE 109 89 80 171

Figure S3387.  Get High-res Image Gene #1217: 'DMXL2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'DMXL2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 2e-04 (Fisher's exact test), Q value = 0.0083

Table S12955.  Gene #1217: 'DMXL2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
DMXL2 MUTATED 2 3 10 1 6 2 13
DMXL2 WILD-TYPE 58 47 39 39 57 123 86

Figure S3388.  Get High-res Image Gene #1217: 'DMXL2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'DMXL2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.05 (Fisher's exact test), Q value = 0.24

Table S12956.  Gene #1217: 'DMXL2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
DMXL2 MUTATED 8 10 1 17
DMXL2 WILD-TYPE 122 68 67 179

Figure S3389.  Get High-res Image Gene #1217: 'DMXL2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'DMXL2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0323 (Fisher's exact test), Q value = 0.18

Table S12957.  Gene #1217: 'DMXL2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
DMXL2 MUTATED 4 9 2 5 10 2 1 2 1
DMXL2 WILD-TYPE 36 53 26 75 59 46 42 26 73

Figure S3390.  Get High-res Image Gene #1217: 'DMXL2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'DMXL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0651 (Fisher's exact test), Q value = 0.28

Table S12958.  Gene #1217: 'DMXL2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
DMXL2 MUTATED 2 3 0 4
DMXL2 WILD-TYPE 31 28 27 15
'DMXL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.206 (Fisher's exact test), Q value = 0.51

Table S12959.  Gene #1217: 'DMXL2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
DMXL2 MUTATED 7 1 0 1
DMXL2 WILD-TYPE 47 9 24 21
'DPAGT1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.593 (Fisher's exact test), Q value = 0.9

Table S12960.  Gene #1218: 'DPAGT1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
DPAGT1 MUTATED 5 2 1 0
DPAGT1 WILD-TYPE 173 181 100 20
'DPAGT1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S12961.  Gene #1218: 'DPAGT1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
DPAGT1 MUTATED 2 2 2
DPAGT1 WILD-TYPE 85 78 98
'DPAGT1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.306 (Fisher's exact test), Q value = 0.64

Table S12962.  Gene #1218: 'DPAGT1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
DPAGT1 MUTATED 0 3 4
DPAGT1 WILD-TYPE 89 157 134
'DPAGT1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.773 (Fisher's exact test), Q value = 1

Table S12963.  Gene #1218: 'DPAGT1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
DPAGT1 MUTATED 3 2 2
DPAGT1 WILD-TYPE 179 131 70
'DPAGT1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.696 (Fisher's exact test), Q value = 0.97

Table S12964.  Gene #1218: 'DPAGT1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
DPAGT1 MUTATED 3 1 2 2
DPAGT1 WILD-TYPE 109 95 90 184
'DPAGT1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.452 (Fisher's exact test), Q value = 0.78

Table S12965.  Gene #1218: 'DPAGT1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
DPAGT1 MUTATED 3 1 1 0 1 1 1
DPAGT1 WILD-TYPE 57 49 48 40 62 124 98
'DPAGT1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.205 (Fisher's exact test), Q value = 0.51

Table S12966.  Gene #1218: 'DPAGT1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
DPAGT1 MUTATED 5 1 0 2
DPAGT1 WILD-TYPE 125 77 68 194
'DPAGT1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.322 (Fisher's exact test), Q value = 0.65

Table S12967.  Gene #1218: 'DPAGT1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
DPAGT1 MUTATED 0 2 0 2 1 3 0 0 0
DPAGT1 WILD-TYPE 40 60 28 78 68 45 43 28 74
'SLC38A9 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0727 (Fisher's exact test), Q value = 0.29

Table S12968.  Gene #1219: 'SLC38A9 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
SLC38A9 MUTATED 2 0 0 2
SLC38A9 WILD-TYPE 44 58 64 41
'SLC38A9 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.555 (Fisher's exact test), Q value = 0.87

Table S12969.  Gene #1219: 'SLC38A9 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
SLC38A9 MUTATED 2 1 1
SLC38A9 WILD-TYPE 49 82 76
'SLC38A9 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00023 (Fisher's exact test), Q value = 0.0091

Table S12970.  Gene #1219: 'SLC38A9 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
SLC38A9 MUTATED 11 0 0 0
SLC38A9 WILD-TYPE 167 183 101 20

Figure S3391.  Get High-res Image Gene #1219: 'SLC38A9 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'SLC38A9 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0783 (Fisher's exact test), Q value = 0.3

Table S12971.  Gene #1219: 'SLC38A9 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
SLC38A9 MUTATED 5 0 3
SLC38A9 WILD-TYPE 82 80 97
'SLC38A9 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.319 (Fisher's exact test), Q value = 0.65

Table S12972.  Gene #1219: 'SLC38A9 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
SLC38A9 MUTATED 1 3 6
SLC38A9 WILD-TYPE 88 157 132
'SLC38A9 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.918 (Fisher's exact test), Q value = 1

Table S12973.  Gene #1219: 'SLC38A9 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
SLC38A9 MUTATED 5 4 1
SLC38A9 WILD-TYPE 177 129 71
'SLC38A9 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0694 (Fisher's exact test), Q value = 0.28

Table S12974.  Gene #1219: 'SLC38A9 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
SLC38A9 MUTATED 0 5 3 4
SLC38A9 WILD-TYPE 112 91 89 182
'SLC38A9 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00449 (Fisher's exact test), Q value = 0.061

Table S12975.  Gene #1219: 'SLC38A9 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
SLC38A9 MUTATED 1 1 6 0 0 1 3
SLC38A9 WILD-TYPE 59 49 43 40 63 124 96

Figure S3392.  Get High-res Image Gene #1219: 'SLC38A9 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'SLC38A9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.599 (Fisher's exact test), Q value = 0.9

Table S12976.  Gene #1219: 'SLC38A9 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
SLC38A9 MUTATED 4 2 0 6
SLC38A9 WILD-TYPE 126 76 68 190
'SLC38A9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0874 (Fisher's exact test), Q value = 0.32

Table S12977.  Gene #1219: 'SLC38A9 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
SLC38A9 MUTATED 1 3 0 1 6 0 0 0 1
SLC38A9 WILD-TYPE 39 59 28 79 63 48 43 28 73
'HIST2H2AC MUTATION STATUS' versus 'CN_CNMF'

P value = 0.272 (Fisher's exact test), Q value = 0.6

Table S12978.  Gene #1220: 'HIST2H2AC MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
HIST2H2AC MUTATED 2 3 0 1
HIST2H2AC WILD-TYPE 176 180 101 19
'HIST2H2AC MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.14 (Fisher's exact test), Q value = 0.42

Table S12979.  Gene #1220: 'HIST2H2AC MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
HIST2H2AC MUTATED 4 0 2
HIST2H2AC WILD-TYPE 83 80 98
'HIST2H2AC MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.792 (Fisher's exact test), Q value = 1

Table S12980.  Gene #1220: 'HIST2H2AC MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
HIST2H2AC MUTATED 0 2 1
HIST2H2AC WILD-TYPE 89 158 137
'HIST2H2AC MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.422 (Fisher's exact test), Q value = 0.75

Table S12981.  Gene #1220: 'HIST2H2AC MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
HIST2H2AC MUTATED 2 0 1
HIST2H2AC WILD-TYPE 180 133 71
'HIST2H2AC MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00765 (Fisher's exact test), Q value = 0.082

Table S12982.  Gene #1220: 'HIST2H2AC MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
HIST2H2AC MUTATED 0 3 3 0
HIST2H2AC WILD-TYPE 112 93 89 186

Figure S3393.  Get High-res Image Gene #1220: 'HIST2H2AC MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'HIST2H2AC MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0321 (Fisher's exact test), Q value = 0.18

Table S12983.  Gene #1220: 'HIST2H2AC MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
HIST2H2AC MUTATED 0 1 2 1 2 0 0
HIST2H2AC WILD-TYPE 60 49 47 39 61 125 99

Figure S3394.  Get High-res Image Gene #1220: 'HIST2H2AC MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'HIST2H2AC MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00379 (Fisher's exact test), Q value = 0.056

Table S12984.  Gene #1220: 'HIST2H2AC MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
HIST2H2AC MUTATED 2 4 0 0
HIST2H2AC WILD-TYPE 128 74 68 196

Figure S3395.  Get High-res Image Gene #1220: 'HIST2H2AC MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'HIST2H2AC MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0323 (Fisher's exact test), Q value = 0.18

Table S12985.  Gene #1220: 'HIST2H2AC MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
HIST2H2AC MUTATED 0 4 1 1 0 0 0 0 0
HIST2H2AC WILD-TYPE 40 58 27 79 69 48 43 28 74

Figure S3396.  Get High-res Image Gene #1220: 'HIST2H2AC MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'HIST2H2AC MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.416 (Fisher's exact test), Q value = 0.74

Table S12986.  Gene #1220: 'HIST2H2AC MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
HIST2H2AC MUTATED 0 2 1 0
HIST2H2AC WILD-TYPE 33 29 26 19
'HIST2H2AC MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00512 (Fisher's exact test), Q value = 0.064

Table S12987.  Gene #1220: 'HIST2H2AC MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
HIST2H2AC MUTATED 0 2 0 1
HIST2H2AC WILD-TYPE 54 8 24 21

Figure S3397.  Get High-res Image Gene #1220: 'HIST2H2AC MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

'SLCO1B1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0412 (Fisher's exact test), Q value = 0.21

Table S12988.  Gene #1221: 'SLCO1B1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
SLCO1B1 MUTATED 2 0 1 4
SLCO1B1 WILD-TYPE 44 58 63 39

Figure S3398.  Get High-res Image Gene #1221: 'SLCO1B1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'SLCO1B1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.431 (Fisher's exact test), Q value = 0.76

Table S12989.  Gene #1221: 'SLCO1B1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
SLCO1B1 MUTATED 3 3 1
SLCO1B1 WILD-TYPE 48 80 76
'SLCO1B1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.199 (Fisher's exact test), Q value = 0.5

Table S12990.  Gene #1221: 'SLCO1B1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
SLCO1B1 MUTATED 13 5 5 0
SLCO1B1 WILD-TYPE 165 178 96 20
'SLCO1B1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.636 (Fisher's exact test), Q value = 0.93

Table S12991.  Gene #1221: 'SLCO1B1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
SLCO1B1 MUTATED 6 5 4
SLCO1B1 WILD-TYPE 81 75 96
'SLCO1B1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.865 (Fisher's exact test), Q value = 1

Table S12992.  Gene #1221: 'SLCO1B1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
SLCO1B1 MUTATED 3 8 7
SLCO1B1 WILD-TYPE 86 152 131
'SLCO1B1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.536 (Fisher's exact test), Q value = 0.86

Table S12993.  Gene #1221: 'SLCO1B1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
SLCO1B1 MUTATED 11 5 2
SLCO1B1 WILD-TYPE 171 128 70
'SLCO1B1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.609 (Fisher's exact test), Q value = 0.91

Table S12994.  Gene #1221: 'SLCO1B1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
SLCO1B1 MUTATED 8 3 4 8
SLCO1B1 WILD-TYPE 104 93 88 178
'SLCO1B1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0346 (Fisher's exact test), Q value = 0.19

Table S12995.  Gene #1221: 'SLCO1B1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
SLCO1B1 MUTATED 6 1 2 4 3 1 6
SLCO1B1 WILD-TYPE 54 49 47 36 60 124 93

Figure S3399.  Get High-res Image Gene #1221: 'SLCO1B1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'SLCO1B1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.407 (Fisher's exact test), Q value = 0.73

Table S12996.  Gene #1221: 'SLCO1B1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
SLCO1B1 MUTATED 4 6 4 8
SLCO1B1 WILD-TYPE 126 72 64 188
'SLCO1B1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0852 (Fisher's exact test), Q value = 0.32

Table S12997.  Gene #1221: 'SLCO1B1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
SLCO1B1 MUTATED 2 6 1 3 6 1 3 0 0
SLCO1B1 WILD-TYPE 38 56 27 77 63 47 40 28 74
'SLCO1B1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.55 (Fisher's exact test), Q value = 0.87

Table S12998.  Gene #1221: 'SLCO1B1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
SLCO1B1 MUTATED 1 3 1 2
SLCO1B1 WILD-TYPE 32 28 26 17
'SLCO1B1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.302 (Fisher's exact test), Q value = 0.63

Table S12999.  Gene #1221: 'SLCO1B1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
SLCO1B1 MUTATED 3 2 1 1
SLCO1B1 WILD-TYPE 51 8 23 21
'LBP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.172 (Fisher's exact test), Q value = 0.47

Table S13000.  Gene #1222: 'LBP MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
LBP MUTATED 3 1 4 0
LBP WILD-TYPE 175 182 97 20
'LBP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.568 (Fisher's exact test), Q value = 0.88

Table S13001.  Gene #1222: 'LBP MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
LBP MUTATED 1 3 3
LBP WILD-TYPE 86 77 97
'LBP MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0287 (Fisher's exact test), Q value = 0.17

Table S13002.  Gene #1222: 'LBP MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
LBP MUTATED 1 0 5
LBP WILD-TYPE 88 160 133

Figure S3400.  Get High-res Image Gene #1222: 'LBP MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'LBP MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0405 (Fisher's exact test), Q value = 0.21

Table S13003.  Gene #1222: 'LBP MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
LBP MUTATED 6 0 0
LBP WILD-TYPE 176 133 72

Figure S3401.  Get High-res Image Gene #1222: 'LBP MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'LBP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0316 (Fisher's exact test), Q value = 0.18

Table S13004.  Gene #1222: 'LBP MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
LBP MUTATED 2 3 3 0
LBP WILD-TYPE 110 93 89 186

Figure S3402.  Get High-res Image Gene #1222: 'LBP MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'LBP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.054 (Fisher's exact test), Q value = 0.25

Table S13005.  Gene #1222: 'LBP MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
LBP MUTATED 1 2 3 0 1 0 1
LBP WILD-TYPE 59 48 46 40 62 125 98
'LBP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0294 (Fisher's exact test), Q value = 0.18

Table S13006.  Gene #1222: 'LBP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
LBP MUTATED 6 0 1 1
LBP WILD-TYPE 124 78 67 195

Figure S3403.  Get High-res Image Gene #1222: 'LBP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'LBP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.318 (Fisher's exact test), Q value = 0.65

Table S13007.  Gene #1222: 'LBP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
LBP MUTATED 0 3 1 1 1 0 1 1 0
LBP WILD-TYPE 40 59 27 79 68 48 42 27 74
'LBP MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.628 (Fisher's exact test), Q value = 0.92

Table S13008.  Gene #1222: 'LBP MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
LBP MUTATED 0 1 1 1
LBP WILD-TYPE 33 30 26 18
'LBP MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S13009.  Gene #1222: 'LBP MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
LBP MUTATED 2 0 1 0
LBP WILD-TYPE 52 10 23 22
'THUMPD3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0651 (Fisher's exact test), Q value = 0.28

Table S13010.  Gene #1223: 'THUMPD3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
THUMPD3 MUTATED 1 0 0 2
THUMPD3 WILD-TYPE 45 58 64 41
'THUMPD3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S13011.  Gene #1223: 'THUMPD3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
THUMPD3 MUTATED 1 1 1
THUMPD3 WILD-TYPE 50 82 76
'THUMPD3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0231 (Fisher's exact test), Q value = 0.15

Table S13012.  Gene #1223: 'THUMPD3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
THUMPD3 MUTATED 7 1 2 2
THUMPD3 WILD-TYPE 171 182 99 18

Figure S3404.  Get High-res Image Gene #1223: 'THUMPD3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'THUMPD3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.127 (Fisher's exact test), Q value = 0.4

Table S13013.  Gene #1223: 'THUMPD3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
THUMPD3 MUTATED 6 1 2
THUMPD3 WILD-TYPE 81 79 98
'THUMPD3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0418 (Fisher's exact test), Q value = 0.22

Table S13014.  Gene #1223: 'THUMPD3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
THUMPD3 MUTATED 0 4 8
THUMPD3 WILD-TYPE 89 156 130

Figure S3405.  Get High-res Image Gene #1223: 'THUMPD3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'THUMPD3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.245 (Fisher's exact test), Q value = 0.57

Table S13015.  Gene #1223: 'THUMPD3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
THUMPD3 MUTATED 7 5 0
THUMPD3 WILD-TYPE 175 128 72
'THUMPD3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.233 (Fisher's exact test), Q value = 0.55

Table S13016.  Gene #1223: 'THUMPD3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
THUMPD3 MUTATED 1 4 4 3
THUMPD3 WILD-TYPE 111 92 88 183
'THUMPD3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0991 (Fisher's exact test), Q value = 0.35

Table S13017.  Gene #1223: 'THUMPD3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
THUMPD3 MUTATED 1 2 2 2 3 0 2
THUMPD3 WILD-TYPE 59 48 47 38 60 125 97
'THUMPD3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.438 (Fisher's exact test), Q value = 0.77

Table S13018.  Gene #1223: 'THUMPD3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
THUMPD3 MUTATED 4 3 0 4
THUMPD3 WILD-TYPE 126 75 68 192
'THUMPD3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.074 (Fisher's exact test), Q value = 0.29

Table S13019.  Gene #1223: 'THUMPD3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
THUMPD3 MUTATED 1 3 3 0 2 0 1 0 1
THUMPD3 WILD-TYPE 39 59 25 80 67 48 42 28 73
'THUMPD3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0395 (Fisher's exact test), Q value = 0.21

Table S13020.  Gene #1223: 'THUMPD3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
THUMPD3 MUTATED 0 3 0 0
THUMPD3 WILD-TYPE 33 28 27 19

Figure S3406.  Get High-res Image Gene #1223: 'THUMPD3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'THUMPD3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.381 (Fisher's exact test), Q value = 0.71

Table S13021.  Gene #1223: 'THUMPD3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
THUMPD3 MUTATED 2 1 0 0
THUMPD3 WILD-TYPE 52 9 24 22
'GPSM2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0105 (Fisher's exact test), Q value = 0.098

Table S13022.  Gene #1224: 'GPSM2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
GPSM2 MUTATED 10 2 0 1
GPSM2 WILD-TYPE 168 181 101 19

Figure S3407.  Get High-res Image Gene #1224: 'GPSM2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'GPSM2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.311 (Fisher's exact test), Q value = 0.64

Table S13023.  Gene #1224: 'GPSM2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
GPSM2 MUTATED 5 1 5
GPSM2 WILD-TYPE 82 79 95
'GPSM2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.808 (Fisher's exact test), Q value = 1

Table S13024.  Gene #1224: 'GPSM2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
GPSM2 MUTATED 3 4 5
GPSM2 WILD-TYPE 86 156 133
'GPSM2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.501 (Fisher's exact test), Q value = 0.83

Table S13025.  Gene #1224: 'GPSM2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
GPSM2 MUTATED 4 6 2
GPSM2 WILD-TYPE 178 127 70
'GPSM2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0851 (Fisher's exact test), Q value = 0.32

Table S13026.  Gene #1224: 'GPSM2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
GPSM2 MUTATED 1 6 3 3
GPSM2 WILD-TYPE 111 90 89 183
'GPSM2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00601 (Fisher's exact test), Q value = 0.071

Table S13027.  Gene #1224: 'GPSM2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
GPSM2 MUTATED 0 2 4 3 1 0 3
GPSM2 WILD-TYPE 60 48 45 37 62 125 96

Figure S3408.  Get High-res Image Gene #1224: 'GPSM2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'GPSM2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.337 (Fisher's exact test), Q value = 0.66

Table S13028.  Gene #1224: 'GPSM2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
GPSM2 MUTATED 6 2 0 5
GPSM2 WILD-TYPE 124 76 68 191
'GPSM2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.622 (Fisher's exact test), Q value = 0.92

Table S13029.  Gene #1224: 'GPSM2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
GPSM2 MUTATED 1 2 1 0 3 2 2 0 2
GPSM2 WILD-TYPE 39 60 27 80 66 46 41 28 72
'GPSM2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.193 (Fisher's exact test), Q value = 0.5

Table S13030.  Gene #1224: 'GPSM2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
GPSM2 MUTATED 0 1 1 2
GPSM2 WILD-TYPE 33 30 26 17
'GPSM2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.671 (Fisher's exact test), Q value = 0.95

Table S13031.  Gene #1224: 'GPSM2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
GPSM2 MUTATED 2 0 2 0
GPSM2 WILD-TYPE 52 10 22 22
'OR4B1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0944 (Fisher's exact test), Q value = 0.34

Table S13032.  Gene #1225: 'OR4B1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
OR4B1 MUTATED 5 0 1 0
OR4B1 WILD-TYPE 173 183 100 20
'OR4B1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.556 (Fisher's exact test), Q value = 0.87

Table S13033.  Gene #1225: 'OR4B1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
OR4B1 MUTATED 2 0 2
OR4B1 WILD-TYPE 85 80 98
'OR4B1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.456 (Fisher's exact test), Q value = 0.78

Table S13034.  Gene #1225: 'OR4B1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
OR4B1 MUTATED 2 1 2
OR4B1 WILD-TYPE 87 159 136
'OR4B1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.504 (Fisher's exact test), Q value = 0.83

Table S13035.  Gene #1225: 'OR4B1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
OR4B1 MUTATED 4 1 0
OR4B1 WILD-TYPE 178 132 72
'OR4B1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.241 (Fisher's exact test), Q value = 0.56

Table S13036.  Gene #1225: 'OR4B1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
OR4B1 MUTATED 0 3 1 2
OR4B1 WILD-TYPE 112 93 91 184
'OR4B1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.191 (Fisher's exact test), Q value = 0.49

Table S13037.  Gene #1225: 'OR4B1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
OR4B1 MUTATED 2 1 1 1 0 0 1
OR4B1 WILD-TYPE 58 49 48 39 63 125 98
'OR4B1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.54 (Fisher's exact test), Q value = 0.86

Table S13038.  Gene #1225: 'OR4B1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
OR4B1 MUTATED 3 0 1 2
OR4B1 WILD-TYPE 127 78 67 194
'OR4B1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.539 (Fisher's exact test), Q value = 0.86

Table S13039.  Gene #1225: 'OR4B1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
OR4B1 MUTATED 0 1 0 1 3 0 1 0 0
OR4B1 WILD-TYPE 40 61 28 79 66 48 42 28 74
'LEO1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00143 (Fisher's exact test), Q value = 0.031

Table S13040.  Gene #1226: 'LEO1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
LEO1 MUTATED 0 0 0 4
LEO1 WILD-TYPE 46 58 64 39

Figure S3409.  Get High-res Image Gene #1226: 'LEO1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'LEO1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.178 (Fisher's exact test), Q value = 0.48

Table S13041.  Gene #1226: 'LEO1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
LEO1 MUTATED 2 0 2
LEO1 WILD-TYPE 49 83 75
'LEO1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0813 (Fisher's exact test), Q value = 0.31

Table S13042.  Gene #1226: 'LEO1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
LEO1 MUTATED 9 2 1 0
LEO1 WILD-TYPE 169 181 100 20
'LEO1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.495 (Fisher's exact test), Q value = 0.82

Table S13043.  Gene #1226: 'LEO1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
LEO1 MUTATED 4 1 3
LEO1 WILD-TYPE 83 79 97
'LEO1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.658 (Fisher's exact test), Q value = 0.94

Table S13044.  Gene #1226: 'LEO1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
LEO1 MUTATED 2 3 5
LEO1 WILD-TYPE 87 157 133
'LEO1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.637 (Fisher's exact test), Q value = 0.93

Table S13045.  Gene #1226: 'LEO1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
LEO1 MUTATED 4 5 1
LEO1 WILD-TYPE 178 128 71
'LEO1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0896 (Fisher's exact test), Q value = 0.33

Table S13046.  Gene #1226: 'LEO1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
LEO1 MUTATED 0 4 4 4
LEO1 WILD-TYPE 112 92 88 182
'LEO1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.068 (Fisher's exact test), Q value = 0.28

Table S13047.  Gene #1226: 'LEO1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
LEO1 MUTATED 0 2 2 1 3 0 4
LEO1 WILD-TYPE 60 48 47 39 60 125 95
'LEO1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.232 (Fisher's exact test), Q value = 0.55

Table S13048.  Gene #1226: 'LEO1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
LEO1 MUTATED 1 4 1 5
LEO1 WILD-TYPE 129 74 67 191
'LEO1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.647 (Fisher's exact test), Q value = 0.93

Table S13049.  Gene #1226: 'LEO1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
LEO1 MUTATED 1 3 1 1 3 0 0 0 2
LEO1 WILD-TYPE 39 59 27 79 66 48 43 28 72
'LEO1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.873 (Fisher's exact test), Q value = 1

Table S13050.  Gene #1226: 'LEO1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
LEO1 MUTATED 1 1 0 1
LEO1 WILD-TYPE 32 30 27 18
'LEO1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S13051.  Gene #1226: 'LEO1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
LEO1 MUTATED 2 0 1 0
LEO1 WILD-TYPE 52 10 23 22
'SETX MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00399 (Fisher's exact test), Q value = 0.058

Table S13052.  Gene #1227: 'SETX MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
SETX MUTATED 5 1 1 7
SETX WILD-TYPE 41 57 63 36

Figure S3410.  Get High-res Image Gene #1227: 'SETX MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'SETX MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.197 (Fisher's exact test), Q value = 0.5

Table S13053.  Gene #1227: 'SETX MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
SETX MUTATED 6 3 5
SETX WILD-TYPE 45 80 72
'SETX MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0253 (Fisher's exact test), Q value = 0.16

Table S13054.  Gene #1227: 'SETX MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
SETX MUTATED 20 6 6 1
SETX WILD-TYPE 158 177 95 19

Figure S3411.  Get High-res Image Gene #1227: 'SETX MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'SETX MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.345 (Fisher's exact test), Q value = 0.67

Table S13055.  Gene #1227: 'SETX MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
SETX MUTATED 7 3 9
SETX WILD-TYPE 80 77 91
'SETX MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.451 (Fisher's exact test), Q value = 0.78

Table S13056.  Gene #1227: 'SETX MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
SETX MUTATED 4 14 11
SETX WILD-TYPE 85 146 127
'SETX MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.48 (Fisher's exact test), Q value = 0.81

Table S13057.  Gene #1227: 'SETX MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
SETX MUTATED 14 12 3
SETX WILD-TYPE 168 121 69
'SETX MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0579 (Fisher's exact test), Q value = 0.26

Table S13058.  Gene #1227: 'SETX MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
SETX MUTATED 2 9 7 16
SETX WILD-TYPE 110 87 85 170
'SETX MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0041 (Fisher's exact test), Q value = 0.058

Table S13059.  Gene #1227: 'SETX MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
SETX MUTATED 2 3 10 1 3 4 11
SETX WILD-TYPE 58 47 39 39 60 121 88

Figure S3412.  Get High-res Image Gene #1227: 'SETX MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'SETX MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.535 (Fisher's exact test), Q value = 0.85

Table S13060.  Gene #1227: 'SETX MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
SETX MUTATED 10 5 2 16
SETX WILD-TYPE 120 73 66 180
'SETX MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00928 (Fisher's exact test), Q value = 0.091

Table S13061.  Gene #1227: 'SETX MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
SETX MUTATED 3 5 3 3 12 1 0 0 6
SETX WILD-TYPE 37 57 25 77 57 47 43 28 68

Figure S3413.  Get High-res Image Gene #1227: 'SETX MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'SETX MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00108 (Fisher's exact test), Q value = 0.026

Table S13062.  Gene #1227: 'SETX MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
SETX MUTATED 2 0 0 5
SETX WILD-TYPE 31 31 27 14

Figure S3414.  Get High-res Image Gene #1227: 'SETX MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'SETX MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S13063.  Gene #1227: 'SETX MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
SETX MUTATED 4 0 2 1
SETX WILD-TYPE 50 10 22 21
'ZBTB5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00996 (Fisher's exact test), Q value = 0.095

Table S13064.  Gene #1228: 'ZBTB5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ZBTB5 MUTATED 7 0 0 0
ZBTB5 WILD-TYPE 171 183 101 20

Figure S3415.  Get High-res Image Gene #1228: 'ZBTB5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ZBTB5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.139 (Fisher's exact test), Q value = 0.42

Table S13065.  Gene #1228: 'ZBTB5 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ZBTB5 MUTATED 4 0 2
ZBTB5 WILD-TYPE 83 80 98
'ZBTB5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.06 (Fisher's exact test), Q value = 0.27

Table S13066.  Gene #1228: 'ZBTB5 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ZBTB5 MUTATED 1 0 4
ZBTB5 WILD-TYPE 88 160 134
'ZBTB5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.213 (Fisher's exact test), Q value = 0.52

Table S13067.  Gene #1228: 'ZBTB5 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ZBTB5 MUTATED 4 0 1
ZBTB5 WILD-TYPE 178 133 71
'ZBTB5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00053 (Fisher's exact test), Q value = 0.016

Table S13068.  Gene #1228: 'ZBTB5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ZBTB5 MUTATED 0 0 6 1
ZBTB5 WILD-TYPE 112 96 86 185

Figure S3416.  Get High-res Image Gene #1228: 'ZBTB5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'ZBTB5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00064 (Fisher's exact test), Q value = 0.018

Table S13069.  Gene #1228: 'ZBTB5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ZBTB5 MUTATED 0 0 5 0 1 0 1
ZBTB5 WILD-TYPE 60 50 44 40 62 125 98

Figure S3417.  Get High-res Image Gene #1228: 'ZBTB5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ZBTB5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.281 (Fisher's exact test), Q value = 0.61

Table S13070.  Gene #1228: 'ZBTB5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ZBTB5 MUTATED 1 3 0 3
ZBTB5 WILD-TYPE 129 75 68 193
'ZBTB5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.138 (Fisher's exact test), Q value = 0.41

Table S13071.  Gene #1228: 'ZBTB5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ZBTB5 MUTATED 0 4 0 1 2 0 0 0 0
ZBTB5 WILD-TYPE 40 58 28 79 67 48 43 28 74
'ZBTB5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.137 (Fisher's exact test), Q value = 0.41

Table S13072.  Gene #1228: 'ZBTB5 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
ZBTB5 MUTATED 1 0 0 2
ZBTB5 WILD-TYPE 32 31 27 17
'ZBTB5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S13073.  Gene #1228: 'ZBTB5 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
ZBTB5 MUTATED 2 0 1 0
ZBTB5 WILD-TYPE 52 10 23 22
'C16ORF45 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.193 (Fisher's exact test), Q value = 0.5

Table S13074.  Gene #1229: 'C16ORF45 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
C16ORF45 MUTATED 0 0 1 2
C16ORF45 WILD-TYPE 46 58 63 41
'C16ORF45 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S13075.  Gene #1229: 'C16ORF45 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
C16ORF45 MUTATED 1 1 1
C16ORF45 WILD-TYPE 50 82 76
'C16ORF45 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.627 (Fisher's exact test), Q value = 0.92

Table S13076.  Gene #1229: 'C16ORF45 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
C16ORF45 MUTATED 3 1 2 0
C16ORF45 WILD-TYPE 175 182 99 20
'C16ORF45 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.513 (Fisher's exact test), Q value = 0.83

Table S13077.  Gene #1229: 'C16ORF45 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
C16ORF45 MUTATED 2 0 1
C16ORF45 WILD-TYPE 85 80 99
'C16ORF45 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.455 (Fisher's exact test), Q value = 0.78

Table S13078.  Gene #1229: 'C16ORF45 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
C16ORF45 MUTATED 2 1 2
C16ORF45 WILD-TYPE 87 159 136
'C16ORF45 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.42 (Fisher's exact test), Q value = 0.75

Table S13079.  Gene #1229: 'C16ORF45 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
C16ORF45 MUTATED 2 1 2
C16ORF45 WILD-TYPE 180 132 70
'C16ORF45 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.509 (Fisher's exact test), Q value = 0.83

Table S13080.  Gene #1229: 'C16ORF45 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
C16ORF45 MUTATED 0 2 1 3
C16ORF45 WILD-TYPE 112 94 91 183
'C16ORF45 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.496 (Fisher's exact test), Q value = 0.82

Table S13081.  Gene #1229: 'C16ORF45 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
C16ORF45 MUTATED 1 2 1 0 0 1 1
C16ORF45 WILD-TYPE 59 48 48 40 63 124 98
'C16ORF45 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.292 (Fisher's exact test), Q value = 0.62

Table S13082.  Gene #1229: 'C16ORF45 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
C16ORF45 MUTATED 0 2 1 3
C16ORF45 WILD-TYPE 130 76 67 193
'C16ORF45 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.818 (Fisher's exact test), Q value = 1

Table S13083.  Gene #1229: 'C16ORF45 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
C16ORF45 MUTATED 1 1 0 0 1 0 1 0 2
C16ORF45 WILD-TYPE 39 61 28 80 68 48 42 28 72
'HCLS1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00997 (Fisher's exact test), Q value = 0.095

Table S13084.  Gene #1230: 'HCLS1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
HCLS1 MUTATED 2 1 0 5
HCLS1 WILD-TYPE 44 57 64 38

Figure S3418.  Get High-res Image Gene #1230: 'HCLS1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'HCLS1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.134 (Fisher's exact test), Q value = 0.41

Table S13085.  Gene #1230: 'HCLS1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
HCLS1 MUTATED 4 1 3
HCLS1 WILD-TYPE 47 82 74
'HCLS1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00067 (Fisher's exact test), Q value = 0.019

Table S13086.  Gene #1230: 'HCLS1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
HCLS1 MUTATED 14 2 0 0
HCLS1 WILD-TYPE 164 181 101 20

Figure S3419.  Get High-res Image Gene #1230: 'HCLS1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'HCLS1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.494 (Fisher's exact test), Q value = 0.82

Table S13087.  Gene #1230: 'HCLS1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
HCLS1 MUTATED 4 1 3
HCLS1 WILD-TYPE 83 79 97
'HCLS1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.932 (Fisher's exact test), Q value = 1

Table S13088.  Gene #1230: 'HCLS1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
HCLS1 MUTATED 2 5 5
HCLS1 WILD-TYPE 87 155 133
'HCLS1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.638 (Fisher's exact test), Q value = 0.93

Table S13089.  Gene #1230: 'HCLS1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
HCLS1 MUTATED 7 4 1
HCLS1 WILD-TYPE 175 129 71
'HCLS1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.377 (Fisher's exact test), Q value = 0.71

Table S13090.  Gene #1230: 'HCLS1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
HCLS1 MUTATED 1 4 3 8
HCLS1 WILD-TYPE 111 92 89 178
'HCLS1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0414 (Fisher's exact test), Q value = 0.21

Table S13091.  Gene #1230: 'HCLS1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
HCLS1 MUTATED 1 1 5 1 1 1 6
HCLS1 WILD-TYPE 59 49 44 39 62 124 93

Figure S3420.  Get High-res Image Gene #1230: 'HCLS1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'HCLS1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.428 (Fisher's exact test), Q value = 0.76

Table S13092.  Gene #1230: 'HCLS1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
HCLS1 MUTATED 2 3 1 9
HCLS1 WILD-TYPE 128 75 67 187
'HCLS1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00447 (Fisher's exact test), Q value = 0.061

Table S13093.  Gene #1230: 'HCLS1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
HCLS1 MUTATED 0 4 2 0 7 0 1 0 1
HCLS1 WILD-TYPE 40 58 26 80 62 48 42 28 73

Figure S3421.  Get High-res Image Gene #1230: 'HCLS1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'DNAJB9 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0219 (Fisher's exact test), Q value = 0.15

Table S13094.  Gene #1231: 'DNAJB9 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
DNAJB9 MUTATED 6 0 0 0
DNAJB9 WILD-TYPE 172 183 101 20

Figure S3422.  Get High-res Image Gene #1231: 'DNAJB9 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'DNAJB9 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.203 (Fisher's exact test), Q value = 0.51

Table S13095.  Gene #1231: 'DNAJB9 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
DNAJB9 MUTATED 3 0 1
DNAJB9 WILD-TYPE 84 80 99
'DNAJB9 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.24 (Fisher's exact test), Q value = 0.56

Table S13096.  Gene #1231: 'DNAJB9 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
DNAJB9 MUTATED 0 2 4
DNAJB9 WILD-TYPE 89 158 134
'DNAJB9 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.664 (Fisher's exact test), Q value = 0.95

Table S13097.  Gene #1231: 'DNAJB9 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
DNAJB9 MUTATED 4 2 0
DNAJB9 WILD-TYPE 178 131 72
'DNAJB9 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.215 (Fisher's exact test), Q value = 0.53

Table S13098.  Gene #1231: 'DNAJB9 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
DNAJB9 MUTATED 0 1 3 2
DNAJB9 WILD-TYPE 112 95 89 184
'DNAJB9 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0557 (Fisher's exact test), Q value = 0.26

Table S13099.  Gene #1231: 'DNAJB9 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
DNAJB9 MUTATED 1 0 3 0 1 0 1
DNAJB9 WILD-TYPE 59 50 46 40 62 125 98
'DNAJB9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.23 (Fisher's exact test), Q value = 0.55

Table S13100.  Gene #1231: 'DNAJB9 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
DNAJB9 MUTATED 1 3 0 2
DNAJB9 WILD-TYPE 129 75 68 194
'DNAJB9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0948 (Fisher's exact test), Q value = 0.34

Table S13101.  Gene #1231: 'DNAJB9 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
DNAJB9 MUTATED 0 3 1 0 2 0 0 0 0
DNAJB9 WILD-TYPE 40 59 27 80 67 48 43 28 74
'ICA1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.718 (Fisher's exact test), Q value = 0.99

Table S13102.  Gene #1232: 'ICA1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ICA1 MUTATED 4 2 1 0
ICA1 WILD-TYPE 174 181 100 20
'ICA1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.864 (Fisher's exact test), Q value = 1

Table S13103.  Gene #1232: 'ICA1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ICA1 MUTATED 1 2 2
ICA1 WILD-TYPE 86 78 98
'ICA1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.374 (Fisher's exact test), Q value = 0.7

Table S13104.  Gene #1232: 'ICA1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ICA1 MUTATED 0 2 3
ICA1 WILD-TYPE 89 158 135
'ICA1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.718 (Fisher's exact test), Q value = 0.99

Table S13105.  Gene #1232: 'ICA1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ICA1 MUTATED 3 2 0
ICA1 WILD-TYPE 179 131 72
'ICA1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.254 (Fisher's exact test), Q value = 0.58

Table S13106.  Gene #1232: 'ICA1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ICA1 MUTATED 2 0 3 2
ICA1 WILD-TYPE 110 96 89 184
'ICA1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.302 (Fisher's exact test), Q value = 0.63

Table S13107.  Gene #1232: 'ICA1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ICA1 MUTATED 1 2 1 0 1 0 2
ICA1 WILD-TYPE 59 48 48 40 62 125 97
'ICA1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.479 (Fisher's exact test), Q value = 0.81

Table S13108.  Gene #1232: 'ICA1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ICA1 MUTATED 3 2 0 2
ICA1 WILD-TYPE 127 76 68 194
'ICA1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.605 (Fisher's exact test), Q value = 0.91

Table S13109.  Gene #1232: 'ICA1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ICA1 MUTATED 1 2 0 2 1 0 0 1 0
ICA1 WILD-TYPE 39 60 28 78 68 48 43 27 74
'SMARCB1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.32 (Fisher's exact test), Q value = 0.65

Table S13110.  Gene #1233: 'SMARCB1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
SMARCB1 MUTATED 0 2 0 1
SMARCB1 WILD-TYPE 46 56 64 42
'SMARCB1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.121 (Fisher's exact test), Q value = 0.39

Table S13111.  Gene #1233: 'SMARCB1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
SMARCB1 MUTATED 0 3 0
SMARCB1 WILD-TYPE 51 80 77
'SMARCB1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.318 (Fisher's exact test), Q value = 0.65

Table S13112.  Gene #1233: 'SMARCB1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
SMARCB1 MUTATED 13 7 3 1
SMARCB1 WILD-TYPE 165 176 98 19
'SMARCB1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.882 (Fisher's exact test), Q value = 1

Table S13113.  Gene #1233: 'SMARCB1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
SMARCB1 MUTATED 6 6 9
SMARCB1 WILD-TYPE 81 74 91
'SMARCB1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.339 (Fisher's exact test), Q value = 0.67

Table S13114.  Gene #1233: 'SMARCB1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
SMARCB1 MUTATED 2 9 9
SMARCB1 WILD-TYPE 87 151 129
'SMARCB1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.597 (Fisher's exact test), Q value = 0.9

Table S13115.  Gene #1233: 'SMARCB1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
SMARCB1 MUTATED 8 9 3
SMARCB1 WILD-TYPE 174 124 69
'SMARCB1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00117 (Fisher's exact test), Q value = 0.027

Table S13116.  Gene #1233: 'SMARCB1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
SMARCB1 MUTATED 10 9 3 2
SMARCB1 WILD-TYPE 102 87 89 184

Figure S3423.  Get High-res Image Gene #1233: 'SMARCB1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'SMARCB1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0137 (Fisher's exact test), Q value = 0.12

Table S13117.  Gene #1233: 'SMARCB1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
SMARCB1 MUTATED 5 6 5 2 2 2 2
SMARCB1 WILD-TYPE 55 44 44 38 61 123 97

Figure S3424.  Get High-res Image Gene #1233: 'SMARCB1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'SMARCB1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0627 (Fisher's exact test), Q value = 0.27

Table S13118.  Gene #1233: 'SMARCB1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
SMARCB1 MUTATED 12 3 3 5
SMARCB1 WILD-TYPE 118 75 65 191
'SMARCB1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.139 (Fisher's exact test), Q value = 0.41

Table S13119.  Gene #1233: 'SMARCB1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
SMARCB1 MUTATED 5 3 3 2 4 2 3 0 1
SMARCB1 WILD-TYPE 35 59 25 78 65 46 40 28 73
'SMARCB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.703 (Fisher's exact test), Q value = 0.97

Table S13120.  Gene #1233: 'SMARCB1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
SMARCB1 MUTATED 2 1 0 0
SMARCB1 WILD-TYPE 31 30 27 19
'SMARCB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.194 (Fisher's exact test), Q value = 0.5

Table S13121.  Gene #1233: 'SMARCB1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
SMARCB1 MUTATED 1 1 0 1
SMARCB1 WILD-TYPE 53 9 24 21
'MTOR MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0277 (Fisher's exact test), Q value = 0.17

Table S13122.  Gene #1234: 'MTOR MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
MTOR MUTATED 5 1 3 7
MTOR WILD-TYPE 41 57 61 36

Figure S3425.  Get High-res Image Gene #1234: 'MTOR MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'MTOR MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.101 (Fisher's exact test), Q value = 0.35

Table S13123.  Gene #1234: 'MTOR MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
MTOR MUTATED 7 3 6
MTOR WILD-TYPE 44 80 71
'MTOR MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00145 (Fisher's exact test), Q value = 0.031

Table S13124.  Gene #1234: 'MTOR MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
MTOR MUTATED 25 8 4 0
MTOR WILD-TYPE 153 175 97 20

Figure S3426.  Get High-res Image Gene #1234: 'MTOR MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'MTOR MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.15 (Fisher's exact test), Q value = 0.43

Table S13125.  Gene #1234: 'MTOR MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
MTOR MUTATED 7 3 12
MTOR WILD-TYPE 80 77 88
'MTOR MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.706 (Fisher's exact test), Q value = 0.98

Table S13126.  Gene #1234: 'MTOR MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
MTOR MUTATED 5 13 8
MTOR WILD-TYPE 84 147 130
'MTOR MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.863 (Fisher's exact test), Q value = 1

Table S13127.  Gene #1234: 'MTOR MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
MTOR MUTATED 11 10 5
MTOR WILD-TYPE 171 123 67
'MTOR MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.147 (Fisher's exact test), Q value = 0.43

Table S13128.  Gene #1234: 'MTOR MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
MTOR MUTATED 5 12 5 16
MTOR WILD-TYPE 107 84 87 170
'MTOR MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00077 (Fisher's exact test), Q value = 0.021

Table S13129.  Gene #1234: 'MTOR MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
MTOR MUTATED 6 5 10 0 1 5 11
MTOR WILD-TYPE 54 45 39 40 62 120 88

Figure S3427.  Get High-res Image Gene #1234: 'MTOR MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'MTOR MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.362 (Fisher's exact test), Q value = 0.69

Table S13130.  Gene #1234: 'MTOR MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
MTOR MUTATED 13 6 2 16
MTOR WILD-TYPE 117 72 66 180
'MTOR MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.108 (Fisher's exact test), Q value = 0.36

Table S13131.  Gene #1234: 'MTOR MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
MTOR MUTATED 3 4 3 5 11 3 4 3 1
MTOR WILD-TYPE 37 58 25 75 58 45 39 25 73
'MTOR MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00706 (Fisher's exact test), Q value = 0.077

Table S13132.  Gene #1234: 'MTOR MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
MTOR MUTATED 3 0 0 4
MTOR WILD-TYPE 30 31 27 15

Figure S3428.  Get High-res Image Gene #1234: 'MTOR MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'MTOR MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S13133.  Gene #1234: 'MTOR MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
MTOR MUTATED 4 0 2 1
MTOR WILD-TYPE 50 10 22 21
'RNF219 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.207 (Fisher's exact test), Q value = 0.51

Table S13134.  Gene #1235: 'RNF219 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
RNF219 MUTATED 0 1 1 3
RNF219 WILD-TYPE 46 57 63 40
'RNF219 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.64 (Fisher's exact test), Q value = 0.93

Table S13135.  Gene #1235: 'RNF219 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
RNF219 MUTATED 1 1 3
RNF219 WILD-TYPE 50 82 74
'RNF219 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0943 (Fisher's exact test), Q value = 0.34

Table S13136.  Gene #1235: 'RNF219 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
RNF219 MUTATED 12 4 2 1
RNF219 WILD-TYPE 166 179 99 19
'RNF219 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.294 (Fisher's exact test), Q value = 0.62

Table S13137.  Gene #1235: 'RNF219 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
RNF219 MUTATED 7 2 5
RNF219 WILD-TYPE 80 78 95
'RNF219 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.804 (Fisher's exact test), Q value = 1

Table S13138.  Gene #1235: 'RNF219 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
RNF219 MUTATED 3 6 7
RNF219 WILD-TYPE 86 154 131
'RNF219 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.351 (Fisher's exact test), Q value = 0.68

Table S13139.  Gene #1235: 'RNF219 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
RNF219 MUTATED 10 3 3
RNF219 WILD-TYPE 172 130 69
'RNF219 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0582 (Fisher's exact test), Q value = 0.26

Table S13140.  Gene #1235: 'RNF219 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
RNF219 MUTATED 2 7 6 4
RNF219 WILD-TYPE 110 89 86 182
'RNF219 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0135 (Fisher's exact test), Q value = 0.11

Table S13141.  Gene #1235: 'RNF219 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
RNF219 MUTATED 3 2 7 1 2 1 3
RNF219 WILD-TYPE 57 48 42 39 61 124 96

Figure S3429.  Get High-res Image Gene #1235: 'RNF219 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'RNF219 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0588 (Fisher's exact test), Q value = 0.26

Table S13142.  Gene #1235: 'RNF219 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
RNF219 MUTATED 9 4 2 3
RNF219 WILD-TYPE 121 74 66 193
'RNF219 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.25 (Fisher's exact test), Q value = 0.58

Table S13143.  Gene #1235: 'RNF219 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
RNF219 MUTATED 3 5 1 3 4 0 0 0 2
RNF219 WILD-TYPE 37 57 27 77 65 48 43 28 72
'RNF219 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0708 (Fisher's exact test), Q value = 0.29

Table S13144.  Gene #1235: 'RNF219 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
RNF219 MUTATED 1 0 1 3
RNF219 WILD-TYPE 32 31 26 16
'RNF219 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.189 (Fisher's exact test), Q value = 0.49

Table S13145.  Gene #1235: 'RNF219 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
RNF219 MUTATED 2 0 3 0
RNF219 WILD-TYPE 52 10 21 22
'KIAA0528 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.256 (Fisher's exact test), Q value = 0.58

Table S13146.  Gene #1236: 'KIAA0528 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
KIAA0528 MUTATED 2 0 1 2
KIAA0528 WILD-TYPE 44 58 63 41
'KIAA0528 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.638 (Fisher's exact test), Q value = 0.93

Table S13147.  Gene #1236: 'KIAA0528 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
KIAA0528 MUTATED 2 1 2
KIAA0528 WILD-TYPE 49 82 75
'KIAA0528 MUTATION STATUS' versus 'CN_CNMF'

P value = 8e-04 (Fisher's exact test), Q value = 0.021

Table S13148.  Gene #1236: 'KIAA0528 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
KIAA0528 MUTATED 14 1 1 0
KIAA0528 WILD-TYPE 164 182 100 20

Figure S3430.  Get High-res Image Gene #1236: 'KIAA0528 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'KIAA0528 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.689 (Fisher's exact test), Q value = 0.97

Table S13149.  Gene #1236: 'KIAA0528 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
KIAA0528 MUTATED 5 3 3
KIAA0528 WILD-TYPE 82 77 97
'KIAA0528 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.392 (Fisher's exact test), Q value = 0.72

Table S13150.  Gene #1236: 'KIAA0528 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
KIAA0528 MUTATED 1 7 4
KIAA0528 WILD-TYPE 88 153 134
'KIAA0528 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.123 (Fisher's exact test), Q value = 0.39

Table S13151.  Gene #1236: 'KIAA0528 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
KIAA0528 MUTATED 5 7 0
KIAA0528 WILD-TYPE 177 126 72
'KIAA0528 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.755 (Fisher's exact test), Q value = 1

Table S13152.  Gene #1236: 'KIAA0528 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
KIAA0528 MUTATED 3 3 5 6
KIAA0528 WILD-TYPE 109 93 87 180
'KIAA0528 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.01 (Fisher's exact test), Q value = 0.096

Table S13153.  Gene #1236: 'KIAA0528 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
KIAA0528 MUTATED 4 1 6 0 1 1 4
KIAA0528 WILD-TYPE 56 49 43 40 62 124 95

Figure S3431.  Get High-res Image Gene #1236: 'KIAA0528 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'KIAA0528 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.773 (Fisher's exact test), Q value = 1

Table S13154.  Gene #1236: 'KIAA0528 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
KIAA0528 MUTATED 4 3 1 9
KIAA0528 WILD-TYPE 126 75 67 187
'KIAA0528 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.908 (Fisher's exact test), Q value = 1

Table S13155.  Gene #1236: 'KIAA0528 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
KIAA0528 MUTATED 1 3 1 2 5 1 1 1 2
KIAA0528 WILD-TYPE 39 59 27 78 64 47 42 27 72
'KIAA0528 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.78 (Fisher's exact test), Q value = 1

Table S13156.  Gene #1236: 'KIAA0528 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
KIAA0528 MUTATED 1 0 1 1
KIAA0528 WILD-TYPE 32 31 26 18
'KIAA0528 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S13157.  Gene #1236: 'KIAA0528 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
KIAA0528 MUTATED 2 0 1 0
KIAA0528 WILD-TYPE 52 10 23 22
'GABPA MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0732 (Fisher's exact test), Q value = 0.29

Table S13158.  Gene #1237: 'GABPA MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
GABPA MUTATED 2 0 0 2
GABPA WILD-TYPE 44 58 64 41
'GABPA MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0613 (Fisher's exact test), Q value = 0.27

Table S13159.  Gene #1237: 'GABPA MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
GABPA MUTATED 3 1 0
GABPA WILD-TYPE 48 82 77
'GABPA MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0152 (Fisher's exact test), Q value = 0.12

Table S13160.  Gene #1237: 'GABPA MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
GABPA MUTATED 10 2 0 0
GABPA WILD-TYPE 168 181 101 20

Figure S3432.  Get High-res Image Gene #1237: 'GABPA MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'GABPA MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.32 (Fisher's exact test), Q value = 0.65

Table S13161.  Gene #1237: 'GABPA MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
GABPA MUTATED 1 2 5
GABPA WILD-TYPE 86 78 95
'GABPA MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.12 (Fisher's exact test), Q value = 0.39

Table S13162.  Gene #1237: 'GABPA MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
GABPA MUTATED 0 3 6
GABPA WILD-TYPE 89 157 132
'GABPA MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S13163.  Gene #1237: 'GABPA MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
GABPA MUTATED 5 3 1
GABPA WILD-TYPE 177 130 71
'GABPA MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.856 (Fisher's exact test), Q value = 1

Table S13164.  Gene #1237: 'GABPA MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
GABPA MUTATED 2 3 3 4
GABPA WILD-TYPE 110 93 89 182
'GABPA MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0329 (Fisher's exact test), Q value = 0.19

Table S13165.  Gene #1237: 'GABPA MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
GABPA MUTATED 2 1 4 0 1 0 4
GABPA WILD-TYPE 58 49 45 40 62 125 95

Figure S3433.  Get High-res Image Gene #1237: 'GABPA MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'GABPA MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.222 (Fisher's exact test), Q value = 0.54

Table S13166.  Gene #1237: 'GABPA MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
GABPA MUTATED 6 1 0 4
GABPA WILD-TYPE 124 77 68 192
'GABPA MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.241 (Fisher's exact test), Q value = 0.56

Table S13167.  Gene #1237: 'GABPA MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
GABPA MUTATED 0 1 2 2 3 2 0 1 0
GABPA WILD-TYPE 40 61 26 78 66 46 43 27 74
'GABPA MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.666 (Fisher's exact test), Q value = 0.95

Table S13168.  Gene #1237: 'GABPA MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
GABPA MUTATED 1 1 1 2
GABPA WILD-TYPE 32 30 26 17
'GABPA MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.346 (Fisher's exact test), Q value = 0.67

Table S13169.  Gene #1237: 'GABPA MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
GABPA MUTATED 1 0 2 2
GABPA WILD-TYPE 53 10 22 20
'PPP2R2B MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.626 (Fisher's exact test), Q value = 0.92

Table S13170.  Gene #1238: 'PPP2R2B MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
PPP2R2B MUTATED 1 1 0 1
PPP2R2B WILD-TYPE 45 57 64 42
'PPP2R2B MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S13171.  Gene #1238: 'PPP2R2B MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
PPP2R2B MUTATED 1 1 1
PPP2R2B WILD-TYPE 50 82 76
'PPP2R2B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.212 (Fisher's exact test), Q value = 0.52

Table S13172.  Gene #1238: 'PPP2R2B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
PPP2R2B MUTATED 7 4 0 0
PPP2R2B WILD-TYPE 171 179 101 20
'PPP2R2B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.605 (Fisher's exact test), Q value = 0.91

Table S13173.  Gene #1238: 'PPP2R2B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
PPP2R2B MUTATED 3 1 4
PPP2R2B WILD-TYPE 84 79 96
'PPP2R2B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.895 (Fisher's exact test), Q value = 1

Table S13174.  Gene #1238: 'PPP2R2B MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
PPP2R2B MUTATED 2 3 2
PPP2R2B WILD-TYPE 87 157 136
'PPP2R2B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.887 (Fisher's exact test), Q value = 1

Table S13175.  Gene #1238: 'PPP2R2B MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
PPP2R2B MUTATED 3 3 1
PPP2R2B WILD-TYPE 179 130 71
'PPP2R2B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.47 (Fisher's exact test), Q value = 0.8

Table S13176.  Gene #1238: 'PPP2R2B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
PPP2R2B MUTATED 3 3 3 2
PPP2R2B WILD-TYPE 109 93 89 184
'PPP2R2B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0217 (Fisher's exact test), Q value = 0.15

Table S13177.  Gene #1238: 'PPP2R2B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
PPP2R2B MUTATED 0 1 5 0 2 1 2
PPP2R2B WILD-TYPE 60 49 44 40 61 124 97

Figure S3434.  Get High-res Image Gene #1238: 'PPP2R2B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'PPP2R2B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.748 (Fisher's exact test), Q value = 1

Table S13178.  Gene #1238: 'PPP2R2B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
PPP2R2B MUTATED 2 3 1 5
PPP2R2B WILD-TYPE 128 75 67 191
'PPP2R2B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.495 (Fisher's exact test), Q value = 0.82

Table S13179.  Gene #1238: 'PPP2R2B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
PPP2R2B MUTATED 0 2 2 2 2 1 1 1 0
PPP2R2B WILD-TYPE 40 60 26 78 67 47 42 27 74
'PPP2R2B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.268 (Fisher's exact test), Q value = 0.59

Table S13180.  Gene #1238: 'PPP2R2B MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
PPP2R2B MUTATED 1 0 1 2
PPP2R2B WILD-TYPE 32 31 26 17
'PPP2R2B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.177 (Fisher's exact test), Q value = 0.48

Table S13181.  Gene #1238: 'PPP2R2B MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
PPP2R2B MUTATED 1 1 2 0
PPP2R2B WILD-TYPE 53 9 22 22
'NEK1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.105 (Fisher's exact test), Q value = 0.36

Table S13182.  Gene #1239: 'NEK1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
NEK1 MUTATED 3 1 0 2
NEK1 WILD-TYPE 43 57 64 41
'NEK1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.657 (Fisher's exact test), Q value = 0.94

Table S13183.  Gene #1239: 'NEK1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
NEK1 MUTATED 2 3 1
NEK1 WILD-TYPE 49 80 76
'NEK1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00607 (Fisher's exact test), Q value = 0.071

Table S13184.  Gene #1239: 'NEK1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
NEK1 MUTATED 11 2 0 1
NEK1 WILD-TYPE 167 181 101 19

Figure S3435.  Get High-res Image Gene #1239: 'NEK1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'NEK1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.113 (Fisher's exact test), Q value = 0.37

Table S13185.  Gene #1239: 'NEK1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
NEK1 MUTATED 3 0 5
NEK1 WILD-TYPE 84 80 95
'NEK1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0738 (Fisher's exact test), Q value = 0.29

Table S13186.  Gene #1239: 'NEK1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
NEK1 MUTATED 0 4 7
NEK1 WILD-TYPE 89 156 131
'NEK1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.26 (Fisher's exact test), Q value = 0.58

Table S13187.  Gene #1239: 'NEK1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
NEK1 MUTATED 7 4 0
NEK1 WILD-TYPE 175 129 72
'NEK1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.471 (Fisher's exact test), Q value = 0.8

Table S13188.  Gene #1239: 'NEK1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
NEK1 MUTATED 1 4 3 6
NEK1 WILD-TYPE 111 92 89 180
'NEK1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.162 (Fisher's exact test), Q value = 0.45

Table S13189.  Gene #1239: 'NEK1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
NEK1 MUTATED 0 1 4 2 1 2 4
NEK1 WILD-TYPE 60 49 45 38 62 123 95
'NEK1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.729 (Fisher's exact test), Q value = 1

Table S13190.  Gene #1239: 'NEK1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
NEK1 MUTATED 5 1 1 7
NEK1 WILD-TYPE 125 77 67 189
'NEK1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.123 (Fisher's exact test), Q value = 0.39

Table S13191.  Gene #1239: 'NEK1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
NEK1 MUTATED 2 3 2 3 4 0 0 0 0
NEK1 WILD-TYPE 38 59 26 77 65 48 43 28 74
'NEK1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0597 (Fisher's exact test), Q value = 0.27

Table S13192.  Gene #1239: 'NEK1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
NEK1 MUTATED 0 0 1 2
NEK1 WILD-TYPE 33 31 26 17
'NEK1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.451 (Fisher's exact test), Q value = 0.78

Table S13193.  Gene #1239: 'NEK1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
NEK1 MUTATED 1 0 2 0
NEK1 WILD-TYPE 53 10 22 22
'CEACAM6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0882 (Fisher's exact test), Q value = 0.32

Table S13194.  Gene #1240: 'CEACAM6 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
CEACAM6 MUTATED 2 0 1 1
CEACAM6 WILD-TYPE 176 183 100 19
'CEACAM6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.388 (Fisher's exact test), Q value = 0.72

Table S13195.  Gene #1240: 'CEACAM6 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
CEACAM6 MUTATED 1 0 3
CEACAM6 WILD-TYPE 86 80 97
'CEACAM6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S13196.  Gene #1240: 'CEACAM6 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
CEACAM6 MUTATED 1 1 1
CEACAM6 WILD-TYPE 88 159 137
'CEACAM6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.297 (Fisher's exact test), Q value = 0.63

Table S13197.  Gene #1240: 'CEACAM6 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
CEACAM6 MUTATED 3 0 0
CEACAM6 WILD-TYPE 179 133 72
'CEACAM6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.16 (Fisher's exact test), Q value = 0.45

Table S13198.  Gene #1240: 'CEACAM6 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
CEACAM6 MUTATED 1 2 1 0
CEACAM6 WILD-TYPE 111 94 91 186
'CEACAM6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.111 (Fisher's exact test), Q value = 0.37

Table S13199.  Gene #1240: 'CEACAM6 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
CEACAM6 MUTATED 1 1 1 1 0 0 0
CEACAM6 WILD-TYPE 59 49 48 39 63 125 99
'CEACAM6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0276 (Fisher's exact test), Q value = 0.17

Table S13200.  Gene #1240: 'CEACAM6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
CEACAM6 MUTATED 4 0 0 0
CEACAM6 WILD-TYPE 126 78 68 196

Figure S3436.  Get High-res Image Gene #1240: 'CEACAM6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'CEACAM6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.54 (Fisher's exact test), Q value = 0.86

Table S13201.  Gene #1240: 'CEACAM6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
CEACAM6 MUTATED 0 0 1 1 1 0 1 0 0
CEACAM6 WILD-TYPE 40 62 27 79 68 48 42 28 74
'MED14 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.011 (Fisher's exact test), Q value = 0.1

Table S13202.  Gene #1241: 'MED14 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
MED14 MUTATED 5 1 0 1
MED14 WILD-TYPE 41 57 64 42

Figure S3437.  Get High-res Image Gene #1241: 'MED14 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'MED14 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00043 (Fisher's exact test), Q value = 0.014

Table S13203.  Gene #1241: 'MED14 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
MED14 MUTATED 6 0 1
MED14 WILD-TYPE 45 83 76

Figure S3438.  Get High-res Image Gene #1241: 'MED14 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'MED14 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00015 (Fisher's exact test), Q value = 0.0069

Table S13204.  Gene #1241: 'MED14 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
MED14 MUTATED 14 0 3 2
MED14 WILD-TYPE 164 183 98 18

Figure S3439.  Get High-res Image Gene #1241: 'MED14 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'MED14 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.617 (Fisher's exact test), Q value = 0.92

Table S13205.  Gene #1241: 'MED14 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
MED14 MUTATED 5 2 5
MED14 WILD-TYPE 82 78 95
'MED14 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00296 (Fisher's exact test), Q value = 0.049

Table S13206.  Gene #1241: 'MED14 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
MED14 MUTATED 4 1 11
MED14 WILD-TYPE 85 159 127

Figure S3440.  Get High-res Image Gene #1241: 'MED14 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'MED14 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.234 (Fisher's exact test), Q value = 0.55

Table S13207.  Gene #1241: 'MED14 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
MED14 MUTATED 11 3 2
MED14 WILD-TYPE 171 130 70
'MED14 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.825 (Fisher's exact test), Q value = 1

Table S13208.  Gene #1241: 'MED14 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
MED14 MUTATED 4 4 5 6
MED14 WILD-TYPE 108 92 87 180
'MED14 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.127 (Fisher's exact test), Q value = 0.4

Table S13209.  Gene #1241: 'MED14 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
MED14 MUTATED 2 1 4 1 4 1 6
MED14 WILD-TYPE 58 49 45 39 59 124 93
'MED14 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.565 (Fisher's exact test), Q value = 0.87

Table S13210.  Gene #1241: 'MED14 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
MED14 MUTATED 7 4 1 7
MED14 WILD-TYPE 123 74 67 189
'MED14 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0358 (Fisher's exact test), Q value = 0.2

Table S13211.  Gene #1241: 'MED14 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
MED14 MUTATED 1 5 1 2 7 0 2 1 0
MED14 WILD-TYPE 39 57 27 78 62 48 41 27 74

Figure S3441.  Get High-res Image Gene #1241: 'MED14 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'MED14 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.179 (Fisher's exact test), Q value = 0.48

Table S13212.  Gene #1241: 'MED14 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
MED14 MUTATED 2 3 0 3
MED14 WILD-TYPE 31 28 27 16
'MED14 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.355 (Fisher's exact test), Q value = 0.68

Table S13213.  Gene #1241: 'MED14 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
MED14 MUTATED 6 1 1 0
MED14 WILD-TYPE 48 9 23 22
'AGTR2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.446 (Fisher's exact test), Q value = 0.77

Table S13214.  Gene #1242: 'AGTR2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
AGTR2 MUTATED 1 1 1 3
AGTR2 WILD-TYPE 45 57 63 40
'AGTR2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.244 (Fisher's exact test), Q value = 0.57

Table S13215.  Gene #1242: 'AGTR2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
AGTR2 MUTATED 3 1 2
AGTR2 WILD-TYPE 48 82 75
'AGTR2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0772 (Fisher's exact test), Q value = 0.3

Table S13216.  Gene #1242: 'AGTR2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
AGTR2 MUTATED 11 4 1 1
AGTR2 WILD-TYPE 167 179 100 19
'AGTR2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.177 (Fisher's exact test), Q value = 0.48

Table S13217.  Gene #1242: 'AGTR2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
AGTR2 MUTATED 4 1 7
AGTR2 WILD-TYPE 83 79 93
'AGTR2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.521 (Fisher's exact test), Q value = 0.84

Table S13218.  Gene #1242: 'AGTR2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
AGTR2 MUTATED 1 6 5
AGTR2 WILD-TYPE 88 154 133
'AGTR2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.538 (Fisher's exact test), Q value = 0.86

Table S13219.  Gene #1242: 'AGTR2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
AGTR2 MUTATED 5 6 1
AGTR2 WILD-TYPE 177 127 71
'AGTR2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.559 (Fisher's exact test), Q value = 0.87

Table S13220.  Gene #1242: 'AGTR2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
AGTR2 MUTATED 2 5 4 6
AGTR2 WILD-TYPE 110 91 88 180
'AGTR2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.487 (Fisher's exact test), Q value = 0.81

Table S13221.  Gene #1242: 'AGTR2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
AGTR2 MUTATED 2 1 4 2 2 2 4
AGTR2 WILD-TYPE 58 49 45 38 61 123 95
'AGTR2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.351 (Fisher's exact test), Q value = 0.68

Table S13222.  Gene #1242: 'AGTR2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
AGTR2 MUTATED 6 4 1 4
AGTR2 WILD-TYPE 124 74 67 192
'AGTR2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.487 (Fisher's exact test), Q value = 0.81

Table S13223.  Gene #1242: 'AGTR2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
AGTR2 MUTATED 1 4 1 4 3 1 1 0 0
AGTR2 WILD-TYPE 39 58 27 76 66 47 42 28 74
'AGTR2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.136 (Fisher's exact test), Q value = 0.41

Table S13224.  Gene #1242: 'AGTR2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
AGTR2 MUTATED 1 0 0 2
AGTR2 WILD-TYPE 32 31 27 17
'AGTR2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S13225.  Gene #1242: 'AGTR2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
AGTR2 MUTATED 2 0 1 0
AGTR2 WILD-TYPE 52 10 23 22
'COL4A6 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.343 (Fisher's exact test), Q value = 0.67

Table S13226.  Gene #1243: 'COL4A6 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
COL4A6 MUTATED 2 3 1 4
COL4A6 WILD-TYPE 44 55 63 39
'COL4A6 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.199 (Fisher's exact test), Q value = 0.5

Table S13227.  Gene #1243: 'COL4A6 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
COL4A6 MUTATED 3 6 1
COL4A6 WILD-TYPE 48 77 76
'COL4A6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.187 (Fisher's exact test), Q value = 0.49

Table S13228.  Gene #1243: 'COL4A6 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
COL4A6 MUTATED 13 7 2 0
COL4A6 WILD-TYPE 165 176 99 20
'COL4A6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.398 (Fisher's exact test), Q value = 0.72

Table S13229.  Gene #1243: 'COL4A6 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
COL4A6 MUTATED 6 2 4
COL4A6 WILD-TYPE 81 78 96
'COL4A6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0515 (Fisher's exact test), Q value = 0.24

Table S13230.  Gene #1243: 'COL4A6 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
COL4A6 MUTATED 2 4 11
COL4A6 WILD-TYPE 87 156 127
'COL4A6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0801 (Fisher's exact test), Q value = 0.3

Table S13231.  Gene #1243: 'COL4A6 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
COL4A6 MUTATED 11 6 0
COL4A6 WILD-TYPE 171 127 72
'COL4A6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0719 (Fisher's exact test), Q value = 0.29

Table S13232.  Gene #1243: 'COL4A6 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
COL4A6 MUTATED 2 2 8 10
COL4A6 WILD-TYPE 110 94 84 176
'COL4A6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.392 (Fisher's exact test), Q value = 0.72

Table S13233.  Gene #1243: 'COL4A6 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
COL4A6 MUTATED 1 2 4 0 5 5 5
COL4A6 WILD-TYPE 59 48 45 40 58 120 94
'COL4A6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0858 (Fisher's exact test), Q value = 0.32

Table S13234.  Gene #1243: 'COL4A6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
COL4A6 MUTATED 8 4 0 5
COL4A6 WILD-TYPE 122 74 68 191
'COL4A6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.478 (Fisher's exact test), Q value = 0.81

Table S13235.  Gene #1243: 'COL4A6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
COL4A6 MUTATED 1 4 2 5 2 1 0 1 1
COL4A6 WILD-TYPE 39 58 26 75 67 47 43 27 73
'COL4A6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.644 (Fisher's exact test), Q value = 0.93

Table S13236.  Gene #1243: 'COL4A6 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
COL4A6 MUTATED 1 2 0 1
COL4A6 WILD-TYPE 32 29 27 18
'COL4A6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.868 (Fisher's exact test), Q value = 1

Table S13237.  Gene #1243: 'COL4A6 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
COL4A6 MUTATED 3 0 1 0
COL4A6 WILD-TYPE 51 10 23 22
'KRTAP12-3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.278 (Fisher's exact test), Q value = 0.61

Table S13238.  Gene #1244: 'KRTAP12-3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
KRTAP12-3 MUTATED 3 0 0 0
KRTAP12-3 WILD-TYPE 175 183 101 20
'KRTAP12-3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.113 (Fisher's exact test), Q value = 0.37

Table S13239.  Gene #1244: 'KRTAP12-3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
KRTAP12-3 MUTATED 0 0 3
KRTAP12-3 WILD-TYPE 87 80 97
'KRTAP12-3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.793 (Fisher's exact test), Q value = 1

Table S13240.  Gene #1244: 'KRTAP12-3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
KRTAP12-3 MUTATED 0 2 1
KRTAP12-3 WILD-TYPE 89 158 137
'KRTAP12-3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.593 (Fisher's exact test), Q value = 0.9

Table S13241.  Gene #1244: 'KRTAP12-3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
KRTAP12-3 MUTATED 1 2 0
KRTAP12-3 WILD-TYPE 181 131 72
'KRTAP12-3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0146 (Fisher's exact test), Q value = 0.12

Table S13242.  Gene #1244: 'KRTAP12-3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
KRTAP12-3 MUTATED 0 3 0 0
KRTAP12-3 WILD-TYPE 112 93 92 186

Figure S3442.  Get High-res Image Gene #1244: 'KRTAP12-3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'KRTAP12-3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0841 (Fisher's exact test), Q value = 0.31

Table S13243.  Gene #1244: 'KRTAP12-3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
KRTAP12-3 MUTATED 0 1 1 1 0 0 0
KRTAP12-3 WILD-TYPE 60 49 48 39 63 125 99
'KRTAP12-3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.643 (Fisher's exact test), Q value = 0.93

Table S13244.  Gene #1244: 'KRTAP12-3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
KRTAP12-3 MUTATED 2 0 0 1
KRTAP12-3 WILD-TYPE 128 78 68 195
'KRTAP12-3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.842 (Fisher's exact test), Q value = 1

Table S13245.  Gene #1244: 'KRTAP12-3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
KRTAP12-3 MUTATED 0 0 0 1 1 0 1 0 0
KRTAP12-3 WILD-TYPE 40 62 28 79 68 48 42 28 74
'EMR3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00557 (Fisher's exact test), Q value = 0.068

Table S13246.  Gene #1245: 'EMR3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
EMR3 MUTATED 2 0 0 4
EMR3 WILD-TYPE 44 58 64 39

Figure S3443.  Get High-res Image Gene #1245: 'EMR3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'EMR3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0712 (Fisher's exact test), Q value = 0.29

Table S13247.  Gene #1245: 'EMR3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
EMR3 MUTATED 4 1 1
EMR3 WILD-TYPE 47 82 76
'EMR3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0853 (Fisher's exact test), Q value = 0.32

Table S13248.  Gene #1245: 'EMR3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
EMR3 MUTATED 11 3 2 1
EMR3 WILD-TYPE 167 180 99 19
'EMR3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.739 (Fisher's exact test), Q value = 1

Table S13249.  Gene #1245: 'EMR3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
EMR3 MUTATED 4 2 5
EMR3 WILD-TYPE 83 78 95
'EMR3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.834 (Fisher's exact test), Q value = 1

Table S13250.  Gene #1245: 'EMR3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
EMR3 MUTATED 3 7 4
EMR3 WILD-TYPE 86 153 134
'EMR3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S13251.  Gene #1245: 'EMR3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
EMR3 MUTATED 7 5 2
EMR3 WILD-TYPE 175 128 70
'EMR3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.103 (Fisher's exact test), Q value = 0.35

Table S13252.  Gene #1245: 'EMR3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
EMR3 MUTATED 1 7 3 6
EMR3 WILD-TYPE 111 89 89 180
'EMR3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00827 (Fisher's exact test), Q value = 0.085

Table S13253.  Gene #1245: 'EMR3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
EMR3 MUTATED 2 3 5 0 0 1 6
EMR3 WILD-TYPE 58 47 44 40 63 124 93

Figure S3444.  Get High-res Image Gene #1245: 'EMR3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'EMR3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.332 (Fisher's exact test), Q value = 0.66

Table S13254.  Gene #1245: 'EMR3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
EMR3 MUTATED 6 2 0 8
EMR3 WILD-TYPE 124 76 68 188
'EMR3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00168 (Fisher's exact test), Q value = 0.034

Table S13255.  Gene #1245: 'EMR3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
EMR3 MUTATED 4 1 3 0 5 0 0 2 1
EMR3 WILD-TYPE 36 61 25 80 64 48 43 26 73

Figure S3445.  Get High-res Image Gene #1245: 'EMR3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'STAU2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.12 (Fisher's exact test), Q value = 0.39

Table S13256.  Gene #1246: 'STAU2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
STAU2 MUTATED 2 0 0 1
STAU2 WILD-TYPE 44 58 64 42
'STAU2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.252 (Fisher's exact test), Q value = 0.58

Table S13257.  Gene #1246: 'STAU2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
STAU2 MUTATED 2 1 0
STAU2 WILD-TYPE 49 82 77
'STAU2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0112 (Fisher's exact test), Q value = 0.1

Table S13258.  Gene #1246: 'STAU2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
STAU2 MUTATED 9 1 0 0
STAU2 WILD-TYPE 169 182 101 20

Figure S3446.  Get High-res Image Gene #1246: 'STAU2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'STAU2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.204 (Fisher's exact test), Q value = 0.51

Table S13259.  Gene #1246: 'STAU2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
STAU2 MUTATED 3 0 4
STAU2 WILD-TYPE 84 80 96
'STAU2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0242 (Fisher's exact test), Q value = 0.16

Table S13260.  Gene #1246: 'STAU2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
STAU2 MUTATED 0 1 6
STAU2 WILD-TYPE 89 159 132

Figure S3447.  Get High-res Image Gene #1246: 'STAU2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'STAU2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.545 (Fisher's exact test), Q value = 0.86

Table S13261.  Gene #1246: 'STAU2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
STAU2 MUTATED 5 1 1
STAU2 WILD-TYPE 177 132 71
'STAU2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.519 (Fisher's exact test), Q value = 0.84

Table S13262.  Gene #1246: 'STAU2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
STAU2 MUTATED 1 3 3 3
STAU2 WILD-TYPE 111 93 89 183
'STAU2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0789 (Fisher's exact test), Q value = 0.3

Table S13263.  Gene #1246: 'STAU2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
STAU2 MUTATED 0 1 4 0 2 1 2
STAU2 WILD-TYPE 60 49 45 40 61 124 97
'STAU2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.471 (Fisher's exact test), Q value = 0.8

Table S13264.  Gene #1246: 'STAU2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
STAU2 MUTATED 4 2 0 3
STAU2 WILD-TYPE 126 76 68 193
'STAU2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.868 (Fisher's exact test), Q value = 1

Table S13265.  Gene #1246: 'STAU2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
STAU2 MUTATED 0 3 0 1 2 1 1 0 1
STAU2 WILD-TYPE 40 59 28 79 67 47 42 28 73
'STAU2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0836 (Fisher's exact test), Q value = 0.31

Table S13266.  Gene #1246: 'STAU2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
STAU2 MUTATED 0 1 0 2
STAU2 WILD-TYPE 33 30 27 17
'STAU2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.841 (Fisher's exact test), Q value = 1

Table S13267.  Gene #1246: 'STAU2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
STAU2 MUTATED 2 0 0 1
STAU2 WILD-TYPE 52 10 24 21
'GGA2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0179 (Fisher's exact test), Q value = 0.13

Table S13268.  Gene #1247: 'GGA2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
GGA2 MUTATED 5 0 1 2
GGA2 WILD-TYPE 41 58 63 41

Figure S3448.  Get High-res Image Gene #1247: 'GGA2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'GGA2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0141 (Fisher's exact test), Q value = 0.12

Table S13269.  Gene #1247: 'GGA2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
GGA2 MUTATED 5 3 0
GGA2 WILD-TYPE 46 80 77

Figure S3449.  Get High-res Image Gene #1247: 'GGA2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'GGA2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00123 (Fisher's exact test), Q value = 0.028

Table S13270.  Gene #1247: 'GGA2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
GGA2 MUTATED 11 1 0 1
GGA2 WILD-TYPE 167 182 101 19

Figure S3450.  Get High-res Image Gene #1247: 'GGA2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'GGA2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.327 (Fisher's exact test), Q value = 0.66

Table S13271.  Gene #1247: 'GGA2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
GGA2 MUTATED 3 0 2
GGA2 WILD-TYPE 84 80 98
'GGA2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.603 (Fisher's exact test), Q value = 0.91

Table S13272.  Gene #1247: 'GGA2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
GGA2 MUTATED 1 4 5
GGA2 WILD-TYPE 88 156 133
'GGA2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.4 (Fisher's exact test), Q value = 0.73

Table S13273.  Gene #1247: 'GGA2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
GGA2 MUTATED 3 4 3
GGA2 WILD-TYPE 179 129 69
'GGA2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.3 (Fisher's exact test), Q value = 0.63

Table S13274.  Gene #1247: 'GGA2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
GGA2 MUTATED 1 3 1 8
GGA2 WILD-TYPE 111 93 91 178
'GGA2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.03 (Fisher's exact test), Q value = 0.18

Table S13275.  Gene #1247: 'GGA2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
GGA2 MUTATED 0 1 3 0 0 2 7
GGA2 WILD-TYPE 60 49 46 40 63 123 92

Figure S3451.  Get High-res Image Gene #1247: 'GGA2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'GGA2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0318 (Fisher's exact test), Q value = 0.18

Table S13276.  Gene #1247: 'GGA2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
GGA2 MUTATED 2 0 0 10
GGA2 WILD-TYPE 128 78 68 186

Figure S3452.  Get High-res Image Gene #1247: 'GGA2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'GGA2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.15 (Fisher's exact test), Q value = 0.43

Table S13277.  Gene #1247: 'GGA2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
GGA2 MUTATED 1 0 1 1 5 0 0 1 3
GGA2 WILD-TYPE 39 62 27 79 64 48 43 27 71
'ATRNL1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.112 (Fisher's exact test), Q value = 0.37

Table S13278.  Gene #1248: 'ATRNL1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ATRNL1 MUTATED 3 2 0 3
ATRNL1 WILD-TYPE 43 56 64 40
'ATRNL1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.31 (Fisher's exact test), Q value = 0.64

Table S13279.  Gene #1248: 'ATRNL1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ATRNL1 MUTATED 4 2 2
ATRNL1 WILD-TYPE 47 81 75
'ATRNL1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00075 (Fisher's exact test), Q value = 0.02

Table S13280.  Gene #1248: 'ATRNL1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ATRNL1 MUTATED 20 4 2 1
ATRNL1 WILD-TYPE 158 179 99 19

Figure S3453.  Get High-res Image Gene #1248: 'ATRNL1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ATRNL1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.726 (Fisher's exact test), Q value = 0.99

Table S13281.  Gene #1248: 'ATRNL1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ATRNL1 MUTATED 7 4 8
ATRNL1 WILD-TYPE 80 76 92
'ATRNL1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0418 (Fisher's exact test), Q value = 0.22

Table S13282.  Gene #1248: 'ATRNL1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ATRNL1 MUTATED 2 6 13
ATRNL1 WILD-TYPE 87 154 125

Figure S3454.  Get High-res Image Gene #1248: 'ATRNL1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'ATRNL1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0418 (Fisher's exact test), Q value = 0.22

Table S13283.  Gene #1248: 'ATRNL1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ATRNL1 MUTATED 13 8 0
ATRNL1 WILD-TYPE 169 125 72

Figure S3455.  Get High-res Image Gene #1248: 'ATRNL1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'ATRNL1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.57 (Fisher's exact test), Q value = 0.88

Table S13284.  Gene #1248: 'ATRNL1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ATRNL1 MUTATED 6 8 5 8
ATRNL1 WILD-TYPE 106 88 87 178
'ATRNL1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0146 (Fisher's exact test), Q value = 0.12

Table S13285.  Gene #1248: 'ATRNL1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ATRNL1 MUTATED 4 3 9 1 2 3 5
ATRNL1 WILD-TYPE 56 47 40 39 61 122 94

Figure S3456.  Get High-res Image Gene #1248: 'ATRNL1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ATRNL1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.156 (Fisher's exact test), Q value = 0.44

Table S13286.  Gene #1248: 'ATRNL1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ATRNL1 MUTATED 12 2 4 8
ATRNL1 WILD-TYPE 118 76 64 188
'ATRNL1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.165 (Fisher's exact test), Q value = 0.46

Table S13287.  Gene #1248: 'ATRNL1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ATRNL1 MUTATED 4 2 0 3 9 3 2 1 2
ATRNL1 WILD-TYPE 36 60 28 77 60 45 41 27 72
'ATRNL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.231 (Fisher's exact test), Q value = 0.55

Table S13288.  Gene #1248: 'ATRNL1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
ATRNL1 MUTATED 3 0 1 2
ATRNL1 WILD-TYPE 30 31 26 17
'ATRNL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.92 (Fisher's exact test), Q value = 1

Table S13289.  Gene #1248: 'ATRNL1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
ATRNL1 MUTATED 3 0 2 1
ATRNL1 WILD-TYPE 51 10 22 21
'OSR1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.867 (Fisher's exact test), Q value = 1

Table S13290.  Gene #1249: 'OSR1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
OSR1 MUTATED 2 1 1 0
OSR1 WILD-TYPE 176 182 100 20
'OSR1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S13291.  Gene #1249: 'OSR1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
OSR1 MUTATED 1 1 2
OSR1 WILD-TYPE 86 79 98
'OSR1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.611 (Fisher's exact test), Q value = 0.91

Table S13292.  Gene #1249: 'OSR1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
OSR1 MUTATED 0 1 2
OSR1 WILD-TYPE 89 159 136
'OSR1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S13293.  Gene #1249: 'OSR1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
OSR1 MUTATED 2 1 0
OSR1 WILD-TYPE 180 132 72
'OSR1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0293 (Fisher's exact test), Q value = 0.17

Table S13294.  Gene #1249: 'OSR1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
OSR1 MUTATED 1 3 0 0
OSR1 WILD-TYPE 111 93 92 186

Figure S3457.  Get High-res Image Gene #1249: 'OSR1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'OSR1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00231 (Fisher's exact test), Q value = 0.041

Table S13295.  Gene #1249: 'OSR1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
OSR1 MUTATED 0 3 0 1 0 0 0
OSR1 WILD-TYPE 60 47 49 39 63 125 99

Figure S3458.  Get High-res Image Gene #1249: 'OSR1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'OSR1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0665 (Fisher's exact test), Q value = 0.28

Table S13296.  Gene #1249: 'OSR1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
OSR1 MUTATED 3 0 1 0
OSR1 WILD-TYPE 127 78 67 196
'OSR1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0208 (Fisher's exact test), Q value = 0.15

Table S13297.  Gene #1249: 'OSR1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
OSR1 MUTATED 2 0 1 0 0 0 1 0 0
OSR1 WILD-TYPE 38 62 27 80 69 48 42 28 74

Figure S3459.  Get High-res Image Gene #1249: 'OSR1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'IRS4 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.153 (Fisher's exact test), Q value = 0.44

Table S13298.  Gene #1250: 'IRS4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
IRS4 MUTATED 5 2 1 3
IRS4 WILD-TYPE 41 56 63 40
'IRS4 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0171 (Fisher's exact test), Q value = 0.13

Table S13299.  Gene #1250: 'IRS4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
IRS4 MUTATED 7 2 2
IRS4 WILD-TYPE 44 81 75

Figure S3460.  Get High-res Image Gene #1250: 'IRS4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'IRS4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0145 (Fisher's exact test), Q value = 0.12

Table S13300.  Gene #1250: 'IRS4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
IRS4 MUTATED 20 6 4 1
IRS4 WILD-TYPE 158 177 97 19

Figure S3461.  Get High-res Image Gene #1250: 'IRS4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'IRS4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.168 (Fisher's exact test), Q value = 0.46

Table S13301.  Gene #1250: 'IRS4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
IRS4 MUTATED 5 3 11
IRS4 WILD-TYPE 82 77 89
'IRS4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.277 (Fisher's exact test), Q value = 0.6

Table S13302.  Gene #1250: 'IRS4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
IRS4 MUTATED 3 14 11
IRS4 WILD-TYPE 86 146 127
'IRS4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.354 (Fisher's exact test), Q value = 0.68

Table S13303.  Gene #1250: 'IRS4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
IRS4 MUTATED 10 13 5
IRS4 WILD-TYPE 172 120 67
'IRS4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.204 (Fisher's exact test), Q value = 0.51

Table S13304.  Gene #1250: 'IRS4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
IRS4 MUTATED 4 10 4 13
IRS4 WILD-TYPE 108 86 88 173
'IRS4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00052 (Fisher's exact test), Q value = 0.016

Table S13305.  Gene #1250: 'IRS4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
IRS4 MUTATED 2 2 9 2 4 1 11
IRS4 WILD-TYPE 58 48 40 38 59 124 88

Figure S3462.  Get High-res Image Gene #1250: 'IRS4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'IRS4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.139 (Fisher's exact test), Q value = 0.41

Table S13306.  Gene #1250: 'IRS4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
IRS4 MUTATED 12 3 1 12
IRS4 WILD-TYPE 118 75 67 184
'IRS4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00384 (Fisher's exact test), Q value = 0.056

Table S13307.  Gene #1250: 'IRS4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
IRS4 MUTATED 4 4 0 3 12 1 0 0 4
IRS4 WILD-TYPE 36 58 28 77 57 47 43 28 70

Figure S3463.  Get High-res Image Gene #1250: 'IRS4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'IRS4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0572 (Fisher's exact test), Q value = 0.26

Table S13308.  Gene #1250: 'IRS4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
IRS4 MUTATED 0 1 2 3
IRS4 WILD-TYPE 33 30 25 16
'IRS4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.195 (Fisher's exact test), Q value = 0.5

Table S13309.  Gene #1250: 'IRS4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
IRS4 MUTATED 2 1 3 0
IRS4 WILD-TYPE 52 9 21 22
'CEL MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00493 (Fisher's exact test), Q value = 0.063

Table S13310.  Gene #1251: 'CEL MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
CEL MUTATED 8 0 0 0
CEL WILD-TYPE 170 183 101 20

Figure S3464.  Get High-res Image Gene #1251: 'CEL MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'CEL MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.067 (Fisher's exact test), Q value = 0.28

Table S13311.  Gene #1251: 'CEL MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
CEL MUTATED 2 0 6
CEL WILD-TYPE 85 80 94
'CEL MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.66 (Fisher's exact test), Q value = 0.95

Table S13312.  Gene #1251: 'CEL MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
CEL MUTATED 2 2 4
CEL WILD-TYPE 87 158 134
'CEL MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.812 (Fisher's exact test), Q value = 1

Table S13313.  Gene #1251: 'CEL MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
CEL MUTATED 4 2 2
CEL WILD-TYPE 178 131 70
'CEL MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00803 (Fisher's exact test), Q value = 0.084

Table S13314.  Gene #1251: 'CEL MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
CEL MUTATED 0 5 3 1
CEL WILD-TYPE 112 91 89 185

Figure S3465.  Get High-res Image Gene #1251: 'CEL MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'CEL MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S13315.  Gene #1251: 'CEL MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
CEL MUTATED 0 0 7 1 0 0 1
CEL WILD-TYPE 60 50 42 39 63 125 98

Figure S3466.  Get High-res Image Gene #1251: 'CEL MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CEL MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0819 (Fisher's exact test), Q value = 0.31

Table S13316.  Gene #1251: 'CEL MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
CEL MUTATED 6 1 0 2
CEL WILD-TYPE 124 77 68 194
'CEL MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.132 (Fisher's exact test), Q value = 0.41

Table S13317.  Gene #1251: 'CEL MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
CEL MUTATED 1 1 0 0 5 0 1 0 1
CEL WILD-TYPE 39 61 28 80 64 48 42 28 73
'CEL MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00371 (Fisher's exact test), Q value = 0.055

Table S13318.  Gene #1251: 'CEL MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
CEL MUTATED 1 0 0 4
CEL WILD-TYPE 32 31 27 15

Figure S3467.  Get High-res Image Gene #1251: 'CEL MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'CEL MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.576 (Fisher's exact test), Q value = 0.88

Table S13319.  Gene #1251: 'CEL MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
CEL MUTATED 3 0 2 0
CEL WILD-TYPE 51 10 22 22
'ZHX2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.147 (Fisher's exact test), Q value = 0.43

Table S13320.  Gene #1252: 'ZHX2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ZHX2 MUTATED 5 1 2 1
ZHX2 WILD-TYPE 41 57 62 42
'ZHX2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.376 (Fisher's exact test), Q value = 0.71

Table S13321.  Gene #1252: 'ZHX2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ZHX2 MUTATED 4 3 2
ZHX2 WILD-TYPE 47 80 75
'ZHX2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00148 (Fisher's exact test), Q value = 0.031

Table S13322.  Gene #1252: 'ZHX2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ZHX2 MUTATED 16 3 1 0
ZHX2 WILD-TYPE 162 180 100 20

Figure S3468.  Get High-res Image Gene #1252: 'ZHX2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ZHX2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0718 (Fisher's exact test), Q value = 0.29

Table S13323.  Gene #1252: 'ZHX2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ZHX2 MUTATED 5 0 5
ZHX2 WILD-TYPE 82 80 95
'ZHX2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.393 (Fisher's exact test), Q value = 0.72

Table S13324.  Gene #1252: 'ZHX2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ZHX2 MUTATED 2 5 8
ZHX2 WILD-TYPE 87 155 130
'ZHX2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.783 (Fisher's exact test), Q value = 1

Table S13325.  Gene #1252: 'ZHX2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ZHX2 MUTATED 8 4 3
ZHX2 WILD-TYPE 174 129 69
'ZHX2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0295 (Fisher's exact test), Q value = 0.18

Table S13326.  Gene #1252: 'ZHX2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ZHX2 MUTATED 0 4 5 11
ZHX2 WILD-TYPE 112 92 87 175

Figure S3469.  Get High-res Image Gene #1252: 'ZHX2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'ZHX2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00181 (Fisher's exact test), Q value = 0.035

Table S13327.  Gene #1252: 'ZHX2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ZHX2 MUTATED 0 1 7 0 1 3 8
ZHX2 WILD-TYPE 60 49 42 40 62 122 91

Figure S3470.  Get High-res Image Gene #1252: 'ZHX2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ZHX2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0743 (Fisher's exact test), Q value = 0.29

Table S13328.  Gene #1252: 'ZHX2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ZHX2 MUTATED 5 1 0 12
ZHX2 WILD-TYPE 125 77 68 184
'ZHX2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00336 (Fisher's exact test), Q value = 0.052

Table S13329.  Gene #1252: 'ZHX2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ZHX2 MUTATED 0 3 1 0 9 1 0 0 4
ZHX2 WILD-TYPE 40 59 27 80 60 47 43 28 70

Figure S3471.  Get High-res Image Gene #1252: 'ZHX2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'HEATR3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.19 (Fisher's exact test), Q value = 0.49

Table S13330.  Gene #1253: 'HEATR3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
HEATR3 MUTATED 0 0 1 2
HEATR3 WILD-TYPE 46 58 63 41
'HEATR3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S13331.  Gene #1253: 'HEATR3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
HEATR3 MUTATED 1 1 1
HEATR3 WILD-TYPE 50 82 76
'HEATR3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.277 (Fisher's exact test), Q value = 0.6

Table S13332.  Gene #1253: 'HEATR3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
HEATR3 MUTATED 7 2 1 0
HEATR3 WILD-TYPE 171 181 100 20
'HEATR3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.206 (Fisher's exact test), Q value = 0.51

Table S13333.  Gene #1253: 'HEATR3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
HEATR3 MUTATED 3 0 4
HEATR3 WILD-TYPE 84 80 96
'HEATR3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.831 (Fisher's exact test), Q value = 1

Table S13334.  Gene #1253: 'HEATR3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
HEATR3 MUTATED 1 4 4
HEATR3 WILD-TYPE 88 156 134
'HEATR3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.822 (Fisher's exact test), Q value = 1

Table S13335.  Gene #1253: 'HEATR3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
HEATR3 MUTATED 4 4 1
HEATR3 WILD-TYPE 178 129 71
'HEATR3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.519 (Fisher's exact test), Q value = 0.84

Table S13336.  Gene #1253: 'HEATR3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
HEATR3 MUTATED 1 3 3 3
HEATR3 WILD-TYPE 111 93 89 183
'HEATR3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.177 (Fisher's exact test), Q value = 0.48

Table S13337.  Gene #1253: 'HEATR3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
HEATR3 MUTATED 1 1 3 0 3 1 1
HEATR3 WILD-TYPE 59 49 46 40 60 124 98
'HEATR3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.655 (Fisher's exact test), Q value = 0.94

Table S13338.  Gene #1253: 'HEATR3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
HEATR3 MUTATED 2 3 1 3
HEATR3 WILD-TYPE 128 75 67 193
'HEATR3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.185 (Fisher's exact test), Q value = 0.49

Table S13339.  Gene #1253: 'HEATR3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
HEATR3 MUTATED 0 2 0 0 4 0 0 1 2
HEATR3 WILD-TYPE 40 60 28 80 65 48 43 27 72
'STAT3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.247 (Fisher's exact test), Q value = 0.57

Table S13340.  Gene #1254: 'STAT3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
STAT3 MUTATED 6 3 0 0
STAT3 WILD-TYPE 172 180 101 20
'STAT3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.604 (Fisher's exact test), Q value = 0.91

Table S13341.  Gene #1254: 'STAT3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
STAT3 MUTATED 3 1 4
STAT3 WILD-TYPE 84 79 96
'STAT3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.904 (Fisher's exact test), Q value = 1

Table S13342.  Gene #1254: 'STAT3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
STAT3 MUTATED 1 4 3
STAT3 WILD-TYPE 88 156 135
'STAT3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.566 (Fisher's exact test), Q value = 0.87

Table S13343.  Gene #1254: 'STAT3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
STAT3 MUTATED 5 3 0
STAT3 WILD-TYPE 177 130 72
'STAT3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.039 (Fisher's exact test), Q value = 0.21

Table S13344.  Gene #1254: 'STAT3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
STAT3 MUTATED 2 0 5 2
STAT3 WILD-TYPE 110 96 87 184

Figure S3472.  Get High-res Image Gene #1254: 'STAT3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'STAT3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00493 (Fisher's exact test), Q value = 0.063

Table S13345.  Gene #1254: 'STAT3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
STAT3 MUTATED 4 0 3 0 0 0 2
STAT3 WILD-TYPE 56 50 46 40 63 125 97

Figure S3473.  Get High-res Image Gene #1254: 'STAT3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'STAT3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0195 (Fisher's exact test), Q value = 0.14

Table S13346.  Gene #1254: 'STAT3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
STAT3 MUTATED 7 0 0 2
STAT3 WILD-TYPE 123 78 68 194

Figure S3474.  Get High-res Image Gene #1254: 'STAT3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'STAT3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.743 (Fisher's exact test), Q value = 1

Table S13347.  Gene #1254: 'STAT3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
STAT3 MUTATED 2 2 1 1 1 0 1 0 1
STAT3 WILD-TYPE 38 60 27 79 68 48 42 28 73
'STAT3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 7e-05 (Fisher's exact test), Q value = 0.0041

Table S13348.  Gene #1254: 'STAT3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
STAT3 MUTATED 0 0 0 5
STAT3 WILD-TYPE 33 31 27 14

Figure S3475.  Get High-res Image Gene #1254: 'STAT3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'STAT3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.759 (Fisher's exact test), Q value = 1

Table S13349.  Gene #1254: 'STAT3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
STAT3 MUTATED 4 0 1 0
STAT3 WILD-TYPE 50 10 23 22
'STK35 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0223 (Fisher's exact test), Q value = 0.15

Table S13350.  Gene #1255: 'STK35 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
STK35 MUTATED 6 0 0 0
STK35 WILD-TYPE 172 183 101 20

Figure S3476.  Get High-res Image Gene #1255: 'STK35 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'STK35 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.385 (Fisher's exact test), Q value = 0.71

Table S13351.  Gene #1255: 'STK35 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
STK35 MUTATED 2 0 3
STK35 WILD-TYPE 85 80 97
'STK35 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.105 (Fisher's exact test), Q value = 0.36

Table S13352.  Gene #1255: 'STK35 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
STK35 MUTATED 2 0 3
STK35 WILD-TYPE 87 160 135
'STK35 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.1 (Fisher's exact test), Q value = 0.35

Table S13353.  Gene #1255: 'STK35 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
STK35 MUTATED 5 0 0
STK35 WILD-TYPE 177 133 72
'STK35 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0831 (Fisher's exact test), Q value = 0.31

Table S13354.  Gene #1255: 'STK35 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
STK35 MUTATED 0 2 3 1
STK35 WILD-TYPE 112 94 89 185
'STK35 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.045 (Fisher's exact test), Q value = 0.23

Table S13355.  Gene #1255: 'STK35 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
STK35 MUTATED 0 1 3 0 1 0 1
STK35 WILD-TYPE 60 49 46 40 62 125 98

Figure S3477.  Get High-res Image Gene #1255: 'STK35 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'STK35 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.742 (Fisher's exact test), Q value = 1

Table S13356.  Gene #1255: 'STK35 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
STK35 MUTATED 3 1 0 2
STK35 WILD-TYPE 127 77 68 194
'STK35 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.509 (Fisher's exact test), Q value = 0.83

Table S13357.  Gene #1255: 'STK35 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
STK35 MUTATED 1 1 0 1 3 0 0 0 0
STK35 WILD-TYPE 39 61 28 79 66 48 43 28 74
'ASB11 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00326 (Fisher's exact test), Q value = 0.051

Table S13358.  Gene #1256: 'ASB11 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ASB11 MUTATED 7 0 0 1
ASB11 WILD-TYPE 171 183 101 19

Figure S3478.  Get High-res Image Gene #1256: 'ASB11 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ASB11 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.113 (Fisher's exact test), Q value = 0.37

Table S13359.  Gene #1256: 'ASB11 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ASB11 MUTATED 3 0 5
ASB11 WILD-TYPE 84 80 95
'ASB11 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0786 (Fisher's exact test), Q value = 0.3

Table S13360.  Gene #1256: 'ASB11 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ASB11 MUTATED 0 1 5
ASB11 WILD-TYPE 89 159 133
'ASB11 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.663 (Fisher's exact test), Q value = 0.95

Table S13361.  Gene #1256: 'ASB11 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ASB11 MUTATED 4 2 0
ASB11 WILD-TYPE 178 131 72
'ASB11 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00088 (Fisher's exact test), Q value = 0.022

Table S13362.  Gene #1256: 'ASB11 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ASB11 MUTATED 0 5 3 0
ASB11 WILD-TYPE 112 91 89 186

Figure S3479.  Get High-res Image Gene #1256: 'ASB11 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'ASB11 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00027 (Fisher's exact test), Q value = 0.01

Table S13363.  Gene #1256: 'ASB11 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ASB11 MUTATED 0 1 5 0 2 0 0
ASB11 WILD-TYPE 60 49 44 40 61 125 99

Figure S3480.  Get High-res Image Gene #1256: 'ASB11 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ASB11 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.33 (Fisher's exact test), Q value = 0.66

Table S13364.  Gene #1256: 'ASB11 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ASB11 MUTATED 4 2 0 2
ASB11 WILD-TYPE 126 76 68 194
'ASB11 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.468 (Fisher's exact test), Q value = 0.79

Table S13365.  Gene #1256: 'ASB11 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ASB11 MUTATED 2 2 0 0 2 0 1 0 1
ASB11 WILD-TYPE 38 60 28 80 67 48 42 28 73
'C7ORF50 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.384 (Fisher's exact test), Q value = 0.71

Table S13366.  Gene #1257: 'C7ORF50 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
C7ORF50 MUTATED 4 1 0 0
C7ORF50 WILD-TYPE 174 182 101 20
'C7ORF50 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0373 (Fisher's exact test), Q value = 0.2

Table S13367.  Gene #1257: 'C7ORF50 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
C7ORF50 MUTATED 0 0 4
C7ORF50 WILD-TYPE 87 80 96

Figure S3481.  Get High-res Image Gene #1257: 'C7ORF50 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'C7ORF50 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.685 (Fisher's exact test), Q value = 0.96

Table S13368.  Gene #1257: 'C7ORF50 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
C7ORF50 MUTATED 0 2 2
C7ORF50 WILD-TYPE 89 158 136
'C7ORF50 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.328 (Fisher's exact test), Q value = 0.66

Table S13369.  Gene #1257: 'C7ORF50 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
C7ORF50 MUTATED 1 3 0
C7ORF50 WILD-TYPE 181 130 72
'C7ORF50 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0223 (Fisher's exact test), Q value = 0.15

Table S13370.  Gene #1257: 'C7ORF50 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
C7ORF50 MUTATED 0 4 0 1
C7ORF50 WILD-TYPE 112 92 92 185

Figure S3482.  Get High-res Image Gene #1257: 'C7ORF50 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'C7ORF50 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00202 (Fisher's exact test), Q value = 0.038

Table S13371.  Gene #1257: 'C7ORF50 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
C7ORF50 MUTATED 0 0 4 0 0 1 0
C7ORF50 WILD-TYPE 60 50 45 40 63 124 99

Figure S3483.  Get High-res Image Gene #1257: 'C7ORF50 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'C7ORF50 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.127 (Fisher's exact test), Q value = 0.4

Table S13372.  Gene #1257: 'C7ORF50 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
C7ORF50 MUTATED 4 0 0 1
C7ORF50 WILD-TYPE 126 78 68 195
'C7ORF50 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.262 (Fisher's exact test), Q value = 0.59

Table S13373.  Gene #1257: 'C7ORF50 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
C7ORF50 MUTATED 1 0 0 0 3 0 0 0 1
C7ORF50 WILD-TYPE 39 62 28 80 66 48 43 28 73
'ATP13A5 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.206 (Fisher's exact test), Q value = 0.51

Table S13374.  Gene #1258: 'ATP13A5 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ATP13A5 MUTATED 2 0 3 3
ATP13A5 WILD-TYPE 44 58 61 40
'ATP13A5 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S13375.  Gene #1258: 'ATP13A5 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ATP13A5 MUTATED 2 3 3
ATP13A5 WILD-TYPE 49 80 74
'ATP13A5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00505 (Fisher's exact test), Q value = 0.064

Table S13376.  Gene #1258: 'ATP13A5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ATP13A5 MUTATED 19 6 2 0
ATP13A5 WILD-TYPE 159 177 99 20

Figure S3484.  Get High-res Image Gene #1258: 'ATP13A5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ATP13A5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00317 (Fisher's exact test), Q value = 0.05

Table S13377.  Gene #1258: 'ATP13A5 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ATP13A5 MUTATED 9 0 10
ATP13A5 WILD-TYPE 78 80 90

Figure S3485.  Get High-res Image Gene #1258: 'ATP13A5 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'ATP13A5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.297 (Fisher's exact test), Q value = 0.63

Table S13378.  Gene #1258: 'ATP13A5 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ATP13A5 MUTATED 3 7 11
ATP13A5 WILD-TYPE 86 153 127
'ATP13A5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.382 (Fisher's exact test), Q value = 0.71

Table S13379.  Gene #1258: 'ATP13A5 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ATP13A5 MUTATED 13 6 2
ATP13A5 WILD-TYPE 169 127 70
'ATP13A5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.014 (Fisher's exact test), Q value = 0.12

Table S13380.  Gene #1258: 'ATP13A5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ATP13A5 MUTATED 1 8 9 9
ATP13A5 WILD-TYPE 111 88 83 177

Figure S3486.  Get High-res Image Gene #1258: 'ATP13A5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'ATP13A5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.104 (Fisher's exact test), Q value = 0.36

Table S13381.  Gene #1258: 'ATP13A5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ATP13A5 MUTATED 2 5 6 1 5 3 5
ATP13A5 WILD-TYPE 58 45 43 39 58 122 94
'ATP13A5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.328 (Fisher's exact test), Q value = 0.66

Table S13382.  Gene #1258: 'ATP13A5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ATP13A5 MUTATED 10 5 1 11
ATP13A5 WILD-TYPE 120 73 67 185
'ATP13A5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.409 (Fisher's exact test), Q value = 0.74

Table S13383.  Gene #1258: 'ATP13A5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ATP13A5 MUTATED 2 5 3 5 7 1 1 0 3
ATP13A5 WILD-TYPE 38 57 25 75 62 47 42 28 71
'ATP13A5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0332 (Fisher's exact test), Q value = 0.19

Table S13384.  Gene #1258: 'ATP13A5 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
ATP13A5 MUTATED 1 3 0 4
ATP13A5 WILD-TYPE 32 28 27 15

Figure S3487.  Get High-res Image Gene #1258: 'ATP13A5 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'ATP13A5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.22 (Fisher's exact test), Q value = 0.53

Table S13385.  Gene #1258: 'ATP13A5 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
ATP13A5 MUTATED 7 0 1 0
ATP13A5 WILD-TYPE 47 10 23 22
'ZNF43 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00331 (Fisher's exact test), Q value = 0.052

Table S13386.  Gene #1259: 'ZNF43 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ZNF43 MUTATED 5 1 0 5
ZNF43 WILD-TYPE 41 57 64 38

Figure S3488.  Get High-res Image Gene #1259: 'ZNF43 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'ZNF43 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0689 (Fisher's exact test), Q value = 0.28

Table S13387.  Gene #1259: 'ZNF43 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ZNF43 MUTATED 6 2 3
ZNF43 WILD-TYPE 45 81 74
'ZNF43 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.145 (Fisher's exact test), Q value = 0.42

Table S13388.  Gene #1259: 'ZNF43 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ZNF43 MUTATED 13 6 2 0
ZNF43 WILD-TYPE 165 177 99 20
'ZNF43 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S13389.  Gene #1259: 'ZNF43 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ZNF43 MUTATED 3 3 4
ZNF43 WILD-TYPE 84 77 96
'ZNF43 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.39 (Fisher's exact test), Q value = 0.72

Table S13390.  Gene #1259: 'ZNF43 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ZNF43 MUTATED 2 8 9
ZNF43 WILD-TYPE 87 152 129
'ZNF43 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.581 (Fisher's exact test), Q value = 0.89

Table S13391.  Gene #1259: 'ZNF43 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ZNF43 MUTATED 11 6 2
ZNF43 WILD-TYPE 171 127 70
'ZNF43 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.25 (Fisher's exact test), Q value = 0.58

Table S13392.  Gene #1259: 'ZNF43 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ZNF43 MUTATED 2 3 6 11
ZNF43 WILD-TYPE 110 93 86 175
'ZNF43 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.728 (Fisher's exact test), Q value = 1

Table S13393.  Gene #1259: 'ZNF43 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ZNF43 MUTATED 3 2 3 1 3 3 7
ZNF43 WILD-TYPE 57 48 46 39 60 122 92
'ZNF43 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.942 (Fisher's exact test), Q value = 1

Table S13394.  Gene #1259: 'ZNF43 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ZNF43 MUTATED 6 3 2 10
ZNF43 WILD-TYPE 124 75 66 186
'ZNF43 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.175 (Fisher's exact test), Q value = 0.47

Table S13395.  Gene #1259: 'ZNF43 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ZNF43 MUTATED 3 3 1 1 6 2 1 3 1
ZNF43 WILD-TYPE 37 59 27 79 63 46 42 25 73
'ZNF43 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00166 (Fisher's exact test), Q value = 0.034

Table S13396.  Gene #1259: 'ZNF43 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
ZNF43 MUTATED 0 0 1 4
ZNF43 WILD-TYPE 33 31 26 15

Figure S3489.  Get High-res Image Gene #1259: 'ZNF43 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'ZNF43 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.822 (Fisher's exact test), Q value = 1

Table S13397.  Gene #1259: 'ZNF43 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
ZNF43 MUTATED 2 0 1 2
ZNF43 WILD-TYPE 52 10 23 20
'INPPL1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0852 (Fisher's exact test), Q value = 0.32

Table S13398.  Gene #1260: 'INPPL1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
INPPL1 MUTATED 3 0 1 0
INPPL1 WILD-TYPE 43 58 63 43
'INPPL1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0393 (Fisher's exact test), Q value = 0.21

Table S13399.  Gene #1260: 'INPPL1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
INPPL1 MUTATED 3 0 1
INPPL1 WILD-TYPE 48 83 76

Figure S3490.  Get High-res Image Gene #1260: 'INPPL1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'INPPL1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.225 (Fisher's exact test), Q value = 0.54

Table S13400.  Gene #1260: 'INPPL1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
INPPL1 MUTATED 6 2 5 0
INPPL1 WILD-TYPE 172 181 96 20
'INPPL1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.309 (Fisher's exact test), Q value = 0.64

Table S13401.  Gene #1260: 'INPPL1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
INPPL1 MUTATED 5 1 4
INPPL1 WILD-TYPE 82 79 96
'INPPL1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.045 (Fisher's exact test), Q value = 0.23

Table S13402.  Gene #1260: 'INPPL1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
INPPL1 MUTATED 1 2 8
INPPL1 WILD-TYPE 88 158 130

Figure S3491.  Get High-res Image Gene #1260: 'INPPL1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'INPPL1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.312 (Fisher's exact test), Q value = 0.64

Table S13403.  Gene #1260: 'INPPL1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
INPPL1 MUTATED 8 2 1
INPPL1 WILD-TYPE 174 131 71
'INPPL1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.362 (Fisher's exact test), Q value = 0.69

Table S13404.  Gene #1260: 'INPPL1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
INPPL1 MUTATED 1 4 4 5
INPPL1 WILD-TYPE 111 92 88 181
'INPPL1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00468 (Fisher's exact test), Q value = 0.062

Table S13405.  Gene #1260: 'INPPL1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
INPPL1 MUTATED 0 2 6 0 0 2 4
INPPL1 WILD-TYPE 60 48 43 40 63 123 95

Figure S3492.  Get High-res Image Gene #1260: 'INPPL1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'INPPL1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.959 (Fisher's exact test), Q value = 1

Table S13406.  Gene #1260: 'INPPL1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
INPPL1 MUTATED 4 2 1 7
INPPL1 WILD-TYPE 126 76 67 189
'INPPL1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0078 (Fisher's exact test), Q value = 0.082

Table S13407.  Gene #1260: 'INPPL1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
INPPL1 MUTATED 0 2 1 2 8 0 1 0 0
INPPL1 WILD-TYPE 40 60 27 78 61 48 42 28 74

Figure S3493.  Get High-res Image Gene #1260: 'INPPL1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'INPPL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0954 (Fisher's exact test), Q value = 0.34

Table S13408.  Gene #1260: 'INPPL1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
INPPL1 MUTATED 2 0 0 2
INPPL1 WILD-TYPE 31 31 27 17
'INPPL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.869 (Fisher's exact test), Q value = 1

Table S13409.  Gene #1260: 'INPPL1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
INPPL1 MUTATED 3 0 1 0
INPPL1 WILD-TYPE 51 10 23 22
'TFAP2C MUTATION STATUS' versus 'CN_CNMF'

P value = 0.685 (Fisher's exact test), Q value = 0.96

Table S13410.  Gene #1261: 'TFAP2C MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
TFAP2C MUTATED 6 4 1 0
TFAP2C WILD-TYPE 172 179 100 20
'TFAP2C MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.481 (Fisher's exact test), Q value = 0.81

Table S13411.  Gene #1261: 'TFAP2C MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
TFAP2C MUTATED 4 1 4
TFAP2C WILD-TYPE 83 79 96
'TFAP2C MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.734 (Fisher's exact test), Q value = 1

Table S13412.  Gene #1261: 'TFAP2C MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
TFAP2C MUTATED 1 3 4
TFAP2C WILD-TYPE 88 157 134
'TFAP2C MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.29 (Fisher's exact test), Q value = 0.62

Table S13413.  Gene #1261: 'TFAP2C MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
TFAP2C MUTATED 6 2 0
TFAP2C WILD-TYPE 176 131 72
'TFAP2C MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.443 (Fisher's exact test), Q value = 0.77

Table S13414.  Gene #1261: 'TFAP2C MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
TFAP2C MUTATED 4 3 2 2
TFAP2C WILD-TYPE 108 93 90 184
'TFAP2C MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0159 (Fisher's exact test), Q value = 0.13

Table S13415.  Gene #1261: 'TFAP2C MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
TFAP2C MUTATED 4 2 3 0 0 2 0
TFAP2C WILD-TYPE 56 48 46 40 63 123 99

Figure S3494.  Get High-res Image Gene #1261: 'TFAP2C MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'TFAP2C MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.298 (Fisher's exact test), Q value = 0.63

Table S13416.  Gene #1261: 'TFAP2C MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
TFAP2C MUTATED 5 2 2 2
TFAP2C WILD-TYPE 125 76 66 194
'TFAP2C MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.473 (Fisher's exact test), Q value = 0.8

Table S13417.  Gene #1261: 'TFAP2C MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
TFAP2C MUTATED 0 3 0 2 2 2 2 0 0
TFAP2C WILD-TYPE 40 59 28 78 67 46 41 28 74
'GAD2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0179 (Fisher's exact test), Q value = 0.13

Table S13418.  Gene #1262: 'GAD2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
GAD2 MUTATED 4 0 1 0
GAD2 WILD-TYPE 42 58 63 43

Figure S3495.  Get High-res Image Gene #1262: 'GAD2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'GAD2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00642 (Fisher's exact test), Q value = 0.074

Table S13419.  Gene #1262: 'GAD2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
GAD2 MUTATED 4 0 1
GAD2 WILD-TYPE 47 83 76

Figure S3496.  Get High-res Image Gene #1262: 'GAD2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'GAD2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0231 (Fisher's exact test), Q value = 0.15

Table S13420.  Gene #1262: 'GAD2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
GAD2 MUTATED 12 2 2 0
GAD2 WILD-TYPE 166 181 99 20

Figure S3497.  Get High-res Image Gene #1262: 'GAD2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'GAD2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S13421.  Gene #1262: 'GAD2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
GAD2 MUTATED 4 3 4
GAD2 WILD-TYPE 83 77 96
'GAD2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.321 (Fisher's exact test), Q value = 0.65

Table S13422.  Gene #1262: 'GAD2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
GAD2 MUTATED 1 6 7
GAD2 WILD-TYPE 88 154 131
'GAD2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.822 (Fisher's exact test), Q value = 1

Table S13423.  Gene #1262: 'GAD2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
GAD2 MUTATED 6 6 2
GAD2 WILD-TYPE 176 127 70
'GAD2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.708 (Fisher's exact test), Q value = 0.98

Table S13424.  Gene #1262: 'GAD2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
GAD2 MUTATED 3 5 3 5
GAD2 WILD-TYPE 109 91 89 181
'GAD2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.428 (Fisher's exact test), Q value = 0.76

Table S13425.  Gene #1262: 'GAD2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
GAD2 MUTATED 2 2 3 1 3 1 4
GAD2 WILD-TYPE 58 48 46 39 60 124 95
'GAD2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.201 (Fisher's exact test), Q value = 0.51

Table S13426.  Gene #1262: 'GAD2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
GAD2 MUTATED 6 4 0 5
GAD2 WILD-TYPE 124 74 68 191
'GAD2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.013 (Fisher's exact test), Q value = 0.11

Table S13427.  Gene #1262: 'GAD2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
GAD2 MUTATED 4 2 0 1 6 2 0 0 0
GAD2 WILD-TYPE 36 60 28 79 63 46 43 28 74

Figure S3498.  Get High-res Image Gene #1262: 'GAD2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'GAD2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.557 (Fisher's exact test), Q value = 0.87

Table S13428.  Gene #1262: 'GAD2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
GAD2 MUTATED 1 2 0 0
GAD2 WILD-TYPE 32 29 27 19
'GAD2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.841 (Fisher's exact test), Q value = 1

Table S13429.  Gene #1262: 'GAD2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
GAD2 MUTATED 2 0 0 1
GAD2 WILD-TYPE 52 10 24 21
'CCDC66 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0634 (Fisher's exact test), Q value = 0.27

Table S13430.  Gene #1263: 'CCDC66 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
CCDC66 MUTATED 1 0 0 2
CCDC66 WILD-TYPE 45 58 64 41
'CCDC66 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.349 (Fisher's exact test), Q value = 0.68

Table S13431.  Gene #1263: 'CCDC66 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
CCDC66 MUTATED 1 0 2
CCDC66 WILD-TYPE 50 83 75
'CCDC66 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00203 (Fisher's exact test), Q value = 0.038

Table S13432.  Gene #1263: 'CCDC66 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
CCDC66 MUTATED 11 1 0 0
CCDC66 WILD-TYPE 167 182 101 20

Figure S3499.  Get High-res Image Gene #1263: 'CCDC66 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'CCDC66 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.479 (Fisher's exact test), Q value = 0.81

Table S13433.  Gene #1263: 'CCDC66 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
CCDC66 MUTATED 4 1 4
CCDC66 WILD-TYPE 83 79 96
'CCDC66 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.911 (Fisher's exact test), Q value = 1

Table S13434.  Gene #1263: 'CCDC66 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
CCDC66 MUTATED 2 3 4
CCDC66 WILD-TYPE 87 157 134
'CCDC66 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.366 (Fisher's exact test), Q value = 0.7

Table S13435.  Gene #1263: 'CCDC66 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
CCDC66 MUTATED 6 3 0
CCDC66 WILD-TYPE 176 130 72
'CCDC66 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.143 (Fisher's exact test), Q value = 0.42

Table S13436.  Gene #1263: 'CCDC66 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
CCDC66 MUTATED 2 2 6 3
CCDC66 WILD-TYPE 110 94 86 183
'CCDC66 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 9e-05 (Fisher's exact test), Q value = 0.0048

Table S13437.  Gene #1263: 'CCDC66 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
CCDC66 MUTATED 3 0 7 0 1 0 2
CCDC66 WILD-TYPE 57 50 42 40 62 125 97

Figure S3500.  Get High-res Image Gene #1263: 'CCDC66 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CCDC66 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.861 (Fisher's exact test), Q value = 1

Table S13438.  Gene #1263: 'CCDC66 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
CCDC66 MUTATED 4 3 1 5
CCDC66 WILD-TYPE 126 75 67 191
'CCDC66 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.28 (Fisher's exact test), Q value = 0.61

Table S13439.  Gene #1263: 'CCDC66 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
CCDC66 MUTATED 1 2 1 2 5 0 1 1 0
CCDC66 WILD-TYPE 39 60 27 78 64 48 42 27 74
'CCDC66 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0238 (Fisher's exact test), Q value = 0.16

Table S13440.  Gene #1263: 'CCDC66 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
CCDC66 MUTATED 1 0 0 3
CCDC66 WILD-TYPE 32 31 27 16

Figure S3501.  Get High-res Image Gene #1263: 'CCDC66 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'CCDC66 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.868 (Fisher's exact test), Q value = 1

Table S13441.  Gene #1263: 'CCDC66 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
CCDC66 MUTATED 3 0 1 0
CCDC66 WILD-TYPE 51 10 23 22
'C10ORF119 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.234 (Fisher's exact test), Q value = 0.55

Table S13442.  Gene #1264: 'C10ORF119 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
C10ORF119 MUTATED 6 1 2 0
C10ORF119 WILD-TYPE 172 182 99 20
'C10ORF119 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.712 (Fisher's exact test), Q value = 0.98

Table S13443.  Gene #1264: 'C10ORF119 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
C10ORF119 MUTATED 3 1 3
C10ORF119 WILD-TYPE 84 79 97
'C10ORF119 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.508 (Fisher's exact test), Q value = 0.83

Table S13444.  Gene #1264: 'C10ORF119 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
C10ORF119 MUTATED 0 3 3
C10ORF119 WILD-TYPE 89 157 135
'C10ORF119 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.205 (Fisher's exact test), Q value = 0.51

Table S13445.  Gene #1264: 'C10ORF119 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
C10ORF119 MUTATED 1 4 1
C10ORF119 WILD-TYPE 181 129 71
'C10ORF119 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.601 (Fisher's exact test), Q value = 0.9

Table S13446.  Gene #1264: 'C10ORF119 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
C10ORF119 MUTATED 2 3 2 2
C10ORF119 WILD-TYPE 110 93 90 184
'C10ORF119 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0388 (Fisher's exact test), Q value = 0.21

Table S13447.  Gene #1264: 'C10ORF119 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
C10ORF119 MUTATED 0 4 2 0 1 1 1
C10ORF119 WILD-TYPE 60 46 47 40 62 124 98

Figure S3502.  Get High-res Image Gene #1264: 'C10ORF119 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'C10ORF119 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S13448.  Gene #1264: 'C10ORF119 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
C10ORF119 MUTATED 3 1 1 4
C10ORF119 WILD-TYPE 127 77 67 192
'C10ORF119 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.119 (Fisher's exact test), Q value = 0.38

Table S13449.  Gene #1264: 'C10ORF119 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
C10ORF119 MUTATED 1 0 2 3 0 0 2 0 1
C10ORF119 WILD-TYPE 39 62 26 77 69 48 41 28 73
'ZMYND8 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0603 (Fisher's exact test), Q value = 0.27

Table S13450.  Gene #1265: 'ZMYND8 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ZMYND8 MUTATED 3 1 0 3
ZMYND8 WILD-TYPE 43 57 64 40
'ZMYND8 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.546 (Fisher's exact test), Q value = 0.86

Table S13451.  Gene #1265: 'ZMYND8 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ZMYND8 MUTATED 3 2 2
ZMYND8 WILD-TYPE 48 81 75
'ZMYND8 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00247 (Fisher's exact test), Q value = 0.043

Table S13452.  Gene #1265: 'ZMYND8 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ZMYND8 MUTATED 18 3 5 2
ZMYND8 WILD-TYPE 160 180 96 18

Figure S3503.  Get High-res Image Gene #1265: 'ZMYND8 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ZMYND8 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.014 (Fisher's exact test), Q value = 0.12

Table S13453.  Gene #1265: 'ZMYND8 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ZMYND8 MUTATED 5 2 14
ZMYND8 WILD-TYPE 82 78 86

Figure S3504.  Get High-res Image Gene #1265: 'ZMYND8 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'ZMYND8 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.041 (Fisher's exact test), Q value = 0.21

Table S13454.  Gene #1265: 'ZMYND8 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ZMYND8 MUTATED 1 8 12
ZMYND8 WILD-TYPE 88 152 126

Figure S3505.  Get High-res Image Gene #1265: 'ZMYND8 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'ZMYND8 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.211 (Fisher's exact test), Q value = 0.52

Table S13455.  Gene #1265: 'ZMYND8 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ZMYND8 MUTATED 8 11 2
ZMYND8 WILD-TYPE 174 122 70
'ZMYND8 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0112 (Fisher's exact test), Q value = 0.1

Table S13456.  Gene #1265: 'ZMYND8 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ZMYND8 MUTATED 3 13 5 8
ZMYND8 WILD-TYPE 109 83 87 178

Figure S3506.  Get High-res Image Gene #1265: 'ZMYND8 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'ZMYND8 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 2e-05 (Fisher's exact test), Q value = 0.0017

Table S13457.  Gene #1265: 'ZMYND8 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ZMYND8 MUTATED 3 7 10 1 1 1 6
ZMYND8 WILD-TYPE 57 43 39 39 62 124 93

Figure S3507.  Get High-res Image Gene #1265: 'ZMYND8 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ZMYND8 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0731 (Fisher's exact test), Q value = 0.29

Table S13458.  Gene #1265: 'ZMYND8 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ZMYND8 MUTATED 13 1 3 11
ZMYND8 WILD-TYPE 117 77 65 185
'ZMYND8 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00865 (Fisher's exact test), Q value = 0.087

Table S13459.  Gene #1265: 'ZMYND8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ZMYND8 MUTATED 1 1 4 5 9 0 5 1 2
ZMYND8 WILD-TYPE 39 61 24 75 60 48 38 27 72

Figure S3508.  Get High-res Image Gene #1265: 'ZMYND8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'ZMYND8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.767 (Fisher's exact test), Q value = 1

Table S13460.  Gene #1265: 'ZMYND8 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
ZMYND8 MUTATED 2 1 2 2
ZMYND8 WILD-TYPE 31 30 25 17
'ZMYND8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0616 (Fisher's exact test), Q value = 0.27

Table S13461.  Gene #1265: 'ZMYND8 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
ZMYND8 MUTATED 1 0 4 2
ZMYND8 WILD-TYPE 53 10 20 20
'NFASC MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0632 (Fisher's exact test), Q value = 0.27

Table S13462.  Gene #1266: 'NFASC MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
NFASC MUTATED 7 2 2 4
NFASC WILD-TYPE 39 56 62 39
'NFASC MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0556 (Fisher's exact test), Q value = 0.26

Table S13463.  Gene #1266: 'NFASC MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
NFASC MUTATED 7 6 2
NFASC WILD-TYPE 44 77 75
'NFASC MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0248 (Fisher's exact test), Q value = 0.16

Table S13464.  Gene #1266: 'NFASC MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
NFASC MUTATED 21 7 5 1
NFASC WILD-TYPE 157 176 96 19

Figure S3509.  Get High-res Image Gene #1266: 'NFASC MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'NFASC MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.913 (Fisher's exact test), Q value = 1

Table S13465.  Gene #1266: 'NFASC MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
NFASC MUTATED 7 5 7
NFASC WILD-TYPE 80 75 93
'NFASC MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.138 (Fisher's exact test), Q value = 0.41

Table S13466.  Gene #1266: 'NFASC MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
NFASC MUTATED 5 8 15
NFASC WILD-TYPE 84 152 123
'NFASC MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.732 (Fisher's exact test), Q value = 1

Table S13467.  Gene #1266: 'NFASC MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
NFASC MUTATED 14 8 6
NFASC WILD-TYPE 168 125 66
'NFASC MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.43 (Fisher's exact test), Q value = 0.76

Table S13468.  Gene #1266: 'NFASC MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
NFASC MUTATED 5 8 5 17
NFASC WILD-TYPE 107 88 87 169
'NFASC MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.502 (Fisher's exact test), Q value = 0.83

Table S13469.  Gene #1266: 'NFASC MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
NFASC MUTATED 4 5 6 2 2 7 9
NFASC WILD-TYPE 56 45 43 38 61 118 90
'NFASC MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.559 (Fisher's exact test), Q value = 0.87

Table S13470.  Gene #1266: 'NFASC MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
NFASC MUTATED 9 4 3 18
NFASC WILD-TYPE 121 74 65 178
'NFASC MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.352 (Fisher's exact test), Q value = 0.68

Table S13471.  Gene #1266: 'NFASC MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
NFASC MUTATED 3 5 2 3 10 1 2 2 6
NFASC WILD-TYPE 37 57 26 77 59 47 41 26 68
'NFASC MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0241 (Fisher's exact test), Q value = 0.16

Table S13472.  Gene #1266: 'NFASC MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
NFASC MUTATED 1 0 0 3
NFASC WILD-TYPE 32 31 27 16

Figure S3510.  Get High-res Image Gene #1266: 'NFASC MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'NFASC MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S13473.  Gene #1266: 'NFASC MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
NFASC MUTATED 2 0 1 1
NFASC WILD-TYPE 52 10 23 21
'ACTA1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.123 (Fisher's exact test), Q value = 0.39

Table S13474.  Gene #1267: 'ACTA1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ACTA1 MUTATED 2 0 0 1
ACTA1 WILD-TYPE 44 58 64 42
'ACTA1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.184 (Fisher's exact test), Q value = 0.48

Table S13475.  Gene #1267: 'ACTA1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ACTA1 MUTATED 2 0 1
ACTA1 WILD-TYPE 49 83 76
'ACTA1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00635 (Fisher's exact test), Q value = 0.073

Table S13476.  Gene #1267: 'ACTA1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ACTA1 MUTATED 11 1 1 1
ACTA1 WILD-TYPE 167 182 100 19

Figure S3511.  Get High-res Image Gene #1267: 'ACTA1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ACTA1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.307 (Fisher's exact test), Q value = 0.64

Table S13477.  Gene #1267: 'ACTA1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ACTA1 MUTATED 5 1 4
ACTA1 WILD-TYPE 82 79 96
'ACTA1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.525 (Fisher's exact test), Q value = 0.85

Table S13478.  Gene #1267: 'ACTA1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ACTA1 MUTATED 1 6 5
ACTA1 WILD-TYPE 88 154 133
'ACTA1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.926 (Fisher's exact test), Q value = 1

Table S13479.  Gene #1267: 'ACTA1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ACTA1 MUTATED 5 5 2
ACTA1 WILD-TYPE 177 128 70
'ACTA1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.405 (Fisher's exact test), Q value = 0.73

Table S13480.  Gene #1267: 'ACTA1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ACTA1 MUTATED 2 3 5 4
ACTA1 WILD-TYPE 110 93 87 182
'ACTA1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00231 (Fisher's exact test), Q value = 0.041

Table S13481.  Gene #1267: 'ACTA1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ACTA1 MUTATED 1 1 6 0 3 0 3
ACTA1 WILD-TYPE 59 49 43 40 60 125 96

Figure S3512.  Get High-res Image Gene #1267: 'ACTA1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ACTA1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0956 (Fisher's exact test), Q value = 0.34

Table S13482.  Gene #1267: 'ACTA1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ACTA1 MUTATED 5 5 0 4
ACTA1 WILD-TYPE 125 73 68 192
'ACTA1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.59 (Fisher's exact test), Q value = 0.89

Table S13483.  Gene #1267: 'ACTA1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ACTA1 MUTATED 1 3 1 2 4 1 1 1 0
ACTA1 WILD-TYPE 39 59 27 78 65 47 42 27 74
'ACTA1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.49 (Fisher's exact test), Q value = 0.82

Table S13484.  Gene #1267: 'ACTA1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
ACTA1 MUTATED 3 1 0 1
ACTA1 WILD-TYPE 30 30 27 18
'ACTA1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.893 (Fisher's exact test), Q value = 1

Table S13485.  Gene #1267: 'ACTA1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
ACTA1 MUTATED 2 0 2 1
ACTA1 WILD-TYPE 52 10 22 21
'LYG1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.182 (Fisher's exact test), Q value = 0.48

Table S13486.  Gene #1268: 'LYG1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
LYG1 MUTATED 5 1 0 0
LYG1 WILD-TYPE 173 182 101 20
'LYG1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.512 (Fisher's exact test), Q value = 0.83

Table S13487.  Gene #1268: 'LYG1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
LYG1 MUTATED 2 0 1
LYG1 WILD-TYPE 85 80 99
'LYG1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.795 (Fisher's exact test), Q value = 1

Table S13488.  Gene #1268: 'LYG1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
LYG1 MUTATED 0 2 1
LYG1 WILD-TYPE 89 158 137
'LYG1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.586 (Fisher's exact test), Q value = 0.89

Table S13489.  Gene #1268: 'LYG1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
LYG1 MUTATED 1 2 0
LYG1 WILD-TYPE 181 131 72
'LYG1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.507 (Fisher's exact test), Q value = 0.83

Table S13490.  Gene #1268: 'LYG1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
LYG1 MUTATED 0 2 1 3
LYG1 WILD-TYPE 112 94 91 183
'LYG1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.268 (Fisher's exact test), Q value = 0.59

Table S13491.  Gene #1268: 'LYG1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
LYG1 MUTATED 0 0 2 0 0 1 3
LYG1 WILD-TYPE 60 50 47 40 63 124 96
'LYG1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.784 (Fisher's exact test), Q value = 1

Table S13492.  Gene #1268: 'LYG1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
LYG1 MUTATED 1 1 0 4
LYG1 WILD-TYPE 129 77 68 192
'LYG1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.438 (Fisher's exact test), Q value = 0.77

Table S13493.  Gene #1268: 'LYG1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
LYG1 MUTATED 0 1 0 0 3 0 0 0 2
LYG1 WILD-TYPE 40 61 28 80 66 48 43 28 72
'EXPH5 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00126 (Fisher's exact test), Q value = 0.029

Table S13494.  Gene #1269: 'EXPH5 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
EXPH5 MUTATED 3 0 0 5
EXPH5 WILD-TYPE 43 58 64 38

Figure S3513.  Get High-res Image Gene #1269: 'EXPH5 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'EXPH5 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0484 (Fisher's exact test), Q value = 0.23

Table S13495.  Gene #1269: 'EXPH5 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
EXPH5 MUTATED 5 1 2
EXPH5 WILD-TYPE 46 82 75

Figure S3514.  Get High-res Image Gene #1269: 'EXPH5 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'EXPH5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0104 (Fisher's exact test), Q value = 0.098

Table S13496.  Gene #1269: 'EXPH5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
EXPH5 MUTATED 17 5 2 0
EXPH5 WILD-TYPE 161 178 99 20

Figure S3515.  Get High-res Image Gene #1269: 'EXPH5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'EXPH5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0365 (Fisher's exact test), Q value = 0.2

Table S13497.  Gene #1269: 'EXPH5 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
EXPH5 MUTATED 9 1 5
EXPH5 WILD-TYPE 78 79 95

Figure S3516.  Get High-res Image Gene #1269: 'EXPH5 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'EXPH5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0845 (Fisher's exact test), Q value = 0.31

Table S13498.  Gene #1269: 'EXPH5 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
EXPH5 MUTATED 2 5 11
EXPH5 WILD-TYPE 87 155 127
'EXPH5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.111 (Fisher's exact test), Q value = 0.37

Table S13499.  Gene #1269: 'EXPH5 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
EXPH5 MUTATED 13 4 1
EXPH5 WILD-TYPE 169 129 71
'EXPH5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.521 (Fisher's exact test), Q value = 0.84

Table S13500.  Gene #1269: 'EXPH5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
EXPH5 MUTATED 3 6 6 9
EXPH5 WILD-TYPE 109 90 86 177
'EXPH5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0237 (Fisher's exact test), Q value = 0.16

Table S13501.  Gene #1269: 'EXPH5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
EXPH5 MUTATED 2 3 6 3 2 1 7
EXPH5 WILD-TYPE 58 47 43 37 61 124 92

Figure S3517.  Get High-res Image Gene #1269: 'EXPH5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'EXPH5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.233 (Fisher's exact test), Q value = 0.55

Table S13502.  Gene #1269: 'EXPH5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
EXPH5 MUTATED 6 7 1 9
EXPH5 WILD-TYPE 124 71 67 187
'EXPH5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0635 (Fisher's exact test), Q value = 0.27

Table S13503.  Gene #1269: 'EXPH5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
EXPH5 MUTATED 2 6 1 4 6 0 2 2 0
EXPH5 WILD-TYPE 38 56 27 76 63 48 41 26 74
'EXPH5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.82 (Fisher's exact test), Q value = 1

Table S13504.  Gene #1269: 'EXPH5 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
EXPH5 MUTATED 3 2 1 2
EXPH5 WILD-TYPE 30 29 26 17
'EXPH5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.22 (Fisher's exact test), Q value = 0.53

Table S13505.  Gene #1269: 'EXPH5 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
EXPH5 MUTATED 7 0 1 0
EXPH5 WILD-TYPE 47 10 23 22
'LEPRE1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0186 (Fisher's exact test), Q value = 0.14

Table S13506.  Gene #1270: 'LEPRE1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
LEPRE1 MUTATED 7 1 0 1
LEPRE1 WILD-TYPE 171 182 101 19

Figure S3518.  Get High-res Image Gene #1270: 'LEPRE1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'LEPRE1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.079 (Fisher's exact test), Q value = 0.3

Table S13507.  Gene #1270: 'LEPRE1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
LEPRE1 MUTATED 3 0 6
LEPRE1 WILD-TYPE 84 80 94
'LEPRE1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.762 (Fisher's exact test), Q value = 1

Table S13508.  Gene #1270: 'LEPRE1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
LEPRE1 MUTATED 3 3 3
LEPRE1 WILD-TYPE 86 157 135
'LEPRE1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.189 (Fisher's exact test), Q value = 0.49

Table S13509.  Gene #1270: 'LEPRE1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
LEPRE1 MUTATED 7 1 1
LEPRE1 WILD-TYPE 175 132 71
'LEPRE1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 2e-04 (Fisher's exact test), Q value = 0.0083

Table S13510.  Gene #1270: 'LEPRE1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
LEPRE1 MUTATED 0 6 3 0
LEPRE1 WILD-TYPE 112 90 89 186

Figure S3519.  Get High-res Image Gene #1270: 'LEPRE1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'LEPRE1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S13511.  Gene #1270: 'LEPRE1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
LEPRE1 MUTATED 0 0 6 2 1 0 0
LEPRE1 WILD-TYPE 60 50 43 38 62 125 99

Figure S3520.  Get High-res Image Gene #1270: 'LEPRE1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'LEPRE1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0301 (Fisher's exact test), Q value = 0.18

Table S13512.  Gene #1270: 'LEPRE1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
LEPRE1 MUTATED 6 2 0 1
LEPRE1 WILD-TYPE 124 76 68 195

Figure S3521.  Get High-res Image Gene #1270: 'LEPRE1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'LEPRE1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0194 (Fisher's exact test), Q value = 0.14

Table S13513.  Gene #1270: 'LEPRE1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
LEPRE1 MUTATED 3 3 0 0 3 0 0 0 0
LEPRE1 WILD-TYPE 37 59 28 80 66 48 43 28 74

Figure S3522.  Get High-res Image Gene #1270: 'LEPRE1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'LEPRE1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.356 (Fisher's exact test), Q value = 0.69

Table S13514.  Gene #1270: 'LEPRE1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
LEPRE1 MUTATED 1 1 0 2
LEPRE1 WILD-TYPE 32 30 27 17
'LEPRE1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.87 (Fisher's exact test), Q value = 1

Table S13515.  Gene #1270: 'LEPRE1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
LEPRE1 MUTATED 3 0 1 0
LEPRE1 WILD-TYPE 51 10 23 22
'COL6A5 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0711 (Fisher's exact test), Q value = 0.29

Table S13516.  Gene #1271: 'COL6A5 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
COL6A5 MUTATED 3 0 1 3
COL6A5 WILD-TYPE 43 58 63 40
'COL6A5 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.549 (Fisher's exact test), Q value = 0.87

Table S13517.  Gene #1271: 'COL6A5 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
COL6A5 MUTATED 3 2 2
COL6A5 WILD-TYPE 48 81 75
'COL6A5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0114 (Fisher's exact test), Q value = 0.1

Table S13518.  Gene #1271: 'COL6A5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
COL6A5 MUTATED 22 10 3 0
COL6A5 WILD-TYPE 156 173 98 20

Figure S3523.  Get High-res Image Gene #1271: 'COL6A5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'COL6A5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.196 (Fisher's exact test), Q value = 0.5

Table S13519.  Gene #1271: 'COL6A5 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
COL6A5 MUTATED 13 5 10
COL6A5 WILD-TYPE 74 75 90
'COL6A5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0532 (Fisher's exact test), Q value = 0.25

Table S13520.  Gene #1271: 'COL6A5 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
COL6A5 MUTATED 4 11 18
COL6A5 WILD-TYPE 85 149 120
'COL6A5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.941 (Fisher's exact test), Q value = 1

Table S13521.  Gene #1271: 'COL6A5 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
COL6A5 MUTATED 16 12 5
COL6A5 WILD-TYPE 166 121 67
'COL6A5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.155 (Fisher's exact test), Q value = 0.44

Table S13522.  Gene #1271: 'COL6A5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
COL6A5 MUTATED 9 10 9 8
COL6A5 WILD-TYPE 103 86 83 178
'COL6A5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00013 (Fisher's exact test), Q value = 0.0063

Table S13523.  Gene #1271: 'COL6A5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
COL6A5 MUTATED 5 3 11 0 9 3 5
COL6A5 WILD-TYPE 55 47 38 40 54 122 94

Figure S3524.  Get High-res Image Gene #1271: 'COL6A5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'COL6A5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.465 (Fisher's exact test), Q value = 0.79

Table S13524.  Gene #1271: 'COL6A5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
COL6A5 MUTATED 10 9 4 12
COL6A5 WILD-TYPE 120 69 64 184
'COL6A5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0973 (Fisher's exact test), Q value = 0.34

Table S13525.  Gene #1271: 'COL6A5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
COL6A5 MUTATED 3 6 1 3 11 2 5 0 4
COL6A5 WILD-TYPE 37 56 27 77 58 46 38 28 70
'COL6A5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.203 (Fisher's exact test), Q value = 0.51

Table S13526.  Gene #1271: 'COL6A5 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
COL6A5 MUTATED 2 4 1 4
COL6A5 WILD-TYPE 31 27 26 15
'COL6A5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.763 (Fisher's exact test), Q value = 1

Table S13527.  Gene #1271: 'COL6A5 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
COL6A5 MUTATED 4 1 3 3
COL6A5 WILD-TYPE 50 9 21 19
'RAB3C MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.788 (Fisher's exact test), Q value = 1

Table S13528.  Gene #1272: 'RAB3C MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
RAB3C MUTATED 1 0 1 1
RAB3C WILD-TYPE 45 58 63 42
'RAB3C MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S13529.  Gene #1272: 'RAB3C MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
RAB3C MUTATED 1 1 1
RAB3C WILD-TYPE 50 82 76
'RAB3C MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0398 (Fisher's exact test), Q value = 0.21

Table S13530.  Gene #1272: 'RAB3C MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
RAB3C MUTATED 9 3 1 2
RAB3C WILD-TYPE 169 180 100 18

Figure S3525.  Get High-res Image Gene #1272: 'RAB3C MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'RAB3C MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0267 (Fisher's exact test), Q value = 0.17

Table S13531.  Gene #1272: 'RAB3C MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
RAB3C MUTATED 8 1 2
RAB3C WILD-TYPE 79 79 98

Figure S3526.  Get High-res Image Gene #1272: 'RAB3C MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'RAB3C MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.939 (Fisher's exact test), Q value = 1

Table S13532.  Gene #1272: 'RAB3C MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
RAB3C MUTATED 3 5 6
RAB3C WILD-TYPE 86 155 132
'RAB3C MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.715 (Fisher's exact test), Q value = 0.99

Table S13533.  Gene #1272: 'RAB3C MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
RAB3C MUTATED 5 6 3
RAB3C WILD-TYPE 177 127 69
'RAB3C MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.321 (Fisher's exact test), Q value = 0.65

Table S13534.  Gene #1272: 'RAB3C MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
RAB3C MUTATED 1 5 3 6
RAB3C WILD-TYPE 111 91 89 180
'RAB3C MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.753 (Fisher's exact test), Q value = 1

Table S13535.  Gene #1272: 'RAB3C MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
RAB3C MUTATED 1 2 2 2 3 2 3
RAB3C WILD-TYPE 59 48 47 38 60 123 96
'RAB3C MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.174 (Fisher's exact test), Q value = 0.47

Table S13536.  Gene #1272: 'RAB3C MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
RAB3C MUTATED 4 5 0 6
RAB3C WILD-TYPE 126 73 68 190
'RAB3C MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.832 (Fisher's exact test), Q value = 1

Table S13537.  Gene #1272: 'RAB3C MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
RAB3C MUTATED 1 3 1 3 4 0 1 0 2
RAB3C WILD-TYPE 39 59 27 77 65 48 42 28 72
'RAB3C MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.628 (Fisher's exact test), Q value = 0.92

Table S13538.  Gene #1272: 'RAB3C MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
RAB3C MUTATED 0 1 1 1
RAB3C WILD-TYPE 33 30 26 18
'RAB3C MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.841 (Fisher's exact test), Q value = 1

Table S13539.  Gene #1272: 'RAB3C MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
RAB3C MUTATED 2 0 0 1
RAB3C WILD-TYPE 52 10 24 21
'MAP2K1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.408 (Fisher's exact test), Q value = 0.73

Table S13540.  Gene #1273: 'MAP2K1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
MAP2K1 MUTATED 1 0 2 2
MAP2K1 WILD-TYPE 45 58 62 41
'MAP2K1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.739 (Fisher's exact test), Q value = 1

Table S13541.  Gene #1273: 'MAP2K1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
MAP2K1 MUTATED 2 2 1
MAP2K1 WILD-TYPE 49 81 76
'MAP2K1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0311 (Fisher's exact test), Q value = 0.18

Table S13542.  Gene #1273: 'MAP2K1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
MAP2K1 MUTATED 9 1 1 0
MAP2K1 WILD-TYPE 169 182 100 20

Figure S3527.  Get High-res Image Gene #1273: 'MAP2K1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'MAP2K1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.18 (Fisher's exact test), Q value = 0.48

Table S13543.  Gene #1273: 'MAP2K1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
MAP2K1 MUTATED 4 0 3
MAP2K1 WILD-TYPE 83 80 97
'MAP2K1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.72 (Fisher's exact test), Q value = 0.99

Table S13544.  Gene #1273: 'MAP2K1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
MAP2K1 MUTATED 1 5 4
MAP2K1 WILD-TYPE 88 155 134
'MAP2K1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.839 (Fisher's exact test), Q value = 1

Table S13545.  Gene #1273: 'MAP2K1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
MAP2K1 MUTATED 4 4 2
MAP2K1 WILD-TYPE 178 129 70
'MAP2K1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00723 (Fisher's exact test), Q value = 0.079

Table S13546.  Gene #1273: 'MAP2K1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
MAP2K1 MUTATED 0 6 0 6
MAP2K1 WILD-TYPE 112 90 92 180

Figure S3528.  Get High-res Image Gene #1273: 'MAP2K1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'MAP2K1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.353 (Fisher's exact test), Q value = 0.68

Table S13547.  Gene #1273: 'MAP2K1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
MAP2K1 MUTATED 1 1 3 2 0 2 3
MAP2K1 WILD-TYPE 59 49 46 38 63 123 96
'MAP2K1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.271 (Fisher's exact test), Q value = 0.6

Table S13548.  Gene #1273: 'MAP2K1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
MAP2K1 MUTATED 3 0 1 8
MAP2K1 WILD-TYPE 127 78 67 188
'MAP2K1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0191 (Fisher's exact test), Q value = 0.14

Table S13549.  Gene #1273: 'MAP2K1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
MAP2K1 MUTATED 0 0 0 1 7 1 0 0 3
MAP2K1 WILD-TYPE 40 62 28 79 62 47 43 28 71

Figure S3529.  Get High-res Image Gene #1273: 'MAP2K1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'RRAS2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.281 (Fisher's exact test), Q value = 0.61

Table S13550.  Gene #1274: 'RRAS2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
RRAS2 MUTATED 5 2 0 0
RRAS2 WILD-TYPE 173 181 101 20
'RRAS2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.688 (Fisher's exact test), Q value = 0.97

Table S13551.  Gene #1274: 'RRAS2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
RRAS2 MUTATED 1 2 1
RRAS2 WILD-TYPE 86 78 99
'RRAS2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.508 (Fisher's exact test), Q value = 0.83

Table S13552.  Gene #1274: 'RRAS2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
RRAS2 MUTATED 0 3 3
RRAS2 WILD-TYPE 89 157 135
'RRAS2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.58 (Fisher's exact test), Q value = 0.89

Table S13553.  Gene #1274: 'RRAS2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
RRAS2 MUTATED 3 3 0
RRAS2 WILD-TYPE 179 130 72
'RRAS2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.731 (Fisher's exact test), Q value = 1

Table S13554.  Gene #1274: 'RRAS2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
RRAS2 MUTATED 3 1 1 2
RRAS2 WILD-TYPE 109 95 91 184
'RRAS2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0403 (Fisher's exact test), Q value = 0.21

Table S13555.  Gene #1274: 'RRAS2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
RRAS2 MUTATED 4 0 1 0 1 1 0
RRAS2 WILD-TYPE 56 50 48 40 62 124 99

Figure S3530.  Get High-res Image Gene #1274: 'RRAS2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'RRAS2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.387 (Fisher's exact test), Q value = 0.71

Table S13556.  Gene #1274: 'RRAS2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
RRAS2 MUTATED 4 1 0 2
RRAS2 WILD-TYPE 126 77 68 194
'RRAS2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.293 (Fisher's exact test), Q value = 0.62

Table S13557.  Gene #1274: 'RRAS2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
RRAS2 MUTATED 1 1 2 2 1 0 0 0 0
RRAS2 WILD-TYPE 39 61 26 78 68 48 43 28 74
'TMLHE MUTATION STATUS' versus 'CN_CNMF'

P value = 0.865 (Fisher's exact test), Q value = 1

Table S13558.  Gene #1275: 'TMLHE MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
TMLHE MUTATED 2 1 1 0
TMLHE WILD-TYPE 176 182 100 20
'TMLHE MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S13559.  Gene #1275: 'TMLHE MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
TMLHE MUTATED 1 1 1
TMLHE WILD-TYPE 86 79 99
'TMLHE MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.244 (Fisher's exact test), Q value = 0.57

Table S13560.  Gene #1275: 'TMLHE MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
TMLHE MUTATED 2 3 0
TMLHE WILD-TYPE 87 157 138
'TMLHE MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0439 (Fisher's exact test), Q value = 0.22

Table S13561.  Gene #1275: 'TMLHE MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
TMLHE MUTATED 0 3 2
TMLHE WILD-TYPE 182 130 70

Figure S3531.  Get High-res Image Gene #1275: 'TMLHE MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'TMLHE MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.823 (Fisher's exact test), Q value = 1

Table S13562.  Gene #1275: 'TMLHE MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
TMLHE MUTATED 2 1 0 2
TMLHE WILD-TYPE 110 95 92 184
'TMLHE MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.208 (Fisher's exact test), Q value = 0.52

Table S13563.  Gene #1275: 'TMLHE MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
TMLHE MUTATED 2 0 1 1 0 1 0
TMLHE WILD-TYPE 58 50 48 39 63 124 99
'TMLHE MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.507 (Fisher's exact test), Q value = 0.83

Table S13564.  Gene #1275: 'TMLHE MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
TMLHE MUTATED 3 0 0 2
TMLHE WILD-TYPE 127 78 68 194
'TMLHE MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.918 (Fisher's exact test), Q value = 1

Table S13565.  Gene #1275: 'TMLHE MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
TMLHE MUTATED 0 0 0 1 2 1 0 0 1
TMLHE WILD-TYPE 40 62 28 79 67 47 43 28 73
'UGT1A1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.229 (Fisher's exact test), Q value = 0.55

Table S13566.  Gene #1276: 'UGT1A1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
UGT1A1 MUTATED 2 1 0 0
UGT1A1 WILD-TYPE 44 57 64 43
'UGT1A1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.255 (Fisher's exact test), Q value = 0.58

Table S13567.  Gene #1276: 'UGT1A1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
UGT1A1 MUTATED 2 1 0
UGT1A1 WILD-TYPE 49 82 77
'UGT1A1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00196 (Fisher's exact test), Q value = 0.037

Table S13568.  Gene #1276: 'UGT1A1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
UGT1A1 MUTATED 10 0 1 0
UGT1A1 WILD-TYPE 168 183 100 20

Figure S3532.  Get High-res Image Gene #1276: 'UGT1A1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'UGT1A1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.505 (Fisher's exact test), Q value = 0.83

Table S13569.  Gene #1276: 'UGT1A1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
UGT1A1 MUTATED 1 2 4
UGT1A1 WILD-TYPE 86 78 96
'UGT1A1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S13570.  Gene #1276: 'UGT1A1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
UGT1A1 MUTATED 2 3 3
UGT1A1 WILD-TYPE 87 157 135
'UGT1A1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.223 (Fisher's exact test), Q value = 0.54

Table S13571.  Gene #1276: 'UGT1A1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
UGT1A1 MUTATED 2 3 3
UGT1A1 WILD-TYPE 180 130 69
'UGT1A1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.792 (Fisher's exact test), Q value = 1

Table S13572.  Gene #1276: 'UGT1A1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
UGT1A1 MUTATED 3 2 3 3
UGT1A1 WILD-TYPE 109 94 89 183
'UGT1A1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00612 (Fisher's exact test), Q value = 0.072

Table S13573.  Gene #1276: 'UGT1A1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
UGT1A1 MUTATED 3 0 5 0 0 1 2
UGT1A1 WILD-TYPE 57 50 44 40 63 124 97

Figure S3533.  Get High-res Image Gene #1276: 'UGT1A1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'UGT1A1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.713 (Fisher's exact test), Q value = 0.98

Table S13574.  Gene #1276: 'UGT1A1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
UGT1A1 MUTATED 5 1 1 4
UGT1A1 WILD-TYPE 125 77 67 192
'UGT1A1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.379 (Fisher's exact test), Q value = 0.71

Table S13575.  Gene #1276: 'UGT1A1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
UGT1A1 MUTATED 1 1 0 1 4 1 2 1 0
UGT1A1 WILD-TYPE 39 61 28 79 65 47 41 27 74
'UGT1A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00869 (Fisher's exact test), Q value = 0.087

Table S13576.  Gene #1276: 'UGT1A1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
UGT1A1 MUTATED 0 0 1 3
UGT1A1 WILD-TYPE 33 31 26 16

Figure S3534.  Get High-res Image Gene #1276: 'UGT1A1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'UGT1A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S13577.  Gene #1276: 'UGT1A1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
UGT1A1 MUTATED 2 0 1 1
UGT1A1 WILD-TYPE 52 10 23 21
'NCR3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.176 (Fisher's exact test), Q value = 0.48

Table S13578.  Gene #1277: 'NCR3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
NCR3 MUTATED 4 0 1 0
NCR3 WILD-TYPE 174 183 100 20
'NCR3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0383 (Fisher's exact test), Q value = 0.2

Table S13579.  Gene #1277: 'NCR3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
NCR3 MUTATED 0 0 4
NCR3 WILD-TYPE 87 80 96

Figure S3535.  Get High-res Image Gene #1277: 'NCR3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'NCR3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.284 (Fisher's exact test), Q value = 0.61

Table S13580.  Gene #1277: 'NCR3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
NCR3 MUTATED 1 3 0
NCR3 WILD-TYPE 88 157 138
'NCR3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0894 (Fisher's exact test), Q value = 0.33

Table S13581.  Gene #1277: 'NCR3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
NCR3 MUTATED 0 3 1
NCR3 WILD-TYPE 182 130 71
'NCR3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.116 (Fisher's exact test), Q value = 0.38

Table S13582.  Gene #1277: 'NCR3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
NCR3 MUTATED 0 3 1 1
NCR3 WILD-TYPE 112 93 91 185
'NCR3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0149 (Fisher's exact test), Q value = 0.12

Table S13583.  Gene #1277: 'NCR3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
NCR3 MUTATED 0 0 3 1 0 0 1
NCR3 WILD-TYPE 60 50 46 39 63 125 98

Figure S3536.  Get High-res Image Gene #1277: 'NCR3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'NCR3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.684 (Fisher's exact test), Q value = 0.96

Table S13584.  Gene #1277: 'NCR3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
NCR3 MUTATED 2 0 0 3
NCR3 WILD-TYPE 128 78 68 193
'NCR3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00361 (Fisher's exact test), Q value = 0.055

Table S13585.  Gene #1277: 'NCR3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
NCR3 MUTATED 0 0 0 0 5 0 0 0 0
NCR3 WILD-TYPE 40 62 28 80 64 48 43 28 74

Figure S3537.  Get High-res Image Gene #1277: 'NCR3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'AP1M1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.461 (Fisher's exact test), Q value = 0.79

Table S13586.  Gene #1278: 'AP1M1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
AP1M1 MUTATED 6 2 1 0
AP1M1 WILD-TYPE 172 181 100 20
'AP1M1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.635 (Fisher's exact test), Q value = 0.93

Table S13587.  Gene #1278: 'AP1M1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
AP1M1 MUTATED 2 1 4
AP1M1 WILD-TYPE 85 79 96
'AP1M1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.903 (Fisher's exact test), Q value = 1

Table S13588.  Gene #1278: 'AP1M1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
AP1M1 MUTATED 1 4 3
AP1M1 WILD-TYPE 88 156 135
'AP1M1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.895 (Fisher's exact test), Q value = 1

Table S13589.  Gene #1278: 'AP1M1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
AP1M1 MUTATED 5 2 1
AP1M1 WILD-TYPE 177 131 71
'AP1M1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.259 (Fisher's exact test), Q value = 0.58

Table S13590.  Gene #1278: 'AP1M1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
AP1M1 MUTATED 1 4 2 2
AP1M1 WILD-TYPE 111 92 90 184
'AP1M1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.044 (Fisher's exact test), Q value = 0.22

Table S13591.  Gene #1278: 'AP1M1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
AP1M1 MUTATED 2 1 4 0 0 1 1
AP1M1 WILD-TYPE 58 49 45 40 63 124 98

Figure S3538.  Get High-res Image Gene #1278: 'AP1M1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'AP1M1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0825 (Fisher's exact test), Q value = 0.31

Table S13592.  Gene #1278: 'AP1M1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
AP1M1 MUTATED 6 1 0 2
AP1M1 WILD-TYPE 124 77 68 194
'AP1M1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.162 (Fisher's exact test), Q value = 0.45

Table S13593.  Gene #1278: 'AP1M1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
AP1M1 MUTATED 2 2 1 0 2 2 0 0 0
AP1M1 WILD-TYPE 38 60 27 80 67 46 43 28 74
'AP1M1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00417 (Fisher's exact test), Q value = 0.059

Table S13594.  Gene #1278: 'AP1M1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
AP1M1 MUTATED 0 0 0 3
AP1M1 WILD-TYPE 33 31 27 16

Figure S3539.  Get High-res Image Gene #1278: 'AP1M1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'AP1M1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.842 (Fisher's exact test), Q value = 1

Table S13595.  Gene #1278: 'AP1M1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
AP1M1 MUTATED 2 0 0 1
AP1M1 WILD-TYPE 52 10 24 21
'FBXL4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.87 (Fisher's exact test), Q value = 1

Table S13596.  Gene #1279: 'FBXL4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
FBXL4 MUTATED 4 3 1 0
FBXL4 WILD-TYPE 174 180 100 20
'FBXL4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.879 (Fisher's exact test), Q value = 1

Table S13597.  Gene #1279: 'FBXL4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
FBXL4 MUTATED 2 1 3
FBXL4 WILD-TYPE 85 79 97
'FBXL4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.904 (Fisher's exact test), Q value = 1

Table S13598.  Gene #1279: 'FBXL4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
FBXL4 MUTATED 1 4 3
FBXL4 WILD-TYPE 88 156 135
'FBXL4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0597 (Fisher's exact test), Q value = 0.27

Table S13599.  Gene #1279: 'FBXL4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
FBXL4 MUTATED 2 6 0
FBXL4 WILD-TYPE 180 127 72
'FBXL4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.631 (Fisher's exact test), Q value = 0.93

Table S13600.  Gene #1279: 'FBXL4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
FBXL4 MUTATED 2 3 1 2
FBXL4 WILD-TYPE 110 93 91 184
'FBXL4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0104 (Fisher's exact test), Q value = 0.097

Table S13601.  Gene #1279: 'FBXL4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
FBXL4 MUTATED 4 2 0 1 0 0 1
FBXL4 WILD-TYPE 56 48 49 39 63 125 98

Figure S3540.  Get High-res Image Gene #1279: 'FBXL4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'FBXL4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.549 (Fisher's exact test), Q value = 0.87

Table S13602.  Gene #1279: 'FBXL4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
FBXL4 MUTATED 2 0 2 4
FBXL4 WILD-TYPE 128 78 66 192
'FBXL4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.764 (Fisher's exact test), Q value = 1

Table S13603.  Gene #1279: 'FBXL4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
FBXL4 MUTATED 0 0 0 2 2 1 2 0 1
FBXL4 WILD-TYPE 40 62 28 78 67 47 41 28 73
'KRT222 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00799 (Fisher's exact test), Q value = 0.084

Table S13604.  Gene #1280: 'KRT222 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
KRT222 MUTATED 0 0 0 3
KRT222 WILD-TYPE 46 58 64 40

Figure S3541.  Get High-res Image Gene #1280: 'KRT222 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'KRT222 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S13605.  Gene #1280: 'KRT222 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
KRT222 MUTATED 1 1 1
KRT222 WILD-TYPE 50 82 76
'KRT222 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00573 (Fisher's exact test), Q value = 0.069

Table S13606.  Gene #1280: 'KRT222 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
KRT222 MUTATED 6 0 0 1
KRT222 WILD-TYPE 172 183 101 19

Figure S3542.  Get High-res Image Gene #1280: 'KRT222 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'KRT222 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.385 (Fisher's exact test), Q value = 0.71

Table S13607.  Gene #1280: 'KRT222 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
KRT222 MUTATED 2 0 3
KRT222 WILD-TYPE 85 80 97
'KRT222 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.386 (Fisher's exact test), Q value = 0.71

Table S13608.  Gene #1280: 'KRT222 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
KRT222 MUTATED 1 2 5
KRT222 WILD-TYPE 88 158 133
'KRT222 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.159 (Fisher's exact test), Q value = 0.45

Table S13609.  Gene #1280: 'KRT222 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
KRT222 MUTATED 3 5 0
KRT222 WILD-TYPE 179 128 72
'KRT222 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S13610.  Gene #1280: 'KRT222 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
KRT222 MUTATED 2 2 1 3
KRT222 WILD-TYPE 110 94 91 183
'KRT222 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.236 (Fisher's exact test), Q value = 0.56

Table S13611.  Gene #1280: 'KRT222 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
KRT222 MUTATED 2 2 1 0 1 0 2
KRT222 WILD-TYPE 58 48 48 40 62 125 97
'KRT222 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.827 (Fisher's exact test), Q value = 1

Table S13612.  Gene #1280: 'KRT222 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
KRT222 MUTATED 3 1 0 3
KRT222 WILD-TYPE 127 77 68 193
'KRT222 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.971 (Fisher's exact test), Q value = 1

Table S13613.  Gene #1280: 'KRT222 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
KRT222 MUTATED 0 1 1 1 1 1 1 0 1
KRT222 WILD-TYPE 40 61 27 79 68 47 42 28 73
'KRT222 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.483 (Fisher's exact test), Q value = 0.81

Table S13614.  Gene #1280: 'KRT222 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
KRT222 MUTATED 2 0 1 0
KRT222 WILD-TYPE 31 31 26 19
'KRT222 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.252 (Fisher's exact test), Q value = 0.58

Table S13615.  Gene #1280: 'KRT222 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
KRT222 MUTATED 1 0 0 2
KRT222 WILD-TYPE 53 10 24 20
'CDC42BPA MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00656 (Fisher's exact test), Q value = 0.074

Table S13616.  Gene #1281: 'CDC42BPA MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
CDC42BPA MUTATED 5 1 0 4
CDC42BPA WILD-TYPE 41 57 64 39

Figure S3543.  Get High-res Image Gene #1281: 'CDC42BPA MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'CDC42BPA MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00024 (Fisher's exact test), Q value = 0.0094

Table S13617.  Gene #1281: 'CDC42BPA MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
CDC42BPA MUTATED 8 1 1
CDC42BPA WILD-TYPE 43 82 76

Figure S3544.  Get High-res Image Gene #1281: 'CDC42BPA MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'CDC42BPA MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00054 (Fisher's exact test), Q value = 0.016

Table S13618.  Gene #1281: 'CDC42BPA MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
CDC42BPA MUTATED 22 4 4 0
CDC42BPA WILD-TYPE 156 179 97 20

Figure S3545.  Get High-res Image Gene #1281: 'CDC42BPA MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'CDC42BPA MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.592 (Fisher's exact test), Q value = 0.9

Table S13619.  Gene #1281: 'CDC42BPA MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
CDC42BPA MUTATED 8 4 8
CDC42BPA WILD-TYPE 79 76 92
'CDC42BPA MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.157 (Fisher's exact test), Q value = 0.45

Table S13620.  Gene #1281: 'CDC42BPA MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
CDC42BPA MUTATED 5 7 14
CDC42BPA WILD-TYPE 84 153 124
'CDC42BPA MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.49 (Fisher's exact test), Q value = 0.82

Table S13621.  Gene #1281: 'CDC42BPA MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
CDC42BPA MUTATED 12 7 7
CDC42BPA WILD-TYPE 170 126 65
'CDC42BPA MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.482 (Fisher's exact test), Q value = 0.81

Table S13622.  Gene #1281: 'CDC42BPA MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
CDC42BPA MUTATED 6 9 6 9
CDC42BPA WILD-TYPE 106 87 86 177
'CDC42BPA MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00372 (Fisher's exact test), Q value = 0.055

Table S13623.  Gene #1281: 'CDC42BPA MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
CDC42BPA MUTATED 3 5 8 2 3 1 8
CDC42BPA WILD-TYPE 57 45 41 38 60 124 91

Figure S3546.  Get High-res Image Gene #1281: 'CDC42BPA MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CDC42BPA MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.856 (Fisher's exact test), Q value = 1

Table S13624.  Gene #1281: 'CDC42BPA MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
CDC42BPA MUTATED 10 4 3 12
CDC42BPA WILD-TYPE 120 74 65 184
'CDC42BPA MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00023 (Fisher's exact test), Q value = 0.0091

Table S13625.  Gene #1281: 'CDC42BPA MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
CDC42BPA MUTATED 5 5 1 0 12 2 3 0 1
CDC42BPA WILD-TYPE 35 57 27 80 57 46 40 28 73

Figure S3547.  Get High-res Image Gene #1281: 'CDC42BPA MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'CDC42BPA MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.359 (Fisher's exact test), Q value = 0.69

Table S13626.  Gene #1281: 'CDC42BPA MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
CDC42BPA MUTATED 1 1 0 2
CDC42BPA WILD-TYPE 32 30 27 17
'CDC42BPA MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.869 (Fisher's exact test), Q value = 1

Table S13627.  Gene #1281: 'CDC42BPA MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
CDC42BPA MUTATED 3 0 1 0
CDC42BPA WILD-TYPE 51 10 23 22
'USP44 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00107 (Fisher's exact test), Q value = 0.026

Table S13628.  Gene #1282: 'USP44 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
USP44 MUTATED 5 0 0 4
USP44 WILD-TYPE 41 58 64 39

Figure S3548.  Get High-res Image Gene #1282: 'USP44 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'USP44 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0166 (Fisher's exact test), Q value = 0.13

Table S13629.  Gene #1282: 'USP44 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
USP44 MUTATED 6 2 1
USP44 WILD-TYPE 45 81 76

Figure S3549.  Get High-res Image Gene #1282: 'USP44 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'USP44 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0315 (Fisher's exact test), Q value = 0.18

Table S13630.  Gene #1282: 'USP44 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
USP44 MUTATED 12 2 3 0
USP44 WILD-TYPE 166 181 98 20

Figure S3550.  Get High-res Image Gene #1282: 'USP44 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'USP44 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.633 (Fisher's exact test), Q value = 0.93

Table S13631.  Gene #1282: 'USP44 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
USP44 MUTATED 2 1 4
USP44 WILD-TYPE 85 79 96
'USP44 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.939 (Fisher's exact test), Q value = 1

Table S13632.  Gene #1282: 'USP44 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
USP44 MUTATED 3 5 6
USP44 WILD-TYPE 86 155 132
'USP44 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.715 (Fisher's exact test), Q value = 0.99

Table S13633.  Gene #1282: 'USP44 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
USP44 MUTATED 5 6 3
USP44 WILD-TYPE 177 127 69
'USP44 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.227 (Fisher's exact test), Q value = 0.54

Table S13634.  Gene #1282: 'USP44 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
USP44 MUTATED 2 4 1 10
USP44 WILD-TYPE 110 92 91 176
'USP44 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0517 (Fisher's exact test), Q value = 0.25

Table S13635.  Gene #1282: 'USP44 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
USP44 MUTATED 2 0 3 1 2 1 8
USP44 WILD-TYPE 58 50 46 39 61 124 91
'USP44 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.53 (Fisher's exact test), Q value = 0.85

Table S13636.  Gene #1282: 'USP44 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
USP44 MUTATED 4 1 1 9
USP44 WILD-TYPE 126 77 67 187
'USP44 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00217 (Fisher's exact test), Q value = 0.04

Table S13637.  Gene #1282: 'USP44 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
USP44 MUTATED 2 0 1 3 8 0 0 1 0
USP44 WILD-TYPE 38 62 27 77 61 48 43 27 74

Figure S3551.  Get High-res Image Gene #1282: 'USP44 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'USP44 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.192 (Fisher's exact test), Q value = 0.49

Table S13638.  Gene #1282: 'USP44 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
USP44 MUTATED 0 1 1 2
USP44 WILD-TYPE 33 30 26 17
'USP44 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.127 (Fisher's exact test), Q value = 0.4

Table S13639.  Gene #1282: 'USP44 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
USP44 MUTATED 1 0 3 0
USP44 WILD-TYPE 53 10 21 22
'PLCG2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.203 (Fisher's exact test), Q value = 0.51

Table S13640.  Gene #1283: 'PLCG2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
PLCG2 MUTATED 2 0 2 3
PLCG2 WILD-TYPE 44 58 62 40
'PLCG2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.548 (Fisher's exact test), Q value = 0.87

Table S13641.  Gene #1283: 'PLCG2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
PLCG2 MUTATED 3 2 2
PLCG2 WILD-TYPE 48 81 75
'PLCG2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00402 (Fisher's exact test), Q value = 0.058

Table S13642.  Gene #1283: 'PLCG2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
PLCG2 MUTATED 16 4 1 0
PLCG2 WILD-TYPE 162 179 100 20

Figure S3552.  Get High-res Image Gene #1283: 'PLCG2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'PLCG2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.164 (Fisher's exact test), Q value = 0.46

Table S13643.  Gene #1283: 'PLCG2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
PLCG2 MUTATED 5 1 7
PLCG2 WILD-TYPE 82 79 93
'PLCG2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.494 (Fisher's exact test), Q value = 0.82

Table S13644.  Gene #1283: 'PLCG2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
PLCG2 MUTATED 4 6 9
PLCG2 WILD-TYPE 85 154 129
'PLCG2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.818 (Fisher's exact test), Q value = 1

Table S13645.  Gene #1283: 'PLCG2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
PLCG2 MUTATED 8 8 3
PLCG2 WILD-TYPE 174 125 69
'PLCG2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.279 (Fisher's exact test), Q value = 0.61

Table S13646.  Gene #1283: 'PLCG2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
PLCG2 MUTATED 2 7 4 8
PLCG2 WILD-TYPE 110 89 88 178
'PLCG2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0657 (Fisher's exact test), Q value = 0.28

Table S13647.  Gene #1283: 'PLCG2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
PLCG2 MUTATED 2 2 6 0 3 2 6
PLCG2 WILD-TYPE 58 48 43 40 60 123 93
'PLCG2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.386 (Fisher's exact test), Q value = 0.71

Table S13648.  Gene #1283: 'PLCG2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
PLCG2 MUTATED 4 3 1 12
PLCG2 WILD-TYPE 126 75 67 184
'PLCG2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.308 (Fisher's exact test), Q value = 0.64

Table S13649.  Gene #1283: 'PLCG2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
PLCG2 MUTATED 0 3 1 3 7 0 2 1 3
PLCG2 WILD-TYPE 40 59 27 77 62 48 41 27 71
'RDBP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.01 (Fisher's exact test), Q value = 0.095

Table S13650.  Gene #1284: 'RDBP MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
RDBP MUTATED 7 0 0 0
RDBP WILD-TYPE 171 183 101 20

Figure S3553.  Get High-res Image Gene #1284: 'RDBP MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'RDBP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0663 (Fisher's exact test), Q value = 0.28

Table S13651.  Gene #1284: 'RDBP MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
RDBP MUTATED 1 0 5
RDBP WILD-TYPE 86 80 95
'RDBP MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.687 (Fisher's exact test), Q value = 0.97

Table S13652.  Gene #1284: 'RDBP MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
RDBP MUTATED 0 2 2
RDBP WILD-TYPE 89 158 136
'RDBP MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.402 (Fisher's exact test), Q value = 0.73

Table S13653.  Gene #1284: 'RDBP MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
RDBP MUTATED 3 0 1
RDBP WILD-TYPE 179 133 71
'RDBP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0834 (Fisher's exact test), Q value = 0.31

Table S13654.  Gene #1284: 'RDBP MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
RDBP MUTATED 0 4 1 2
RDBP WILD-TYPE 112 92 91 184
'RDBP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00521 (Fisher's exact test), Q value = 0.065

Table S13655.  Gene #1284: 'RDBP MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
RDBP MUTATED 0 1 4 0 0 0 2
RDBP WILD-TYPE 60 49 45 40 63 125 97

Figure S3554.  Get High-res Image Gene #1284: 'RDBP MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'RDBP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.327 (Fisher's exact test), Q value = 0.66

Table S13656.  Gene #1284: 'RDBP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
RDBP MUTATED 4 0 0 3
RDBP WILD-TYPE 126 78 68 193
'RDBP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.416 (Fisher's exact test), Q value = 0.74

Table S13657.  Gene #1284: 'RDBP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
RDBP MUTATED 1 1 1 1 3 0 0 0 0
RDBP WILD-TYPE 39 61 27 79 66 48 43 28 74
'RAPGEF2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00117 (Fisher's exact test), Q value = 0.027

Table S13658.  Gene #1285: 'RAPGEF2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
RAPGEF2 MUTATED 3 0 0 5
RAPGEF2 WILD-TYPE 43 58 64 38

Figure S3555.  Get High-res Image Gene #1285: 'RAPGEF2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'RAPGEF2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.311 (Fisher's exact test), Q value = 0.64

Table S13659.  Gene #1285: 'RAPGEF2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
RAPGEF2 MUTATED 4 2 2
RAPGEF2 WILD-TYPE 47 81 75
'RAPGEF2 MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S13660.  Gene #1285: 'RAPGEF2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
RAPGEF2 MUTATED 23 0 0 0
RAPGEF2 WILD-TYPE 155 183 101 20

Figure S3556.  Get High-res Image Gene #1285: 'RAPGEF2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'RAPGEF2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00757 (Fisher's exact test), Q value = 0.081

Table S13661.  Gene #1285: 'RAPGEF2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
RAPGEF2 MUTATED 5 0 10
RAPGEF2 WILD-TYPE 82 80 90

Figure S3557.  Get High-res Image Gene #1285: 'RAPGEF2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'RAPGEF2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0649 (Fisher's exact test), Q value = 0.28

Table S13662.  Gene #1285: 'RAPGEF2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
RAPGEF2 MUTATED 5 3 10
RAPGEF2 WILD-TYPE 84 157 128
'RAPGEF2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S13663.  Gene #1285: 'RAPGEF2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
RAPGEF2 MUTATED 9 6 3
RAPGEF2 WILD-TYPE 173 127 69
'RAPGEF2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0298 (Fisher's exact test), Q value = 0.18

Table S13664.  Gene #1285: 'RAPGEF2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
RAPGEF2 MUTATED 1 7 8 8
RAPGEF2 WILD-TYPE 111 89 84 178

Figure S3558.  Get High-res Image Gene #1285: 'RAPGEF2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'RAPGEF2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S13665.  Gene #1285: 'RAPGEF2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
RAPGEF2 MUTATED 2 3 11 0 1 1 6
RAPGEF2 WILD-TYPE 58 47 38 40 62 124 93

Figure S3559.  Get High-res Image Gene #1285: 'RAPGEF2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'RAPGEF2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.145 (Fisher's exact test), Q value = 0.42

Table S13666.  Gene #1285: 'RAPGEF2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
RAPGEF2 MUTATED 8 5 0 11
RAPGEF2 WILD-TYPE 122 73 68 185
'RAPGEF2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0471 (Fisher's exact test), Q value = 0.23

Table S13667.  Gene #1285: 'RAPGEF2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
RAPGEF2 MUTATED 3 6 3 2 6 0 1 2 1
RAPGEF2 WILD-TYPE 37 56 25 78 63 48 42 26 73

Figure S3560.  Get High-res Image Gene #1285: 'RAPGEF2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'RAPGEF2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0929 (Fisher's exact test), Q value = 0.33

Table S13668.  Gene #1285: 'RAPGEF2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
RAPGEF2 MUTATED 3 0 1 3
RAPGEF2 WILD-TYPE 30 31 26 16
'RAPGEF2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.885 (Fisher's exact test), Q value = 1

Table S13669.  Gene #1285: 'RAPGEF2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
RAPGEF2 MUTATED 5 0 1 1
RAPGEF2 WILD-TYPE 49 10 23 21
'GDA MUTATION STATUS' versus 'CN_CNMF'

P value = 0.216 (Fisher's exact test), Q value = 0.53

Table S13670.  Gene #1286: 'GDA MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
GDA MUTATED 1 4 1 1
GDA WILD-TYPE 177 179 100 19
'GDA MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.394 (Fisher's exact test), Q value = 0.72

Table S13671.  Gene #1286: 'GDA MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
GDA MUTATED 3 3 1
GDA WILD-TYPE 84 77 99
'GDA MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S13672.  Gene #1286: 'GDA MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
GDA MUTATED 1 3 3
GDA WILD-TYPE 88 157 135
'GDA MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.774 (Fisher's exact test), Q value = 1

Table S13673.  Gene #1286: 'GDA MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
GDA MUTATED 3 2 2
GDA WILD-TYPE 179 131 70
'GDA MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0426 (Fisher's exact test), Q value = 0.22

Table S13674.  Gene #1286: 'GDA MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
GDA MUTATED 3 3 1 0
GDA WILD-TYPE 109 93 91 186

Figure S3561.  Get High-res Image Gene #1286: 'GDA MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'GDA MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0145 (Fisher's exact test), Q value = 0.12

Table S13675.  Gene #1286: 'GDA MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
GDA MUTATED 0 2 1 2 2 0 0
GDA WILD-TYPE 60 48 48 38 61 125 99

Figure S3562.  Get High-res Image Gene #1286: 'GDA MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'GDA MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.034 (Fisher's exact test), Q value = 0.19

Table S13676.  Gene #1286: 'GDA MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
GDA MUTATED 4 1 2 0
GDA WILD-TYPE 126 77 66 196

Figure S3563.  Get High-res Image Gene #1286: 'GDA MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'GDA MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.199 (Fisher's exact test), Q value = 0.5

Table S13677.  Gene #1286: 'GDA MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
GDA MUTATED 2 1 0 0 1 1 2 0 0
GDA WILD-TYPE 38 61 28 80 68 47 41 28 74
'GDA MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S13678.  Gene #1286: 'GDA MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
GDA MUTATED 1 1 1 1
GDA WILD-TYPE 32 30 26 18
'GDA MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.269 (Fisher's exact test), Q value = 0.59

Table S13679.  Gene #1286: 'GDA MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
GDA MUTATED 1 1 1 1
GDA WILD-TYPE 53 9 23 21
'PEBP4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0979 (Fisher's exact test), Q value = 0.34

Table S13680.  Gene #1287: 'PEBP4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
PEBP4 MUTATED 5 0 2 0
PEBP4 WILD-TYPE 173 183 99 20
'PEBP4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.232 (Fisher's exact test), Q value = 0.55

Table S13681.  Gene #1287: 'PEBP4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
PEBP4 MUTATED 1 1 5
PEBP4 WILD-TYPE 86 79 95
'PEBP4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.509 (Fisher's exact test), Q value = 0.83

Table S13682.  Gene #1287: 'PEBP4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
PEBP4 MUTATED 0 3 3
PEBP4 WILD-TYPE 89 157 135
'PEBP4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.577 (Fisher's exact test), Q value = 0.88

Table S13683.  Gene #1287: 'PEBP4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
PEBP4 MUTATED 3 3 0
PEBP4 WILD-TYPE 179 130 72
'PEBP4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0216 (Fisher's exact test), Q value = 0.15

Table S13684.  Gene #1287: 'PEBP4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
PEBP4 MUTATED 1 3 3 0
PEBP4 WILD-TYPE 111 93 89 186

Figure S3564.  Get High-res Image Gene #1287: 'PEBP4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'PEBP4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00105 (Fisher's exact test), Q value = 0.025

Table S13685.  Gene #1287: 'PEBP4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
PEBP4 MUTATED 1 2 4 0 0 0 0
PEBP4 WILD-TYPE 59 48 45 40 63 125 99

Figure S3565.  Get High-res Image Gene #1287: 'PEBP4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'PEBP4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.368 (Fisher's exact test), Q value = 0.7

Table S13686.  Gene #1287: 'PEBP4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
PEBP4 MUTATED 3 0 2 2
PEBP4 WILD-TYPE 127 78 66 194
'PEBP4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.441 (Fisher's exact test), Q value = 0.77

Table S13687.  Gene #1287: 'PEBP4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
PEBP4 MUTATED 0 1 1 1 3 0 1 0 0
PEBP4 WILD-TYPE 40 61 27 79 66 48 42 28 74
'CYP2A6 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.309 (Fisher's exact test), Q value = 0.64

Table S13688.  Gene #1288: 'CYP2A6 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
CYP2A6 MUTATED 1 1 0 2
CYP2A6 WILD-TYPE 45 57 64 41
'CYP2A6 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S13689.  Gene #1288: 'CYP2A6 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
CYP2A6 MUTATED 1 2 1
CYP2A6 WILD-TYPE 50 81 76
'CYP2A6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.849 (Fisher's exact test), Q value = 1

Table S13690.  Gene #1288: 'CYP2A6 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
CYP2A6 MUTATED 6 4 2 0
CYP2A6 WILD-TYPE 172 179 99 20
'CYP2A6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.179 (Fisher's exact test), Q value = 0.48

Table S13691.  Gene #1288: 'CYP2A6 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
CYP2A6 MUTATED 1 5 2
CYP2A6 WILD-TYPE 86 75 98
'CYP2A6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.869 (Fisher's exact test), Q value = 1

Table S13692.  Gene #1288: 'CYP2A6 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
CYP2A6 MUTATED 2 6 4
CYP2A6 WILD-TYPE 87 154 134
'CYP2A6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.21 (Fisher's exact test), Q value = 0.52

Table S13693.  Gene #1288: 'CYP2A6 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
CYP2A6 MUTATED 6 6 0
CYP2A6 WILD-TYPE 176 127 72
'CYP2A6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.365 (Fisher's exact test), Q value = 0.69

Table S13694.  Gene #1288: 'CYP2A6 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
CYP2A6 MUTATED 5 1 3 3
CYP2A6 WILD-TYPE 107 95 89 183
'CYP2A6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0275 (Fisher's exact test), Q value = 0.17

Table S13695.  Gene #1288: 'CYP2A6 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
CYP2A6 MUTATED 5 0 3 0 1 1 2
CYP2A6 WILD-TYPE 55 50 46 40 62 124 97

Figure S3566.  Get High-res Image Gene #1288: 'CYP2A6 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CYP2A6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.757 (Fisher's exact test), Q value = 1

Table S13696.  Gene #1288: 'CYP2A6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
CYP2A6 MUTATED 5 2 1 4
CYP2A6 WILD-TYPE 125 76 67 192
'CYP2A6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.487 (Fisher's exact test), Q value = 0.81

Table S13697.  Gene #1288: 'CYP2A6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
CYP2A6 MUTATED 0 2 1 1 3 3 0 1 1
CYP2A6 WILD-TYPE 40 60 27 79 66 45 43 27 73
'CYP2A6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.356 (Fisher's exact test), Q value = 0.68

Table S13698.  Gene #1288: 'CYP2A6 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
CYP2A6 MUTATED 1 1 0 2
CYP2A6 WILD-TYPE 32 30 27 17
'CYP2A6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.052 (Fisher's exact test), Q value = 0.25

Table S13699.  Gene #1288: 'CYP2A6 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
CYP2A6 MUTATED 0 1 1 2
CYP2A6 WILD-TYPE 54 9 23 20
'DEK MUTATION STATUS' versus 'CN_CNMF'

P value = 0.442 (Fisher's exact test), Q value = 0.77

Table S13700.  Gene #1289: 'DEK MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
DEK MUTATED 4 2 0 0
DEK WILD-TYPE 174 181 101 20
'DEK MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.866 (Fisher's exact test), Q value = 1

Table S13701.  Gene #1289: 'DEK MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
DEK MUTATED 1 2 2
DEK WILD-TYPE 86 78 98
'DEK MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0786 (Fisher's exact test), Q value = 0.3

Table S13702.  Gene #1289: 'DEK MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
DEK MUTATED 0 1 5
DEK WILD-TYPE 89 159 133
'DEK MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.336 (Fisher's exact test), Q value = 0.66

Table S13703.  Gene #1289: 'DEK MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
DEK MUTATED 5 1 0
DEK WILD-TYPE 177 132 72
'DEK MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.586 (Fisher's exact test), Q value = 0.89

Table S13704.  Gene #1289: 'DEK MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
DEK MUTATED 2 2 1 1
DEK WILD-TYPE 110 94 91 185
'DEK MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.248 (Fisher's exact test), Q value = 0.57

Table S13705.  Gene #1289: 'DEK MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
DEK MUTATED 1 1 2 0 1 0 1
DEK WILD-TYPE 59 49 47 40 62 125 98
'DEK MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.106 (Fisher's exact test), Q value = 0.36

Table S13706.  Gene #1289: 'DEK MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
DEK MUTATED 3 1 1 0
DEK WILD-TYPE 127 77 67 196
'DEK MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.324 (Fisher's exact test), Q value = 0.65

Table S13707.  Gene #1289: 'DEK MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
DEK MUTATED 1 1 0 1 0 0 2 0 0
DEK WILD-TYPE 39 61 28 79 69 48 41 28 74
'HAUS1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0947 (Fisher's exact test), Q value = 0.34

Table S13708.  Gene #1290: 'HAUS1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
HAUS1 MUTATED 5 0 1 0
HAUS1 WILD-TYPE 173 183 100 20
'HAUS1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.261 (Fisher's exact test), Q value = 0.58

Table S13709.  Gene #1290: 'HAUS1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
HAUS1 MUTATED 2 2 0
HAUS1 WILD-TYPE 85 78 100
'HAUS1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.444 (Fisher's exact test), Q value = 0.77

Table S13710.  Gene #1290: 'HAUS1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
HAUS1 MUTATED 2 1 3
HAUS1 WILD-TYPE 87 159 135
'HAUS1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0673 (Fisher's exact test), Q value = 0.28

Table S13711.  Gene #1290: 'HAUS1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
HAUS1 MUTATED 3 0 3
HAUS1 WILD-TYPE 179 133 69
'HAUS1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.942 (Fisher's exact test), Q value = 1

Table S13712.  Gene #1290: 'HAUS1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
HAUS1 MUTATED 2 1 1 2
HAUS1 WILD-TYPE 110 95 91 184
'HAUS1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.313 (Fisher's exact test), Q value = 0.64

Table S13713.  Gene #1290: 'HAUS1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
HAUS1 MUTATED 2 1 0 0 1 0 2
HAUS1 WILD-TYPE 58 49 49 40 62 125 97
'HAUS1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.35 (Fisher's exact test), Q value = 0.68

Table S13714.  Gene #1290: 'HAUS1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
HAUS1 MUTATED 2 2 0 1
HAUS1 WILD-TYPE 128 76 68 195
'HAUS1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.738 (Fisher's exact test), Q value = 1

Table S13715.  Gene #1290: 'HAUS1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
HAUS1 MUTATED 1 0 0 2 1 1 0 0 0
HAUS1 WILD-TYPE 39 62 28 78 68 47 43 28 74
'DBF4B MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.121 (Fisher's exact test), Q value = 0.39

Table S13716.  Gene #1291: 'DBF4B MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
DBF4B MUTATED 2 0 0 1
DBF4B WILD-TYPE 44 58 64 42
'DBF4B MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.462 (Fisher's exact test), Q value = 0.79

Table S13717.  Gene #1291: 'DBF4B MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
DBF4B MUTATED 1 2 0
DBF4B WILD-TYPE 50 81 77
'DBF4B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.105 (Fisher's exact test), Q value = 0.36

Table S13718.  Gene #1291: 'DBF4B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
DBF4B MUTATED 6 1 0 0
DBF4B WILD-TYPE 172 182 101 20
'DBF4B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.832 (Fisher's exact test), Q value = 1

Table S13719.  Gene #1291: 'DBF4B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
DBF4B MUTATED 2 1 1
DBF4B WILD-TYPE 85 79 99
'DBF4B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.445 (Fisher's exact test), Q value = 0.77

Table S13720.  Gene #1291: 'DBF4B MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
DBF4B MUTATED 2 1 3
DBF4B WILD-TYPE 87 159 135
'DBF4B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S13721.  Gene #1291: 'DBF4B MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
DBF4B MUTATED 3 2 1
DBF4B WILD-TYPE 179 131 71
'DBF4B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.872 (Fisher's exact test), Q value = 1

Table S13722.  Gene #1291: 'DBF4B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
DBF4B MUTATED 1 1 2 3
DBF4B WILD-TYPE 111 95 90 183
'DBF4B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.642 (Fisher's exact test), Q value = 0.93

Table S13723.  Gene #1291: 'DBF4B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
DBF4B MUTATED 1 0 2 0 1 1 2
DBF4B WILD-TYPE 59 50 47 40 62 124 97
'DBF4B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.28 (Fisher's exact test), Q value = 0.61

Table S13724.  Gene #1291: 'DBF4B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
DBF4B MUTATED 1 3 0 3
DBF4B WILD-TYPE 129 75 68 193
'DBF4B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.286 (Fisher's exact test), Q value = 0.61

Table S13725.  Gene #1291: 'DBF4B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
DBF4B MUTATED 0 3 1 1 2 0 0 0 0
DBF4B WILD-TYPE 40 59 27 79 67 48 43 28 74
'PLA2G15 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.291 (Fisher's exact test), Q value = 0.62

Table S13726.  Gene #1292: 'PLA2G15 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
PLA2G15 MUTATED 3 1 1 1
PLA2G15 WILD-TYPE 175 182 100 19
'PLA2G15 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.152 (Fisher's exact test), Q value = 0.44

Table S13727.  Gene #1292: 'PLA2G15 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
PLA2G15 MUTATED 3 1 0
PLA2G15 WILD-TYPE 84 79 100
'PLA2G15 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.24 (Fisher's exact test), Q value = 0.56

Table S13728.  Gene #1292: 'PLA2G15 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
PLA2G15 MUTATED 0 2 4
PLA2G15 WILD-TYPE 89 158 134
'PLA2G15 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.76 (Fisher's exact test), Q value = 1

Table S13729.  Gene #1292: 'PLA2G15 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
PLA2G15 MUTATED 4 1 1
PLA2G15 WILD-TYPE 178 132 71
'PLA2G15 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.844 (Fisher's exact test), Q value = 1

Table S13730.  Gene #1292: 'PLA2G15 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
PLA2G15 MUTATED 1 1 2 2
PLA2G15 WILD-TYPE 111 95 90 184
'PLA2G15 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.201 (Fisher's exact test), Q value = 0.51

Table S13731.  Gene #1292: 'PLA2G15 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
PLA2G15 MUTATED 0 1 2 0 1 0 2
PLA2G15 WILD-TYPE 60 49 47 40 62 125 97
'PLA2G15 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.192 (Fisher's exact test), Q value = 0.49

Table S13732.  Gene #1292: 'PLA2G15 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
PLA2G15 MUTATED 1 2 2 1
PLA2G15 WILD-TYPE 129 76 66 195
'PLA2G15 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.654 (Fisher's exact test), Q value = 0.94

Table S13733.  Gene #1292: 'PLA2G15 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
PLA2G15 MUTATED 0 2 0 0 2 0 1 0 1
PLA2G15 WILD-TYPE 40 60 28 80 67 48 42 28 73
'PLA2G15 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.872 (Fisher's exact test), Q value = 1

Table S13734.  Gene #1292: 'PLA2G15 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
PLA2G15 MUTATED 1 1 0 1
PLA2G15 WILD-TYPE 32 30 27 18
'PLA2G15 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.84 (Fisher's exact test), Q value = 1

Table S13735.  Gene #1292: 'PLA2G15 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
PLA2G15 MUTATED 2 0 0 1
PLA2G15 WILD-TYPE 52 10 24 21
'STAT5B MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00879 (Fisher's exact test), Q value = 0.087

Table S13736.  Gene #1293: 'STAT5B MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
STAT5B MUTATED 3 0 0 3
STAT5B WILD-TYPE 43 58 64 40

Figure S3567.  Get High-res Image Gene #1293: 'STAT5B MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'STAT5B MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.072 (Fisher's exact test), Q value = 0.29

Table S13737.  Gene #1293: 'STAT5B MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
STAT5B MUTATED 4 1 1
STAT5B WILD-TYPE 47 82 76
'STAT5B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00272 (Fisher's exact test), Q value = 0.046

Table S13738.  Gene #1293: 'STAT5B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
STAT5B MUTATED 10 1 0 1
STAT5B WILD-TYPE 168 182 101 19

Figure S3568.  Get High-res Image Gene #1293: 'STAT5B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'STAT5B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.606 (Fisher's exact test), Q value = 0.91

Table S13739.  Gene #1293: 'STAT5B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
STAT5B MUTATED 3 1 4
STAT5B WILD-TYPE 84 79 96
'STAT5B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0535 (Fisher's exact test), Q value = 0.25

Table S13740.  Gene #1293: 'STAT5B MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
STAT5B MUTATED 1 3 9
STAT5B WILD-TYPE 88 157 129
'STAT5B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.317 (Fisher's exact test), Q value = 0.65

Table S13741.  Gene #1293: 'STAT5B MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
STAT5B MUTATED 9 3 1
STAT5B WILD-TYPE 173 130 71
'STAT5B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.406 (Fisher's exact test), Q value = 0.73

Table S13742.  Gene #1293: 'STAT5B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
STAT5B MUTATED 1 2 4 6
STAT5B WILD-TYPE 111 94 88 180
'STAT5B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0235 (Fisher's exact test), Q value = 0.16

Table S13743.  Gene #1293: 'STAT5B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
STAT5B MUTATED 1 1 4 0 2 0 5
STAT5B WILD-TYPE 59 49 45 40 61 125 94

Figure S3569.  Get High-res Image Gene #1293: 'STAT5B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'STAT5B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.555 (Fisher's exact test), Q value = 0.87

Table S13744.  Gene #1293: 'STAT5B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
STAT5B MUTATED 3 2 0 7
STAT5B WILD-TYPE 127 76 68 189
'STAT5B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.354 (Fisher's exact test), Q value = 0.68

Table S13745.  Gene #1293: 'STAT5B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
STAT5B MUTATED 1 3 1 2 4 0 1 0 0
STAT5B WILD-TYPE 39 59 27 78 65 48 42 28 74
'STAT5B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.355 (Fisher's exact test), Q value = 0.68

Table S13746.  Gene #1293: 'STAT5B MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
STAT5B MUTATED 1 1 0 2
STAT5B WILD-TYPE 32 30 27 17
'STAT5B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.601 (Fisher's exact test), Q value = 0.9

Table S13747.  Gene #1293: 'STAT5B MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
STAT5B MUTATED 2 1 1 0
STAT5B WILD-TYPE 52 9 23 22
'NCOA5 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.031 (Fisher's exact test), Q value = 0.18

Table S13748.  Gene #1294: 'NCOA5 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
NCOA5 MUTATED 3 0 0 1
NCOA5 WILD-TYPE 43 58 64 42

Figure S3570.  Get High-res Image Gene #1294: 'NCOA5 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'NCOA5 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00321 (Fisher's exact test), Q value = 0.051

Table S13749.  Gene #1294: 'NCOA5 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
NCOA5 MUTATED 4 0 0
NCOA5 WILD-TYPE 47 83 77

Figure S3571.  Get High-res Image Gene #1294: 'NCOA5 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'NCOA5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00167 (Fisher's exact test), Q value = 0.034

Table S13750.  Gene #1294: 'NCOA5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
NCOA5 MUTATED 11 0 2 0
NCOA5 WILD-TYPE 167 183 99 20

Figure S3572.  Get High-res Image Gene #1294: 'NCOA5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'NCOA5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.143 (Fisher's exact test), Q value = 0.42

Table S13751.  Gene #1294: 'NCOA5 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
NCOA5 MUTATED 4 0 4
NCOA5 WILD-TYPE 83 80 96
'NCOA5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.389 (Fisher's exact test), Q value = 0.72

Table S13752.  Gene #1294: 'NCOA5 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
NCOA5 MUTATED 1 4 6
NCOA5 WILD-TYPE 88 156 132
'NCOA5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.468 (Fisher's exact test), Q value = 0.8

Table S13753.  Gene #1294: 'NCOA5 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
NCOA5 MUTATED 6 2 3
NCOA5 WILD-TYPE 176 131 69
'NCOA5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0358 (Fisher's exact test), Q value = 0.2

Table S13754.  Gene #1294: 'NCOA5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
NCOA5 MUTATED 0 6 2 5
NCOA5 WILD-TYPE 112 90 90 181

Figure S3573.  Get High-res Image Gene #1294: 'NCOA5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'NCOA5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0025 (Fisher's exact test), Q value = 0.043

Table S13755.  Gene #1294: 'NCOA5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
NCOA5 MUTATED 0 3 4 1 0 0 5
NCOA5 WILD-TYPE 60 47 45 39 63 125 94

Figure S3574.  Get High-res Image Gene #1294: 'NCOA5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'NCOA5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.245 (Fisher's exact test), Q value = 0.57

Table S13756.  Gene #1294: 'NCOA5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
NCOA5 MUTATED 6 1 0 5
NCOA5 WILD-TYPE 124 77 68 191
'NCOA5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0857 (Fisher's exact test), Q value = 0.32

Table S13757.  Gene #1294: 'NCOA5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
NCOA5 MUTATED 1 1 2 0 5 1 0 1 1
NCOA5 WILD-TYPE 39 61 26 80 64 47 43 27 73
'NCOA5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.268 (Fisher's exact test), Q value = 0.59

Table S13758.  Gene #1294: 'NCOA5 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
NCOA5 MUTATED 1 0 1 2
NCOA5 WILD-TYPE 32 31 26 17
'NCOA5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.128 (Fisher's exact test), Q value = 0.4

Table S13759.  Gene #1294: 'NCOA5 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
NCOA5 MUTATED 1 0 3 0
NCOA5 WILD-TYPE 53 10 21 22
'MR1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.285 (Fisher's exact test), Q value = 0.61

Table S13760.  Gene #1295: 'MR1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
MR1 MUTATED 5 2 0 0
MR1 WILD-TYPE 173 181 101 20
'MR1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.164 (Fisher's exact test), Q value = 0.46

Table S13761.  Gene #1295: 'MR1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
MR1 MUTATED 3 2 0
MR1 WILD-TYPE 84 78 100
'MR1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S13762.  Gene #1295: 'MR1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
MR1 MUTATED 1 3 2
MR1 WILD-TYPE 88 157 136
'MR1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.579 (Fisher's exact test), Q value = 0.88

Table S13763.  Gene #1295: 'MR1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
MR1 MUTATED 3 3 0
MR1 WILD-TYPE 179 130 72
'MR1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.288 (Fisher's exact test), Q value = 0.62

Table S13764.  Gene #1295: 'MR1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
MR1 MUTATED 1 0 3 3
MR1 WILD-TYPE 111 96 89 183
'MR1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.233 (Fisher's exact test), Q value = 0.55

Table S13765.  Gene #1295: 'MR1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
MR1 MUTATED 2 0 1 0 2 0 2
MR1 WILD-TYPE 58 50 48 40 61 125 97
'MR1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.127 (Fisher's exact test), Q value = 0.4

Table S13766.  Gene #1295: 'MR1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
MR1 MUTATED 0 3 1 3
MR1 WILD-TYPE 130 75 67 193
'MR1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.698 (Fisher's exact test), Q value = 0.97

Table S13767.  Gene #1295: 'MR1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
MR1 MUTATED 1 2 0 0 2 0 1 0 1
MR1 WILD-TYPE 39 60 28 80 67 48 42 28 73
'MR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.782 (Fisher's exact test), Q value = 1

Table S13768.  Gene #1295: 'MR1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
MR1 MUTATED 1 0 1 1
MR1 WILD-TYPE 32 31 26 18
'MR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S13769.  Gene #1295: 'MR1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
MR1 MUTATED 2 0 1 0
MR1 WILD-TYPE 52 10 23 22
'FAM155B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.849 (Fisher's exact test), Q value = 1

Table S13770.  Gene #1296: 'FAM155B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
FAM155B MUTATED 3 2 2 0
FAM155B WILD-TYPE 175 181 99 20
'FAM155B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.139 (Fisher's exact test), Q value = 0.41

Table S13771.  Gene #1296: 'FAM155B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
FAM155B MUTATED 4 0 2
FAM155B WILD-TYPE 83 80 98
'FAM155B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.764 (Fisher's exact test), Q value = 1

Table S13772.  Gene #1296: 'FAM155B MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
FAM155B MUTATED 2 2 2
FAM155B WILD-TYPE 87 158 136
'FAM155B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.863 (Fisher's exact test), Q value = 1

Table S13773.  Gene #1296: 'FAM155B MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
FAM155B MUTATED 2 3 1
FAM155B WILD-TYPE 180 130 71
'FAM155B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.258 (Fisher's exact test), Q value = 0.58

Table S13774.  Gene #1296: 'FAM155B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
FAM155B MUTATED 1 4 1 2
FAM155B WILD-TYPE 111 92 91 184
'FAM155B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.329 (Fisher's exact test), Q value = 0.66

Table S13775.  Gene #1296: 'FAM155B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
FAM155B MUTATED 0 2 2 1 1 1 1
FAM155B WILD-TYPE 60 48 47 39 62 124 98
'FAM155B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.49 (Fisher's exact test), Q value = 0.82

Table S13776.  Gene #1296: 'FAM155B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
FAM155B MUTATED 4 1 0 3
FAM155B WILD-TYPE 126 77 68 193
'FAM155B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.915 (Fisher's exact test), Q value = 1

Table S13777.  Gene #1296: 'FAM155B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
FAM155B MUTATED 0 1 0 1 3 1 1 0 1
FAM155B WILD-TYPE 40 61 28 79 66 47 42 28 73
'MCF2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.35 (Fisher's exact test), Q value = 0.68

Table S13778.  Gene #1297: 'MCF2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
MCF2 MUTATED 3 3 2 5
MCF2 WILD-TYPE 43 55 62 38
'MCF2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0313 (Fisher's exact test), Q value = 0.18

Table S13779.  Gene #1297: 'MCF2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
MCF2 MUTATED 6 6 1
MCF2 WILD-TYPE 45 77 76

Figure S3575.  Get High-res Image Gene #1297: 'MCF2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'MCF2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0114 (Fisher's exact test), Q value = 0.1

Table S13780.  Gene #1297: 'MCF2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
MCF2 MUTATED 20 5 6 1
MCF2 WILD-TYPE 158 178 95 19

Figure S3576.  Get High-res Image Gene #1297: 'MCF2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'MCF2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0935 (Fisher's exact test), Q value = 0.33

Table S13781.  Gene #1297: 'MCF2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
MCF2 MUTATED 6 2 11
MCF2 WILD-TYPE 81 78 89
'MCF2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.289 (Fisher's exact test), Q value = 0.62

Table S13782.  Gene #1297: 'MCF2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
MCF2 MUTATED 3 10 12
MCF2 WILD-TYPE 86 150 126
'MCF2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.963 (Fisher's exact test), Q value = 1

Table S13783.  Gene #1297: 'MCF2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
MCF2 MUTATED 12 8 5
MCF2 WILD-TYPE 170 125 67
'MCF2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0858 (Fisher's exact test), Q value = 0.32

Table S13784.  Gene #1297: 'MCF2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
MCF2 MUTATED 3 11 5 13
MCF2 WILD-TYPE 109 85 87 173
'MCF2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0307 (Fisher's exact test), Q value = 0.18

Table S13785.  Gene #1297: 'MCF2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
MCF2 MUTATED 1 5 8 2 2 5 9
MCF2 WILD-TYPE 59 45 41 38 61 120 90

Figure S3577.  Get High-res Image Gene #1297: 'MCF2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'MCF2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.828 (Fisher's exact test), Q value = 1

Table S13786.  Gene #1297: 'MCF2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
MCF2 MUTATED 10 4 3 14
MCF2 WILD-TYPE 120 74 65 182
'MCF2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.104 (Fisher's exact test), Q value = 0.36

Table S13787.  Gene #1297: 'MCF2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
MCF2 MUTATED 4 5 4 2 7 0 2 1 6
MCF2 WILD-TYPE 36 57 24 78 62 48 41 27 68
'MCF2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0861 (Fisher's exact test), Q value = 0.32

Table S13788.  Gene #1297: 'MCF2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
MCF2 MUTATED 0 1 0 2
MCF2 WILD-TYPE 33 30 27 17
'MCF2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S13789.  Gene #1297: 'MCF2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
MCF2 MUTATED 2 0 1 0
MCF2 WILD-TYPE 52 10 23 22
'PSD3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0563 (Fisher's exact test), Q value = 0.26

Table S13790.  Gene #1298: 'PSD3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
PSD3 MUTATED 8 2 0 0
PSD3 WILD-TYPE 170 181 101 20
'PSD3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0767 (Fisher's exact test), Q value = 0.3

Table S13791.  Gene #1298: 'PSD3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
PSD3 MUTATED 3 0 6
PSD3 WILD-TYPE 84 80 94
'PSD3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.602 (Fisher's exact test), Q value = 0.9

Table S13792.  Gene #1298: 'PSD3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
PSD3 MUTATED 1 4 5
PSD3 WILD-TYPE 88 156 133
'PSD3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.358 (Fisher's exact test), Q value = 0.69

Table S13793.  Gene #1298: 'PSD3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
PSD3 MUTATED 6 4 0
PSD3 WILD-TYPE 176 129 72
'PSD3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.21 (Fisher's exact test), Q value = 0.52

Table S13794.  Gene #1298: 'PSD3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
PSD3 MUTATED 1 5 2 3
PSD3 WILD-TYPE 111 91 90 183
'PSD3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0286 (Fisher's exact test), Q value = 0.17

Table S13795.  Gene #1298: 'PSD3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
PSD3 MUTATED 1 2 4 0 2 0 2
PSD3 WILD-TYPE 59 48 45 40 61 125 97

Figure S3578.  Get High-res Image Gene #1298: 'PSD3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'PSD3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.426 (Fisher's exact test), Q value = 0.75

Table S13796.  Gene #1298: 'PSD3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
PSD3 MUTATED 5 2 0 4
PSD3 WILD-TYPE 125 76 68 192
'PSD3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0982 (Fisher's exact test), Q value = 0.34

Table S13797.  Gene #1298: 'PSD3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
PSD3 MUTATED 1 1 0 1 6 0 0 1 1
PSD3 WILD-TYPE 39 61 28 79 63 48 43 27 73
'ARHGAP27 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00732 (Fisher's exact test), Q value = 0.079

Table S13798.  Gene #1299: 'ARHGAP27 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ARHGAP27 MUTATED 4 0 0 2
ARHGAP27 WILD-TYPE 42 58 64 41

Figure S3579.  Get High-res Image Gene #1299: 'ARHGAP27 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'ARHGAP27 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00186 (Fisher's exact test), Q value = 0.036

Table S13799.  Gene #1299: 'ARHGAP27 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ARHGAP27 MUTATED 5 0 1
ARHGAP27 WILD-TYPE 46 83 76

Figure S3580.  Get High-res Image Gene #1299: 'ARHGAP27 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'ARHGAP27 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00285 (Fisher's exact test), Q value = 0.048

Table S13800.  Gene #1299: 'ARHGAP27 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ARHGAP27 MUTATED 10 1 0 1
ARHGAP27 WILD-TYPE 168 182 101 19

Figure S3581.  Get High-res Image Gene #1299: 'ARHGAP27 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ARHGAP27 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S13801.  Gene #1299: 'ARHGAP27 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ARHGAP27 MUTATED 2 1 2
ARHGAP27 WILD-TYPE 85 79 98
'ARHGAP27 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.604 (Fisher's exact test), Q value = 0.91

Table S13802.  Gene #1299: 'ARHGAP27 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ARHGAP27 MUTATED 1 4 5
ARHGAP27 WILD-TYPE 88 156 133
'ARHGAP27 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S13803.  Gene #1299: 'ARHGAP27 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ARHGAP27 MUTATED 5 3 2
ARHGAP27 WILD-TYPE 177 130 70
'ARHGAP27 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.412 (Fisher's exact test), Q value = 0.74

Table S13804.  Gene #1299: 'ARHGAP27 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ARHGAP27 MUTATED 1 3 1 7
ARHGAP27 WILD-TYPE 111 93 91 179
'ARHGAP27 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00214 (Fisher's exact test), Q value = 0.039

Table S13805.  Gene #1299: 'ARHGAP27 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ARHGAP27 MUTATED 2 0 4 0 0 0 6
ARHGAP27 WILD-TYPE 58 50 45 40 63 125 93

Figure S3582.  Get High-res Image Gene #1299: 'ARHGAP27 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ARHGAP27 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.25 (Fisher's exact test), Q value = 0.58

Table S13806.  Gene #1299: 'ARHGAP27 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ARHGAP27 MUTATED 2 1 0 8
ARHGAP27 WILD-TYPE 128 77 68 188
'ARHGAP27 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00221 (Fisher's exact test), Q value = 0.04

Table S13807.  Gene #1299: 'ARHGAP27 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ARHGAP27 MUTATED 1 2 0 0 7 0 0 1 0
ARHGAP27 WILD-TYPE 39 60 28 80 62 48 43 27 74

Figure S3583.  Get High-res Image Gene #1299: 'ARHGAP27 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'C20ORF117 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0588 (Fisher's exact test), Q value = 0.26

Table S13808.  Gene #1300: 'C20ORF117 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
C20ORF117 MUTATED 3 2 0 0
C20ORF117 WILD-TYPE 43 56 64 43
'C20ORF117 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.213 (Fisher's exact test), Q value = 0.52

Table S13809.  Gene #1300: 'C20ORF117 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
C20ORF117 MUTATED 2 3 0
C20ORF117 WILD-TYPE 49 80 77
'C20ORF117 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00159 (Fisher's exact test), Q value = 0.033

Table S13810.  Gene #1300: 'C20ORF117 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
C20ORF117 MUTATED 14 1 2 0
C20ORF117 WILD-TYPE 164 182 99 20

Figure S3584.  Get High-res Image Gene #1300: 'C20ORF117 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'C20ORF117 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.177 (Fisher's exact test), Q value = 0.48

Table S13811.  Gene #1300: 'C20ORF117 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
C20ORF117 MUTATED 6 1 6
C20ORF117 WILD-TYPE 81 79 94
'C20ORF117 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.371 (Fisher's exact test), Q value = 0.7

Table S13812.  Gene #1300: 'C20ORF117 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
C20ORF117 MUTATED 5 4 7
C20ORF117 WILD-TYPE 84 156 131
'C20ORF117 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.22 (Fisher's exact test), Q value = 0.53

Table S13813.  Gene #1300: 'C20ORF117 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
C20ORF117 MUTATED 11 4 1
C20ORF117 WILD-TYPE 171 129 71
'C20ORF117 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0463 (Fisher's exact test), Q value = 0.23

Table S13814.  Gene #1300: 'C20ORF117 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
C20ORF117 MUTATED 2 4 8 4
C20ORF117 WILD-TYPE 110 92 84 182

Figure S3585.  Get High-res Image Gene #1300: 'C20ORF117 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'C20ORF117 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 4e-05 (Fisher's exact test), Q value = 0.0027

Table S13815.  Gene #1300: 'C20ORF117 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
C20ORF117 MUTATED 0 1 10 0 1 3 3
C20ORF117 WILD-TYPE 60 49 39 40 62 122 96

Figure S3586.  Get High-res Image Gene #1300: 'C20ORF117 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'C20ORF117 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.544 (Fisher's exact test), Q value = 0.86

Table S13816.  Gene #1300: 'C20ORF117 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
C20ORF117 MUTATED 7 3 1 6
C20ORF117 WILD-TYPE 123 75 67 190
'C20ORF117 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0332 (Fisher's exact test), Q value = 0.19

Table S13817.  Gene #1300: 'C20ORF117 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
C20ORF117 MUTATED 1 5 0 3 7 0 0 0 1
C20ORF117 WILD-TYPE 39 57 28 77 62 48 43 28 73

Figure S3587.  Get High-res Image Gene #1300: 'C20ORF117 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'C20ORF117 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00304 (Fisher's exact test), Q value = 0.049

Table S13818.  Gene #1300: 'C20ORF117 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
C20ORF117 MUTATED 1 1 0 5
C20ORF117 WILD-TYPE 32 30 27 14

Figure S3588.  Get High-res Image Gene #1300: 'C20ORF117 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'C20ORF117 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.543 (Fisher's exact test), Q value = 0.86

Table S13819.  Gene #1300: 'C20ORF117 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
C20ORF117 MUTATED 5 0 2 0
C20ORF117 WILD-TYPE 49 10 22 22
'NKTR MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.223 (Fisher's exact test), Q value = 0.54

Table S13820.  Gene #1301: 'NKTR MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
NKTR MUTATED 2 1 0 2
NKTR WILD-TYPE 44 57 64 41
'NKTR MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.255 (Fisher's exact test), Q value = 0.58

Table S13821.  Gene #1301: 'NKTR MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
NKTR MUTATED 3 1 1
NKTR WILD-TYPE 48 82 76
'NKTR MUTATION STATUS' versus 'CN_CNMF'

P value = 0.128 (Fisher's exact test), Q value = 0.4

Table S13822.  Gene #1301: 'NKTR MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
NKTR MUTATED 8 5 0 0
NKTR WILD-TYPE 170 178 101 20
'NKTR MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.581 (Fisher's exact test), Q value = 0.89

Table S13823.  Gene #1301: 'NKTR MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
NKTR MUTATED 2 2 5
NKTR WILD-TYPE 85 78 95
'NKTR MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.588 (Fisher's exact test), Q value = 0.89

Table S13824.  Gene #1301: 'NKTR MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
NKTR MUTATED 3 7 3
NKTR WILD-TYPE 86 153 135
'NKTR MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0965 (Fisher's exact test), Q value = 0.34

Table S13825.  Gene #1301: 'NKTR MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
NKTR MUTATED 3 8 2
NKTR WILD-TYPE 179 125 70
'NKTR MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.73 (Fisher's exact test), Q value = 1

Table S13826.  Gene #1301: 'NKTR MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
NKTR MUTATED 4 3 1 6
NKTR WILD-TYPE 108 93 91 180
'NKTR MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0484 (Fisher's exact test), Q value = 0.23

Table S13827.  Gene #1301: 'NKTR MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
NKTR MUTATED 3 2 4 0 0 1 4
NKTR WILD-TYPE 57 48 45 40 63 124 95

Figure S3589.  Get High-res Image Gene #1301: 'NKTR MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'NKTR MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.887 (Fisher's exact test), Q value = 1

Table S13828.  Gene #1301: 'NKTR MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
NKTR MUTATED 4 1 2 5
NKTR WILD-TYPE 126 77 66 191
'NKTR MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.129 (Fisher's exact test), Q value = 0.4

Table S13829.  Gene #1301: 'NKTR MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
NKTR MUTATED 1 1 0 1 6 0 2 0 1
NKTR WILD-TYPE 39 61 28 79 63 48 41 28 73
'NKTR MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.269 (Fisher's exact test), Q value = 0.59

Table S13830.  Gene #1301: 'NKTR MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
NKTR MUTATED 1 0 1 2
NKTR WILD-TYPE 32 31 26 17
'NKTR MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.487 (Fisher's exact test), Q value = 0.81

Table S13831.  Gene #1301: 'NKTR MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
NKTR MUTATED 1 0 2 1
NKTR WILD-TYPE 53 10 22 21
'KLF5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.717 (Fisher's exact test), Q value = 0.99

Table S13832.  Gene #1302: 'KLF5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
KLF5 MUTATED 6 5 1 0
KLF5 WILD-TYPE 172 178 100 20
'KLF5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.786 (Fisher's exact test), Q value = 1

Table S13833.  Gene #1302: 'KLF5 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
KLF5 MUTATED 3 4 3
KLF5 WILD-TYPE 84 76 97
'KLF5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.084 (Fisher's exact test), Q value = 0.31

Table S13834.  Gene #1302: 'KLF5 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
KLF5 MUTATED 0 5 7
KLF5 WILD-TYPE 89 155 131
'KLF5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.742 (Fisher's exact test), Q value = 1

Table S13835.  Gene #1302: 'KLF5 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
KLF5 MUTATED 6 5 1
KLF5 WILD-TYPE 176 128 71
'KLF5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.289 (Fisher's exact test), Q value = 0.62

Table S13836.  Gene #1302: 'KLF5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
KLF5 MUTATED 5 3 2 2
KLF5 WILD-TYPE 107 93 90 184
'KLF5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0164 (Fisher's exact test), Q value = 0.13

Table S13837.  Gene #1302: 'KLF5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
KLF5 MUTATED 3 3 3 1 0 0 2
KLF5 WILD-TYPE 57 47 46 39 63 125 97

Figure S3590.  Get High-res Image Gene #1302: 'KLF5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'KLF5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.303 (Fisher's exact test), Q value = 0.63

Table S13838.  Gene #1302: 'KLF5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
KLF5 MUTATED 4 3 2 2
KLF5 WILD-TYPE 126 75 66 194
'KLF5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.884 (Fisher's exact test), Q value = 1

Table S13839.  Gene #1302: 'KLF5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
KLF5 MUTATED 1 3 0 2 1 1 2 0 1
KLF5 WILD-TYPE 39 59 28 78 68 47 41 28 73
'PARG MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0459 (Fisher's exact test), Q value = 0.23

Table S13840.  Gene #1303: 'PARG MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
PARG MUTATED 9 1 2 0
PARG WILD-TYPE 169 182 99 20

Figure S3591.  Get High-res Image Gene #1303: 'PARG MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'PARG MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.617 (Fisher's exact test), Q value = 0.92

Table S13841.  Gene #1303: 'PARG MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
PARG MUTATED 5 2 5
PARG WILD-TYPE 82 78 95
'PARG MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.27 (Fisher's exact test), Q value = 0.6

Table S13842.  Gene #1303: 'PARG MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
PARG MUTATED 2 2 6
PARG WILD-TYPE 87 158 132
'PARG MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.761 (Fisher's exact test), Q value = 1

Table S13843.  Gene #1303: 'PARG MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
PARG MUTATED 6 3 1
PARG WILD-TYPE 176 130 71
'PARG MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0342 (Fisher's exact test), Q value = 0.19

Table S13844.  Gene #1303: 'PARG MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
PARG MUTATED 2 5 4 1
PARG WILD-TYPE 110 91 88 185

Figure S3592.  Get High-res Image Gene #1303: 'PARG MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'PARG MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00047 (Fisher's exact test), Q value = 0.015

Table S13845.  Gene #1303: 'PARG MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
PARG MUTATED 0 2 6 1 2 0 1
PARG WILD-TYPE 60 48 43 39 61 125 98

Figure S3593.  Get High-res Image Gene #1303: 'PARG MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'PARG MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.35 (Fisher's exact test), Q value = 0.68

Table S13846.  Gene #1303: 'PARG MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
PARG MUTATED 4 4 1 3
PARG WILD-TYPE 126 74 67 193
'PARG MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.396 (Fisher's exact test), Q value = 0.72

Table S13847.  Gene #1303: 'PARG MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
PARG MUTATED 2 4 0 1 3 0 1 0 1
PARG WILD-TYPE 38 58 28 79 66 48 42 28 73
'OR6A2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.05 (Fisher's exact test), Q value = 0.24

Table S13848.  Gene #1304: 'OR6A2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
OR6A2 MUTATED 4 0 4 0
OR6A2 WILD-TYPE 174 183 97 20

Figure S3594.  Get High-res Image Gene #1304: 'OR6A2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'OR6A2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.327 (Fisher's exact test), Q value = 0.66

Table S13849.  Gene #1304: 'OR6A2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
OR6A2 MUTATED 4 1 1
OR6A2 WILD-TYPE 83 79 99
'OR6A2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.029 (Fisher's exact test), Q value = 0.17

Table S13850.  Gene #1304: 'OR6A2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
OR6A2 MUTATED 1 0 5
OR6A2 WILD-TYPE 88 160 133

Figure S3595.  Get High-res Image Gene #1304: 'OR6A2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'OR6A2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.139 (Fisher's exact test), Q value = 0.42

Table S13851.  Gene #1304: 'OR6A2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
OR6A2 MUTATED 5 0 1
OR6A2 WILD-TYPE 177 133 71
'OR6A2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0262 (Fisher's exact test), Q value = 0.16

Table S13852.  Gene #1304: 'OR6A2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
OR6A2 MUTATED 1 0 5 2
OR6A2 WILD-TYPE 111 96 87 184

Figure S3596.  Get High-res Image Gene #1304: 'OR6A2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'OR6A2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.121 (Fisher's exact test), Q value = 0.39

Table S13853.  Gene #1304: 'OR6A2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
OR6A2 MUTATED 2 1 0 0 3 0 2
OR6A2 WILD-TYPE 58 49 49 40 60 125 97
'OR6A2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.338 (Fisher's exact test), Q value = 0.67

Table S13854.  Gene #1304: 'OR6A2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
OR6A2 MUTATED 3 2 1 1
OR6A2 WILD-TYPE 127 76 67 195
'OR6A2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.783 (Fisher's exact test), Q value = 1

Table S13855.  Gene #1304: 'OR6A2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
OR6A2 MUTATED 1 2 0 2 1 0 1 0 0
OR6A2 WILD-TYPE 39 60 28 78 68 48 42 28 74
'MAGI1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.151 (Fisher's exact test), Q value = 0.43

Table S13856.  Gene #1305: 'MAGI1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
MAGI1 MUTATED 3 1 1 4
MAGI1 WILD-TYPE 43 57 63 39
'MAGI1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.341 (Fisher's exact test), Q value = 0.67

Table S13857.  Gene #1305: 'MAGI1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
MAGI1 MUTATED 4 2 3
MAGI1 WILD-TYPE 47 81 74
'MAGI1 MUTATION STATUS' versus 'CN_CNMF'

P value = 6e-05 (Fisher's exact test), Q value = 0.0037

Table S13858.  Gene #1305: 'MAGI1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
MAGI1 MUTATED 21 4 1 0
MAGI1 WILD-TYPE 157 179 100 20

Figure S3597.  Get High-res Image Gene #1305: 'MAGI1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'MAGI1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.284 (Fisher's exact test), Q value = 0.61

Table S13859.  Gene #1305: 'MAGI1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
MAGI1 MUTATED 6 2 8
MAGI1 WILD-TYPE 81 78 92
'MAGI1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.575 (Fisher's exact test), Q value = 0.88

Table S13860.  Gene #1305: 'MAGI1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
MAGI1 MUTATED 5 12 6
MAGI1 WILD-TYPE 84 148 132
'MAGI1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.746 (Fisher's exact test), Q value = 1

Table S13861.  Gene #1305: 'MAGI1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
MAGI1 MUTATED 9 9 5
MAGI1 WILD-TYPE 173 124 67
'MAGI1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.099 (Fisher's exact test), Q value = 0.35

Table S13862.  Gene #1305: 'MAGI1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
MAGI1 MUTATED 2 9 4 11
MAGI1 WILD-TYPE 110 87 88 175
'MAGI1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00659 (Fisher's exact test), Q value = 0.074

Table S13863.  Gene #1305: 'MAGI1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
MAGI1 MUTATED 2 2 8 1 2 2 9
MAGI1 WILD-TYPE 58 48 41 39 61 123 90

Figure S3598.  Get High-res Image Gene #1305: 'MAGI1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'MAGI1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0713 (Fisher's exact test), Q value = 0.29

Table S13864.  Gene #1305: 'MAGI1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
MAGI1 MUTATED 7 3 0 15
MAGI1 WILD-TYPE 123 75 68 181
'MAGI1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00311 (Fisher's exact test), Q value = 0.05

Table S13865.  Gene #1305: 'MAGI1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
MAGI1 MUTATED 1 2 3 2 12 2 1 1 1
MAGI1 WILD-TYPE 39 60 25 78 57 46 42 27 73

Figure S3599.  Get High-res Image Gene #1305: 'MAGI1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'MAGI1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00256 (Fisher's exact test), Q value = 0.044

Table S13866.  Gene #1305: 'MAGI1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
MAGI1 MUTATED 0 1 0 4
MAGI1 WILD-TYPE 33 30 27 15

Figure S3600.  Get High-res Image Gene #1305: 'MAGI1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'MAGI1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.192 (Fisher's exact test), Q value = 0.49

Table S13867.  Gene #1305: 'MAGI1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
MAGI1 MUTATED 2 0 3 0
MAGI1 WILD-TYPE 52 10 21 22
'CALCOCO2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.756 (Fisher's exact test), Q value = 1

Table S13868.  Gene #1306: 'CALCOCO2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
CALCOCO2 MUTATED 4 2 2 0
CALCOCO2 WILD-TYPE 174 181 99 20
'CALCOCO2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.878 (Fisher's exact test), Q value = 1

Table S13869.  Gene #1306: 'CALCOCO2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
CALCOCO2 MUTATED 2 1 3
CALCOCO2 WILD-TYPE 85 79 97
'CALCOCO2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.704 (Fisher's exact test), Q value = 0.98

Table S13870.  Gene #1306: 'CALCOCO2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
CALCOCO2 MUTATED 2 2 3
CALCOCO2 WILD-TYPE 87 158 135
'CALCOCO2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S13871.  Gene #1306: 'CALCOCO2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
CALCOCO2 MUTATED 4 2 1
CALCOCO2 WILD-TYPE 178 131 71
'CALCOCO2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.652 (Fisher's exact test), Q value = 0.94

Table S13872.  Gene #1306: 'CALCOCO2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
CALCOCO2 MUTATED 1 1 3 3
CALCOCO2 WILD-TYPE 111 95 89 183
'CALCOCO2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.507 (Fisher's exact test), Q value = 0.83

Table S13873.  Gene #1306: 'CALCOCO2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
CALCOCO2 MUTATED 0 1 1 2 1 1 2
CALCOCO2 WILD-TYPE 60 49 48 38 62 124 97
'CALCOCO2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.844 (Fisher's exact test), Q value = 1

Table S13874.  Gene #1306: 'CALCOCO2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
CALCOCO2 MUTATED 3 1 0 4
CALCOCO2 WILD-TYPE 127 77 68 192
'CALCOCO2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.646 (Fisher's exact test), Q value = 0.93

Table S13875.  Gene #1306: 'CALCOCO2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
CALCOCO2 MUTATED 2 1 0 2 2 1 0 0 0
CALCOCO2 WILD-TYPE 38 61 28 78 67 47 43 28 74
'IKBKE MUTATION STATUS' versus 'CN_CNMF'

P value = 0.204 (Fisher's exact test), Q value = 0.51

Table S13876.  Gene #1307: 'IKBKE MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
IKBKE MUTATED 6 1 1 0
IKBKE WILD-TYPE 172 182 100 20
'IKBKE MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.133 (Fisher's exact test), Q value = 0.41

Table S13877.  Gene #1307: 'IKBKE MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
IKBKE MUTATED 0 1 4
IKBKE WILD-TYPE 87 79 96
'IKBKE MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.345 (Fisher's exact test), Q value = 0.67

Table S13878.  Gene #1307: 'IKBKE MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
IKBKE MUTATED 1 5 1
IKBKE WILD-TYPE 88 155 137
'IKBKE MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.424 (Fisher's exact test), Q value = 0.75

Table S13879.  Gene #1307: 'IKBKE MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
IKBKE MUTATED 2 4 1
IKBKE WILD-TYPE 180 129 71
'IKBKE MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.429 (Fisher's exact test), Q value = 0.76

Table S13880.  Gene #1307: 'IKBKE MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
IKBKE MUTATED 2 3 0 3
IKBKE WILD-TYPE 110 93 92 183
'IKBKE MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.192 (Fisher's exact test), Q value = 0.49

Table S13881.  Gene #1307: 'IKBKE MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
IKBKE MUTATED 2 0 3 0 1 1 1
IKBKE WILD-TYPE 58 50 46 40 62 124 98
'IKBKE MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S13882.  Gene #1307: 'IKBKE MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
IKBKE MUTATED 2 1 1 4
IKBKE WILD-TYPE 128 77 67 192
'IKBKE MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.329 (Fisher's exact test), Q value = 0.66

Table S13883.  Gene #1307: 'IKBKE MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
IKBKE MUTATED 1 1 0 1 4 0 1 0 0
IKBKE WILD-TYPE 39 61 28 79 65 48 42 28 74
'IKBKE MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.626 (Fisher's exact test), Q value = 0.92

Table S13884.  Gene #1307: 'IKBKE MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
IKBKE MUTATED 0 1 1 1
IKBKE WILD-TYPE 33 30 26 18
'IKBKE MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0857 (Fisher's exact test), Q value = 0.32

Table S13885.  Gene #1307: 'IKBKE MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
IKBKE MUTATED 0 1 1 1
IKBKE WILD-TYPE 54 9 23 21
'SLC44A4 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.121 (Fisher's exact test), Q value = 0.39

Table S13886.  Gene #1308: 'SLC44A4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
SLC44A4 MUTATED 2 0 0 1
SLC44A4 WILD-TYPE 44 58 64 42
'SLC44A4 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.461 (Fisher's exact test), Q value = 0.79

Table S13887.  Gene #1308: 'SLC44A4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
SLC44A4 MUTATED 1 2 0
SLC44A4 WILD-TYPE 50 81 77
'SLC44A4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00026 (Fisher's exact test), Q value = 0.0099

Table S13888.  Gene #1308: 'SLC44A4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
SLC44A4 MUTATED 11 0 0 1
SLC44A4 WILD-TYPE 167 183 101 19

Figure S3601.  Get High-res Image Gene #1308: 'SLC44A4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'SLC44A4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0766 (Fisher's exact test), Q value = 0.3

Table S13889.  Gene #1308: 'SLC44A4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
SLC44A4 MUTATED 3 0 6
SLC44A4 WILD-TYPE 84 80 94
'SLC44A4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.182 (Fisher's exact test), Q value = 0.48

Table S13890.  Gene #1308: 'SLC44A4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
SLC44A4 MUTATED 0 6 5
SLC44A4 WILD-TYPE 89 154 133
'SLC44A4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.85 (Fisher's exact test), Q value = 1

Table S13891.  Gene #1308: 'SLC44A4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
SLC44A4 MUTATED 6 4 1
SLC44A4 WILD-TYPE 176 129 71
'SLC44A4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0294 (Fisher's exact test), Q value = 0.18

Table S13892.  Gene #1308: 'SLC44A4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
SLC44A4 MUTATED 0 5 4 3
SLC44A4 WILD-TYPE 112 91 88 183

Figure S3602.  Get High-res Image Gene #1308: 'SLC44A4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'SLC44A4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 6e-05 (Fisher's exact test), Q value = 0.0037

Table S13893.  Gene #1308: 'SLC44A4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
SLC44A4 MUTATED 0 0 8 0 1 1 2
SLC44A4 WILD-TYPE 60 50 41 40 62 124 97

Figure S3603.  Get High-res Image Gene #1308: 'SLC44A4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'SLC44A4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0906 (Fisher's exact test), Q value = 0.33

Table S13894.  Gene #1308: 'SLC44A4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
SLC44A4 MUTATED 7 2 0 3
SLC44A4 WILD-TYPE 123 76 68 193
'SLC44A4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0437 (Fisher's exact test), Q value = 0.22

Table S13895.  Gene #1308: 'SLC44A4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
SLC44A4 MUTATED 1 4 1 1 5 0 0 0 0
SLC44A4 WILD-TYPE 39 58 27 79 64 48 43 28 74

Figure S3604.  Get High-res Image Gene #1308: 'SLC44A4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'SLC44A4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0253 (Fisher's exact test), Q value = 0.16

Table S13896.  Gene #1308: 'SLC44A4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
SLC44A4 MUTATED 1 0 0 3
SLC44A4 WILD-TYPE 32 31 27 16

Figure S3605.  Get High-res Image Gene #1308: 'SLC44A4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'SLC44A4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.671 (Fisher's exact test), Q value = 0.95

Table S13897.  Gene #1308: 'SLC44A4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
SLC44A4 MUTATED 2 0 2 0
SLC44A4 WILD-TYPE 52 10 22 22
'GANAB MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.28 (Fisher's exact test), Q value = 0.61

Table S13898.  Gene #1309: 'GANAB MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
GANAB MUTATED 2 0 2 0
GANAB WILD-TYPE 44 58 62 43
'GANAB MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.231 (Fisher's exact test), Q value = 0.55

Table S13899.  Gene #1309: 'GANAB MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
GANAB MUTATED 2 2 0
GANAB WILD-TYPE 49 81 77
'GANAB MUTATION STATUS' versus 'CN_CNMF'

P value = 0.764 (Fisher's exact test), Q value = 1

Table S13900.  Gene #1309: 'GANAB MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
GANAB MUTATED 7 4 3 0
GANAB WILD-TYPE 171 179 98 20
'GANAB MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0603 (Fisher's exact test), Q value = 0.27

Table S13901.  Gene #1309: 'GANAB MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
GANAB MUTATED 7 1 2
GANAB WILD-TYPE 80 79 98
'GANAB MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.197 (Fisher's exact test), Q value = 0.5

Table S13902.  Gene #1309: 'GANAB MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
GANAB MUTATED 1 3 7
GANAB WILD-TYPE 88 157 131
'GANAB MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.558 (Fisher's exact test), Q value = 0.87

Table S13903.  Gene #1309: 'GANAB MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
GANAB MUTATED 7 3 1
GANAB WILD-TYPE 175 130 71
'GANAB MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0463 (Fisher's exact test), Q value = 0.23

Table S13904.  Gene #1309: 'GANAB MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
GANAB MUTATED 1 2 7 4
GANAB WILD-TYPE 111 94 85 182

Figure S3606.  Get High-res Image Gene #1309: 'GANAB MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'GANAB MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.424 (Fisher's exact test), Q value = 0.75

Table S13905.  Gene #1309: 'GANAB MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
GANAB MUTATED 1 1 3 1 4 2 2
GANAB WILD-TYPE 59 49 46 39 59 123 97
'GANAB MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.259 (Fisher's exact test), Q value = 0.58

Table S13906.  Gene #1309: 'GANAB MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
GANAB MUTATED 2 5 2 5
GANAB WILD-TYPE 128 73 66 191
'GANAB MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.422 (Fisher's exact test), Q value = 0.75

Table S13907.  Gene #1309: 'GANAB MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
GANAB MUTATED 1 5 0 1 2 0 1 1 3
GANAB WILD-TYPE 39 57 28 79 67 48 42 27 71
'GANAB MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.546 (Fisher's exact test), Q value = 0.86

Table S13908.  Gene #1309: 'GANAB MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
GANAB MUTATED 2 2 0 0
GANAB WILD-TYPE 31 29 27 19
'GANAB MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.218 (Fisher's exact test), Q value = 0.53

Table S13909.  Gene #1309: 'GANAB MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
GANAB MUTATED 3 1 0 0
GANAB WILD-TYPE 51 9 24 22
'SAMD9L MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0735 (Fisher's exact test), Q value = 0.29

Table S13910.  Gene #1310: 'SAMD9L MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
SAMD9L MUTATED 6 3 1 4
SAMD9L WILD-TYPE 40 55 63 39
'SAMD9L MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.259 (Fisher's exact test), Q value = 0.58

Table S13911.  Gene #1310: 'SAMD9L MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
SAMD9L MUTATED 6 4 4
SAMD9L WILD-TYPE 45 79 73
'SAMD9L MUTATION STATUS' versus 'CN_CNMF'

P value = 0.008 (Fisher's exact test), Q value = 0.084

Table S13912.  Gene #1310: 'SAMD9L MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
SAMD9L MUTATED 19 4 6 1
SAMD9L WILD-TYPE 159 179 95 19

Figure S3607.  Get High-res Image Gene #1310: 'SAMD9L MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'SAMD9L MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.704 (Fisher's exact test), Q value = 0.98

Table S13913.  Gene #1310: 'SAMD9L MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
SAMD9L MUTATED 4 6 7
SAMD9L WILD-TYPE 83 74 93
'SAMD9L MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.436 (Fisher's exact test), Q value = 0.76

Table S13914.  Gene #1310: 'SAMD9L MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
SAMD9L MUTATED 3 12 7
SAMD9L WILD-TYPE 86 148 131
'SAMD9L MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0586 (Fisher's exact test), Q value = 0.26

Table S13915.  Gene #1310: 'SAMD9L MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
SAMD9L MUTATED 6 8 8
SAMD9L WILD-TYPE 176 125 64
'SAMD9L MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.659 (Fisher's exact test), Q value = 0.95

Table S13916.  Gene #1310: 'SAMD9L MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
SAMD9L MUTATED 5 5 5 15
SAMD9L WILD-TYPE 107 91 87 171
'SAMD9L MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.203 (Fisher's exact test), Q value = 0.51

Table S13917.  Gene #1310: 'SAMD9L MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
SAMD9L MUTATED 3 3 6 1 3 4 10
SAMD9L WILD-TYPE 57 47 43 39 60 121 89
'SAMD9L MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.724 (Fisher's exact test), Q value = 0.99

Table S13918.  Gene #1310: 'SAMD9L MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
SAMD9L MUTATED 7 3 4 15
SAMD9L WILD-TYPE 123 75 64 181
'SAMD9L MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.476 (Fisher's exact test), Q value = 0.8

Table S13919.  Gene #1310: 'SAMD9L MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
SAMD9L MUTATED 1 2 4 5 7 2 3 2 3
SAMD9L WILD-TYPE 39 60 24 75 62 46 40 26 71
'SAMD9L MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.598 (Fisher's exact test), Q value = 0.9

Table S13920.  Gene #1310: 'SAMD9L MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
SAMD9L MUTATED 3 1 1 2
SAMD9L WILD-TYPE 30 30 26 17
'SAMD9L MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00628 (Fisher's exact test), Q value = 0.073

Table S13921.  Gene #1310: 'SAMD9L MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
SAMD9L MUTATED 0 0 4 3
SAMD9L WILD-TYPE 54 10 20 19

Figure S3608.  Get High-res Image Gene #1310: 'SAMD9L MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

'CLPTM1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0011 (Fisher's exact test), Q value = 0.026

Table S13922.  Gene #1311: 'CLPTM1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
CLPTM1 MUTATED 11 0 1 0
CLPTM1 WILD-TYPE 167 183 100 20

Figure S3609.  Get High-res Image Gene #1311: 'CLPTM1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'CLPTM1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0355 (Fisher's exact test), Q value = 0.2

Table S13923.  Gene #1311: 'CLPTM1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
CLPTM1 MUTATED 3 0 7
CLPTM1 WILD-TYPE 84 80 93

Figure S3610.  Get High-res Image Gene #1311: 'CLPTM1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'CLPTM1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.289 (Fisher's exact test), Q value = 0.62

Table S13924.  Gene #1311: 'CLPTM1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
CLPTM1 MUTATED 2 3 7
CLPTM1 WILD-TYPE 87 157 131
'CLPTM1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.745 (Fisher's exact test), Q value = 1

Table S13925.  Gene #1311: 'CLPTM1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
CLPTM1 MUTATED 6 5 1
CLPTM1 WILD-TYPE 176 128 71
'CLPTM1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.035 (Fisher's exact test), Q value = 0.19

Table S13926.  Gene #1311: 'CLPTM1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
CLPTM1 MUTATED 1 6 3 2
CLPTM1 WILD-TYPE 111 90 89 184

Figure S3611.  Get High-res Image Gene #1311: 'CLPTM1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'CLPTM1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 6e-04 (Fisher's exact test), Q value = 0.018

Table S13927.  Gene #1311: 'CLPTM1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
CLPTM1 MUTATED 0 3 6 0 0 1 2
CLPTM1 WILD-TYPE 60 47 43 40 63 124 97

Figure S3612.  Get High-res Image Gene #1311: 'CLPTM1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CLPTM1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.518 (Fisher's exact test), Q value = 0.84

Table S13928.  Gene #1311: 'CLPTM1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
CLPTM1 MUTATED 3 3 0 6
CLPTM1 WILD-TYPE 127 75 68 190
'CLPTM1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.688 (Fisher's exact test), Q value = 0.97

Table S13929.  Gene #1311: 'CLPTM1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
CLPTM1 MUTATED 1 3 0 2 4 1 0 0 1
CLPTM1 WILD-TYPE 39 59 28 78 65 47 43 28 73
'CLPTM1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.256 (Fisher's exact test), Q value = 0.58

Table S13930.  Gene #1311: 'CLPTM1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
CLPTM1 MUTATED 2 0 0 1
CLPTM1 WILD-TYPE 31 31 27 18
'CLPTM1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.694 (Fisher's exact test), Q value = 0.97

Table S13931.  Gene #1311: 'CLPTM1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
CLPTM1 MUTATED 1 0 1 1
CLPTM1 WILD-TYPE 53 10 23 21
'SCARA5 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.29 (Fisher's exact test), Q value = 0.62

Table S13932.  Gene #1312: 'SCARA5 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
SCARA5 MUTATED 2 2 0 2
SCARA5 WILD-TYPE 44 56 64 41
'SCARA5 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.162 (Fisher's exact test), Q value = 0.45

Table S13933.  Gene #1312: 'SCARA5 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
SCARA5 MUTATED 2 4 0
SCARA5 WILD-TYPE 49 79 77
'SCARA5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.177 (Fisher's exact test), Q value = 0.48

Table S13934.  Gene #1312: 'SCARA5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
SCARA5 MUTATED 10 3 2 0
SCARA5 WILD-TYPE 168 180 99 20
'SCARA5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0774 (Fisher's exact test), Q value = 0.3

Table S13935.  Gene #1312: 'SCARA5 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
SCARA5 MUTATED 3 0 6
SCARA5 WILD-TYPE 84 80 94
'SCARA5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.678 (Fisher's exact test), Q value = 0.96

Table S13936.  Gene #1312: 'SCARA5 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
SCARA5 MUTATED 3 3 5
SCARA5 WILD-TYPE 86 157 133
'SCARA5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.92 (Fisher's exact test), Q value = 1

Table S13937.  Gene #1312: 'SCARA5 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
SCARA5 MUTATED 6 3 2
SCARA5 WILD-TYPE 176 130 70
'SCARA5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.246 (Fisher's exact test), Q value = 0.57

Table S13938.  Gene #1312: 'SCARA5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
SCARA5 MUTATED 1 5 4 5
SCARA5 WILD-TYPE 111 91 88 181
'SCARA5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.002 (Fisher's exact test), Q value = 0.038

Table S13939.  Gene #1312: 'SCARA5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
SCARA5 MUTATED 0 2 7 0 0 3 3
SCARA5 WILD-TYPE 60 48 42 40 63 122 96

Figure S3613.  Get High-res Image Gene #1312: 'SCARA5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'SCARA5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.771 (Fisher's exact test), Q value = 1

Table S13940.  Gene #1312: 'SCARA5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
SCARA5 MUTATED 5 2 3 5
SCARA5 WILD-TYPE 125 76 65 191
'SCARA5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00727 (Fisher's exact test), Q value = 0.079

Table S13941.  Gene #1312: 'SCARA5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
SCARA5 MUTATED 0 1 1 0 8 0 1 1 3
SCARA5 WILD-TYPE 40 61 27 80 61 48 42 27 71

Figure S3614.  Get High-res Image Gene #1312: 'SCARA5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'SCARA5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00062 (Fisher's exact test), Q value = 0.018

Table S13942.  Gene #1312: 'SCARA5 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
SCARA5 MUTATED 0 0 0 4
SCARA5 WILD-TYPE 33 31 27 15

Figure S3615.  Get High-res Image Gene #1312: 'SCARA5 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'SCARA5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.673 (Fisher's exact test), Q value = 0.95

Table S13943.  Gene #1312: 'SCARA5 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
SCARA5 MUTATED 2 0 2 0
SCARA5 WILD-TYPE 52 10 22 22
'RAPGEF6 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0408 (Fisher's exact test), Q value = 0.21

Table S13944.  Gene #1313: 'RAPGEF6 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
RAPGEF6 MUTATED 2 0 1 4
RAPGEF6 WILD-TYPE 44 58 63 39

Figure S3616.  Get High-res Image Gene #1313: 'RAPGEF6 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'RAPGEF6 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.388 (Fisher's exact test), Q value = 0.71

Table S13945.  Gene #1313: 'RAPGEF6 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
RAPGEF6 MUTATED 2 1 4
RAPGEF6 WILD-TYPE 49 82 73
'RAPGEF6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0158 (Fisher's exact test), Q value = 0.13

Table S13946.  Gene #1313: 'RAPGEF6 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
RAPGEF6 MUTATED 13 2 5 0
RAPGEF6 WILD-TYPE 165 181 96 20

Figure S3617.  Get High-res Image Gene #1313: 'RAPGEF6 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'RAPGEF6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.282 (Fisher's exact test), Q value = 0.61

Table S13947.  Gene #1313: 'RAPGEF6 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
RAPGEF6 MUTATED 7 3 3
RAPGEF6 WILD-TYPE 80 77 97
'RAPGEF6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S13948.  Gene #1313: 'RAPGEF6 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
RAPGEF6 MUTATED 3 6 6
RAPGEF6 WILD-TYPE 86 154 132
'RAPGEF6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.941 (Fisher's exact test), Q value = 1

Table S13949.  Gene #1313: 'RAPGEF6 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
RAPGEF6 MUTATED 8 5 2
RAPGEF6 WILD-TYPE 174 128 70
'RAPGEF6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.153 (Fisher's exact test), Q value = 0.44

Table S13950.  Gene #1313: 'RAPGEF6 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
RAPGEF6 MUTATED 3 3 8 6
RAPGEF6 WILD-TYPE 109 93 84 180
'RAPGEF6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0338 (Fisher's exact test), Q value = 0.19

Table S13951.  Gene #1313: 'RAPGEF6 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
RAPGEF6 MUTATED 2 1 7 2 3 2 3
RAPGEF6 WILD-TYPE 58 49 42 38 60 123 96

Figure S3618.  Get High-res Image Gene #1313: 'RAPGEF6 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'RAPGEF6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.357 (Fisher's exact test), Q value = 0.69

Table S13952.  Gene #1313: 'RAPGEF6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
RAPGEF6 MUTATED 7 5 3 5
RAPGEF6 WILD-TYPE 123 73 65 191
'RAPGEF6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.037 (Fisher's exact test), Q value = 0.2

Table S13953.  Gene #1313: 'RAPGEF6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
RAPGEF6 MUTATED 0 6 2 1 7 1 1 0 2
RAPGEF6 WILD-TYPE 40 56 26 79 62 47 42 28 72

Figure S3619.  Get High-res Image Gene #1313: 'RAPGEF6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'RAPGEF6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.358 (Fisher's exact test), Q value = 0.69

Table S13954.  Gene #1313: 'RAPGEF6 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
RAPGEF6 MUTATED 1 1 0 2
RAPGEF6 WILD-TYPE 32 30 27 17
'RAPGEF6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.603 (Fisher's exact test), Q value = 0.91

Table S13955.  Gene #1313: 'RAPGEF6 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
RAPGEF6 MUTATED 2 1 1 0
RAPGEF6 WILD-TYPE 52 9 23 22
'CEP164 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00108 (Fisher's exact test), Q value = 0.026

Table S13956.  Gene #1314: 'CEP164 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
CEP164 MUTATED 3 0 0 5
CEP164 WILD-TYPE 43 58 64 38

Figure S3620.  Get High-res Image Gene #1314: 'CEP164 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'CEP164 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00381 (Fisher's exact test), Q value = 0.056

Table S13957.  Gene #1314: 'CEP164 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
CEP164 MUTATED 6 1 1
CEP164 WILD-TYPE 45 82 76

Figure S3621.  Get High-res Image Gene #1314: 'CEP164 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'CEP164 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00125 (Fisher's exact test), Q value = 0.029

Table S13958.  Gene #1314: 'CEP164 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
CEP164 MUTATED 19 4 2 0
CEP164 WILD-TYPE 159 179 99 20

Figure S3622.  Get High-res Image Gene #1314: 'CEP164 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'CEP164 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00586 (Fisher's exact test), Q value = 0.069

Table S13959.  Gene #1314: 'CEP164 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
CEP164 MUTATED 6 0 10
CEP164 WILD-TYPE 81 80 90

Figure S3623.  Get High-res Image Gene #1314: 'CEP164 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'CEP164 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.163 (Fisher's exact test), Q value = 0.46

Table S13960.  Gene #1314: 'CEP164 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
CEP164 MUTATED 1 10 7
CEP164 WILD-TYPE 88 150 131
'CEP164 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.159 (Fisher's exact test), Q value = 0.45

Table S13961.  Gene #1314: 'CEP164 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
CEP164 MUTATED 6 10 2
CEP164 WILD-TYPE 176 123 70
'CEP164 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0301 (Fisher's exact test), Q value = 0.18

Table S13962.  Gene #1314: 'CEP164 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
CEP164 MUTATED 1 9 6 9
CEP164 WILD-TYPE 111 87 86 177

Figure S3624.  Get High-res Image Gene #1314: 'CEP164 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'CEP164 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00044 (Fisher's exact test), Q value = 0.014

Table S13963.  Gene #1314: 'CEP164 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
CEP164 MUTATED 2 3 8 2 2 0 8
CEP164 WILD-TYPE 58 47 41 38 61 125 91

Figure S3625.  Get High-res Image Gene #1314: 'CEP164 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CEP164 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.473 (Fisher's exact test), Q value = 0.8

Table S13964.  Gene #1314: 'CEP164 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
CEP164 MUTATED 8 5 1 11
CEP164 WILD-TYPE 122 73 67 185
'CEP164 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00037 (Fisher's exact test), Q value = 0.013

Table S13965.  Gene #1314: 'CEP164 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
CEP164 MUTATED 5 5 2 2 9 0 0 2 0
CEP164 WILD-TYPE 35 57 26 78 60 48 43 26 74

Figure S3626.  Get High-res Image Gene #1314: 'CEP164 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'CEP164 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.665 (Fisher's exact test), Q value = 0.95

Table S13966.  Gene #1314: 'CEP164 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
CEP164 MUTATED 1 1 1 2
CEP164 WILD-TYPE 32 30 26 17
'CEP164 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.19 (Fisher's exact test), Q value = 0.49

Table S13967.  Gene #1314: 'CEP164 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
CEP164 MUTATED 2 0 3 0
CEP164 WILD-TYPE 52 10 21 22
'PAK4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.103 (Fisher's exact test), Q value = 0.36

Table S13968.  Gene #1315: 'PAK4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
PAK4 MUTATED 4 1 0 1
PAK4 WILD-TYPE 174 182 101 19
'PAK4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.289 (Fisher's exact test), Q value = 0.62

Table S13969.  Gene #1315: 'PAK4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
PAK4 MUTATED 3 0 3
PAK4 WILD-TYPE 84 80 97
'PAK4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.329 (Fisher's exact test), Q value = 0.66

Table S13970.  Gene #1315: 'PAK4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
PAK4 MUTATED 1 1 4
PAK4 WILD-TYPE 88 159 134
'PAK4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.664 (Fisher's exact test), Q value = 0.95

Table S13971.  Gene #1315: 'PAK4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
PAK4 MUTATED 4 2 0
PAK4 WILD-TYPE 178 131 72
'PAK4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00538 (Fisher's exact test), Q value = 0.066

Table S13972.  Gene #1315: 'PAK4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
PAK4 MUTATED 0 4 2 0
PAK4 WILD-TYPE 112 92 90 186

Figure S3627.  Get High-res Image Gene #1315: 'PAK4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'PAK4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S13973.  Gene #1315: 'PAK4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
PAK4 MUTATED 0 1 5 0 0 0 0
PAK4 WILD-TYPE 60 49 44 40 63 125 99

Figure S3628.  Get High-res Image Gene #1315: 'PAK4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'PAK4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0018 (Fisher's exact test), Q value = 0.035

Table S13974.  Gene #1315: 'PAK4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
PAK4 MUTATED 6 0 0 0
PAK4 WILD-TYPE 124 78 68 196

Figure S3629.  Get High-res Image Gene #1315: 'PAK4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'PAK4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0607 (Fisher's exact test), Q value = 0.27

Table S13975.  Gene #1315: 'PAK4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
PAK4 MUTATED 1 0 0 0 3 0 2 0 0
PAK4 WILD-TYPE 39 62 28 80 66 48 41 28 74
'DIMT1L MUTATION STATUS' versus 'CN_CNMF'

P value = 0.443 (Fisher's exact test), Q value = 0.77

Table S13976.  Gene #1316: 'DIMT1L MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
DIMT1L MUTATED 4 2 0 0
DIMT1L WILD-TYPE 174 181 101 20
'DIMT1L MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.289 (Fisher's exact test), Q value = 0.62

Table S13977.  Gene #1316: 'DIMT1L MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
DIMT1L MUTATED 3 0 3
DIMT1L WILD-TYPE 84 80 97
'DIMT1L MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.873 (Fisher's exact test), Q value = 1

Table S13978.  Gene #1316: 'DIMT1L MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
DIMT1L MUTATED 1 2 3
DIMT1L WILD-TYPE 88 158 135
'DIMT1L MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S13979.  Gene #1316: 'DIMT1L MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
DIMT1L MUTATED 3 2 1
DIMT1L WILD-TYPE 179 131 71
'DIMT1L MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0487 (Fisher's exact test), Q value = 0.24

Table S13980.  Gene #1316: 'DIMT1L MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
DIMT1L MUTATED 1 3 2 0
DIMT1L WILD-TYPE 111 93 90 186

Figure S3630.  Get High-res Image Gene #1316: 'DIMT1L MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'DIMT1L MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.021 (Fisher's exact test), Q value = 0.15

Table S13981.  Gene #1316: 'DIMT1L MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
DIMT1L MUTATED 1 1 3 0 1 0 0
DIMT1L WILD-TYPE 59 49 46 40 62 125 99

Figure S3631.  Get High-res Image Gene #1316: 'DIMT1L MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'DIMT1L MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.247 (Fisher's exact test), Q value = 0.57

Table S13982.  Gene #1316: 'DIMT1L MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
DIMT1L MUTATED 3 2 0 1
DIMT1L WILD-TYPE 127 76 68 195
'DIMT1L MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.275 (Fisher's exact test), Q value = 0.6

Table S13983.  Gene #1316: 'DIMT1L MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
DIMT1L MUTATED 0 2 0 0 1 1 2 0 0
DIMT1L WILD-TYPE 40 60 28 80 68 47 41 28 74
'TAF2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00013 (Fisher's exact test), Q value = 0.0063

Table S13984.  Gene #1317: 'TAF2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
TAF2 MUTATED 1 0 0 6
TAF2 WILD-TYPE 45 58 64 37

Figure S3632.  Get High-res Image Gene #1317: 'TAF2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'TAF2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.303 (Fisher's exact test), Q value = 0.63

Table S13985.  Gene #1317: 'TAF2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
TAF2 MUTATED 3 1 3
TAF2 WILD-TYPE 48 82 74
'TAF2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00131 (Fisher's exact test), Q value = 0.029

Table S13986.  Gene #1317: 'TAF2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
TAF2 MUTATED 13 3 1 3
TAF2 WILD-TYPE 165 180 100 17

Figure S3633.  Get High-res Image Gene #1317: 'TAF2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'TAF2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0784 (Fisher's exact test), Q value = 0.3

Table S13987.  Gene #1317: 'TAF2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
TAF2 MUTATED 8 3 2
TAF2 WILD-TYPE 79 77 98
'TAF2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.263 (Fisher's exact test), Q value = 0.59

Table S13988.  Gene #1317: 'TAF2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
TAF2 MUTATED 1 8 7
TAF2 WILD-TYPE 88 152 131
'TAF2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.288 (Fisher's exact test), Q value = 0.62

Table S13989.  Gene #1317: 'TAF2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
TAF2 MUTATED 7 8 1
TAF2 WILD-TYPE 175 125 71
'TAF2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.793 (Fisher's exact test), Q value = 1

Table S13990.  Gene #1317: 'TAF2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
TAF2 MUTATED 3 4 5 8
TAF2 WILD-TYPE 109 92 87 178
'TAF2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.109 (Fisher's exact test), Q value = 0.36

Table S13991.  Gene #1317: 'TAF2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
TAF2 MUTATED 3 3 4 2 1 1 6
TAF2 WILD-TYPE 57 47 45 38 62 124 93
'TAF2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.593 (Fisher's exact test), Q value = 0.9

Table S13992.  Gene #1317: 'TAF2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
TAF2 MUTATED 5 3 1 11
TAF2 WILD-TYPE 125 75 67 185
'TAF2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.779 (Fisher's exact test), Q value = 1

Table S13993.  Gene #1317: 'TAF2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
TAF2 MUTATED 2 3 3 2 4 2 1 1 2
TAF2 WILD-TYPE 38 59 25 78 65 46 42 27 72
'TAF2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0252 (Fisher's exact test), Q value = 0.16

Table S13994.  Gene #1317: 'TAF2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
TAF2 MUTATED 3 0 0 3
TAF2 WILD-TYPE 30 31 27 16

Figure S3634.  Get High-res Image Gene #1317: 'TAF2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'TAF2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S13995.  Gene #1317: 'TAF2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
TAF2 MUTATED 4 0 1 1
TAF2 WILD-TYPE 50 10 23 21
'NR3C1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00866 (Fisher's exact test), Q value = 0.087

Table S13996.  Gene #1318: 'NR3C1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
NR3C1 MUTATED 0 0 0 3
NR3C1 WILD-TYPE 46 58 64 40

Figure S3635.  Get High-res Image Gene #1318: 'NR3C1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'NR3C1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S13997.  Gene #1318: 'NR3C1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
NR3C1 MUTATED 1 1 1
NR3C1 WILD-TYPE 50 82 76
'NR3C1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.288 (Fisher's exact test), Q value = 0.62

Table S13998.  Gene #1318: 'NR3C1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
NR3C1 MUTATED 6 4 0 0
NR3C1 WILD-TYPE 172 179 101 20
'NR3C1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0491 (Fisher's exact test), Q value = 0.24

Table S13999.  Gene #1318: 'NR3C1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
NR3C1 MUTATED 3 4 0
NR3C1 WILD-TYPE 84 76 100

Figure S3636.  Get High-res Image Gene #1318: 'NR3C1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'NR3C1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.277 (Fisher's exact test), Q value = 0.6

Table S14000.  Gene #1318: 'NR3C1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
NR3C1 MUTATED 0 5 3
NR3C1 WILD-TYPE 89 155 135
'NR3C1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.638 (Fisher's exact test), Q value = 0.93

Table S14001.  Gene #1318: 'NR3C1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
NR3C1 MUTATED 3 4 1
NR3C1 WILD-TYPE 179 129 71
'NR3C1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.655 (Fisher's exact test), Q value = 0.94

Table S14002.  Gene #1318: 'NR3C1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
NR3C1 MUTATED 3 1 3 3
NR3C1 WILD-TYPE 109 95 89 183
'NR3C1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.162 (Fisher's exact test), Q value = 0.45

Table S14003.  Gene #1318: 'NR3C1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
NR3C1 MUTATED 3 1 2 1 1 0 2
NR3C1 WILD-TYPE 57 49 47 39 62 125 97
'NR3C1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.393 (Fisher's exact test), Q value = 0.72

Table S14004.  Gene #1318: 'NR3C1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
NR3C1 MUTATED 3 3 1 2
NR3C1 WILD-TYPE 127 75 67 194
'NR3C1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.376 (Fisher's exact test), Q value = 0.71

Table S14005.  Gene #1318: 'NR3C1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
NR3C1 MUTATED 0 3 1 2 1 2 0 0 0
NR3C1 WILD-TYPE 40 59 27 78 68 46 43 28 74
'NR3C1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.389 (Fisher's exact test), Q value = 0.72

Table S14006.  Gene #1318: 'NR3C1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
NR3C1 MUTATED 2 0 2 0
NR3C1 WILD-TYPE 31 31 25 19
'NR3C1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0957 (Fisher's exact test), Q value = 0.34

Table S14007.  Gene #1318: 'NR3C1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
NR3C1 MUTATED 2 2 0 0
NR3C1 WILD-TYPE 52 8 24 22
'HEATR4 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.256 (Fisher's exact test), Q value = 0.58

Table S14008.  Gene #1319: 'HEATR4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
HEATR4 MUTATED 2 0 1 2
HEATR4 WILD-TYPE 44 58 63 41
'HEATR4 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.114 (Fisher's exact test), Q value = 0.37

Table S14009.  Gene #1319: 'HEATR4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
HEATR4 MUTATED 2 0 3
HEATR4 WILD-TYPE 49 83 74
'HEATR4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00315 (Fisher's exact test), Q value = 0.05

Table S14010.  Gene #1319: 'HEATR4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
HEATR4 MUTATED 14 2 1 0
HEATR4 WILD-TYPE 164 181 100 20

Figure S3637.  Get High-res Image Gene #1319: 'HEATR4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'HEATR4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.024 (Fisher's exact test), Q value = 0.16

Table S14011.  Gene #1319: 'HEATR4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
HEATR4 MUTATED 7 0 4
HEATR4 WILD-TYPE 80 80 96

Figure S3638.  Get High-res Image Gene #1319: 'HEATR4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'HEATR4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0602 (Fisher's exact test), Q value = 0.27

Table S14012.  Gene #1319: 'HEATR4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
HEATR4 MUTATED 2 3 10
HEATR4 WILD-TYPE 87 157 128
'HEATR4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.505 (Fisher's exact test), Q value = 0.83

Table S14013.  Gene #1319: 'HEATR4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
HEATR4 MUTATED 9 5 1
HEATR4 WILD-TYPE 173 128 71
'HEATR4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.209 (Fisher's exact test), Q value = 0.52

Table S14014.  Gene #1319: 'HEATR4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
HEATR4 MUTATED 1 5 5 6
HEATR4 WILD-TYPE 111 91 87 180
'HEATR4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00831 (Fisher's exact test), Q value = 0.085

Table S14015.  Gene #1319: 'HEATR4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
HEATR4 MUTATED 2 1 7 1 1 1 4
HEATR4 WILD-TYPE 58 49 42 39 62 124 95

Figure S3639.  Get High-res Image Gene #1319: 'HEATR4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'HEATR4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.607 (Fisher's exact test), Q value = 0.91

Table S14016.  Gene #1319: 'HEATR4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
HEATR4 MUTATED 3 3 1 9
HEATR4 WILD-TYPE 127 75 67 187
'HEATR4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0295 (Fisher's exact test), Q value = 0.18

Table S14017.  Gene #1319: 'HEATR4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
HEATR4 MUTATED 1 2 2 1 7 2 0 1 0
HEATR4 WILD-TYPE 39 60 26 79 62 46 43 27 74

Figure S3640.  Get High-res Image Gene #1319: 'HEATR4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'HEATR4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0799 (Fisher's exact test), Q value = 0.3

Table S14018.  Gene #1319: 'HEATR4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
HEATR4 MUTATED 3 0 0 2
HEATR4 WILD-TYPE 30 31 27 17
'HEATR4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S14019.  Gene #1319: 'HEATR4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
HEATR4 MUTATED 3 0 1 1
HEATR4 WILD-TYPE 51 10 23 21
'BCAR3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00144 (Fisher's exact test), Q value = 0.031

Table S14020.  Gene #1320: 'BCAR3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
BCAR3 MUTATED 11 1 0 1
BCAR3 WILD-TYPE 167 182 101 19

Figure S3641.  Get High-res Image Gene #1320: 'BCAR3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'BCAR3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.101 (Fisher's exact test), Q value = 0.35

Table S14021.  Gene #1320: 'BCAR3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
BCAR3 MUTATED 7 1 4
BCAR3 WILD-TYPE 80 79 96
'BCAR3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.194 (Fisher's exact test), Q value = 0.5

Table S14022.  Gene #1320: 'BCAR3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
BCAR3 MUTATED 1 2 6
BCAR3 WILD-TYPE 88 158 132
'BCAR3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.326 (Fisher's exact test), Q value = 0.66

Table S14023.  Gene #1320: 'BCAR3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
BCAR3 MUTATED 6 1 2
BCAR3 WILD-TYPE 176 132 70
'BCAR3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00279 (Fisher's exact test), Q value = 0.047

Table S14024.  Gene #1320: 'BCAR3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
BCAR3 MUTATED 1 4 7 1
BCAR3 WILD-TYPE 111 92 85 185

Figure S3642.  Get High-res Image Gene #1320: 'BCAR3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'BCAR3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00099 (Fisher's exact test), Q value = 0.024

Table S14025.  Gene #1320: 'BCAR3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
BCAR3 MUTATED 0 2 6 1 2 0 2
BCAR3 WILD-TYPE 60 48 43 39 61 125 97

Figure S3643.  Get High-res Image Gene #1320: 'BCAR3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'BCAR3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.028 (Fisher's exact test), Q value = 0.17

Table S14026.  Gene #1320: 'BCAR3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
BCAR3 MUTATED 4 6 1 2
BCAR3 WILD-TYPE 126 72 67 194

Figure S3644.  Get High-res Image Gene #1320: 'BCAR3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'BCAR3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00867 (Fisher's exact test), Q value = 0.087

Table S14027.  Gene #1320: 'BCAR3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
BCAR3 MUTATED 2 6 0 0 3 0 1 1 0
BCAR3 WILD-TYPE 38 56 28 80 66 48 42 27 74

Figure S3645.  Get High-res Image Gene #1320: 'BCAR3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'BCAR3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0247 (Fisher's exact test), Q value = 0.16

Table S14028.  Gene #1320: 'BCAR3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
BCAR3 MUTATED 3 0 0 3
BCAR3 WILD-TYPE 30 31 27 16

Figure S3646.  Get High-res Image Gene #1320: 'BCAR3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'BCAR3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.565 (Fisher's exact test), Q value = 0.87

Table S14029.  Gene #1320: 'BCAR3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
BCAR3 MUTATED 5 0 1 0
BCAR3 WILD-TYPE 49 10 23 22
'OR2T34 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.194 (Fisher's exact test), Q value = 0.5

Table S14030.  Gene #1321: 'OR2T34 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
OR2T34 MUTATED 0 0 1 2
OR2T34 WILD-TYPE 46 58 63 41
'OR2T34 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.787 (Fisher's exact test), Q value = 1

Table S14031.  Gene #1321: 'OR2T34 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
OR2T34 MUTATED 0 2 1
OR2T34 WILD-TYPE 51 81 76
'OR2T34 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.734 (Fisher's exact test), Q value = 1

Table S14032.  Gene #1321: 'OR2T34 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
OR2T34 MUTATED 3 3 0 0
OR2T34 WILD-TYPE 175 180 101 20
'OR2T34 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.172 (Fisher's exact test), Q value = 0.47

Table S14033.  Gene #1321: 'OR2T34 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
OR2T34 MUTATED 1 4 0
OR2T34 WILD-TYPE 88 156 138
'OR2T34 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0443 (Fisher's exact test), Q value = 0.22

Table S14034.  Gene #1321: 'OR2T34 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
OR2T34 MUTATED 0 3 2
OR2T34 WILD-TYPE 182 130 70

Figure S3647.  Get High-res Image Gene #1321: 'OR2T34 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'OR2T34 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.334 (Fisher's exact test), Q value = 0.66

Table S14035.  Gene #1321: 'OR2T34 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
OR2T34 MUTATED 2 0 0 4
OR2T34 WILD-TYPE 110 96 92 182
'OR2T34 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.575 (Fisher's exact test), Q value = 0.88

Table S14036.  Gene #1321: 'OR2T34 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
OR2T34 MUTATED 2 1 0 0 0 1 2
OR2T34 WILD-TYPE 58 49 49 40 63 124 97
'OR2T34 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.83 (Fisher's exact test), Q value = 1

Table S14037.  Gene #1321: 'OR2T34 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
OR2T34 MUTATED 2 0 1 3
OR2T34 WILD-TYPE 128 78 67 193
'OR2T34 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.112 (Fisher's exact test), Q value = 0.37

Table S14038.  Gene #1321: 'OR2T34 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
OR2T34 MUTATED 0 0 2 0 2 0 1 0 1
OR2T34 WILD-TYPE 40 62 26 80 67 48 42 28 73
'POLDIP3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0737 (Fisher's exact test), Q value = 0.29

Table S14039.  Gene #1322: 'POLDIP3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
POLDIP3 MUTATED 2 0 0 2
POLDIP3 WILD-TYPE 44 58 64 41
'POLDIP3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.177 (Fisher's exact test), Q value = 0.48

Table S14040.  Gene #1322: 'POLDIP3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
POLDIP3 MUTATED 2 0 2
POLDIP3 WILD-TYPE 49 83 75
'POLDIP3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0058 (Fisher's exact test), Q value = 0.069

Table S14041.  Gene #1322: 'POLDIP3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
POLDIP3 MUTATED 6 0 0 1
POLDIP3 WILD-TYPE 172 183 101 19

Figure S3648.  Get High-res Image Gene #1322: 'POLDIP3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'POLDIP3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.173 (Fisher's exact test), Q value = 0.47

Table S14042.  Gene #1322: 'POLDIP3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
POLDIP3 MUTATED 1 4 0
POLDIP3 WILD-TYPE 88 156 138
'POLDIP3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.343 (Fisher's exact test), Q value = 0.67

Table S14043.  Gene #1322: 'POLDIP3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
POLDIP3 MUTATED 1 3 1
POLDIP3 WILD-TYPE 181 130 71
'POLDIP3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.324 (Fisher's exact test), Q value = 0.65

Table S14044.  Gene #1322: 'POLDIP3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
POLDIP3 MUTATED 0 1 1 5
POLDIP3 WILD-TYPE 112 95 91 181
'POLDIP3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0586 (Fisher's exact test), Q value = 0.26

Table S14045.  Gene #1322: 'POLDIP3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
POLDIP3 MUTATED 1 0 2 0 0 0 4
POLDIP3 WILD-TYPE 59 50 47 40 63 125 95
'POLDIP3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.436 (Fisher's exact test), Q value = 0.76

Table S14046.  Gene #1322: 'POLDIP3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
POLDIP3 MUTATED 2 0 0 5
POLDIP3 WILD-TYPE 128 78 68 191
'POLDIP3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00357 (Fisher's exact test), Q value = 0.054

Table S14047.  Gene #1322: 'POLDIP3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
POLDIP3 MUTATED 0 0 1 0 5 0 0 1 0
POLDIP3 WILD-TYPE 40 62 27 80 64 48 43 27 74

Figure S3649.  Get High-res Image Gene #1322: 'POLDIP3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'PNPLA8 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0264 (Fisher's exact test), Q value = 0.16

Table S14048.  Gene #1323: 'PNPLA8 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
PNPLA8 MUTATED 3 0 0 2
PNPLA8 WILD-TYPE 43 58 64 41

Figure S3650.  Get High-res Image Gene #1323: 'PNPLA8 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'PNPLA8 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00644 (Fisher's exact test), Q value = 0.074

Table S14049.  Gene #1323: 'PNPLA8 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
PNPLA8 MUTATED 4 0 1
PNPLA8 WILD-TYPE 47 83 76

Figure S3651.  Get High-res Image Gene #1323: 'PNPLA8 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'PNPLA8 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00064 (Fisher's exact test), Q value = 0.018

Table S14050.  Gene #1323: 'PNPLA8 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
PNPLA8 MUTATED 15 1 2 1
PNPLA8 WILD-TYPE 163 182 99 19

Figure S3652.  Get High-res Image Gene #1323: 'PNPLA8 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'PNPLA8 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.377 (Fisher's exact test), Q value = 0.71

Table S14051.  Gene #1323: 'PNPLA8 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
PNPLA8 MUTATED 6 2 7
PNPLA8 WILD-TYPE 81 78 93
'PNPLA8 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.271 (Fisher's exact test), Q value = 0.6

Table S14052.  Gene #1323: 'PNPLA8 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
PNPLA8 MUTATED 1 7 7
PNPLA8 WILD-TYPE 88 153 131
'PNPLA8 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.65 (Fisher's exact test), Q value = 0.94

Table S14053.  Gene #1323: 'PNPLA8 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
PNPLA8 MUTATED 7 4 4
PNPLA8 WILD-TYPE 175 129 68
'PNPLA8 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.346 (Fisher's exact test), Q value = 0.67

Table S14054.  Gene #1323: 'PNPLA8 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
PNPLA8 MUTATED 3 5 6 5
PNPLA8 WILD-TYPE 109 91 86 181
'PNPLA8 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0287 (Fisher's exact test), Q value = 0.17

Table S14055.  Gene #1323: 'PNPLA8 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
PNPLA8 MUTATED 4 3 4 1 3 0 4
PNPLA8 WILD-TYPE 56 47 45 39 60 125 95

Figure S3653.  Get High-res Image Gene #1323: 'PNPLA8 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'PNPLA8 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.454 (Fisher's exact test), Q value = 0.78

Table S14056.  Gene #1323: 'PNPLA8 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
PNPLA8 MUTATED 7 4 1 6
PNPLA8 WILD-TYPE 123 74 67 190
'PNPLA8 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.198 (Fisher's exact test), Q value = 0.5

Table S14057.  Gene #1323: 'PNPLA8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
PNPLA8 MUTATED 4 5 0 2 4 1 1 0 1
PNPLA8 WILD-TYPE 36 57 28 78 65 47 42 28 73
'PNPLA8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0138 (Fisher's exact test), Q value = 0.12

Table S14058.  Gene #1323: 'PNPLA8 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
PNPLA8 MUTATED 0 1 0 3
PNPLA8 WILD-TYPE 33 30 27 16

Figure S3654.  Get High-res Image Gene #1323: 'PNPLA8 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'PNPLA8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.866 (Fisher's exact test), Q value = 1

Table S14059.  Gene #1323: 'PNPLA8 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
PNPLA8 MUTATED 3 0 1 0
PNPLA8 WILD-TYPE 51 10 23 22
'C7ORF60 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0941 (Fisher's exact test), Q value = 0.34

Table S14060.  Gene #1324: 'C7ORF60 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
C7ORF60 MUTATED 5 0 1 0
C7ORF60 WILD-TYPE 173 183 100 20
'C7ORF60 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.521 (Fisher's exact test), Q value = 0.84

Table S14061.  Gene #1324: 'C7ORF60 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
C7ORF60 MUTATED 3 2 1
C7ORF60 WILD-TYPE 84 78 99
'C7ORF60 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.875 (Fisher's exact test), Q value = 1

Table S14062.  Gene #1324: 'C7ORF60 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
C7ORF60 MUTATED 1 2 3
C7ORF60 WILD-TYPE 88 158 135
'C7ORF60 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.758 (Fisher's exact test), Q value = 1

Table S14063.  Gene #1324: 'C7ORF60 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
C7ORF60 MUTATED 4 1 1
C7ORF60 WILD-TYPE 178 132 71
'C7ORF60 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0482 (Fisher's exact test), Q value = 0.23

Table S14064.  Gene #1324: 'C7ORF60 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
C7ORF60 MUTATED 1 3 2 0
C7ORF60 WILD-TYPE 111 93 90 186

Figure S3655.  Get High-res Image Gene #1324: 'C7ORF60 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'C7ORF60 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0833 (Fisher's exact test), Q value = 0.31

Table S14065.  Gene #1324: 'C7ORF60 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
C7ORF60 MUTATED 1 2 1 1 1 0 0
C7ORF60 WILD-TYPE 59 48 48 39 62 125 99
'C7ORF60 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.449 (Fisher's exact test), Q value = 0.77

Table S14066.  Gene #1324: 'C7ORF60 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
C7ORF60 MUTATED 3 1 1 1
C7ORF60 WILD-TYPE 127 77 67 195
'C7ORF60 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.632 (Fisher's exact test), Q value = 0.93

Table S14067.  Gene #1324: 'C7ORF60 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
C7ORF60 MUTATED 0 0 1 2 0 1 1 0 1
C7ORF60 WILD-TYPE 40 62 27 78 69 47 42 28 73
'C7ORF60 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S14068.  Gene #1324: 'C7ORF60 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
C7ORF60 MUTATED 1 1 1 0
C7ORF60 WILD-TYPE 32 30 26 19
'C7ORF60 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S14069.  Gene #1324: 'C7ORF60 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
C7ORF60 MUTATED 2 0 1 0
C7ORF60 WILD-TYPE 52 10 23 22
'SLC25A17 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0731 (Fisher's exact test), Q value = 0.29

Table S14070.  Gene #1325: 'SLC25A17 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
SLC25A17 MUTATED 2 0 0 2
SLC25A17 WILD-TYPE 44 58 64 41
'SLC25A17 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0403 (Fisher's exact test), Q value = 0.21

Table S14071.  Gene #1325: 'SLC25A17 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
SLC25A17 MUTATED 3 0 1
SLC25A17 WILD-TYPE 48 83 76

Figure S3656.  Get High-res Image Gene #1325: 'SLC25A17 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'SLC25A17 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00413 (Fisher's exact test), Q value = 0.059

Table S14072.  Gene #1325: 'SLC25A17 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
SLC25A17 MUTATED 8 0 0 0
SLC25A17 WILD-TYPE 170 183 101 20

Figure S3657.  Get High-res Image Gene #1325: 'SLC25A17 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'SLC25A17 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.557 (Fisher's exact test), Q value = 0.87

Table S14073.  Gene #1325: 'SLC25A17 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
SLC25A17 MUTATED 2 0 2
SLC25A17 WILD-TYPE 85 80 98
'SLC25A17 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.733 (Fisher's exact test), Q value = 1

Table S14074.  Gene #1325: 'SLC25A17 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
SLC25A17 MUTATED 1 3 4
SLC25A17 WILD-TYPE 88 157 134
'SLC25A17 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S14075.  Gene #1325: 'SLC25A17 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
SLC25A17 MUTATED 4 3 1
SLC25A17 WILD-TYPE 178 130 71
'SLC25A17 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.338 (Fisher's exact test), Q value = 0.67

Table S14076.  Gene #1325: 'SLC25A17 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
SLC25A17 MUTATED 0 1 2 5
SLC25A17 WILD-TYPE 112 95 90 181
'SLC25A17 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0211 (Fisher's exact test), Q value = 0.15

Table S14077.  Gene #1325: 'SLC25A17 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
SLC25A17 MUTATED 1 0 3 0 0 0 4
SLC25A17 WILD-TYPE 59 50 46 40 63 125 95

Figure S3658.  Get High-res Image Gene #1325: 'SLC25A17 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'SLC25A17 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.902 (Fisher's exact test), Q value = 1

Table S14078.  Gene #1325: 'SLC25A17 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
SLC25A17 MUTATED 2 1 0 4
SLC25A17 WILD-TYPE 128 77 68 192
'SLC25A17 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.42 (Fisher's exact test), Q value = 0.75

Table S14079.  Gene #1325: 'SLC25A17 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
SLC25A17 MUTATED 1 2 0 0 3 0 0 0 1
SLC25A17 WILD-TYPE 39 60 28 80 66 48 43 28 73
'KRTAP10-11 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.735 (Fisher's exact test), Q value = 1

Table S14080.  Gene #1326: 'KRTAP10-11 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
KRTAP10-11 MUTATED 3 3 0 0
KRTAP10-11 WILD-TYPE 175 180 101 20
'KRTAP10-11 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.739 (Fisher's exact test), Q value = 1

Table S14081.  Gene #1326: 'KRTAP10-11 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
KRTAP10-11 MUTATED 2 2 1
KRTAP10-11 WILD-TYPE 85 78 99
'KRTAP10-11 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0772 (Fisher's exact test), Q value = 0.3

Table S14082.  Gene #1326: 'KRTAP10-11 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
KRTAP10-11 MUTATED 0 1 5
KRTAP10-11 WILD-TYPE 89 159 133
'KRTAP10-11 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.667 (Fisher's exact test), Q value = 0.95

Table S14083.  Gene #1326: 'KRTAP10-11 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
KRTAP10-11 MUTATED 4 2 0
KRTAP10-11 WILD-TYPE 178 131 72
'KRTAP10-11 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.394 (Fisher's exact test), Q value = 0.72

Table S14084.  Gene #1326: 'KRTAP10-11 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
KRTAP10-11 MUTATED 3 1 1 1
KRTAP10-11 WILD-TYPE 109 95 91 185
'KRTAP10-11 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0277 (Fisher's exact test), Q value = 0.17

Table S14085.  Gene #1326: 'KRTAP10-11 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
KRTAP10-11 MUTATED 3 0 2 0 0 0 1
KRTAP10-11 WILD-TYPE 57 50 47 40 63 125 98

Figure S3659.  Get High-res Image Gene #1326: 'KRTAP10-11 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'KRTAP10-11 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.943 (Fisher's exact test), Q value = 1

Table S14086.  Gene #1326: 'KRTAP10-11 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
KRTAP10-11 MUTATED 2 1 1 2
KRTAP10-11 WILD-TYPE 128 77 67 194
'KRTAP10-11 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.306 (Fisher's exact test), Q value = 0.64

Table S14087.  Gene #1326: 'KRTAP10-11 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
KRTAP10-11 MUTATED 0 1 2 1 1 1 0 0 0
KRTAP10-11 WILD-TYPE 40 61 26 79 68 47 43 28 74
'KRTAP10-11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.484 (Fisher's exact test), Q value = 0.81

Table S14088.  Gene #1326: 'KRTAP10-11 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
KRTAP10-11 MUTATED 2 0 1 0
KRTAP10-11 WILD-TYPE 31 31 26 19
'KRTAP10-11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.695 (Fisher's exact test), Q value = 0.97

Table S14089.  Gene #1326: 'KRTAP10-11 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
KRTAP10-11 MUTATED 1 0 1 1
KRTAP10-11 WILD-TYPE 53 10 23 21
'GTF3C1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0069 (Fisher's exact test), Q value = 0.076

Table S14090.  Gene #1327: 'GTF3C1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
GTF3C1 MUTATED 5 1 0 4
GTF3C1 WILD-TYPE 41 57 64 39

Figure S3660.  Get High-res Image Gene #1327: 'GTF3C1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'GTF3C1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0243 (Fisher's exact test), Q value = 0.16

Table S14091.  Gene #1327: 'GTF3C1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
GTF3C1 MUTATED 6 1 3
GTF3C1 WILD-TYPE 45 82 74

Figure S3661.  Get High-res Image Gene #1327: 'GTF3C1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'GTF3C1 MUTATION STATUS' versus 'CN_CNMF'

P value = 4e-05 (Fisher's exact test), Q value = 0.0027

Table S14092.  Gene #1327: 'GTF3C1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
GTF3C1 MUTATED 24 4 2 0
GTF3C1 WILD-TYPE 154 179 99 20

Figure S3662.  Get High-res Image Gene #1327: 'GTF3C1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'GTF3C1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 2e-04 (Fisher's exact test), Q value = 0.0083

Table S14093.  Gene #1327: 'GTF3C1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
GTF3C1 MUTATED 6 0 15
GTF3C1 WILD-TYPE 81 80 85

Figure S3663.  Get High-res Image Gene #1327: 'GTF3C1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'GTF3C1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.161 (Fisher's exact test), Q value = 0.45

Table S14094.  Gene #1327: 'GTF3C1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
GTF3C1 MUTATED 4 8 14
GTF3C1 WILD-TYPE 85 152 124
'GTF3C1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.964 (Fisher's exact test), Q value = 1

Table S14095.  Gene #1327: 'GTF3C1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
GTF3C1 MUTATED 13 9 4
GTF3C1 WILD-TYPE 169 124 68
'GTF3C1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00043 (Fisher's exact test), Q value = 0.014

Table S14096.  Gene #1327: 'GTF3C1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
GTF3C1 MUTATED 0 10 10 10
GTF3C1 WILD-TYPE 112 86 82 176

Figure S3664.  Get High-res Image Gene #1327: 'GTF3C1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'GTF3C1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 3e-05 (Fisher's exact test), Q value = 0.0022

Table S14097.  Gene #1327: 'GTF3C1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
GTF3C1 MUTATED 1 4 12 2 1 2 8
GTF3C1 WILD-TYPE 59 46 37 38 62 123 91

Figure S3665.  Get High-res Image Gene #1327: 'GTF3C1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'GTF3C1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.138 (Fisher's exact test), Q value = 0.41

Table S14098.  Gene #1327: 'GTF3C1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
GTF3C1 MUTATED 12 3 1 13
GTF3C1 WILD-TYPE 118 75 67 183
'GTF3C1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.028 (Fisher's exact test), Q value = 0.17

Table S14099.  Gene #1327: 'GTF3C1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
GTF3C1 MUTATED 2 5 1 4 9 1 4 3 0
GTF3C1 WILD-TYPE 38 57 27 76 60 47 39 25 74

Figure S3666.  Get High-res Image Gene #1327: 'GTF3C1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'GTF3C1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00872 (Fisher's exact test), Q value = 0.087

Table S14100.  Gene #1327: 'GTF3C1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
GTF3C1 MUTATED 2 1 0 5
GTF3C1 WILD-TYPE 31 30 27 14

Figure S3667.  Get High-res Image Gene #1327: 'GTF3C1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'GTF3C1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.222 (Fisher's exact test), Q value = 0.54

Table S14101.  Gene #1327: 'GTF3C1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
GTF3C1 MUTATED 7 0 1 0
GTF3C1 WILD-TYPE 47 10 23 22
'WAC MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0324 (Fisher's exact test), Q value = 0.18

Table S14102.  Gene #1328: 'WAC MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
WAC MUTATED 3 0 0 1
WAC WILD-TYPE 43 58 64 42

Figure S3668.  Get High-res Image Gene #1328: 'WAC MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'WAC MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.558 (Fisher's exact test), Q value = 0.87

Table S14103.  Gene #1328: 'WAC MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
WAC MUTATED 2 1 1
WAC WILD-TYPE 49 82 76
'WAC MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00261 (Fisher's exact test), Q value = 0.045

Table S14104.  Gene #1328: 'WAC MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
WAC MUTATED 10 2 0 2
WAC WILD-TYPE 168 181 101 18

Figure S3669.  Get High-res Image Gene #1328: 'WAC MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'WAC MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.636 (Fisher's exact test), Q value = 0.93

Table S14105.  Gene #1328: 'WAC MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
WAC MUTATED 5 2 4
WAC WILD-TYPE 82 78 96
'WAC MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.774 (Fisher's exact test), Q value = 1

Table S14106.  Gene #1328: 'WAC MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
WAC MUTATED 3 3 4
WAC WILD-TYPE 86 157 134
'WAC MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.117 (Fisher's exact test), Q value = 0.38

Table S14107.  Gene #1328: 'WAC MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
WAC MUTATED 8 1 1
WAC WILD-TYPE 174 132 71
'WAC MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.508 (Fisher's exact test), Q value = 0.83

Table S14108.  Gene #1328: 'WAC MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
WAC MUTATED 2 3 5 5
WAC WILD-TYPE 110 93 87 181
'WAC MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0885 (Fisher's exact test), Q value = 0.32

Table S14109.  Gene #1328: 'WAC MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
WAC MUTATED 0 1 3 0 5 2 4
WAC WILD-TYPE 60 49 46 40 58 123 95
'WAC MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0409 (Fisher's exact test), Q value = 0.21

Table S14110.  Gene #1328: 'WAC MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
WAC MUTATED 2 6 0 7
WAC WILD-TYPE 128 72 68 189

Figure S3670.  Get High-res Image Gene #1328: 'WAC MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'WAC MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0423 (Fisher's exact test), Q value = 0.22

Table S14111.  Gene #1328: 'WAC MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
WAC MUTATED 3 4 2 2 4 0 0 0 0
WAC WILD-TYPE 37 58 26 78 65 48 43 28 74

Figure S3671.  Get High-res Image Gene #1328: 'WAC MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'WAC MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.392 (Fisher's exact test), Q value = 0.72

Table S14112.  Gene #1328: 'WAC MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
WAC MUTATED 2 1 0 2
WAC WILD-TYPE 31 30 27 17
'WAC MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.758 (Fisher's exact test), Q value = 1

Table S14113.  Gene #1328: 'WAC MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
WAC MUTATED 4 0 1 0
WAC WILD-TYPE 50 10 23 22
'NFKBIE MUTATION STATUS' versus 'CN_CNMF'

P value = 0.734 (Fisher's exact test), Q value = 1

Table S14114.  Gene #1329: 'NFKBIE MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
NFKBIE MUTATED 2 2 0 0
NFKBIE WILD-TYPE 176 181 101 20
'NFKBIE MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.2 (Fisher's exact test), Q value = 0.5

Table S14115.  Gene #1329: 'NFKBIE MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
NFKBIE MUTATED 1 2 0
NFKBIE WILD-TYPE 86 78 100
'NFKBIE MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.552 (Fisher's exact test), Q value = 0.87

Table S14116.  Gene #1329: 'NFKBIE MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
NFKBIE MUTATED 0 3 1
NFKBIE WILD-TYPE 89 157 137
'NFKBIE MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.529 (Fisher's exact test), Q value = 0.85

Table S14117.  Gene #1329: 'NFKBIE MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
NFKBIE MUTATED 1 2 1
NFKBIE WILD-TYPE 181 131 71
'NFKBIE MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.552 (Fisher's exact test), Q value = 0.87

Table S14118.  Gene #1329: 'NFKBIE MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
NFKBIE MUTATED 2 0 1 1
NFKBIE WILD-TYPE 110 96 91 185
'NFKBIE MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.39 (Fisher's exact test), Q value = 0.72

Table S14119.  Gene #1329: 'NFKBIE MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
NFKBIE MUTATED 1 0 0 1 1 0 1
NFKBIE WILD-TYPE 59 50 49 39 62 125 98
'NFKBIE MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.663 (Fisher's exact test), Q value = 0.95

Table S14120.  Gene #1329: 'NFKBIE MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
NFKBIE MUTATED 1 1 1 1
NFKBIE WILD-TYPE 129 77 67 195
'NFKBIE MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.162 (Fisher's exact test), Q value = 0.45

Table S14121.  Gene #1329: 'NFKBIE MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
NFKBIE MUTATED 1 1 1 0 0 0 1 0 0
NFKBIE WILD-TYPE 39 61 27 80 69 48 42 28 74
'RRM2B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.177 (Fisher's exact test), Q value = 0.48

Table S14122.  Gene #1330: 'RRM2B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
RRM2B MUTATED 4 0 1 0
RRM2B WILD-TYPE 174 183 100 20
'RRM2B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.739 (Fisher's exact test), Q value = 1

Table S14123.  Gene #1330: 'RRM2B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
RRM2B MUTATED 2 2 1
RRM2B WILD-TYPE 85 78 99
'RRM2B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.296 (Fisher's exact test), Q value = 0.63

Table S14124.  Gene #1330: 'RRM2B MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
RRM2B MUTATED 0 4 1
RRM2B WILD-TYPE 89 156 137
'RRM2B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.595 (Fisher's exact test), Q value = 0.9

Table S14125.  Gene #1330: 'RRM2B MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
RRM2B MUTATED 2 3 0
RRM2B WILD-TYPE 180 130 72
'RRM2B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.775 (Fisher's exact test), Q value = 1

Table S14126.  Gene #1330: 'RRM2B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
RRM2B MUTATED 2 1 1 1
RRM2B WILD-TYPE 110 95 91 185
'RRM2B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0718 (Fisher's exact test), Q value = 0.29

Table S14127.  Gene #1330: 'RRM2B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
RRM2B MUTATED 2 0 2 0 0 0 1
RRM2B WILD-TYPE 58 50 47 40 63 125 98
'RRM2B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.634 (Fisher's exact test), Q value = 0.93

Table S14128.  Gene #1330: 'RRM2B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
RRM2B MUTATED 2 1 1 1
RRM2B WILD-TYPE 128 77 67 195
'RRM2B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.15 (Fisher's exact test), Q value = 0.43

Table S14129.  Gene #1330: 'RRM2B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
RRM2B MUTATED 2 1 1 0 0 0 0 0 1
RRM2B WILD-TYPE 38 61 27 80 69 48 43 28 73
'KRTAP20-1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.177 (Fisher's exact test), Q value = 0.48

Table S14130.  Gene #1331: 'KRTAP20-1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
KRTAP20-1 MUTATED 1 0 2 0
KRTAP20-1 WILD-TYPE 177 183 99 20
'KRTAP20-1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S14131.  Gene #1331: 'KRTAP20-1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
KRTAP20-1 MUTATED 1 1 1
KRTAP20-1 WILD-TYPE 86 79 99
'KRTAP20-1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.121 (Fisher's exact test), Q value = 0.39

Table S14132.  Gene #1331: 'KRTAP20-1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
KRTAP20-1 MUTATED 1 2 0 0
KRTAP20-1 WILD-TYPE 111 94 92 186
'KRTAP20-1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.114 (Fisher's exact test), Q value = 0.37

Table S14133.  Gene #1331: 'KRTAP20-1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
KRTAP20-1 MUTATED 1 1 0 1 0 0 0
KRTAP20-1 WILD-TYPE 59 49 49 39 63 125 99
'KRTAP20-1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.148 (Fisher's exact test), Q value = 0.43

Table S14134.  Gene #1331: 'KRTAP20-1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
KRTAP20-1 MUTATED 2 0 1 0
KRTAP20-1 WILD-TYPE 128 78 67 196
'KRTAP20-1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0992 (Fisher's exact test), Q value = 0.35

Table S14135.  Gene #1331: 'KRTAP20-1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
KRTAP20-1 MUTATED 0 0 1 0 0 1 1 0 0
KRTAP20-1 WILD-TYPE 40 62 27 80 69 47 42 28 74
'TAF6 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.016 (Fisher's exact test), Q value = 0.13

Table S14136.  Gene #1332: 'TAF6 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
TAF6 MUTATED 1 0 0 3
TAF6 WILD-TYPE 45 58 64 40

Figure S3672.  Get High-res Image Gene #1332: 'TAF6 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'TAF6 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0402 (Fisher's exact test), Q value = 0.21

Table S14137.  Gene #1332: 'TAF6 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
TAF6 MUTATED 3 0 1
TAF6 WILD-TYPE 48 83 76

Figure S3673.  Get High-res Image Gene #1332: 'TAF6 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'TAF6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.206 (Fisher's exact test), Q value = 0.51

Table S14138.  Gene #1332: 'TAF6 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
TAF6 MUTATED 6 1 3 0
TAF6 WILD-TYPE 172 182 98 20
'TAF6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.593 (Fisher's exact test), Q value = 0.9

Table S14139.  Gene #1332: 'TAF6 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
TAF6 MUTATED 1 3 2
TAF6 WILD-TYPE 86 77 98
'TAF6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0698 (Fisher's exact test), Q value = 0.28

Table S14140.  Gene #1332: 'TAF6 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
TAF6 MUTATED 0 2 6
TAF6 WILD-TYPE 89 158 132
'TAF6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0703 (Fisher's exact test), Q value = 0.29

Table S14141.  Gene #1332: 'TAF6 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
TAF6 MUTATED 6 0 2
TAF6 WILD-TYPE 176 133 70
'TAF6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.614 (Fisher's exact test), Q value = 0.91

Table S14142.  Gene #1332: 'TAF6 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
TAF6 MUTATED 4 1 2 3
TAF6 WILD-TYPE 108 95 90 183
'TAF6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.105 (Fisher's exact test), Q value = 0.36

Table S14143.  Gene #1332: 'TAF6 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
TAF6 MUTATED 3 0 2 1 1 0 3
TAF6 WILD-TYPE 57 50 47 39 62 125 96
'TAF6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.421 (Fisher's exact test), Q value = 0.75

Table S14144.  Gene #1332: 'TAF6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
TAF6 MUTATED 4 1 2 2
TAF6 WILD-TYPE 126 77 66 194
'TAF6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.477 (Fisher's exact test), Q value = 0.81

Table S14145.  Gene #1332: 'TAF6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
TAF6 MUTATED 0 1 1 1 3 2 1 0 0
TAF6 WILD-TYPE 40 61 27 79 66 46 42 28 74
'URGCP MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.118 (Fisher's exact test), Q value = 0.38

Table S14146.  Gene #1333: 'URGCP MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
URGCP MUTATED 2 0 0 1
URGCP WILD-TYPE 44 58 64 42
'URGCP MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.184 (Fisher's exact test), Q value = 0.48

Table S14147.  Gene #1333: 'URGCP MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
URGCP MUTATED 2 0 1
URGCP WILD-TYPE 49 83 76
'URGCP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.007 (Fisher's exact test), Q value = 0.077

Table S14148.  Gene #1333: 'URGCP MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
URGCP MUTATED 14 3 1 0
URGCP WILD-TYPE 164 180 100 20

Figure S3674.  Get High-res Image Gene #1333: 'URGCP MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'URGCP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0153 (Fisher's exact test), Q value = 0.12

Table S14149.  Gene #1333: 'URGCP MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
URGCP MUTATED 10 1 4
URGCP WILD-TYPE 77 79 96

Figure S3675.  Get High-res Image Gene #1333: 'URGCP MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'URGCP MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.65 (Fisher's exact test), Q value = 0.94

Table S14150.  Gene #1333: 'URGCP MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
URGCP MUTATED 2 8 6
URGCP WILD-TYPE 87 152 132
'URGCP MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.444 (Fisher's exact test), Q value = 0.77

Table S14151.  Gene #1333: 'URGCP MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
URGCP MUTATED 6 5 5
URGCP WILD-TYPE 176 128 67
'URGCP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0683 (Fisher's exact test), Q value = 0.28

Table S14152.  Gene #1333: 'URGCP MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
URGCP MUTATED 3 5 7 3
URGCP WILD-TYPE 109 91 85 183
'URGCP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00058 (Fisher's exact test), Q value = 0.017

Table S14153.  Gene #1333: 'URGCP MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
URGCP MUTATED 2 3 6 0 5 0 2
URGCP WILD-TYPE 58 47 43 40 58 125 97

Figure S3676.  Get High-res Image Gene #1333: 'URGCP MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'URGCP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.254 (Fisher's exact test), Q value = 0.58

Table S14154.  Gene #1333: 'URGCP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
URGCP MUTATED 5 6 1 6
URGCP WILD-TYPE 125 72 67 190
'URGCP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.185 (Fisher's exact test), Q value = 0.49

Table S14155.  Gene #1333: 'URGCP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
URGCP MUTATED 3 5 1 2 5 1 0 0 1
URGCP WILD-TYPE 37 57 27 78 64 47 43 28 73
'URGCP MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0697 (Fisher's exact test), Q value = 0.28

Table S14156.  Gene #1333: 'URGCP MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
URGCP MUTATED 1 1 1 4
URGCP WILD-TYPE 32 30 26 15
'URGCP MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.547 (Fisher's exact test), Q value = 0.87

Table S14157.  Gene #1333: 'URGCP MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
URGCP MUTATED 4 1 2 0
URGCP WILD-TYPE 50 9 22 22
'CHRNA3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.282 (Fisher's exact test), Q value = 0.61

Table S14158.  Gene #1334: 'CHRNA3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
CHRNA3 MUTATED 6 2 2 1
CHRNA3 WILD-TYPE 172 181 99 19
'CHRNA3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.305 (Fisher's exact test), Q value = 0.64

Table S14159.  Gene #1334: 'CHRNA3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
CHRNA3 MUTATED 5 1 4
CHRNA3 WILD-TYPE 82 79 96
'CHRNA3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.466 (Fisher's exact test), Q value = 0.79

Table S14160.  Gene #1334: 'CHRNA3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
CHRNA3 MUTATED 3 2 4
CHRNA3 WILD-TYPE 86 158 134
'CHRNA3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.239 (Fisher's exact test), Q value = 0.56

Table S14161.  Gene #1334: 'CHRNA3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
CHRNA3 MUTATED 5 1 3
CHRNA3 WILD-TYPE 177 132 69
'CHRNA3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0503 (Fisher's exact test), Q value = 0.24

Table S14162.  Gene #1334: 'CHRNA3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
CHRNA3 MUTATED 2 5 3 1
CHRNA3 WILD-TYPE 110 91 89 185
'CHRNA3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00661 (Fisher's exact test), Q value = 0.074

Table S14163.  Gene #1334: 'CHRNA3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
CHRNA3 MUTATED 1 1 5 1 2 0 1
CHRNA3 WILD-TYPE 59 49 44 39 61 125 98

Figure S3677.  Get High-res Image Gene #1334: 'CHRNA3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CHRNA3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00592 (Fisher's exact test), Q value = 0.07

Table S14164.  Gene #1334: 'CHRNA3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
CHRNA3 MUTATED 8 2 0 1
CHRNA3 WILD-TYPE 122 76 68 195

Figure S3678.  Get High-res Image Gene #1334: 'CHRNA3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'CHRNA3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.402 (Fisher's exact test), Q value = 0.73

Table S14165.  Gene #1334: 'CHRNA3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
CHRNA3 MUTATED 1 2 2 2 3 1 0 0 0
CHRNA3 WILD-TYPE 39 60 26 78 66 47 43 28 74
'CHRNA3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.304 (Fisher's exact test), Q value = 0.63

Table S14166.  Gene #1334: 'CHRNA3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
CHRNA3 MUTATED 2 0 1 2
CHRNA3 WILD-TYPE 31 31 26 17
'CHRNA3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.191 (Fisher's exact test), Q value = 0.49

Table S14167.  Gene #1334: 'CHRNA3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
CHRNA3 MUTATED 2 0 3 0
CHRNA3 WILD-TYPE 52 10 21 22
'RUNX2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0315 (Fisher's exact test), Q value = 0.18

Table S14168.  Gene #1335: 'RUNX2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
RUNX2 MUTATED 3 0 0 1
RUNX2 WILD-TYPE 43 58 64 42

Figure S3679.  Get High-res Image Gene #1335: 'RUNX2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'RUNX2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0598 (Fisher's exact test), Q value = 0.27

Table S14169.  Gene #1335: 'RUNX2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
RUNX2 MUTATED 3 1 0
RUNX2 WILD-TYPE 48 82 77
'RUNX2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00143 (Fisher's exact test), Q value = 0.031

Table S14170.  Gene #1335: 'RUNX2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
RUNX2 MUTATED 9 0 0 0
RUNX2 WILD-TYPE 169 183 101 20

Figure S3680.  Get High-res Image Gene #1335: 'RUNX2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'RUNX2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.251 (Fisher's exact test), Q value = 0.58

Table S14171.  Gene #1335: 'RUNX2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
RUNX2 MUTATED 2 0 4
RUNX2 WILD-TYPE 85 80 96
'RUNX2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.156 (Fisher's exact test), Q value = 0.44

Table S14172.  Gene #1335: 'RUNX2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
RUNX2 MUTATED 2 1 5
RUNX2 WILD-TYPE 87 159 133
'RUNX2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0506 (Fisher's exact test), Q value = 0.24

Table S14173.  Gene #1335: 'RUNX2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
RUNX2 MUTATED 5 0 3
RUNX2 WILD-TYPE 177 133 69
'RUNX2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0138 (Fisher's exact test), Q value = 0.12

Table S14174.  Gene #1335: 'RUNX2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
RUNX2 MUTATED 0 0 5 4
RUNX2 WILD-TYPE 112 96 87 182

Figure S3681.  Get High-res Image Gene #1335: 'RUNX2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'RUNX2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0044 (Fisher's exact test), Q value = 0.061

Table S14175.  Gene #1335: 'RUNX2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
RUNX2 MUTATED 0 0 5 0 0 1 3
RUNX2 WILD-TYPE 60 50 44 40 63 124 96

Figure S3682.  Get High-res Image Gene #1335: 'RUNX2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'RUNX2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.284 (Fisher's exact test), Q value = 0.61

Table S14176.  Gene #1335: 'RUNX2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
RUNX2 MUTATED 4 0 0 5
RUNX2 WILD-TYPE 126 78 68 191
'RUNX2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.153 (Fisher's exact test), Q value = 0.44

Table S14177.  Gene #1335: 'RUNX2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
RUNX2 MUTATED 0 3 0 2 4 0 0 0 0
RUNX2 WILD-TYPE 40 59 28 78 65 48 43 28 74
'RUNX2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00061 (Fisher's exact test), Q value = 0.018

Table S14178.  Gene #1335: 'RUNX2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
RUNX2 MUTATED 0 0 0 4
RUNX2 WILD-TYPE 33 31 27 15

Figure S3683.  Get High-res Image Gene #1335: 'RUNX2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'RUNX2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.87 (Fisher's exact test), Q value = 1

Table S14179.  Gene #1335: 'RUNX2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
RUNX2 MUTATED 3 0 1 0
RUNX2 WILD-TYPE 51 10 23 22
'ZNF354C MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00503 (Fisher's exact test), Q value = 0.064

Table S14180.  Gene #1336: 'ZNF354C MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ZNF354C MUTATED 4 0 0 3
ZNF354C WILD-TYPE 42 58 64 40

Figure S3684.  Get High-res Image Gene #1336: 'ZNF354C MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'ZNF354C MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0156 (Fisher's exact test), Q value = 0.12

Table S14181.  Gene #1336: 'ZNF354C MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ZNF354C MUTATED 5 1 1
ZNF354C WILD-TYPE 46 82 76

Figure S3685.  Get High-res Image Gene #1336: 'ZNF354C MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'ZNF354C MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0255 (Fisher's exact test), Q value = 0.16

Table S14182.  Gene #1336: 'ZNF354C MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ZNF354C MUTATED 13 4 1 0
ZNF354C WILD-TYPE 165 179 100 20

Figure S3686.  Get High-res Image Gene #1336: 'ZNF354C MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ZNF354C MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.192 (Fisher's exact test), Q value = 0.49

Table S14183.  Gene #1336: 'ZNF354C MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ZNF354C MUTATED 7 2 3
ZNF354C WILD-TYPE 80 78 97
'ZNF354C MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.708 (Fisher's exact test), Q value = 0.98

Table S14184.  Gene #1336: 'ZNF354C MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ZNF354C MUTATED 3 5 7
ZNF354C WILD-TYPE 86 155 131
'ZNF354C MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.649 (Fisher's exact test), Q value = 0.94

Table S14185.  Gene #1336: 'ZNF354C MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ZNF354C MUTATED 7 4 4
ZNF354C WILD-TYPE 175 129 68
'ZNF354C MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.519 (Fisher's exact test), Q value = 0.84

Table S14186.  Gene #1336: 'ZNF354C MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ZNF354C MUTATED 3 3 6 6
ZNF354C WILD-TYPE 109 93 86 180
'ZNF354C MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.234 (Fisher's exact test), Q value = 0.56

Table S14187.  Gene #1336: 'ZNF354C MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ZNF354C MUTATED 4 1 3 1 3 1 5
ZNF354C WILD-TYPE 56 49 46 39 60 124 94
'ZNF354C MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.726 (Fisher's exact test), Q value = 0.99

Table S14188.  Gene #1336: 'ZNF354C MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ZNF354C MUTATED 3 4 2 8
ZNF354C WILD-TYPE 127 74 66 188
'ZNF354C MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0364 (Fisher's exact test), Q value = 0.2

Table S14189.  Gene #1336: 'ZNF354C MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ZNF354C MUTATED 0 4 0 0 6 2 2 2 1
ZNF354C WILD-TYPE 40 58 28 80 63 46 41 26 73

Figure S3687.  Get High-res Image Gene #1336: 'ZNF354C MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'ZNF354C MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.267 (Fisher's exact test), Q value = 0.59

Table S14190.  Gene #1336: 'ZNF354C MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
ZNF354C MUTATED 1 1 1 3
ZNF354C WILD-TYPE 32 30 26 16
'ZNF354C MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.363 (Fisher's exact test), Q value = 0.69

Table S14191.  Gene #1336: 'ZNF354C MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
ZNF354C MUTATED 2 0 3 1
ZNF354C WILD-TYPE 52 10 21 21
'PACS2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.045 (Fisher's exact test), Q value = 0.23

Table S14192.  Gene #1337: 'PACS2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
PACS2 MUTATED 5 0 0 0
PACS2 WILD-TYPE 173 183 101 20

Figure S3688.  Get High-res Image Gene #1337: 'PACS2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'PACS2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.197 (Fisher's exact test), Q value = 0.5

Table S14193.  Gene #1337: 'PACS2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
PACS2 MUTATED 1 0 4
PACS2 WILD-TYPE 86 80 96
'PACS2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.832 (Fisher's exact test), Q value = 1

Table S14194.  Gene #1337: 'PACS2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
PACS2 MUTATED 1 1 2
PACS2 WILD-TYPE 88 159 136
'PACS2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.674 (Fisher's exact test), Q value = 0.96

Table S14195.  Gene #1337: 'PACS2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
PACS2 MUTATED 3 1 0
PACS2 WILD-TYPE 179 132 72
'PACS2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.014 (Fisher's exact test), Q value = 0.12

Table S14196.  Gene #1337: 'PACS2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
PACS2 MUTATED 0 2 3 0
PACS2 WILD-TYPE 112 94 89 186

Figure S3689.  Get High-res Image Gene #1337: 'PACS2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'PACS2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 3e-04 (Fisher's exact test), Q value = 0.011

Table S14197.  Gene #1337: 'PACS2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
PACS2 MUTATED 0 1 4 0 0 0 0
PACS2 WILD-TYPE 60 49 45 40 63 125 99

Figure S3690.  Get High-res Image Gene #1337: 'PACS2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'PACS2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0364 (Fisher's exact test), Q value = 0.2

Table S14198.  Gene #1337: 'PACS2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
PACS2 MUTATED 4 1 0 0
PACS2 WILD-TYPE 126 77 68 196

Figure S3691.  Get High-res Image Gene #1337: 'PACS2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'PACS2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.323 (Fisher's exact test), Q value = 0.65

Table S14199.  Gene #1337: 'PACS2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
PACS2 MUTATED 1 2 0 0 2 0 0 0 0
PACS2 WILD-TYPE 39 60 28 80 67 48 43 28 74
'PACS2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.137 (Fisher's exact test), Q value = 0.41

Table S14200.  Gene #1337: 'PACS2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
PACS2 MUTATED 1 0 0 2
PACS2 WILD-TYPE 32 31 27 17
'PACS2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.566 (Fisher's exact test), Q value = 0.87

Table S14201.  Gene #1337: 'PACS2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
PACS2 MUTATED 3 0 0 0
PACS2 WILD-TYPE 51 10 24 22
'HIF3A MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0271 (Fisher's exact test), Q value = 0.17

Table S14202.  Gene #1338: 'HIF3A MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
HIF3A MUTATED 3 0 0 2
HIF3A WILD-TYPE 43 58 64 41

Figure S3692.  Get High-res Image Gene #1338: 'HIF3A MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'HIF3A MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0192 (Fisher's exact test), Q value = 0.14

Table S14203.  Gene #1338: 'HIF3A MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
HIF3A MUTATED 4 1 0
HIF3A WILD-TYPE 47 82 77

Figure S3693.  Get High-res Image Gene #1338: 'HIF3A MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'HIF3A MUTATION STATUS' versus 'CN_CNMF'

P value = 9e-05 (Fisher's exact test), Q value = 0.0048

Table S14204.  Gene #1338: 'HIF3A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
HIF3A MUTATED 14 0 1 0
HIF3A WILD-TYPE 164 183 100 20

Figure S3694.  Get High-res Image Gene #1338: 'HIF3A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'HIF3A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0769 (Fisher's exact test), Q value = 0.3

Table S14205.  Gene #1338: 'HIF3A MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
HIF3A MUTATED 3 0 6
HIF3A WILD-TYPE 84 80 94
'HIF3A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.419 (Fisher's exact test), Q value = 0.75

Table S14206.  Gene #1338: 'HIF3A MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
HIF3A MUTATED 1 5 6
HIF3A WILD-TYPE 88 155 132
'HIF3A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.246 (Fisher's exact test), Q value = 0.57

Table S14207.  Gene #1338: 'HIF3A MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
HIF3A MUTATED 7 5 0
HIF3A WILD-TYPE 175 128 72
'HIF3A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0649 (Fisher's exact test), Q value = 0.28

Table S14208.  Gene #1338: 'HIF3A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
HIF3A MUTATED 0 5 4 6
HIF3A WILD-TYPE 112 91 88 180
'HIF3A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 6e-05 (Fisher's exact test), Q value = 0.0037

Table S14209.  Gene #1338: 'HIF3A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
HIF3A MUTATED 0 1 7 0 1 0 6
HIF3A WILD-TYPE 60 49 42 40 62 125 93

Figure S3695.  Get High-res Image Gene #1338: 'HIF3A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'HIF3A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.478 (Fisher's exact test), Q value = 0.81

Table S14210.  Gene #1338: 'HIF3A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
HIF3A MUTATED 5 2 0 7
HIF3A WILD-TYPE 125 76 68 189
'HIF3A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0665 (Fisher's exact test), Q value = 0.28

Table S14211.  Gene #1338: 'HIF3A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
HIF3A MUTATED 1 2 2 1 5 0 1 2 0
HIF3A WILD-TYPE 39 60 26 79 64 48 42 26 74
'HIF3A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00386 (Fisher's exact test), Q value = 0.056

Table S14212.  Gene #1338: 'HIF3A MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
HIF3A MUTATED 1 0 0 4
HIF3A WILD-TYPE 32 31 27 15

Figure S3696.  Get High-res Image Gene #1338: 'HIF3A MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'HIF3A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.577 (Fisher's exact test), Q value = 0.88

Table S14213.  Gene #1338: 'HIF3A MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
HIF3A MUTATED 3 0 2 0
HIF3A WILD-TYPE 51 10 22 22
'ADH7 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00787 (Fisher's exact test), Q value = 0.083

Table S14214.  Gene #1339: 'ADH7 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ADH7 MUTATED 0 0 0 3
ADH7 WILD-TYPE 46 58 64 40

Figure S3697.  Get High-res Image Gene #1339: 'ADH7 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'ADH7 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S14215.  Gene #1339: 'ADH7 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ADH7 MUTATED 1 1 1
ADH7 WILD-TYPE 50 82 76
'ADH7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.022 (Fisher's exact test), Q value = 0.15

Table S14216.  Gene #1339: 'ADH7 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ADH7 MUTATED 6 0 0 0
ADH7 WILD-TYPE 172 183 101 20

Figure S3698.  Get High-res Image Gene #1339: 'ADH7 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ADH7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S14217.  Gene #1339: 'ADH7 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ADH7 MUTATED 1 1 2
ADH7 WILD-TYPE 86 79 98
'ADH7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0643 (Fisher's exact test), Q value = 0.28

Table S14218.  Gene #1339: 'ADH7 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ADH7 MUTATED 0 6 1
ADH7 WILD-TYPE 89 154 137
'ADH7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.777 (Fisher's exact test), Q value = 1

Table S14219.  Gene #1339: 'ADH7 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ADH7 MUTATED 3 2 2
ADH7 WILD-TYPE 179 131 70
'ADH7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.312 (Fisher's exact test), Q value = 0.64

Table S14220.  Gene #1339: 'ADH7 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ADH7 MUTATED 2 3 0 2
ADH7 WILD-TYPE 110 93 92 184
'ADH7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.184 (Fisher's exact test), Q value = 0.48

Table S14221.  Gene #1339: 'ADH7 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ADH7 MUTATED 2 1 1 0 0 0 3
ADH7 WILD-TYPE 58 49 48 40 63 125 96
'ADH7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.902 (Fisher's exact test), Q value = 1

Table S14222.  Gene #1339: 'ADH7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ADH7 MUTATED 2 1 0 4
ADH7 WILD-TYPE 128 77 68 192
'ADH7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.185 (Fisher's exact test), Q value = 0.49

Table S14223.  Gene #1339: 'ADH7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ADH7 MUTATED 0 1 2 0 1 2 0 0 1
ADH7 WILD-TYPE 40 61 26 80 68 46 43 28 73
'RYR2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0568 (Fisher's exact test), Q value = 0.26

Table S14224.  Gene #1340: 'RYR2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
RYR2 MUTATED 11 6 4 6
RYR2 WILD-TYPE 35 52 60 37
'RYR2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0202 (Fisher's exact test), Q value = 0.14

Table S14225.  Gene #1340: 'RYR2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
RYR2 MUTATED 12 10 5
RYR2 WILD-TYPE 39 73 72

Figure S3699.  Get High-res Image Gene #1340: 'RYR2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'RYR2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00064 (Fisher's exact test), Q value = 0.018

Table S14226.  Gene #1340: 'RYR2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
RYR2 MUTATED 54 23 21 4
RYR2 WILD-TYPE 124 160 80 16

Figure S3700.  Get High-res Image Gene #1340: 'RYR2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'RYR2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.13 (Fisher's exact test), Q value = 0.4

Table S14227.  Gene #1340: 'RYR2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
RYR2 MUTATED 20 19 35
RYR2 WILD-TYPE 67 61 65
'RYR2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0121 (Fisher's exact test), Q value = 0.11

Table S14228.  Gene #1340: 'RYR2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
RYR2 MUTATED 15 26 41
RYR2 WILD-TYPE 74 134 97

Figure S3701.  Get High-res Image Gene #1340: 'RYR2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'RYR2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.524 (Fisher's exact test), Q value = 0.85

Table S14229.  Gene #1340: 'RYR2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
RYR2 MUTATED 41 24 17
RYR2 WILD-TYPE 141 109 55
'RYR2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0169 (Fisher's exact test), Q value = 0.13

Table S14230.  Gene #1340: 'RYR2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
RYR2 MUTATED 22 32 19 31
RYR2 WILD-TYPE 90 64 73 155

Figure S3702.  Get High-res Image Gene #1340: 'RYR2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'RYR2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 4e-05 (Fisher's exact test), Q value = 0.0027

Table S14231.  Gene #1340: 'RYR2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
RYR2 MUTATED 13 15 20 14 10 11 21
RYR2 WILD-TYPE 47 35 29 26 53 114 78

Figure S3703.  Get High-res Image Gene #1340: 'RYR2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'RYR2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0248 (Fisher's exact test), Q value = 0.16

Table S14232.  Gene #1340: 'RYR2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
RYR2 MUTATED 35 12 21 34
RYR2 WILD-TYPE 95 66 47 162

Figure S3704.  Get High-res Image Gene #1340: 'RYR2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'RYR2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0509 (Fisher's exact test), Q value = 0.24

Table S14233.  Gene #1340: 'RYR2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
RYR2 MUTATED 10 13 7 14 23 5 14 4 12
RYR2 WILD-TYPE 30 49 21 66 46 43 29 24 62
'RYR2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.348 (Fisher's exact test), Q value = 0.68

Table S14234.  Gene #1340: 'RYR2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
RYR2 MUTATED 10 7 9 9
RYR2 WILD-TYPE 23 24 18 10
'RYR2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.376 (Fisher's exact test), Q value = 0.71

Table S14235.  Gene #1340: 'RYR2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
RYR2 MUTATED 15 2 11 7
RYR2 WILD-TYPE 39 8 13 15
'DACT1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0734 (Fisher's exact test), Q value = 0.29

Table S14236.  Gene #1341: 'DACT1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
DACT1 MUTATED 2 0 0 2
DACT1 WILD-TYPE 44 58 64 41
'DACT1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.556 (Fisher's exact test), Q value = 0.87

Table S14237.  Gene #1341: 'DACT1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
DACT1 MUTATED 2 1 1
DACT1 WILD-TYPE 49 82 76
'DACT1 MUTATION STATUS' versus 'CN_CNMF'

P value = 4e-04 (Fisher's exact test), Q value = 0.013

Table S14238.  Gene #1341: 'DACT1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
DACT1 MUTATED 13 0 2 0
DACT1 WILD-TYPE 165 183 99 20

Figure S3705.  Get High-res Image Gene #1341: 'DACT1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'DACT1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0654 (Fisher's exact test), Q value = 0.28

Table S14239.  Gene #1341: 'DACT1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
DACT1 MUTATED 4 0 6
DACT1 WILD-TYPE 83 80 94
'DACT1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.281 (Fisher's exact test), Q value = 0.61

Table S14240.  Gene #1341: 'DACT1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
DACT1 MUTATED 4 3 7
DACT1 WILD-TYPE 85 157 131
'DACT1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.823 (Fisher's exact test), Q value = 1

Table S14241.  Gene #1341: 'DACT1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
DACT1 MUTATED 6 6 2
DACT1 WILD-TYPE 176 127 70
'DACT1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0213 (Fisher's exact test), Q value = 0.15

Table S14242.  Gene #1341: 'DACT1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
DACT1 MUTATED 0 5 6 5
DACT1 WILD-TYPE 112 91 86 181

Figure S3706.  Get High-res Image Gene #1341: 'DACT1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'DACT1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00786 (Fisher's exact test), Q value = 0.083

Table S14243.  Gene #1341: 'DACT1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
DACT1 MUTATED 1 1 7 1 2 1 3
DACT1 WILD-TYPE 59 49 42 39 61 124 96

Figure S3707.  Get High-res Image Gene #1341: 'DACT1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'DACT1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.348 (Fisher's exact test), Q value = 0.68

Table S14244.  Gene #1341: 'DACT1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
DACT1 MUTATED 4 2 0 9
DACT1 WILD-TYPE 126 76 68 187
'DACT1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0853 (Fisher's exact test), Q value = 0.32

Table S14245.  Gene #1341: 'DACT1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
DACT1 MUTATED 1 3 1 3 6 0 0 1 0
DACT1 WILD-TYPE 39 59 27 77 63 48 43 27 74
'TMC8 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0606 (Fisher's exact test), Q value = 0.27

Table S14246.  Gene #1342: 'TMC8 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
TMC8 MUTATED 6 0 1 0
TMC8 WILD-TYPE 172 183 100 20
'TMC8 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.288 (Fisher's exact test), Q value = 0.62

Table S14247.  Gene #1342: 'TMC8 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
TMC8 MUTATED 3 0 3
TMC8 WILD-TYPE 84 80 97
'TMC8 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.544 (Fisher's exact test), Q value = 0.86

Table S14248.  Gene #1342: 'TMC8 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
TMC8 MUTATED 1 1 3
TMC8 WILD-TYPE 88 159 135
'TMC8 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.851 (Fisher's exact test), Q value = 1

Table S14249.  Gene #1342: 'TMC8 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
TMC8 MUTATED 3 1 1
TMC8 WILD-TYPE 179 132 71
'TMC8 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.168 (Fisher's exact test), Q value = 0.46

Table S14250.  Gene #1342: 'TMC8 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
TMC8 MUTATED 0 2 3 2
TMC8 WILD-TYPE 112 94 89 184
'TMC8 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00603 (Fisher's exact test), Q value = 0.071

Table S14251.  Gene #1342: 'TMC8 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
TMC8 MUTATED 0 1 4 0 0 0 2
TMC8 WILD-TYPE 60 49 45 40 63 125 97

Figure S3708.  Get High-res Image Gene #1342: 'TMC8 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'TMC8 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.322 (Fisher's exact test), Q value = 0.65

Table S14252.  Gene #1342: 'TMC8 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
TMC8 MUTATED 4 0 0 3
TMC8 WILD-TYPE 126 78 68 193
'TMC8 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.202 (Fisher's exact test), Q value = 0.51

Table S14253.  Gene #1342: 'TMC8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
TMC8 MUTATED 0 3 0 0 3 0 0 0 1
TMC8 WILD-TYPE 40 59 28 80 66 48 43 28 73
'SULF2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0339 (Fisher's exact test), Q value = 0.19

Table S14254.  Gene #1343: 'SULF2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
SULF2 MUTATED 2 1 0 4
SULF2 WILD-TYPE 44 57 64 39

Figure S3709.  Get High-res Image Gene #1343: 'SULF2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'SULF2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.107 (Fisher's exact test), Q value = 0.36

Table S14255.  Gene #1343: 'SULF2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
SULF2 MUTATED 4 1 2
SULF2 WILD-TYPE 47 82 75
'SULF2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.135 (Fisher's exact test), Q value = 0.41

Table S14256.  Gene #1343: 'SULF2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
SULF2 MUTATED 14 5 5 0
SULF2 WILD-TYPE 164 178 96 20
'SULF2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.457 (Fisher's exact test), Q value = 0.78

Table S14257.  Gene #1343: 'SULF2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
SULF2 MUTATED 7 3 8
SULF2 WILD-TYPE 80 77 92
'SULF2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.204 (Fisher's exact test), Q value = 0.51

Table S14258.  Gene #1343: 'SULF2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
SULF2 MUTATED 2 9 11
SULF2 WILD-TYPE 87 151 127
'SULF2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.439 (Fisher's exact test), Q value = 0.77

Table S14259.  Gene #1343: 'SULF2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
SULF2 MUTATED 13 5 4
SULF2 WILD-TYPE 169 128 68
'SULF2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.108 (Fisher's exact test), Q value = 0.36

Table S14260.  Gene #1343: 'SULF2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
SULF2 MUTATED 5 7 8 5
SULF2 WILD-TYPE 107 89 84 181
'SULF2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0431 (Fisher's exact test), Q value = 0.22

Table S14261.  Gene #1343: 'SULF2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
SULF2 MUTATED 5 3 6 3 1 2 5
SULF2 WILD-TYPE 55 47 43 37 62 123 94

Figure S3710.  Get High-res Image Gene #1343: 'SULF2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'SULF2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.272 (Fisher's exact test), Q value = 0.6

Table S14262.  Gene #1343: 'SULF2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
SULF2 MUTATED 10 4 4 6
SULF2 WILD-TYPE 120 74 64 190
'SULF2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0296 (Fisher's exact test), Q value = 0.18

Table S14263.  Gene #1343: 'SULF2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
SULF2 MUTATED 4 6 2 1 4 2 4 1 0
SULF2 WILD-TYPE 36 56 26 79 65 46 39 27 74

Figure S3711.  Get High-res Image Gene #1343: 'SULF2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'SULF2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.143 (Fisher's exact test), Q value = 0.42

Table S14264.  Gene #1343: 'SULF2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
SULF2 MUTATED 2 0 2 3
SULF2 WILD-TYPE 31 31 25 16
'SULF2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.779 (Fisher's exact test), Q value = 1

Table S14265.  Gene #1343: 'SULF2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
SULF2 MUTATED 3 0 2 2
SULF2 WILD-TYPE 51 10 22 20
'AIM2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0179 (Fisher's exact test), Q value = 0.13

Table S14266.  Gene #1344: 'AIM2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
AIM2 MUTATED 7 1 0 1
AIM2 WILD-TYPE 171 182 101 19

Figure S3712.  Get High-res Image Gene #1344: 'AIM2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'AIM2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0792 (Fisher's exact test), Q value = 0.3

Table S14267.  Gene #1344: 'AIM2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
AIM2 MUTATED 5 0 3
AIM2 WILD-TYPE 82 80 97
'AIM2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.175 (Fisher's exact test), Q value = 0.47

Table S14268.  Gene #1344: 'AIM2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
AIM2 MUTATED 0 3 5
AIM2 WILD-TYPE 89 157 133
'AIM2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0584 (Fisher's exact test), Q value = 0.26

Table S14269.  Gene #1344: 'AIM2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
AIM2 MUTATED 2 6 0
AIM2 WILD-TYPE 180 127 72
'AIM2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.26 (Fisher's exact test), Q value = 0.58

Table S14270.  Gene #1344: 'AIM2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
AIM2 MUTATED 1 4 2 2
AIM2 WILD-TYPE 111 92 90 184
'AIM2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0163 (Fisher's exact test), Q value = 0.13

Table S14271.  Gene #1344: 'AIM2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
AIM2 MUTATED 1 3 3 0 0 0 2
AIM2 WILD-TYPE 59 47 46 40 63 125 97

Figure S3713.  Get High-res Image Gene #1344: 'AIM2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'AIM2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.695 (Fisher's exact test), Q value = 0.97

Table S14272.  Gene #1344: 'AIM2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
AIM2 MUTATED 2 2 0 5
AIM2 WILD-TYPE 128 76 68 191
'AIM2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.178 (Fisher's exact test), Q value = 0.48

Table S14273.  Gene #1344: 'AIM2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
AIM2 MUTATED 0 1 3 2 1 0 0 0 2
AIM2 WILD-TYPE 40 61 25 78 68 48 43 28 72
'SPAG7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.663 (Fisher's exact test), Q value = 0.95

Table S14274.  Gene #1345: 'SPAG7 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
SPAG7 MUTATED 2 1 0 0
SPAG7 WILD-TYPE 176 182 101 20
'SPAG7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.641 (Fisher's exact test), Q value = 0.93

Table S14275.  Gene #1345: 'SPAG7 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
SPAG7 MUTATED 0 1 2
SPAG7 WILD-TYPE 87 79 98
'SPAG7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.453 (Fisher's exact test), Q value = 0.78

Table S14276.  Gene #1345: 'SPAG7 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
SPAG7 MUTATED 1 2 0
SPAG7 WILD-TYPE 88 158 138
'SPAG7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.59 (Fisher's exact test), Q value = 0.89

Table S14277.  Gene #1345: 'SPAG7 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
SPAG7 MUTATED 1 2 0
SPAG7 WILD-TYPE 181 131 72
'SPAG7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.12 (Fisher's exact test), Q value = 0.39

Table S14278.  Gene #1345: 'SPAG7 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
SPAG7 MUTATED 1 2 0 0
SPAG7 WILD-TYPE 111 94 92 186
'SPAG7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.149 (Fisher's exact test), Q value = 0.43

Table S14279.  Gene #1345: 'SPAG7 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
SPAG7 MUTATED 1 1 1 0 0 0 0
SPAG7 WILD-TYPE 59 49 48 40 63 125 99
'SPAG7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0658 (Fisher's exact test), Q value = 0.28

Table S14280.  Gene #1345: 'SPAG7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
SPAG7 MUTATED 3 0 0 0
SPAG7 WILD-TYPE 127 78 68 196
'SPAG7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.804 (Fisher's exact test), Q value = 1

Table S14281.  Gene #1345: 'SPAG7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
SPAG7 MUTATED 1 0 0 1 1 0 0 0 0
SPAG7 WILD-TYPE 39 62 28 79 68 48 43 28 74
'WDR75 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.179 (Fisher's exact test), Q value = 0.48

Table S14282.  Gene #1346: 'WDR75 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
WDR75 MUTATED 3 0 1 1
WDR75 WILD-TYPE 43 58 63 42
'WDR75 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0896 (Fisher's exact test), Q value = 0.33

Table S14283.  Gene #1346: 'WDR75 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
WDR75 MUTATED 3 2 0
WDR75 WILD-TYPE 48 81 77
'WDR75 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.113 (Fisher's exact test), Q value = 0.37

Table S14284.  Gene #1346: 'WDR75 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
WDR75 MUTATED 5 2 0 1
WDR75 WILD-TYPE 173 181 101 19
'WDR75 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.111 (Fisher's exact test), Q value = 0.37

Table S14285.  Gene #1346: 'WDR75 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
WDR75 MUTATED 0 0 3
WDR75 WILD-TYPE 87 80 97
'WDR75 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.285 (Fisher's exact test), Q value = 0.61

Table S14286.  Gene #1346: 'WDR75 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
WDR75 MUTATED 3 2 1
WDR75 WILD-TYPE 86 158 137
'WDR75 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S14287.  Gene #1346: 'WDR75 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
WDR75 MUTATED 3 2 1
WDR75 WILD-TYPE 179 131 71
'WDR75 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.39 (Fisher's exact test), Q value = 0.72

Table S14288.  Gene #1346: 'WDR75 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
WDR75 MUTATED 1 0 2 5
WDR75 WILD-TYPE 111 96 90 181
'WDR75 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.708 (Fisher's exact test), Q value = 0.98

Table S14289.  Gene #1346: 'WDR75 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
WDR75 MUTATED 0 0 1 0 2 2 3
WDR75 WILD-TYPE 60 50 48 40 61 123 96
'WDR75 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.604 (Fisher's exact test), Q value = 0.91

Table S14290.  Gene #1346: 'WDR75 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
WDR75 MUTATED 1 2 0 3
WDR75 WILD-TYPE 129 76 68 193
'WDR75 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.88 (Fisher's exact test), Q value = 1

Table S14291.  Gene #1346: 'WDR75 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
WDR75 MUTATED 0 1 0 1 2 0 0 1 1
WDR75 WILD-TYPE 40 61 28 79 67 48 43 27 73
'CPN2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0501 (Fisher's exact test), Q value = 0.24

Table S14292.  Gene #1347: 'CPN2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
CPN2 MUTATED 7 2 0 1
CPN2 WILD-TYPE 171 181 101 19
'CPN2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.64 (Fisher's exact test), Q value = 0.93

Table S14293.  Gene #1347: 'CPN2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
CPN2 MUTATED 4 3 2
CPN2 WILD-TYPE 83 77 98
'CPN2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.176 (Fisher's exact test), Q value = 0.48

Table S14294.  Gene #1347: 'CPN2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
CPN2 MUTATED 0 3 5
CPN2 WILD-TYPE 89 157 133
'CPN2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.641 (Fisher's exact test), Q value = 0.93

Table S14295.  Gene #1347: 'CPN2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
CPN2 MUTATED 3 4 1
CPN2 WILD-TYPE 179 129 71
'CPN2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.195 (Fisher's exact test), Q value = 0.5

Table S14296.  Gene #1347: 'CPN2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
CPN2 MUTATED 3 3 3 1
CPN2 WILD-TYPE 109 93 89 185
'CPN2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0164 (Fisher's exact test), Q value = 0.13

Table S14297.  Gene #1347: 'CPN2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
CPN2 MUTATED 1 2 4 0 2 0 1
CPN2 WILD-TYPE 59 48 45 40 61 125 98

Figure S3714.  Get High-res Image Gene #1347: 'CPN2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CPN2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.316 (Fisher's exact test), Q value = 0.64

Table S14298.  Gene #1347: 'CPN2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
CPN2 MUTATED 4 3 1 2
CPN2 WILD-TYPE 126 75 67 194
'CPN2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.581 (Fisher's exact test), Q value = 0.89

Table S14299.  Gene #1347: 'CPN2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
CPN2 MUTATED 0 3 1 1 3 0 1 0 1
CPN2 WILD-TYPE 40 59 27 79 66 48 42 28 73
'CPN2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.507 (Fisher's exact test), Q value = 0.83

Table S14300.  Gene #1347: 'CPN2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
CPN2 MUTATED 0 2 1 1
CPN2 WILD-TYPE 33 29 26 18
'CPN2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0742 (Fisher's exact test), Q value = 0.29

Table S14301.  Gene #1347: 'CPN2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
CPN2 MUTATED 0 1 2 1
CPN2 WILD-TYPE 54 9 22 21
'NFKBIB MUTATION STATUS' versus 'CN_CNMF'

P value = 0.71 (Fisher's exact test), Q value = 0.98

Table S14302.  Gene #1348: 'NFKBIB MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
NFKBIB MUTATED 2 3 0 0
NFKBIB WILD-TYPE 176 180 101 20
'NFKBIB MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.689 (Fisher's exact test), Q value = 0.97

Table S14303.  Gene #1348: 'NFKBIB MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
NFKBIB MUTATED 1 2 1
NFKBIB WILD-TYPE 86 78 99
'NFKBIB MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.361 (Fisher's exact test), Q value = 0.69

Table S14304.  Gene #1348: 'NFKBIB MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
NFKBIB MUTATED 0 1 3
NFKBIB WILD-TYPE 89 159 135
'NFKBIB MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.67 (Fisher's exact test), Q value = 0.95

Table S14305.  Gene #1348: 'NFKBIB MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
NFKBIB MUTATED 3 1 0
NFKBIB WILD-TYPE 179 132 72
'NFKBIB MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.776 (Fisher's exact test), Q value = 1

Table S14306.  Gene #1348: 'NFKBIB MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
NFKBIB MUTATED 2 1 1 1
NFKBIB WILD-TYPE 110 95 91 185
'NFKBIB MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.428 (Fisher's exact test), Q value = 0.76

Table S14307.  Gene #1348: 'NFKBIB MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
NFKBIB MUTATED 0 1 1 1 1 1 0
NFKBIB WILD-TYPE 60 49 48 39 62 124 99
'NFKBIB MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.232 (Fisher's exact test), Q value = 0.55

Table S14308.  Gene #1348: 'NFKBIB MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
NFKBIB MUTATED 0 2 1 2
NFKBIB WILD-TYPE 130 76 67 194
'NFKBIB MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.524 (Fisher's exact test), Q value = 0.85

Table S14309.  Gene #1348: 'NFKBIB MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
NFKBIB MUTATED 0 2 0 0 1 1 1 0 0
NFKBIB WILD-TYPE 40 60 28 80 68 47 42 28 74
'NFKBIB MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.703 (Fisher's exact test), Q value = 0.97

Table S14310.  Gene #1348: 'NFKBIB MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
NFKBIB MUTATED 2 1 0 0
NFKBIB WILD-TYPE 31 30 27 19
'NFKBIB MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.196 (Fisher's exact test), Q value = 0.5

Table S14311.  Gene #1348: 'NFKBIB MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
NFKBIB MUTATED 1 1 0 1
NFKBIB WILD-TYPE 53 9 24 21
'ATRX MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.163 (Fisher's exact test), Q value = 0.46

Table S14312.  Gene #1349: 'ATRX MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ATRX MUTATED 3 2 0 1
ATRX WILD-TYPE 43 56 64 42
'ATRX MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0227 (Fisher's exact test), Q value = 0.15

Table S14313.  Gene #1349: 'ATRX MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ATRX MUTATED 4 2 0
ATRX WILD-TYPE 47 81 77

Figure S3715.  Get High-res Image Gene #1349: 'ATRX MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'ATRX MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00423 (Fisher's exact test), Q value = 0.059

Table S14314.  Gene #1349: 'ATRX MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ATRX MUTATED 21 5 4 1
ATRX WILD-TYPE 157 178 97 19

Figure S3716.  Get High-res Image Gene #1349: 'ATRX MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ATRX MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.374 (Fisher's exact test), Q value = 0.7

Table S14315.  Gene #1349: 'ATRX MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ATRX MUTATED 8 6 14
ATRX WILD-TYPE 79 74 86
'ATRX MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.262 (Fisher's exact test), Q value = 0.59

Table S14316.  Gene #1349: 'ATRX MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ATRX MUTATED 4 10 14
ATRX WILD-TYPE 85 150 124
'ATRX MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.328 (Fisher's exact test), Q value = 0.66

Table S14317.  Gene #1349: 'ATRX MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ATRX MUTATED 17 8 3
ATRX WILD-TYPE 165 125 69
'ATRX MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.028 (Fisher's exact test), Q value = 0.17

Table S14318.  Gene #1349: 'ATRX MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ATRX MUTATED 7 9 11 6
ATRX WILD-TYPE 105 87 81 180

Figure S3717.  Get High-res Image Gene #1349: 'ATRX MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'ATRX MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00182 (Fisher's exact test), Q value = 0.035

Table S14319.  Gene #1349: 'ATRX MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ATRX MUTATED 3 3 10 2 7 2 6
ATRX WILD-TYPE 57 47 39 38 56 123 93

Figure S3718.  Get High-res Image Gene #1349: 'ATRX MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ATRX MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0805 (Fisher's exact test), Q value = 0.31

Table S14320.  Gene #1349: 'ATRX MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ATRX MUTATED 11 9 1 12
ATRX WILD-TYPE 119 69 67 184
'ATRX MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0128 (Fisher's exact test), Q value = 0.11

Table S14321.  Gene #1349: 'ATRX MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ATRX MUTATED 3 10 2 5 9 1 0 1 2
ATRX WILD-TYPE 37 52 26 75 60 47 43 27 72

Figure S3719.  Get High-res Image Gene #1349: 'ATRX MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'ATRX MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.932 (Fisher's exact test), Q value = 1

Table S14322.  Gene #1349: 'ATRX MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
ATRX MUTATED 2 3 2 2
ATRX WILD-TYPE 31 28 25 17
'ATRX MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.834 (Fisher's exact test), Q value = 1

Table S14323.  Gene #1349: 'ATRX MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
ATRX MUTATED 6 0 2 1
ATRX WILD-TYPE 48 10 22 21
'TTC24 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.105 (Fisher's exact test), Q value = 0.36

Table S14324.  Gene #1350: 'TTC24 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
TTC24 MUTATED 6 1 0 0
TTC24 WILD-TYPE 172 182 101 20
'TTC24 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.632 (Fisher's exact test), Q value = 0.93

Table S14325.  Gene #1350: 'TTC24 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
TTC24 MUTATED 1 1 3
TTC24 WILD-TYPE 86 79 97
'TTC24 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.618 (Fisher's exact test), Q value = 0.92

Table S14326.  Gene #1350: 'TTC24 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
TTC24 MUTATED 1 2 4
TTC24 WILD-TYPE 88 158 134
'TTC24 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.221 (Fisher's exact test), Q value = 0.54

Table S14327.  Gene #1350: 'TTC24 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
TTC24 MUTATED 3 1 3
TTC24 WILD-TYPE 179 132 69
'TTC24 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.76 (Fisher's exact test), Q value = 1

Table S14328.  Gene #1350: 'TTC24 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
TTC24 MUTATED 1 2 2 2
TTC24 WILD-TYPE 111 94 90 184
'TTC24 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0594 (Fisher's exact test), Q value = 0.27

Table S14329.  Gene #1350: 'TTC24 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
TTC24 MUTATED 1 1 3 0 0 0 2
TTC24 WILD-TYPE 59 49 46 40 63 125 97
'TTC24 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.662 (Fisher's exact test), Q value = 0.95

Table S14330.  Gene #1350: 'TTC24 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
TTC24 MUTATED 3 0 1 3
TTC24 WILD-TYPE 127 78 67 193
'TTC24 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0981 (Fisher's exact test), Q value = 0.34

Table S14331.  Gene #1350: 'TTC24 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
TTC24 MUTATED 0 1 1 0 3 0 2 0 0
TTC24 WILD-TYPE 40 61 27 80 66 48 41 28 74
'TTC24 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0607 (Fisher's exact test), Q value = 0.27

Table S14332.  Gene #1350: 'TTC24 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
TTC24 MUTATED 0 0 1 2
TTC24 WILD-TYPE 33 31 26 17
'TTC24 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S14333.  Gene #1350: 'TTC24 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
TTC24 MUTATED 2 0 1 0
TTC24 WILD-TYPE 52 10 23 22
'ARMC9 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00775 (Fisher's exact test), Q value = 0.082

Table S14334.  Gene #1351: 'ARMC9 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ARMC9 MUTATED 0 0 0 3
ARMC9 WILD-TYPE 46 58 64 40

Figure S3720.  Get High-res Image Gene #1351: 'ARMC9 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'ARMC9 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.183 (Fisher's exact test), Q value = 0.48

Table S14335.  Gene #1351: 'ARMC9 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ARMC9 MUTATED 2 0 1
ARMC9 WILD-TYPE 49 83 76
'ARMC9 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.205 (Fisher's exact test), Q value = 0.51

Table S14336.  Gene #1351: 'ARMC9 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ARMC9 MUTATED 6 1 1 0
ARMC9 WILD-TYPE 172 182 100 20
'ARMC9 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.631 (Fisher's exact test), Q value = 0.93

Table S14337.  Gene #1351: 'ARMC9 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ARMC9 MUTATED 1 1 3
ARMC9 WILD-TYPE 86 79 97
'ARMC9 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.241 (Fisher's exact test), Q value = 0.56

Table S14338.  Gene #1351: 'ARMC9 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ARMC9 MUTATED 0 2 4
ARMC9 WILD-TYPE 89 158 134
'ARMC9 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.338 (Fisher's exact test), Q value = 0.67

Table S14339.  Gene #1351: 'ARMC9 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ARMC9 MUTATED 5 1 0
ARMC9 WILD-TYPE 177 132 72
'ARMC9 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.673 (Fisher's exact test), Q value = 0.95

Table S14340.  Gene #1351: 'ARMC9 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ARMC9 MUTATED 1 3 1 3
ARMC9 WILD-TYPE 111 93 91 183
'ARMC9 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0195 (Fisher's exact test), Q value = 0.14

Table S14341.  Gene #1351: 'ARMC9 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ARMC9 MUTATED 1 0 4 0 1 0 2
ARMC9 WILD-TYPE 59 50 45 40 62 125 97

Figure S3721.  Get High-res Image Gene #1351: 'ARMC9 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ARMC9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.384 (Fisher's exact test), Q value = 0.71

Table S14342.  Gene #1351: 'ARMC9 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ARMC9 MUTATED 4 1 0 2
ARMC9 WILD-TYPE 126 77 68 194
'ARMC9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0285 (Fisher's exact test), Q value = 0.17

Table S14343.  Gene #1351: 'ARMC9 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ARMC9 MUTATED 0 3 0 0 4 0 0 0 0
ARMC9 WILD-TYPE 40 59 28 80 65 48 43 28 74

Figure S3722.  Get High-res Image Gene #1351: 'ARMC9 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'SNAPC1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0154 (Fisher's exact test), Q value = 0.12

Table S14344.  Gene #1352: 'SNAPC1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
SNAPC1 MUTATED 1 0 0 3
SNAPC1 WILD-TYPE 45 58 64 40

Figure S3723.  Get High-res Image Gene #1352: 'SNAPC1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'SNAPC1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00294 (Fisher's exact test), Q value = 0.049

Table S14345.  Gene #1352: 'SNAPC1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
SNAPC1 MUTATED 4 0 0
SNAPC1 WILD-TYPE 47 83 77

Figure S3724.  Get High-res Image Gene #1352: 'SNAPC1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'SNAPC1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0604 (Fisher's exact test), Q value = 0.27

Table S14346.  Gene #1352: 'SNAPC1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
SNAPC1 MUTATED 6 0 1 0
SNAPC1 WILD-TYPE 172 183 100 20
'SNAPC1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.777 (Fisher's exact test), Q value = 1

Table S14347.  Gene #1352: 'SNAPC1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
SNAPC1 MUTATED 1 0 2
SNAPC1 WILD-TYPE 86 80 98
'SNAPC1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.492 (Fisher's exact test), Q value = 0.82

Table S14348.  Gene #1352: 'SNAPC1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
SNAPC1 MUTATED 3 2 2
SNAPC1 WILD-TYPE 86 158 136
'SNAPC1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.885 (Fisher's exact test), Q value = 1

Table S14349.  Gene #1352: 'SNAPC1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
SNAPC1 MUTATED 3 3 1
SNAPC1 WILD-TYPE 179 130 71
'SNAPC1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.457 (Fisher's exact test), Q value = 0.78

Table S14350.  Gene #1352: 'SNAPC1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
SNAPC1 MUTATED 0 2 2 3
SNAPC1 WILD-TYPE 112 94 90 183
'SNAPC1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0636 (Fisher's exact test), Q value = 0.27

Table S14351.  Gene #1352: 'SNAPC1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
SNAPC1 MUTATED 0 0 2 0 1 0 4
SNAPC1 WILD-TYPE 60 50 47 40 62 125 95
'SNAPC1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.885 (Fisher's exact test), Q value = 1

Table S14352.  Gene #1352: 'SNAPC1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
SNAPC1 MUTATED 2 1 0 3
SNAPC1 WILD-TYPE 128 77 68 193
'SNAPC1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0132 (Fisher's exact test), Q value = 0.11

Table S14353.  Gene #1352: 'SNAPC1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
SNAPC1 MUTATED 0 1 0 0 5 0 0 0 0
SNAPC1 WILD-TYPE 40 61 28 80 64 48 43 28 74

Figure S3725.  Get High-res Image Gene #1352: 'SNAPC1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'C20ORF151 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0317 (Fisher's exact test), Q value = 0.18

Table S14354.  Gene #1353: 'C20ORF151 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
C20ORF151 MUTATED 6 1 2 2
C20ORF151 WILD-TYPE 172 182 99 18

Figure S3726.  Get High-res Image Gene #1353: 'C20ORF151 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'C20ORF151 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.497 (Fisher's exact test), Q value = 0.82

Table S14355.  Gene #1353: 'C20ORF151 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
C20ORF151 MUTATED 4 1 3
C20ORF151 WILD-TYPE 83 79 97
'C20ORF151 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.927 (Fisher's exact test), Q value = 1

Table S14356.  Gene #1353: 'C20ORF151 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
C20ORF151 MUTATED 3 4 4
C20ORF151 WILD-TYPE 86 156 134
'C20ORF151 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S14357.  Gene #1353: 'C20ORF151 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
C20ORF151 MUTATED 5 4 2
C20ORF151 WILD-TYPE 177 129 70
'C20ORF151 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.324 (Fisher's exact test), Q value = 0.65

Table S14358.  Gene #1353: 'C20ORF151 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
C20ORF151 MUTATED 1 3 4 3
C20ORF151 WILD-TYPE 111 93 88 183
'C20ORF151 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.104 (Fisher's exact test), Q value = 0.36

Table S14359.  Gene #1353: 'C20ORF151 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
C20ORF151 MUTATED 1 0 4 2 1 2 1
C20ORF151 WILD-TYPE 59 50 45 38 62 123 98
'C20ORF151 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.297 (Fisher's exact test), Q value = 0.63

Table S14360.  Gene #1353: 'C20ORF151 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
C20ORF151 MUTATED 5 2 2 2
C20ORF151 WILD-TYPE 125 76 66 194
'C20ORF151 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.301 (Fisher's exact test), Q value = 0.63

Table S14361.  Gene #1353: 'C20ORF151 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
C20ORF151 MUTATED 3 2 0 0 2 2 1 0 1
C20ORF151 WILD-TYPE 37 60 28 80 67 46 42 28 73
'C20ORF151 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.39 (Fisher's exact test), Q value = 0.72

Table S14362.  Gene #1353: 'C20ORF151 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
C20ORF151 MUTATED 3 0 1 1
C20ORF151 WILD-TYPE 30 31 26 18
'C20ORF151 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.891 (Fisher's exact test), Q value = 1

Table S14363.  Gene #1353: 'C20ORF151 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
C20ORF151 MUTATED 2 0 2 1
C20ORF151 WILD-TYPE 52 10 22 21
'DNAJC7 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0647 (Fisher's exact test), Q value = 0.28

Table S14364.  Gene #1354: 'DNAJC7 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
DNAJC7 MUTATED 1 0 0 2
DNAJC7 WILD-TYPE 45 58 64 41
'DNAJC7 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S14365.  Gene #1354: 'DNAJC7 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
DNAJC7 MUTATED 1 1 1
DNAJC7 WILD-TYPE 50 82 76
'DNAJC7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00469 (Fisher's exact test), Q value = 0.062

Table S14366.  Gene #1354: 'DNAJC7 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
DNAJC7 MUTATED 8 0 0 0
DNAJC7 WILD-TYPE 170 183 101 20

Figure S3727.  Get High-res Image Gene #1354: 'DNAJC7 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'DNAJC7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.197 (Fisher's exact test), Q value = 0.5

Table S14367.  Gene #1354: 'DNAJC7 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
DNAJC7 MUTATED 1 0 4
DNAJC7 WILD-TYPE 86 80 96
'DNAJC7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.436 (Fisher's exact test), Q value = 0.76

Table S14368.  Gene #1354: 'DNAJC7 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
DNAJC7 MUTATED 0 4 3
DNAJC7 WILD-TYPE 89 156 135
'DNAJC7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.68 (Fisher's exact test), Q value = 0.96

Table S14369.  Gene #1354: 'DNAJC7 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
DNAJC7 MUTATED 4 3 0
DNAJC7 WILD-TYPE 178 130 72
'DNAJC7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.272 (Fisher's exact test), Q value = 0.6

Table S14370.  Gene #1354: 'DNAJC7 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
DNAJC7 MUTATED 0 2 3 3
DNAJC7 WILD-TYPE 112 94 89 183
'DNAJC7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0194 (Fisher's exact test), Q value = 0.14

Table S14371.  Gene #1354: 'DNAJC7 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
DNAJC7 MUTATED 1 0 4 0 1 0 2
DNAJC7 WILD-TYPE 59 50 45 40 62 125 97

Figure S3728.  Get High-res Image Gene #1354: 'DNAJC7 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'DNAJC7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.844 (Fisher's exact test), Q value = 1

Table S14372.  Gene #1354: 'DNAJC7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
DNAJC7 MUTATED 3 1 0 4
DNAJC7 WILD-TYPE 127 77 68 192
'DNAJC7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.105 (Fisher's exact test), Q value = 0.36

Table S14373.  Gene #1354: 'DNAJC7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
DNAJC7 MUTATED 1 1 1 0 4 0 1 0 0
DNAJC7 WILD-TYPE 39 61 27 80 65 48 42 28 74
'NUP205 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.15 (Fisher's exact test), Q value = 0.43

Table S14374.  Gene #1355: 'NUP205 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
NUP205 MUTATED 3 1 1 4
NUP205 WILD-TYPE 43 57 63 39
'NUP205 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.174 (Fisher's exact test), Q value = 0.47

Table S14375.  Gene #1355: 'NUP205 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
NUP205 MUTATED 4 4 1
NUP205 WILD-TYPE 47 79 76
'NUP205 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00053 (Fisher's exact test), Q value = 0.016

Table S14376.  Gene #1355: 'NUP205 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
NUP205 MUTATED 20 3 3 0
NUP205 WILD-TYPE 158 180 98 20

Figure S3729.  Get High-res Image Gene #1355: 'NUP205 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'NUP205 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.108 (Fisher's exact test), Q value = 0.36

Table S14377.  Gene #1355: 'NUP205 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
NUP205 MUTATED 9 2 5
NUP205 WILD-TYPE 78 78 95
'NUP205 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.293 (Fisher's exact test), Q value = 0.62

Table S14378.  Gene #1355: 'NUP205 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
NUP205 MUTATED 3 6 10
NUP205 WILD-TYPE 86 154 128
'NUP205 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.678 (Fisher's exact test), Q value = 0.96

Table S14379.  Gene #1355: 'NUP205 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
NUP205 MUTATED 9 8 2
NUP205 WILD-TYPE 173 125 70
'NUP205 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0759 (Fisher's exact test), Q value = 0.3

Table S14380.  Gene #1355: 'NUP205 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
NUP205 MUTATED 2 6 9 9
NUP205 WILD-TYPE 110 90 83 177
'NUP205 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0331 (Fisher's exact test), Q value = 0.19

Table S14381.  Gene #1355: 'NUP205 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
NUP205 MUTATED 1 5 7 2 2 3 6
NUP205 WILD-TYPE 59 45 42 38 61 122 93

Figure S3730.  Get High-res Image Gene #1355: 'NUP205 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'NUP205 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.814 (Fisher's exact test), Q value = 1

Table S14382.  Gene #1355: 'NUP205 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
NUP205 MUTATED 7 5 2 12
NUP205 WILD-TYPE 123 73 66 184
'NUP205 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0238 (Fisher's exact test), Q value = 0.16

Table S14383.  Gene #1355: 'NUP205 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
NUP205 MUTATED 3 7 2 1 5 0 0 3 5
NUP205 WILD-TYPE 37 55 26 79 64 48 43 25 69

Figure S3731.  Get High-res Image Gene #1355: 'NUP205 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'NUP205 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.389 (Fisher's exact test), Q value = 0.72

Table S14384.  Gene #1355: 'NUP205 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
NUP205 MUTATED 2 1 0 2
NUP205 WILD-TYPE 31 30 27 17
'NUP205 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.268 (Fisher's exact test), Q value = 0.59

Table S14385.  Gene #1355: 'NUP205 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
NUP205 MUTATED 5 0 0 0
NUP205 WILD-TYPE 49 10 24 22
'TF MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00327 (Fisher's exact test), Q value = 0.051

Table S14386.  Gene #1356: 'TF MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
TF MUTATED 1 2 0 6
TF WILD-TYPE 45 56 64 37

Figure S3732.  Get High-res Image Gene #1356: 'TF MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'TF MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.339 (Fisher's exact test), Q value = 0.67

Table S14387.  Gene #1356: 'TF MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
TF MUTATED 4 2 3
TF WILD-TYPE 47 81 74
'TF MUTATION STATUS' versus 'CN_CNMF'

P value = 0.42 (Fisher's exact test), Q value = 0.75

Table S14388.  Gene #1356: 'TF MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
TF MUTATED 8 3 3 0
TF WILD-TYPE 170 180 98 20
'TF MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S14389.  Gene #1356: 'TF MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
TF MUTATED 2 1 2
TF WILD-TYPE 85 79 98
'TF MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.178 (Fisher's exact test), Q value = 0.48

Table S14390.  Gene #1356: 'TF MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
TF MUTATED 0 3 5
TF WILD-TYPE 89 157 133
'TF MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.509 (Fisher's exact test), Q value = 0.83

Table S14391.  Gene #1356: 'TF MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
TF MUTATED 4 4 0
TF WILD-TYPE 178 129 72
'TF MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.203 (Fisher's exact test), Q value = 0.51

Table S14392.  Gene #1356: 'TF MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
TF MUTATED 1 3 1 9
TF WILD-TYPE 111 93 91 177
'TF MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.28 (Fisher's exact test), Q value = 0.61

Table S14393.  Gene #1356: 'TF MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
TF MUTATED 3 1 1 1 0 2 6
TF WILD-TYPE 57 49 48 39 63 123 93
'TF MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.403 (Fisher's exact test), Q value = 0.73

Table S14394.  Gene #1356: 'TF MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
TF MUTATED 3 0 2 7
TF WILD-TYPE 127 78 66 189
'TF MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.185 (Fisher's exact test), Q value = 0.49

Table S14395.  Gene #1356: 'TF MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
TF MUTATED 0 0 3 3 2 1 0 1 2
TF WILD-TYPE 40 62 25 77 67 47 43 27 72
'LRRC37B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.883 (Fisher's exact test), Q value = 1

Table S14396.  Gene #1357: 'LRRC37B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
LRRC37B MUTATED 4 4 1 0
LRRC37B WILD-TYPE 174 179 100 20
'LRRC37B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.666 (Fisher's exact test), Q value = 0.95

Table S14397.  Gene #1357: 'LRRC37B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
LRRC37B MUTATED 4 2 2
LRRC37B WILD-TYPE 83 78 98
'LRRC37B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.196 (Fisher's exact test), Q value = 0.5

Table S14398.  Gene #1357: 'LRRC37B MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
LRRC37B MUTATED 0 5 2
LRRC37B WILD-TYPE 89 155 136
'LRRC37B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.885 (Fisher's exact test), Q value = 1

Table S14399.  Gene #1357: 'LRRC37B MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
LRRC37B MUTATED 3 3 1
LRRC37B WILD-TYPE 179 130 71
'LRRC37B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.189 (Fisher's exact test), Q value = 0.49

Table S14400.  Gene #1357: 'LRRC37B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
LRRC37B MUTATED 2 3 3 1
LRRC37B WILD-TYPE 110 93 89 185
'LRRC37B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0531 (Fisher's exact test), Q value = 0.25

Table S14401.  Gene #1357: 'LRRC37B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
LRRC37B MUTATED 3 1 0 1 3 0 1
LRRC37B WILD-TYPE 57 49 49 39 60 125 98
'LRRC37B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0285 (Fisher's exact test), Q value = 0.17

Table S14402.  Gene #1357: 'LRRC37B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
LRRC37B MUTATED 2 5 0 2
LRRC37B WILD-TYPE 128 73 68 194

Figure S3733.  Get High-res Image Gene #1357: 'LRRC37B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'LRRC37B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.785 (Fisher's exact test), Q value = 1

Table S14403.  Gene #1357: 'LRRC37B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
LRRC37B MUTATED 1 2 0 1 2 1 1 1 0
LRRC37B WILD-TYPE 39 60 28 79 67 47 42 27 74
'LRRC37B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.705 (Fisher's exact test), Q value = 0.98

Table S14404.  Gene #1357: 'LRRC37B MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
LRRC37B MUTATED 2 1 0 0
LRRC37B WILD-TYPE 31 30 27 19
'LRRC37B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.841 (Fisher's exact test), Q value = 1

Table S14405.  Gene #1357: 'LRRC37B MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
LRRC37B MUTATED 2 0 0 1
LRRC37B WILD-TYPE 52 10 24 21
'BCHE MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.026 (Fisher's exact test), Q value = 0.16

Table S14406.  Gene #1358: 'BCHE MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
BCHE MUTATED 5 3 0 1
BCHE WILD-TYPE 41 55 64 42

Figure S3734.  Get High-res Image Gene #1358: 'BCHE MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'BCHE MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0737 (Fisher's exact test), Q value = 0.29

Table S14407.  Gene #1358: 'BCHE MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
BCHE MUTATED 5 3 1
BCHE WILD-TYPE 46 80 76
'BCHE MUTATION STATUS' versus 'CN_CNMF'

P value = 0.142 (Fisher's exact test), Q value = 0.42

Table S14408.  Gene #1358: 'BCHE MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
BCHE MUTATED 15 10 2 1
BCHE WILD-TYPE 163 173 99 19
'BCHE MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.913 (Fisher's exact test), Q value = 1

Table S14409.  Gene #1358: 'BCHE MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
BCHE MUTATED 7 5 7
BCHE WILD-TYPE 80 75 93
'BCHE MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.568 (Fisher's exact test), Q value = 0.88

Table S14410.  Gene #1358: 'BCHE MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
BCHE MUTATED 4 9 11
BCHE WILD-TYPE 85 151 127
'BCHE MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.961 (Fisher's exact test), Q value = 1

Table S14411.  Gene #1358: 'BCHE MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
BCHE MUTATED 11 9 4
BCHE WILD-TYPE 171 124 68
'BCHE MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.722 (Fisher's exact test), Q value = 0.99

Table S14412.  Gene #1358: 'BCHE MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
BCHE MUTATED 6 7 7 9
BCHE WILD-TYPE 106 89 85 177
'BCHE MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0184 (Fisher's exact test), Q value = 0.14

Table S14413.  Gene #1358: 'BCHE MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
BCHE MUTATED 4 4 8 1 3 2 7
BCHE WILD-TYPE 56 46 41 39 60 123 92

Figure S3735.  Get High-res Image Gene #1358: 'BCHE MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'BCHE MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.733 (Fisher's exact test), Q value = 1

Table S14414.  Gene #1358: 'BCHE MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
BCHE MUTATED 9 5 2 12
BCHE WILD-TYPE 121 73 66 184
'BCHE MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0428 (Fisher's exact test), Q value = 0.22

Table S14415.  Gene #1358: 'BCHE MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
BCHE MUTATED 2 7 2 3 9 3 0 0 2
BCHE WILD-TYPE 38 55 26 77 60 45 43 28 72

Figure S3736.  Get High-res Image Gene #1358: 'BCHE MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'BCHE MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.965 (Fisher's exact test), Q value = 1

Table S14416.  Gene #1358: 'BCHE MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
BCHE MUTATED 3 2 2 2
BCHE WILD-TYPE 30 29 25 17
'BCHE MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.569 (Fisher's exact test), Q value = 0.88

Table S14417.  Gene #1358: 'BCHE MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
BCHE MUTATED 3 1 3 2
BCHE WILD-TYPE 51 9 21 20
'TRYX3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0915 (Fisher's exact test), Q value = 0.33

Table S14418.  Gene #1359: 'TRYX3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
TRYX3 MUTATED 4 0 3 0
TRYX3 WILD-TYPE 174 183 98 20
'TRYX3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.74 (Fisher's exact test), Q value = 1

Table S14419.  Gene #1359: 'TRYX3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
TRYX3 MUTATED 2 2 1
TRYX3 WILD-TYPE 85 78 99
'TRYX3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S14420.  Gene #1359: 'TRYX3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
TRYX3 MUTATED 1 2 2
TRYX3 WILD-TYPE 88 158 136
'TRYX3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S14421.  Gene #1359: 'TRYX3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
TRYX3 MUTATED 2 2 1
TRYX3 WILD-TYPE 180 131 71
'TRYX3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.568 (Fisher's exact test), Q value = 0.88

Table S14422.  Gene #1359: 'TRYX3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
TRYX3 MUTATED 1 1 3 2
TRYX3 WILD-TYPE 111 95 89 184
'TRYX3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0828 (Fisher's exact test), Q value = 0.31

Table S14423.  Gene #1359: 'TRYX3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
TRYX3 MUTATED 1 1 3 0 1 0 1
TRYX3 WILD-TYPE 59 49 46 40 62 125 98
'TRYX3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.268 (Fisher's exact test), Q value = 0.59

Table S14424.  Gene #1359: 'TRYX3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
TRYX3 MUTATED 2 3 0 2
TRYX3 WILD-TYPE 128 75 68 194
'TRYX3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.605 (Fisher's exact test), Q value = 0.91

Table S14425.  Gene #1359: 'TRYX3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
TRYX3 MUTATED 1 2 1 2 1 0 0 0 0
TRYX3 WILD-TYPE 39 60 27 78 68 48 43 28 74
'ZNF436 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.283 (Fisher's exact test), Q value = 0.61

Table S14426.  Gene #1360: 'ZNF436 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ZNF436 MUTATED 5 2 0 0
ZNF436 WILD-TYPE 173 181 101 20
'ZNF436 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.773 (Fisher's exact test), Q value = 1

Table S14427.  Gene #1360: 'ZNF436 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ZNF436 MUTATED 1 2 3
ZNF436 WILD-TYPE 86 78 97
'ZNF436 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.386 (Fisher's exact test), Q value = 0.71

Table S14428.  Gene #1360: 'ZNF436 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ZNF436 MUTATED 0 4 2
ZNF436 WILD-TYPE 89 156 136
'ZNF436 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.579 (Fisher's exact test), Q value = 0.88

Table S14429.  Gene #1360: 'ZNF436 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ZNF436 MUTATED 3 3 0
ZNF436 WILD-TYPE 179 130 72
'ZNF436 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.378 (Fisher's exact test), Q value = 0.71

Table S14430.  Gene #1360: 'ZNF436 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ZNF436 MUTATED 3 2 1 1
ZNF436 WILD-TYPE 109 94 91 185
'ZNF436 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.056 (Fisher's exact test), Q value = 0.26

Table S14431.  Gene #1360: 'ZNF436 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ZNF436 MUTATED 3 0 2 0 1 0 1
ZNF436 WILD-TYPE 57 50 47 40 62 125 98
'ZNF436 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0377 (Fisher's exact test), Q value = 0.2

Table S14432.  Gene #1360: 'ZNF436 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ZNF436 MUTATED 4 2 1 0
ZNF436 WILD-TYPE 126 76 67 196

Figure S3737.  Get High-res Image Gene #1360: 'ZNF436 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'ZNF436 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.114 (Fisher's exact test), Q value = 0.37

Table S14433.  Gene #1360: 'ZNF436 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ZNF436 MUTATED 1 2 0 0 0 1 2 1 0
ZNF436 WILD-TYPE 39 60 28 80 69 47 41 27 74
'A1CF MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.017 (Fisher's exact test), Q value = 0.13

Table S14434.  Gene #1361: 'A1CF MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
A1CF MUTATED 3 0 0 0
A1CF WILD-TYPE 43 58 64 43

Figure S3738.  Get High-res Image Gene #1361: 'A1CF MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'A1CF MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.252 (Fisher's exact test), Q value = 0.58

Table S14435.  Gene #1361: 'A1CF MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
A1CF MUTATED 2 1 0
A1CF WILD-TYPE 49 82 77
'A1CF MUTATION STATUS' versus 'CN_CNMF'

P value = 0.755 (Fisher's exact test), Q value = 1

Table S14436.  Gene #1361: 'A1CF MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
A1CF MUTATED 4 2 2 0
A1CF WILD-TYPE 174 181 99 20
'A1CF MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.595 (Fisher's exact test), Q value = 0.9

Table S14437.  Gene #1361: 'A1CF MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
A1CF MUTATED 1 3 2
A1CF WILD-TYPE 86 77 98
'A1CF MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.33 (Fisher's exact test), Q value = 0.66

Table S14438.  Gene #1361: 'A1CF MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
A1CF MUTATED 1 1 4
A1CF WILD-TYPE 88 159 134
'A1CF MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.116 (Fisher's exact test), Q value = 0.38

Table S14439.  Gene #1361: 'A1CF MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
A1CF MUTATED 4 0 2
A1CF WILD-TYPE 178 133 70
'A1CF MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.468 (Fisher's exact test), Q value = 0.79

Table S14440.  Gene #1361: 'A1CF MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
A1CF MUTATED 3 0 2 3
A1CF WILD-TYPE 109 96 90 183
'A1CF MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.643 (Fisher's exact test), Q value = 0.93

Table S14441.  Gene #1361: 'A1CF MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
A1CF MUTATED 2 1 0 0 2 1 2
A1CF WILD-TYPE 58 49 49 40 61 124 97
'A1CF MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.955 (Fisher's exact test), Q value = 1

Table S14442.  Gene #1361: 'A1CF MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
A1CF MUTATED 3 1 1 3
A1CF WILD-TYPE 127 77 67 193
'A1CF MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.489 (Fisher's exact test), Q value = 0.82

Table S14443.  Gene #1361: 'A1CF MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
A1CF MUTATED 1 1 0 4 1 0 1 0 0
A1CF WILD-TYPE 39 61 28 76 68 48 42 28 74
'TXLNG MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0271 (Fisher's exact test), Q value = 0.17

Table S14444.  Gene #1362: 'TXLNG MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
TXLNG MUTATED 3 0 0 2
TXLNG WILD-TYPE 43 58 64 41

Figure S3739.  Get High-res Image Gene #1362: 'TXLNG MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'TXLNG MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.253 (Fisher's exact test), Q value = 0.58

Table S14445.  Gene #1362: 'TXLNG MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
TXLNG MUTATED 3 1 1
TXLNG WILD-TYPE 48 82 76
'TXLNG MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00073 (Fisher's exact test), Q value = 0.02

Table S14446.  Gene #1362: 'TXLNG MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
TXLNG MUTATED 10 0 0 0
TXLNG WILD-TYPE 168 183 101 20

Figure S3740.  Get High-res Image Gene #1362: 'TXLNG MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'TXLNG MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.329 (Fisher's exact test), Q value = 0.66

Table S14447.  Gene #1362: 'TXLNG MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
TXLNG MUTATED 3 0 2
TXLNG WILD-TYPE 84 80 98
'TXLNG MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.277 (Fisher's exact test), Q value = 0.6

Table S14448.  Gene #1362: 'TXLNG MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
TXLNG MUTATED 0 5 3
TXLNG WILD-TYPE 89 155 135
'TXLNG MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0596 (Fisher's exact test), Q value = 0.27

Table S14449.  Gene #1362: 'TXLNG MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
TXLNG MUTATED 2 6 0
TXLNG WILD-TYPE 180 127 72
'TXLNG MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.113 (Fisher's exact test), Q value = 0.37

Table S14450.  Gene #1362: 'TXLNG MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
TXLNG MUTATED 0 4 1 5
TXLNG WILD-TYPE 112 92 91 181
'TXLNG MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.223 (Fisher's exact test), Q value = 0.54

Table S14451.  Gene #1362: 'TXLNG MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
TXLNG MUTATED 1 2 1 1 1 0 4
TXLNG WILD-TYPE 59 48 48 39 62 125 95
'TXLNG MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.584 (Fisher's exact test), Q value = 0.89

Table S14452.  Gene #1362: 'TXLNG MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
TXLNG MUTATED 1 1 1 6
TXLNG WILD-TYPE 129 77 67 190
'TXLNG MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.151 (Fisher's exact test), Q value = 0.44

Table S14453.  Gene #1362: 'TXLNG MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
TXLNG MUTATED 1 1 2 0 3 0 0 1 1
TXLNG WILD-TYPE 39 61 26 80 66 48 43 27 73
'P2RX7 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.629 (Fisher's exact test), Q value = 0.93

Table S14454.  Gene #1363: 'P2RX7 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
P2RX7 MUTATED 1 1 0 1
P2RX7 WILD-TYPE 45 57 64 42
'P2RX7 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S14455.  Gene #1363: 'P2RX7 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
P2RX7 MUTATED 1 1 1
P2RX7 WILD-TYPE 50 82 76
'P2RX7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.811 (Fisher's exact test), Q value = 1

Table S14456.  Gene #1363: 'P2RX7 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
P2RX7 MUTATED 5 4 4 0
P2RX7 WILD-TYPE 173 179 97 20
'P2RX7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.121 (Fisher's exact test), Q value = 0.39

Table S14457.  Gene #1363: 'P2RX7 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
P2RX7 MUTATED 2 1 7
P2RX7 WILD-TYPE 85 79 93
'P2RX7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.213 (Fisher's exact test), Q value = 0.52

Table S14458.  Gene #1363: 'P2RX7 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
P2RX7 MUTATED 0 4 5
P2RX7 WILD-TYPE 89 156 133
'P2RX7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.604 (Fisher's exact test), Q value = 0.91

Table S14459.  Gene #1363: 'P2RX7 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
P2RX7 MUTATED 6 2 1
P2RX7 WILD-TYPE 176 131 71
'P2RX7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0319 (Fisher's exact test), Q value = 0.18

Table S14460.  Gene #1363: 'P2RX7 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
P2RX7 MUTATED 2 4 5 1
P2RX7 WILD-TYPE 110 92 87 185

Figure S3741.  Get High-res Image Gene #1363: 'P2RX7 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'P2RX7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0729 (Fisher's exact test), Q value = 0.29

Table S14461.  Gene #1363: 'P2RX7 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
P2RX7 MUTATED 3 3 3 0 1 1 1
P2RX7 WILD-TYPE 57 47 46 40 62 124 98
'P2RX7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.144 (Fisher's exact test), Q value = 0.42

Table S14462.  Gene #1363: 'P2RX7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
P2RX7 MUTATED 7 1 0 5
P2RX7 WILD-TYPE 123 77 68 191
'P2RX7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.109 (Fisher's exact test), Q value = 0.36

Table S14463.  Gene #1363: 'P2RX7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
P2RX7 MUTATED 4 2 0 4 2 1 0 0 0
P2RX7 WILD-TYPE 36 60 28 76 67 47 43 28 74
'RCOR3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.178 (Fisher's exact test), Q value = 0.48

Table S14464.  Gene #1364: 'RCOR3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
RCOR3 MUTATED 3 0 1 1
RCOR3 WILD-TYPE 43 58 63 42
'RCOR3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.255 (Fisher's exact test), Q value = 0.58

Table S14465.  Gene #1364: 'RCOR3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
RCOR3 MUTATED 3 1 1
RCOR3 WILD-TYPE 48 82 76
'RCOR3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0455 (Fisher's exact test), Q value = 0.23

Table S14466.  Gene #1364: 'RCOR3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
RCOR3 MUTATED 10 2 1 0
RCOR3 WILD-TYPE 168 181 100 20

Figure S3742.  Get High-res Image Gene #1364: 'RCOR3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'RCOR3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.129 (Fisher's exact test), Q value = 0.4

Table S14467.  Gene #1364: 'RCOR3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
RCOR3 MUTATED 1 1 6
RCOR3 WILD-TYPE 86 79 94
'RCOR3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.304 (Fisher's exact test), Q value = 0.63

Table S14468.  Gene #1364: 'RCOR3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
RCOR3 MUTATED 0 3 4
RCOR3 WILD-TYPE 89 157 134
'RCOR3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.365 (Fisher's exact test), Q value = 0.69

Table S14469.  Gene #1364: 'RCOR3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
RCOR3 MUTATED 5 2 0
RCOR3 WILD-TYPE 177 131 72
'RCOR3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0972 (Fisher's exact test), Q value = 0.34

Table S14470.  Gene #1364: 'RCOR3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
RCOR3 MUTATED 0 4 4 5
RCOR3 WILD-TYPE 112 92 88 181
'RCOR3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.014 (Fisher's exact test), Q value = 0.12

Table S14471.  Gene #1364: 'RCOR3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
RCOR3 MUTATED 0 1 6 0 1 2 3
RCOR3 WILD-TYPE 60 49 43 40 62 123 96

Figure S3743.  Get High-res Image Gene #1364: 'RCOR3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'RCOR3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.245 (Fisher's exact test), Q value = 0.57

Table S14472.  Gene #1364: 'RCOR3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
RCOR3 MUTATED 6 1 0 5
RCOR3 WILD-TYPE 124 77 68 191
'RCOR3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.207 (Fisher's exact test), Q value = 0.51

Table S14473.  Gene #1364: 'RCOR3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
RCOR3 MUTATED 1 4 0 1 3 0 0 2 1
RCOR3 WILD-TYPE 39 58 28 79 66 48 43 26 73
'RCOR3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.871 (Fisher's exact test), Q value = 1

Table S14474.  Gene #1364: 'RCOR3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
RCOR3 MUTATED 1 1 0 1
RCOR3 WILD-TYPE 32 30 27 18
'RCOR3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S14475.  Gene #1364: 'RCOR3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
RCOR3 MUTATED 2 0 1 0
RCOR3 WILD-TYPE 52 10 23 22
'HMOX1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.906 (Fisher's exact test), Q value = 1

Table S14476.  Gene #1365: 'HMOX1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
HMOX1 MUTATED 3 2 1 0
HMOX1 WILD-TYPE 175 181 100 20
'HMOX1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.323 (Fisher's exact test), Q value = 0.65

Table S14477.  Gene #1365: 'HMOX1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
HMOX1 MUTATED 0 1 3
HMOX1 WILD-TYPE 87 79 97
'HMOX1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.731 (Fisher's exact test), Q value = 1

Table S14478.  Gene #1365: 'HMOX1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
HMOX1 MUTATED 2 2 1
HMOX1 WILD-TYPE 87 158 137
'HMOX1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.719 (Fisher's exact test), Q value = 0.99

Table S14479.  Gene #1365: 'HMOX1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
HMOX1 MUTATED 3 2 0
HMOX1 WILD-TYPE 179 131 72
'HMOX1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.315 (Fisher's exact test), Q value = 0.64

Table S14480.  Gene #1365: 'HMOX1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
HMOX1 MUTATED 1 3 0 2
HMOX1 WILD-TYPE 111 93 92 184
'HMOX1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.2 (Fisher's exact test), Q value = 0.5

Table S14481.  Gene #1365: 'HMOX1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
HMOX1 MUTATED 0 1 2 0 1 0 2
HMOX1 WILD-TYPE 60 49 47 40 62 125 97
'HMOX1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.884 (Fisher's exact test), Q value = 1

Table S14482.  Gene #1365: 'HMOX1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
HMOX1 MUTATED 2 1 0 3
HMOX1 WILD-TYPE 128 77 68 193
'HMOX1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.161 (Fisher's exact test), Q value = 0.45

Table S14483.  Gene #1365: 'HMOX1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
HMOX1 MUTATED 1 1 1 0 3 0 0 0 0
HMOX1 WILD-TYPE 39 61 27 80 66 48 43 28 74
'UCHL5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.636 (Fisher's exact test), Q value = 0.93

Table S14484.  Gene #1366: 'UCHL5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
UCHL5 MUTATED 3 2 0 0
UCHL5 WILD-TYPE 175 181 101 20
'UCHL5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S14485.  Gene #1366: 'UCHL5 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
UCHL5 MUTATED 1 1 2
UCHL5 WILD-TYPE 86 79 98
'UCHL5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0839 (Fisher's exact test), Q value = 0.31

Table S14486.  Gene #1366: 'UCHL5 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
UCHL5 MUTATED 0 4 0
UCHL5 WILD-TYPE 89 156 138
'UCHL5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0354 (Fisher's exact test), Q value = 0.19

Table S14487.  Gene #1366: 'UCHL5 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
UCHL5 MUTATED 0 4 0
UCHL5 WILD-TYPE 182 129 72

Figure S3744.  Get High-res Image Gene #1366: 'UCHL5 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'UCHL5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.644 (Fisher's exact test), Q value = 0.93

Table S14488.  Gene #1366: 'UCHL5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
UCHL5 MUTATED 1 2 0 2
UCHL5 WILD-TYPE 111 94 92 184
'UCHL5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.235 (Fisher's exact test), Q value = 0.56

Table S14489.  Gene #1366: 'UCHL5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
UCHL5 MUTATED 1 1 0 0 0 0 3
UCHL5 WILD-TYPE 59 49 49 40 63 125 96
'UCHL5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.866 (Fisher's exact test), Q value = 1

Table S14490.  Gene #1366: 'UCHL5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
UCHL5 MUTATED 2 1 0 2
UCHL5 WILD-TYPE 128 77 68 194
'UCHL5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0859 (Fisher's exact test), Q value = 0.32

Table S14491.  Gene #1366: 'UCHL5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
UCHL5 MUTATED 0 0 2 0 1 0 0 0 2
UCHL5 WILD-TYPE 40 62 26 80 68 48 43 28 72
'NTRK2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0163 (Fisher's exact test), Q value = 0.13

Table S14492.  Gene #1367: 'NTRK2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
NTRK2 MUTATED 1 0 0 3
NTRK2 WILD-TYPE 45 58 64 40

Figure S3745.  Get High-res Image Gene #1367: 'NTRK2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'NTRK2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S14493.  Gene #1367: 'NTRK2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
NTRK2 MUTATED 1 2 1
NTRK2 WILD-TYPE 50 81 76
'NTRK2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.196 (Fisher's exact test), Q value = 0.5

Table S14494.  Gene #1367: 'NTRK2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
NTRK2 MUTATED 14 6 4 0
NTRK2 WILD-TYPE 164 177 97 20
'NTRK2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.921 (Fisher's exact test), Q value = 1

Table S14495.  Gene #1367: 'NTRK2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
NTRK2 MUTATED 7 7 7
NTRK2 WILD-TYPE 80 73 93
'NTRK2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.73 (Fisher's exact test), Q value = 1

Table S14496.  Gene #1367: 'NTRK2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
NTRK2 MUTATED 5 8 10
NTRK2 WILD-TYPE 84 152 128
'NTRK2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.921 (Fisher's exact test), Q value = 1

Table S14497.  Gene #1367: 'NTRK2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
NTRK2 MUTATED 10 9 4
NTRK2 WILD-TYPE 172 124 68
'NTRK2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0111 (Fisher's exact test), Q value = 0.1

Table S14498.  Gene #1367: 'NTRK2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
NTRK2 MUTATED 8 3 10 4
NTRK2 WILD-TYPE 104 93 82 182

Figure S3746.  Get High-res Image Gene #1367: 'NTRK2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'NTRK2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00847 (Fisher's exact test), Q value = 0.086

Table S14499.  Gene #1367: 'NTRK2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
NTRK2 MUTATED 3 2 7 2 6 1 4
NTRK2 WILD-TYPE 57 48 42 38 57 124 95

Figure S3747.  Get High-res Image Gene #1367: 'NTRK2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'NTRK2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.126 (Fisher's exact test), Q value = 0.39

Table S14500.  Gene #1367: 'NTRK2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
NTRK2 MUTATED 10 6 1 7
NTRK2 WILD-TYPE 120 72 67 189
'NTRK2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.14 (Fisher's exact test), Q value = 0.42

Table S14501.  Gene #1367: 'NTRK2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
NTRK2 MUTATED 4 6 3 4 3 2 0 1 1
NTRK2 WILD-TYPE 36 56 25 76 66 46 43 27 73
'NTRK2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.872 (Fisher's exact test), Q value = 1

Table S14502.  Gene #1367: 'NTRK2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
NTRK2 MUTATED 1 1 0 1
NTRK2 WILD-TYPE 32 30 27 18
'NTRK2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0859 (Fisher's exact test), Q value = 0.32

Table S14503.  Gene #1367: 'NTRK2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
NTRK2 MUTATED 0 1 1 1
NTRK2 WILD-TYPE 54 9 23 21
'MFAP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0763 (Fisher's exact test), Q value = 0.3

Table S14504.  Gene #1368: 'MFAP1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
MFAP1 MUTATED 3 0 1 1
MFAP1 WILD-TYPE 175 183 100 19
'MFAP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S14505.  Gene #1368: 'MFAP1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
MFAP1 MUTATED 2 1 2
MFAP1 WILD-TYPE 85 79 98
'MFAP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.686 (Fisher's exact test), Q value = 0.96

Table S14506.  Gene #1368: 'MFAP1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
MFAP1 MUTATED 0 2 2
MFAP1 WILD-TYPE 89 158 136
'MFAP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.326 (Fisher's exact test), Q value = 0.66

Table S14507.  Gene #1368: 'MFAP1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
MFAP1 MUTATED 1 3 0
MFAP1 WILD-TYPE 181 130 72
'MFAP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00666 (Fisher's exact test), Q value = 0.075

Table S14508.  Gene #1368: 'MFAP1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
MFAP1 MUTATED 1 4 0 0
MFAP1 WILD-TYPE 111 92 92 186

Figure S3748.  Get High-res Image Gene #1368: 'MFAP1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'MFAP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0202 (Fisher's exact test), Q value = 0.14

Table S14509.  Gene #1368: 'MFAP1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
MFAP1 MUTATED 1 2 2 0 0 0 0
MFAP1 WILD-TYPE 59 48 47 40 63 125 99

Figure S3749.  Get High-res Image Gene #1368: 'MFAP1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'MFAP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.129 (Fisher's exact test), Q value = 0.4

Table S14510.  Gene #1368: 'MFAP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
MFAP1 MUTATED 4 0 0 1
MFAP1 WILD-TYPE 126 78 68 195
'MFAP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.695 (Fisher's exact test), Q value = 0.97

Table S14511.  Gene #1368: 'MFAP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
MFAP1 MUTATED 0 0 1 1 2 0 0 0 1
MFAP1 WILD-TYPE 40 62 27 79 67 48 43 28 73
'RNF215 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.663 (Fisher's exact test), Q value = 0.95

Table S14512.  Gene #1369: 'RNF215 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
RNF215 MUTATED 2 1 0 0
RNF215 WILD-TYPE 176 182 101 20
'RNF215 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.78 (Fisher's exact test), Q value = 1

Table S14513.  Gene #1369: 'RNF215 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
RNF215 MUTATED 1 0 2
RNF215 WILD-TYPE 86 80 98
'RNF215 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.336 (Fisher's exact test), Q value = 0.66

Table S14514.  Gene #1369: 'RNF215 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
RNF215 MUTATED 1 0 2
RNF215 WILD-TYPE 88 160 136
'RNF215 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S14515.  Gene #1369: 'RNF215 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
RNF215 MUTATED 2 1 0
RNF215 WILD-TYPE 180 132 72
'RNF215 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.12 (Fisher's exact test), Q value = 0.39

Table S14516.  Gene #1369: 'RNF215 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
RNF215 MUTATED 1 2 0 0
RNF215 WILD-TYPE 111 94 92 186
'RNF215 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00662 (Fisher's exact test), Q value = 0.074

Table S14517.  Gene #1369: 'RNF215 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
RNF215 MUTATED 0 0 1 2 0 0 0
RNF215 WILD-TYPE 60 50 48 38 63 125 99

Figure S3750.  Get High-res Image Gene #1369: 'RNF215 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'RNF215 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.22 (Fisher's exact test), Q value = 0.53

Table S14518.  Gene #1369: 'RNF215 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
RNF215 MUTATED 2 1 0 0
RNF215 WILD-TYPE 128 77 68 196
'RNF215 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0359 (Fisher's exact test), Q value = 0.2

Table S14519.  Gene #1369: 'RNF215 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
RNF215 MUTATED 2 0 0 0 0 0 1 0 0
RNF215 WILD-TYPE 38 62 28 80 69 48 42 28 74

Figure S3751.  Get High-res Image Gene #1369: 'RNF215 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'FANCD2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0173 (Fisher's exact test), Q value = 0.13

Table S14520.  Gene #1370: 'FANCD2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
FANCD2 MUTATED 4 1 0 4
FANCD2 WILD-TYPE 42 57 64 39

Figure S3752.  Get High-res Image Gene #1370: 'FANCD2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'FANCD2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0982 (Fisher's exact test), Q value = 0.34

Table S14521.  Gene #1370: 'FANCD2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
FANCD2 MUTATED 5 2 2
FANCD2 WILD-TYPE 46 81 75
'FANCD2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00259 (Fisher's exact test), Q value = 0.044

Table S14522.  Gene #1370: 'FANCD2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
FANCD2 MUTATED 14 2 1 1
FANCD2 WILD-TYPE 164 181 100 19

Figure S3753.  Get High-res Image Gene #1370: 'FANCD2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'FANCD2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.437 (Fisher's exact test), Q value = 0.76

Table S14523.  Gene #1370: 'FANCD2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
FANCD2 MUTATED 3 1 5
FANCD2 WILD-TYPE 84 79 95
'FANCD2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.508 (Fisher's exact test), Q value = 0.83

Table S14524.  Gene #1370: 'FANCD2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
FANCD2 MUTATED 2 4 7
FANCD2 WILD-TYPE 87 156 131
'FANCD2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S14525.  Gene #1370: 'FANCD2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
FANCD2 MUTATED 6 5 2
FANCD2 WILD-TYPE 176 128 70
'FANCD2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.576 (Fisher's exact test), Q value = 0.88

Table S14526.  Gene #1370: 'FANCD2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
FANCD2 MUTATED 2 5 3 8
FANCD2 WILD-TYPE 110 91 89 178
'FANCD2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0132 (Fisher's exact test), Q value = 0.11

Table S14527.  Gene #1370: 'FANCD2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
FANCD2 MUTATED 2 0 5 3 0 2 6
FANCD2 WILD-TYPE 58 50 44 37 63 123 93

Figure S3754.  Get High-res Image Gene #1370: 'FANCD2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'FANCD2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.464 (Fisher's exact test), Q value = 0.79

Table S14528.  Gene #1370: 'FANCD2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
FANCD2 MUTATED 6 1 1 9
FANCD2 WILD-TYPE 124 77 67 187
'FANCD2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00291 (Fisher's exact test), Q value = 0.048

Table S14529.  Gene #1370: 'FANCD2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
FANCD2 MUTATED 3 0 1 2 9 0 1 0 1
FANCD2 WILD-TYPE 37 62 27 78 60 48 42 28 73

Figure S3755.  Get High-res Image Gene #1370: 'FANCD2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'FANCD2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.703 (Fisher's exact test), Q value = 0.97

Table S14530.  Gene #1370: 'FANCD2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
FANCD2 MUTATED 2 1 0 0
FANCD2 WILD-TYPE 31 30 27 19
'FANCD2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.564 (Fisher's exact test), Q value = 0.87

Table S14531.  Gene #1370: 'FANCD2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
FANCD2 MUTATED 3 0 0 0
FANCD2 WILD-TYPE 51 10 24 22
'CD34 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.154 (Fisher's exact test), Q value = 0.44

Table S14532.  Gene #1371: 'CD34 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
CD34 MUTATED 4 0 2 0
CD34 WILD-TYPE 174 183 99 20
'CD34 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.329 (Fisher's exact test), Q value = 0.66

Table S14533.  Gene #1371: 'CD34 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
CD34 MUTATED 3 0 2
CD34 WILD-TYPE 84 80 98
'CD34 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.83 (Fisher's exact test), Q value = 1

Table S14534.  Gene #1371: 'CD34 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
CD34 MUTATED 1 1 2
CD34 WILD-TYPE 88 159 136
'CD34 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.527 (Fisher's exact test), Q value = 0.85

Table S14535.  Gene #1371: 'CD34 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
CD34 MUTATED 1 2 1
CD34 WILD-TYPE 181 131 71
'CD34 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.103 (Fisher's exact test), Q value = 0.36

Table S14536.  Gene #1371: 'CD34 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
CD34 MUTATED 0 3 2 1
CD34 WILD-TYPE 112 93 90 185
'CD34 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0246 (Fisher's exact test), Q value = 0.16

Table S14537.  Gene #1371: 'CD34 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
CD34 MUTATED 0 3 0 0 2 0 1
CD34 WILD-TYPE 60 47 49 40 61 125 98

Figure S3756.  Get High-res Image Gene #1371: 'CD34 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CD34 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.575 (Fisher's exact test), Q value = 0.88

Table S14538.  Gene #1371: 'CD34 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
CD34 MUTATED 2 2 0 2
CD34 WILD-TYPE 128 76 68 194
'CD34 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.921 (Fisher's exact test), Q value = 1

Table S14539.  Gene #1371: 'CD34 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
CD34 MUTATED 1 1 1 1 1 0 0 0 1
CD34 WILD-TYPE 39 61 27 79 68 48 43 28 73
'ZSWIM3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.287 (Fisher's exact test), Q value = 0.62

Table S14540.  Gene #1372: 'ZSWIM3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ZSWIM3 MUTATED 2 2 0 2
ZSWIM3 WILD-TYPE 44 56 64 41
'ZSWIM3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.117 (Fisher's exact test), Q value = 0.38

Table S14541.  Gene #1372: 'ZSWIM3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ZSWIM3 MUTATED 3 3 0
ZSWIM3 WILD-TYPE 48 80 77
'ZSWIM3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.33 (Fisher's exact test), Q value = 0.66

Table S14542.  Gene #1372: 'ZSWIM3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ZSWIM3 MUTATED 8 4 1 0
ZSWIM3 WILD-TYPE 170 179 100 20
'ZSWIM3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0198 (Fisher's exact test), Q value = 0.14

Table S14543.  Gene #1372: 'ZSWIM3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ZSWIM3 MUTATED 0 1 6
ZSWIM3 WILD-TYPE 87 79 94

Figure S3757.  Get High-res Image Gene #1372: 'ZSWIM3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'ZSWIM3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.353 (Fisher's exact test), Q value = 0.68

Table S14544.  Gene #1372: 'ZSWIM3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ZSWIM3 MUTATED 3 2 5
ZSWIM3 WILD-TYPE 86 158 133
'ZSWIM3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.695 (Fisher's exact test), Q value = 0.97

Table S14545.  Gene #1372: 'ZSWIM3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ZSWIM3 MUTATED 6 2 2
ZSWIM3 WILD-TYPE 176 131 70
'ZSWIM3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.469 (Fisher's exact test), Q value = 0.8

Table S14546.  Gene #1372: 'ZSWIM3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ZSWIM3 MUTATED 1 4 2 6
ZSWIM3 WILD-TYPE 111 92 90 180
'ZSWIM3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.386 (Fisher's exact test), Q value = 0.71

Table S14547.  Gene #1372: 'ZSWIM3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ZSWIM3 MUTATED 0 2 3 1 1 2 4
ZSWIM3 WILD-TYPE 60 48 46 39 62 123 95
'ZSWIM3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.863 (Fisher's exact test), Q value = 1

Table S14548.  Gene #1372: 'ZSWIM3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ZSWIM3 MUTATED 4 1 1 6
ZSWIM3 WILD-TYPE 126 77 67 190
'ZSWIM3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.297 (Fisher's exact test), Q value = 0.63

Table S14549.  Gene #1372: 'ZSWIM3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ZSWIM3 MUTATED 2 1 2 1 4 0 1 0 1
ZSWIM3 WILD-TYPE 38 61 26 79 65 48 42 28 73
'SLC16A2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.233 (Fisher's exact test), Q value = 0.55

Table S14550.  Gene #1373: 'SLC16A2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
SLC16A2 MUTATED 2 1 0 0
SLC16A2 WILD-TYPE 44 57 64 43
'SLC16A2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.253 (Fisher's exact test), Q value = 0.58

Table S14551.  Gene #1373: 'SLC16A2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
SLC16A2 MUTATED 2 1 0
SLC16A2 WILD-TYPE 49 82 77
'SLC16A2 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S14552.  Gene #1373: 'SLC16A2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
SLC16A2 MUTATED 3 3 2 0
SLC16A2 WILD-TYPE 175 180 99 20
'SLC16A2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.738 (Fisher's exact test), Q value = 1

Table S14553.  Gene #1373: 'SLC16A2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
SLC16A2 MUTATED 2 2 1
SLC16A2 WILD-TYPE 85 78 99
'SLC16A2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.729 (Fisher's exact test), Q value = 1

Table S14554.  Gene #1373: 'SLC16A2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
SLC16A2 MUTATED 2 2 1
SLC16A2 WILD-TYPE 87 158 137
'SLC16A2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S14555.  Gene #1373: 'SLC16A2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
SLC16A2 MUTATED 2 2 1
SLC16A2 WILD-TYPE 180 131 71
'SLC16A2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.925 (Fisher's exact test), Q value = 1

Table S14556.  Gene #1373: 'SLC16A2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
SLC16A2 MUTATED 2 1 2 3
SLC16A2 WILD-TYPE 110 95 90 183
'SLC16A2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.551 (Fisher's exact test), Q value = 0.87

Table S14557.  Gene #1373: 'SLC16A2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
SLC16A2 MUTATED 2 0 0 1 2 1 2
SLC16A2 WILD-TYPE 58 50 49 39 61 124 97
'SLC16A2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.297 (Fisher's exact test), Q value = 0.63

Table S14558.  Gene #1373: 'SLC16A2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
SLC16A2 MUTATED 2 1 3 2
SLC16A2 WILD-TYPE 128 77 65 194
'SLC16A2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.304 (Fisher's exact test), Q value = 0.63

Table S14559.  Gene #1373: 'SLC16A2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
SLC16A2 MUTATED 2 1 0 1 1 0 2 1 0
SLC16A2 WILD-TYPE 38 61 28 79 68 48 41 27 74
'SLC16A2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.628 (Fisher's exact test), Q value = 0.92

Table S14560.  Gene #1373: 'SLC16A2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
SLC16A2 MUTATED 0 1 1 1
SLC16A2 WILD-TYPE 33 30 26 18
'SLC16A2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.838 (Fisher's exact test), Q value = 1

Table S14561.  Gene #1373: 'SLC16A2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
SLC16A2 MUTATED 2 0 0 1
SLC16A2 WILD-TYPE 52 10 24 21
'DDHD2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.121 (Fisher's exact test), Q value = 0.39

Table S14562.  Gene #1374: 'DDHD2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
DDHD2 MUTATED 2 0 0 1
DDHD2 WILD-TYPE 44 58 64 42
'DDHD2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0141 (Fisher's exact test), Q value = 0.12

Table S14563.  Gene #1374: 'DDHD2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
DDHD2 MUTATED 3 0 0
DDHD2 WILD-TYPE 48 83 77

Figure S3758.  Get High-res Image Gene #1374: 'DDHD2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'DDHD2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.167 (Fisher's exact test), Q value = 0.46

Table S14564.  Gene #1374: 'DDHD2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
DDHD2 MUTATED 8 2 1 0
DDHD2 WILD-TYPE 170 181 100 20
'DDHD2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.548 (Fisher's exact test), Q value = 0.87

Table S14565.  Gene #1374: 'DDHD2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
DDHD2 MUTATED 2 4 2
DDHD2 WILD-TYPE 85 76 98
'DDHD2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.6 (Fisher's exact test), Q value = 0.9

Table S14566.  Gene #1374: 'DDHD2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
DDHD2 MUTATED 1 4 5
DDHD2 WILD-TYPE 88 156 133
'DDHD2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.583 (Fisher's exact test), Q value = 0.89

Table S14567.  Gene #1374: 'DDHD2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
DDHD2 MUTATED 4 3 3
DDHD2 WILD-TYPE 178 130 69
'DDHD2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.79 (Fisher's exact test), Q value = 1

Table S14568.  Gene #1374: 'DDHD2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
DDHD2 MUTATED 3 2 3 3
DDHD2 WILD-TYPE 109 94 89 183
'DDHD2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0871 (Fisher's exact test), Q value = 0.32

Table S14569.  Gene #1374: 'DDHD2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
DDHD2 MUTATED 2 2 3 0 1 0 3
DDHD2 WILD-TYPE 58 48 46 40 62 125 96
'DDHD2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.712 (Fisher's exact test), Q value = 0.98

Table S14570.  Gene #1374: 'DDHD2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
DDHD2 MUTATED 5 1 1 4
DDHD2 WILD-TYPE 125 77 67 192
'DDHD2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.251 (Fisher's exact test), Q value = 0.58

Table S14571.  Gene #1374: 'DDHD2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
DDHD2 MUTATED 1 1 1 1 5 1 1 0 0
DDHD2 WILD-TYPE 39 61 27 79 64 47 42 28 74
'DDHD2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.783 (Fisher's exact test), Q value = 1

Table S14572.  Gene #1374: 'DDHD2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
DDHD2 MUTATED 1 0 1 1
DDHD2 WILD-TYPE 32 31 26 18
'DDHD2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.448 (Fisher's exact test), Q value = 0.77

Table S14573.  Gene #1374: 'DDHD2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
DDHD2 MUTATED 1 0 2 0
DDHD2 WILD-TYPE 53 10 22 22
'GKN1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0641 (Fisher's exact test), Q value = 0.27

Table S14574.  Gene #1375: 'GKN1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
GKN1 MUTATED 1 0 0 2
GKN1 WILD-TYPE 45 58 64 41
'GKN1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0615 (Fisher's exact test), Q value = 0.27

Table S14575.  Gene #1375: 'GKN1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
GKN1 MUTATED 0 0 3
GKN1 WILD-TYPE 51 83 74
'GKN1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.339 (Fisher's exact test), Q value = 0.67

Table S14576.  Gene #1375: 'GKN1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
GKN1 MUTATED 2 1 3 0
GKN1 WILD-TYPE 176 182 98 20
'GKN1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S14577.  Gene #1375: 'GKN1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
GKN1 MUTATED 1 1 1
GKN1 WILD-TYPE 86 79 99
'GKN1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S14578.  Gene #1375: 'GKN1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
GKN1 MUTATED 1 2 1
GKN1 WILD-TYPE 88 158 137
'GKN1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.83 (Fisher's exact test), Q value = 1

Table S14579.  Gene #1375: 'GKN1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
GKN1 MUTATED 2 2 0
GKN1 WILD-TYPE 180 131 72
'GKN1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S14580.  Gene #1375: 'GKN1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
GKN1 MUTATED 1 1 1 3
GKN1 WILD-TYPE 111 95 91 183
'GKN1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.191 (Fisher's exact test), Q value = 0.49

Table S14581.  Gene #1375: 'GKN1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
GKN1 MUTATED 2 1 0 1 0 0 2
GKN1 WILD-TYPE 58 49 49 39 63 125 97
'GKN1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.481 (Fisher's exact test), Q value = 0.81

Table S14582.  Gene #1375: 'GKN1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
GKN1 MUTATED 1 1 2 2
GKN1 WILD-TYPE 129 77 66 194
'GKN1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.375 (Fisher's exact test), Q value = 0.7

Table S14583.  Gene #1375: 'GKN1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
GKN1 MUTATED 1 0 1 1 1 0 1 1 0
GKN1 WILD-TYPE 39 62 27 79 68 48 42 27 74
'F2R MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0333 (Fisher's exact test), Q value = 0.19

Table S14584.  Gene #1376: 'F2R MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
F2R MUTATED 9 1 1 0
F2R WILD-TYPE 169 182 100 20

Figure S3759.  Get High-res Image Gene #1376: 'F2R MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'F2R MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.403 (Fisher's exact test), Q value = 0.73

Table S14585.  Gene #1376: 'F2R MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
F2R MUTATED 2 2 6
F2R WILD-TYPE 85 78 94
'F2R MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.211 (Fisher's exact test), Q value = 0.52

Table S14586.  Gene #1376: 'F2R MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
F2R MUTATED 0 4 5
F2R WILD-TYPE 89 156 133
'F2R MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.74 (Fisher's exact test), Q value = 1

Table S14587.  Gene #1376: 'F2R MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
F2R MUTATED 5 2 2
F2R WILD-TYPE 177 131 70
'F2R MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0512 (Fisher's exact test), Q value = 0.24

Table S14588.  Gene #1376: 'F2R MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
F2R MUTATED 2 5 3 1
F2R WILD-TYPE 110 91 89 185
'F2R MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0419 (Fisher's exact test), Q value = 0.22

Table S14589.  Gene #1376: 'F2R MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
F2R MUTATED 1 2 3 2 2 0 1
F2R WILD-TYPE 59 48 46 38 61 125 98

Figure S3760.  Get High-res Image Gene #1376: 'F2R MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'F2R MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0931 (Fisher's exact test), Q value = 0.33

Table S14590.  Gene #1376: 'F2R MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
F2R MUTATED 7 1 1 2
F2R WILD-TYPE 123 77 67 194
'F2R MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.664 (Fisher's exact test), Q value = 0.95

Table S14591.  Gene #1376: 'F2R MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
F2R MUTATED 2 2 0 2 3 1 1 0 0
F2R WILD-TYPE 38 60 28 78 66 47 42 28 74
'CYP20A1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00337 (Fisher's exact test), Q value = 0.052

Table S14592.  Gene #1377: 'CYP20A1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
CYP20A1 MUTATED 7 0 0 1
CYP20A1 WILD-TYPE 171 183 101 19

Figure S3761.  Get High-res Image Gene #1377: 'CYP20A1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'CYP20A1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.682 (Fisher's exact test), Q value = 0.96

Table S14593.  Gene #1377: 'CYP20A1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
CYP20A1 MUTATED 3 1 2
CYP20A1 WILD-TYPE 84 79 98
'CYP20A1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.875 (Fisher's exact test), Q value = 1

Table S14594.  Gene #1377: 'CYP20A1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
CYP20A1 MUTATED 1 2 3
CYP20A1 WILD-TYPE 88 158 135
'CYP20A1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.863 (Fisher's exact test), Q value = 1

Table S14595.  Gene #1377: 'CYP20A1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
CYP20A1 MUTATED 2 3 1
CYP20A1 WILD-TYPE 180 130 71
'CYP20A1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.56 (Fisher's exact test), Q value = 0.87

Table S14596.  Gene #1377: 'CYP20A1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
CYP20A1 MUTATED 1 3 2 2
CYP20A1 WILD-TYPE 111 93 90 184
'CYP20A1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0482 (Fisher's exact test), Q value = 0.23

Table S14597.  Gene #1377: 'CYP20A1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
CYP20A1 MUTATED 1 1 4 0 0 1 1
CYP20A1 WILD-TYPE 59 49 45 40 63 124 98

Figure S3762.  Get High-res Image Gene #1377: 'CYP20A1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CYP20A1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.634 (Fisher's exact test), Q value = 0.93

Table S14598.  Gene #1377: 'CYP20A1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
CYP20A1 MUTATED 3 2 0 3
CYP20A1 WILD-TYPE 127 76 68 193
'CYP20A1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.706 (Fisher's exact test), Q value = 0.98

Table S14599.  Gene #1377: 'CYP20A1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
CYP20A1 MUTATED 2 1 0 1 1 0 0 1 2
CYP20A1 WILD-TYPE 38 61 28 79 68 48 43 27 72
'ZP2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.135 (Fisher's exact test), Q value = 0.41

Table S14600.  Gene #1378: 'ZP2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ZP2 MUTATED 3 0 1 2
ZP2 WILD-TYPE 43 58 63 41
'ZP2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0707 (Fisher's exact test), Q value = 0.29

Table S14601.  Gene #1378: 'ZP2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ZP2 MUTATED 4 1 1
ZP2 WILD-TYPE 47 82 76
'ZP2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.266 (Fisher's exact test), Q value = 0.59

Table S14602.  Gene #1378: 'ZP2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ZP2 MUTATED 9 3 2 0
ZP2 WILD-TYPE 169 180 99 20
'ZP2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.914 (Fisher's exact test), Q value = 1

Table S14603.  Gene #1378: 'ZP2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ZP2 MUTATED 3 2 4
ZP2 WILD-TYPE 84 78 96
'ZP2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.525 (Fisher's exact test), Q value = 0.85

Table S14604.  Gene #1378: 'ZP2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ZP2 MUTATED 1 6 5
ZP2 WILD-TYPE 88 154 133
'ZP2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.148 (Fisher's exact test), Q value = 0.43

Table S14605.  Gene #1378: 'ZP2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ZP2 MUTATED 4 3 5
ZP2 WILD-TYPE 178 130 67
'ZP2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.913 (Fisher's exact test), Q value = 1

Table S14606.  Gene #1378: 'ZP2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ZP2 MUTATED 4 2 3 5
ZP2 WILD-TYPE 108 94 89 181
'ZP2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.172 (Fisher's exact test), Q value = 0.47

Table S14607.  Gene #1378: 'ZP2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ZP2 MUTATED 4 1 2 0 1 1 5
ZP2 WILD-TYPE 56 49 47 40 62 124 94
'ZP2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.961 (Fisher's exact test), Q value = 1

Table S14608.  Gene #1378: 'ZP2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ZP2 MUTATED 4 2 1 7
ZP2 WILD-TYPE 126 76 67 189
'ZP2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.346 (Fisher's exact test), Q value = 0.67

Table S14609.  Gene #1378: 'ZP2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ZP2 MUTATED 0 2 1 3 4 3 1 0 0
ZP2 WILD-TYPE 40 60 27 77 65 45 42 28 74
'ZP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.628 (Fisher's exact test), Q value = 0.92

Table S14610.  Gene #1378: 'ZP2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
ZP2 MUTATED 0 1 1 1
ZP2 WILD-TYPE 33 30 26 18
'ZP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.449 (Fisher's exact test), Q value = 0.77

Table S14611.  Gene #1378: 'ZP2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
ZP2 MUTATED 1 0 2 0
ZP2 WILD-TYPE 53 10 22 22
'RAB38 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.178 (Fisher's exact test), Q value = 0.48

Table S14612.  Gene #1379: 'RAB38 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
RAB38 MUTATED 4 0 1 0
RAB38 WILD-TYPE 174 183 100 20
'RAB38 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.467 (Fisher's exact test), Q value = 0.79

Table S14613.  Gene #1379: 'RAB38 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
RAB38 MUTATED 0 2 2
RAB38 WILD-TYPE 87 78 98
'RAB38 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.551 (Fisher's exact test), Q value = 0.87

Table S14614.  Gene #1379: 'RAB38 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
RAB38 MUTATED 0 3 1
RAB38 WILD-TYPE 89 157 137
'RAB38 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.328 (Fisher's exact test), Q value = 0.66

Table S14615.  Gene #1379: 'RAB38 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
RAB38 MUTATED 1 3 0
RAB38 WILD-TYPE 181 130 72
'RAB38 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.374 (Fisher's exact test), Q value = 0.7

Table S14616.  Gene #1379: 'RAB38 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
RAB38 MUTATED 2 2 0 1
RAB38 WILD-TYPE 110 94 92 185
'RAB38 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.154 (Fisher's exact test), Q value = 0.44

Table S14617.  Gene #1379: 'RAB38 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
RAB38 MUTATED 1 1 2 0 0 0 1
RAB38 WILD-TYPE 59 49 47 40 63 125 98
'RAB38 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.128 (Fisher's exact test), Q value = 0.4

Table S14618.  Gene #1379: 'RAB38 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
RAB38 MUTATED 4 0 0 1
RAB38 WILD-TYPE 126 78 68 195
'RAB38 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.247 (Fisher's exact test), Q value = 0.57

Table S14619.  Gene #1379: 'RAB38 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
RAB38 MUTATED 2 0 0 1 2 0 0 0 0
RAB38 WILD-TYPE 38 62 28 79 67 48 43 28 74
'TCF7 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.132 (Fisher's exact test), Q value = 0.4

Table S14620.  Gene #1380: 'TCF7 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
TCF7 MUTATED 1 0 1 3
TCF7 WILD-TYPE 45 58 63 40
'TCF7 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.115 (Fisher's exact test), Q value = 0.38

Table S14621.  Gene #1380: 'TCF7 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
TCF7 MUTATED 2 0 3
TCF7 WILD-TYPE 49 83 74
'TCF7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00013 (Fisher's exact test), Q value = 0.0063

Table S14622.  Gene #1380: 'TCF7 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
TCF7 MUTATED 12 0 0 0
TCF7 WILD-TYPE 166 183 101 20

Figure S3763.  Get High-res Image Gene #1380: 'TCF7 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'TCF7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0252 (Fisher's exact test), Q value = 0.16

Table S14623.  Gene #1380: 'TCF7 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
TCF7 MUTATED 1 0 6
TCF7 WILD-TYPE 86 80 94

Figure S3764.  Get High-res Image Gene #1380: 'TCF7 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'TCF7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.424 (Fisher's exact test), Q value = 0.75

Table S14624.  Gene #1380: 'TCF7 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
TCF7 MUTATED 1 5 6
TCF7 WILD-TYPE 88 155 132
'TCF7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.542 (Fisher's exact test), Q value = 0.86

Table S14625.  Gene #1380: 'TCF7 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
TCF7 MUTATED 5 6 1
TCF7 WILD-TYPE 177 127 71
'TCF7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0741 (Fisher's exact test), Q value = 0.29

Table S14626.  Gene #1380: 'TCF7 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
TCF7 MUTATED 0 5 2 4
TCF7 WILD-TYPE 112 91 90 182
'TCF7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.141 (Fisher's exact test), Q value = 0.42

Table S14627.  Gene #1380: 'TCF7 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
TCF7 MUTATED 1 1 2 2 1 0 4
TCF7 WILD-TYPE 59 49 47 38 62 125 95
'TCF7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.539 (Fisher's exact test), Q value = 0.86

Table S14628.  Gene #1380: 'TCF7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
TCF7 MUTATED 4 1 0 6
TCF7 WILD-TYPE 126 77 68 190
'TCF7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.414 (Fisher's exact test), Q value = 0.74

Table S14629.  Gene #1380: 'TCF7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
TCF7 MUTATED 1 1 0 2 5 0 0 0 2
TCF7 WILD-TYPE 39 61 28 78 64 48 43 28 72
'NUFIP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00452 (Fisher's exact test), Q value = 0.061

Table S14630.  Gene #1381: 'NUFIP1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
NUFIP1 MUTATED 8 0 0 0
NUFIP1 WILD-TYPE 170 183 101 20

Figure S3765.  Get High-res Image Gene #1381: 'NUFIP1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'NUFIP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.289 (Fisher's exact test), Q value = 0.62

Table S14631.  Gene #1381: 'NUFIP1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
NUFIP1 MUTATED 3 0 3
NUFIP1 WILD-TYPE 84 80 97
'NUFIP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.874 (Fisher's exact test), Q value = 1

Table S14632.  Gene #1381: 'NUFIP1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
NUFIP1 MUTATED 1 2 3
NUFIP1 WILD-TYPE 88 158 135
'NUFIP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0556 (Fisher's exact test), Q value = 0.26

Table S14633.  Gene #1381: 'NUFIP1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
NUFIP1 MUTATED 1 5 0
NUFIP1 WILD-TYPE 181 128 72
'NUFIP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.122 (Fisher's exact test), Q value = 0.39

Table S14634.  Gene #1381: 'NUFIP1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
NUFIP1 MUTATED 0 4 1 3
NUFIP1 WILD-TYPE 112 92 91 183
'NUFIP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.102 (Fisher's exact test), Q value = 0.35

Table S14635.  Gene #1381: 'NUFIP1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
NUFIP1 MUTATED 0 2 2 0 1 0 3
NUFIP1 WILD-TYPE 60 48 47 40 62 125 96
'NUFIP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.736 (Fisher's exact test), Q value = 1

Table S14636.  Gene #1381: 'NUFIP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
NUFIP1 MUTATED 2 1 0 5
NUFIP1 WILD-TYPE 128 77 68 191
'NUFIP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.694 (Fisher's exact test), Q value = 0.97

Table S14637.  Gene #1381: 'NUFIP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
NUFIP1 MUTATED 0 1 1 1 3 0 0 0 2
NUFIP1 WILD-TYPE 40 61 27 79 66 48 43 28 72
'OR7D4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.124 (Fisher's exact test), Q value = 0.39

Table S14638.  Gene #1382: 'OR7D4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
OR7D4 MUTATED 6 3 0 1
OR7D4 WILD-TYPE 172 180 101 19
'OR7D4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.743 (Fisher's exact test), Q value = 1

Table S14639.  Gene #1382: 'OR7D4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
OR7D4 MUTATED 3 3 2
OR7D4 WILD-TYPE 84 77 98
'OR7D4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.172 (Fisher's exact test), Q value = 0.47

Table S14640.  Gene #1382: 'OR7D4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
OR7D4 MUTATED 0 6 3
OR7D4 WILD-TYPE 89 154 135
'OR7D4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.668 (Fisher's exact test), Q value = 0.95

Table S14641.  Gene #1382: 'OR7D4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
OR7D4 MUTATED 3 4 2
OR7D4 WILD-TYPE 179 129 70
'OR7D4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.613 (Fisher's exact test), Q value = 0.91

Table S14642.  Gene #1382: 'OR7D4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
OR7D4 MUTATED 4 1 2 3
OR7D4 WILD-TYPE 108 95 90 183
'OR7D4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.106 (Fisher's exact test), Q value = 0.36

Table S14643.  Gene #1382: 'OR7D4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
OR7D4 MUTATED 3 2 0 1 2 0 2
OR7D4 WILD-TYPE 57 48 49 39 61 125 97
'OR7D4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.78 (Fisher's exact test), Q value = 1

Table S14644.  Gene #1382: 'OR7D4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
OR7D4 MUTATED 3 2 2 3
OR7D4 WILD-TYPE 127 76 66 193
'OR7D4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.321 (Fisher's exact test), Q value = 0.65

Table S14645.  Gene #1382: 'OR7D4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
OR7D4 MUTATED 2 1 0 0 2 3 1 0 1
OR7D4 WILD-TYPE 38 61 28 80 67 45 42 28 73
'OR7D4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.326 (Fisher's exact test), Q value = 0.66

Table S14646.  Gene #1382: 'OR7D4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
OR7D4 MUTATED 3 1 0 0
OR7D4 WILD-TYPE 30 30 27 19
'OR7D4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.11 (Fisher's exact test), Q value = 0.37

Table S14647.  Gene #1382: 'OR7D4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
OR7D4 MUTATED 1 0 0 3
OR7D4 WILD-TYPE 53 10 24 19
'NUPL2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.073 (Fisher's exact test), Q value = 0.29

Table S14648.  Gene #1383: 'NUPL2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
NUPL2 MUTATED 2 0 0 2
NUPL2 WILD-TYPE 44 58 64 41
'NUPL2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.553 (Fisher's exact test), Q value = 0.87

Table S14649.  Gene #1383: 'NUPL2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
NUPL2 MUTATED 2 1 1
NUPL2 WILD-TYPE 49 82 76
'NUPL2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0503 (Fisher's exact test), Q value = 0.24

Table S14650.  Gene #1383: 'NUPL2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
NUPL2 MUTATED 7 2 0 1
NUPL2 WILD-TYPE 171 181 101 19
'NUPL2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.443 (Fisher's exact test), Q value = 0.77

Table S14651.  Gene #1383: 'NUPL2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
NUPL2 MUTATED 4 1 2
NUPL2 WILD-TYPE 83 79 98
'NUPL2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.603 (Fisher's exact test), Q value = 0.91

Table S14652.  Gene #1383: 'NUPL2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
NUPL2 MUTATED 1 4 5
NUPL2 WILD-TYPE 88 156 133
'NUPL2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.329 (Fisher's exact test), Q value = 0.66

Table S14653.  Gene #1383: 'NUPL2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
NUPL2 MUTATED 5 5 0
NUPL2 WILD-TYPE 177 128 72
'NUPL2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.973 (Fisher's exact test), Q value = 1

Table S14654.  Gene #1383: 'NUPL2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
NUPL2 MUTATED 2 2 2 5
NUPL2 WILD-TYPE 110 94 90 181
'NUPL2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.267 (Fisher's exact test), Q value = 0.59

Table S14655.  Gene #1383: 'NUPL2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
NUPL2 MUTATED 1 0 3 1 1 1 4
NUPL2 WILD-TYPE 59 50 46 39 62 124 95
'NUPL2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.893 (Fisher's exact test), Q value = 1

Table S14656.  Gene #1383: 'NUPL2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
NUPL2 MUTATED 3 2 1 3
NUPL2 WILD-TYPE 127 76 67 193
'NUPL2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.499 (Fisher's exact test), Q value = 0.83

Table S14657.  Gene #1383: 'NUPL2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
NUPL2 MUTATED 0 3 1 0 2 1 1 0 1
NUPL2 WILD-TYPE 40 59 27 80 67 47 42 28 73
'NUPL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.699 (Fisher's exact test), Q value = 0.97

Table S14658.  Gene #1383: 'NUPL2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
NUPL2 MUTATED 2 1 0 1
NUPL2 WILD-TYPE 31 30 27 18
'NUPL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.765 (Fisher's exact test), Q value = 1

Table S14659.  Gene #1383: 'NUPL2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
NUPL2 MUTATED 3 0 0 1
NUPL2 WILD-TYPE 51 10 24 21
'GNA14 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00692 (Fisher's exact test), Q value = 0.076

Table S14660.  Gene #1384: 'GNA14 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
GNA14 MUTATED 4 0 0 2
GNA14 WILD-TYPE 42 58 64 41

Figure S3766.  Get High-res Image Gene #1384: 'GNA14 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'GNA14 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0019 (Fisher's exact test), Q value = 0.036

Table S14661.  Gene #1384: 'GNA14 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
GNA14 MUTATED 5 0 1
GNA14 WILD-TYPE 46 83 76

Figure S3767.  Get High-res Image Gene #1384: 'GNA14 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'GNA14 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00591 (Fisher's exact test), Q value = 0.07

Table S14662.  Gene #1384: 'GNA14 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
GNA14 MUTATED 9 1 1 2
GNA14 WILD-TYPE 169 182 100 18

Figure S3768.  Get High-res Image Gene #1384: 'GNA14 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'GNA14 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.635 (Fisher's exact test), Q value = 0.93

Table S14663.  Gene #1384: 'GNA14 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
GNA14 MUTATED 2 1 4
GNA14 WILD-TYPE 85 79 96
'GNA14 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.197 (Fisher's exact test), Q value = 0.5

Table S14664.  Gene #1384: 'GNA14 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
GNA14 MUTATED 0 5 2
GNA14 WILD-TYPE 89 155 136
'GNA14 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.306 (Fisher's exact test), Q value = 0.64

Table S14665.  Gene #1384: 'GNA14 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
GNA14 MUTATED 3 4 0
GNA14 WILD-TYPE 179 129 72
'GNA14 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.823 (Fisher's exact test), Q value = 1

Table S14666.  Gene #1384: 'GNA14 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
GNA14 MUTATED 2 2 2 7
GNA14 WILD-TYPE 110 94 90 179
'GNA14 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0099 (Fisher's exact test), Q value = 0.095

Table S14667.  Gene #1384: 'GNA14 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
GNA14 MUTATED 4 0 2 0 1 0 6
GNA14 WILD-TYPE 56 50 47 40 62 125 93

Figure S3769.  Get High-res Image Gene #1384: 'GNA14 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'GNA14 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.368 (Fisher's exact test), Q value = 0.7

Table S14668.  Gene #1384: 'GNA14 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
GNA14 MUTATED 5 1 0 7
GNA14 WILD-TYPE 125 77 68 189
'GNA14 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.144 (Fisher's exact test), Q value = 0.42

Table S14669.  Gene #1384: 'GNA14 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
GNA14 MUTATED 1 0 1 2 6 1 0 1 1
GNA14 WILD-TYPE 39 62 27 78 63 47 43 27 73
'PREX2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0549 (Fisher's exact test), Q value = 0.25

Table S14670.  Gene #1385: 'PREX2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
PREX2 MUTATED 4 2 0 3
PREX2 WILD-TYPE 42 56 64 40
'PREX2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0167 (Fisher's exact test), Q value = 0.13

Table S14671.  Gene #1385: 'PREX2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
PREX2 MUTATED 6 2 1
PREX2 WILD-TYPE 45 81 76

Figure S3770.  Get High-res Image Gene #1385: 'PREX2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'PREX2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.197 (Fisher's exact test), Q value = 0.5

Table S14672.  Gene #1385: 'PREX2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
PREX2 MUTATED 18 10 4 1
PREX2 WILD-TYPE 160 173 97 19
'PREX2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.488 (Fisher's exact test), Q value = 0.81

Table S14673.  Gene #1385: 'PREX2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
PREX2 MUTATED 6 6 12
PREX2 WILD-TYPE 81 74 88
'PREX2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.101 (Fisher's exact test), Q value = 0.35

Table S14674.  Gene #1385: 'PREX2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
PREX2 MUTATED 6 7 15
PREX2 WILD-TYPE 83 153 123
'PREX2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.786 (Fisher's exact test), Q value = 1

Table S14675.  Gene #1385: 'PREX2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
PREX2 MUTATED 15 9 4
PREX2 WILD-TYPE 167 124 68
'PREX2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.186 (Fisher's exact test), Q value = 0.49

Table S14676.  Gene #1385: 'PREX2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
PREX2 MUTATED 13 6 6 9
PREX2 WILD-TYPE 99 90 86 177
'PREX2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0181 (Fisher's exact test), Q value = 0.13

Table S14677.  Gene #1385: 'PREX2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
PREX2 MUTATED 5 4 4 4 7 1 9
PREX2 WILD-TYPE 55 46 45 36 56 124 90

Figure S3771.  Get High-res Image Gene #1385: 'PREX2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'PREX2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.149 (Fisher's exact test), Q value = 0.43

Table S14678.  Gene #1385: 'PREX2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
PREX2 MUTATED 15 3 5 11
PREX2 WILD-TYPE 115 75 63 185
'PREX2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.375 (Fisher's exact test), Q value = 0.7

Table S14679.  Gene #1385: 'PREX2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
PREX2 MUTATED 3 4 2 5 10 5 1 1 3
PREX2 WILD-TYPE 37 58 26 75 59 43 42 27 71
'PREX2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.367 (Fisher's exact test), Q value = 0.7

Table S14680.  Gene #1385: 'PREX2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
PREX2 MUTATED 2 1 3 3
PREX2 WILD-TYPE 31 30 24 16
'PREX2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.618 (Fisher's exact test), Q value = 0.92

Table S14681.  Gene #1385: 'PREX2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
PREX2 MUTATED 4 1 1 3
PREX2 WILD-TYPE 50 9 23 19
'NEB MUTATION STATUS' versus 'MRNA_CNMF'

P value = 9e-05 (Fisher's exact test), Q value = 0.0048

Table S14682.  Gene #1386: 'NEB MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
NEB MUTATED 11 1 1 4
NEB WILD-TYPE 35 57 63 39

Figure S3772.  Get High-res Image Gene #1386: 'NEB MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'NEB MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00517 (Fisher's exact test), Q value = 0.065

Table S14683.  Gene #1386: 'NEB MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
NEB MUTATED 10 4 3
NEB WILD-TYPE 41 79 74

Figure S3773.  Get High-res Image Gene #1386: 'NEB MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'NEB MUTATION STATUS' versus 'CN_CNMF'

P value = 9e-05 (Fisher's exact test), Q value = 0.0048

Table S14684.  Gene #1386: 'NEB MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
NEB MUTATED 41 14 8 3
NEB WILD-TYPE 137 169 93 17

Figure S3774.  Get High-res Image Gene #1386: 'NEB MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'NEB MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0666 (Fisher's exact test), Q value = 0.28

Table S14685.  Gene #1386: 'NEB MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
NEB MUTATED 19 8 22
NEB WILD-TYPE 68 72 78
'NEB MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0519 (Fisher's exact test), Q value = 0.25

Table S14686.  Gene #1386: 'NEB MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
NEB MUTATED 6 27 23
NEB WILD-TYPE 83 133 115
'NEB MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.194 (Fisher's exact test), Q value = 0.5

Table S14687.  Gene #1386: 'NEB MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
NEB MUTATED 21 25 10
NEB WILD-TYPE 161 108 62
'NEB MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00865 (Fisher's exact test), Q value = 0.087

Table S14688.  Gene #1386: 'NEB MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
NEB MUTATED 9 20 18 19
NEB WILD-TYPE 103 76 74 167

Figure S3775.  Get High-res Image Gene #1386: 'NEB MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'NEB MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S14689.  Gene #1386: 'NEB MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
NEB MUTATED 7 17 12 5 6 5 14
NEB WILD-TYPE 53 33 37 35 57 120 85

Figure S3776.  Get High-res Image Gene #1386: 'NEB MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'NEB MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0142 (Fisher's exact test), Q value = 0.12

Table S14690.  Gene #1386: 'NEB MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
NEB MUTATED 28 10 4 23
NEB WILD-TYPE 102 68 64 173

Figure S3777.  Get High-res Image Gene #1386: 'NEB MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'NEB MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00076 (Fisher's exact test), Q value = 0.02

Table S14691.  Gene #1386: 'NEB MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
NEB MUTATED 12 9 6 7 16 1 6 3 5
NEB WILD-TYPE 28 53 22 73 53 47 37 25 69

Figure S3778.  Get High-res Image Gene #1386: 'NEB MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'NEB MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0114 (Fisher's exact test), Q value = 0.1

Table S14692.  Gene #1386: 'NEB MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
NEB MUTATED 4 4 3 9
NEB WILD-TYPE 29 27 24 10

Figure S3779.  Get High-res Image Gene #1386: 'NEB MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'NEB MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0341 (Fisher's exact test), Q value = 0.19

Table S14693.  Gene #1386: 'NEB MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
NEB MUTATED 11 0 8 1
NEB WILD-TYPE 43 10 16 21

Figure S3780.  Get High-res Image Gene #1386: 'NEB MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

'DTX3L MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.119 (Fisher's exact test), Q value = 0.38

Table S14694.  Gene #1387: 'DTX3L MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
DTX3L MUTATED 2 0 0 1
DTX3L WILD-TYPE 44 58 64 42
'DTX3L MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.462 (Fisher's exact test), Q value = 0.79

Table S14695.  Gene #1387: 'DTX3L MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
DTX3L MUTATED 1 2 0
DTX3L WILD-TYPE 50 81 77
'DTX3L MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0859 (Fisher's exact test), Q value = 0.32

Table S14696.  Gene #1387: 'DTX3L MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
DTX3L MUTATED 8 3 0 0
DTX3L WILD-TYPE 170 180 101 20
'DTX3L MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S14697.  Gene #1387: 'DTX3L MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
DTX3L MUTATED 3 2 3
DTX3L WILD-TYPE 84 78 97
'DTX3L MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.303 (Fisher's exact test), Q value = 0.63

Table S14698.  Gene #1387: 'DTX3L MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
DTX3L MUTATED 0 3 4
DTX3L WILD-TYPE 89 157 134
'DTX3L MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.684 (Fisher's exact test), Q value = 0.96

Table S14699.  Gene #1387: 'DTX3L MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
DTX3L MUTATED 4 3 0
DTX3L WILD-TYPE 178 130 72
'DTX3L MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.569 (Fisher's exact test), Q value = 0.88

Table S14700.  Gene #1387: 'DTX3L MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
DTX3L MUTATED 2 4 2 3
DTX3L WILD-TYPE 110 92 90 183
'DTX3L MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0595 (Fisher's exact test), Q value = 0.27

Table S14701.  Gene #1387: 'DTX3L MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
DTX3L MUTATED 2 2 4 0 0 1 2
DTX3L WILD-TYPE 58 48 45 40 63 124 97
'DTX3L MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.71 (Fisher's exact test), Q value = 0.98

Table S14702.  Gene #1387: 'DTX3L MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
DTX3L MUTATED 5 1 1 4
DTX3L WILD-TYPE 125 77 67 192
'DTX3L MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.144 (Fisher's exact test), Q value = 0.42

Table S14703.  Gene #1387: 'DTX3L MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
DTX3L MUTATED 0 0 2 3 3 1 2 0 0
DTX3L WILD-TYPE 40 62 26 77 66 47 41 28 74
'DTX3L MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.135 (Fisher's exact test), Q value = 0.41

Table S14704.  Gene #1387: 'DTX3L MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
DTX3L MUTATED 1 0 0 2
DTX3L WILD-TYPE 32 31 27 17
'DTX3L MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.696 (Fisher's exact test), Q value = 0.97

Table S14705.  Gene #1387: 'DTX3L MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
DTX3L MUTATED 1 0 1 1
DTX3L WILD-TYPE 53 10 23 21
'ARHGEF1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.103 (Fisher's exact test), Q value = 0.36

Table S14706.  Gene #1388: 'ARHGEF1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ARHGEF1 MUTATED 3 0 2 0
ARHGEF1 WILD-TYPE 43 58 62 43
'ARHGEF1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.251 (Fisher's exact test), Q value = 0.58

Table S14707.  Gene #1388: 'ARHGEF1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ARHGEF1 MUTATED 3 1 1
ARHGEF1 WILD-TYPE 48 82 76
'ARHGEF1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0892 (Fisher's exact test), Q value = 0.32

Table S14708.  Gene #1388: 'ARHGEF1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ARHGEF1 MUTATED 9 2 2 1
ARHGEF1 WILD-TYPE 169 181 99 19
'ARHGEF1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.123 (Fisher's exact test), Q value = 0.39

Table S14709.  Gene #1388: 'ARHGEF1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ARHGEF1 MUTATED 2 1 7
ARHGEF1 WILD-TYPE 85 79 93
'ARHGEF1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.653 (Fisher's exact test), Q value = 0.94

Table S14710.  Gene #1388: 'ARHGEF1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ARHGEF1 MUTATED 2 4 6
ARHGEF1 WILD-TYPE 87 156 132
'ARHGEF1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.395 (Fisher's exact test), Q value = 0.72

Table S14711.  Gene #1388: 'ARHGEF1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ARHGEF1 MUTATED 7 2 3
ARHGEF1 WILD-TYPE 175 131 69
'ARHGEF1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.555 (Fisher's exact test), Q value = 0.87

Table S14712.  Gene #1388: 'ARHGEF1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ARHGEF1 MUTATED 2 5 3 5
ARHGEF1 WILD-TYPE 110 91 89 181
'ARHGEF1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00959 (Fisher's exact test), Q value = 0.093

Table S14713.  Gene #1388: 'ARHGEF1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ARHGEF1 MUTATED 1 3 6 0 0 2 3
ARHGEF1 WILD-TYPE 59 47 43 40 63 123 96

Figure S3781.  Get High-res Image Gene #1388: 'ARHGEF1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ARHGEF1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.43 (Fisher's exact test), Q value = 0.76

Table S14714.  Gene #1388: 'ARHGEF1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ARHGEF1 MUTATED 7 1 2 5
ARHGEF1 WILD-TYPE 123 77 66 191
'ARHGEF1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0749 (Fisher's exact test), Q value = 0.29

Table S14715.  Gene #1388: 'ARHGEF1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ARHGEF1 MUTATED 2 2 2 0 6 1 1 0 1
ARHGEF1 WILD-TYPE 38 60 26 80 63 47 42 28 73
'ARHGEF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0705 (Fisher's exact test), Q value = 0.29

Table S14716.  Gene #1388: 'ARHGEF1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
ARHGEF1 MUTATED 1 0 1 3
ARHGEF1 WILD-TYPE 32 31 26 16
'ARHGEF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.576 (Fisher's exact test), Q value = 0.88

Table S14717.  Gene #1388: 'ARHGEF1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
ARHGEF1 MUTATED 3 0 2 0
ARHGEF1 WILD-TYPE 51 10 22 22
'VPS33A MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.032 (Fisher's exact test), Q value = 0.18

Table S14718.  Gene #1389: 'VPS33A MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
VPS33A MUTATED 3 0 0 1
VPS33A WILD-TYPE 43 58 64 42

Figure S3782.  Get High-res Image Gene #1389: 'VPS33A MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'VPS33A MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00315 (Fisher's exact test), Q value = 0.05

Table S14719.  Gene #1389: 'VPS33A MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
VPS33A MUTATED 4 0 0
VPS33A WILD-TYPE 47 83 77

Figure S3783.  Get High-res Image Gene #1389: 'VPS33A MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'VPS33A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0049 (Fisher's exact test), Q value = 0.063

Table S14720.  Gene #1389: 'VPS33A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
VPS33A MUTATED 8 0 0 0
VPS33A WILD-TYPE 170 183 101 20

Figure S3784.  Get High-res Image Gene #1389: 'VPS33A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'VPS33A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.037 (Fisher's exact test), Q value = 0.2

Table S14721.  Gene #1389: 'VPS33A MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
VPS33A MUTATED 0 0 4
VPS33A WILD-TYPE 87 80 96

Figure S3785.  Get High-res Image Gene #1389: 'VPS33A MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'VPS33A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.143 (Fisher's exact test), Q value = 0.42

Table S14722.  Gene #1389: 'VPS33A MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
VPS33A MUTATED 0 2 5
VPS33A WILD-TYPE 89 158 133
'VPS33A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.189 (Fisher's exact test), Q value = 0.49

Table S14723.  Gene #1389: 'VPS33A MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
VPS33A MUTATED 6 1 0
VPS33A WILD-TYPE 176 132 72
'VPS33A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.273 (Fisher's exact test), Q value = 0.6

Table S14724.  Gene #1389: 'VPS33A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
VPS33A MUTATED 0 2 3 3
VPS33A WILD-TYPE 112 94 89 183
'VPS33A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00212 (Fisher's exact test), Q value = 0.039

Table S14725.  Gene #1389: 'VPS33A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
VPS33A MUTATED 0 0 4 0 0 0 4
VPS33A WILD-TYPE 60 50 45 40 63 125 95

Figure S3786.  Get High-res Image Gene #1389: 'VPS33A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'VPS33A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.368 (Fisher's exact test), Q value = 0.7

Table S14726.  Gene #1389: 'VPS33A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
VPS33A MUTATED 1 1 0 6
VPS33A WILD-TYPE 129 77 68 190
'VPS33A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0143 (Fisher's exact test), Q value = 0.12

Table S14727.  Gene #1389: 'VPS33A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
VPS33A MUTATED 0 2 0 0 5 0 0 1 0
VPS33A WILD-TYPE 40 60 28 80 64 48 43 27 74

Figure S3787.  Get High-res Image Gene #1389: 'VPS33A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'FSTL4 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.784 (Fisher's exact test), Q value = 1

Table S14728.  Gene #1390: 'FSTL4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
FSTL4 MUTATED 1 0 1 1
FSTL4 WILD-TYPE 45 58 63 42
'FSTL4 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.349 (Fisher's exact test), Q value = 0.68

Table S14729.  Gene #1390: 'FSTL4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
FSTL4 MUTATED 1 0 2
FSTL4 WILD-TYPE 50 83 75
'FSTL4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00165 (Fisher's exact test), Q value = 0.034

Table S14730.  Gene #1390: 'FSTL4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
FSTL4 MUTATED 14 1 2 0
FSTL4 WILD-TYPE 164 182 99 20

Figure S3788.  Get High-res Image Gene #1390: 'FSTL4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'FSTL4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0182 (Fisher's exact test), Q value = 0.13

Table S14731.  Gene #1390: 'FSTL4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
FSTL4 MUTATED 6 0 8
FSTL4 WILD-TYPE 81 80 92

Figure S3789.  Get High-res Image Gene #1390: 'FSTL4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'FSTL4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00871 (Fisher's exact test), Q value = 0.087

Table S14732.  Gene #1390: 'FSTL4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
FSTL4 MUTATED 0 4 10
FSTL4 WILD-TYPE 89 156 128

Figure S3790.  Get High-res Image Gene #1390: 'FSTL4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'FSTL4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0407 (Fisher's exact test), Q value = 0.21

Table S14733.  Gene #1390: 'FSTL4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
FSTL4 MUTATED 11 3 0
FSTL4 WILD-TYPE 171 130 72

Figure S3791.  Get High-res Image Gene #1390: 'FSTL4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'FSTL4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00366 (Fisher's exact test), Q value = 0.055

Table S14734.  Gene #1390: 'FSTL4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
FSTL4 MUTATED 0 6 7 4
FSTL4 WILD-TYPE 112 90 85 182

Figure S3792.  Get High-res Image Gene #1390: 'FSTL4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'FSTL4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 8e-05 (Fisher's exact test), Q value = 0.0045

Table S14735.  Gene #1390: 'FSTL4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
FSTL4 MUTATED 1 2 9 1 0 1 3
FSTL4 WILD-TYPE 59 48 40 39 63 124 96

Figure S3793.  Get High-res Image Gene #1390: 'FSTL4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'FSTL4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0524 (Fisher's exact test), Q value = 0.25

Table S14736.  Gene #1390: 'FSTL4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
FSTL4 MUTATED 10 2 1 4
FSTL4 WILD-TYPE 120 76 67 192
'FSTL4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.33 (Fisher's exact test), Q value = 0.66

Table S14737.  Gene #1390: 'FSTL4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
FSTL4 MUTATED 4 4 1 1 3 1 1 1 1
FSTL4 WILD-TYPE 36 58 27 79 66 47 42 27 73
'FSTL4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.302 (Fisher's exact test), Q value = 0.63

Table S14738.  Gene #1390: 'FSTL4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
FSTL4 MUTATED 2 0 1 2
FSTL4 WILD-TYPE 31 31 26 17
'FSTL4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.757 (Fisher's exact test), Q value = 1

Table S14739.  Gene #1390: 'FSTL4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
FSTL4 MUTATED 4 0 1 0
FSTL4 WILD-TYPE 50 10 23 22
'PTPRG MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0187 (Fisher's exact test), Q value = 0.14

Table S14740.  Gene #1391: 'PTPRG MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
PTPRG MUTATED 4 0 1 4
PTPRG WILD-TYPE 42 58 63 39

Figure S3794.  Get High-res Image Gene #1391: 'PTPRG MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'PTPRG MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.057 (Fisher's exact test), Q value = 0.26

Table S14741.  Gene #1391: 'PTPRG MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
PTPRG MUTATED 5 1 3
PTPRG WILD-TYPE 46 82 74
'PTPRG MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00066 (Fisher's exact test), Q value = 0.019

Table S14742.  Gene #1391: 'PTPRG MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
PTPRG MUTATED 18 6 0 1
PTPRG WILD-TYPE 160 177 101 19

Figure S3795.  Get High-res Image Gene #1391: 'PTPRG MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'PTPRG MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0129 (Fisher's exact test), Q value = 0.11

Table S14743.  Gene #1391: 'PTPRG MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
PTPRG MUTATED 7 0 8
PTPRG WILD-TYPE 80 80 92

Figure S3796.  Get High-res Image Gene #1391: 'PTPRG MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'PTPRG MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.444 (Fisher's exact test), Q value = 0.77

Table S14744.  Gene #1391: 'PTPRG MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
PTPRG MUTATED 5 11 5
PTPRG WILD-TYPE 84 149 133
'PTPRG MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.46 (Fisher's exact test), Q value = 0.79

Table S14745.  Gene #1391: 'PTPRG MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
PTPRG MUTATED 8 10 3
PTPRG WILD-TYPE 174 123 69
'PTPRG MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.672 (Fisher's exact test), Q value = 0.95

Table S14746.  Gene #1391: 'PTPRG MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
PTPRG MUTATED 4 7 4 10
PTPRG WILD-TYPE 108 89 88 176
'PTPRG MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00185 (Fisher's exact test), Q value = 0.036

Table S14747.  Gene #1391: 'PTPRG MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
PTPRG MUTATED 4 5 6 0 0 2 8
PTPRG WILD-TYPE 56 45 43 40 63 123 91

Figure S3797.  Get High-res Image Gene #1391: 'PTPRG MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'PTPRG MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.11 (Fisher's exact test), Q value = 0.37

Table S14748.  Gene #1391: 'PTPRG MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
PTPRG MUTATED 9 5 0 9
PTPRG WILD-TYPE 121 73 68 187
'PTPRG MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0642 (Fisher's exact test), Q value = 0.28

Table S14749.  Gene #1391: 'PTPRG MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
PTPRG MUTATED 2 2 1 3 10 2 2 0 1
PTPRG WILD-TYPE 38 60 27 77 59 46 41 28 73
'PTPRG MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0788 (Fisher's exact test), Q value = 0.3

Table S14750.  Gene #1391: 'PTPRG MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
PTPRG MUTATED 3 0 0 2
PTPRG WILD-TYPE 30 31 27 17
'PTPRG MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.756 (Fisher's exact test), Q value = 1

Table S14751.  Gene #1391: 'PTPRG MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
PTPRG MUTATED 4 0 1 0
PTPRG WILD-TYPE 50 10 23 22
'ATF2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.905 (Fisher's exact test), Q value = 1

Table S14752.  Gene #1392: 'ATF2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ATF2 MUTATED 3 2 1 0
ATF2 WILD-TYPE 175 181 100 20
'ATF2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.629 (Fisher's exact test), Q value = 0.93

Table S14753.  Gene #1392: 'ATF2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ATF2 MUTATED 1 1 3
ATF2 WILD-TYPE 86 79 97
'ATF2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.795 (Fisher's exact test), Q value = 1

Table S14754.  Gene #1392: 'ATF2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ATF2 MUTATED 1 4 2
ATF2 WILD-TYPE 88 156 136
'ATF2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S14755.  Gene #1392: 'ATF2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ATF2 MUTATED 4 2 1
ATF2 WILD-TYPE 178 131 71
'ATF2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.366 (Fisher's exact test), Q value = 0.7

Table S14756.  Gene #1392: 'ATF2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ATF2 MUTATED 3 1 2 1
ATF2 WILD-TYPE 109 95 90 185
'ATF2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00278 (Fisher's exact test), Q value = 0.047

Table S14757.  Gene #1392: 'ATF2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ATF2 MUTATED 4 2 1 0 0 0 0
ATF2 WILD-TYPE 56 48 48 40 63 125 99

Figure S3798.  Get High-res Image Gene #1392: 'ATF2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ATF2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.31 (Fisher's exact test), Q value = 0.64

Table S14758.  Gene #1392: 'ATF2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ATF2 MUTATED 1 3 1 2
ATF2 WILD-TYPE 129 75 67 194
'ATF2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.685 (Fisher's exact test), Q value = 0.96

Table S14759.  Gene #1392: 'ATF2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ATF2 MUTATED 0 2 1 2 1 1 0 0 0
ATF2 WILD-TYPE 40 60 27 78 68 47 43 28 74
'CREG2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.562 (Fisher's exact test), Q value = 0.87

Table S14760.  Gene #1393: 'CREG2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
CREG2 MUTATED 1 2 2 0
CREG2 WILD-TYPE 177 181 99 20
'CREG2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S14761.  Gene #1393: 'CREG2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
CREG2 MUTATED 1 1 1
CREG2 WILD-TYPE 86 79 99
'CREG2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.34 (Fisher's exact test), Q value = 0.67

Table S14762.  Gene #1393: 'CREG2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
CREG2 MUTATED 1 0 2
CREG2 WILD-TYPE 88 160 136
'CREG2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.298 (Fisher's exact test), Q value = 0.63

Table S14763.  Gene #1393: 'CREG2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
CREG2 MUTATED 3 0 0
CREG2 WILD-TYPE 179 133 72
'CREG2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.823 (Fisher's exact test), Q value = 1

Table S14764.  Gene #1393: 'CREG2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
CREG2 MUTATED 2 1 0 2
CREG2 WILD-TYPE 110 95 92 184
'CREG2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.487 (Fisher's exact test), Q value = 0.81

Table S14765.  Gene #1393: 'CREG2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
CREG2 MUTATED 1 1 0 0 1 0 2
CREG2 WILD-TYPE 59 49 49 40 62 125 97
'CREG2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.744 (Fisher's exact test), Q value = 1

Table S14766.  Gene #1393: 'CREG2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
CREG2 MUTATED 2 0 1 2
CREG2 WILD-TYPE 128 78 67 194
'CREG2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.105 (Fisher's exact test), Q value = 0.36

Table S14767.  Gene #1393: 'CREG2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
CREG2 MUTATED 2 0 0 0 2 0 1 0 0
CREG2 WILD-TYPE 38 62 28 80 67 48 42 28 74
'GTF2A1L MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.785 (Fisher's exact test), Q value = 1

Table S14768.  Gene #1394: 'GTF2A1L MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
GTF2A1L MUTATED 2 2 2 3
GTF2A1L WILD-TYPE 44 56 62 40
'GTF2A1L MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.689 (Fisher's exact test), Q value = 0.97

Table S14769.  Gene #1394: 'GTF2A1L MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
GTF2A1L MUTATED 3 4 2
GTF2A1L WILD-TYPE 48 79 75
'GTF2A1L MUTATION STATUS' versus 'CN_CNMF'

P value = 0.155 (Fisher's exact test), Q value = 0.44

Table S14770.  Gene #1394: 'GTF2A1L MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
GTF2A1L MUTATED 6 8 4 3
GTF2A1L WILD-TYPE 172 175 97 17
'GTF2A1L MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.573 (Fisher's exact test), Q value = 0.88

Table S14771.  Gene #1394: 'GTF2A1L MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
GTF2A1L MUTATED 4 5 3
GTF2A1L WILD-TYPE 83 75 97
'GTF2A1L MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00675 (Fisher's exact test), Q value = 0.075

Table S14772.  Gene #1394: 'GTF2A1L MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
GTF2A1L MUTATED 8 6 1
GTF2A1L WILD-TYPE 81 154 137

Figure S3799.  Get High-res Image Gene #1394: 'GTF2A1L MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'GTF2A1L MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.691 (Fisher's exact test), Q value = 0.97

Table S14773.  Gene #1394: 'GTF2A1L MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
GTF2A1L MUTATED 6 5 4
GTF2A1L WILD-TYPE 176 128 68
'GTF2A1L MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.48 (Fisher's exact test), Q value = 0.81

Table S14774.  Gene #1394: 'GTF2A1L MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
GTF2A1L MUTATED 8 3 3 7
GTF2A1L WILD-TYPE 104 93 89 179
'GTF2A1L MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.95 (Fisher's exact test), Q value = 1

Table S14775.  Gene #1394: 'GTF2A1L MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
GTF2A1L MUTATED 4 2 2 2 3 5 3
GTF2A1L WILD-TYPE 56 48 47 38 60 120 96
'GTF2A1L MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.152 (Fisher's exact test), Q value = 0.44

Table S14776.  Gene #1394: 'GTF2A1L MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
GTF2A1L MUTATED 6 2 6 5
GTF2A1L WILD-TYPE 124 76 62 191
'GTF2A1L MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.626 (Fisher's exact test), Q value = 0.92

Table S14777.  Gene #1394: 'GTF2A1L MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
GTF2A1L MUTATED 1 3 2 3 3 1 4 1 1
GTF2A1L WILD-TYPE 39 59 26 77 66 47 39 27 73
'GTF2A1L MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.707 (Fisher's exact test), Q value = 0.98

Table S14778.  Gene #1394: 'GTF2A1L MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
GTF2A1L MUTATED 2 1 3 1
GTF2A1L WILD-TYPE 31 30 24 18
'GTF2A1L MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.78 (Fisher's exact test), Q value = 1

Table S14779.  Gene #1394: 'GTF2A1L MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
GTF2A1L MUTATED 3 0 2 2
GTF2A1L WILD-TYPE 51 10 22 20
'MALT1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00529 (Fisher's exact test), Q value = 0.066

Table S14780.  Gene #1395: 'MALT1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
MALT1 MUTATED 4 0 0 3
MALT1 WILD-TYPE 42 58 64 40

Figure S3800.  Get High-res Image Gene #1395: 'MALT1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'MALT1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0154 (Fisher's exact test), Q value = 0.12

Table S14781.  Gene #1395: 'MALT1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
MALT1 MUTATED 5 1 1
MALT1 WILD-TYPE 46 82 76

Figure S3801.  Get High-res Image Gene #1395: 'MALT1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'MALT1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0351 (Fisher's exact test), Q value = 0.19

Table S14782.  Gene #1395: 'MALT1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
MALT1 MUTATED 8 1 1 1
MALT1 WILD-TYPE 170 182 100 19

Figure S3802.  Get High-res Image Gene #1395: 'MALT1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'MALT1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.196 (Fisher's exact test), Q value = 0.5

Table S14783.  Gene #1395: 'MALT1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
MALT1 MUTATED 1 0 4
MALT1 WILD-TYPE 86 80 96
'MALT1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.389 (Fisher's exact test), Q value = 0.72

Table S14784.  Gene #1395: 'MALT1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
MALT1 MUTATED 3 3 1
MALT1 WILD-TYPE 86 157 137
'MALT1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.615 (Fisher's exact test), Q value = 0.91

Table S14785.  Gene #1395: 'MALT1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
MALT1 MUTATED 2 3 2
MALT1 WILD-TYPE 180 130 70
'MALT1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.165 (Fisher's exact test), Q value = 0.46

Table S14786.  Gene #1395: 'MALT1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
MALT1 MUTATED 0 3 2 7
MALT1 WILD-TYPE 112 93 90 179
'MALT1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0775 (Fisher's exact test), Q value = 0.3

Table S14787.  Gene #1395: 'MALT1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
MALT1 MUTATED 1 1 2 1 1 0 6
MALT1 WILD-TYPE 59 49 47 39 62 125 93
'MALT1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.321 (Fisher's exact test), Q value = 0.65

Table S14788.  Gene #1395: 'MALT1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
MALT1 MUTATED 3 1 0 8
MALT1 WILD-TYPE 127 77 68 188
'MALT1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0165 (Fisher's exact test), Q value = 0.13

Table S14789.  Gene #1395: 'MALT1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
MALT1 MUTATED 2 0 1 1 6 0 1 1 0
MALT1 WILD-TYPE 38 62 27 79 63 48 42 27 74

Figure S3803.  Get High-res Image Gene #1395: 'MALT1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'PSMD6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00471 (Fisher's exact test), Q value = 0.062

Table S14790.  Gene #1396: 'PSMD6 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
PSMD6 MUTATED 8 0 0 0
PSMD6 WILD-TYPE 170 183 101 20

Figure S3804.  Get High-res Image Gene #1396: 'PSMD6 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'PSMD6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.384 (Fisher's exact test), Q value = 0.71

Table S14791.  Gene #1396: 'PSMD6 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
PSMD6 MUTATED 1 1 4
PSMD6 WILD-TYPE 86 79 96
'PSMD6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.55 (Fisher's exact test), Q value = 0.87

Table S14792.  Gene #1396: 'PSMD6 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
PSMD6 MUTATED 0 3 1
PSMD6 WILD-TYPE 89 157 137
'PSMD6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.528 (Fisher's exact test), Q value = 0.85

Table S14793.  Gene #1396: 'PSMD6 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
PSMD6 MUTATED 1 2 1
PSMD6 WILD-TYPE 181 131 71
'PSMD6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.558 (Fisher's exact test), Q value = 0.87

Table S14794.  Gene #1396: 'PSMD6 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
PSMD6 MUTATED 1 3 2 2
PSMD6 WILD-TYPE 111 93 90 184
'PSMD6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.195 (Fisher's exact test), Q value = 0.5

Table S14795.  Gene #1396: 'PSMD6 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
PSMD6 MUTATED 2 1 2 1 1 0 1
PSMD6 WILD-TYPE 58 49 47 39 62 125 98
'PSMD6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.684 (Fisher's exact test), Q value = 0.96

Table S14796.  Gene #1396: 'PSMD6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
PSMD6 MUTATED 3 2 1 2
PSMD6 WILD-TYPE 127 76 67 194
'PSMD6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.154 (Fisher's exact test), Q value = 0.44

Table S14797.  Gene #1396: 'PSMD6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
PSMD6 MUTATED 1 2 0 0 3 0 2 0 0
PSMD6 WILD-TYPE 39 60 28 80 66 48 41 28 74
'DLEC1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.121 (Fisher's exact test), Q value = 0.39

Table S14798.  Gene #1397: 'DLEC1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
DLEC1 MUTATED 2 0 0 1
DLEC1 WILD-TYPE 44 58 64 42
'DLEC1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.254 (Fisher's exact test), Q value = 0.58

Table S14799.  Gene #1397: 'DLEC1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
DLEC1 MUTATED 2 1 0
DLEC1 WILD-TYPE 49 82 77
'DLEC1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0148 (Fisher's exact test), Q value = 0.12

Table S14800.  Gene #1397: 'DLEC1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
DLEC1 MUTATED 14 4 1 0
DLEC1 WILD-TYPE 164 179 100 20

Figure S3805.  Get High-res Image Gene #1397: 'DLEC1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'DLEC1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.445 (Fisher's exact test), Q value = 0.77

Table S14801.  Gene #1397: 'DLEC1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
DLEC1 MUTATED 4 3 8
DLEC1 WILD-TYPE 83 77 92
'DLEC1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S14802.  Gene #1397: 'DLEC1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
DLEC1 MUTATED 3 6 6
DLEC1 WILD-TYPE 86 154 132
'DLEC1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.69 (Fisher's exact test), Q value = 0.97

Table S14803.  Gene #1397: 'DLEC1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
DLEC1 MUTATED 6 5 4
DLEC1 WILD-TYPE 176 128 68
'DLEC1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.155 (Fisher's exact test), Q value = 0.44

Table S14804.  Gene #1397: 'DLEC1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
DLEC1 MUTATED 3 6 6 4
DLEC1 WILD-TYPE 109 90 86 182
'DLEC1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00409 (Fisher's exact test), Q value = 0.058

Table S14805.  Gene #1397: 'DLEC1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
DLEC1 MUTATED 2 1 6 3 3 0 4
DLEC1 WILD-TYPE 58 49 43 37 60 125 95

Figure S3806.  Get High-res Image Gene #1397: 'DLEC1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'DLEC1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.36 (Fisher's exact test), Q value = 0.69

Table S14806.  Gene #1397: 'DLEC1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
DLEC1 MUTATED 8 4 1 6
DLEC1 WILD-TYPE 122 74 67 190
'DLEC1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.129 (Fisher's exact test), Q value = 0.4

Table S14807.  Gene #1397: 'DLEC1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
DLEC1 MUTATED 3 6 1 2 4 1 1 1 0
DLEC1 WILD-TYPE 37 56 27 78 65 47 42 27 74
'DLEC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0573 (Fisher's exact test), Q value = 0.26

Table S14808.  Gene #1397: 'DLEC1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
DLEC1 MUTATED 0 1 1 3
DLEC1 WILD-TYPE 33 30 26 16
'DLEC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.428 (Fisher's exact test), Q value = 0.76

Table S14809.  Gene #1397: 'DLEC1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
DLEC1 MUTATED 3 1 0 1
DLEC1 WILD-TYPE 51 9 24 21
'DPP8 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00677 (Fisher's exact test), Q value = 0.075

Table S14810.  Gene #1398: 'DPP8 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
DPP8 MUTATED 4 0 0 2
DPP8 WILD-TYPE 42 58 64 41

Figure S3807.  Get High-res Image Gene #1398: 'DPP8 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'DPP8 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0229 (Fisher's exact test), Q value = 0.15

Table S14811.  Gene #1398: 'DPP8 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
DPP8 MUTATED 4 2 0
DPP8 WILD-TYPE 47 81 77

Figure S3808.  Get High-res Image Gene #1398: 'DPP8 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'DPP8 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00347 (Fisher's exact test), Q value = 0.054

Table S14812.  Gene #1398: 'DPP8 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
DPP8 MUTATED 12 1 1 0
DPP8 WILD-TYPE 166 182 100 20

Figure S3809.  Get High-res Image Gene #1398: 'DPP8 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'DPP8 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.287 (Fisher's exact test), Q value = 0.62

Table S14813.  Gene #1398: 'DPP8 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
DPP8 MUTATED 3 0 3
DPP8 WILD-TYPE 84 80 97
'DPP8 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.732 (Fisher's exact test), Q value = 1

Table S14814.  Gene #1398: 'DPP8 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
DPP8 MUTATED 2 6 3
DPP8 WILD-TYPE 87 154 135
'DPP8 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.337 (Fisher's exact test), Q value = 0.66

Table S14815.  Gene #1398: 'DPP8 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
DPP8 MUTATED 3 6 2
DPP8 WILD-TYPE 179 127 70
'DPP8 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0773 (Fisher's exact test), Q value = 0.3

Table S14816.  Gene #1398: 'DPP8 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
DPP8 MUTATED 0 3 2 9
DPP8 WILD-TYPE 112 93 90 177
'DPP8 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0754 (Fisher's exact test), Q value = 0.29

Table S14817.  Gene #1398: 'DPP8 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
DPP8 MUTATED 0 2 2 0 0 3 7
DPP8 WILD-TYPE 60 48 47 40 63 122 92
'DPP8 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.208 (Fisher's exact test), Q value = 0.52

Table S14818.  Gene #1398: 'DPP8 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
DPP8 MUTATED 4 0 1 9
DPP8 WILD-TYPE 126 78 67 187
'DPP8 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.301 (Fisher's exact test), Q value = 0.63

Table S14819.  Gene #1398: 'DPP8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
DPP8 MUTATED 0 2 2 1 5 1 0 1 2
DPP8 WILD-TYPE 40 60 26 79 64 47 43 27 72
'CAPRIN1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.373 (Fisher's exact test), Q value = 0.7

Table S14820.  Gene #1399: 'CAPRIN1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
CAPRIN1 MUTATED 2 1 0 1
CAPRIN1 WILD-TYPE 44 57 64 42
'CAPRIN1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.176 (Fisher's exact test), Q value = 0.48

Table S14821.  Gene #1399: 'CAPRIN1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
CAPRIN1 MUTATED 2 0 2
CAPRIN1 WILD-TYPE 49 83 75
'CAPRIN1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0542 (Fisher's exact test), Q value = 0.25

Table S14822.  Gene #1399: 'CAPRIN1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
CAPRIN1 MUTATED 8 3 0 1
CAPRIN1 WILD-TYPE 170 180 101 19
'CAPRIN1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00765 (Fisher's exact test), Q value = 0.082

Table S14823.  Gene #1399: 'CAPRIN1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
CAPRIN1 MUTATED 0 1 7
CAPRIN1 WILD-TYPE 87 79 93

Figure S3810.  Get High-res Image Gene #1399: 'CAPRIN1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'CAPRIN1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.327 (Fisher's exact test), Q value = 0.66

Table S14824.  Gene #1399: 'CAPRIN1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
CAPRIN1 MUTATED 1 7 3
CAPRIN1 WILD-TYPE 88 153 135
'CAPRIN1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.118 (Fisher's exact test), Q value = 0.38

Table S14825.  Gene #1399: 'CAPRIN1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
CAPRIN1 MUTATED 2 6 3
CAPRIN1 WILD-TYPE 180 127 69
'CAPRIN1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.612 (Fisher's exact test), Q value = 0.91

Table S14826.  Gene #1399: 'CAPRIN1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
CAPRIN1 MUTATED 1 3 3 5
CAPRIN1 WILD-TYPE 111 93 89 181
'CAPRIN1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0472 (Fisher's exact test), Q value = 0.23

Table S14827.  Gene #1399: 'CAPRIN1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
CAPRIN1 MUTATED 1 2 3 0 1 0 5
CAPRIN1 WILD-TYPE 59 48 46 40 62 125 94

Figure S3811.  Get High-res Image Gene #1399: 'CAPRIN1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CAPRIN1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.807 (Fisher's exact test), Q value = 1

Table S14828.  Gene #1399: 'CAPRIN1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
CAPRIN1 MUTATED 3 1 1 7
CAPRIN1 WILD-TYPE 127 77 67 189
'CAPRIN1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00231 (Fisher's exact test), Q value = 0.041

Table S14829.  Gene #1399: 'CAPRIN1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
CAPRIN1 MUTATED 1 0 0 2 8 0 1 0 0
CAPRIN1 WILD-TYPE 39 62 28 78 61 48 42 28 74

Figure S3812.  Get High-res Image Gene #1399: 'CAPRIN1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'MTA2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0184 (Fisher's exact test), Q value = 0.14

Table S14830.  Gene #1400: 'MTA2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
MTA2 MUTATED 4 0 1 0
MTA2 WILD-TYPE 42 58 63 43

Figure S3813.  Get High-res Image Gene #1400: 'MTA2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'MTA2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0188 (Fisher's exact test), Q value = 0.14

Table S14831.  Gene #1400: 'MTA2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
MTA2 MUTATED 4 1 0
MTA2 WILD-TYPE 47 82 77

Figure S3814.  Get High-res Image Gene #1400: 'MTA2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'MTA2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.226 (Fisher's exact test), Q value = 0.54

Table S14832.  Gene #1400: 'MTA2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
MTA2 MUTATED 8 2 2 0
MTA2 WILD-TYPE 170 181 99 20
'MTA2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.201 (Fisher's exact test), Q value = 0.51

Table S14833.  Gene #1400: 'MTA2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
MTA2 MUTATED 3 0 4
MTA2 WILD-TYPE 84 80 96
'MTA2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.294 (Fisher's exact test), Q value = 0.62

Table S14834.  Gene #1400: 'MTA2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
MTA2 MUTATED 4 2 4
MTA2 WILD-TYPE 85 158 134
'MTA2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0909 (Fisher's exact test), Q value = 0.33

Table S14835.  Gene #1400: 'MTA2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
MTA2 MUTATED 5 1 4
MTA2 WILD-TYPE 177 132 68
'MTA2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.612 (Fisher's exact test), Q value = 0.91

Table S14836.  Gene #1400: 'MTA2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
MTA2 MUTATED 1 3 3 5
MTA2 WILD-TYPE 111 93 89 181
'MTA2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0584 (Fisher's exact test), Q value = 0.26

Table S14837.  Gene #1400: 'MTA2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
MTA2 MUTATED 0 0 4 1 2 1 4
MTA2 WILD-TYPE 60 50 45 39 61 124 95
'MTA2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.975 (Fisher's exact test), Q value = 1

Table S14838.  Gene #1400: 'MTA2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
MTA2 MUTATED 3 2 1 6
MTA2 WILD-TYPE 127 76 67 190
'MTA2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00653 (Fisher's exact test), Q value = 0.074

Table S14839.  Gene #1400: 'MTA2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
MTA2 MUTATED 2 2 0 0 7 0 0 0 1
MTA2 WILD-TYPE 38 60 28 80 62 48 43 28 73

Figure S3815.  Get High-res Image Gene #1400: 'MTA2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'MTA2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.871 (Fisher's exact test), Q value = 1

Table S14840.  Gene #1400: 'MTA2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
MTA2 MUTATED 1 1 0 1
MTA2 WILD-TYPE 32 30 27 18
'MTA2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.56 (Fisher's exact test), Q value = 0.87

Table S14841.  Gene #1400: 'MTA2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
MTA2 MUTATED 3 0 0 0
MTA2 WILD-TYPE 51 10 24 22
'GFRA4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.277 (Fisher's exact test), Q value = 0.6

Table S14842.  Gene #1401: 'GFRA4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
GFRA4 MUTATED 3 0 0 0
GFRA4 WILD-TYPE 175 183 101 20
'GFRA4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S14843.  Gene #1401: 'GFRA4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
GFRA4 MUTATED 1 1 1
GFRA4 WILD-TYPE 88 159 137
'GFRA4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.77 (Fisher's exact test), Q value = 1

Table S14844.  Gene #1401: 'GFRA4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
GFRA4 MUTATED 1 1 1
GFRA4 WILD-TYPE 181 132 71
'GFRA4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.694 (Fisher's exact test), Q value = 0.97

Table S14845.  Gene #1401: 'GFRA4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
GFRA4 MUTATED 0 1 0 2
GFRA4 WILD-TYPE 112 95 92 184
'GFRA4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.313 (Fisher's exact test), Q value = 0.64

Table S14846.  Gene #1401: 'GFRA4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
GFRA4 MUTATED 0 1 0 0 0 0 2
GFRA4 WILD-TYPE 60 49 49 40 63 125 97
'GFRA4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S14847.  Gene #1401: 'GFRA4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
GFRA4 MUTATED 1 0 0 2
GFRA4 WILD-TYPE 129 78 68 194
'GFRA4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.508 (Fisher's exact test), Q value = 0.83

Table S14848.  Gene #1401: 'GFRA4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
GFRA4 MUTATED 0 0 1 0 1 0 0 0 1
GFRA4 WILD-TYPE 40 62 27 80 68 48 43 28 73
'FGD4 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S14849.  Gene #1402: 'FGD4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
FGD4 MUTATED 1 1 1 1
FGD4 WILD-TYPE 45 57 63 42
'FGD4 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.457 (Fisher's exact test), Q value = 0.78

Table S14850.  Gene #1402: 'FGD4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
FGD4 MUTATED 0 3 1
FGD4 WILD-TYPE 51 80 76
'FGD4 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S14851.  Gene #1402: 'FGD4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
FGD4 MUTATED 4 4 2 0
FGD4 WILD-TYPE 174 179 99 20
'FGD4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S14852.  Gene #1402: 'FGD4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
FGD4 MUTATED 2 2 2
FGD4 WILD-TYPE 85 78 98
'FGD4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.831 (Fisher's exact test), Q value = 1

Table S14853.  Gene #1402: 'FGD4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
FGD4 MUTATED 1 4 4
FGD4 WILD-TYPE 88 156 134
'FGD4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S14854.  Gene #1402: 'FGD4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
FGD4 MUTATED 5 3 1
FGD4 WILD-TYPE 177 130 71
'FGD4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.69 (Fisher's exact test), Q value = 0.97

Table S14855.  Gene #1402: 'FGD4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
FGD4 MUTATED 1 2 3 4
FGD4 WILD-TYPE 111 94 89 182
'FGD4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.558 (Fisher's exact test), Q value = 0.87

Table S14856.  Gene #1402: 'FGD4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
FGD4 MUTATED 3 1 1 1 0 3 1
FGD4 WILD-TYPE 57 49 48 39 63 122 98
'FGD4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.829 (Fisher's exact test), Q value = 1

Table S14857.  Gene #1402: 'FGD4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
FGD4 MUTATED 2 1 2 5
FGD4 WILD-TYPE 128 77 66 191
'FGD4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.974 (Fisher's exact test), Q value = 1

Table S14858.  Gene #1402: 'FGD4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
FGD4 MUTATED 1 1 0 2 2 1 2 0 1
FGD4 WILD-TYPE 39 61 28 78 67 47 41 28 73
'FGD4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S14859.  Gene #1402: 'FGD4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
FGD4 MUTATED 1 1 1 1
FGD4 WILD-TYPE 32 30 26 18
'FGD4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.319 (Fisher's exact test), Q value = 0.65

Table S14860.  Gene #1402: 'FGD4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
FGD4 MUTATED 1 0 1 2
FGD4 WILD-TYPE 53 10 23 20
'HPS6 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0643 (Fisher's exact test), Q value = 0.28

Table S14861.  Gene #1403: 'HPS6 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
HPS6 MUTATED 1 0 0 2
HPS6 WILD-TYPE 45 58 64 41
'HPS6 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.184 (Fisher's exact test), Q value = 0.48

Table S14862.  Gene #1403: 'HPS6 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
HPS6 MUTATED 2 0 1
HPS6 WILD-TYPE 49 83 76
'HPS6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0604 (Fisher's exact test), Q value = 0.27

Table S14863.  Gene #1403: 'HPS6 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
HPS6 MUTATED 6 0 1 0
HPS6 WILD-TYPE 172 183 100 20
'HPS6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.113 (Fisher's exact test), Q value = 0.37

Table S14864.  Gene #1403: 'HPS6 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
HPS6 MUTATED 0 0 3
HPS6 WILD-TYPE 87 80 97
'HPS6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.159 (Fisher's exact test), Q value = 0.45

Table S14865.  Gene #1403: 'HPS6 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
HPS6 MUTATED 0 5 1
HPS6 WILD-TYPE 89 155 137
'HPS6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.206 (Fisher's exact test), Q value = 0.51

Table S14866.  Gene #1403: 'HPS6 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
HPS6 MUTATED 1 4 1
HPS6 WILD-TYPE 181 129 71
'HPS6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.474 (Fisher's exact test), Q value = 0.8

Table S14867.  Gene #1403: 'HPS6 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
HPS6 MUTATED 0 2 1 4
HPS6 WILD-TYPE 112 94 91 182
'HPS6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.183 (Fisher's exact test), Q value = 0.48

Table S14868.  Gene #1403: 'HPS6 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
HPS6 MUTATED 1 0 3 0 0 1 2
HPS6 WILD-TYPE 59 50 46 40 63 124 97
'HPS6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.795 (Fisher's exact test), Q value = 1

Table S14869.  Gene #1403: 'HPS6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
HPS6 MUTATED 2 0 1 4
HPS6 WILD-TYPE 128 78 67 192
'HPS6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0149 (Fisher's exact test), Q value = 0.12

Table S14870.  Gene #1403: 'HPS6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
HPS6 MUTATED 1 0 0 0 5 1 0 0 0
HPS6 WILD-TYPE 39 62 28 80 64 47 43 28 74

Figure S3816.  Get High-res Image Gene #1403: 'HPS6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'AP4B1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0781 (Fisher's exact test), Q value = 0.3

Table S14871.  Gene #1404: 'AP4B1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
AP4B1 MUTATED 8 1 3 0
AP4B1 WILD-TYPE 170 182 98 20
'AP4B1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.721 (Fisher's exact test), Q value = 0.99

Table S14872.  Gene #1404: 'AP4B1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
AP4B1 MUTATED 3 2 5
AP4B1 WILD-TYPE 84 78 95
'AP4B1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.381 (Fisher's exact test), Q value = 0.71

Table S14873.  Gene #1404: 'AP4B1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
AP4B1 MUTATED 1 6 2
AP4B1 WILD-TYPE 88 154 136
'AP4B1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0547 (Fisher's exact test), Q value = 0.25

Table S14874.  Gene #1404: 'AP4B1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
AP4B1 MUTATED 1 6 2
AP4B1 WILD-TYPE 181 127 70
'AP4B1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.569 (Fisher's exact test), Q value = 0.88

Table S14875.  Gene #1404: 'AP4B1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
AP4B1 MUTATED 3 4 2 3
AP4B1 WILD-TYPE 109 92 90 183
'AP4B1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0559 (Fisher's exact test), Q value = 0.26

Table S14876.  Gene #1404: 'AP4B1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
AP4B1 MUTATED 2 1 4 1 1 0 3
AP4B1 WILD-TYPE 58 49 45 39 62 125 96
'AP4B1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.477 (Fisher's exact test), Q value = 0.81

Table S14877.  Gene #1404: 'AP4B1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
AP4B1 MUTATED 6 1 1 4
AP4B1 WILD-TYPE 124 77 67 192
'AP4B1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0173 (Fisher's exact test), Q value = 0.13

Table S14878.  Gene #1404: 'AP4B1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
AP4B1 MUTATED 4 1 3 1 2 0 0 0 1
AP4B1 WILD-TYPE 36 61 25 79 67 48 43 28 73

Figure S3817.  Get High-res Image Gene #1404: 'AP4B1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'STK38 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0722 (Fisher's exact test), Q value = 0.29

Table S14879.  Gene #1405: 'STK38 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
STK38 MUTATED 7 3 0 1
STK38 WILD-TYPE 171 180 101 19
'STK38 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.114 (Fisher's exact test), Q value = 0.37

Table S14880.  Gene #1405: 'STK38 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
STK38 MUTATED 4 0 5
STK38 WILD-TYPE 83 80 95
'STK38 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.463 (Fisher's exact test), Q value = 0.79

Table S14881.  Gene #1405: 'STK38 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
STK38 MUTATED 2 6 2
STK38 WILD-TYPE 87 154 136
'STK38 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0792 (Fisher's exact test), Q value = 0.3

Table S14882.  Gene #1405: 'STK38 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
STK38 MUTATED 2 4 4
STK38 WILD-TYPE 180 129 68
'STK38 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00936 (Fisher's exact test), Q value = 0.091

Table S14883.  Gene #1405: 'STK38 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
STK38 MUTATED 0 6 3 2
STK38 WILD-TYPE 112 90 89 184

Figure S3818.  Get High-res Image Gene #1405: 'STK38 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'STK38 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00577 (Fisher's exact test), Q value = 0.069

Table S14884.  Gene #1405: 'STK38 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
STK38 MUTATED 1 5 1 2 1 1 0
STK38 WILD-TYPE 59 45 48 38 62 124 99

Figure S3819.  Get High-res Image Gene #1405: 'STK38 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'STK38 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.184 (Fisher's exact test), Q value = 0.48

Table S14885.  Gene #1405: 'STK38 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
STK38 MUTATED 6 2 1 2
STK38 WILD-TYPE 124 76 67 194
'STK38 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.141 (Fisher's exact test), Q value = 0.42

Table S14886.  Gene #1405: 'STK38 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
STK38 MUTATED 2 1 1 1 1 0 4 0 1
STK38 WILD-TYPE 38 61 27 79 68 48 39 28 73
'STK38 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.146 (Fisher's exact test), Q value = 0.43

Table S14887.  Gene #1405: 'STK38 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
STK38 MUTATED 3 0 0 1
STK38 WILD-TYPE 30 31 27 18
'STK38 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.768 (Fisher's exact test), Q value = 1

Table S14888.  Gene #1405: 'STK38 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
STK38 MUTATED 3 0 0 1
STK38 WILD-TYPE 51 10 24 21
'PRKCD MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0175 (Fisher's exact test), Q value = 0.13

Table S14889.  Gene #1406: 'PRKCD MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
PRKCD MUTATED 3 0 0 0
PRKCD WILD-TYPE 43 58 64 43

Figure S3820.  Get High-res Image Gene #1406: 'PRKCD MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'PRKCD MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.253 (Fisher's exact test), Q value = 0.58

Table S14890.  Gene #1406: 'PRKCD MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
PRKCD MUTATED 2 1 0
PRKCD WILD-TYPE 49 82 77
'PRKCD MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00106 (Fisher's exact test), Q value = 0.026

Table S14891.  Gene #1406: 'PRKCD MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
PRKCD MUTATED 11 0 1 0
PRKCD WILD-TYPE 167 183 100 20

Figure S3821.  Get High-res Image Gene #1406: 'PRKCD MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'PRKCD MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0763 (Fisher's exact test), Q value = 0.3

Table S14892.  Gene #1406: 'PRKCD MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
PRKCD MUTATED 3 0 6
PRKCD WILD-TYPE 84 80 94
'PRKCD MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0261 (Fisher's exact test), Q value = 0.16

Table S14893.  Gene #1406: 'PRKCD MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
PRKCD MUTATED 0 3 8
PRKCD WILD-TYPE 89 157 130

Figure S3822.  Get High-res Image Gene #1406: 'PRKCD MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'PRKCD MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.561 (Fisher's exact test), Q value = 0.87

Table S14894.  Gene #1406: 'PRKCD MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
PRKCD MUTATED 7 3 1
PRKCD WILD-TYPE 175 130 71
'PRKCD MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0452 (Fisher's exact test), Q value = 0.23

Table S14895.  Gene #1406: 'PRKCD MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
PRKCD MUTATED 0 4 5 4
PRKCD WILD-TYPE 112 92 87 182

Figure S3823.  Get High-res Image Gene #1406: 'PRKCD MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'PRKCD MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00926 (Fisher's exact test), Q value = 0.09

Table S14896.  Gene #1406: 'PRKCD MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
PRKCD MUTATED 0 2 5 2 0 1 3
PRKCD WILD-TYPE 60 48 44 38 63 124 96

Figure S3824.  Get High-res Image Gene #1406: 'PRKCD MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'PRKCD MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.332 (Fisher's exact test), Q value = 0.66

Table S14897.  Gene #1406: 'PRKCD MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
PRKCD MUTATED 6 2 0 5
PRKCD WILD-TYPE 124 76 68 191
'PRKCD MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0146 (Fisher's exact test), Q value = 0.12

Table S14898.  Gene #1406: 'PRKCD MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
PRKCD MUTATED 3 4 0 1 5 0 0 0 0
PRKCD WILD-TYPE 37 58 28 79 64 48 43 28 74

Figure S3825.  Get High-res Image Gene #1406: 'PRKCD MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'HIST1H2BC MUTATION STATUS' versus 'CN_CNMF'

P value = 0.341 (Fisher's exact test), Q value = 0.67

Table S14899.  Gene #1407: 'HIST1H2BC MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
HIST1H2BC MUTATED 3 0 1 0
HIST1H2BC WILD-TYPE 175 183 100 20
'HIST1H2BC MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.778 (Fisher's exact test), Q value = 1

Table S14900.  Gene #1407: 'HIST1H2BC MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
HIST1H2BC MUTATED 1 0 2
HIST1H2BC WILD-TYPE 86 80 98
'HIST1H2BC MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.554 (Fisher's exact test), Q value = 0.87

Table S14901.  Gene #1407: 'HIST1H2BC MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
HIST1H2BC MUTATED 0 3 1
HIST1H2BC WILD-TYPE 89 157 137
'HIST1H2BC MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.329 (Fisher's exact test), Q value = 0.66

Table S14902.  Gene #1407: 'HIST1H2BC MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
HIST1H2BC MUTATED 1 3 0
HIST1H2BC WILD-TYPE 181 130 72
'HIST1H2BC MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.762 (Fisher's exact test), Q value = 1

Table S14903.  Gene #1407: 'HIST1H2BC MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
HIST1H2BC MUTATED 0 1 1 2
HIST1H2BC WILD-TYPE 112 95 91 184
'HIST1H2BC MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0954 (Fisher's exact test), Q value = 0.34

Table S14904.  Gene #1407: 'HIST1H2BC MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
HIST1H2BC MUTATED 0 0 2 0 0 0 2
HIST1H2BC WILD-TYPE 60 50 47 40 63 125 97
'HIST1H2BC MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.747 (Fisher's exact test), Q value = 1

Table S14905.  Gene #1407: 'HIST1H2BC MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
HIST1H2BC MUTATED 2 0 0 2
HIST1H2BC WILD-TYPE 128 78 68 194
'HIST1H2BC MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.432 (Fisher's exact test), Q value = 0.76

Table S14906.  Gene #1407: 'HIST1H2BC MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
HIST1H2BC MUTATED 1 0 1 0 1 0 0 0 1
HIST1H2BC WILD-TYPE 39 62 27 80 68 48 43 28 73
'RIMS2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00169 (Fisher's exact test), Q value = 0.034

Table S14907.  Gene #1408: 'RIMS2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
RIMS2 MUTATED 5 0 1 6
RIMS2 WILD-TYPE 41 58 63 37

Figure S3826.  Get High-res Image Gene #1408: 'RIMS2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'RIMS2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.093 (Fisher's exact test), Q value = 0.33

Table S14908.  Gene #1408: 'RIMS2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
RIMS2 MUTATED 6 2 4
RIMS2 WILD-TYPE 45 81 73
'RIMS2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0236 (Fisher's exact test), Q value = 0.16

Table S14909.  Gene #1408: 'RIMS2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
RIMS2 MUTATED 24 9 6 1
RIMS2 WILD-TYPE 154 174 95 19

Figure S3827.  Get High-res Image Gene #1408: 'RIMS2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'RIMS2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.539 (Fisher's exact test), Q value = 0.86

Table S14910.  Gene #1408: 'RIMS2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
RIMS2 MUTATED 11 6 11
RIMS2 WILD-TYPE 76 74 89
'RIMS2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.131 (Fisher's exact test), Q value = 0.4

Table S14911.  Gene #1408: 'RIMS2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
RIMS2 MUTATED 4 11 16
RIMS2 WILD-TYPE 85 149 122
'RIMS2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.399 (Fisher's exact test), Q value = 0.72

Table S14912.  Gene #1408: 'RIMS2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
RIMS2 MUTATED 17 11 3
RIMS2 WILD-TYPE 165 122 69
'RIMS2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.133 (Fisher's exact test), Q value = 0.41

Table S14913.  Gene #1408: 'RIMS2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
RIMS2 MUTATED 9 13 8 10
RIMS2 WILD-TYPE 103 83 84 176
'RIMS2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00111 (Fisher's exact test), Q value = 0.026

Table S14914.  Gene #1408: 'RIMS2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
RIMS2 MUTATED 9 6 9 2 3 2 9
RIMS2 WILD-TYPE 51 44 40 38 60 123 90

Figure S3828.  Get High-res Image Gene #1408: 'RIMS2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'RIMS2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0881 (Fisher's exact test), Q value = 0.32

Table S14915.  Gene #1408: 'RIMS2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
RIMS2 MUTATED 16 8 2 13
RIMS2 WILD-TYPE 114 70 66 183
'RIMS2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.515 (Fisher's exact test), Q value = 0.84

Table S14916.  Gene #1408: 'RIMS2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
RIMS2 MUTATED 5 5 2 6 9 4 3 3 2
RIMS2 WILD-TYPE 35 57 26 74 60 44 40 25 72
'RIMS2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.428 (Fisher's exact test), Q value = 0.75

Table S14917.  Gene #1408: 'RIMS2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
RIMS2 MUTATED 3 2 2 4
RIMS2 WILD-TYPE 30 29 25 15
'RIMS2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.896 (Fisher's exact test), Q value = 1

Table S14918.  Gene #1408: 'RIMS2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
RIMS2 MUTATED 6 0 3 2
RIMS2 WILD-TYPE 48 10 21 20
'LEMD1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.279 (Fisher's exact test), Q value = 0.61

Table S14919.  Gene #1409: 'LEMD1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
LEMD1 MUTATED 3 0 0 0
LEMD1 WILD-TYPE 175 183 101 20
'LEMD1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.113 (Fisher's exact test), Q value = 0.37

Table S14920.  Gene #1409: 'LEMD1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
LEMD1 MUTATED 0 0 3
LEMD1 WILD-TYPE 87 80 97
'LEMD1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0697 (Fisher's exact test), Q value = 0.28

Table S14921.  Gene #1409: 'LEMD1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
LEMD1 MUTATED 0 2 1 0
LEMD1 WILD-TYPE 112 94 91 186
'LEMD1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00163 (Fisher's exact test), Q value = 0.033

Table S14922.  Gene #1409: 'LEMD1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
LEMD1 MUTATED 0 0 3 0 0 0 0
LEMD1 WILD-TYPE 60 50 46 40 63 125 99

Figure S3829.  Get High-res Image Gene #1409: 'LEMD1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'LEMD1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.857 (Fisher's exact test), Q value = 1

Table S14923.  Gene #1409: 'LEMD1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
LEMD1 MUTATED 1 1 0 1
LEMD1 WILD-TYPE 129 77 68 195
'LEMD1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.618 (Fisher's exact test), Q value = 0.92

Table S14924.  Gene #1409: 'LEMD1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
LEMD1 MUTATED 1 1 0 0 1 0 0 0 0
LEMD1 WILD-TYPE 39 61 28 80 68 48 43 28 74
'RC3H2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.488 (Fisher's exact test), Q value = 0.81

Table S14925.  Gene #1410: 'RC3H2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
RC3H2 MUTATED 6 2 2 0
RC3H2 WILD-TYPE 172 181 99 20
'RC3H2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.604 (Fisher's exact test), Q value = 0.91

Table S14926.  Gene #1410: 'RC3H2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
RC3H2 MUTATED 3 1 4
RC3H2 WILD-TYPE 84 79 96
'RC3H2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.659 (Fisher's exact test), Q value = 0.95

Table S14927.  Gene #1410: 'RC3H2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
RC3H2 MUTATED 2 3 5
RC3H2 WILD-TYPE 87 157 133
'RC3H2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.696 (Fisher's exact test), Q value = 0.97

Table S14928.  Gene #1410: 'RC3H2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
RC3H2 MUTATED 6 2 2
RC3H2 WILD-TYPE 176 131 70
'RC3H2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.201 (Fisher's exact test), Q value = 0.51

Table S14929.  Gene #1410: 'RC3H2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
RC3H2 MUTATED 1 3 4 2
RC3H2 WILD-TYPE 111 93 88 184
'RC3H2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.03 (Fisher's exact test), Q value = 0.18

Table S14930.  Gene #1410: 'RC3H2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
RC3H2 MUTATED 1 2 3 0 3 0 1
RC3H2 WILD-TYPE 59 48 46 40 60 125 98

Figure S3830.  Get High-res Image Gene #1410: 'RC3H2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'RC3H2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0796 (Fisher's exact test), Q value = 0.3

Table S14931.  Gene #1410: 'RC3H2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
RC3H2 MUTATED 4 4 0 2
RC3H2 WILD-TYPE 126 74 68 194
'RC3H2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.254 (Fisher's exact test), Q value = 0.58

Table S14932.  Gene #1410: 'RC3H2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
RC3H2 MUTATED 1 2 1 0 3 1 2 0 0
RC3H2 WILD-TYPE 39 60 27 80 66 47 41 28 74
'RC3H2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.553 (Fisher's exact test), Q value = 0.87

Table S14933.  Gene #1410: 'RC3H2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
RC3H2 MUTATED 1 2 0 0
RC3H2 WILD-TYPE 32 29 27 19
'RC3H2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.84 (Fisher's exact test), Q value = 1

Table S14934.  Gene #1410: 'RC3H2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
RC3H2 MUTATED 2 0 0 1
RC3H2 WILD-TYPE 52 10 24 21
'ZFYVE16 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.282 (Fisher's exact test), Q value = 0.61

Table S14935.  Gene #1411: 'ZFYVE16 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ZFYVE16 MUTATED 3 1 1 3
ZFYVE16 WILD-TYPE 43 57 63 40
'ZFYVE16 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.376 (Fisher's exact test), Q value = 0.71

Table S14936.  Gene #1411: 'ZFYVE16 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ZFYVE16 MUTATED 3 4 1
ZFYVE16 WILD-TYPE 48 79 76
'ZFYVE16 MUTATION STATUS' versus 'CN_CNMF'

P value = 3e-05 (Fisher's exact test), Q value = 0.0022

Table S14937.  Gene #1411: 'ZFYVE16 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ZFYVE16 MUTATED 17 2 0 0
ZFYVE16 WILD-TYPE 161 181 101 20

Figure S3831.  Get High-res Image Gene #1411: 'ZFYVE16 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ZFYVE16 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.15 (Fisher's exact test), Q value = 0.43

Table S14938.  Gene #1411: 'ZFYVE16 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ZFYVE16 MUTATED 3 1 7
ZFYVE16 WILD-TYPE 84 79 93
'ZFYVE16 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0558 (Fisher's exact test), Q value = 0.26

Table S14939.  Gene #1411: 'ZFYVE16 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ZFYVE16 MUTATED 0 7 8
ZFYVE16 WILD-TYPE 89 153 130
'ZFYVE16 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.146 (Fisher's exact test), Q value = 0.43

Table S14940.  Gene #1411: 'ZFYVE16 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ZFYVE16 MUTATED 8 7 0
ZFYVE16 WILD-TYPE 174 126 72
'ZFYVE16 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0183 (Fisher's exact test), Q value = 0.14

Table S14941.  Gene #1411: 'ZFYVE16 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ZFYVE16 MUTATED 0 4 7 8
ZFYVE16 WILD-TYPE 112 92 85 178

Figure S3832.  Get High-res Image Gene #1411: 'ZFYVE16 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'ZFYVE16 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00795 (Fisher's exact test), Q value = 0.083

Table S14942.  Gene #1411: 'ZFYVE16 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ZFYVE16 MUTATED 1 1 8 0 2 3 4
ZFYVE16 WILD-TYPE 59 49 41 40 61 122 95

Figure S3833.  Get High-res Image Gene #1411: 'ZFYVE16 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ZFYVE16 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.344 (Fisher's exact test), Q value = 0.67

Table S14943.  Gene #1411: 'ZFYVE16 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ZFYVE16 MUTATED 6 3 0 8
ZFYVE16 WILD-TYPE 124 75 68 188
'ZFYVE16 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.209 (Fisher's exact test), Q value = 0.52

Table S14944.  Gene #1411: 'ZFYVE16 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ZFYVE16 MUTATED 2 5 1 2 5 0 0 0 2
ZFYVE16 WILD-TYPE 38 57 27 78 64 48 43 28 72
'APOBEC4 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00379 (Fisher's exact test), Q value = 0.056

Table S14945.  Gene #1412: 'APOBEC4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
APOBEC4 MUTATED 1 0 0 4
APOBEC4 WILD-TYPE 45 58 64 39

Figure S3834.  Get High-res Image Gene #1412: 'APOBEC4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'APOBEC4 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.638 (Fisher's exact test), Q value = 0.93

Table S14946.  Gene #1412: 'APOBEC4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
APOBEC4 MUTATED 2 1 2
APOBEC4 WILD-TYPE 49 82 75
'APOBEC4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00467 (Fisher's exact test), Q value = 0.062

Table S14947.  Gene #1412: 'APOBEC4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
APOBEC4 MUTATED 8 0 0 0
APOBEC4 WILD-TYPE 170 183 101 20

Figure S3835.  Get High-res Image Gene #1412: 'APOBEC4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'APOBEC4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.206 (Fisher's exact test), Q value = 0.51

Table S14948.  Gene #1412: 'APOBEC4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
APOBEC4 MUTATED 3 0 1
APOBEC4 WILD-TYPE 84 80 99
'APOBEC4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.275 (Fisher's exact test), Q value = 0.6

Table S14949.  Gene #1412: 'APOBEC4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
APOBEC4 MUTATED 0 5 3
APOBEC4 WILD-TYPE 89 155 135
'APOBEC4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S14950.  Gene #1412: 'APOBEC4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
APOBEC4 MUTATED 4 3 1
APOBEC4 WILD-TYPE 178 130 71
'APOBEC4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.374 (Fisher's exact test), Q value = 0.7

Table S14951.  Gene #1412: 'APOBEC4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
APOBEC4 MUTATED 0 2 2 5
APOBEC4 WILD-TYPE 112 94 90 181
'APOBEC4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0504 (Fisher's exact test), Q value = 0.24

Table S14952.  Gene #1412: 'APOBEC4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
APOBEC4 MUTATED 1 0 3 0 1 0 4
APOBEC4 WILD-TYPE 59 50 46 40 62 125 95
'APOBEC4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.693 (Fisher's exact test), Q value = 0.97

Table S14953.  Gene #1412: 'APOBEC4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
APOBEC4 MUTATED 2 2 0 5
APOBEC4 WILD-TYPE 128 76 68 191
'APOBEC4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0272 (Fisher's exact test), Q value = 0.17

Table S14954.  Gene #1412: 'APOBEC4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
APOBEC4 MUTATED 1 2 2 0 4 0 0 0 0
APOBEC4 WILD-TYPE 39 60 26 80 65 48 43 28 74

Figure S3836.  Get High-res Image Gene #1412: 'APOBEC4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'ARID5A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.208 (Fisher's exact test), Q value = 0.52

Table S14955.  Gene #1413: 'ARID5A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ARID5A MUTATED 6 1 1 0
ARID5A WILD-TYPE 172 182 100 20
'ARID5A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.636 (Fisher's exact test), Q value = 0.93

Table S14956.  Gene #1413: 'ARID5A MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ARID5A MUTATED 2 1 4
ARID5A WILD-TYPE 85 79 96
'ARID5A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.616 (Fisher's exact test), Q value = 0.91

Table S14957.  Gene #1413: 'ARID5A MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ARID5A MUTATED 1 2 4
ARID5A WILD-TYPE 88 158 134
'ARID5A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.19 (Fisher's exact test), Q value = 0.49

Table S14958.  Gene #1413: 'ARID5A MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ARID5A MUTATED 6 1 0
ARID5A WILD-TYPE 176 132 72
'ARID5A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.145 (Fisher's exact test), Q value = 0.42

Table S14959.  Gene #1413: 'ARID5A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ARID5A MUTATED 1 3 3 1
ARID5A WILD-TYPE 111 93 89 185
'ARID5A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00186 (Fisher's exact test), Q value = 0.036

Table S14960.  Gene #1413: 'ARID5A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ARID5A MUTATED 1 1 5 0 0 1 0
ARID5A WILD-TYPE 59 49 44 40 63 124 99

Figure S3837.  Get High-res Image Gene #1413: 'ARID5A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ARID5A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.205 (Fisher's exact test), Q value = 0.51

Table S14961.  Gene #1413: 'ARID5A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ARID5A MUTATED 5 1 0 2
ARID5A WILD-TYPE 125 77 68 194
'ARID5A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.504 (Fisher's exact test), Q value = 0.83

Table S14962.  Gene #1413: 'ARID5A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ARID5A MUTATED 0 3 1 1 1 1 1 0 0
ARID5A WILD-TYPE 40 59 27 79 68 47 42 28 74
'ARID5A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00446 (Fisher's exact test), Q value = 0.061

Table S14963.  Gene #1413: 'ARID5A MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
ARID5A MUTATED 0 0 0 3
ARID5A WILD-TYPE 33 31 27 16

Figure S3838.  Get High-res Image Gene #1413: 'ARID5A MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'ARID5A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.562 (Fisher's exact test), Q value = 0.87

Table S14964.  Gene #1413: 'ARID5A MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
ARID5A MUTATED 3 0 0 0
ARID5A WILD-TYPE 51 10 24 22
'CYP2C18 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.716 (Fisher's exact test), Q value = 0.99

Table S14965.  Gene #1414: 'CYP2C18 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
CYP2C18 MUTATED 4 2 1 0
CYP2C18 WILD-TYPE 174 181 100 20
'CYP2C18 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S14966.  Gene #1414: 'CYP2C18 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
CYP2C18 MUTATED 2 1 2
CYP2C18 WILD-TYPE 85 79 98
'CYP2C18 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S14967.  Gene #1414: 'CYP2C18 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
CYP2C18 MUTATED 1 2 2
CYP2C18 WILD-TYPE 88 158 136
'CYP2C18 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.717 (Fisher's exact test), Q value = 0.99

Table S14968.  Gene #1414: 'CYP2C18 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
CYP2C18 MUTATED 3 2 0
CYP2C18 WILD-TYPE 179 131 72
'CYP2C18 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.833 (Fisher's exact test), Q value = 1

Table S14969.  Gene #1414: 'CYP2C18 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
CYP2C18 MUTATED 2 2 1 2
CYP2C18 WILD-TYPE 110 94 91 184
'CYP2C18 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.253 (Fisher's exact test), Q value = 0.58

Table S14970.  Gene #1414: 'CYP2C18 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
CYP2C18 MUTATED 1 1 2 1 1 0 1
CYP2C18 WILD-TYPE 59 49 47 39 62 125 98
'CYP2C18 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.481 (Fisher's exact test), Q value = 0.81

Table S14971.  Gene #1414: 'CYP2C18 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
CYP2C18 MUTATED 3 2 0 2
CYP2C18 WILD-TYPE 127 76 68 194
'CYP2C18 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.128 (Fisher's exact test), Q value = 0.4

Table S14972.  Gene #1414: 'CYP2C18 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
CYP2C18 MUTATED 1 3 1 0 2 0 0 0 0
CYP2C18 WILD-TYPE 39 59 27 80 67 48 43 28 74
'CYP2C18 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.872 (Fisher's exact test), Q value = 1

Table S14973.  Gene #1414: 'CYP2C18 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
CYP2C18 MUTATED 1 1 0 1
CYP2C18 WILD-TYPE 32 30 27 18
'CYP2C18 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S14974.  Gene #1414: 'CYP2C18 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
CYP2C18 MUTATED 2 0 1 0
CYP2C18 WILD-TYPE 52 10 23 22
'BEND2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00063 (Fisher's exact test), Q value = 0.018

Table S14975.  Gene #1415: 'BEND2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
BEND2 MUTATED 7 1 0 1
BEND2 WILD-TYPE 39 57 64 42

Figure S3839.  Get High-res Image Gene #1415: 'BEND2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'BEND2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00126 (Fisher's exact test), Q value = 0.029

Table S14976.  Gene #1415: 'BEND2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
BEND2 MUTATED 7 1 1
BEND2 WILD-TYPE 44 82 76

Figure S3840.  Get High-res Image Gene #1415: 'BEND2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'BEND2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.117 (Fisher's exact test), Q value = 0.38

Table S14977.  Gene #1415: 'BEND2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
BEND2 MUTATED 14 7 2 0
BEND2 WILD-TYPE 164 176 99 20
'BEND2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.6 (Fisher's exact test), Q value = 0.9

Table S14978.  Gene #1415: 'BEND2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
BEND2 MUTATED 5 6 4
BEND2 WILD-TYPE 82 74 96
'BEND2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.791 (Fisher's exact test), Q value = 1

Table S14979.  Gene #1415: 'BEND2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
BEND2 MUTATED 3 9 7
BEND2 WILD-TYPE 86 151 131
'BEND2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.613 (Fisher's exact test), Q value = 0.91

Table S14980.  Gene #1415: 'BEND2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
BEND2 MUTATED 7 8 4
BEND2 WILD-TYPE 175 125 68
'BEND2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.99 (Fisher's exact test), Q value = 1

Table S14981.  Gene #1415: 'BEND2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
BEND2 MUTATED 6 4 4 9
BEND2 WILD-TYPE 106 92 88 177
'BEND2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.24 (Fisher's exact test), Q value = 0.56

Table S14982.  Gene #1415: 'BEND2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
BEND2 MUTATED 3 5 2 1 3 2 7
BEND2 WILD-TYPE 57 45 47 39 60 123 92
'BEND2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.922 (Fisher's exact test), Q value = 1

Table S14983.  Gene #1415: 'BEND2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
BEND2 MUTATED 7 4 2 10
BEND2 WILD-TYPE 123 74 66 186
'BEND2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.546 (Fisher's exact test), Q value = 0.86

Table S14984.  Gene #1415: 'BEND2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
BEND2 MUTATED 1 4 1 6 6 1 2 1 1
BEND2 WILD-TYPE 39 58 27 74 63 47 41 27 73
'BEND2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.783 (Fisher's exact test), Q value = 1

Table S14985.  Gene #1415: 'BEND2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
BEND2 MUTATED 1 0 1 1
BEND2 WILD-TYPE 32 31 26 18
'BEND2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S14986.  Gene #1415: 'BEND2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
BEND2 MUTATED 2 0 1 0
BEND2 WILD-TYPE 52 10 23 22
'KCTD9 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0427 (Fisher's exact test), Q value = 0.22

Table S14987.  Gene #1416: 'KCTD9 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
KCTD9 MUTATED 5 0 0 0
KCTD9 WILD-TYPE 173 183 101 20

Figure S3841.  Get High-res Image Gene #1416: 'KCTD9 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'KCTD9 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.327 (Fisher's exact test), Q value = 0.66

Table S14988.  Gene #1416: 'KCTD9 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
KCTD9 MUTATED 3 0 2
KCTD9 WILD-TYPE 84 80 98
'KCTD9 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0108 (Fisher's exact test), Q value = 0.1

Table S14989.  Gene #1416: 'KCTD9 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
KCTD9 MUTATED 0 0 5
KCTD9 WILD-TYPE 89 160 133

Figure S3842.  Get High-res Image Gene #1416: 'KCTD9 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'KCTD9 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0985 (Fisher's exact test), Q value = 0.34

Table S14990.  Gene #1416: 'KCTD9 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
KCTD9 MUTATED 5 0 0
KCTD9 WILD-TYPE 177 133 72
'KCTD9 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00025 (Fisher's exact test), Q value = 0.0096

Table S14991.  Gene #1416: 'KCTD9 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
KCTD9 MUTATED 0 0 5 0
KCTD9 WILD-TYPE 112 96 87 186

Figure S3843.  Get High-res Image Gene #1416: 'KCTD9 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'KCTD9 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00038 (Fisher's exact test), Q value = 0.013

Table S14992.  Gene #1416: 'KCTD9 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
KCTD9 MUTATED 0 1 4 0 0 0 0
KCTD9 WILD-TYPE 60 49 45 40 63 125 99

Figure S3844.  Get High-res Image Gene #1416: 'KCTD9 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'KCTD9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0585 (Fisher's exact test), Q value = 0.26

Table S14993.  Gene #1416: 'KCTD9 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
KCTD9 MUTATED 3 2 0 0
KCTD9 WILD-TYPE 127 76 68 196
'KCTD9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0129 (Fisher's exact test), Q value = 0.11

Table S14994.  Gene #1416: 'KCTD9 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
KCTD9 MUTATED 0 4 0 0 0 0 1 0 0
KCTD9 WILD-TYPE 40 58 28 80 69 48 42 28 74

Figure S3845.  Get High-res Image Gene #1416: 'KCTD9 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'KCTD9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0962 (Fisher's exact test), Q value = 0.34

Table S14995.  Gene #1416: 'KCTD9 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
KCTD9 MUTATED 2 0 0 2
KCTD9 WILD-TYPE 31 31 27 17
'KCTD9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.43 (Fisher's exact test), Q value = 0.76

Table S14996.  Gene #1416: 'KCTD9 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
KCTD9 MUTATED 4 0 0 0
KCTD9 WILD-TYPE 50 10 24 22
'SBDS MUTATION STATUS' versus 'CN_CNMF'

P value = 0.227 (Fisher's exact test), Q value = 0.54

Table S14997.  Gene #1417: 'SBDS MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
SBDS MUTATED 0 1 2 0
SBDS WILD-TYPE 178 182 99 20
'SBDS MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0266 (Fisher's exact test), Q value = 0.17

Table S14998.  Gene #1417: 'SBDS MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
SBDS MUTATED 0 3 0
SBDS WILD-TYPE 87 77 100

Figure S3846.  Get High-res Image Gene #1417: 'SBDS MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'SBDS MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.15 (Fisher's exact test), Q value = 0.43

Table S14999.  Gene #1417: 'SBDS MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
SBDS MUTATED 2 0 1 0
SBDS WILD-TYPE 110 96 91 186
'SBDS MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0779 (Fisher's exact test), Q value = 0.3

Table S15000.  Gene #1417: 'SBDS MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
SBDS MUTATED 0 1 0 0 2 0 0
SBDS WILD-TYPE 60 49 49 40 61 125 99
'SBDS MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0888 (Fisher's exact test), Q value = 0.32

Table S15001.  Gene #1417: 'SBDS MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
SBDS MUTATED 1 2 0 0
SBDS WILD-TYPE 129 76 68 196
'SBDS MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0733 (Fisher's exact test), Q value = 0.29

Table S15002.  Gene #1417: 'SBDS MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
SBDS MUTATED 0 2 1 0 0 0 0 0 0
SBDS WILD-TYPE 40 60 27 80 69 48 43 28 74
'KIFC2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.442 (Fisher's exact test), Q value = 0.77

Table S15003.  Gene #1418: 'KIFC2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
KIFC2 MUTATED 4 2 0 0
KIFC2 WILD-TYPE 174 181 101 20
'KIFC2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.879 (Fisher's exact test), Q value = 1

Table S15004.  Gene #1418: 'KIFC2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
KIFC2 MUTATED 2 1 3
KIFC2 WILD-TYPE 85 79 97
'KIFC2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S15005.  Gene #1418: 'KIFC2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
KIFC2 MUTATED 1 2 2
KIFC2 WILD-TYPE 88 158 136
'KIFC2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.853 (Fisher's exact test), Q value = 1

Table S15006.  Gene #1418: 'KIFC2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
KIFC2 MUTATED 3 1 1
KIFC2 WILD-TYPE 179 132 71
'KIFC2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0616 (Fisher's exact test), Q value = 0.27

Table S15007.  Gene #1418: 'KIFC2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
KIFC2 MUTATED 2 3 1 0
KIFC2 WILD-TYPE 110 93 91 186
'KIFC2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0101 (Fisher's exact test), Q value = 0.096

Table S15008.  Gene #1418: 'KIFC2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
KIFC2 MUTATED 1 1 3 1 0 0 0
KIFC2 WILD-TYPE 59 49 46 39 63 125 99

Figure S3847.  Get High-res Image Gene #1418: 'KIFC2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'KIFC2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00205 (Fisher's exact test), Q value = 0.038

Table S15009.  Gene #1418: 'KIFC2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
KIFC2 MUTATED 6 0 0 0
KIFC2 WILD-TYPE 124 78 68 196

Figure S3848.  Get High-res Image Gene #1418: 'KIFC2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'KIFC2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00535 (Fisher's exact test), Q value = 0.066

Table S15010.  Gene #1418: 'KIFC2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
KIFC2 MUTATED 4 1 0 0 1 0 0 0 0
KIFC2 WILD-TYPE 36 61 28 80 68 48 43 28 74

Figure S3849.  Get High-res Image Gene #1418: 'KIFC2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'PSMD11 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.164 (Fisher's exact test), Q value = 0.46

Table S15011.  Gene #1419: 'PSMD11 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
PSMD11 MUTATED 6 2 0 0
PSMD11 WILD-TYPE 172 181 101 20
'PSMD11 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S15012.  Gene #1419: 'PSMD11 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
PSMD11 MUTATED 2 1 2
PSMD11 WILD-TYPE 85 79 98
'PSMD11 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.278 (Fisher's exact test), Q value = 0.6

Table S15013.  Gene #1419: 'PSMD11 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
PSMD11 MUTATED 0 5 3
PSMD11 WILD-TYPE 89 155 135
'PSMD11 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S15014.  Gene #1419: 'PSMD11 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
PSMD11 MUTATED 4 3 1
PSMD11 WILD-TYPE 178 130 71
'PSMD11 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.927 (Fisher's exact test), Q value = 1

Table S15015.  Gene #1419: 'PSMD11 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
PSMD11 MUTATED 2 1 2 3
PSMD11 WILD-TYPE 110 95 90 183
'PSMD11 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.118 (Fisher's exact test), Q value = 0.38

Table S15016.  Gene #1419: 'PSMD11 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
PSMD11 MUTATED 2 2 1 0 0 0 3
PSMD11 WILD-TYPE 58 48 48 40 63 125 96
'PSMD11 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.353 (Fisher's exact test), Q value = 0.68

Table S15017.  Gene #1419: 'PSMD11 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
PSMD11 MUTATED 4 0 1 2
PSMD11 WILD-TYPE 126 78 67 194
'PSMD11 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.223 (Fisher's exact test), Q value = 0.54

Table S15018.  Gene #1419: 'PSMD11 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
PSMD11 MUTATED 0 2 1 0 1 1 2 0 0
PSMD11 WILD-TYPE 40 60 27 80 68 47 41 28 74
'PPYR1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.788 (Fisher's exact test), Q value = 1

Table S15019.  Gene #1420: 'PPYR1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
PPYR1 MUTATED 1 0 1 1
PPYR1 WILD-TYPE 45 58 63 42
'PPYR1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.62 (Fisher's exact test), Q value = 0.92

Table S15020.  Gene #1420: 'PPYR1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
PPYR1 MUTATED 0 1 2
PPYR1 WILD-TYPE 51 82 75
'PPYR1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.283 (Fisher's exact test), Q value = 0.61

Table S15021.  Gene #1420: 'PPYR1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
PPYR1 MUTATED 5 2 0 0
PPYR1 WILD-TYPE 173 181 101 20
'PPYR1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.834 (Fisher's exact test), Q value = 1

Table S15022.  Gene #1420: 'PPYR1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
PPYR1 MUTATED 2 1 1
PPYR1 WILD-TYPE 85 79 99
'PPYR1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.24 (Fisher's exact test), Q value = 0.56

Table S15023.  Gene #1420: 'PPYR1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
PPYR1 MUTATED 0 2 4
PPYR1 WILD-TYPE 89 158 134
'PPYR1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.576 (Fisher's exact test), Q value = 0.88

Table S15024.  Gene #1420: 'PPYR1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
PPYR1 MUTATED 3 3 0
PPYR1 WILD-TYPE 179 130 72
'PPYR1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.874 (Fisher's exact test), Q value = 1

Table S15025.  Gene #1420: 'PPYR1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
PPYR1 MUTATED 1 1 2 3
PPYR1 WILD-TYPE 111 95 90 183
'PPYR1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.108 (Fisher's exact test), Q value = 0.36

Table S15026.  Gene #1420: 'PPYR1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
PPYR1 MUTATED 1 1 3 0 0 2 0
PPYR1 WILD-TYPE 59 49 46 40 63 123 99
'PPYR1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S15027.  Gene #1420: 'PPYR1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
PPYR1 MUTATED 2 1 1 3
PPYR1 WILD-TYPE 128 77 67 193
'PPYR1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.514 (Fisher's exact test), Q value = 0.84

Table S15028.  Gene #1420: 'PPYR1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
PPYR1 MUTATED 0 2 0 2 1 0 2 0 0
PPYR1 WILD-TYPE 40 60 28 78 68 48 41 28 74
'MCM4 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0151 (Fisher's exact test), Q value = 0.12

Table S15029.  Gene #1421: 'MCM4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
MCM4 MUTATED 1 0 0 3
MCM4 WILD-TYPE 45 58 64 40

Figure S3850.  Get High-res Image Gene #1421: 'MCM4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'MCM4 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0616 (Fisher's exact test), Q value = 0.27

Table S15030.  Gene #1421: 'MCM4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
MCM4 MUTATED 3 1 0
MCM4 WILD-TYPE 48 82 77
'MCM4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00195 (Fisher's exact test), Q value = 0.037

Table S15031.  Gene #1421: 'MCM4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
MCM4 MUTATED 11 0 3 0
MCM4 WILD-TYPE 167 183 98 20

Figure S3851.  Get High-res Image Gene #1421: 'MCM4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'MCM4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.178 (Fisher's exact test), Q value = 0.48

Table S15032.  Gene #1421: 'MCM4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
MCM4 MUTATED 6 1 3
MCM4 WILD-TYPE 81 79 97
'MCM4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.35 (Fisher's exact test), Q value = 0.68

Table S15033.  Gene #1421: 'MCM4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
MCM4 MUTATED 3 2 5
MCM4 WILD-TYPE 86 158 133
'MCM4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.441 (Fisher's exact test), Q value = 0.77

Table S15034.  Gene #1421: 'MCM4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
MCM4 MUTATED 7 2 1
MCM4 WILD-TYPE 175 131 71
'MCM4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.204 (Fisher's exact test), Q value = 0.51

Table S15035.  Gene #1421: 'MCM4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
MCM4 MUTATED 1 4 5 4
MCM4 WILD-TYPE 111 92 87 182
'MCM4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.022 (Fisher's exact test), Q value = 0.15

Table S15036.  Gene #1421: 'MCM4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
MCM4 MUTATED 1 0 3 2 4 0 4
MCM4 WILD-TYPE 59 50 46 38 59 125 95

Figure S3852.  Get High-res Image Gene #1421: 'MCM4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'MCM4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.496 (Fisher's exact test), Q value = 0.82

Table S15037.  Gene #1421: 'MCM4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
MCM4 MUTATED 6 3 1 4
MCM4 WILD-TYPE 124 75 67 192
'MCM4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.218 (Fisher's exact test), Q value = 0.53

Table S15038.  Gene #1421: 'MCM4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
MCM4 MUTATED 2 3 1 1 5 1 1 0 0
MCM4 WILD-TYPE 38 59 27 79 64 47 42 28 74
'MCM4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S15039.  Gene #1421: 'MCM4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
MCM4 MUTATED 1 1 1 1
MCM4 WILD-TYPE 32 30 26 18
'MCM4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.672 (Fisher's exact test), Q value = 0.95

Table S15040.  Gene #1421: 'MCM4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
MCM4 MUTATED 2 0 2 0
MCM4 WILD-TYPE 52 10 22 22
'ARHGEF3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0644 (Fisher's exact test), Q value = 0.28

Table S15041.  Gene #1422: 'ARHGEF3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ARHGEF3 MUTATED 1 0 0 2
ARHGEF3 WILD-TYPE 45 58 64 41
'ARHGEF3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.254 (Fisher's exact test), Q value = 0.58

Table S15042.  Gene #1422: 'ARHGEF3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ARHGEF3 MUTATED 2 1 0
ARHGEF3 WILD-TYPE 49 82 77
'ARHGEF3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00557 (Fisher's exact test), Q value = 0.068

Table S15043.  Gene #1422: 'ARHGEF3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ARHGEF3 MUTATED 9 1 0 1
ARHGEF3 WILD-TYPE 169 182 101 19

Figure S3853.  Get High-res Image Gene #1422: 'ARHGEF3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ARHGEF3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.497 (Fisher's exact test), Q value = 0.82

Table S15044.  Gene #1422: 'ARHGEF3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ARHGEF3 MUTATED 4 1 3
ARHGEF3 WILD-TYPE 83 79 97
'ARHGEF3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0374 (Fisher's exact test), Q value = 0.2

Table S15045.  Gene #1422: 'ARHGEF3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ARHGEF3 MUTATED 1 1 7
ARHGEF3 WILD-TYPE 88 159 131

Figure S3854.  Get High-res Image Gene #1422: 'ARHGEF3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'ARHGEF3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.167 (Fisher's exact test), Q value = 0.46

Table S15046.  Gene #1422: 'ARHGEF3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ARHGEF3 MUTATED 7 2 0
ARHGEF3 WILD-TYPE 175 131 72
'ARHGEF3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.329 (Fisher's exact test), Q value = 0.66

Table S15047.  Gene #1422: 'ARHGEF3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ARHGEF3 MUTATED 1 3 4 3
ARHGEF3 WILD-TYPE 111 93 88 183
'ARHGEF3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00382 (Fisher's exact test), Q value = 0.056

Table S15048.  Gene #1422: 'ARHGEF3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ARHGEF3 MUTATED 0 1 5 0 2 0 3
ARHGEF3 WILD-TYPE 60 49 44 40 61 125 96

Figure S3855.  Get High-res Image Gene #1422: 'ARHGEF3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ARHGEF3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.473 (Fisher's exact test), Q value = 0.8

Table S15049.  Gene #1422: 'ARHGEF3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ARHGEF3 MUTATED 3 3 0 4
ARHGEF3 WILD-TYPE 127 75 68 192
'ARHGEF3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.143 (Fisher's exact test), Q value = 0.42

Table S15050.  Gene #1422: 'ARHGEF3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ARHGEF3 MUTATED 1 3 1 0 4 0 0 0 1
ARHGEF3 WILD-TYPE 39 59 27 80 65 48 43 28 73
'ARHGEF3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.139 (Fisher's exact test), Q value = 0.41

Table S15051.  Gene #1422: 'ARHGEF3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
ARHGEF3 MUTATED 1 0 0 2
ARHGEF3 WILD-TYPE 32 31 27 17
'ARHGEF3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S15052.  Gene #1422: 'ARHGEF3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
ARHGEF3 MUTATED 2 0 1 0
ARHGEF3 WILD-TYPE 52 10 23 22
'KLF3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.327 (Fisher's exact test), Q value = 0.66

Table S15053.  Gene #1423: 'KLF3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
KLF3 MUTATED 5 1 1 0
KLF3 WILD-TYPE 173 182 100 20
'KLF3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.196 (Fisher's exact test), Q value = 0.5

Table S15054.  Gene #1423: 'KLF3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
KLF3 MUTATED 1 0 4
KLF3 WILD-TYPE 86 80 96
'KLF3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.298 (Fisher's exact test), Q value = 0.63

Table S15055.  Gene #1423: 'KLF3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
KLF3 MUTATED 0 4 1
KLF3 WILD-TYPE 89 156 137
'KLF3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0094 (Fisher's exact test), Q value = 0.091

Table S15056.  Gene #1423: 'KLF3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
KLF3 MUTATED 0 5 0
KLF3 WILD-TYPE 182 128 72

Figure S3856.  Get High-res Image Gene #1423: 'KLF3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'KLF3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.189 (Fisher's exact test), Q value = 0.49

Table S15057.  Gene #1423: 'KLF3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
KLF3 MUTATED 0 3 2 2
KLF3 WILD-TYPE 112 93 90 184
'KLF3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.022 (Fisher's exact test), Q value = 0.15

Table S15058.  Gene #1423: 'KLF3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
KLF3 MUTATED 0 1 4 0 0 1 1
KLF3 WILD-TYPE 60 49 45 40 63 124 98

Figure S3857.  Get High-res Image Gene #1423: 'KLF3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'KLF3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.904 (Fisher's exact test), Q value = 1

Table S15059.  Gene #1423: 'KLF3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
KLF3 MUTATED 2 1 0 4
KLF3 WILD-TYPE 128 77 68 192
'KLF3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.385 (Fisher's exact test), Q value = 0.71

Table S15060.  Gene #1423: 'KLF3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
KLF3 MUTATED 1 1 0 0 3 0 0 1 1
KLF3 WILD-TYPE 39 61 28 80 66 48 43 27 73
'SENP8 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.121 (Fisher's exact test), Q value = 0.39

Table S15061.  Gene #1424: 'SENP8 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
SENP8 MUTATED 4 0 0 0
SENP8 WILD-TYPE 174 183 101 20
'SENP8 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.556 (Fisher's exact test), Q value = 0.87

Table S15062.  Gene #1424: 'SENP8 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
SENP8 MUTATED 2 0 2
SENP8 WILD-TYPE 85 80 98
'SENP8 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.359 (Fisher's exact test), Q value = 0.69

Table S15063.  Gene #1424: 'SENP8 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
SENP8 MUTATED 0 1 3
SENP8 WILD-TYPE 89 159 135
'SENP8 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.83 (Fisher's exact test), Q value = 1

Table S15064.  Gene #1424: 'SENP8 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
SENP8 MUTATED 2 2 0
SENP8 WILD-TYPE 180 131 72
'SENP8 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0102 (Fisher's exact test), Q value = 0.097

Table S15065.  Gene #1424: 'SENP8 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
SENP8 MUTATED 0 1 3 0
SENP8 WILD-TYPE 112 95 89 186

Figure S3858.  Get High-res Image Gene #1424: 'SENP8 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'SENP8 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00324 (Fisher's exact test), Q value = 0.051

Table S15066.  Gene #1424: 'SENP8 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
SENP8 MUTATED 0 1 3 0 0 0 0
SENP8 WILD-TYPE 60 49 46 40 63 125 99

Figure S3859.  Get High-res Image Gene #1424: 'SENP8 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'SENP8 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.214 (Fisher's exact test), Q value = 0.52

Table S15067.  Gene #1424: 'SENP8 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
SENP8 MUTATED 0 2 0 2
SENP8 WILD-TYPE 130 76 68 194
'SENP8 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.784 (Fisher's exact test), Q value = 1

Table S15068.  Gene #1424: 'SENP8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
SENP8 MUTATED 0 2 0 1 1 0 0 0 0
SENP8 WILD-TYPE 40 60 28 79 68 48 43 28 74
'GCM2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.309 (Fisher's exact test), Q value = 0.64

Table S15069.  Gene #1425: 'GCM2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
GCM2 MUTATED 1 1 0 2
GCM2 WILD-TYPE 45 57 64 41
'GCM2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.68 (Fisher's exact test), Q value = 0.96

Table S15070.  Gene #1425: 'GCM2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
GCM2 MUTATED 0 2 2
GCM2 WILD-TYPE 51 81 75
'GCM2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.329 (Fisher's exact test), Q value = 0.66

Table S15071.  Gene #1425: 'GCM2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
GCM2 MUTATED 8 4 1 0
GCM2 WILD-TYPE 170 179 100 20
'GCM2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.125 (Fisher's exact test), Q value = 0.39

Table S15072.  Gene #1425: 'GCM2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
GCM2 MUTATED 6 1 2
GCM2 WILD-TYPE 81 79 98
'GCM2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.228 (Fisher's exact test), Q value = 0.55

Table S15073.  Gene #1425: 'GCM2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
GCM2 MUTATED 1 8 3
GCM2 WILD-TYPE 88 152 135
'GCM2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.503 (Fisher's exact test), Q value = 0.83

Table S15074.  Gene #1425: 'GCM2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
GCM2 MUTATED 4 6 2
GCM2 WILD-TYPE 178 127 70
'GCM2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.799 (Fisher's exact test), Q value = 1

Table S15075.  Gene #1425: 'GCM2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
GCM2 MUTATED 3 4 3 4
GCM2 WILD-TYPE 109 92 89 182
'GCM2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.148 (Fisher's exact test), Q value = 0.43

Table S15076.  Gene #1425: 'GCM2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
GCM2 MUTATED 3 1 4 2 1 2 1
GCM2 WILD-TYPE 57 49 45 38 62 123 98
'GCM2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.871 (Fisher's exact test), Q value = 1

Table S15077.  Gene #1425: 'GCM2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
GCM2 MUTATED 5 2 1 6
GCM2 WILD-TYPE 125 76 67 190
'GCM2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.887 (Fisher's exact test), Q value = 1

Table S15078.  Gene #1425: 'GCM2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
GCM2 MUTATED 2 1 1 3 3 1 2 0 1
GCM2 WILD-TYPE 38 61 27 77 66 47 41 28 73
'GCM2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.349 (Fisher's exact test), Q value = 0.68

Table S15079.  Gene #1425: 'GCM2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
GCM2 MUTATED 2 0 2 2
GCM2 WILD-TYPE 31 31 25 17
'GCM2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0828 (Fisher's exact test), Q value = 0.31

Table S15080.  Gene #1425: 'GCM2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
GCM2 MUTATED 2 0 4 0
GCM2 WILD-TYPE 52 10 20 22
'KRT9 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.222 (Fisher's exact test), Q value = 0.54

Table S15081.  Gene #1426: 'KRT9 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
KRT9 MUTATED 2 1 0 2
KRT9 WILD-TYPE 44 57 64 41
'KRT9 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.739 (Fisher's exact test), Q value = 1

Table S15082.  Gene #1426: 'KRT9 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
KRT9 MUTATED 2 2 1
KRT9 WILD-TYPE 49 81 76
'KRT9 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00745 (Fisher's exact test), Q value = 0.08

Table S15083.  Gene #1426: 'KRT9 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
KRT9 MUTATED 11 2 0 0
KRT9 WILD-TYPE 167 181 101 20

Figure S3860.  Get High-res Image Gene #1426: 'KRT9 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'KRT9 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0613 (Fisher's exact test), Q value = 0.27

Table S15084.  Gene #1426: 'KRT9 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
KRT9 MUTATED 6 1 1
KRT9 WILD-TYPE 81 79 99
'KRT9 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.268 (Fisher's exact test), Q value = 0.59

Table S15085.  Gene #1426: 'KRT9 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
KRT9 MUTATED 2 2 6
KRT9 WILD-TYPE 87 158 132
'KRT9 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.186 (Fisher's exact test), Q value = 0.49

Table S15086.  Gene #1426: 'KRT9 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
KRT9 MUTATED 6 1 3
KRT9 WILD-TYPE 176 132 69
'KRT9 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0806 (Fisher's exact test), Q value = 0.31

Table S15087.  Gene #1426: 'KRT9 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
KRT9 MUTATED 1 1 6 5
KRT9 WILD-TYPE 111 95 86 181
'KRT9 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.164 (Fisher's exact test), Q value = 0.46

Table S15088.  Gene #1426: 'KRT9 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
KRT9 MUTATED 0 1 4 0 2 2 4
KRT9 WILD-TYPE 60 49 45 40 61 123 95
'KRT9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.2 (Fisher's exact test), Q value = 0.5

Table S15089.  Gene #1426: 'KRT9 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
KRT9 MUTATED 1 4 1 7
KRT9 WILD-TYPE 129 74 67 189
'KRT9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0101 (Fisher's exact test), Q value = 0.096

Table S15090.  Gene #1426: 'KRT9 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
KRT9 MUTATED 1 6 2 0 3 0 0 0 1
KRT9 WILD-TYPE 39 56 26 80 66 48 43 28 73

Figure S3861.  Get High-res Image Gene #1426: 'KRT9 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'CHD7 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00057 (Fisher's exact test), Q value = 0.017

Table S15091.  Gene #1427: 'CHD7 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
CHD7 MUTATED 7 1 0 5
CHD7 WILD-TYPE 39 57 64 38

Figure S3862.  Get High-res Image Gene #1427: 'CHD7 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'CHD7 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.162 (Fisher's exact test), Q value = 0.45

Table S15092.  Gene #1427: 'CHD7 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
CHD7 MUTATED 6 3 4
CHD7 WILD-TYPE 45 80 73
'CHD7 MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S15093.  Gene #1427: 'CHD7 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
CHD7 MUTATED 29 5 3 0
CHD7 WILD-TYPE 149 178 98 20

Figure S3863.  Get High-res Image Gene #1427: 'CHD7 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'CHD7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.362 (Fisher's exact test), Q value = 0.69

Table S15094.  Gene #1427: 'CHD7 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
CHD7 MUTATED 10 5 12
CHD7 WILD-TYPE 77 75 88
'CHD7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0786 (Fisher's exact test), Q value = 0.3

Table S15095.  Gene #1427: 'CHD7 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
CHD7 MUTATED 3 15 16
CHD7 WILD-TYPE 86 145 122
'CHD7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.327 (Fisher's exact test), Q value = 0.66

Table S15096.  Gene #1427: 'CHD7 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
CHD7 MUTATED 12 15 7
CHD7 WILD-TYPE 170 118 65
'CHD7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.23 (Fisher's exact test), Q value = 0.55

Table S15097.  Gene #1427: 'CHD7 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
CHD7 MUTATED 6 11 10 12
CHD7 WILD-TYPE 106 85 82 174
'CHD7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 2e-05 (Fisher's exact test), Q value = 0.0017

Table S15098.  Gene #1427: 'CHD7 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
CHD7 MUTATED 6 1 14 2 3 2 11
CHD7 WILD-TYPE 54 49 35 38 60 123 88

Figure S3864.  Get High-res Image Gene #1427: 'CHD7 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CHD7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.573 (Fisher's exact test), Q value = 0.88

Table S15099.  Gene #1427: 'CHD7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
CHD7 MUTATED 13 5 3 16
CHD7 WILD-TYPE 117 73 65 180
'CHD7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0148 (Fisher's exact test), Q value = 0.12

Table S15100.  Gene #1427: 'CHD7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
CHD7 MUTATED 2 6 3 3 14 3 2 2 2
CHD7 WILD-TYPE 38 56 25 77 55 45 41 26 72

Figure S3865.  Get High-res Image Gene #1427: 'CHD7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'CHD7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0316 (Fisher's exact test), Q value = 0.18

Table S15101.  Gene #1427: 'CHD7 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
CHD7 MUTATED 3 0 1 4
CHD7 WILD-TYPE 30 31 26 15

Figure S3866.  Get High-res Image Gene #1427: 'CHD7 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'CHD7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.297 (Fisher's exact test), Q value = 0.63

Table S15102.  Gene #1427: 'CHD7 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
CHD7 MUTATED 3 0 4 1
CHD7 WILD-TYPE 51 10 20 21
'CHD1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00771 (Fisher's exact test), Q value = 0.082

Table S15103.  Gene #1428: 'CHD1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
CHD1 MUTATED 5 0 1 4
CHD1 WILD-TYPE 41 58 63 39

Figure S3867.  Get High-res Image Gene #1428: 'CHD1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'CHD1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 4e-04 (Fisher's exact test), Q value = 0.013

Table S15104.  Gene #1428: 'CHD1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
CHD1 MUTATED 8 1 1
CHD1 WILD-TYPE 43 82 76

Figure S3868.  Get High-res Image Gene #1428: 'CHD1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'CHD1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00271 (Fisher's exact test), Q value = 0.046

Table S15105.  Gene #1428: 'CHD1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
CHD1 MUTATED 18 4 2 0
CHD1 WILD-TYPE 160 179 99 20

Figure S3869.  Get High-res Image Gene #1428: 'CHD1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'CHD1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0101 (Fisher's exact test), Q value = 0.096

Table S15106.  Gene #1428: 'CHD1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
CHD1 MUTATED 8 0 7
CHD1 WILD-TYPE 79 80 93

Figure S3870.  Get High-res Image Gene #1428: 'CHD1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'CHD1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.03 (Fisher's exact test), Q value = 0.18

Table S15107.  Gene #1428: 'CHD1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
CHD1 MUTATED 5 4 13
CHD1 WILD-TYPE 84 156 125

Figure S3871.  Get High-res Image Gene #1428: 'CHD1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'CHD1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.705 (Fisher's exact test), Q value = 0.98

Table S15108.  Gene #1428: 'CHD1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
CHD1 MUTATED 12 6 4
CHD1 WILD-TYPE 170 127 68
'CHD1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.62 (Fisher's exact test), Q value = 0.92

Table S15109.  Gene #1428: 'CHD1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
CHD1 MUTATED 4 5 7 9
CHD1 WILD-TYPE 108 91 85 177
'CHD1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0696 (Fisher's exact test), Q value = 0.28

Table S15110.  Gene #1428: 'CHD1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
CHD1 MUTATED 3 4 5 2 3 1 7
CHD1 WILD-TYPE 57 46 44 38 60 124 92
'CHD1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.461 (Fisher's exact test), Q value = 0.79

Table S15111.  Gene #1428: 'CHD1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
CHD1 MUTATED 8 5 1 10
CHD1 WILD-TYPE 122 73 67 186
'CHD1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00172 (Fisher's exact test), Q value = 0.034

Table S15112.  Gene #1428: 'CHD1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
CHD1 MUTATED 1 9 2 0 7 2 0 1 2
CHD1 WILD-TYPE 39 53 26 80 62 46 43 27 72

Figure S3872.  Get High-res Image Gene #1428: 'CHD1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'CHD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0162 (Fisher's exact test), Q value = 0.13

Table S15113.  Gene #1428: 'CHD1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
CHD1 MUTATED 1 1 0 4
CHD1 WILD-TYPE 32 30 27 15

Figure S3873.  Get High-res Image Gene #1428: 'CHD1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'CHD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.459 (Fisher's exact test), Q value = 0.79

Table S15114.  Gene #1428: 'CHD1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
CHD1 MUTATED 5 0 0 1
CHD1 WILD-TYPE 49 10 24 21
'LRIG2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0121 (Fisher's exact test), Q value = 0.11

Table S15115.  Gene #1429: 'LRIG2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
LRIG2 MUTATED 8 0 1 0
LRIG2 WILD-TYPE 170 183 100 20

Figure S3874.  Get High-res Image Gene #1429: 'LRIG2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'LRIG2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.026 (Fisher's exact test), Q value = 0.16

Table S15116.  Gene #1429: 'LRIG2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
LRIG2 MUTATED 1 0 6
LRIG2 WILD-TYPE 86 80 94

Figure S3875.  Get High-res Image Gene #1429: 'LRIG2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'LRIG2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.903 (Fisher's exact test), Q value = 1

Table S15117.  Gene #1429: 'LRIG2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
LRIG2 MUTATED 1 4 3
LRIG2 WILD-TYPE 88 156 135
'LRIG2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S15118.  Gene #1429: 'LRIG2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
LRIG2 MUTATED 4 3 1
LRIG2 WILD-TYPE 178 130 71
'LRIG2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.14 (Fisher's exact test), Q value = 0.42

Table S15119.  Gene #1429: 'LRIG2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
LRIG2 MUTATED 0 4 2 3
LRIG2 WILD-TYPE 112 92 90 183
'LRIG2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0235 (Fisher's exact test), Q value = 0.16

Table S15120.  Gene #1429: 'LRIG2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
LRIG2 MUTATED 0 2 3 1 0 0 3
LRIG2 WILD-TYPE 60 48 46 39 63 125 96

Figure S3876.  Get High-res Image Gene #1429: 'LRIG2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'LRIG2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0701 (Fisher's exact test), Q value = 0.29

Table S15121.  Gene #1429: 'LRIG2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
LRIG2 MUTATED 6 0 0 3
LRIG2 WILD-TYPE 124 78 68 193
'LRIG2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0318 (Fisher's exact test), Q value = 0.18

Table S15122.  Gene #1429: 'LRIG2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
LRIG2 MUTATED 4 0 0 1 3 0 0 0 1
LRIG2 WILD-TYPE 36 62 28 79 66 48 43 28 73

Figure S3877.  Get High-res Image Gene #1429: 'LRIG2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'SAMD9 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0479 (Fisher's exact test), Q value = 0.23

Table S15123.  Gene #1430: 'SAMD9 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
SAMD9 MUTATED 3 2 0 4
SAMD9 WILD-TYPE 43 56 64 39

Figure S3878.  Get High-res Image Gene #1430: 'SAMD9 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'SAMD9 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.689 (Fisher's exact test), Q value = 0.97

Table S15124.  Gene #1430: 'SAMD9 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
SAMD9 MUTATED 3 4 2
SAMD9 WILD-TYPE 48 79 75
'SAMD9 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00411 (Fisher's exact test), Q value = 0.058

Table S15125.  Gene #1430: 'SAMD9 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
SAMD9 MUTATED 19 6 2 2
SAMD9 WILD-TYPE 159 177 99 18

Figure S3879.  Get High-res Image Gene #1430: 'SAMD9 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'SAMD9 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.11 (Fisher's exact test), Q value = 0.37

Table S15126.  Gene #1430: 'SAMD9 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
SAMD9 MUTATED 8 2 10
SAMD9 WILD-TYPE 79 78 90
'SAMD9 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.263 (Fisher's exact test), Q value = 0.59

Table S15127.  Gene #1430: 'SAMD9 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
SAMD9 MUTATED 3 14 10
SAMD9 WILD-TYPE 86 146 128
'SAMD9 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.933 (Fisher's exact test), Q value = 1

Table S15128.  Gene #1430: 'SAMD9 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
SAMD9 MUTATED 13 10 4
SAMD9 WILD-TYPE 169 123 68
'SAMD9 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0012 (Fisher's exact test), Q value = 0.028

Table S15129.  Gene #1430: 'SAMD9 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
SAMD9 MUTATED 0 10 8 11
SAMD9 WILD-TYPE 112 86 84 175

Figure S3880.  Get High-res Image Gene #1430: 'SAMD9 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'SAMD9 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00816 (Fisher's exact test), Q value = 0.084

Table S15130.  Gene #1430: 'SAMD9 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
SAMD9 MUTATED 3 3 9 0 4 3 7
SAMD9 WILD-TYPE 57 47 40 40 59 122 92

Figure S3881.  Get High-res Image Gene #1430: 'SAMD9 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'SAMD9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.341 (Fisher's exact test), Q value = 0.67

Table S15131.  Gene #1430: 'SAMD9 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
SAMD9 MUTATED 9 6 1 12
SAMD9 WILD-TYPE 121 72 67 184
'SAMD9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00101 (Fisher's exact test), Q value = 0.025

Table S15132.  Gene #1430: 'SAMD9 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
SAMD9 MUTATED 4 7 4 1 8 0 0 2 2
SAMD9 WILD-TYPE 36 55 24 79 61 48 43 26 72

Figure S3882.  Get High-res Image Gene #1430: 'SAMD9 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'SAMD9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.121 (Fisher's exact test), Q value = 0.39

Table S15133.  Gene #1430: 'SAMD9 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
SAMD9 MUTATED 2 1 0 3
SAMD9 WILD-TYPE 31 30 27 16
'SAMD9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.568 (Fisher's exact test), Q value = 0.88

Table S15134.  Gene #1430: 'SAMD9 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
SAMD9 MUTATED 5 0 1 0
SAMD9 WILD-TYPE 49 10 23 22
'CROT MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0737 (Fisher's exact test), Q value = 0.29

Table S15135.  Gene #1431: 'CROT MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
CROT MUTATED 2 0 0 2
CROT WILD-TYPE 44 58 64 41
'CROT MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.178 (Fisher's exact test), Q value = 0.48

Table S15136.  Gene #1431: 'CROT MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
CROT MUTATED 2 0 2
CROT WILD-TYPE 49 83 75
'CROT MUTATION STATUS' versus 'CN_CNMF'

P value = 0.625 (Fisher's exact test), Q value = 0.92

Table S15137.  Gene #1431: 'CROT MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
CROT MUTATED 6 3 1 0
CROT WILD-TYPE 172 180 100 20
'CROT MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.712 (Fisher's exact test), Q value = 0.98

Table S15138.  Gene #1431: 'CROT MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
CROT MUTATED 3 1 3
CROT WILD-TYPE 84 79 97
'CROT MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0321 (Fisher's exact test), Q value = 0.18

Table S15139.  Gene #1431: 'CROT MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
CROT MUTATED 0 2 7
CROT WILD-TYPE 89 158 131

Figure S3883.  Get High-res Image Gene #1431: 'CROT MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'CROT MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.404 (Fisher's exact test), Q value = 0.73

Table S15140.  Gene #1431: 'CROT MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
CROT MUTATED 5 4 0
CROT WILD-TYPE 177 129 72
'CROT MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.606 (Fisher's exact test), Q value = 0.91

Table S15141.  Gene #1431: 'CROT MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
CROT MUTATED 1 3 3 4
CROT WILD-TYPE 111 93 89 182
'CROT MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.25 (Fisher's exact test), Q value = 0.58

Table S15142.  Gene #1431: 'CROT MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
CROT MUTATED 2 2 2 2 0 1 2
CROT WILD-TYPE 58 48 47 38 63 124 97
'CROT MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.882 (Fisher's exact test), Q value = 1

Table S15143.  Gene #1431: 'CROT MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
CROT MUTATED 4 1 1 4
CROT WILD-TYPE 126 77 67 192
'CROT MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.728 (Fisher's exact test), Q value = 0.99

Table S15144.  Gene #1431: 'CROT MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
CROT MUTATED 1 2 0 1 3 0 2 0 1
CROT WILD-TYPE 39 60 28 79 66 48 41 28 73
'CROT MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0243 (Fisher's exact test), Q value = 0.16

Table S15145.  Gene #1431: 'CROT MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
CROT MUTATED 1 0 0 3
CROT WILD-TYPE 32 31 27 16

Figure S3884.  Get High-res Image Gene #1431: 'CROT MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'CROT MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.765 (Fisher's exact test), Q value = 1

Table S15146.  Gene #1431: 'CROT MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
CROT MUTATED 3 0 0 1
CROT WILD-TYPE 51 10 24 21
'BUB1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.402 (Fisher's exact test), Q value = 0.73

Table S15147.  Gene #1432: 'BUB1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
BUB1 MUTATED 1 0 2 2
BUB1 WILD-TYPE 45 58 62 41
'BUB1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S15148.  Gene #1432: 'BUB1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
BUB1 MUTATED 1 2 2
BUB1 WILD-TYPE 50 81 75
'BUB1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0895 (Fisher's exact test), Q value = 0.33

Table S15149.  Gene #1432: 'BUB1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
BUB1 MUTATED 11 4 1 0
BUB1 WILD-TYPE 167 179 100 20
'BUB1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.666 (Fisher's exact test), Q value = 0.95

Table S15150.  Gene #1432: 'BUB1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
BUB1 MUTATED 2 4 4
BUB1 WILD-TYPE 85 76 96
'BUB1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.343 (Fisher's exact test), Q value = 0.67

Table S15151.  Gene #1432: 'BUB1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
BUB1 MUTATED 4 3 6
BUB1 WILD-TYPE 85 157 132
'BUB1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.808 (Fisher's exact test), Q value = 1

Table S15152.  Gene #1432: 'BUB1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
BUB1 MUTATED 5 5 3
BUB1 WILD-TYPE 177 128 69
'BUB1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.342 (Fisher's exact test), Q value = 0.67

Table S15153.  Gene #1432: 'BUB1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
BUB1 MUTATED 3 6 3 4
BUB1 WILD-TYPE 109 90 89 182
'BUB1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.253 (Fisher's exact test), Q value = 0.58

Table S15154.  Gene #1432: 'BUB1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
BUB1 MUTATED 1 3 4 2 1 2 3
BUB1 WILD-TYPE 59 47 45 38 62 123 96
'BUB1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.389 (Fisher's exact test), Q value = 0.72

Table S15155.  Gene #1432: 'BUB1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
BUB1 MUTATED 5 2 0 8
BUB1 WILD-TYPE 125 76 68 188
'BUB1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.474 (Fisher's exact test), Q value = 0.8

Table S15156.  Gene #1432: 'BUB1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
BUB1 MUTATED 3 2 2 3 2 0 0 1 2
BUB1 WILD-TYPE 37 60 26 77 67 48 43 27 72
'BUB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.207 (Fisher's exact test), Q value = 0.51

Table S15157.  Gene #1432: 'BUB1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
BUB1 MUTATED 0 2 0 1
BUB1 WILD-TYPE 33 29 27 18
'BUB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.316 (Fisher's exact test), Q value = 0.64

Table S15158.  Gene #1432: 'BUB1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
BUB1 MUTATED 1 1 1 0
BUB1 WILD-TYPE 53 9 23 22
'SULT1E1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0438 (Fisher's exact test), Q value = 0.22

Table S15159.  Gene #1433: 'SULT1E1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
SULT1E1 MUTATED 5 0 0 0
SULT1E1 WILD-TYPE 173 183 101 20

Figure S3885.  Get High-res Image Gene #1433: 'SULT1E1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'SULT1E1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0609 (Fisher's exact test), Q value = 0.27

Table S15160.  Gene #1433: 'SULT1E1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
SULT1E1 MUTATED 3 0 0
SULT1E1 WILD-TYPE 84 80 100
'SULT1E1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.684 (Fisher's exact test), Q value = 0.96

Table S15161.  Gene #1433: 'SULT1E1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
SULT1E1 MUTATED 0 2 2
SULT1E1 WILD-TYPE 89 158 136
'SULT1E1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.827 (Fisher's exact test), Q value = 1

Table S15162.  Gene #1433: 'SULT1E1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
SULT1E1 MUTATED 2 2 0
SULT1E1 WILD-TYPE 180 131 72
'SULT1E1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.263 (Fisher's exact test), Q value = 0.59

Table S15163.  Gene #1433: 'SULT1E1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
SULT1E1 MUTATED 0 0 2 3
SULT1E1 WILD-TYPE 112 96 90 183
'SULT1E1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.455 (Fisher's exact test), Q value = 0.78

Table S15164.  Gene #1433: 'SULT1E1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
SULT1E1 MUTATED 1 0 1 0 1 0 2
SULT1E1 WILD-TYPE 59 50 48 40 62 125 97
'SULT1E1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.931 (Fisher's exact test), Q value = 1

Table S15165.  Gene #1433: 'SULT1E1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
SULT1E1 MUTATED 1 1 0 3
SULT1E1 WILD-TYPE 129 77 68 193
'SULT1E1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.62 (Fisher's exact test), Q value = 0.92

Table S15166.  Gene #1433: 'SULT1E1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
SULT1E1 MUTATED 0 2 0 0 2 0 0 0 1
SULT1E1 WILD-TYPE 40 60 28 80 67 48 43 28 73
'TTBK2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0271 (Fisher's exact test), Q value = 0.17

Table S15167.  Gene #1434: 'TTBK2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
TTBK2 MUTATED 3 0 0 2
TTBK2 WILD-TYPE 43 58 64 41

Figure S3886.  Get High-res Image Gene #1434: 'TTBK2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'TTBK2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.739 (Fisher's exact test), Q value = 1

Table S15168.  Gene #1434: 'TTBK2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
TTBK2 MUTATED 2 2 1
TTBK2 WILD-TYPE 49 81 76
'TTBK2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00065 (Fisher's exact test), Q value = 0.018

Table S15169.  Gene #1434: 'TTBK2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
TTBK2 MUTATED 15 1 2 0
TTBK2 WILD-TYPE 163 182 99 20

Figure S3887.  Get High-res Image Gene #1434: 'TTBK2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'TTBK2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.176 (Fisher's exact test), Q value = 0.47

Table S15170.  Gene #1434: 'TTBK2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
TTBK2 MUTATED 6 1 6
TTBK2 WILD-TYPE 81 79 94
'TTBK2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.477 (Fisher's exact test), Q value = 0.81

Table S15171.  Gene #1434: 'TTBK2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
TTBK2 MUTATED 1 6 6
TTBK2 WILD-TYPE 88 154 132
'TTBK2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.567 (Fisher's exact test), Q value = 0.87

Table S15172.  Gene #1434: 'TTBK2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
TTBK2 MUTATED 6 6 1
TTBK2 WILD-TYPE 176 127 71
'TTBK2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.173 (Fisher's exact test), Q value = 0.47

Table S15173.  Gene #1434: 'TTBK2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
TTBK2 MUTATED 2 7 4 5
TTBK2 WILD-TYPE 110 89 88 181
'TTBK2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0226 (Fisher's exact test), Q value = 0.15

Table S15174.  Gene #1434: 'TTBK2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
TTBK2 MUTATED 2 3 6 2 1 1 3
TTBK2 WILD-TYPE 58 47 43 38 62 124 96

Figure S3888.  Get High-res Image Gene #1434: 'TTBK2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'TTBK2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.494 (Fisher's exact test), Q value = 0.82

Table S15175.  Gene #1434: 'TTBK2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
TTBK2 MUTATED 8 2 2 6
TTBK2 WILD-TYPE 122 76 66 190
'TTBK2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.405 (Fisher's exact test), Q value = 0.73

Table S15176.  Gene #1434: 'TTBK2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
TTBK2 MUTATED 2 3 1 3 5 0 3 0 1
TTBK2 WILD-TYPE 38 59 27 77 64 48 40 28 73
'TTBK2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0716 (Fisher's exact test), Q value = 0.29

Table S15177.  Gene #1434: 'TTBK2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
TTBK2 MUTATED 1 0 1 3
TTBK2 WILD-TYPE 32 31 26 16
'TTBK2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.191 (Fisher's exact test), Q value = 0.49

Table S15178.  Gene #1434: 'TTBK2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
TTBK2 MUTATED 2 0 3 0
TTBK2 WILD-TYPE 52 10 21 22
'SMO MUTATION STATUS' versus 'CN_CNMF'

P value = 0.351 (Fisher's exact test), Q value = 0.68

Table S15179.  Gene #1435: 'SMO MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
SMO MUTATED 7 3 2 1
SMO WILD-TYPE 171 180 99 19
'SMO MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.163 (Fisher's exact test), Q value = 0.46

Table S15180.  Gene #1435: 'SMO MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
SMO MUTATED 5 1 7
SMO WILD-TYPE 82 79 93
'SMO MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.203 (Fisher's exact test), Q value = 0.51

Table S15181.  Gene #1435: 'SMO MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
SMO MUTATED 0 5 5
SMO WILD-TYPE 89 155 133
'SMO MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.917 (Fisher's exact test), Q value = 1

Table S15182.  Gene #1435: 'SMO MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
SMO MUTATED 5 4 1
SMO WILD-TYPE 177 129 71
'SMO MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00102 (Fisher's exact test), Q value = 0.025

Table S15183.  Gene #1435: 'SMO MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
SMO MUTATED 3 7 3 0
SMO WILD-TYPE 109 89 89 186

Figure S3889.  Get High-res Image Gene #1435: 'SMO MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'SMO MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0339 (Fisher's exact test), Q value = 0.19

Table S15184.  Gene #1435: 'SMO MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
SMO MUTATED 2 3 2 0 4 0 2
SMO WILD-TYPE 58 47 47 40 59 125 97

Figure S3890.  Get High-res Image Gene #1435: 'SMO MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'SMO MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.152 (Fisher's exact test), Q value = 0.44

Table S15185.  Gene #1435: 'SMO MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
SMO MUTATED 6 3 2 2
SMO WILD-TYPE 124 75 66 194
'SMO MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.237 (Fisher's exact test), Q value = 0.56

Table S15186.  Gene #1435: 'SMO MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
SMO MUTATED 0 1 1 3 4 1 3 0 0
SMO WILD-TYPE 40 61 27 77 65 47 40 28 74
'SMO MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.28 (Fisher's exact test), Q value = 0.61

Table S15187.  Gene #1435: 'SMO MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
SMO MUTATED 0 2 2 2
SMO WILD-TYPE 33 29 25 17
'SMO MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.121 (Fisher's exact test), Q value = 0.39

Table S15188.  Gene #1435: 'SMO MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
SMO MUTATED 1 0 2 3
SMO WILD-TYPE 53 10 22 19
'FBXO40 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.135 (Fisher's exact test), Q value = 0.41

Table S15189.  Gene #1436: 'FBXO40 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
FBXO40 MUTATED 3 0 1 2
FBXO40 WILD-TYPE 43 58 63 41
'FBXO40 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.339 (Fisher's exact test), Q value = 0.67

Table S15190.  Gene #1436: 'FBXO40 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
FBXO40 MUTATED 3 2 1
FBXO40 WILD-TYPE 48 81 76
'FBXO40 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0405 (Fisher's exact test), Q value = 0.21

Table S15191.  Gene #1436: 'FBXO40 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
FBXO40 MUTATED 14 6 1 0
FBXO40 WILD-TYPE 164 177 100 20

Figure S3891.  Get High-res Image Gene #1436: 'FBXO40 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'FBXO40 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.298 (Fisher's exact test), Q value = 0.63

Table S15192.  Gene #1436: 'FBXO40 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
FBXO40 MUTATED 7 2 6
FBXO40 WILD-TYPE 80 78 94
'FBXO40 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0398 (Fisher's exact test), Q value = 0.21

Table S15193.  Gene #1436: 'FBXO40 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
FBXO40 MUTATED 1 5 11
FBXO40 WILD-TYPE 88 155 127

Figure S3892.  Get High-res Image Gene #1436: 'FBXO40 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'FBXO40 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.16 (Fisher's exact test), Q value = 0.45

Table S15194.  Gene #1436: 'FBXO40 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
FBXO40 MUTATED 12 4 1
FBXO40 WILD-TYPE 170 129 71
'FBXO40 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.552 (Fisher's exact test), Q value = 0.87

Table S15195.  Gene #1436: 'FBXO40 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
FBXO40 MUTATED 4 5 6 6
FBXO40 WILD-TYPE 108 91 86 180
'FBXO40 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00094 (Fisher's exact test), Q value = 0.023

Table S15196.  Gene #1436: 'FBXO40 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
FBXO40 MUTATED 2 0 8 3 3 1 4
FBXO40 WILD-TYPE 58 50 41 37 60 124 95

Figure S3893.  Get High-res Image Gene #1436: 'FBXO40 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'FBXO40 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.296 (Fisher's exact test), Q value = 0.63

Table S15197.  Gene #1436: 'FBXO40 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
FBXO40 MUTATED 9 3 3 5
FBXO40 WILD-TYPE 121 75 65 191
'FBXO40 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.241 (Fisher's exact test), Q value = 0.56

Table S15198.  Gene #1436: 'FBXO40 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
FBXO40 MUTATED 2 4 2 3 6 0 2 0 1
FBXO40 WILD-TYPE 38 58 26 77 63 48 41 28 73
'FBXO40 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0247 (Fisher's exact test), Q value = 0.16

Table S15199.  Gene #1436: 'FBXO40 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
FBXO40 MUTATED 1 0 0 3
FBXO40 WILD-TYPE 32 31 27 16

Figure S3894.  Get High-res Image Gene #1436: 'FBXO40 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'FBXO40 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S15200.  Gene #1436: 'FBXO40 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
FBXO40 MUTATED 2 0 1 1
FBXO40 WILD-TYPE 52 10 23 21
'ARHGAP29 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0987 (Fisher's exact test), Q value = 0.35

Table S15201.  Gene #1437: 'ARHGAP29 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ARHGAP29 MUTATED 2 1 0 3
ARHGAP29 WILD-TYPE 44 57 64 40
'ARHGAP29 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.337 (Fisher's exact test), Q value = 0.66

Table S15202.  Gene #1437: 'ARHGAP29 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ARHGAP29 MUTATED 3 2 1
ARHGAP29 WILD-TYPE 48 81 76
'ARHGAP29 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00705 (Fisher's exact test), Q value = 0.077

Table S15203.  Gene #1437: 'ARHGAP29 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ARHGAP29 MUTATED 14 3 1 1
ARHGAP29 WILD-TYPE 164 180 100 19

Figure S3895.  Get High-res Image Gene #1437: 'ARHGAP29 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ARHGAP29 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.243 (Fisher's exact test), Q value = 0.57

Table S15204.  Gene #1437: 'ARHGAP29 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ARHGAP29 MUTATED 3 2 8
ARHGAP29 WILD-TYPE 84 78 92
'ARHGAP29 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.287 (Fisher's exact test), Q value = 0.62

Table S15205.  Gene #1437: 'ARHGAP29 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ARHGAP29 MUTATED 1 8 6
ARHGAP29 WILD-TYPE 88 152 132
'ARHGAP29 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.178 (Fisher's exact test), Q value = 0.48

Table S15206.  Gene #1437: 'ARHGAP29 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ARHGAP29 MUTATED 4 6 5
ARHGAP29 WILD-TYPE 178 127 67
'ARHGAP29 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0403 (Fisher's exact test), Q value = 0.21

Table S15207.  Gene #1437: 'ARHGAP29 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ARHGAP29 MUTATED 2 9 2 6
ARHGAP29 WILD-TYPE 110 87 90 180

Figure S3896.  Get High-res Image Gene #1437: 'ARHGAP29 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'ARHGAP29 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0114 (Fisher's exact test), Q value = 0.1

Table S15208.  Gene #1437: 'ARHGAP29 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ARHGAP29 MUTATED 1 3 6 3 1 1 4
ARHGAP29 WILD-TYPE 59 47 43 37 62 124 95

Figure S3897.  Get High-res Image Gene #1437: 'ARHGAP29 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ARHGAP29 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.603 (Fisher's exact test), Q value = 0.91

Table S15209.  Gene #1437: 'ARHGAP29 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ARHGAP29 MUTATED 8 2 2 7
ARHGAP29 WILD-TYPE 122 76 66 189
'ARHGAP29 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00346 (Fisher's exact test), Q value = 0.053

Table S15210.  Gene #1437: 'ARHGAP29 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ARHGAP29 MUTATED 2 1 2 1 6 0 5 2 0
ARHGAP29 WILD-TYPE 38 61 26 79 63 48 38 26 74

Figure S3898.  Get High-res Image Gene #1437: 'ARHGAP29 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'ARHGAP29 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.699 (Fisher's exact test), Q value = 0.97

Table S15211.  Gene #1437: 'ARHGAP29 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
ARHGAP29 MUTATED 2 1 0 1
ARHGAP29 WILD-TYPE 31 30 27 18
'ARHGAP29 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S15212.  Gene #1437: 'ARHGAP29 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
ARHGAP29 MUTATED 2 0 1 1
ARHGAP29 WILD-TYPE 52 10 23 21
'PAK2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.167 (Fisher's exact test), Q value = 0.46

Table S15213.  Gene #1438: 'PAK2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
PAK2 MUTATED 8 2 1 0
PAK2 WILD-TYPE 170 181 100 20
'PAK2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.438 (Fisher's exact test), Q value = 0.77

Table S15214.  Gene #1438: 'PAK2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
PAK2 MUTATED 3 1 5
PAK2 WILD-TYPE 84 79 95
'PAK2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.603 (Fisher's exact test), Q value = 0.91

Table S15215.  Gene #1438: 'PAK2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
PAK2 MUTATED 1 4 5
PAK2 WILD-TYPE 88 156 133
'PAK2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.766 (Fisher's exact test), Q value = 1

Table S15216.  Gene #1438: 'PAK2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
PAK2 MUTATED 6 3 1
PAK2 WILD-TYPE 176 130 71
'PAK2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.333 (Fisher's exact test), Q value = 0.66

Table S15217.  Gene #1438: 'PAK2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
PAK2 MUTATED 1 4 3 3
PAK2 WILD-TYPE 111 92 89 183
'PAK2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.126 (Fisher's exact test), Q value = 0.39

Table S15218.  Gene #1438: 'PAK2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
PAK2 MUTATED 2 1 4 1 1 1 1
PAK2 WILD-TYPE 58 49 45 39 62 124 98
'PAK2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.429 (Fisher's exact test), Q value = 0.76

Table S15219.  Gene #1438: 'PAK2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
PAK2 MUTATED 5 2 0 4
PAK2 WILD-TYPE 125 76 68 192
'PAK2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.165 (Fisher's exact test), Q value = 0.46

Table S15220.  Gene #1438: 'PAK2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
PAK2 MUTATED 0 2 1 2 5 0 1 0 0
PAK2 WILD-TYPE 40 60 27 78 64 48 42 28 74
'MAOA MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.629 (Fisher's exact test), Q value = 0.92

Table S15221.  Gene #1439: 'MAOA MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
MAOA MUTATED 1 1 0 1
MAOA WILD-TYPE 45 57 64 42
'MAOA MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.252 (Fisher's exact test), Q value = 0.58

Table S15222.  Gene #1439: 'MAOA MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
MAOA MUTATED 2 1 0
MAOA WILD-TYPE 49 82 77
'MAOA MUTATION STATUS' versus 'CN_CNMF'

P value = 0.848 (Fisher's exact test), Q value = 1

Table S15223.  Gene #1439: 'MAOA MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
MAOA MUTATED 3 2 2 0
MAOA WILD-TYPE 175 181 99 20
'MAOA MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.69 (Fisher's exact test), Q value = 0.97

Table S15224.  Gene #1439: 'MAOA MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
MAOA MUTATED 1 2 1
MAOA WILD-TYPE 86 78 99
'MAOA MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.617 (Fisher's exact test), Q value = 0.92

Table S15225.  Gene #1439: 'MAOA MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
MAOA MUTATED 1 2 4
MAOA WILD-TYPE 88 158 134
'MAOA MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0846 (Fisher's exact test), Q value = 0.31

Table S15226.  Gene #1439: 'MAOA MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
MAOA MUTATED 5 0 2
MAOA WILD-TYPE 177 133 70
'MAOA MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.795 (Fisher's exact test), Q value = 1

Table S15227.  Gene #1439: 'MAOA MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
MAOA MUTATED 2 1 2 2
MAOA WILD-TYPE 110 95 90 184
'MAOA MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.753 (Fisher's exact test), Q value = 1

Table S15228.  Gene #1439: 'MAOA MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
MAOA MUTATED 2 0 1 0 1 1 2
MAOA WILD-TYPE 58 50 48 40 62 124 97
'MAOA MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.672 (Fisher's exact test), Q value = 0.95

Table S15229.  Gene #1439: 'MAOA MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
MAOA MUTATED 1 2 1 2
MAOA WILD-TYPE 129 76 67 194
'MAOA MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.562 (Fisher's exact test), Q value = 0.87

Table S15230.  Gene #1439: 'MAOA MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
MAOA MUTATED 0 2 1 0 1 0 1 0 1
MAOA WILD-TYPE 40 60 27 80 68 48 42 28 73
'FAM120C MUTATION STATUS' versus 'CN_CNMF'

P value = 0.165 (Fisher's exact test), Q value = 0.46

Table S15231.  Gene #1440: 'FAM120C MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
FAM120C MUTATED 6 2 0 0
FAM120C WILD-TYPE 172 181 101 20
'FAM120C MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.878 (Fisher's exact test), Q value = 1

Table S15232.  Gene #1440: 'FAM120C MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
FAM120C MUTATED 2 1 3
FAM120C WILD-TYPE 85 79 97
'FAM120C MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.577 (Fisher's exact test), Q value = 0.88

Table S15233.  Gene #1440: 'FAM120C MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
FAM120C MUTATED 1 4 1
FAM120C WILD-TYPE 88 156 137
'FAM120C MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0886 (Fisher's exact test), Q value = 0.32

Table S15234.  Gene #1440: 'FAM120C MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
FAM120C MUTATED 1 2 3
FAM120C WILD-TYPE 181 131 69
'FAM120C MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.23 (Fisher's exact test), Q value = 0.55

Table S15235.  Gene #1440: 'FAM120C MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
FAM120C MUTATED 3 3 0 2
FAM120C WILD-TYPE 109 93 92 184
'FAM120C MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.789 (Fisher's exact test), Q value = 1

Table S15236.  Gene #1440: 'FAM120C MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
FAM120C MUTATED 1 1 1 1 2 1 1
FAM120C WILD-TYPE 59 49 48 39 61 124 98
'FAM120C MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.206 (Fisher's exact test), Q value = 0.51

Table S15237.  Gene #1440: 'FAM120C MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
FAM120C MUTATED 5 1 0 2
FAM120C WILD-TYPE 125 77 68 194
'FAM120C MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.382 (Fisher's exact test), Q value = 0.71

Table S15238.  Gene #1440: 'FAM120C MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
FAM120C MUTATED 1 0 0 3 2 2 0 0 0
FAM120C WILD-TYPE 39 62 28 77 67 46 43 28 74
'MED13 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00541 (Fisher's exact test), Q value = 0.066

Table S15239.  Gene #1441: 'MED13 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
MED13 MUTATED 2 0 0 4
MED13 WILD-TYPE 44 58 64 39

Figure S3899.  Get High-res Image Gene #1441: 'MED13 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'MED13 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0713 (Fisher's exact test), Q value = 0.29

Table S15240.  Gene #1441: 'MED13 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
MED13 MUTATED 4 1 1
MED13 WILD-TYPE 47 82 76
'MED13 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00023 (Fisher's exact test), Q value = 0.0091

Table S15241.  Gene #1441: 'MED13 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
MED13 MUTATED 18 4 0 0
MED13 WILD-TYPE 160 179 101 20

Figure S3900.  Get High-res Image Gene #1441: 'MED13 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'MED13 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.528 (Fisher's exact test), Q value = 0.85

Table S15242.  Gene #1441: 'MED13 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
MED13 MUTATED 5 3 8
MED13 WILD-TYPE 82 77 92
'MED13 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.573 (Fisher's exact test), Q value = 0.88

Table S15243.  Gene #1441: 'MED13 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
MED13 MUTATED 3 7 9
MED13 WILD-TYPE 86 153 129
'MED13 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S15244.  Gene #1441: 'MED13 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
MED13 MUTATED 9 7 3
MED13 WILD-TYPE 173 126 69
'MED13 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0437 (Fisher's exact test), Q value = 0.22

Table S15245.  Gene #1441: 'MED13 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
MED13 MUTATED 1 7 7 7
MED13 WILD-TYPE 111 89 85 179

Figure S3901.  Get High-res Image Gene #1441: 'MED13 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'MED13 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 2e-04 (Fisher's exact test), Q value = 0.0083

Table S15246.  Gene #1441: 'MED13 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
MED13 MUTATED 2 2 9 0 1 1 7
MED13 WILD-TYPE 58 48 40 40 62 124 92

Figure S3902.  Get High-res Image Gene #1441: 'MED13 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'MED13 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.358 (Fisher's exact test), Q value = 0.69

Table S15247.  Gene #1441: 'MED13 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
MED13 MUTATED 4 5 1 11
MED13 WILD-TYPE 126 73 67 185
'MED13 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 2e-04 (Fisher's exact test), Q value = 0.0083

Table S15248.  Gene #1441: 'MED13 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
MED13 MUTATED 0 5 1 0 10 0 2 2 1
MED13 WILD-TYPE 40 57 27 80 59 48 41 26 73

Figure S3903.  Get High-res Image Gene #1441: 'MED13 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'MED13 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.137 (Fisher's exact test), Q value = 0.41

Table S15249.  Gene #1441: 'MED13 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
MED13 MUTATED 1 0 0 2
MED13 WILD-TYPE 32 31 27 17
'MED13 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S15250.  Gene #1441: 'MED13 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
MED13 MUTATED 2 0 1 0
MED13 WILD-TYPE 52 10 23 22
'ALCAM MUTATION STATUS' versus 'CN_CNMF'

P value = 0.48 (Fisher's exact test), Q value = 0.81

Table S15251.  Gene #1442: 'ALCAM MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ALCAM MUTATED 7 4 1 0
ALCAM WILD-TYPE 171 179 100 20
'ALCAM MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.61 (Fisher's exact test), Q value = 0.91

Table S15252.  Gene #1442: 'ALCAM MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ALCAM MUTATED 2 3 5
ALCAM WILD-TYPE 85 77 95
'ALCAM MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.539 (Fisher's exact test), Q value = 0.86

Table S15253.  Gene #1442: 'ALCAM MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ALCAM MUTATED 1 6 4
ALCAM WILD-TYPE 88 154 134
'ALCAM MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.783 (Fisher's exact test), Q value = 1

Table S15254.  Gene #1442: 'ALCAM MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ALCAM MUTATED 5 5 1
ALCAM WILD-TYPE 177 128 71
'ALCAM MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.15 (Fisher's exact test), Q value = 0.43

Table S15255.  Gene #1442: 'ALCAM MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ALCAM MUTATED 2 3 5 2
ALCAM WILD-TYPE 110 93 87 184
'ALCAM MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0487 (Fisher's exact test), Q value = 0.24

Table S15256.  Gene #1442: 'ALCAM MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ALCAM MUTATED 1 1 3 1 4 0 2
ALCAM WILD-TYPE 59 49 46 39 59 125 97

Figure S3904.  Get High-res Image Gene #1442: 'ALCAM MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ALCAM MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.034 (Fisher's exact test), Q value = 0.19

Table S15257.  Gene #1442: 'ALCAM MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ALCAM MUTATED 6 4 0 2
ALCAM WILD-TYPE 124 74 68 194

Figure S3905.  Get High-res Image Gene #1442: 'ALCAM MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'ALCAM MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.317 (Fisher's exact test), Q value = 0.65

Table S15258.  Gene #1442: 'ALCAM MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ALCAM MUTATED 2 4 0 2 2 1 0 1 0
ALCAM WILD-TYPE 38 58 28 78 67 47 43 27 74
'ALCAM MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0579 (Fisher's exact test), Q value = 0.26

Table S15259.  Gene #1442: 'ALCAM MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
ALCAM MUTATED 0 1 1 3
ALCAM WILD-TYPE 33 30 26 16
'ALCAM MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.291 (Fisher's exact test), Q value = 0.62

Table S15260.  Gene #1442: 'ALCAM MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
ALCAM MUTATED 1 1 2 1
ALCAM WILD-TYPE 53 9 22 21
'MEGF8 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00531 (Fisher's exact test), Q value = 0.066

Table S15261.  Gene #1443: 'MEGF8 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
MEGF8 MUTATED 4 0 0 3
MEGF8 WILD-TYPE 42 58 64 40

Figure S3906.  Get High-res Image Gene #1443: 'MEGF8 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'MEGF8 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0156 (Fisher's exact test), Q value = 0.12

Table S15262.  Gene #1443: 'MEGF8 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
MEGF8 MUTATED 5 1 1
MEGF8 WILD-TYPE 46 82 76

Figure S3907.  Get High-res Image Gene #1443: 'MEGF8 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'MEGF8 MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S15263.  Gene #1443: 'MEGF8 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
MEGF8 MUTATED 26 0 0 0
MEGF8 WILD-TYPE 152 183 101 20

Figure S3908.  Get High-res Image Gene #1443: 'MEGF8 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'MEGF8 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 8e-05 (Fisher's exact test), Q value = 0.0045

Table S15264.  Gene #1443: 'MEGF8 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
MEGF8 MUTATED 4 0 15
MEGF8 WILD-TYPE 83 80 85

Figure S3909.  Get High-res Image Gene #1443: 'MEGF8 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'MEGF8 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.091 (Fisher's exact test), Q value = 0.33

Table S15265.  Gene #1443: 'MEGF8 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
MEGF8 MUTATED 2 9 13
MEGF8 WILD-TYPE 87 151 125
'MEGF8 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.447 (Fisher's exact test), Q value = 0.77

Table S15266.  Gene #1443: 'MEGF8 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
MEGF8 MUTATED 13 9 2
MEGF8 WILD-TYPE 169 124 70
'MEGF8 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00027 (Fisher's exact test), Q value = 0.01

Table S15267.  Gene #1443: 'MEGF8 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
MEGF8 MUTATED 0 12 7 8
MEGF8 WILD-TYPE 112 84 85 178

Figure S3910.  Get High-res Image Gene #1443: 'MEGF8 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'MEGF8 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S15268.  Gene #1443: 'MEGF8 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
MEGF8 MUTATED 2 1 15 0 1 0 8
MEGF8 WILD-TYPE 58 49 34 40 62 125 91

Figure S3911.  Get High-res Image Gene #1443: 'MEGF8 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'MEGF8 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.184 (Fisher's exact test), Q value = 0.48

Table S15269.  Gene #1443: 'MEGF8 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
MEGF8 MUTATED 12 2 2 11
MEGF8 WILD-TYPE 118 76 66 185
'MEGF8 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S15270.  Gene #1443: 'MEGF8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
MEGF8 MUTATED 2 6 2 1 15 0 0 1 0
MEGF8 WILD-TYPE 38 56 26 79 54 48 43 27 74

Figure S3912.  Get High-res Image Gene #1443: 'MEGF8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'MEGF8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0724 (Fisher's exact test), Q value = 0.29

Table S15271.  Gene #1443: 'MEGF8 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
MEGF8 MUTATED 1 0 1 3
MEGF8 WILD-TYPE 32 31 26 16
'MEGF8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.192 (Fisher's exact test), Q value = 0.49

Table S15272.  Gene #1443: 'MEGF8 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
MEGF8 MUTATED 2 0 3 0
MEGF8 WILD-TYPE 52 10 21 22
'SLIT3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.497 (Fisher's exact test), Q value = 0.82

Table S15273.  Gene #1444: 'SLIT3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
SLIT3 MUTATED 3 1 2 3
SLIT3 WILD-TYPE 43 57 62 40
'SLIT3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.34 (Fisher's exact test), Q value = 0.67

Table S15274.  Gene #1444: 'SLIT3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
SLIT3 MUTATED 4 2 3
SLIT3 WILD-TYPE 47 81 74
'SLIT3 MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S15275.  Gene #1444: 'SLIT3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
SLIT3 MUTATED 22 5 0 0
SLIT3 WILD-TYPE 156 178 101 20

Figure S3913.  Get High-res Image Gene #1444: 'SLIT3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'SLIT3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0766 (Fisher's exact test), Q value = 0.3

Table S15276.  Gene #1444: 'SLIT3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
SLIT3 MUTATED 5 2 11
SLIT3 WILD-TYPE 82 78 89
'SLIT3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.505 (Fisher's exact test), Q value = 0.83

Table S15277.  Gene #1444: 'SLIT3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
SLIT3 MUTATED 3 11 10
SLIT3 WILD-TYPE 86 149 128
'SLIT3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S15278.  Gene #1444: 'SLIT3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
SLIT3 MUTATED 12 8 4
SLIT3 WILD-TYPE 170 125 68
'SLIT3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.165 (Fisher's exact test), Q value = 0.46

Table S15279.  Gene #1444: 'SLIT3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
SLIT3 MUTATED 4 10 5 8
SLIT3 WILD-TYPE 108 86 87 178
'SLIT3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00868 (Fisher's exact test), Q value = 0.087

Table S15280.  Gene #1444: 'SLIT3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
SLIT3 MUTATED 2 5 9 1 2 4 4
SLIT3 WILD-TYPE 58 45 40 39 61 121 95

Figure S3914.  Get High-res Image Gene #1444: 'SLIT3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'SLIT3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.13 (Fisher's exact test), Q value = 0.4

Table S15281.  Gene #1444: 'SLIT3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
SLIT3 MUTATED 12 3 1 10
SLIT3 WILD-TYPE 118 75 67 186
'SLIT3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0408 (Fisher's exact test), Q value = 0.21

Table S15282.  Gene #1444: 'SLIT3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
SLIT3 MUTATED 3 4 1 3 9 1 3 2 0
SLIT3 WILD-TYPE 37 58 27 77 60 47 40 26 74

Figure S3915.  Get High-res Image Gene #1444: 'SLIT3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'SLIT3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.667 (Fisher's exact test), Q value = 0.95

Table S15283.  Gene #1444: 'SLIT3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
SLIT3 MUTATED 1 1 1 2
SLIT3 WILD-TYPE 32 30 26 17
'SLIT3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.58 (Fisher's exact test), Q value = 0.89

Table S15284.  Gene #1444: 'SLIT3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
SLIT3 MUTATED 3 0 2 0
SLIT3 WILD-TYPE 51 10 22 22
'KIF14 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0058 (Fisher's exact test), Q value = 0.069

Table S15285.  Gene #1445: 'KIF14 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
KIF14 MUTATED 2 0 0 4
KIF14 WILD-TYPE 44 58 64 39

Figure S3916.  Get High-res Image Gene #1445: 'KIF14 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'KIF14 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.244 (Fisher's exact test), Q value = 0.57

Table S15286.  Gene #1445: 'KIF14 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
KIF14 MUTATED 3 1 2
KIF14 WILD-TYPE 48 82 75
'KIF14 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0293 (Fisher's exact test), Q value = 0.17

Table S15287.  Gene #1445: 'KIF14 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
KIF14 MUTATED 9 1 2 1
KIF14 WILD-TYPE 169 182 99 19

Figure S3917.  Get High-res Image Gene #1445: 'KIF14 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'KIF14 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.179 (Fisher's exact test), Q value = 0.48

Table S15288.  Gene #1445: 'KIF14 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
KIF14 MUTATED 4 0 3
KIF14 WILD-TYPE 83 80 97
'KIF14 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S15289.  Gene #1445: 'KIF14 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
KIF14 MUTATED 2 4 3
KIF14 WILD-TYPE 87 156 135
'KIF14 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.911 (Fisher's exact test), Q value = 1

Table S15290.  Gene #1445: 'KIF14 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
KIF14 MUTATED 4 3 2
KIF14 WILD-TYPE 178 130 70
'KIF14 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.106 (Fisher's exact test), Q value = 0.36

Table S15291.  Gene #1445: 'KIF14 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
KIF14 MUTATED 0 2 4 7
KIF14 WILD-TYPE 112 94 88 179
'KIF14 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0519 (Fisher's exact test), Q value = 0.25

Table S15292.  Gene #1445: 'KIF14 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
KIF14 MUTATED 3 1 1 0 2 0 6
KIF14 WILD-TYPE 57 49 48 40 61 125 93
'KIF14 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.519 (Fisher's exact test), Q value = 0.84

Table S15293.  Gene #1445: 'KIF14 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
KIF14 MUTATED 3 3 0 6
KIF14 WILD-TYPE 127 75 68 190
'KIF14 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0494 (Fisher's exact test), Q value = 0.24

Table S15294.  Gene #1445: 'KIF14 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
KIF14 MUTATED 3 1 3 1 3 0 0 0 1
KIF14 WILD-TYPE 37 61 25 79 66 48 43 28 73

Figure S3918.  Get High-res Image Gene #1445: 'KIF14 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'KIF14 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.872 (Fisher's exact test), Q value = 1

Table S15295.  Gene #1445: 'KIF14 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
KIF14 MUTATED 1 1 0 1
KIF14 WILD-TYPE 32 30 27 18
'KIF14 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S15296.  Gene #1445: 'KIF14 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
KIF14 MUTATED 2 0 1 0
KIF14 WILD-TYPE 52 10 23 22
'CDKL2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0158 (Fisher's exact test), Q value = 0.12

Table S15297.  Gene #1446: 'CDKL2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
CDKL2 MUTATED 1 0 0 3
CDKL2 WILD-TYPE 45 58 64 40

Figure S3919.  Get High-res Image Gene #1446: 'CDKL2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'CDKL2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.233 (Fisher's exact test), Q value = 0.55

Table S15298.  Gene #1446: 'CDKL2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
CDKL2 MUTATED 2 2 0
CDKL2 WILD-TYPE 49 81 77
'CDKL2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0299 (Fisher's exact test), Q value = 0.18

Table S15299.  Gene #1446: 'CDKL2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
CDKL2 MUTATED 9 2 0 0
CDKL2 WILD-TYPE 169 181 101 20

Figure S3920.  Get High-res Image Gene #1446: 'CDKL2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'CDKL2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.183 (Fisher's exact test), Q value = 0.48

Table S15300.  Gene #1446: 'CDKL2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
CDKL2 MUTATED 4 0 3
CDKL2 WILD-TYPE 83 80 97
'CDKL2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.795 (Fisher's exact test), Q value = 1

Table S15301.  Gene #1446: 'CDKL2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
CDKL2 MUTATED 1 4 2
CDKL2 WILD-TYPE 88 156 136
'CDKL2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.885 (Fisher's exact test), Q value = 1

Table S15302.  Gene #1446: 'CDKL2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
CDKL2 MUTATED 3 3 1
CDKL2 WILD-TYPE 179 130 71
'CDKL2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.51 (Fisher's exact test), Q value = 0.83

Table S15303.  Gene #1446: 'CDKL2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
CDKL2 MUTATED 1 4 2 4
CDKL2 WILD-TYPE 111 92 90 182
'CDKL2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.559 (Fisher's exact test), Q value = 0.87

Table S15304.  Gene #1446: 'CDKL2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
CDKL2 MUTATED 1 2 2 0 2 1 3
CDKL2 WILD-TYPE 59 48 47 40 61 124 96
'CDKL2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.426 (Fisher's exact test), Q value = 0.75

Table S15305.  Gene #1446: 'CDKL2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
CDKL2 MUTATED 5 2 0 4
CDKL2 WILD-TYPE 125 76 68 192
'CDKL2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.11 (Fisher's exact test), Q value = 0.37

Table S15306.  Gene #1446: 'CDKL2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
CDKL2 MUTATED 0 2 3 1 3 1 1 0 0
CDKL2 WILD-TYPE 40 60 25 79 66 47 42 28 74
'ITGA5 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0463 (Fisher's exact test), Q value = 0.23

Table S15307.  Gene #1447: 'ITGA5 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ITGA5 MUTATED 4 1 0 1
ITGA5 WILD-TYPE 42 57 64 42

Figure S3921.  Get High-res Image Gene #1447: 'ITGA5 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'ITGA5 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0224 (Fisher's exact test), Q value = 0.15

Table S15308.  Gene #1447: 'ITGA5 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ITGA5 MUTATED 4 2 0
ITGA5 WILD-TYPE 47 81 77

Figure S3922.  Get High-res Image Gene #1447: 'ITGA5 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'ITGA5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0309 (Fisher's exact test), Q value = 0.18

Table S15309.  Gene #1447: 'ITGA5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ITGA5 MUTATED 12 2 3 0
ITGA5 WILD-TYPE 166 181 98 20

Figure S3923.  Get High-res Image Gene #1447: 'ITGA5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ITGA5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.742 (Fisher's exact test), Q value = 1

Table S15310.  Gene #1447: 'ITGA5 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ITGA5 MUTATED 4 2 5
ITGA5 WILD-TYPE 83 78 95
'ITGA5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.265 (Fisher's exact test), Q value = 0.59

Table S15311.  Gene #1447: 'ITGA5 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ITGA5 MUTATED 1 8 7
ITGA5 WILD-TYPE 88 152 131
'ITGA5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.469 (Fisher's exact test), Q value = 0.8

Table S15312.  Gene #1447: 'ITGA5 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ITGA5 MUTATED 8 7 1
ITGA5 WILD-TYPE 174 126 71
'ITGA5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.361 (Fisher's exact test), Q value = 0.69

Table S15313.  Gene #1447: 'ITGA5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ITGA5 MUTATED 4 6 3 4
ITGA5 WILD-TYPE 108 90 89 182
'ITGA5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0152 (Fisher's exact test), Q value = 0.12

Table S15314.  Gene #1447: 'ITGA5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ITGA5 MUTATED 1 4 4 1 0 1 6
ITGA5 WILD-TYPE 59 46 45 39 63 124 93

Figure S3924.  Get High-res Image Gene #1447: 'ITGA5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ITGA5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.739 (Fisher's exact test), Q value = 1

Table S15315.  Gene #1447: 'ITGA5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ITGA5 MUTATED 6 2 1 6
ITGA5 WILD-TYPE 124 76 67 190
'ITGA5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.121 (Fisher's exact test), Q value = 0.39

Table S15316.  Gene #1447: 'ITGA5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ITGA5 MUTATED 1 3 2 0 1 3 2 2 1
ITGA5 WILD-TYPE 39 59 26 80 68 45 41 26 73
'SULT1C4 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00838 (Fisher's exact test), Q value = 0.085

Table S15317.  Gene #1448: 'SULT1C4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
SULT1C4 MUTATED 0 0 0 3
SULT1C4 WILD-TYPE 46 58 64 40

Figure S3925.  Get High-res Image Gene #1448: 'SULT1C4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'SULT1C4 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0132 (Fisher's exact test), Q value = 0.11

Table S15318.  Gene #1448: 'SULT1C4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
SULT1C4 MUTATED 3 0 0
SULT1C4 WILD-TYPE 48 83 77

Figure S3926.  Get High-res Image Gene #1448: 'SULT1C4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'SULT1C4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.276 (Fisher's exact test), Q value = 0.6

Table S15319.  Gene #1448: 'SULT1C4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
SULT1C4 MUTATED 3 0 0 0
SULT1C4 WILD-TYPE 175 183 101 20
'SULT1C4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.896 (Fisher's exact test), Q value = 1

Table S15320.  Gene #1448: 'SULT1C4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
SULT1C4 MUTATED 1 0 0 2
SULT1C4 WILD-TYPE 111 96 92 184
'SULT1C4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.311 (Fisher's exact test), Q value = 0.64

Table S15321.  Gene #1448: 'SULT1C4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
SULT1C4 MUTATED 0 1 0 0 0 0 2
SULT1C4 WILD-TYPE 60 49 49 40 63 125 97
'C6ORF146 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0645 (Fisher's exact test), Q value = 0.28

Table S15322.  Gene #1449: 'C6ORF146 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
C6ORF146 MUTATED 1 0 0 2
C6ORF146 WILD-TYPE 45 58 64 41
'C6ORF146 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.183 (Fisher's exact test), Q value = 0.48

Table S15323.  Gene #1449: 'C6ORF146 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
C6ORF146 MUTATED 2 0 1
C6ORF146 WILD-TYPE 49 83 76
'C6ORF146 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00472 (Fisher's exact test), Q value = 0.062

Table S15324.  Gene #1449: 'C6ORF146 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
C6ORF146 MUTATED 8 0 0 0
C6ORF146 WILD-TYPE 170 183 101 20

Figure S3927.  Get High-res Image Gene #1449: 'C6ORF146 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'C6ORF146 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.385 (Fisher's exact test), Q value = 0.71

Table S15325.  Gene #1449: 'C6ORF146 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
C6ORF146 MUTATED 2 0 3
C6ORF146 WILD-TYPE 85 80 97
'C6ORF146 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0705 (Fisher's exact test), Q value = 0.29

Table S15326.  Gene #1449: 'C6ORF146 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
C6ORF146 MUTATED 0 2 6
C6ORF146 WILD-TYPE 89 158 132
'C6ORF146 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.895 (Fisher's exact test), Q value = 1

Table S15327.  Gene #1449: 'C6ORF146 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
C6ORF146 MUTATED 5 2 1
C6ORF146 WILD-TYPE 177 131 71
'C6ORF146 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.29 (Fisher's exact test), Q value = 0.62

Table S15328.  Gene #1449: 'C6ORF146 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
C6ORF146 MUTATED 0 3 2 3
C6ORF146 WILD-TYPE 112 93 90 183
'C6ORF146 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0188 (Fisher's exact test), Q value = 0.14

Table S15329.  Gene #1449: 'C6ORF146 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
C6ORF146 MUTATED 1 0 4 0 1 0 2
C6ORF146 WILD-TYPE 59 50 45 40 62 125 97

Figure S3928.  Get High-res Image Gene #1449: 'C6ORF146 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'C6ORF146 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.483 (Fisher's exact test), Q value = 0.81

Table S15330.  Gene #1449: 'C6ORF146 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
C6ORF146 MUTATED 3 2 0 2
C6ORF146 WILD-TYPE 127 76 68 194
'C6ORF146 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0793 (Fisher's exact test), Q value = 0.3

Table S15331.  Gene #1449: 'C6ORF146 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
C6ORF146 MUTATED 0 2 0 0 4 0 1 0 0
C6ORF146 WILD-TYPE 40 60 28 80 65 48 42 28 74
'DYM MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00819 (Fisher's exact test), Q value = 0.084

Table S15332.  Gene #1450: 'DYM MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
DYM MUTATED 0 0 0 3
DYM WILD-TYPE 46 58 64 40

Figure S3929.  Get High-res Image Gene #1450: 'DYM MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'DYM MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S15333.  Gene #1450: 'DYM MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
DYM MUTATED 1 1 1
DYM WILD-TYPE 50 82 76
'DYM MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0636 (Fisher's exact test), Q value = 0.27

Table S15334.  Gene #1450: 'DYM MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
DYM MUTATED 8 1 1 0
DYM WILD-TYPE 170 182 100 20
'DYM MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.445 (Fisher's exact test), Q value = 0.77

Table S15335.  Gene #1450: 'DYM MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
DYM MUTATED 4 1 2
DYM WILD-TYPE 83 79 98
'DYM MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S15336.  Gene #1450: 'DYM MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
DYM MUTATED 2 4 4
DYM WILD-TYPE 87 156 134
'DYM MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.328 (Fisher's exact test), Q value = 0.66

Table S15337.  Gene #1450: 'DYM MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
DYM MUTATED 5 5 0
DYM WILD-TYPE 177 128 72
'DYM MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.169 (Fisher's exact test), Q value = 0.46

Table S15338.  Gene #1450: 'DYM MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
DYM MUTATED 1 5 1 3
DYM WILD-TYPE 111 91 91 183
'DYM MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.232 (Fisher's exact test), Q value = 0.55

Table S15339.  Gene #1450: 'DYM MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
DYM MUTATED 0 3 2 1 1 1 2
DYM WILD-TYPE 60 47 47 39 62 124 97
'DYM MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.327 (Fisher's exact test), Q value = 0.66

Table S15340.  Gene #1450: 'DYM MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
DYM MUTATED 4 2 0 2
DYM WILD-TYPE 126 76 68 194
'DYM MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.316 (Fisher's exact test), Q value = 0.64

Table S15341.  Gene #1450: 'DYM MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
DYM MUTATED 1 2 2 0 1 1 0 0 1
DYM WILD-TYPE 39 60 26 80 68 47 43 28 73
'PCDH9 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.338 (Fisher's exact test), Q value = 0.67

Table S15342.  Gene #1451: 'PCDH9 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
PCDH9 MUTATED 6 5 4 7
PCDH9 WILD-TYPE 40 53 60 36
'PCDH9 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.287 (Fisher's exact test), Q value = 0.62

Table S15343.  Gene #1451: 'PCDH9 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
PCDH9 MUTATED 8 6 8
PCDH9 WILD-TYPE 43 77 69
'PCDH9 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0298 (Fisher's exact test), Q value = 0.18

Table S15344.  Gene #1451: 'PCDH9 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
PCDH9 MUTATED 25 11 8 0
PCDH9 WILD-TYPE 153 172 93 20

Figure S3930.  Get High-res Image Gene #1451: 'PCDH9 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'PCDH9 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.289 (Fisher's exact test), Q value = 0.62

Table S15345.  Gene #1451: 'PCDH9 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
PCDH9 MUTATED 10 4 10
PCDH9 WILD-TYPE 77 76 90
'PCDH9 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.193 (Fisher's exact test), Q value = 0.5

Table S15346.  Gene #1451: 'PCDH9 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
PCDH9 MUTATED 4 18 12
PCDH9 WILD-TYPE 85 142 126
'PCDH9 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.703 (Fisher's exact test), Q value = 0.97

Table S15347.  Gene #1451: 'PCDH9 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
PCDH9 MUTATED 15 14 5
PCDH9 WILD-TYPE 167 119 67
'PCDH9 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.191 (Fisher's exact test), Q value = 0.49

Table S15348.  Gene #1451: 'PCDH9 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
PCDH9 MUTATED 7 11 5 22
PCDH9 WILD-TYPE 105 85 87 164
'PCDH9 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0697 (Fisher's exact test), Q value = 0.28

Table S15349.  Gene #1451: 'PCDH9 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
PCDH9 MUTATED 4 3 9 2 3 9 15
PCDH9 WILD-TYPE 56 47 40 38 60 116 84
'PCDH9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.742 (Fisher's exact test), Q value = 1

Table S15350.  Gene #1451: 'PCDH9 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
PCDH9 MUTATED 11 8 4 20
PCDH9 WILD-TYPE 119 70 64 176
'PCDH9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.442 (Fisher's exact test), Q value = 0.77

Table S15351.  Gene #1451: 'PCDH9 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
PCDH9 MUTATED 3 7 2 3 10 6 2 3 7
PCDH9 WILD-TYPE 37 55 26 77 59 42 41 25 67
'PCDH9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.358 (Fisher's exact test), Q value = 0.69

Table S15352.  Gene #1451: 'PCDH9 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
PCDH9 MUTATED 1 1 0 2
PCDH9 WILD-TYPE 32 30 27 17
'PCDH9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.869 (Fisher's exact test), Q value = 1

Table S15353.  Gene #1451: 'PCDH9 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
PCDH9 MUTATED 3 0 1 0
PCDH9 WILD-TYPE 51 10 23 22
'MRE11A MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00838 (Fisher's exact test), Q value = 0.085

Table S15354.  Gene #1452: 'MRE11A MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
MRE11A MUTATED 0 0 0 3
MRE11A WILD-TYPE 46 58 64 40

Figure S3931.  Get High-res Image Gene #1452: 'MRE11A MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'MRE11A MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.349 (Fisher's exact test), Q value = 0.68

Table S15355.  Gene #1452: 'MRE11A MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
MRE11A MUTATED 1 0 2
MRE11A WILD-TYPE 50 83 75
'MRE11A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00032 (Fisher's exact test), Q value = 0.011

Table S15356.  Gene #1452: 'MRE11A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
MRE11A MUTATED 13 1 0 0
MRE11A WILD-TYPE 165 182 101 20

Figure S3932.  Get High-res Image Gene #1452: 'MRE11A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'MRE11A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.314 (Fisher's exact test), Q value = 0.64

Table S15357.  Gene #1452: 'MRE11A MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
MRE11A MUTATED 5 1 5
MRE11A WILD-TYPE 82 79 95
'MRE11A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.247 (Fisher's exact test), Q value = 0.57

Table S15358.  Gene #1452: 'MRE11A MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
MRE11A MUTATED 1 4 7
MRE11A WILD-TYPE 88 156 131
'MRE11A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.363 (Fisher's exact test), Q value = 0.69

Table S15359.  Gene #1452: 'MRE11A MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
MRE11A MUTATED 8 2 2
MRE11A WILD-TYPE 174 131 70
'MRE11A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0723 (Fisher's exact test), Q value = 0.29

Table S15360.  Gene #1452: 'MRE11A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
MRE11A MUTATED 1 5 5 3
MRE11A WILD-TYPE 111 91 87 183
'MRE11A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00201 (Fisher's exact test), Q value = 0.038

Table S15361.  Gene #1452: 'MRE11A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
MRE11A MUTATED 3 1 6 0 2 0 2
MRE11A WILD-TYPE 57 49 43 40 61 125 97

Figure S3933.  Get High-res Image Gene #1452: 'MRE11A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'MRE11A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.208 (Fisher's exact test), Q value = 0.52

Table S15362.  Gene #1452: 'MRE11A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
MRE11A MUTATED 6 3 0 4
MRE11A WILD-TYPE 124 75 68 192
'MRE11A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0515 (Fisher's exact test), Q value = 0.24

Table S15363.  Gene #1452: 'MRE11A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
MRE11A MUTATED 1 4 2 0 4 1 1 0 0
MRE11A WILD-TYPE 39 58 26 80 65 47 42 28 74
'MRE11A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.327 (Fisher's exact test), Q value = 0.66

Table S15364.  Gene #1452: 'MRE11A MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
MRE11A MUTATED 3 1 0 0
MRE11A WILD-TYPE 30 30 27 19
'MRE11A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.869 (Fisher's exact test), Q value = 1

Table S15365.  Gene #1452: 'MRE11A MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
MRE11A MUTATED 3 0 1 0
MRE11A WILD-TYPE 51 10 23 22
'CASP10 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.719 (Fisher's exact test), Q value = 0.99

Table S15366.  Gene #1453: 'CASP10 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
CASP10 MUTATED 4 2 1 0
CASP10 WILD-TYPE 174 181 100 20
'CASP10 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S15367.  Gene #1453: 'CASP10 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
CASP10 MUTATED 2 1 2
CASP10 WILD-TYPE 85 79 98
'CASP10 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.195 (Fisher's exact test), Q value = 0.5

Table S15368.  Gene #1453: 'CASP10 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
CASP10 MUTATED 0 5 2
CASP10 WILD-TYPE 89 155 136
'CASP10 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.681 (Fisher's exact test), Q value = 0.96

Table S15369.  Gene #1453: 'CASP10 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
CASP10 MUTATED 4 3 0
CASP10 WILD-TYPE 178 130 72
'CASP10 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.494 (Fisher's exact test), Q value = 0.82

Table S15370.  Gene #1453: 'CASP10 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
CASP10 MUTATED 2 2 2 1
CASP10 WILD-TYPE 110 94 90 185
'CASP10 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.405 (Fisher's exact test), Q value = 0.73

Table S15371.  Gene #1453: 'CASP10 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
CASP10 MUTATED 0 2 1 0 2 1 1
CASP10 WILD-TYPE 60 48 48 40 61 124 98
'CASP10 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.477 (Fisher's exact test), Q value = 0.81

Table S15372.  Gene #1453: 'CASP10 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
CASP10 MUTATED 3 2 0 2
CASP10 WILD-TYPE 127 76 68 194
'CASP10 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00441 (Fisher's exact test), Q value = 0.061

Table S15373.  Gene #1453: 'CASP10 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
CASP10 MUTATED 0 3 3 1 0 0 0 0 0
CASP10 WILD-TYPE 40 59 25 79 69 48 43 28 74

Figure S3934.  Get High-res Image Gene #1453: 'CASP10 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'TSHZ1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00358 (Fisher's exact test), Q value = 0.054

Table S15374.  Gene #1454: 'TSHZ1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
TSHZ1 MUTATED 1 0 0 4
TSHZ1 WILD-TYPE 45 58 64 39

Figure S3935.  Get High-res Image Gene #1454: 'TSHZ1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'TSHZ1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.253 (Fisher's exact test), Q value = 0.58

Table S15375.  Gene #1454: 'TSHZ1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
TSHZ1 MUTATED 3 1 1
TSHZ1 WILD-TYPE 48 82 76
'TSHZ1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00078 (Fisher's exact test), Q value = 0.021

Table S15376.  Gene #1454: 'TSHZ1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
TSHZ1 MUTATED 12 1 0 0
TSHZ1 WILD-TYPE 166 182 101 20

Figure S3936.  Get High-res Image Gene #1454: 'TSHZ1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'TSHZ1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.396 (Fisher's exact test), Q value = 0.72

Table S15377.  Gene #1454: 'TSHZ1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
TSHZ1 MUTATED 2 1 5
TSHZ1 WILD-TYPE 85 79 95
'TSHZ1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.112 (Fisher's exact test), Q value = 0.37

Table S15378.  Gene #1454: 'TSHZ1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
TSHZ1 MUTATED 0 5 6
TSHZ1 WILD-TYPE 89 155 132
'TSHZ1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.784 (Fisher's exact test), Q value = 1

Table S15379.  Gene #1454: 'TSHZ1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
TSHZ1 MUTATED 5 5 1
TSHZ1 WILD-TYPE 177 128 71
'TSHZ1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.335 (Fisher's exact test), Q value = 0.66

Table S15380.  Gene #1454: 'TSHZ1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
TSHZ1 MUTATED 1 5 2 5
TSHZ1 WILD-TYPE 111 91 90 181
'TSHZ1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00456 (Fisher's exact test), Q value = 0.061

Table S15381.  Gene #1454: 'TSHZ1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
TSHZ1 MUTATED 1 2 5 1 0 0 4
TSHZ1 WILD-TYPE 59 48 44 39 63 125 95

Figure S3937.  Get High-res Image Gene #1454: 'TSHZ1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'TSHZ1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.415 (Fisher's exact test), Q value = 0.74

Table S15382.  Gene #1454: 'TSHZ1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
TSHZ1 MUTATED 5 1 0 6
TSHZ1 WILD-TYPE 125 77 68 190
'TSHZ1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.502 (Fisher's exact test), Q value = 0.83

Table S15383.  Gene #1454: 'TSHZ1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
TSHZ1 MUTATED 2 1 1 1 4 0 1 1 1
TSHZ1 WILD-TYPE 38 61 27 79 65 48 42 27 73
'CCDC158 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0267 (Fisher's exact test), Q value = 0.17

Table S15384.  Gene #1455: 'CCDC158 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
CCDC158 MUTATED 3 1 0 4
CCDC158 WILD-TYPE 43 57 64 39

Figure S3938.  Get High-res Image Gene #1455: 'CCDC158 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'CCDC158 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.595 (Fisher's exact test), Q value = 0.9

Table S15385.  Gene #1455: 'CCDC158 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
CCDC158 MUTATED 3 3 2
CCDC158 WILD-TYPE 48 80 75
'CCDC158 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00065 (Fisher's exact test), Q value = 0.018

Table S15386.  Gene #1455: 'CCDC158 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
CCDC158 MUTATED 16 2 1 0
CCDC158 WILD-TYPE 162 181 100 20

Figure S3939.  Get High-res Image Gene #1455: 'CCDC158 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'CCDC158 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.024 (Fisher's exact test), Q value = 0.16

Table S15387.  Gene #1455: 'CCDC158 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
CCDC158 MUTATED 7 0 4
CCDC158 WILD-TYPE 80 80 96

Figure S3940.  Get High-res Image Gene #1455: 'CCDC158 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'CCDC158 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.436 (Fisher's exact test), Q value = 0.76

Table S15388.  Gene #1455: 'CCDC158 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
CCDC158 MUTATED 2 6 8
CCDC158 WILD-TYPE 87 154 130
'CCDC158 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.748 (Fisher's exact test), Q value = 1

Table S15389.  Gene #1455: 'CCDC158 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
CCDC158 MUTATED 7 7 2
CCDC158 WILD-TYPE 175 126 70
'CCDC158 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0261 (Fisher's exact test), Q value = 0.16

Table S15390.  Gene #1455: 'CCDC158 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
CCDC158 MUTATED 0 6 3 10
CCDC158 WILD-TYPE 112 90 89 176

Figure S3941.  Get High-res Image Gene #1455: 'CCDC158 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'CCDC158 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.185 (Fisher's exact test), Q value = 0.49

Table S15391.  Gene #1455: 'CCDC158 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
CCDC158 MUTATED 1 2 5 0 2 3 6
CCDC158 WILD-TYPE 59 48 44 40 61 122 93
'CCDC158 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.17 (Fisher's exact test), Q value = 0.47

Table S15392.  Gene #1455: 'CCDC158 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
CCDC158 MUTATED 4 4 0 11
CCDC158 WILD-TYPE 126 74 68 185
'CCDC158 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.104 (Fisher's exact test), Q value = 0.36

Table S15393.  Gene #1455: 'CCDC158 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
CCDC158 MUTATED 1 4 2 3 7 0 0 0 2
CCDC158 WILD-TYPE 39 58 26 77 62 48 43 28 72
'CCDC158 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.359 (Fisher's exact test), Q value = 0.69

Table S15394.  Gene #1455: 'CCDC158 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
CCDC158 MUTATED 1 1 0 2
CCDC158 WILD-TYPE 32 30 27 17
'CCDC158 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.869 (Fisher's exact test), Q value = 1

Table S15395.  Gene #1455: 'CCDC158 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
CCDC158 MUTATED 3 0 1 0
CCDC158 WILD-TYPE 51 10 23 22
'BRD2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0727 (Fisher's exact test), Q value = 0.29

Table S15396.  Gene #1456: 'BRD2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
BRD2 MUTATED 2 0 0 2
BRD2 WILD-TYPE 44 58 64 41
'BRD2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.555 (Fisher's exact test), Q value = 0.87

Table S15397.  Gene #1456: 'BRD2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
BRD2 MUTATED 2 1 1
BRD2 WILD-TYPE 49 82 76
'BRD2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00197 (Fisher's exact test), Q value = 0.037

Table S15398.  Gene #1456: 'BRD2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
BRD2 MUTATED 11 1 0 0
BRD2 WILD-TYPE 167 182 101 20

Figure S3942.  Get High-res Image Gene #1456: 'BRD2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'BRD2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.179 (Fisher's exact test), Q value = 0.48

Table S15399.  Gene #1456: 'BRD2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
BRD2 MUTATED 1 2 6
BRD2 WILD-TYPE 86 78 94
'BRD2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.19 (Fisher's exact test), Q value = 0.49

Table S15400.  Gene #1456: 'BRD2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
BRD2 MUTATED 0 6 4
BRD2 WILD-TYPE 89 154 134
'BRD2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.3 (Fisher's exact test), Q value = 0.63

Table S15401.  Gene #1456: 'BRD2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
BRD2 MUTATED 3 6 1
BRD2 WILD-TYPE 179 127 71
'BRD2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.359 (Fisher's exact test), Q value = 0.69

Table S15402.  Gene #1456: 'BRD2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
BRD2 MUTATED 2 5 1 4
BRD2 WILD-TYPE 110 91 91 182
'BRD2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.2 (Fisher's exact test), Q value = 0.51

Table S15403.  Gene #1456: 'BRD2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
BRD2 MUTATED 1 3 3 0 1 1 3
BRD2 WILD-TYPE 59 47 46 40 62 124 96
'BRD2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.639 (Fisher's exact test), Q value = 0.93

Table S15404.  Gene #1456: 'BRD2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
BRD2 MUTATED 2 1 2 7
BRD2 WILD-TYPE 128 77 66 189
'BRD2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0436 (Fisher's exact test), Q value = 0.22

Table S15405.  Gene #1456: 'BRD2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
BRD2 MUTATED 0 0 1 3 6 1 1 0 0
BRD2 WILD-TYPE 40 62 27 77 63 47 42 28 74

Figure S3943.  Get High-res Image Gene #1456: 'BRD2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'KIAA2022 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.223 (Fisher's exact test), Q value = 0.54

Table S15406.  Gene #1457: 'KIAA2022 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
KIAA2022 MUTATED 4 2 2 5
KIAA2022 WILD-TYPE 42 56 62 38
'KIAA2022 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.217 (Fisher's exact test), Q value = 0.53

Table S15407.  Gene #1457: 'KIAA2022 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
KIAA2022 MUTATED 5 6 2
KIAA2022 WILD-TYPE 46 77 75
'KIAA2022 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.969 (Fisher's exact test), Q value = 1

Table S15408.  Gene #1457: 'KIAA2022 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
KIAA2022 MUTATED 16 14 8 1
KIAA2022 WILD-TYPE 162 169 93 19
'KIAA2022 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.965 (Fisher's exact test), Q value = 1

Table S15409.  Gene #1457: 'KIAA2022 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
KIAA2022 MUTATED 8 7 10
KIAA2022 WILD-TYPE 79 73 90
'KIAA2022 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.52 (Fisher's exact test), Q value = 0.84

Table S15410.  Gene #1457: 'KIAA2022 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
KIAA2022 MUTATED 5 10 13
KIAA2022 WILD-TYPE 84 150 125
'KIAA2022 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.262 (Fisher's exact test), Q value = 0.59

Table S15411.  Gene #1457: 'KIAA2022 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
KIAA2022 MUTATED 15 11 2
KIAA2022 WILD-TYPE 167 122 70
'KIAA2022 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.163 (Fisher's exact test), Q value = 0.46

Table S15412.  Gene #1457: 'KIAA2022 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
KIAA2022 MUTATED 13 5 10 11
KIAA2022 WILD-TYPE 99 91 82 175
'KIAA2022 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.485 (Fisher's exact test), Q value = 0.81

Table S15413.  Gene #1457: 'KIAA2022 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
KIAA2022 MUTATED 6 6 5 3 5 5 9
KIAA2022 WILD-TYPE 54 44 44 37 58 120 90
'KIAA2022 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.265 (Fisher's exact test), Q value = 0.59

Table S15414.  Gene #1457: 'KIAA2022 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
KIAA2022 MUTATED 14 6 6 10
KIAA2022 WILD-TYPE 116 72 62 186
'KIAA2022 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.351 (Fisher's exact test), Q value = 0.68

Table S15415.  Gene #1457: 'KIAA2022 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
KIAA2022 MUTATED 2 7 5 5 7 2 4 1 3
KIAA2022 WILD-TYPE 38 55 23 75 62 46 39 27 71
'KIAA2022 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.109 (Fisher's exact test), Q value = 0.37

Table S15416.  Gene #1457: 'KIAA2022 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
KIAA2022 MUTATED 5 2 0 3
KIAA2022 WILD-TYPE 28 29 27 16
'KIAA2022 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.149 (Fisher's exact test), Q value = 0.43

Table S15417.  Gene #1457: 'KIAA2022 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
KIAA2022 MUTATED 8 1 0 1
KIAA2022 WILD-TYPE 46 9 24 21
'GRM1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0582 (Fisher's exact test), Q value = 0.26

Table S15418.  Gene #1458: 'GRM1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
GRM1 MUTATED 5 0 3 2
GRM1 WILD-TYPE 41 58 61 41
'GRM1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0244 (Fisher's exact test), Q value = 0.16

Table S15419.  Gene #1458: 'GRM1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
GRM1 MUTATED 6 1 3
GRM1 WILD-TYPE 45 82 74

Figure S3944.  Get High-res Image Gene #1458: 'GRM1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'GRM1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00063 (Fisher's exact test), Q value = 0.018

Table S15420.  Gene #1458: 'GRM1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
GRM1 MUTATED 21 5 3 3
GRM1 WILD-TYPE 157 178 98 17

Figure S3945.  Get High-res Image Gene #1458: 'GRM1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'GRM1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.267 (Fisher's exact test), Q value = 0.59

Table S15421.  Gene #1458: 'GRM1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
GRM1 MUTATED 9 3 8
GRM1 WILD-TYPE 78 77 92
'GRM1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0948 (Fisher's exact test), Q value = 0.34

Table S15422.  Gene #1458: 'GRM1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
GRM1 MUTATED 8 6 13
GRM1 WILD-TYPE 81 154 125
'GRM1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.404 (Fisher's exact test), Q value = 0.73

Table S15423.  Gene #1458: 'GRM1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
GRM1 MUTATED 16 8 3
GRM1 WILD-TYPE 166 125 69
'GRM1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.052 (Fisher's exact test), Q value = 0.25

Table S15424.  Gene #1458: 'GRM1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
GRM1 MUTATED 4 5 12 10
GRM1 WILD-TYPE 108 91 80 176
'GRM1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0466 (Fisher's exact test), Q value = 0.23

Table S15425.  Gene #1458: 'GRM1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
GRM1 MUTATED 3 4 8 1 4 3 8
GRM1 WILD-TYPE 57 46 41 39 59 122 91

Figure S3946.  Get High-res Image Gene #1458: 'GRM1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'GRM1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.253 (Fisher's exact test), Q value = 0.58

Table S15426.  Gene #1458: 'GRM1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
GRM1 MUTATED 11 5 1 14
GRM1 WILD-TYPE 119 73 67 182
'GRM1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0359 (Fisher's exact test), Q value = 0.2

Table S15427.  Gene #1458: 'GRM1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
GRM1 MUTATED 6 4 1 3 9 3 1 3 1
GRM1 WILD-TYPE 34 58 27 77 60 45 42 25 73

Figure S3947.  Get High-res Image Gene #1458: 'GRM1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'GRM1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0706 (Fisher's exact test), Q value = 0.29

Table S15428.  Gene #1458: 'GRM1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
GRM1 MUTATED 5 0 1 2
GRM1 WILD-TYPE 28 31 26 17
'GRM1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.657 (Fisher's exact test), Q value = 0.94

Table S15429.  Gene #1458: 'GRM1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
GRM1 MUTATED 6 0 1 1
GRM1 WILD-TYPE 48 10 23 21
'WFDC10B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.491 (Fisher's exact test), Q value = 0.82

Table S15430.  Gene #1459: 'WFDC10B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
WFDC10B MUTATED 2 1 2 0
WFDC10B WILD-TYPE 176 182 99 20
'WFDC10B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.866 (Fisher's exact test), Q value = 1

Table S15431.  Gene #1459: 'WFDC10B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
WFDC10B MUTATED 1 2 2
WFDC10B WILD-TYPE 86 78 98
'WFDC10B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.73 (Fisher's exact test), Q value = 1

Table S15432.  Gene #1459: 'WFDC10B MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
WFDC10B MUTATED 2 2 1
WFDC10B WILD-TYPE 87 158 137
'WFDC10B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.421 (Fisher's exact test), Q value = 0.75

Table S15433.  Gene #1459: 'WFDC10B MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
WFDC10B MUTATED 2 1 2
WFDC10B WILD-TYPE 180 132 70
'WFDC10B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0308 (Fisher's exact test), Q value = 0.18

Table S15434.  Gene #1459: 'WFDC10B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
WFDC10B MUTATED 2 3 0 0
WFDC10B WILD-TYPE 110 93 92 186

Figure S3948.  Get High-res Image Gene #1459: 'WFDC10B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'WFDC10B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0298 (Fisher's exact test), Q value = 0.18

Table S15435.  Gene #1459: 'WFDC10B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
WFDC10B MUTATED 0 1 2 0 2 0 0
WFDC10B WILD-TYPE 60 49 47 40 61 125 99

Figure S3949.  Get High-res Image Gene #1459: 'WFDC10B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'WFDC10B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.632 (Fisher's exact test), Q value = 0.93

Table S15436.  Gene #1459: 'WFDC10B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
WFDC10B MUTATED 2 1 1 1
WFDC10B WILD-TYPE 128 77 67 195
'WFDC10B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.162 (Fisher's exact test), Q value = 0.46

Table S15437.  Gene #1459: 'WFDC10B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
WFDC10B MUTATED 0 1 1 0 1 0 2 0 0
WFDC10B WILD-TYPE 40 61 27 80 68 48 41 28 74
'KIAA0240 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00537 (Fisher's exact test), Q value = 0.066

Table S15438.  Gene #1460: 'KIAA0240 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
KIAA0240 MUTATED 2 0 0 4
KIAA0240 WILD-TYPE 44 58 64 39

Figure S3950.  Get High-res Image Gene #1460: 'KIAA0240 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'KIAA0240 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00138 (Fisher's exact test), Q value = 0.03

Table S15439.  Gene #1460: 'KIAA0240 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
KIAA0240 MUTATED 5 0 1
KIAA0240 WILD-TYPE 46 83 76

Figure S3951.  Get High-res Image Gene #1460: 'KIAA0240 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'KIAA0240 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00176 (Fisher's exact test), Q value = 0.035

Table S15440.  Gene #1460: 'KIAA0240 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
KIAA0240 MUTATED 10 0 1 0
KIAA0240 WILD-TYPE 168 183 100 20

Figure S3952.  Get High-res Image Gene #1460: 'KIAA0240 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'KIAA0240 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.383 (Fisher's exact test), Q value = 0.71

Table S15441.  Gene #1460: 'KIAA0240 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
KIAA0240 MUTATED 2 0 3
KIAA0240 WILD-TYPE 85 80 97
'KIAA0240 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.384 (Fisher's exact test), Q value = 0.71

Table S15442.  Gene #1460: 'KIAA0240 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
KIAA0240 MUTATED 1 2 5
KIAA0240 WILD-TYPE 88 158 133
'KIAA0240 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S15443.  Gene #1460: 'KIAA0240 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
KIAA0240 MUTATED 4 3 1
KIAA0240 WILD-TYPE 178 130 71
'KIAA0240 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.177 (Fisher's exact test), Q value = 0.48

Table S15444.  Gene #1460: 'KIAA0240 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
KIAA0240 MUTATED 0 2 2 7
KIAA0240 WILD-TYPE 112 94 90 179
'KIAA0240 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.008 (Fisher's exact test), Q value = 0.084

Table S15445.  Gene #1460: 'KIAA0240 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
KIAA0240 MUTATED 1 0 3 1 0 0 6
KIAA0240 WILD-TYPE 59 50 46 39 63 125 93

Figure S3953.  Get High-res Image Gene #1460: 'KIAA0240 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'KIAA0240 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.968 (Fisher's exact test), Q value = 1

Table S15446.  Gene #1460: 'KIAA0240 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
KIAA0240 MUTATED 3 1 1 5
KIAA0240 WILD-TYPE 127 77 67 191
'KIAA0240 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.518 (Fisher's exact test), Q value = 0.84

Table S15447.  Gene #1460: 'KIAA0240 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
KIAA0240 MUTATED 1 1 1 0 3 0 1 1 2
KIAA0240 WILD-TYPE 39 61 27 80 66 48 42 27 72
'PSMB8 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.195 (Fisher's exact test), Q value = 0.5

Table S15448.  Gene #1461: 'PSMB8 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
PSMB8 MUTATED 0 0 1 2
PSMB8 WILD-TYPE 46 58 63 41
'PSMB8 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0608 (Fisher's exact test), Q value = 0.27

Table S15449.  Gene #1461: 'PSMB8 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
PSMB8 MUTATED 0 0 3
PSMB8 WILD-TYPE 51 83 74
'PSMB8 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.105 (Fisher's exact test), Q value = 0.36

Table S15450.  Gene #1461: 'PSMB8 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
PSMB8 MUTATED 6 1 0 0
PSMB8 WILD-TYPE 172 182 101 20
'PSMB8 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.388 (Fisher's exact test), Q value = 0.72

Table S15451.  Gene #1461: 'PSMB8 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
PSMB8 MUTATED 1 0 3
PSMB8 WILD-TYPE 86 80 97
'PSMB8 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.383 (Fisher's exact test), Q value = 0.71

Table S15452.  Gene #1461: 'PSMB8 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
PSMB8 MUTATED 0 4 2
PSMB8 WILD-TYPE 89 156 136
'PSMB8 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.289 (Fisher's exact test), Q value = 0.62

Table S15453.  Gene #1461: 'PSMB8 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
PSMB8 MUTATED 2 4 0
PSMB8 WILD-TYPE 180 129 72
'PSMB8 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0506 (Fisher's exact test), Q value = 0.24

Table S15454.  Gene #1461: 'PSMB8 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
PSMB8 MUTATED 0 4 0 3
PSMB8 WILD-TYPE 112 92 92 183
'PSMB8 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0272 (Fisher's exact test), Q value = 0.17

Table S15455.  Gene #1461: 'PSMB8 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
PSMB8 MUTATED 0 1 3 0 0 0 3
PSMB8 WILD-TYPE 60 49 46 40 63 125 96

Figure S3954.  Get High-res Image Gene #1461: 'PSMB8 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'PSMB8 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.827 (Fisher's exact test), Q value = 1

Table S15456.  Gene #1461: 'PSMB8 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
PSMB8 MUTATED 3 1 0 3
PSMB8 WILD-TYPE 127 77 68 193
'PSMB8 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.382 (Fisher's exact test), Q value = 0.71

Table S15457.  Gene #1461: 'PSMB8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
PSMB8 MUTATED 0 1 1 0 2 0 0 0 3
PSMB8 WILD-TYPE 40 61 27 80 67 48 43 28 71
'BTF3L4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.141 (Fisher's exact test), Q value = 0.42

Table S15458.  Gene #1462: 'BTF3L4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
BTF3L4 MUTATED 3 1 0 1
BTF3L4 WILD-TYPE 175 182 101 19
'BTF3L4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.527 (Fisher's exact test), Q value = 0.85

Table S15459.  Gene #1462: 'BTF3L4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
BTF3L4 MUTATED 3 1 1
BTF3L4 WILD-TYPE 84 79 99
'BTF3L4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.359 (Fisher's exact test), Q value = 0.69

Table S15460.  Gene #1462: 'BTF3L4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
BTF3L4 MUTATED 0 1 3
BTF3L4 WILD-TYPE 89 159 135
'BTF3L4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.672 (Fisher's exact test), Q value = 0.95

Table S15461.  Gene #1462: 'BTF3L4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
BTF3L4 MUTATED 3 1 0
BTF3L4 WILD-TYPE 179 132 72
'BTF3L4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0844 (Fisher's exact test), Q value = 0.31

Table S15462.  Gene #1462: 'BTF3L4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
BTF3L4 MUTATED 1 2 2 0
BTF3L4 WILD-TYPE 111 94 90 186
'BTF3L4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00539 (Fisher's exact test), Q value = 0.066

Table S15463.  Gene #1462: 'BTF3L4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
BTF3L4 MUTATED 1 0 3 1 0 0 0
BTF3L4 WILD-TYPE 59 50 46 39 63 125 99

Figure S3955.  Get High-res Image Gene #1462: 'BTF3L4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'BTF3L4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.104 (Fisher's exact test), Q value = 0.36

Table S15464.  Gene #1462: 'BTF3L4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
BTF3L4 MUTATED 3 1 1 0
BTF3L4 WILD-TYPE 127 77 67 196
'BTF3L4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.877 (Fisher's exact test), Q value = 1

Table S15465.  Gene #1462: 'BTF3L4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
BTF3L4 MUTATED 1 1 0 1 1 0 1 0 0
BTF3L4 WILD-TYPE 39 61 28 79 68 48 42 28 74
'SYNGR4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.442 (Fisher's exact test), Q value = 0.77

Table S15466.  Gene #1463: 'SYNGR4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
SYNGR4 MUTATED 4 2 0 0
SYNGR4 WILD-TYPE 174 181 101 20
'SYNGR4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.555 (Fisher's exact test), Q value = 0.87

Table S15467.  Gene #1463: 'SYNGR4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
SYNGR4 MUTATED 2 0 2
SYNGR4 WILD-TYPE 85 80 98
'SYNGR4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0778 (Fisher's exact test), Q value = 0.3

Table S15468.  Gene #1463: 'SYNGR4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
SYNGR4 MUTATED 0 1 5
SYNGR4 WILD-TYPE 89 159 133
'SYNGR4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.76 (Fisher's exact test), Q value = 1

Table S15469.  Gene #1463: 'SYNGR4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
SYNGR4 MUTATED 4 1 1
SYNGR4 WILD-TYPE 178 132 71
'SYNGR4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.349 (Fisher's exact test), Q value = 0.68

Table S15470.  Gene #1463: 'SYNGR4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
SYNGR4 MUTATED 0 2 2 2
SYNGR4 WILD-TYPE 112 94 90 184
'SYNGR4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.2 (Fisher's exact test), Q value = 0.5

Table S15471.  Gene #1463: 'SYNGR4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
SYNGR4 MUTATED 0 2 2 0 0 1 1
SYNGR4 WILD-TYPE 60 48 47 40 63 124 98
'SYNGR4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.545 (Fisher's exact test), Q value = 0.86

Table S15472.  Gene #1463: 'SYNGR4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
SYNGR4 MUTATED 1 2 0 2
SYNGR4 WILD-TYPE 129 76 68 194
'SYNGR4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.104 (Fisher's exact test), Q value = 0.36

Table S15473.  Gene #1463: 'SYNGR4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
SYNGR4 MUTATED 0 3 0 0 0 0 0 1 1
SYNGR4 WILD-TYPE 40 59 28 80 69 48 43 27 73
'OR2AE1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.665 (Fisher's exact test), Q value = 0.95

Table S15474.  Gene #1464: 'OR2AE1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
OR2AE1 MUTATED 2 1 0 0
OR2AE1 WILD-TYPE 176 182 101 20
'OR2AE1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.452 (Fisher's exact test), Q value = 0.78

Table S15475.  Gene #1464: 'OR2AE1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
OR2AE1 MUTATED 1 2 0
OR2AE1 WILD-TYPE 88 158 138
'OR2AE1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.768 (Fisher's exact test), Q value = 1

Table S15476.  Gene #1464: 'OR2AE1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
OR2AE1 MUTATED 1 1 1
OR2AE1 WILD-TYPE 181 132 71
'OR2AE1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.693 (Fisher's exact test), Q value = 0.97

Table S15477.  Gene #1464: 'OR2AE1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
OR2AE1 MUTATED 0 1 0 2
OR2AE1 WILD-TYPE 112 95 92 184
'OR2AE1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.56 (Fisher's exact test), Q value = 0.87

Table S15478.  Gene #1464: 'OR2AE1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
OR2AE1 MUTATED 1 0 1 0 0 1 0
OR2AE1 WILD-TYPE 59 50 48 40 63 124 99
'OR2AE1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.743 (Fisher's exact test), Q value = 1

Table S15479.  Gene #1464: 'OR2AE1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
OR2AE1 MUTATED 1 0 1 1
OR2AE1 WILD-TYPE 129 78 67 195
'OR2AE1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.718 (Fisher's exact test), Q value = 0.99

Table S15480.  Gene #1464: 'OR2AE1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
OR2AE1 MUTATED 1 0 0 0 1 0 0 0 1
OR2AE1 WILD-TYPE 39 62 28 80 68 48 43 28 73
'SMAP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.277 (Fisher's exact test), Q value = 0.6

Table S15481.  Gene #1465: 'SMAP1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
SMAP1 MUTATED 3 0 0 0
SMAP1 WILD-TYPE 175 183 101 20
'SMAP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.693 (Fisher's exact test), Q value = 0.97

Table S15482.  Gene #1465: 'SMAP1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
SMAP1 MUTATED 0 1 0 2
SMAP1 WILD-TYPE 112 95 92 184
'SMAP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.399 (Fisher's exact test), Q value = 0.72

Table S15483.  Gene #1465: 'SMAP1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
SMAP1 MUTATED 1 0 1 0 0 0 1
SMAP1 WILD-TYPE 59 50 48 40 63 125 98
'SMAP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S15484.  Gene #1465: 'SMAP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
SMAP1 MUTATED 1 0 0 2
SMAP1 WILD-TYPE 129 78 68 194
'SMAP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0663 (Fisher's exact test), Q value = 0.28

Table S15485.  Gene #1465: 'SMAP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
SMAP1 MUTATED 0 0 0 0 3 0 0 0 0
SMAP1 WILD-TYPE 40 62 28 80 66 48 43 28 74
'GON4L MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00497 (Fisher's exact test), Q value = 0.064

Table S15486.  Gene #1466: 'GON4L MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
GON4L MUTATED 4 0 0 3
GON4L WILD-TYPE 42 58 64 40

Figure S3956.  Get High-res Image Gene #1466: 'GON4L MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'GON4L MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.125 (Fisher's exact test), Q value = 0.39

Table S15487.  Gene #1466: 'GON4L MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
GON4L MUTATED 4 2 1
GON4L WILD-TYPE 47 81 76
'GON4L MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00011 (Fisher's exact test), Q value = 0.0056

Table S15488.  Gene #1466: 'GON4L MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
GON4L MUTATED 19 2 2 0
GON4L WILD-TYPE 159 181 99 20

Figure S3957.  Get High-res Image Gene #1466: 'GON4L MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'GON4L MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0226 (Fisher's exact test), Q value = 0.15

Table S15489.  Gene #1466: 'GON4L MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
GON4L MUTATED 5 1 11
GON4L WILD-TYPE 82 79 89

Figure S3958.  Get High-res Image Gene #1466: 'GON4L MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'GON4L MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.324 (Fisher's exact test), Q value = 0.65

Table S15490.  Gene #1466: 'GON4L MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
GON4L MUTATED 2 10 9
GON4L WILD-TYPE 87 150 129
'GON4L MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S15491.  Gene #1466: 'GON4L MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
GON4L MUTATED 10 7 4
GON4L WILD-TYPE 172 126 68
'GON4L MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00724 (Fisher's exact test), Q value = 0.079

Table S15492.  Gene #1466: 'GON4L MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
GON4L MUTATED 0 8 6 9
GON4L WILD-TYPE 112 88 86 177

Figure S3959.  Get High-res Image Gene #1466: 'GON4L MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'GON4L MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0139 (Fisher's exact test), Q value = 0.12

Table S15493.  Gene #1466: 'GON4L MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
GON4L MUTATED 2 4 7 0 2 2 6
GON4L WILD-TYPE 58 46 42 40 61 123 93

Figure S3960.  Get High-res Image Gene #1466: 'GON4L MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'GON4L MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.523 (Fisher's exact test), Q value = 0.84

Table S15494.  Gene #1466: 'GON4L MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
GON4L MUTATED 8 3 1 10
GON4L WILD-TYPE 122 75 67 186
'GON4L MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.403 (Fisher's exact test), Q value = 0.73

Table S15495.  Gene #1466: 'GON4L MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
GON4L MUTATED 1 2 2 7 5 0 2 1 2
GON4L WILD-TYPE 39 60 26 73 64 48 41 27 72
'GON4L MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00154 (Fisher's exact test), Q value = 0.032

Table S15496.  Gene #1466: 'GON4L MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
GON4L MUTATED 0 1 1 5
GON4L WILD-TYPE 33 30 26 14

Figure S3961.  Get High-res Image Gene #1466: 'GON4L MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'GON4L MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.024 (Fisher's exact test), Q value = 0.16

Table S15497.  Gene #1466: 'GON4L MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
GON4L MUTATED 2 0 5 0
GON4L WILD-TYPE 52 10 19 22

Figure S3962.  Get High-res Image Gene #1466: 'GON4L MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

'NDST3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.126 (Fisher's exact test), Q value = 0.39

Table S15498.  Gene #1467: 'NDST3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
NDST3 MUTATED 3 3 0 3
NDST3 WILD-TYPE 43 55 64 40
'NDST3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.176 (Fisher's exact test), Q value = 0.48

Table S15499.  Gene #1467: 'NDST3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
NDST3 MUTATED 4 4 1
NDST3 WILD-TYPE 47 79 76
'NDST3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0128 (Fisher's exact test), Q value = 0.11

Table S15500.  Gene #1467: 'NDST3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
NDST3 MUTATED 13 3 1 1
NDST3 WILD-TYPE 165 180 100 19

Figure S3963.  Get High-res Image Gene #1467: 'NDST3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'NDST3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.193 (Fisher's exact test), Q value = 0.5

Table S15501.  Gene #1467: 'NDST3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
NDST3 MUTATED 6 2 2
NDST3 WILD-TYPE 81 78 98
'NDST3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.559 (Fisher's exact test), Q value = 0.87

Table S15502.  Gene #1467: 'NDST3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
NDST3 MUTATED 5 5 5
NDST3 WILD-TYPE 84 155 133
'NDST3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.888 (Fisher's exact test), Q value = 1

Table S15503.  Gene #1467: 'NDST3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
NDST3 MUTATED 7 6 2
NDST3 WILD-TYPE 175 127 70
'NDST3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.634 (Fisher's exact test), Q value = 0.93

Table S15504.  Gene #1467: 'NDST3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
NDST3 MUTATED 3 2 4 9
NDST3 WILD-TYPE 109 94 88 177
'NDST3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.383 (Fisher's exact test), Q value = 0.71

Table S15505.  Gene #1467: 'NDST3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
NDST3 MUTATED 1 2 3 0 2 3 7
NDST3 WILD-TYPE 59 48 46 40 61 122 92
'NDST3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.5 (Fisher's exact test), Q value = 0.83

Table S15506.  Gene #1467: 'NDST3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
NDST3 MUTATED 3 3 1 10
NDST3 WILD-TYPE 127 75 67 186
'NDST3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.803 (Fisher's exact test), Q value = 1

Table S15507.  Gene #1467: 'NDST3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
NDST3 MUTATED 1 3 2 2 3 1 0 1 4
NDST3 WILD-TYPE 39 59 26 78 66 47 43 27 70
'NDST3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.135 (Fisher's exact test), Q value = 0.41

Table S15508.  Gene #1467: 'NDST3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
NDST3 MUTATED 1 0 0 2
NDST3 WILD-TYPE 32 31 27 17
'NDST3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.565 (Fisher's exact test), Q value = 0.87

Table S15509.  Gene #1467: 'NDST3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
NDST3 MUTATED 3 0 0 0
NDST3 WILD-TYPE 51 10 24 22
'MAGEA4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.199 (Fisher's exact test), Q value = 0.5

Table S15510.  Gene #1468: 'MAGEA4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
MAGEA4 MUTATED 4 1 1 1
MAGEA4 WILD-TYPE 174 182 100 19
'MAGEA4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.63 (Fisher's exact test), Q value = 0.93

Table S15511.  Gene #1468: 'MAGEA4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
MAGEA4 MUTATED 1 1 3
MAGEA4 WILD-TYPE 86 79 97
'MAGEA4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.896 (Fisher's exact test), Q value = 1

Table S15512.  Gene #1468: 'MAGEA4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
MAGEA4 MUTATED 2 3 2
MAGEA4 WILD-TYPE 87 157 136
'MAGEA4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S15513.  Gene #1468: 'MAGEA4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
MAGEA4 MUTATED 4 2 1
MAGEA4 WILD-TYPE 178 131 71
'MAGEA4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.436 (Fisher's exact test), Q value = 0.76

Table S15514.  Gene #1468: 'MAGEA4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
MAGEA4 MUTATED 1 2 2 1
MAGEA4 WILD-TYPE 111 94 90 185
'MAGEA4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0213 (Fisher's exact test), Q value = 0.15

Table S15515.  Gene #1468: 'MAGEA4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
MAGEA4 MUTATED 1 1 3 0 1 0 0
MAGEA4 WILD-TYPE 59 49 46 40 62 125 99

Figure S3964.  Get High-res Image Gene #1468: 'MAGEA4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'MAGEA4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.691 (Fisher's exact test), Q value = 0.97

Table S15516.  Gene #1468: 'MAGEA4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
MAGEA4 MUTATED 2 2 0 3
MAGEA4 WILD-TYPE 128 76 68 193
'MAGEA4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.52 (Fisher's exact test), Q value = 0.84

Table S15517.  Gene #1468: 'MAGEA4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
MAGEA4 MUTATED 0 2 0 1 3 1 0 0 0
MAGEA4 WILD-TYPE 40 60 28 79 66 47 43 28 74
'MAGEA4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0857 (Fisher's exact test), Q value = 0.32

Table S15518.  Gene #1468: 'MAGEA4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
MAGEA4 MUTATED 0 1 0 2
MAGEA4 WILD-TYPE 33 30 27 17
'MAGEA4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.314 (Fisher's exact test), Q value = 0.64

Table S15519.  Gene #1468: 'MAGEA4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
MAGEA4 MUTATED 1 1 1 0
MAGEA4 WILD-TYPE 53 9 23 22
'RPS6KA5 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0221 (Fisher's exact test), Q value = 0.15

Table S15520.  Gene #1469: 'RPS6KA5 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
RPS6KA5 MUTATED 2 0 0 3
RPS6KA5 WILD-TYPE 44 58 64 40

Figure S3965.  Get High-res Image Gene #1469: 'RPS6KA5 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'RPS6KA5 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00635 (Fisher's exact test), Q value = 0.073

Table S15521.  Gene #1469: 'RPS6KA5 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
RPS6KA5 MUTATED 4 0 1
RPS6KA5 WILD-TYPE 47 83 76

Figure S3966.  Get High-res Image Gene #1469: 'RPS6KA5 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'RPS6KA5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.03 (Fisher's exact test), Q value = 0.18

Table S15522.  Gene #1469: 'RPS6KA5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
RPS6KA5 MUTATED 9 2 0 0
RPS6KA5 WILD-TYPE 169 181 101 20

Figure S3967.  Get High-res Image Gene #1469: 'RPS6KA5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'RPS6KA5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.289 (Fisher's exact test), Q value = 0.62

Table S15523.  Gene #1469: 'RPS6KA5 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
RPS6KA5 MUTATED 3 0 3
RPS6KA5 WILD-TYPE 84 80 97
'RPS6KA5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.39 (Fisher's exact test), Q value = 0.72

Table S15524.  Gene #1469: 'RPS6KA5 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
RPS6KA5 MUTATED 1 4 6
RPS6KA5 WILD-TYPE 88 156 132
'RPS6KA5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.425 (Fisher's exact test), Q value = 0.75

Table S15525.  Gene #1469: 'RPS6KA5 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
RPS6KA5 MUTATED 4 6 1
RPS6KA5 WILD-TYPE 178 127 71
'RPS6KA5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0557 (Fisher's exact test), Q value = 0.26

Table S15526.  Gene #1469: 'RPS6KA5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
RPS6KA5 MUTATED 0 5 1 5
RPS6KA5 WILD-TYPE 112 91 91 181
'RPS6KA5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0702 (Fisher's exact test), Q value = 0.29

Table S15527.  Gene #1469: 'RPS6KA5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
RPS6KA5 MUTATED 1 3 2 0 1 0 4
RPS6KA5 WILD-TYPE 59 47 47 40 62 125 95
'RPS6KA5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S15528.  Gene #1469: 'RPS6KA5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
RPS6KA5 MUTATED 3 1 1 4
RPS6KA5 WILD-TYPE 127 77 67 192
'RPS6KA5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.061 (Fisher's exact test), Q value = 0.27

Table S15529.  Gene #1469: 'RPS6KA5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
RPS6KA5 MUTATED 0 1 0 0 5 0 2 0 1
RPS6KA5 WILD-TYPE 40 61 28 80 64 48 41 28 73
'KLHL34 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.357 (Fisher's exact test), Q value = 0.69

Table S15530.  Gene #1470: 'KLHL34 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
KLHL34 MUTATED 8 3 2 0
KLHL34 WILD-TYPE 170 180 99 20
'KLHL34 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.13 (Fisher's exact test), Q value = 0.4

Table S15531.  Gene #1470: 'KLHL34 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
KLHL34 MUTATED 2 2 8
KLHL34 WILD-TYPE 85 78 92
'KLHL34 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.115 (Fisher's exact test), Q value = 0.38

Table S15532.  Gene #1470: 'KLHL34 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
KLHL34 MUTATED 0 4 6
KLHL34 WILD-TYPE 89 156 132
'KLHL34 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.916 (Fisher's exact test), Q value = 1

Table S15533.  Gene #1470: 'KLHL34 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
KLHL34 MUTATED 5 4 1
KLHL34 WILD-TYPE 177 129 71
'KLHL34 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00299 (Fisher's exact test), Q value = 0.049

Table S15534.  Gene #1470: 'KLHL34 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
KLHL34 MUTATED 2 8 2 1
KLHL34 WILD-TYPE 110 88 90 185

Figure S3968.  Get High-res Image Gene #1470: 'KLHL34 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'KLHL34 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S15535.  Gene #1470: 'KLHL34 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
KLHL34 MUTATED 1 0 10 0 1 1 0
KLHL34 WILD-TYPE 59 50 39 40 62 124 99

Figure S3969.  Get High-res Image Gene #1470: 'KLHL34 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'KLHL34 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 3e-04 (Fisher's exact test), Q value = 0.011

Table S15536.  Gene #1470: 'KLHL34 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
KLHL34 MUTATED 11 0 0 2
KLHL34 WILD-TYPE 119 78 68 194

Figure S3970.  Get High-res Image Gene #1470: 'KLHL34 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'KLHL34 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.123 (Fisher's exact test), Q value = 0.39

Table S15537.  Gene #1470: 'KLHL34 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
KLHL34 MUTATED 1 2 0 1 6 2 1 0 0
KLHL34 WILD-TYPE 39 60 28 79 63 46 42 28 74
'KLHL34 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00457 (Fisher's exact test), Q value = 0.061

Table S15538.  Gene #1470: 'KLHL34 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
KLHL34 MUTATED 0 0 0 3
KLHL34 WILD-TYPE 33 31 27 16

Figure S3971.  Get High-res Image Gene #1470: 'KLHL34 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'KLHL34 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.141 (Fisher's exact test), Q value = 0.42

Table S15539.  Gene #1470: 'KLHL34 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
KLHL34 MUTATED 0 0 2 1
KLHL34 WILD-TYPE 54 10 22 21
'EIF2AK3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.079 (Fisher's exact test), Q value = 0.3

Table S15540.  Gene #1471: 'EIF2AK3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
EIF2AK3 MUTATED 8 1 3 0
EIF2AK3 WILD-TYPE 170 182 98 20
'EIF2AK3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.192 (Fisher's exact test), Q value = 0.5

Table S15541.  Gene #1471: 'EIF2AK3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
EIF2AK3 MUTATED 6 2 2
EIF2AK3 WILD-TYPE 81 78 98
'EIF2AK3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.266 (Fisher's exact test), Q value = 0.59

Table S15542.  Gene #1471: 'EIF2AK3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
EIF2AK3 MUTATED 2 2 6
EIF2AK3 WILD-TYPE 87 158 132
'EIF2AK3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.439 (Fisher's exact test), Q value = 0.77

Table S15543.  Gene #1471: 'EIF2AK3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
EIF2AK3 MUTATED 7 2 1
EIF2AK3 WILD-TYPE 175 131 71
'EIF2AK3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0714 (Fisher's exact test), Q value = 0.29

Table S15544.  Gene #1471: 'EIF2AK3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
EIF2AK3 MUTATED 1 2 6 3
EIF2AK3 WILD-TYPE 111 94 86 183
'EIF2AK3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.15 (Fisher's exact test), Q value = 0.43

Table S15545.  Gene #1471: 'EIF2AK3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
EIF2AK3 MUTATED 2 2 3 0 3 1 1
EIF2AK3 WILD-TYPE 58 48 46 40 60 124 98
'EIF2AK3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0644 (Fisher's exact test), Q value = 0.28

Table S15546.  Gene #1471: 'EIF2AK3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
EIF2AK3 MUTATED 4 5 0 3
EIF2AK3 WILD-TYPE 126 73 68 193
'EIF2AK3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.245 (Fisher's exact test), Q value = 0.57

Table S15547.  Gene #1471: 'EIF2AK3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
EIF2AK3 MUTATED 1 5 0 2 3 0 0 0 1
EIF2AK3 WILD-TYPE 39 57 28 78 66 48 43 28 73
'EIF2AK3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.697 (Fisher's exact test), Q value = 0.97

Table S15548.  Gene #1471: 'EIF2AK3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
EIF2AK3 MUTATED 2 1 0 1
EIF2AK3 WILD-TYPE 31 30 27 18
'EIF2AK3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.43 (Fisher's exact test), Q value = 0.76

Table S15549.  Gene #1471: 'EIF2AK3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
EIF2AK3 MUTATED 4 0 0 0
EIF2AK3 WILD-TYPE 50 10 24 22
'CDC73 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0263 (Fisher's exact test), Q value = 0.16

Table S15550.  Gene #1472: 'CDC73 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
CDC73 MUTATED 3 1 0 4
CDC73 WILD-TYPE 43 57 64 39

Figure S3972.  Get High-res Image Gene #1472: 'CDC73 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'CDC73 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0488 (Fisher's exact test), Q value = 0.24

Table S15551.  Gene #1472: 'CDC73 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
CDC73 MUTATED 5 1 2
CDC73 WILD-TYPE 46 82 75

Figure S3973.  Get High-res Image Gene #1472: 'CDC73 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'CDC73 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.808 (Fisher's exact test), Q value = 1

Table S15552.  Gene #1472: 'CDC73 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
CDC73 MUTATED 9 9 3 0
CDC73 WILD-TYPE 169 174 98 20
'CDC73 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.376 (Fisher's exact test), Q value = 0.71

Table S15553.  Gene #1472: 'CDC73 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
CDC73 MUTATED 6 2 7
CDC73 WILD-TYPE 81 78 93
'CDC73 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0276 (Fisher's exact test), Q value = 0.17

Table S15554.  Gene #1472: 'CDC73 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
CDC73 MUTATED 1 6 12
CDC73 WILD-TYPE 88 154 126

Figure S3974.  Get High-res Image Gene #1472: 'CDC73 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'CDC73 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.952 (Fisher's exact test), Q value = 1

Table S15555.  Gene #1472: 'CDC73 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
CDC73 MUTATED 10 6 3
CDC73 WILD-TYPE 172 127 69
'CDC73 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.165 (Fisher's exact test), Q value = 0.46

Table S15556.  Gene #1472: 'CDC73 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
CDC73 MUTATED 2 8 4 8
CDC73 WILD-TYPE 110 88 88 178
'CDC73 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0544 (Fisher's exact test), Q value = 0.25

Table S15557.  Gene #1472: 'CDC73 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
CDC73 MUTATED 2 6 3 1 1 2 7
CDC73 WILD-TYPE 58 44 46 39 62 123 92
'CDC73 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.531 (Fisher's exact test), Q value = 0.85

Table S15558.  Gene #1472: 'CDC73 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
CDC73 MUTATED 8 3 1 8
CDC73 WILD-TYPE 122 75 67 188
'CDC73 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.652 (Fisher's exact test), Q value = 0.94

Table S15559.  Gene #1472: 'CDC73 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
CDC73 MUTATED 1 3 3 4 4 1 2 1 1
CDC73 WILD-TYPE 39 59 25 76 65 47 41 27 73
'CDC73 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.93 (Fisher's exact test), Q value = 1

Table S15560.  Gene #1472: 'CDC73 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
CDC73 MUTATED 1 2 1 1
CDC73 WILD-TYPE 32 29 26 18
'CDC73 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.382 (Fisher's exact test), Q value = 0.71

Table S15561.  Gene #1472: 'CDC73 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
CDC73 MUTATED 2 1 2 0
CDC73 WILD-TYPE 52 9 22 22
'MYH15 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0316 (Fisher's exact test), Q value = 0.18

Table S15562.  Gene #1473: 'MYH15 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
MYH15 MUTATED 4 1 0 3
MYH15 WILD-TYPE 42 57 64 40

Figure S3975.  Get High-res Image Gene #1473: 'MYH15 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'MYH15 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.153 (Fisher's exact test), Q value = 0.44

Table S15563.  Gene #1473: 'MYH15 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
MYH15 MUTATED 4 3 1
MYH15 WILD-TYPE 47 80 76
'MYH15 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0017 (Fisher's exact test), Q value = 0.034

Table S15564.  Gene #1473: 'MYH15 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
MYH15 MUTATED 20 7 1 1
MYH15 WILD-TYPE 158 176 100 19

Figure S3976.  Get High-res Image Gene #1473: 'MYH15 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'MYH15 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.19 (Fisher's exact test), Q value = 0.49

Table S15565.  Gene #1473: 'MYH15 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
MYH15 MUTATED 10 3 8
MYH15 WILD-TYPE 77 77 92
'MYH15 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.48 (Fisher's exact test), Q value = 0.81

Table S15566.  Gene #1473: 'MYH15 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
MYH15 MUTATED 3 9 10
MYH15 WILD-TYPE 86 151 128
'MYH15 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.775 (Fisher's exact test), Q value = 1

Table S15567.  Gene #1473: 'MYH15 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
MYH15 MUTATED 9 9 4
MYH15 WILD-TYPE 173 124 68
'MYH15 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.276 (Fisher's exact test), Q value = 0.6

Table S15568.  Gene #1473: 'MYH15 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
MYH15 MUTATED 4 8 8 9
MYH15 WILD-TYPE 108 88 84 177
'MYH15 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0285 (Fisher's exact test), Q value = 0.17

Table S15569.  Gene #1473: 'MYH15 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
MYH15 MUTATED 3 5 7 1 5 2 6
MYH15 WILD-TYPE 57 45 42 39 58 123 93

Figure S3977.  Get High-res Image Gene #1473: 'MYH15 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'MYH15 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.587 (Fisher's exact test), Q value = 0.89

Table S15570.  Gene #1473: 'MYH15 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
MYH15 MUTATED 9 7 3 10
MYH15 WILD-TYPE 121 71 65 186
'MYH15 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.245 (Fisher's exact test), Q value = 0.57

Table S15571.  Gene #1473: 'MYH15 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
MYH15 MUTATED 2 7 1 7 7 1 2 0 2
MYH15 WILD-TYPE 38 55 27 73 62 47 41 28 72
'MYH15 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.747 (Fisher's exact test), Q value = 1

Table S15572.  Gene #1473: 'MYH15 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
MYH15 MUTATED 3 2 2 3
MYH15 WILD-TYPE 30 29 25 16
'MYH15 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.594 (Fisher's exact test), Q value = 0.9

Table S15573.  Gene #1473: 'MYH15 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
MYH15 MUTATED 6 0 1 3
MYH15 WILD-TYPE 48 10 23 19
'SPEN MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00779 (Fisher's exact test), Q value = 0.082

Table S15574.  Gene #1474: 'SPEN MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
SPEN MUTATED 7 1 1 4
SPEN WILD-TYPE 39 57 63 39

Figure S3978.  Get High-res Image Gene #1474: 'SPEN MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'SPEN MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00044 (Fisher's exact test), Q value = 0.014

Table S15575.  Gene #1474: 'SPEN MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
SPEN MUTATED 9 1 3
SPEN WILD-TYPE 42 82 74

Figure S3979.  Get High-res Image Gene #1474: 'SPEN MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'SPEN MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00015 (Fisher's exact test), Q value = 0.0069

Table S15576.  Gene #1474: 'SPEN MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
SPEN MUTATED 25 5 3 1
SPEN WILD-TYPE 153 178 98 19

Figure S3980.  Get High-res Image Gene #1474: 'SPEN MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'SPEN MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00202 (Fisher's exact test), Q value = 0.038

Table S15577.  Gene #1474: 'SPEN MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
SPEN MUTATED 4 2 16
SPEN WILD-TYPE 83 78 84

Figure S3981.  Get High-res Image Gene #1474: 'SPEN MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'SPEN MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0478 (Fisher's exact test), Q value = 0.23

Table S15578.  Gene #1474: 'SPEN MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
SPEN MUTATED 3 9 16
SPEN WILD-TYPE 86 151 122

Figure S3982.  Get High-res Image Gene #1474: 'SPEN MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'SPEN MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.788 (Fisher's exact test), Q value = 1

Table S15579.  Gene #1474: 'SPEN MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
SPEN MUTATED 15 9 4
SPEN WILD-TYPE 167 124 68
'SPEN MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0819 (Fisher's exact test), Q value = 0.31

Table S15580.  Gene #1474: 'SPEN MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
SPEN MUTATED 3 10 9 12
SPEN WILD-TYPE 109 86 83 174
'SPEN MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-04 (Fisher's exact test), Q value = 0.0052

Table S15581.  Gene #1474: 'SPEN MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
SPEN MUTATED 2 4 11 1 3 2 11
SPEN WILD-TYPE 58 46 38 39 60 123 88

Figure S3983.  Get High-res Image Gene #1474: 'SPEN MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'SPEN MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0187 (Fisher's exact test), Q value = 0.14

Table S15582.  Gene #1474: 'SPEN MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
SPEN MUTATED 15 2 1 15
SPEN WILD-TYPE 115 76 67 181

Figure S3984.  Get High-res Image Gene #1474: 'SPEN MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'SPEN MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00879 (Fisher's exact test), Q value = 0.087

Table S15583.  Gene #1474: 'SPEN MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
SPEN MUTATED 2 5 2 4 12 0 2 4 2
SPEN WILD-TYPE 38 57 26 76 57 48 41 24 72

Figure S3985.  Get High-res Image Gene #1474: 'SPEN MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'SPEN MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0247 (Fisher's exact test), Q value = 0.16

Table S15584.  Gene #1474: 'SPEN MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
SPEN MUTATED 2 0 0 3
SPEN WILD-TYPE 31 31 27 16

Figure S3986.  Get High-res Image Gene #1474: 'SPEN MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'SPEN MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.757 (Fisher's exact test), Q value = 1

Table S15585.  Gene #1474: 'SPEN MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
SPEN MUTATED 4 0 1 0
SPEN WILD-TYPE 50 10 23 22
'IL1F8 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.417 (Fisher's exact test), Q value = 0.74

Table S15586.  Gene #1475: 'IL1F8 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
IL1F8 MUTATED 2 0 1 0
IL1F8 WILD-TYPE 176 183 100 20
'IL1F8 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.641 (Fisher's exact test), Q value = 0.93

Table S15587.  Gene #1475: 'IL1F8 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
IL1F8 MUTATED 0 1 2
IL1F8 WILD-TYPE 87 79 98
'IL1F8 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0696 (Fisher's exact test), Q value = 0.28

Table S15588.  Gene #1475: 'IL1F8 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
IL1F8 MUTATED 0 2 1 0
IL1F8 WILD-TYPE 112 94 91 186
'IL1F8 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0156 (Fisher's exact test), Q value = 0.12

Table S15589.  Gene #1475: 'IL1F8 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
IL1F8 MUTATED 0 0 2 1 0 0 0
IL1F8 WILD-TYPE 60 50 47 39 63 125 99

Figure S3987.  Get High-res Image Gene #1475: 'IL1F8 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'IL1F8 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0669 (Fisher's exact test), Q value = 0.28

Table S15590.  Gene #1475: 'IL1F8 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
IL1F8 MUTATED 3 0 0 0
IL1F8 WILD-TYPE 127 78 68 196
'IL1F8 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.283 (Fisher's exact test), Q value = 0.61

Table S15591.  Gene #1475: 'IL1F8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
IL1F8 MUTATED 1 0 0 0 2 0 0 0 0
IL1F8 WILD-TYPE 39 62 28 80 67 48 43 28 74
'CCR8 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0646 (Fisher's exact test), Q value = 0.28

Table S15592.  Gene #1476: 'CCR8 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
CCR8 MUTATED 1 0 0 2
CCR8 WILD-TYPE 45 58 64 41
'CCR8 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0136 (Fisher's exact test), Q value = 0.12

Table S15593.  Gene #1476: 'CCR8 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
CCR8 MUTATED 3 0 0
CCR8 WILD-TYPE 48 83 77

Figure S3988.  Get High-res Image Gene #1476: 'CCR8 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'CCR8 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.454 (Fisher's exact test), Q value = 0.78

Table S15594.  Gene #1476: 'CCR8 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
CCR8 MUTATED 3 2 1 1
CCR8 WILD-TYPE 175 181 100 19
'CCR8 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.689 (Fisher's exact test), Q value = 0.97

Table S15595.  Gene #1476: 'CCR8 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
CCR8 MUTATED 1 2 1
CCR8 WILD-TYPE 86 78 99
'CCR8 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.388 (Fisher's exact test), Q value = 0.71

Table S15596.  Gene #1476: 'CCR8 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
CCR8 MUTATED 0 4 2
CCR8 WILD-TYPE 89 156 136
'CCR8 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.666 (Fisher's exact test), Q value = 0.95

Table S15597.  Gene #1476: 'CCR8 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
CCR8 MUTATED 4 2 0
CCR8 WILD-TYPE 178 131 72
'CCR8 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S15598.  Gene #1476: 'CCR8 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
CCR8 MUTATED 2 1 1 3
CCR8 WILD-TYPE 110 95 91 183
'CCR8 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0742 (Fisher's exact test), Q value = 0.29

Table S15599.  Gene #1476: 'CCR8 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
CCR8 MUTATED 0 1 0 0 3 0 3
CCR8 WILD-TYPE 60 49 49 40 60 125 96
'CCR8 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0899 (Fisher's exact test), Q value = 0.33

Table S15600.  Gene #1476: 'CCR8 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
CCR8 MUTATED 0 3 1 2
CCR8 WILD-TYPE 130 75 67 194
'CCR8 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.459 (Fisher's exact test), Q value = 0.79

Table S15601.  Gene #1476: 'CCR8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
CCR8 MUTATED 0 2 0 0 2 1 1 0 0
CCR8 WILD-TYPE 40 60 28 80 67 47 42 28 74
'CCR8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.553 (Fisher's exact test), Q value = 0.87

Table S15602.  Gene #1476: 'CCR8 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
CCR8 MUTATED 1 2 0 0
CCR8 WILD-TYPE 32 29 27 19
'CCR8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.842 (Fisher's exact test), Q value = 1

Table S15603.  Gene #1476: 'CCR8 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
CCR8 MUTATED 2 0 0 1
CCR8 WILD-TYPE 52 10 24 21
'HSPBAP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.591 (Fisher's exact test), Q value = 0.9

Table S15604.  Gene #1477: 'HSPBAP1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
HSPBAP1 MUTATED 5 2 1 0
HSPBAP1 WILD-TYPE 173 181 100 20
'HSPBAP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.232 (Fisher's exact test), Q value = 0.55

Table S15605.  Gene #1477: 'HSPBAP1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
HSPBAP1 MUTATED 1 1 5
HSPBAP1 WILD-TYPE 86 79 95
'HSPBAP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.615 (Fisher's exact test), Q value = 0.91

Table S15606.  Gene #1477: 'HSPBAP1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
HSPBAP1 MUTATED 1 2 4
HSPBAP1 WILD-TYPE 88 158 134
'HSPBAP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.364 (Fisher's exact test), Q value = 0.69

Table S15607.  Gene #1477: 'HSPBAP1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
HSPBAP1 MUTATED 5 2 0
HSPBAP1 WILD-TYPE 177 131 72
'HSPBAP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.101 (Fisher's exact test), Q value = 0.35

Table S15608.  Gene #1477: 'HSPBAP1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
HSPBAP1 MUTATED 1 4 2 1
HSPBAP1 WILD-TYPE 111 92 90 185
'HSPBAP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00201 (Fisher's exact test), Q value = 0.038

Table S15609.  Gene #1477: 'HSPBAP1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
HSPBAP1 MUTATED 0 0 4 0 3 0 1
HSPBAP1 WILD-TYPE 60 50 45 40 60 125 98

Figure S3989.  Get High-res Image Gene #1477: 'HSPBAP1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'HSPBAP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0108 (Fisher's exact test), Q value = 0.1

Table S15610.  Gene #1477: 'HSPBAP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
HSPBAP1 MUTATED 5 2 0 0
HSPBAP1 WILD-TYPE 125 76 68 196

Figure S3990.  Get High-res Image Gene #1477: 'HSPBAP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'HSPBAP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.173 (Fisher's exact test), Q value = 0.47

Table S15611.  Gene #1477: 'HSPBAP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
HSPBAP1 MUTATED 0 2 0 1 4 0 0 0 0
HSPBAP1 WILD-TYPE 40 60 28 79 65 48 43 28 74
'HSPBAP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0657 (Fisher's exact test), Q value = 0.28

Table S15612.  Gene #1477: 'HSPBAP1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
HSPBAP1 MUTATED 0 2 0 2
HSPBAP1 WILD-TYPE 33 29 27 17
'HSPBAP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.176 (Fisher's exact test), Q value = 0.48

Table S15613.  Gene #1477: 'HSPBAP1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
HSPBAP1 MUTATED 1 1 2 0
HSPBAP1 WILD-TYPE 53 9 22 22
'XG MUTATION STATUS' versus 'CN_CNMF'

P value = 0.721 (Fisher's exact test), Q value = 0.99

Table S15614.  Gene #1478: 'XG MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
XG MUTATED 4 2 1 0
XG WILD-TYPE 174 181 100 20
'XG MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.45 (Fisher's exact test), Q value = 0.78

Table S15615.  Gene #1478: 'XG MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
XG MUTATED 1 3 1
XG WILD-TYPE 86 77 99
'XG MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.491 (Fisher's exact test), Q value = 0.82

Table S15616.  Gene #1478: 'XG MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
XG MUTATED 3 2 2
XG WILD-TYPE 86 158 136
'XG MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.684 (Fisher's exact test), Q value = 0.96

Table S15617.  Gene #1478: 'XG MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
XG MUTATED 4 3 0
XG WILD-TYPE 178 130 72
'XG MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0622 (Fisher's exact test), Q value = 0.27

Table S15618.  Gene #1478: 'XG MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
XG MUTATED 3 2 2 0
XG WILD-TYPE 109 94 90 186
'XG MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0441 (Fisher's exact test), Q value = 0.22

Table S15619.  Gene #1478: 'XG MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
XG MUTATED 2 2 1 0 2 0 0
XG WILD-TYPE 58 48 48 40 61 125 99

Figure S3991.  Get High-res Image Gene #1478: 'XG MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'XG MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.386 (Fisher's exact test), Q value = 0.71

Table S15620.  Gene #1478: 'XG MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
XG MUTATED 4 1 0 2
XG WILD-TYPE 126 77 68 194
'XG MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.816 (Fisher's exact test), Q value = 1

Table S15621.  Gene #1478: 'XG MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
XG MUTATED 1 1 0 2 0 1 0 1 1
XG WILD-TYPE 39 61 28 78 69 47 43 27 73
'XG MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.207 (Fisher's exact test), Q value = 0.51

Table S15622.  Gene #1478: 'XG MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
XG MUTATED 0 2 0 1
XG WILD-TYPE 33 29 27 18
'XG MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.195 (Fisher's exact test), Q value = 0.5

Table S15623.  Gene #1478: 'XG MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
XG MUTATED 1 1 0 1
XG WILD-TYPE 53 9 24 21
'UHRF1BP1L MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00038 (Fisher's exact test), Q value = 0.013

Table S15624.  Gene #1479: 'UHRF1BP1L MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
UHRF1BP1L MUTATED 6 0 0 2
UHRF1BP1L WILD-TYPE 40 58 64 41

Figure S3992.  Get High-res Image Gene #1479: 'UHRF1BP1L MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'UHRF1BP1L MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00022 (Fisher's exact test), Q value = 0.0088

Table S15625.  Gene #1479: 'UHRF1BP1L MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
UHRF1BP1L MUTATED 7 1 0
UHRF1BP1L WILD-TYPE 44 82 77

Figure S3993.  Get High-res Image Gene #1479: 'UHRF1BP1L MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'UHRF1BP1L MUTATION STATUS' versus 'CN_CNMF'

P value = 0.026 (Fisher's exact test), Q value = 0.16

Table S15626.  Gene #1479: 'UHRF1BP1L MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
UHRF1BP1L MUTATED 14 3 3 1
UHRF1BP1L WILD-TYPE 164 180 98 19

Figure S3994.  Get High-res Image Gene #1479: 'UHRF1BP1L MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'UHRF1BP1L MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0842 (Fisher's exact test), Q value = 0.31

Table S15627.  Gene #1479: 'UHRF1BP1L MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
UHRF1BP1L MUTATED 1 4 8
UHRF1BP1L WILD-TYPE 86 76 92
'UHRF1BP1L MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.461 (Fisher's exact test), Q value = 0.79

Table S15628.  Gene #1479: 'UHRF1BP1L MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
UHRF1BP1L MUTATED 2 7 8
UHRF1BP1L WILD-TYPE 87 153 130
'UHRF1BP1L MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.61 (Fisher's exact test), Q value = 0.91

Table S15629.  Gene #1479: 'UHRF1BP1L MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
UHRF1BP1L MUTATED 9 4 4
UHRF1BP1L WILD-TYPE 173 129 68
'UHRF1BP1L MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.967 (Fisher's exact test), Q value = 1

Table S15630.  Gene #1479: 'UHRF1BP1L MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
UHRF1BP1L MUTATED 4 5 4 8
UHRF1BP1L WILD-TYPE 108 91 88 178
'UHRF1BP1L MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0445 (Fisher's exact test), Q value = 0.22

Table S15631.  Gene #1479: 'UHRF1BP1L MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
UHRF1BP1L MUTATED 4 1 5 1 2 1 7
UHRF1BP1L WILD-TYPE 56 49 44 39 61 124 92

Figure S3995.  Get High-res Image Gene #1479: 'UHRF1BP1L MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'UHRF1BP1L MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.175 (Fisher's exact test), Q value = 0.47

Table S15632.  Gene #1479: 'UHRF1BP1L MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
UHRF1BP1L MUTATED 10 2 1 7
UHRF1BP1L WILD-TYPE 120 76 67 189
'UHRF1BP1L MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.02 (Fisher's exact test), Q value = 0.14

Table S15633.  Gene #1479: 'UHRF1BP1L MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
UHRF1BP1L MUTATED 3 1 0 3 8 2 3 0 0
UHRF1BP1L WILD-TYPE 37 61 28 77 61 46 40 28 74

Figure S3996.  Get High-res Image Gene #1479: 'UHRF1BP1L MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'UHRF1BP1L MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0312 (Fisher's exact test), Q value = 0.18

Table S15634.  Gene #1479: 'UHRF1BP1L MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
UHRF1BP1L MUTATED 2 1 0 4
UHRF1BP1L WILD-TYPE 31 30 27 15

Figure S3997.  Get High-res Image Gene #1479: 'UHRF1BP1L MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'UHRF1BP1L MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S15635.  Gene #1479: 'UHRF1BP1L MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
UHRF1BP1L MUTATED 4 0 2 1
UHRF1BP1L WILD-TYPE 50 10 22 21
'CATSPER2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00579 (Fisher's exact test), Q value = 0.069

Table S15636.  Gene #1480: 'CATSPER2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
CATSPER2 MUTATED 6 0 0 1
CATSPER2 WILD-TYPE 172 183 101 19

Figure S3998.  Get High-res Image Gene #1480: 'CATSPER2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'CATSPER2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.384 (Fisher's exact test), Q value = 0.71

Table S15637.  Gene #1480: 'CATSPER2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
CATSPER2 MUTATED 2 0 3
CATSPER2 WILD-TYPE 85 80 97
'CATSPER2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.434 (Fisher's exact test), Q value = 0.76

Table S15638.  Gene #1480: 'CATSPER2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
CATSPER2 MUTATED 0 4 3
CATSPER2 WILD-TYPE 89 156 135
'CATSPER2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.425 (Fisher's exact test), Q value = 0.75

Table S15639.  Gene #1480: 'CATSPER2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
CATSPER2 MUTATED 2 4 1
CATSPER2 WILD-TYPE 180 129 71
'CATSPER2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.456 (Fisher's exact test), Q value = 0.78

Table S15640.  Gene #1480: 'CATSPER2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
CATSPER2 MUTATED 0 2 2 3
CATSPER2 WILD-TYPE 112 94 90 183
'CATSPER2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.369 (Fisher's exact test), Q value = 0.7

Table S15641.  Gene #1480: 'CATSPER2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
CATSPER2 MUTATED 2 1 1 0 1 0 2
CATSPER2 WILD-TYPE 58 49 48 40 62 125 97
'CATSPER2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.944 (Fisher's exact test), Q value = 1

Table S15642.  Gene #1480: 'CATSPER2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
CATSPER2 MUTATED 1 1 1 4
CATSPER2 WILD-TYPE 129 77 67 192
'CATSPER2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.78 (Fisher's exact test), Q value = 1

Table S15643.  Gene #1480: 'CATSPER2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
CATSPER2 MUTATED 0 1 0 1 3 0 0 0 2
CATSPER2 WILD-TYPE 40 61 28 79 66 48 43 28 72
'PPP2R5E MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0243 (Fisher's exact test), Q value = 0.16

Table S15644.  Gene #1481: 'PPP2R5E MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
PPP2R5E MUTATED 7 0 1 0
PPP2R5E WILD-TYPE 171 183 100 20

Figure S3999.  Get High-res Image Gene #1481: 'PPP2R5E MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'PPP2R5E MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0658 (Fisher's exact test), Q value = 0.28

Table S15645.  Gene #1481: 'PPP2R5E MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
PPP2R5E MUTATED 1 0 5
PPP2R5E WILD-TYPE 86 80 95
'PPP2R5E MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.164 (Fisher's exact test), Q value = 0.46

Table S15646.  Gene #1481: 'PPP2R5E MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
PPP2R5E MUTATED 1 1 5
PPP2R5E WILD-TYPE 88 159 133
'PPP2R5E MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.19 (Fisher's exact test), Q value = 0.49

Table S15647.  Gene #1481: 'PPP2R5E MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
PPP2R5E MUTATED 6 1 0
PPP2R5E WILD-TYPE 176 132 72
'PPP2R5E MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.114 (Fisher's exact test), Q value = 0.37

Table S15648.  Gene #1481: 'PPP2R5E MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
PPP2R5E MUTATED 0 3 3 2
PPP2R5E WILD-TYPE 112 93 89 184
'PPP2R5E MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0606 (Fisher's exact test), Q value = 0.27

Table S15649.  Gene #1481: 'PPP2R5E MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
PPP2R5E MUTATED 0 1 3 0 1 0 3
PPP2R5E WILD-TYPE 60 49 46 40 62 125 96
'PPP2R5E MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.478 (Fisher's exact test), Q value = 0.81

Table S15650.  Gene #1481: 'PPP2R5E MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
PPP2R5E MUTATED 3 2 0 2
PPP2R5E WILD-TYPE 127 76 68 194
'PPP2R5E MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0724 (Fisher's exact test), Q value = 0.29

Table S15651.  Gene #1481: 'PPP2R5E MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
PPP2R5E MUTATED 1 2 0 0 4 0 0 0 0
PPP2R5E WILD-TYPE 39 60 28 80 65 48 43 28 74
'SPOPL MUTATION STATUS' versus 'CN_CNMF'

P value = 0.511 (Fisher's exact test), Q value = 0.83

Table S15652.  Gene #1482: 'SPOPL MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
SPOPL MUTATED 4 4 1 1
SPOPL WILD-TYPE 174 179 100 19
'SPOPL MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.906 (Fisher's exact test), Q value = 1

Table S15653.  Gene #1482: 'SPOPL MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
SPOPL MUTATED 2 3 3
SPOPL WILD-TYPE 85 77 97
'SPOPL MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.212 (Fisher's exact test), Q value = 0.52

Table S15654.  Gene #1482: 'SPOPL MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
SPOPL MUTATED 0 4 5
SPOPL WILD-TYPE 89 156 133
'SPOPL MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.499 (Fisher's exact test), Q value = 0.83

Table S15655.  Gene #1482: 'SPOPL MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
SPOPL MUTATED 3 5 1
SPOPL WILD-TYPE 179 128 71
'SPOPL MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.512 (Fisher's exact test), Q value = 0.83

Table S15656.  Gene #1482: 'SPOPL MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
SPOPL MUTATED 4 2 2 2
SPOPL WILD-TYPE 108 94 90 184
'SPOPL MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.129 (Fisher's exact test), Q value = 0.4

Table S15657.  Gene #1482: 'SPOPL MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
SPOPL MUTATED 3 2 1 0 2 0 2
SPOPL WILD-TYPE 57 48 48 40 61 125 97
'SPOPL MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.682 (Fisher's exact test), Q value = 0.96

Table S15658.  Gene #1482: 'SPOPL MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
SPOPL MUTATED 3 3 1 3
SPOPL WILD-TYPE 127 75 67 193
'SPOPL MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.433 (Fisher's exact test), Q value = 0.76

Table S15659.  Gene #1482: 'SPOPL MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
SPOPL MUTATED 2 2 0 0 1 1 2 1 1
SPOPL WILD-TYPE 38 60 28 80 68 47 41 27 73
'FCRL4 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.155 (Fisher's exact test), Q value = 0.44

Table S15660.  Gene #1483: 'FCRL4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
FCRL4 MUTATED 0 1 0 2
FCRL4 WILD-TYPE 46 57 64 41
'FCRL4 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S15661.  Gene #1483: 'FCRL4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
FCRL4 MUTATED 1 1 1
FCRL4 WILD-TYPE 50 82 76
'FCRL4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.538 (Fisher's exact test), Q value = 0.86

Table S15662.  Gene #1483: 'FCRL4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
FCRL4 MUTATED 7 5 1 0
FCRL4 WILD-TYPE 171 178 100 20
'FCRL4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.478 (Fisher's exact test), Q value = 0.81

Table S15663.  Gene #1483: 'FCRL4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
FCRL4 MUTATED 4 1 4
FCRL4 WILD-TYPE 83 79 96
'FCRL4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.329 (Fisher's exact test), Q value = 0.66

Table S15664.  Gene #1483: 'FCRL4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
FCRL4 MUTATED 1 7 3
FCRL4 WILD-TYPE 88 153 135
'FCRL4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.337 (Fisher's exact test), Q value = 0.66

Table S15665.  Gene #1483: 'FCRL4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
FCRL4 MUTATED 3 6 2
FCRL4 WILD-TYPE 179 127 70
'FCRL4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0511 (Fisher's exact test), Q value = 0.24

Table S15666.  Gene #1483: 'FCRL4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
FCRL4 MUTATED 0 5 4 4
FCRL4 WILD-TYPE 112 91 88 182
'FCRL4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.373 (Fisher's exact test), Q value = 0.7

Table S15667.  Gene #1483: 'FCRL4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
FCRL4 MUTATED 1 3 3 0 2 2 2
FCRL4 WILD-TYPE 59 47 46 40 61 123 97
'FCRL4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.845 (Fisher's exact test), Q value = 1

Table S15668.  Gene #1483: 'FCRL4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
FCRL4 MUTATED 5 2 1 5
FCRL4 WILD-TYPE 125 76 67 191
'FCRL4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.703 (Fisher's exact test), Q value = 0.97

Table S15669.  Gene #1483: 'FCRL4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
FCRL4 MUTATED 0 2 0 4 4 1 1 0 1
FCRL4 WILD-TYPE 40 60 28 76 65 47 42 28 73
'FCRL4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.265 (Fisher's exact test), Q value = 0.59

Table S15670.  Gene #1483: 'FCRL4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
FCRL4 MUTATED 1 1 1 3
FCRL4 WILD-TYPE 32 30 26 16
'FCRL4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0834 (Fisher's exact test), Q value = 0.31

Table S15671.  Gene #1483: 'FCRL4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
FCRL4 MUTATED 2 0 4 0
FCRL4 WILD-TYPE 52 10 20 22
'THRAP3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0234 (Fisher's exact test), Q value = 0.16

Table S15672.  Gene #1484: 'THRAP3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
THRAP3 MUTATED 2 0 0 3
THRAP3 WILD-TYPE 44 58 64 40

Figure S4000.  Get High-res Image Gene #1484: 'THRAP3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'THRAP3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00635 (Fisher's exact test), Q value = 0.073

Table S15673.  Gene #1484: 'THRAP3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
THRAP3 MUTATED 4 0 1
THRAP3 WILD-TYPE 47 83 76

Figure S4001.  Get High-res Image Gene #1484: 'THRAP3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'THRAP3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00028 (Fisher's exact test), Q value = 0.01

Table S15674.  Gene #1484: 'THRAP3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
THRAP3 MUTATED 11 0 0 0
THRAP3 WILD-TYPE 167 183 101 20

Figure S4002.  Get High-res Image Gene #1484: 'THRAP3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'THRAP3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.714 (Fisher's exact test), Q value = 0.98

Table S15675.  Gene #1484: 'THRAP3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
THRAP3 MUTATED 3 1 3
THRAP3 WILD-TYPE 84 79 97
'THRAP3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0228 (Fisher's exact test), Q value = 0.15

Table S15676.  Gene #1484: 'THRAP3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
THRAP3 MUTATED 2 1 8
THRAP3 WILD-TYPE 87 159 130

Figure S4003.  Get High-res Image Gene #1484: 'THRAP3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'THRAP3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0566 (Fisher's exact test), Q value = 0.26

Table S15677.  Gene #1484: 'THRAP3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
THRAP3 MUTATED 9 1 1
THRAP3 WILD-TYPE 173 132 71
'THRAP3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.611 (Fisher's exact test), Q value = 0.91

Table S15678.  Gene #1484: 'THRAP3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
THRAP3 MUTATED 1 3 3 5
THRAP3 WILD-TYPE 111 93 89 181
'THRAP3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0345 (Fisher's exact test), Q value = 0.19

Table S15679.  Gene #1484: 'THRAP3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
THRAP3 MUTATED 1 1 4 0 2 0 4
THRAP3 WILD-TYPE 59 49 45 40 61 125 95

Figure S4004.  Get High-res Image Gene #1484: 'THRAP3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'THRAP3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.513 (Fisher's exact test), Q value = 0.83

Table S15680.  Gene #1484: 'THRAP3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
THRAP3 MUTATED 3 3 0 5
THRAP3 WILD-TYPE 127 75 68 191
'THRAP3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00456 (Fisher's exact test), Q value = 0.061

Table S15681.  Gene #1484: 'THRAP3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
THRAP3 MUTATED 1 2 0 0 7 1 0 0 0
THRAP3 WILD-TYPE 39 60 28 80 62 47 43 28 74

Figure S4005.  Get High-res Image Gene #1484: 'THRAP3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'ATP2B4 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0089 (Fisher's exact test), Q value = 0.088

Table S15682.  Gene #1485: 'ATP2B4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ATP2B4 MUTATED 3 0 0 3
ATP2B4 WILD-TYPE 43 58 64 40

Figure S4006.  Get High-res Image Gene #1485: 'ATP2B4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'ATP2B4 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.88 (Fisher's exact test), Q value = 1

Table S15683.  Gene #1485: 'ATP2B4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ATP2B4 MUTATED 2 2 2
ATP2B4 WILD-TYPE 49 81 75
'ATP2B4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00298 (Fisher's exact test), Q value = 0.049

Table S15684.  Gene #1485: 'ATP2B4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ATP2B4 MUTATED 13 1 6 1
ATP2B4 WILD-TYPE 165 182 95 19

Figure S4007.  Get High-res Image Gene #1485: 'ATP2B4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ATP2B4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.598 (Fisher's exact test), Q value = 0.9

Table S15685.  Gene #1485: 'ATP2B4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ATP2B4 MUTATED 5 6 4
ATP2B4 WILD-TYPE 82 74 96
'ATP2B4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.263 (Fisher's exact test), Q value = 0.59

Table S15686.  Gene #1485: 'ATP2B4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ATP2B4 MUTATED 1 8 7
ATP2B4 WILD-TYPE 88 152 131
'ATP2B4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.752 (Fisher's exact test), Q value = 1

Table S15687.  Gene #1485: 'ATP2B4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ATP2B4 MUTATED 7 7 2
ATP2B4 WILD-TYPE 175 126 70
'ATP2B4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.327 (Fisher's exact test), Q value = 0.66

Table S15688.  Gene #1485: 'ATP2B4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ATP2B4 MUTATED 7 6 3 5
ATP2B4 WILD-TYPE 105 90 89 181
'ATP2B4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.048 (Fisher's exact test), Q value = 0.23

Table S15689.  Gene #1485: 'ATP2B4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ATP2B4 MUTATED 5 1 5 2 3 1 4
ATP2B4 WILD-TYPE 55 49 44 38 60 124 95

Figure S4008.  Get High-res Image Gene #1485: 'ATP2B4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ATP2B4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.519 (Fisher's exact test), Q value = 0.84

Table S15690.  Gene #1485: 'ATP2B4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ATP2B4 MUTATED 9 3 2 7
ATP2B4 WILD-TYPE 121 75 66 189
'ATP2B4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.535 (Fisher's exact test), Q value = 0.85

Table S15691.  Gene #1485: 'ATP2B4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ATP2B4 MUTATED 2 4 1 3 5 4 1 0 1
ATP2B4 WILD-TYPE 38 58 27 77 64 44 42 28 73
'ATP2B4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.691 (Fisher's exact test), Q value = 0.97

Table S15692.  Gene #1485: 'ATP2B4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
ATP2B4 MUTATED 1 2 1 2
ATP2B4 WILD-TYPE 32 29 26 17
'ATP2B4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.923 (Fisher's exact test), Q value = 1

Table S15693.  Gene #1485: 'ATP2B4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
ATP2B4 MUTATED 3 0 2 1
ATP2B4 WILD-TYPE 51 10 22 21
'PCDHGA8 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0739 (Fisher's exact test), Q value = 0.29

Table S15694.  Gene #1486: 'PCDHGA8 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
PCDHGA8 MUTATED 2 0 0 2
PCDHGA8 WILD-TYPE 44 58 64 41
'PCDHGA8 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.557 (Fisher's exact test), Q value = 0.87

Table S15695.  Gene #1486: 'PCDHGA8 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
PCDHGA8 MUTATED 2 1 1
PCDHGA8 WILD-TYPE 49 82 76
'PCDHGA8 MUTATION STATUS' versus 'CN_CNMF'

P value = 9e-05 (Fisher's exact test), Q value = 0.0048

Table S15696.  Gene #1486: 'PCDHGA8 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
PCDHGA8 MUTATED 16 2 0 0
PCDHGA8 WILD-TYPE 162 181 101 20

Figure S4009.  Get High-res Image Gene #1486: 'PCDHGA8 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'PCDHGA8 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.404 (Fisher's exact test), Q value = 0.73

Table S15697.  Gene #1486: 'PCDHGA8 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
PCDHGA8 MUTATED 5 2 7
PCDHGA8 WILD-TYPE 82 78 93
'PCDHGA8 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.46 (Fisher's exact test), Q value = 0.79

Table S15698.  Gene #1486: 'PCDHGA8 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
PCDHGA8 MUTATED 2 7 8
PCDHGA8 WILD-TYPE 87 153 130
'PCDHGA8 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.574 (Fisher's exact test), Q value = 0.88

Table S15699.  Gene #1486: 'PCDHGA8 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
PCDHGA8 MUTATED 6 7 4
PCDHGA8 WILD-TYPE 176 126 68
'PCDHGA8 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.251 (Fisher's exact test), Q value = 0.58

Table S15700.  Gene #1486: 'PCDHGA8 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
PCDHGA8 MUTATED 4 7 2 5
PCDHGA8 WILD-TYPE 108 89 90 181
'PCDHGA8 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00127 (Fisher's exact test), Q value = 0.029

Table S15701.  Gene #1486: 'PCDHGA8 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
PCDHGA8 MUTATED 4 3 6 0 1 0 4
PCDHGA8 WILD-TYPE 56 47 43 40 62 125 95

Figure S4010.  Get High-res Image Gene #1486: 'PCDHGA8 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'PCDHGA8 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0982 (Fisher's exact test), Q value = 0.34

Table S15702.  Gene #1486: 'PCDHGA8 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
PCDHGA8 MUTATED 9 2 0 7
PCDHGA8 WILD-TYPE 121 76 68 189
'PCDHGA8 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0089 (Fisher's exact test), Q value = 0.088

Table S15703.  Gene #1486: 'PCDHGA8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
PCDHGA8 MUTATED 0 2 3 0 7 3 0 1 2
PCDHGA8 WILD-TYPE 40 60 25 80 62 45 43 27 72

Figure S4011.  Get High-res Image Gene #1486: 'PCDHGA8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'PCDHGA8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0923 (Fisher's exact test), Q value = 0.33

Table S15704.  Gene #1486: 'PCDHGA8 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
PCDHGA8 MUTATED 2 0 1 3
PCDHGA8 WILD-TYPE 31 31 26 16
'PCDHGA8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.158 (Fisher's exact test), Q value = 0.45

Table S15705.  Gene #1486: 'PCDHGA8 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
PCDHGA8 MUTATED 1 0 3 2
PCDHGA8 WILD-TYPE 53 10 21 20
'TRIM46 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00013 (Fisher's exact test), Q value = 0.0063

Table S15706.  Gene #1487: 'TRIM46 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
TRIM46 MUTATED 13 0 1 1
TRIM46 WILD-TYPE 165 183 100 19

Figure S4012.  Get High-res Image Gene #1487: 'TRIM46 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'TRIM46 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0394 (Fisher's exact test), Q value = 0.21

Table S15707.  Gene #1487: 'TRIM46 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
TRIM46 MUTATED 6 0 6
TRIM46 WILD-TYPE 81 80 94

Figure S4013.  Get High-res Image Gene #1487: 'TRIM46 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'TRIM46 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.736 (Fisher's exact test), Q value = 1

Table S15708.  Gene #1487: 'TRIM46 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
TRIM46 MUTATED 2 6 6
TRIM46 WILD-TYPE 87 154 132
'TRIM46 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S15709.  Gene #1487: 'TRIM46 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
TRIM46 MUTATED 7 5 2
TRIM46 WILD-TYPE 175 128 70
'TRIM46 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0123 (Fisher's exact test), Q value = 0.11

Table S15710.  Gene #1487: 'TRIM46 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
TRIM46 MUTATED 1 8 3 3
TRIM46 WILD-TYPE 111 88 89 183

Figure S4014.  Get High-res Image Gene #1487: 'TRIM46 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'TRIM46 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00023 (Fisher's exact test), Q value = 0.0091

Table S15711.  Gene #1487: 'TRIM46 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
TRIM46 MUTATED 0 2 7 1 1 0 4
TRIM46 WILD-TYPE 60 48 42 39 62 125 95

Figure S4015.  Get High-res Image Gene #1487: 'TRIM46 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'TRIM46 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.634 (Fisher's exact test), Q value = 0.93

Table S15712.  Gene #1487: 'TRIM46 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
TRIM46 MUTATED 6 3 1 5
TRIM46 WILD-TYPE 124 75 67 191
'TRIM46 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0552 (Fisher's exact test), Q value = 0.26

Table S15713.  Gene #1487: 'TRIM46 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
TRIM46 MUTATED 3 3 1 1 6 0 0 0 1
TRIM46 WILD-TYPE 37 59 27 79 63 48 43 28 73
'TRIM46 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0254 (Fisher's exact test), Q value = 0.16

Table S15714.  Gene #1487: 'TRIM46 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
TRIM46 MUTATED 1 0 0 3
TRIM46 WILD-TYPE 32 31 27 16

Figure S4016.  Get High-res Image Gene #1487: 'TRIM46 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'TRIM46 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.87 (Fisher's exact test), Q value = 1

Table S15715.  Gene #1487: 'TRIM46 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
TRIM46 MUTATED 3 0 1 0
TRIM46 WILD-TYPE 51 10 23 22
'TNKS MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.44 (Fisher's exact test), Q value = 0.77

Table S15716.  Gene #1488: 'TNKS MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
TNKS MUTATED 2 0 1 1
TNKS WILD-TYPE 44 58 63 42
'TNKS MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0399 (Fisher's exact test), Q value = 0.21

Table S15717.  Gene #1488: 'TNKS MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
TNKS MUTATED 3 0 1
TNKS WILD-TYPE 48 83 76

Figure S4017.  Get High-res Image Gene #1488: 'TNKS MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'TNKS MUTATION STATUS' versus 'CN_CNMF'

P value = 0.127 (Fisher's exact test), Q value = 0.4

Table S15718.  Gene #1488: 'TNKS MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
TNKS MUTATED 7 1 1 0
TNKS WILD-TYPE 171 182 100 20
'TNKS MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.139 (Fisher's exact test), Q value = 0.41

Table S15719.  Gene #1488: 'TNKS MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
TNKS MUTATED 4 0 2
TNKS WILD-TYPE 83 80 98
'TNKS MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.154 (Fisher's exact test), Q value = 0.44

Table S15720.  Gene #1488: 'TNKS MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
TNKS MUTATED 2 1 5
TNKS WILD-TYPE 87 159 133
'TNKS MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.893 (Fisher's exact test), Q value = 1

Table S15721.  Gene #1488: 'TNKS MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
TNKS MUTATED 5 2 1
TNKS WILD-TYPE 177 131 71
'TNKS MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.027 (Fisher's exact test), Q value = 0.17

Table S15722.  Gene #1488: 'TNKS MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
TNKS MUTATED 0 4 4 2
TNKS WILD-TYPE 112 92 88 184

Figure S4018.  Get High-res Image Gene #1488: 'TNKS MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'TNKS MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0282 (Fisher's exact test), Q value = 0.17

Table S15723.  Gene #1488: 'TNKS MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
TNKS MUTATED 0 2 4 0 0 1 3
TNKS WILD-TYPE 60 48 45 40 63 124 96

Figure S4019.  Get High-res Image Gene #1488: 'TNKS MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'TNKS MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0329 (Fisher's exact test), Q value = 0.19

Table S15724.  Gene #1488: 'TNKS MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
TNKS MUTATED 0 2 0 8
TNKS WILD-TYPE 130 76 68 188

Figure S4020.  Get High-res Image Gene #1488: 'TNKS MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'TNKS MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.461 (Fisher's exact test), Q value = 0.79

Table S15725.  Gene #1488: 'TNKS MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
TNKS MUTATED 0 2 0 1 4 0 0 1 2
TNKS WILD-TYPE 40 60 28 79 65 48 43 27 72
'TNKS MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.136 (Fisher's exact test), Q value = 0.41

Table S15726.  Gene #1488: 'TNKS MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
TNKS MUTATED 1 0 0 2
TNKS WILD-TYPE 32 31 27 17
'TNKS MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S15727.  Gene #1488: 'TNKS MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
TNKS MUTATED 2 0 1 0
TNKS WILD-TYPE 52 10 23 22
'ADAM20 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.34 (Fisher's exact test), Q value = 0.67

Table S15728.  Gene #1489: 'ADAM20 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ADAM20 MUTATED 2 1 3 0
ADAM20 WILD-TYPE 176 182 98 20
'ADAM20 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S15729.  Gene #1489: 'ADAM20 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ADAM20 MUTATED 2 1 2
ADAM20 WILD-TYPE 85 79 98
'ADAM20 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.197 (Fisher's exact test), Q value = 0.5

Table S15730.  Gene #1489: 'ADAM20 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ADAM20 MUTATED 3 1 2
ADAM20 WILD-TYPE 86 159 136
'ADAM20 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.41 (Fisher's exact test), Q value = 0.74

Table S15731.  Gene #1489: 'ADAM20 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ADAM20 MUTATED 3 1 2
ADAM20 WILD-TYPE 179 132 70
'ADAM20 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0451 (Fisher's exact test), Q value = 0.23

Table S15732.  Gene #1489: 'ADAM20 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ADAM20 MUTATED 1 2 3 0
ADAM20 WILD-TYPE 111 94 89 186

Figure S4021.  Get High-res Image Gene #1489: 'ADAM20 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'ADAM20 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.129 (Fisher's exact test), Q value = 0.4

Table S15733.  Gene #1489: 'ADAM20 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ADAM20 MUTATED 0 1 1 2 1 0 1
ADAM20 WILD-TYPE 60 49 48 38 62 125 98
'ADAM20 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.479 (Fisher's exact test), Q value = 0.81

Table S15734.  Gene #1489: 'ADAM20 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ADAM20 MUTATED 1 1 2 2
ADAM20 WILD-TYPE 129 77 66 194
'ADAM20 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.431 (Fisher's exact test), Q value = 0.76

Table S15735.  Gene #1489: 'ADAM20 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ADAM20 MUTATED 0 1 1 1 1 0 2 0 0
ADAM20 WILD-TYPE 40 61 27 79 68 48 41 28 74
'ADAM20 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.698 (Fisher's exact test), Q value = 0.97

Table S15736.  Gene #1489: 'ADAM20 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
ADAM20 MUTATED 2 1 0 1
ADAM20 WILD-TYPE 31 30 27 18
'ADAM20 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.111 (Fisher's exact test), Q value = 0.37

Table S15737.  Gene #1489: 'ADAM20 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
ADAM20 MUTATED 1 0 0 3
ADAM20 WILD-TYPE 53 10 24 19
'CDK5RAP2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.016 (Fisher's exact test), Q value = 0.13

Table S15738.  Gene #1490: 'CDK5RAP2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
CDK5RAP2 MUTATED 1 0 0 3
CDK5RAP2 WILD-TYPE 45 58 64 40

Figure S4022.  Get High-res Image Gene #1490: 'CDK5RAP2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'CDK5RAP2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.555 (Fisher's exact test), Q value = 0.87

Table S15739.  Gene #1490: 'CDK5RAP2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
CDK5RAP2 MUTATED 2 1 1
CDK5RAP2 WILD-TYPE 49 82 76
'CDK5RAP2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00034 (Fisher's exact test), Q value = 0.012

Table S15740.  Gene #1490: 'CDK5RAP2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
CDK5RAP2 MUTATED 20 3 2 0
CDK5RAP2 WILD-TYPE 158 180 99 20

Figure S4023.  Get High-res Image Gene #1490: 'CDK5RAP2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'CDK5RAP2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.305 (Fisher's exact test), Q value = 0.63

Table S15741.  Gene #1490: 'CDK5RAP2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
CDK5RAP2 MUTATED 7 3 10
CDK5RAP2 WILD-TYPE 80 77 90
'CDK5RAP2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.14 (Fisher's exact test), Q value = 0.42

Table S15742.  Gene #1490: 'CDK5RAP2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
CDK5RAP2 MUTATED 2 10 12
CDK5RAP2 WILD-TYPE 87 150 126
'CDK5RAP2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.15 (Fisher's exact test), Q value = 0.43

Table S15743.  Gene #1490: 'CDK5RAP2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
CDK5RAP2 MUTATED 14 9 1
CDK5RAP2 WILD-TYPE 168 124 71
'CDK5RAP2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.161 (Fisher's exact test), Q value = 0.45

Table S15744.  Gene #1490: 'CDK5RAP2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
CDK5RAP2 MUTATED 4 8 7 6
CDK5RAP2 WILD-TYPE 108 88 85 180
'CDK5RAP2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 2e-05 (Fisher's exact test), Q value = 0.0017

Table S15745.  Gene #1490: 'CDK5RAP2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
CDK5RAP2 MUTATED 3 3 10 0 4 0 5
CDK5RAP2 WILD-TYPE 57 47 39 40 59 125 94

Figure S4024.  Get High-res Image Gene #1490: 'CDK5RAP2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CDK5RAP2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0788 (Fisher's exact test), Q value = 0.3

Table S15746.  Gene #1490: 'CDK5RAP2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
CDK5RAP2 MUTATED 12 4 1 7
CDK5RAP2 WILD-TYPE 118 74 67 189
'CDK5RAP2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0268 (Fisher's exact test), Q value = 0.17

Table S15747.  Gene #1490: 'CDK5RAP2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
CDK5RAP2 MUTATED 1 7 4 2 5 0 3 0 2
CDK5RAP2 WILD-TYPE 39 55 24 78 64 48 40 28 72

Figure S4025.  Get High-res Image Gene #1490: 'CDK5RAP2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'CDK5RAP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00363 (Fisher's exact test), Q value = 0.055

Table S15748.  Gene #1490: 'CDK5RAP2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
CDK5RAP2 MUTATED 1 0 0 4
CDK5RAP2 WILD-TYPE 32 31 27 15

Figure S4026.  Get High-res Image Gene #1490: 'CDK5RAP2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'CDK5RAP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.577 (Fisher's exact test), Q value = 0.88

Table S15749.  Gene #1490: 'CDK5RAP2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
CDK5RAP2 MUTATED 3 0 2 0
CDK5RAP2 WILD-TYPE 51 10 22 22
'NXPH1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00783 (Fisher's exact test), Q value = 0.083

Table S15750.  Gene #1491: 'NXPH1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
NXPH1 MUTATED 0 0 0 3
NXPH1 WILD-TYPE 46 58 64 40

Figure S4027.  Get High-res Image Gene #1491: 'NXPH1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'NXPH1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S15751.  Gene #1491: 'NXPH1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
NXPH1 MUTATED 1 1 1
NXPH1 WILD-TYPE 50 82 76
'NXPH1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.334 (Fisher's exact test), Q value = 0.66

Table S15752.  Gene #1491: 'NXPH1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
NXPH1 MUTATED 5 1 2 0
NXPH1 WILD-TYPE 173 182 99 20
'NXPH1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.137 (Fisher's exact test), Q value = 0.41

Table S15753.  Gene #1491: 'NXPH1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
NXPH1 MUTATED 4 0 2
NXPH1 WILD-TYPE 83 80 98
'NXPH1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.909 (Fisher's exact test), Q value = 1

Table S15754.  Gene #1491: 'NXPH1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
NXPH1 MUTATED 2 3 4
NXPH1 WILD-TYPE 87 157 134
'NXPH1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.328 (Fisher's exact test), Q value = 0.66

Table S15755.  Gene #1491: 'NXPH1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
NXPH1 MUTATED 6 1 2
NXPH1 WILD-TYPE 176 132 70
'NXPH1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.259 (Fisher's exact test), Q value = 0.58

Table S15756.  Gene #1491: 'NXPH1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
NXPH1 MUTATED 1 4 2 2
NXPH1 WILD-TYPE 111 92 90 184
'NXPH1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0311 (Fisher's exact test), Q value = 0.18

Table S15757.  Gene #1491: 'NXPH1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
NXPH1 MUTATED 0 2 2 2 0 0 3
NXPH1 WILD-TYPE 60 48 47 38 63 125 96

Figure S4028.  Get High-res Image Gene #1491: 'NXPH1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'NXPH1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.683 (Fisher's exact test), Q value = 0.96

Table S15758.  Gene #1491: 'NXPH1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
NXPH1 MUTATED 3 2 1 2
NXPH1 WILD-TYPE 127 76 67 194
'NXPH1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.107 (Fisher's exact test), Q value = 0.36

Table S15759.  Gene #1491: 'NXPH1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
NXPH1 MUTATED 2 1 2 0 1 1 1 0 0
NXPH1 WILD-TYPE 38 61 26 80 68 47 42 28 74
'NXPH1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.666 (Fisher's exact test), Q value = 0.95

Table S15760.  Gene #1491: 'NXPH1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
NXPH1 MUTATED 1 1 1 2
NXPH1 WILD-TYPE 32 30 26 17
'NXPH1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S15761.  Gene #1491: 'NXPH1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
NXPH1 MUTATED 3 0 1 1
NXPH1 WILD-TYPE 51 10 23 21
'ATP10B MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.119 (Fisher's exact test), Q value = 0.38

Table S15762.  Gene #1492: 'ATP10B MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ATP10B MUTATED 2 0 0 1
ATP10B WILD-TYPE 44 58 64 42
'ATP10B MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.185 (Fisher's exact test), Q value = 0.49

Table S15763.  Gene #1492: 'ATP10B MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ATP10B MUTATED 2 0 1
ATP10B WILD-TYPE 49 83 76
'ATP10B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.167 (Fisher's exact test), Q value = 0.46

Table S15764.  Gene #1492: 'ATP10B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ATP10B MUTATED 11 4 2 0
ATP10B WILD-TYPE 167 179 99 20
'ATP10B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.834 (Fisher's exact test), Q value = 1

Table S15765.  Gene #1492: 'ATP10B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ATP10B MUTATED 5 3 6
ATP10B WILD-TYPE 82 77 94
'ATP10B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.71 (Fisher's exact test), Q value = 0.98

Table S15766.  Gene #1492: 'ATP10B MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ATP10B MUTATED 3 5 7
ATP10B WILD-TYPE 86 155 131
'ATP10B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.941 (Fisher's exact test), Q value = 1

Table S15767.  Gene #1492: 'ATP10B MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ATP10B MUTATED 8 5 2
ATP10B WILD-TYPE 174 128 70
'ATP10B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.201 (Fisher's exact test), Q value = 0.51

Table S15768.  Gene #1492: 'ATP10B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ATP10B MUTATED 4 6 4 3
ATP10B WILD-TYPE 108 90 88 183
'ATP10B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00563 (Fisher's exact test), Q value = 0.068

Table S15769.  Gene #1492: 'ATP10B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ATP10B MUTATED 2 3 5 0 4 0 3
ATP10B WILD-TYPE 58 47 44 40 59 125 96

Figure S4029.  Get High-res Image Gene #1492: 'ATP10B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ATP10B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0384 (Fisher's exact test), Q value = 0.21

Table S15770.  Gene #1492: 'ATP10B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ATP10B MUTATED 7 6 1 3
ATP10B WILD-TYPE 123 72 67 193

Figure S4030.  Get High-res Image Gene #1492: 'ATP10B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'ATP10B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.161 (Fisher's exact test), Q value = 0.45

Table S15771.  Gene #1492: 'ATP10B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ATP10B MUTATED 2 5 1 2 4 0 2 1 0
ATP10B WILD-TYPE 38 57 27 78 65 48 41 27 74
'ATP10B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.306 (Fisher's exact test), Q value = 0.64

Table S15772.  Gene #1492: 'ATP10B MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
ATP10B MUTATED 2 0 1 2
ATP10B WILD-TYPE 31 31 26 17
'ATP10B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.578 (Fisher's exact test), Q value = 0.88

Table S15773.  Gene #1492: 'ATP10B MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
ATP10B MUTATED 3 0 2 0
ATP10B WILD-TYPE 51 10 22 22
'ERGIC1 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S15774.  Gene #1493: 'ERGIC1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ERGIC1 MUTATED 2 2 1 0
ERGIC1 WILD-TYPE 176 181 100 20
'ERGIC1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.629 (Fisher's exact test), Q value = 0.93

Table S15775.  Gene #1493: 'ERGIC1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ERGIC1 MUTATED 1 1 3
ERGIC1 WILD-TYPE 86 79 97
'ERGIC1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.136 (Fisher's exact test), Q value = 0.41

Table S15776.  Gene #1493: 'ERGIC1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ERGIC1 MUTATED 0 1 4
ERGIC1 WILD-TYPE 89 159 134
'ERGIC1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.506 (Fisher's exact test), Q value = 0.83

Table S15777.  Gene #1493: 'ERGIC1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ERGIC1 MUTATED 4 1 0
ERGIC1 WILD-TYPE 178 132 72
'ERGIC1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0507 (Fisher's exact test), Q value = 0.24

Table S15778.  Gene #1493: 'ERGIC1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ERGIC1 MUTATED 1 1 3 0
ERGIC1 WILD-TYPE 111 95 89 186
'ERGIC1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0258 (Fisher's exact test), Q value = 0.16

Table S15779.  Gene #1493: 'ERGIC1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ERGIC1 MUTATED 2 1 2 0 0 0 0
ERGIC1 WILD-TYPE 58 49 47 40 63 125 99

Figure S4031.  Get High-res Image Gene #1493: 'ERGIC1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ERGIC1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.128 (Fisher's exact test), Q value = 0.4

Table S15780.  Gene #1493: 'ERGIC1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ERGIC1 MUTATED 4 0 0 1
ERGIC1 WILD-TYPE 126 78 68 195
'ERGIC1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.365 (Fisher's exact test), Q value = 0.69

Table S15781.  Gene #1493: 'ERGIC1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ERGIC1 MUTATED 1 0 0 1 1 0 2 0 0
ERGIC1 WILD-TYPE 39 62 28 79 68 48 41 28 74
'IVD MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0538 (Fisher's exact test), Q value = 0.25

Table S15782.  Gene #1494: 'IVD MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
IVD MUTATED 4 0 1 1
IVD WILD-TYPE 174 183 100 19
'IVD MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.328 (Fisher's exact test), Q value = 0.66

Table S15783.  Gene #1494: 'IVD MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
IVD MUTATED 4 1 1
IVD WILD-TYPE 83 79 99
'IVD MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0789 (Fisher's exact test), Q value = 0.3

Table S15784.  Gene #1494: 'IVD MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
IVD MUTATED 0 1 5
IVD WILD-TYPE 89 159 133
'IVD MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.141 (Fisher's exact test), Q value = 0.42

Table S15785.  Gene #1494: 'IVD MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
IVD MUTATED 5 0 1
IVD WILD-TYPE 177 133 71
'IVD MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0167 (Fisher's exact test), Q value = 0.13

Table S15786.  Gene #1494: 'IVD MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
IVD MUTATED 1 1 4 0
IVD WILD-TYPE 111 95 88 186

Figure S4032.  Get High-res Image Gene #1494: 'IVD MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'IVD MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00234 (Fisher's exact test), Q value = 0.042

Table S15787.  Gene #1494: 'IVD MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
IVD MUTATED 1 0 3 2 0 0 0
IVD WILD-TYPE 59 50 46 38 63 125 99

Figure S4033.  Get High-res Image Gene #1494: 'IVD MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'IVD MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0196 (Fisher's exact test), Q value = 0.14

Table S15788.  Gene #1494: 'IVD MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
IVD MUTATED 3 3 0 0
IVD WILD-TYPE 127 75 68 196

Figure S4034.  Get High-res Image Gene #1494: 'IVD MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'IVD MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0382 (Fisher's exact test), Q value = 0.2

Table S15789.  Gene #1494: 'IVD MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
IVD MUTATED 2 3 0 0 0 1 0 0 0
IVD WILD-TYPE 38 59 28 80 69 47 43 28 74

Figure S4035.  Get High-res Image Gene #1494: 'IVD MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'YTHDF2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00118 (Fisher's exact test), Q value = 0.027

Table S15790.  Gene #1495: 'YTHDF2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
YTHDF2 MUTATED 11 0 1 0
YTHDF2 WILD-TYPE 167 183 100 20

Figure S4036.  Get High-res Image Gene #1495: 'YTHDF2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'YTHDF2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0549 (Fisher's exact test), Q value = 0.25

Table S15791.  Gene #1495: 'YTHDF2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
YTHDF2 MUTATED 6 0 4
YTHDF2 WILD-TYPE 81 80 96
'YTHDF2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0747 (Fisher's exact test), Q value = 0.29

Table S15792.  Gene #1495: 'YTHDF2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
YTHDF2 MUTATED 0 4 7
YTHDF2 WILD-TYPE 89 156 131
'YTHDF2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.85 (Fisher's exact test), Q value = 1

Table S15793.  Gene #1495: 'YTHDF2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
YTHDF2 MUTATED 6 4 1
YTHDF2 WILD-TYPE 176 129 71
'YTHDF2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0611 (Fisher's exact test), Q value = 0.27

Table S15794.  Gene #1495: 'YTHDF2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
YTHDF2 MUTATED 2 2 6 2
YTHDF2 WILD-TYPE 110 94 86 184
'YTHDF2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00012 (Fisher's exact test), Q value = 0.0059

Table S15795.  Gene #1495: 'YTHDF2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
YTHDF2 MUTATED 1 2 7 0 1 0 1
YTHDF2 WILD-TYPE 59 48 42 40 62 125 98

Figure S4037.  Get High-res Image Gene #1495: 'YTHDF2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'YTHDF2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0352 (Fisher's exact test), Q value = 0.19

Table S15796.  Gene #1495: 'YTHDF2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
YTHDF2 MUTATED 6 4 0 2
YTHDF2 WILD-TYPE 124 74 68 194

Figure S4038.  Get High-res Image Gene #1495: 'YTHDF2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'YTHDF2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00909 (Fisher's exact test), Q value = 0.089

Table S15797.  Gene #1495: 'YTHDF2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
YTHDF2 MUTATED 2 6 1 0 2 1 0 0 0
YTHDF2 WILD-TYPE 38 56 27 80 67 47 43 28 74

Figure S4039.  Get High-res Image Gene #1495: 'YTHDF2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'YTHDF2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0245 (Fisher's exact test), Q value = 0.16

Table S15798.  Gene #1495: 'YTHDF2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
YTHDF2 MUTATED 2 0 0 3
YTHDF2 WILD-TYPE 31 31 27 16

Figure S4040.  Get High-res Image Gene #1495: 'YTHDF2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'YTHDF2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.633 (Fisher's exact test), Q value = 0.93

Table S15799.  Gene #1495: 'YTHDF2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
YTHDF2 MUTATED 4 0 0 1
YTHDF2 WILD-TYPE 50 10 24 21
'KCNN4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.351 (Fisher's exact test), Q value = 0.68

Table S15800.  Gene #1496: 'KCNN4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
KCNN4 MUTATED 2 2 2 1
KCNN4 WILD-TYPE 176 181 99 19
'KCNN4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.204 (Fisher's exact test), Q value = 0.51

Table S15801.  Gene #1496: 'KCNN4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
KCNN4 MUTATED 3 0 4
KCNN4 WILD-TYPE 84 80 96
'KCNN4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.376 (Fisher's exact test), Q value = 0.71

Table S15802.  Gene #1496: 'KCNN4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
KCNN4 MUTATED 0 2 3
KCNN4 WILD-TYPE 89 158 135
'KCNN4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.17 (Fisher's exact test), Q value = 0.47

Table S15803.  Gene #1496: 'KCNN4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
KCNN4 MUTATED 3 0 2
KCNN4 WILD-TYPE 179 133 70
'KCNN4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.23 (Fisher's exact test), Q value = 0.55

Table S15804.  Gene #1496: 'KCNN4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
KCNN4 MUTATED 1 3 2 1
KCNN4 WILD-TYPE 111 93 90 185
'KCNN4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0408 (Fisher's exact test), Q value = 0.21

Table S15805.  Gene #1496: 'KCNN4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
KCNN4 MUTATED 0 3 0 1 2 1 0
KCNN4 WILD-TYPE 60 47 49 39 61 124 99

Figure S4041.  Get High-res Image Gene #1496: 'KCNN4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'KCNN4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0721 (Fisher's exact test), Q value = 0.29

Table S15806.  Gene #1496: 'KCNN4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
KCNN4 MUTATED 5 1 0 1
KCNN4 WILD-TYPE 125 77 68 195
'KCNN4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00054 (Fisher's exact test), Q value = 0.016

Table S15807.  Gene #1496: 'KCNN4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
KCNN4 MUTATED 4 0 2 1 0 0 0 0 0
KCNN4 WILD-TYPE 36 62 26 79 69 48 43 28 74

Figure S4042.  Get High-res Image Gene #1496: 'KCNN4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'C20ORF177 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00808 (Fisher's exact test), Q value = 0.084

Table S15808.  Gene #1497: 'C20ORF177 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
C20ORF177 MUTATED 0 0 0 3
C20ORF177 WILD-TYPE 46 58 64 40

Figure S4043.  Get High-res Image Gene #1497: 'C20ORF177 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'C20ORF177 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.347 (Fisher's exact test), Q value = 0.68

Table S15809.  Gene #1497: 'C20ORF177 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
C20ORF177 MUTATED 1 0 2
C20ORF177 WILD-TYPE 50 83 75
'C20ORF177 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.179 (Fisher's exact test), Q value = 0.48

Table S15810.  Gene #1497: 'C20ORF177 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
C20ORF177 MUTATED 8 3 1 1
C20ORF177 WILD-TYPE 170 180 100 19
'C20ORF177 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.126 (Fisher's exact test), Q value = 0.39

Table S15811.  Gene #1497: 'C20ORF177 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
C20ORF177 MUTATED 6 1 2
C20ORF177 WILD-TYPE 81 79 98
'C20ORF177 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0425 (Fisher's exact test), Q value = 0.22

Table S15812.  Gene #1497: 'C20ORF177 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
C20ORF177 MUTATED 0 4 8
C20ORF177 WILD-TYPE 89 156 130

Figure S4044.  Get High-res Image Gene #1497: 'C20ORF177 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'C20ORF177 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.194 (Fisher's exact test), Q value = 0.5

Table S15813.  Gene #1497: 'C20ORF177 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
C20ORF177 MUTATED 8 4 0
C20ORF177 WILD-TYPE 174 129 72
'C20ORF177 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.113 (Fisher's exact test), Q value = 0.37

Table S15814.  Gene #1497: 'C20ORF177 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
C20ORF177 MUTATED 1 2 6 4
C20ORF177 WILD-TYPE 111 94 86 182
'C20ORF177 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.139 (Fisher's exact test), Q value = 0.42

Table S15815.  Gene #1497: 'C20ORF177 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
C20ORF177 MUTATED 3 1 2 1 3 0 3
C20ORF177 WILD-TYPE 57 49 47 39 60 125 96
'C20ORF177 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.375 (Fisher's exact test), Q value = 0.7

Table S15816.  Gene #1497: 'C20ORF177 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
C20ORF177 MUTATED 3 4 2 3
C20ORF177 WILD-TYPE 127 74 66 193
'C20ORF177 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0331 (Fisher's exact test), Q value = 0.19

Table S15817.  Gene #1497: 'C20ORF177 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
C20ORF177 MUTATED 0 5 2 1 3 0 1 0 0
C20ORF177 WILD-TYPE 40 57 26 79 66 48 42 28 74

Figure S4045.  Get High-res Image Gene #1497: 'C20ORF177 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'C20ORF177 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.724 (Fisher's exact test), Q value = 0.99

Table S15818.  Gene #1497: 'C20ORF177 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
C20ORF177 MUTATED 2 1 1 2
C20ORF177 WILD-TYPE 31 30 26 17
'C20ORF177 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.788 (Fisher's exact test), Q value = 1

Table S15819.  Gene #1497: 'C20ORF177 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
C20ORF177 MUTATED 3 1 1 1
C20ORF177 WILD-TYPE 51 9 23 21
'RBL1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.309 (Fisher's exact test), Q value = 0.64

Table S15820.  Gene #1498: 'RBL1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
RBL1 MUTATED 1 1 0 2
RBL1 WILD-TYPE 45 57 64 41
'RBL1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.557 (Fisher's exact test), Q value = 0.87

Table S15821.  Gene #1498: 'RBL1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
RBL1 MUTATED 2 1 1
RBL1 WILD-TYPE 49 82 76
'RBL1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0684 (Fisher's exact test), Q value = 0.28

Table S15822.  Gene #1498: 'RBL1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
RBL1 MUTATED 12 5 1 1
RBL1 WILD-TYPE 166 178 100 19
'RBL1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.422 (Fisher's exact test), Q value = 0.75

Table S15823.  Gene #1498: 'RBL1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
RBL1 MUTATED 3 4 8
RBL1 WILD-TYPE 84 76 92
'RBL1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.206 (Fisher's exact test), Q value = 0.51

Table S15824.  Gene #1498: 'RBL1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
RBL1 MUTATED 1 9 7
RBL1 WILD-TYPE 88 151 131
'RBL1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0308 (Fisher's exact test), Q value = 0.18

Table S15825.  Gene #1498: 'RBL1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
RBL1 MUTATED 7 10 0
RBL1 WILD-TYPE 175 123 72

Figure S4046.  Get High-res Image Gene #1498: 'RBL1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'RBL1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0482 (Fisher's exact test), Q value = 0.23

Table S15826.  Gene #1498: 'RBL1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
RBL1 MUTATED 2 8 5 4
RBL1 WILD-TYPE 110 88 87 182

Figure S4047.  Get High-res Image Gene #1498: 'RBL1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'RBL1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0182 (Fisher's exact test), Q value = 0.13

Table S15827.  Gene #1498: 'RBL1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
RBL1 MUTATED 4 4 3 1 4 0 3
RBL1 WILD-TYPE 56 46 46 39 59 125 96

Figure S4048.  Get High-res Image Gene #1498: 'RBL1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'RBL1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.972 (Fisher's exact test), Q value = 1

Table S15828.  Gene #1498: 'RBL1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
RBL1 MUTATED 6 3 2 7
RBL1 WILD-TYPE 124 75 66 189
'RBL1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0603 (Fisher's exact test), Q value = 0.27

Table S15829.  Gene #1498: 'RBL1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
RBL1 MUTATED 3 3 1 1 7 0 2 0 1
RBL1 WILD-TYPE 37 59 27 79 62 48 41 28 73
'RBM15B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00161 (Fisher's exact test), Q value = 0.033

Table S15830.  Gene #1499: 'RBM15B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
RBM15B MUTATED 9 0 0 0
RBM15B WILD-TYPE 169 183 101 20

Figure S4049.  Get High-res Image Gene #1499: 'RBM15B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'RBM15B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.127 (Fisher's exact test), Q value = 0.4

Table S15831.  Gene #1499: 'RBM15B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
RBM15B MUTATED 2 0 5
RBM15B WILD-TYPE 85 80 95
'RBM15B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.135 (Fisher's exact test), Q value = 0.41

Table S15832.  Gene #1499: 'RBM15B MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
RBM15B MUTATED 3 1 5
RBM15B WILD-TYPE 86 159 133
'RBM15B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.326 (Fisher's exact test), Q value = 0.66

Table S15833.  Gene #1499: 'RBM15B MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
RBM15B MUTATED 6 1 2
RBM15B WILD-TYPE 176 132 70
'RBM15B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.26 (Fisher's exact test), Q value = 0.58

Table S15834.  Gene #1499: 'RBM15B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
RBM15B MUTATED 1 4 2 2
RBM15B WILD-TYPE 111 92 90 184
'RBM15B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00999 (Fisher's exact test), Q value = 0.095

Table S15835.  Gene #1499: 'RBM15B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
RBM15B MUTATED 1 0 5 0 0 1 2
RBM15B WILD-TYPE 59 50 44 40 63 124 97

Figure S4050.  Get High-res Image Gene #1499: 'RBM15B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'RBM15B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S15836.  Gene #1499: 'RBM15B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
RBM15B MUTATED 2 1 1 4
RBM15B WILD-TYPE 128 77 67 192
'RBM15B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0276 (Fisher's exact test), Q value = 0.17

Table S15837.  Gene #1499: 'RBM15B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
RBM15B MUTATED 0 2 0 0 5 0 1 0 0
RBM15B WILD-TYPE 40 60 28 80 64 48 42 28 74

Figure S4051.  Get High-res Image Gene #1499: 'RBM15B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'RBM15B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.024 (Fisher's exact test), Q value = 0.16

Table S15838.  Gene #1499: 'RBM15B MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
RBM15B MUTATED 1 0 0 3
RBM15B WILD-TYPE 32 31 27 16

Figure S4052.  Get High-res Image Gene #1499: 'RBM15B MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'RBM15B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.868 (Fisher's exact test), Q value = 1

Table S15839.  Gene #1499: 'RBM15B MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
RBM15B MUTATED 3 0 1 0
RBM15B WILD-TYPE 51 10 23 22
'PCDH19 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0158 (Fisher's exact test), Q value = 0.12

Table S15840.  Gene #1500: 'PCDH19 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
PCDH19 MUTATED 4 1 0 4
PCDH19 WILD-TYPE 42 57 64 39

Figure S4053.  Get High-res Image Gene #1500: 'PCDH19 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'PCDH19 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.34 (Fisher's exact test), Q value = 0.67

Table S15841.  Gene #1500: 'PCDH19 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
PCDH19 MUTATED 4 2 3
PCDH19 WILD-TYPE 47 81 74
'PCDH19 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.021 (Fisher's exact test), Q value = 0.15

Table S15842.  Gene #1500: 'PCDH19 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
PCDH19 MUTATED 15 4 2 1
PCDH19 WILD-TYPE 163 179 99 19

Figure S4054.  Get High-res Image Gene #1500: 'PCDH19 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'PCDH19 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0249 (Fisher's exact test), Q value = 0.16

Table S15843.  Gene #1500: 'PCDH19 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
PCDH19 MUTATED 7 0 6
PCDH19 WILD-TYPE 80 80 94

Figure S4055.  Get High-res Image Gene #1500: 'PCDH19 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'PCDH19 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0425 (Fisher's exact test), Q value = 0.22

Table S15844.  Gene #1500: 'PCDH19 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
PCDH19 MUTATED 4 3 11
PCDH19 WILD-TYPE 85 157 127

Figure S4056.  Get High-res Image Gene #1500: 'PCDH19 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'PCDH19 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.773 (Fisher's exact test), Q value = 1

Table S15845.  Gene #1500: 'PCDH19 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
PCDH19 MUTATED 9 7 2
PCDH19 WILD-TYPE 173 126 70
'PCDH19 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0655 (Fisher's exact test), Q value = 0.28

Table S15846.  Gene #1500: 'PCDH19 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
PCDH19 MUTATED 1 8 4 9
PCDH19 WILD-TYPE 111 88 88 177
'PCDH19 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0322 (Fisher's exact test), Q value = 0.18

Table S15847.  Gene #1500: 'PCDH19 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
PCDH19 MUTATED 1 1 6 4 1 3 6
PCDH19 WILD-TYPE 59 49 43 36 62 122 93

Figure S4057.  Get High-res Image Gene #1500: 'PCDH19 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'PCDH19 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.12 (Fisher's exact test), Q value = 0.39

Table S15848.  Gene #1500: 'PCDH19 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
PCDH19 MUTATED 5 3 0 13
PCDH19 WILD-TYPE 125 75 68 183
'PCDH19 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0194 (Fisher's exact test), Q value = 0.14

Table S15849.  Gene #1500: 'PCDH19 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
PCDH19 MUTATED 0 3 1 1 10 1 2 1 2
PCDH19 WILD-TYPE 40 59 27 79 59 47 41 27 72

Figure S4058.  Get High-res Image Gene #1500: 'PCDH19 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'PCDH19 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.595 (Fisher's exact test), Q value = 0.9

Table S15850.  Gene #1500: 'PCDH19 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
PCDH19 MUTATED 1 1 2 2
PCDH19 WILD-TYPE 32 30 25 17
'PCDH19 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.393 (Fisher's exact test), Q value = 0.72

Table S15851.  Gene #1500: 'PCDH19 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
PCDH19 MUTATED 3 1 2 0
PCDH19 WILD-TYPE 51 9 22 22
'MOV10L1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0322 (Fisher's exact test), Q value = 0.18

Table S15852.  Gene #1501: 'MOV10L1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
MOV10L1 MUTATED 4 1 0 3
MOV10L1 WILD-TYPE 42 57 64 40

Figure S4059.  Get High-res Image Gene #1501: 'MOV10L1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'MOV10L1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0481 (Fisher's exact test), Q value = 0.23

Table S15853.  Gene #1501: 'MOV10L1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
MOV10L1 MUTATED 5 1 2
MOV10L1 WILD-TYPE 46 82 75

Figure S4060.  Get High-res Image Gene #1501: 'MOV10L1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'MOV10L1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.166 (Fisher's exact test), Q value = 0.46

Table S15854.  Gene #1501: 'MOV10L1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
MOV10L1 MUTATED 11 4 2 0
MOV10L1 WILD-TYPE 167 179 99 20
'MOV10L1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.61 (Fisher's exact test), Q value = 0.91

Table S15855.  Gene #1501: 'MOV10L1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
MOV10L1 MUTATED 2 3 5
MOV10L1 WILD-TYPE 85 77 95
'MOV10L1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0243 (Fisher's exact test), Q value = 0.16

Table S15856.  Gene #1501: 'MOV10L1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
MOV10L1 MUTATED 0 5 9
MOV10L1 WILD-TYPE 89 155 129

Figure S4061.  Get High-res Image Gene #1501: 'MOV10L1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'MOV10L1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.879 (Fisher's exact test), Q value = 1

Table S15857.  Gene #1501: 'MOV10L1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
MOV10L1 MUTATED 7 4 3
MOV10L1 WILD-TYPE 175 129 69
'MOV10L1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.763 (Fisher's exact test), Q value = 1

Table S15858.  Gene #1501: 'MOV10L1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
MOV10L1 MUTATED 3 2 4 8
MOV10L1 WILD-TYPE 109 94 88 178
'MOV10L1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0236 (Fisher's exact test), Q value = 0.16

Table S15859.  Gene #1501: 'MOV10L1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
MOV10L1 MUTATED 4 3 3 0 0 1 6
MOV10L1 WILD-TYPE 56 47 46 40 63 124 93

Figure S4062.  Get High-res Image Gene #1501: 'MOV10L1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'MOV10L1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0405 (Fisher's exact test), Q value = 0.21

Table S15860.  Gene #1501: 'MOV10L1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
MOV10L1 MUTATED 9 0 1 6
MOV10L1 WILD-TYPE 121 78 67 190

Figure S4063.  Get High-res Image Gene #1501: 'MOV10L1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'MOV10L1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0376 (Fisher's exact test), Q value = 0.2

Table S15861.  Gene #1501: 'MOV10L1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
MOV10L1 MUTATED 4 1 3 2 4 0 0 1 1
MOV10L1 WILD-TYPE 36 61 25 78 65 48 43 27 73

Figure S4064.  Get High-res Image Gene #1501: 'MOV10L1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'FAF2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.122 (Fisher's exact test), Q value = 0.39

Table S15862.  Gene #1502: 'FAF2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
FAF2 MUTATED 2 0 0 1
FAF2 WILD-TYPE 44 58 64 42
'FAF2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0135 (Fisher's exact test), Q value = 0.11

Table S15863.  Gene #1502: 'FAF2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
FAF2 MUTATED 3 0 0
FAF2 WILD-TYPE 48 83 77

Figure S4065.  Get High-res Image Gene #1502: 'FAF2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'FAF2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.165 (Fisher's exact test), Q value = 0.46

Table S15864.  Gene #1502: 'FAF2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
FAF2 MUTATED 6 2 0 0
FAF2 WILD-TYPE 172 181 101 20
'FAF2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.327 (Fisher's exact test), Q value = 0.66

Table S15865.  Gene #1502: 'FAF2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
FAF2 MUTATED 3 0 2
FAF2 WILD-TYPE 84 80 98
'FAF2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.817 (Fisher's exact test), Q value = 1

Table S15866.  Gene #1502: 'FAF2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
FAF2 MUTATED 2 4 2
FAF2 WILD-TYPE 87 156 136
'FAF2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.372 (Fisher's exact test), Q value = 0.7

Table S15867.  Gene #1502: 'FAF2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
FAF2 MUTATED 3 2 3
FAF2 WILD-TYPE 179 131 69
'FAF2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.926 (Fisher's exact test), Q value = 1

Table S15868.  Gene #1502: 'FAF2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
FAF2 MUTATED 2 1 2 3
FAF2 WILD-TYPE 110 95 90 183
'FAF2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.231 (Fisher's exact test), Q value = 0.55

Table S15869.  Gene #1502: 'FAF2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
FAF2 MUTATED 0 1 1 1 2 0 3
FAF2 WILD-TYPE 60 49 48 39 61 125 96
'FAF2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.914 (Fisher's exact test), Q value = 1

Table S15870.  Gene #1502: 'FAF2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
FAF2 MUTATED 2 2 1 3
FAF2 WILD-TYPE 128 76 67 193
'FAF2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.595 (Fisher's exact test), Q value = 0.9

Table S15871.  Gene #1502: 'FAF2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
FAF2 MUTATED 1 2 0 1 3 1 0 0 0
FAF2 WILD-TYPE 39 60 28 79 66 47 43 28 74
'FAF2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.304 (Fisher's exact test), Q value = 0.63

Table S15872.  Gene #1502: 'FAF2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
FAF2 MUTATED 0 1 2 0
FAF2 WILD-TYPE 33 30 25 19
'FAF2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.692 (Fisher's exact test), Q value = 0.97

Table S15873.  Gene #1502: 'FAF2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
FAF2 MUTATED 1 0 1 1
FAF2 WILD-TYPE 53 10 23 21
'RBM15 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0056 (Fisher's exact test), Q value = 0.068

Table S15874.  Gene #1503: 'RBM15 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
RBM15 MUTATED 2 0 0 4
RBM15 WILD-TYPE 44 58 64 39

Figure S4066.  Get High-res Image Gene #1503: 'RBM15 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'RBM15 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.244 (Fisher's exact test), Q value = 0.57

Table S15875.  Gene #1503: 'RBM15 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
RBM15 MUTATED 3 1 2
RBM15 WILD-TYPE 48 82 75
'RBM15 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00789 (Fisher's exact test), Q value = 0.083

Table S15876.  Gene #1503: 'RBM15 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
RBM15 MUTATED 15 4 1 0
RBM15 WILD-TYPE 163 179 100 20

Figure S4067.  Get High-res Image Gene #1503: 'RBM15 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'RBM15 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.182 (Fisher's exact test), Q value = 0.48

Table S15877.  Gene #1503: 'RBM15 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
RBM15 MUTATED 8 3 3
RBM15 WILD-TYPE 79 77 97
'RBM15 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.112 (Fisher's exact test), Q value = 0.37

Table S15878.  Gene #1503: 'RBM15 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
RBM15 MUTATED 1 5 9
RBM15 WILD-TYPE 88 155 129
'RBM15 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.94 (Fisher's exact test), Q value = 1

Table S15879.  Gene #1503: 'RBM15 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
RBM15 MUTATED 8 5 2
RBM15 WILD-TYPE 174 128 70
'RBM15 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.473 (Fisher's exact test), Q value = 0.8

Table S15880.  Gene #1503: 'RBM15 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
RBM15 MUTATED 3 6 5 6
RBM15 WILD-TYPE 109 90 87 180
'RBM15 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00253 (Fisher's exact test), Q value = 0.044

Table S15881.  Gene #1503: 'RBM15 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
RBM15 MUTATED 3 2 7 1 2 0 5
RBM15 WILD-TYPE 57 48 42 39 61 125 94

Figure S4068.  Get High-res Image Gene #1503: 'RBM15 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'RBM15 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.687 (Fisher's exact test), Q value = 0.97

Table S15882.  Gene #1503: 'RBM15 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
RBM15 MUTATED 8 3 2 7
RBM15 WILD-TYPE 122 75 66 189
'RBM15 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00087 (Fisher's exact test), Q value = 0.022

Table S15883.  Gene #1503: 'RBM15 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
RBM15 MUTATED 2 6 3 0 6 0 1 2 0
RBM15 WILD-TYPE 38 56 25 80 63 48 42 26 74

Figure S4069.  Get High-res Image Gene #1503: 'RBM15 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'RBM15 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.627 (Fisher's exact test), Q value = 0.92

Table S15884.  Gene #1503: 'RBM15 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
RBM15 MUTATED 0 1 1 1
RBM15 WILD-TYPE 33 30 26 18
'RBM15 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.309 (Fisher's exact test), Q value = 0.64

Table S15885.  Gene #1503: 'RBM15 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
RBM15 MUTATED 1 1 1 0
RBM15 WILD-TYPE 53 9 23 22
'C5ORF42 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0577 (Fisher's exact test), Q value = 0.26

Table S15886.  Gene #1504: 'C5ORF42 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
C5ORF42 MUTATED 6 1 2 4
C5ORF42 WILD-TYPE 40 57 62 39
'C5ORF42 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.161 (Fisher's exact test), Q value = 0.45

Table S15887.  Gene #1504: 'C5ORF42 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
C5ORF42 MUTATED 6 3 4
C5ORF42 WILD-TYPE 45 80 73
'C5ORF42 MUTATION STATUS' versus 'CN_CNMF'

P value = 4e-05 (Fisher's exact test), Q value = 0.0027

Table S15888.  Gene #1504: 'C5ORF42 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
C5ORF42 MUTATED 30 7 3 1
C5ORF42 WILD-TYPE 148 176 98 19

Figure S4070.  Get High-res Image Gene #1504: 'C5ORF42 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'C5ORF42 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00752 (Fisher's exact test), Q value = 0.081

Table S15889.  Gene #1504: 'C5ORF42 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
C5ORF42 MUTATED 16 3 9
C5ORF42 WILD-TYPE 71 77 91

Figure S4071.  Get High-res Image Gene #1504: 'C5ORF42 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'C5ORF42 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0118 (Fisher's exact test), Q value = 0.11

Table S15890.  Gene #1504: 'C5ORF42 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
C5ORF42 MUTATED 5 8 20
C5ORF42 WILD-TYPE 84 152 118

Figure S4072.  Get High-res Image Gene #1504: 'C5ORF42 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'C5ORF42 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0333 (Fisher's exact test), Q value = 0.19

Table S15891.  Gene #1504: 'C5ORF42 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
C5ORF42 MUTATED 19 5 9
C5ORF42 WILD-TYPE 163 128 63

Figure S4073.  Get High-res Image Gene #1504: 'C5ORF42 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'C5ORF42 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0792 (Fisher's exact test), Q value = 0.3

Table S15892.  Gene #1504: 'C5ORF42 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
C5ORF42 MUTATED 5 13 10 13
C5ORF42 WILD-TYPE 107 83 82 173
'C5ORF42 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00195 (Fisher's exact test), Q value = 0.037

Table S15893.  Gene #1504: 'C5ORF42 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
C5ORF42 MUTATED 4 4 11 7 3 4 8
C5ORF42 WILD-TYPE 56 46 38 33 60 121 91

Figure S4074.  Get High-res Image Gene #1504: 'C5ORF42 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'C5ORF42 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.792 (Fisher's exact test), Q value = 1

Table S15894.  Gene #1504: 'C5ORF42 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
C5ORF42 MUTATED 12 8 6 14
C5ORF42 WILD-TYPE 118 70 62 182
'C5ORF42 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.109 (Fisher's exact test), Q value = 0.37

Table S15895.  Gene #1504: 'C5ORF42 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
C5ORF42 MUTATED 3 7 1 7 10 2 7 1 2
C5ORF42 WILD-TYPE 37 55 27 73 59 46 36 27 72
'C5ORF42 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.436 (Fisher's exact test), Q value = 0.76

Table S15896.  Gene #1504: 'C5ORF42 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
C5ORF42 MUTATED 4 3 4 5
C5ORF42 WILD-TYPE 29 28 23 14
'C5ORF42 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.659 (Fisher's exact test), Q value = 0.95

Table S15897.  Gene #1504: 'C5ORF42 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
C5ORF42 MUTATED 8 0 4 4
C5ORF42 WILD-TYPE 46 10 20 18
'BTBD3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0493 (Fisher's exact test), Q value = 0.24

Table S15898.  Gene #1505: 'BTBD3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
BTBD3 MUTATED 9 1 3 0
BTBD3 WILD-TYPE 169 182 98 20

Figure S4075.  Get High-res Image Gene #1505: 'BTBD3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'BTBD3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.508 (Fisher's exact test), Q value = 0.83

Table S15899.  Gene #1505: 'BTBD3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
BTBD3 MUTATED 3 2 6
BTBD3 WILD-TYPE 84 78 94
'BTBD3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.199 (Fisher's exact test), Q value = 0.5

Table S15900.  Gene #1505: 'BTBD3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
BTBD3 MUTATED 1 3 7
BTBD3 WILD-TYPE 88 157 131
'BTBD3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.283 (Fisher's exact test), Q value = 0.61

Table S15901.  Gene #1505: 'BTBD3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
BTBD3 MUTATED 6 5 0
BTBD3 WILD-TYPE 176 128 72
'BTBD3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.014 (Fisher's exact test), Q value = 0.12

Table S15902.  Gene #1505: 'BTBD3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
BTBD3 MUTATED 1 7 3 2
BTBD3 WILD-TYPE 111 89 89 184

Figure S4076.  Get High-res Image Gene #1505: 'BTBD3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'BTBD3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00037 (Fisher's exact test), Q value = 0.013

Table S15903.  Gene #1505: 'BTBD3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
BTBD3 MUTATED 0 4 4 3 0 0 2
BTBD3 WILD-TYPE 60 46 45 37 63 125 97

Figure S4077.  Get High-res Image Gene #1505: 'BTBD3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'BTBD3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00548 (Fisher's exact test), Q value = 0.067

Table S15904.  Gene #1505: 'BTBD3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
BTBD3 MUTATED 9 0 1 2
BTBD3 WILD-TYPE 121 78 67 194

Figure S4078.  Get High-res Image Gene #1505: 'BTBD3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'BTBD3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.563 (Fisher's exact test), Q value = 0.87

Table S15905.  Gene #1505: 'BTBD3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
BTBD3 MUTATED 2 2 1 1 4 1 0 0 1
BTBD3 WILD-TYPE 38 60 27 79 65 47 43 28 73
'NOVA1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.104 (Fisher's exact test), Q value = 0.36

Table S15906.  Gene #1506: 'NOVA1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
NOVA1 MUTATED 3 1 0 2
NOVA1 WILD-TYPE 43 57 64 41
'NOVA1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.655 (Fisher's exact test), Q value = 0.94

Table S15907.  Gene #1506: 'NOVA1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
NOVA1 MUTATED 2 3 1
NOVA1 WILD-TYPE 49 80 76
'NOVA1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0932 (Fisher's exact test), Q value = 0.33

Table S15908.  Gene #1506: 'NOVA1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
NOVA1 MUTATED 12 4 2 1
NOVA1 WILD-TYPE 166 179 99 19
'NOVA1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.568 (Fisher's exact test), Q value = 0.88

Table S15909.  Gene #1506: 'NOVA1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
NOVA1 MUTATED 3 5 7
NOVA1 WILD-TYPE 84 75 93
'NOVA1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.904 (Fisher's exact test), Q value = 1

Table S15910.  Gene #1506: 'NOVA1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
NOVA1 MUTATED 3 7 7
NOVA1 WILD-TYPE 86 153 131
'NOVA1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S15911.  Gene #1506: 'NOVA1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
NOVA1 MUTATED 8 6 3
NOVA1 WILD-TYPE 174 127 69
'NOVA1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.103 (Fisher's exact test), Q value = 0.36

Table S15912.  Gene #1506: 'NOVA1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
NOVA1 MUTATED 6 2 7 4
NOVA1 WILD-TYPE 106 94 85 182
'NOVA1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0406 (Fisher's exact test), Q value = 0.21

Table S15913.  Gene #1506: 'NOVA1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
NOVA1 MUTATED 3 1 6 0 4 2 3
NOVA1 WILD-TYPE 57 49 43 40 59 123 96

Figure S4079.  Get High-res Image Gene #1506: 'NOVA1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'NOVA1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.878 (Fisher's exact test), Q value = 1

Table S15914.  Gene #1506: 'NOVA1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
NOVA1 MUTATED 6 4 2 7
NOVA1 WILD-TYPE 124 74 66 189
'NOVA1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0447 (Fisher's exact test), Q value = 0.23

Table S15915.  Gene #1506: 'NOVA1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
NOVA1 MUTATED 0 5 2 3 5 0 2 2 0
NOVA1 WILD-TYPE 40 57 26 77 64 48 41 26 74

Figure S4080.  Get High-res Image Gene #1506: 'NOVA1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'NOVA1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.41 (Fisher's exact test), Q value = 0.74

Table S15916.  Gene #1506: 'NOVA1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
NOVA1 MUTATED 1 2 2 3
NOVA1 WILD-TYPE 32 29 25 16
'NOVA1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.731 (Fisher's exact test), Q value = 1

Table S15917.  Gene #1506: 'NOVA1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
NOVA1 MUTATED 3 1 2 2
NOVA1 WILD-TYPE 51 9 22 20
'SBSN MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00381 (Fisher's exact test), Q value = 0.056

Table S15918.  Gene #1507: 'SBSN MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
SBSN MUTATED 4 0 0 0
SBSN WILD-TYPE 42 58 64 43

Figure S4081.  Get High-res Image Gene #1507: 'SBSN MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'SBSN MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00306 (Fisher's exact test), Q value = 0.049

Table S15919.  Gene #1507: 'SBSN MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
SBSN MUTATED 4 0 0
SBSN WILD-TYPE 47 83 77

Figure S4082.  Get High-res Image Gene #1507: 'SBSN MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'SBSN MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0128 (Fisher's exact test), Q value = 0.11

Table S15920.  Gene #1507: 'SBSN MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
SBSN MUTATED 8 1 0 1
SBSN WILD-TYPE 170 182 101 19

Figure S4083.  Get High-res Image Gene #1507: 'SBSN MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'SBSN MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0659 (Fisher's exact test), Q value = 0.28

Table S15921.  Gene #1507: 'SBSN MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
SBSN MUTATED 1 0 5
SBSN WILD-TYPE 86 80 95
'SBSN MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.382 (Fisher's exact test), Q value = 0.71

Table S15922.  Gene #1507: 'SBSN MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
SBSN MUTATED 1 2 5
SBSN WILD-TYPE 88 158 133
'SBSN MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S15923.  Gene #1507: 'SBSN MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
SBSN MUTATED 4 3 1
SBSN WILD-TYPE 178 130 71
'SBSN MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.724 (Fisher's exact test), Q value = 0.99

Table S15924.  Gene #1507: 'SBSN MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
SBSN MUTATED 1 3 2 4
SBSN WILD-TYPE 111 93 90 182
'SBSN MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0177 (Fisher's exact test), Q value = 0.13

Table S15925.  Gene #1507: 'SBSN MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
SBSN MUTATED 0 2 3 1 0 0 4
SBSN WILD-TYPE 60 48 46 39 63 125 95

Figure S4084.  Get High-res Image Gene #1507: 'SBSN MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'SBSN MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.205 (Fisher's exact test), Q value = 0.51

Table S15926.  Gene #1507: 'SBSN MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
SBSN MUTATED 5 1 0 2
SBSN WILD-TYPE 125 77 68 194
'SBSN MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.545 (Fisher's exact test), Q value = 0.86

Table S15927.  Gene #1507: 'SBSN MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
SBSN MUTATED 1 2 0 1 3 0 1 0 0
SBSN WILD-TYPE 39 60 28 79 66 48 42 28 74
'SBSN MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.628 (Fisher's exact test), Q value = 0.92

Table S15928.  Gene #1507: 'SBSN MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
SBSN MUTATED 0 1 1 1
SBSN WILD-TYPE 33 30 26 18
'SBSN MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S15929.  Gene #1507: 'SBSN MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
SBSN MUTATED 2 0 1 0
SBSN WILD-TYPE 52 10 23 22
'OR8B12 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.865 (Fisher's exact test), Q value = 1

Table S15930.  Gene #1508: 'OR8B12 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
OR8B12 MUTATED 2 1 1 0
OR8B12 WILD-TYPE 176 182 100 20
'OR8B12 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S15931.  Gene #1508: 'OR8B12 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
OR8B12 MUTATED 1 1 1
OR8B12 WILD-TYPE 86 79 99
'OR8B12 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.83 (Fisher's exact test), Q value = 1

Table S15932.  Gene #1508: 'OR8B12 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
OR8B12 MUTATED 1 1 2
OR8B12 WILD-TYPE 88 159 136
'OR8B12 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.528 (Fisher's exact test), Q value = 0.85

Table S15933.  Gene #1508: 'OR8B12 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
OR8B12 MUTATED 1 2 1
OR8B12 WILD-TYPE 181 131 71
'OR8B12 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.918 (Fisher's exact test), Q value = 1

Table S15934.  Gene #1508: 'OR8B12 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
OR8B12 MUTATED 1 1 1 1
OR8B12 WILD-TYPE 111 95 91 185
'OR8B12 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.511 (Fisher's exact test), Q value = 0.83

Table S15935.  Gene #1508: 'OR8B12 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
OR8B12 MUTATED 1 1 0 0 1 0 1
OR8B12 WILD-TYPE 59 49 49 40 62 125 98
'OR8B12 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.906 (Fisher's exact test), Q value = 1

Table S15936.  Gene #1508: 'OR8B12 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
OR8B12 MUTATED 1 0 1 2
OR8B12 WILD-TYPE 129 78 67 194
'OR8B12 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.486 (Fisher's exact test), Q value = 0.81

Table S15937.  Gene #1508: 'OR8B12 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
OR8B12 MUTATED 0 0 1 0 1 0 1 0 1
OR8B12 WILD-TYPE 40 62 27 80 68 48 42 28 73
'AGXT2L1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0589 (Fisher's exact test), Q value = 0.27

Table S15938.  Gene #1509: 'AGXT2L1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
AGXT2L1 MUTATED 4 0 1 1
AGXT2L1 WILD-TYPE 42 58 63 42
'AGXT2L1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.242 (Fisher's exact test), Q value = 0.57

Table S15939.  Gene #1509: 'AGXT2L1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
AGXT2L1 MUTATED 3 1 2
AGXT2L1 WILD-TYPE 48 82 75
'AGXT2L1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0233 (Fisher's exact test), Q value = 0.16

Table S15940.  Gene #1509: 'AGXT2L1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
AGXT2L1 MUTATED 10 1 2 0
AGXT2L1 WILD-TYPE 168 182 99 20

Figure S4085.  Get High-res Image Gene #1509: 'AGXT2L1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'AGXT2L1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.069 (Fisher's exact test), Q value = 0.28

Table S15941.  Gene #1509: 'AGXT2L1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
AGXT2L1 MUTATED 5 0 2
AGXT2L1 WILD-TYPE 82 80 98
'AGXT2L1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.205 (Fisher's exact test), Q value = 0.51

Table S15942.  Gene #1509: 'AGXT2L1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
AGXT2L1 MUTATED 0 5 5
AGXT2L1 WILD-TYPE 89 155 133
'AGXT2L1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S15943.  Gene #1509: 'AGXT2L1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
AGXT2L1 MUTATED 5 3 2
AGXT2L1 WILD-TYPE 177 130 70
'AGXT2L1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.035 (Fisher's exact test), Q value = 0.19

Table S15944.  Gene #1509: 'AGXT2L1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
AGXT2L1 MUTATED 0 1 5 7
AGXT2L1 WILD-TYPE 112 95 87 179

Figure S4086.  Get High-res Image Gene #1509: 'AGXT2L1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'AGXT2L1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0595 (Fisher's exact test), Q value = 0.27

Table S15945.  Gene #1509: 'AGXT2L1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
AGXT2L1 MUTATED 1 0 5 0 1 2 4
AGXT2L1 WILD-TYPE 59 50 44 40 62 123 95
'AGXT2L1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.46 (Fisher's exact test), Q value = 0.79

Table S15946.  Gene #1509: 'AGXT2L1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
AGXT2L1 MUTATED 2 4 1 6
AGXT2L1 WILD-TYPE 128 74 67 190
'AGXT2L1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.385 (Fisher's exact test), Q value = 0.71

Table S15947.  Gene #1509: 'AGXT2L1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
AGXT2L1 MUTATED 2 4 0 1 3 0 0 1 2
AGXT2L1 WILD-TYPE 38 58 28 79 66 48 43 27 72
'JAK1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.12 (Fisher's exact test), Q value = 0.39

Table S15948.  Gene #1510: 'JAK1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
JAK1 MUTATED 2 0 0 1
JAK1 WILD-TYPE 44 58 64 42
'JAK1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.184 (Fisher's exact test), Q value = 0.48

Table S15949.  Gene #1510: 'JAK1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
JAK1 MUTATED 2 0 1
JAK1 WILD-TYPE 49 83 76
'JAK1 MUTATION STATUS' versus 'CN_CNMF'

P value = 6e-05 (Fisher's exact test), Q value = 0.0037

Table S15950.  Gene #1510: 'JAK1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
JAK1 MUTATED 16 0 3 1
JAK1 WILD-TYPE 162 183 98 19

Figure S4087.  Get High-res Image Gene #1510: 'JAK1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'JAK1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00553 (Fisher's exact test), Q value = 0.067

Table S15951.  Gene #1510: 'JAK1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
JAK1 MUTATED 9 0 7
JAK1 WILD-TYPE 78 80 93

Figure S4088.  Get High-res Image Gene #1510: 'JAK1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'JAK1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.061 (Fisher's exact test), Q value = 0.27

Table S15952.  Gene #1510: 'JAK1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
JAK1 MUTATED 2 3 10
JAK1 WILD-TYPE 87 157 128
'JAK1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.301 (Fisher's exact test), Q value = 0.63

Table S15953.  Gene #1510: 'JAK1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
JAK1 MUTATED 10 4 1
JAK1 WILD-TYPE 172 129 71
'JAK1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 4e-05 (Fisher's exact test), Q value = 0.0027

Table S15954.  Gene #1510: 'JAK1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
JAK1 MUTATED 0 6 11 3
JAK1 WILD-TYPE 112 90 81 183

Figure S4089.  Get High-res Image Gene #1510: 'JAK1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'JAK1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S15955.  Gene #1510: 'JAK1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
JAK1 MUTATED 2 0 14 0 2 0 2
JAK1 WILD-TYPE 58 50 35 40 61 125 97

Figure S4090.  Get High-res Image Gene #1510: 'JAK1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'JAK1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.019 (Fisher's exact test), Q value = 0.14

Table S15956.  Gene #1510: 'JAK1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
JAK1 MUTATED 9 6 0 5
JAK1 WILD-TYPE 121 72 68 191

Figure S4091.  Get High-res Image Gene #1510: 'JAK1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'JAK1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0189 (Fisher's exact test), Q value = 0.14

Table S15957.  Gene #1510: 'JAK1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
JAK1 MUTATED 3 5 0 2 7 0 2 1 0
JAK1 WILD-TYPE 37 57 28 78 62 48 41 27 74

Figure S4092.  Get High-res Image Gene #1510: 'JAK1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'JAK1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.307 (Fisher's exact test), Q value = 0.64

Table S15958.  Gene #1510: 'JAK1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
JAK1 MUTATED 3 1 0 2
JAK1 WILD-TYPE 30 30 27 17
'JAK1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.567 (Fisher's exact test), Q value = 0.87

Table S15959.  Gene #1510: 'JAK1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
JAK1 MUTATED 5 0 1 0
JAK1 WILD-TYPE 49 10 23 22
'CCDC110 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0227 (Fisher's exact test), Q value = 0.15

Table S15960.  Gene #1511: 'CCDC110 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
CCDC110 MUTATED 2 0 0 3
CCDC110 WILD-TYPE 44 58 64 40

Figure S4093.  Get High-res Image Gene #1511: 'CCDC110 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'CCDC110 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S15961.  Gene #1511: 'CCDC110 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
CCDC110 MUTATED 1 2 2
CCDC110 WILD-TYPE 50 81 75
'CCDC110 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00028 (Fisher's exact test), Q value = 0.01

Table S15962.  Gene #1511: 'CCDC110 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
CCDC110 MUTATED 13 0 1 0
CCDC110 WILD-TYPE 165 183 100 20

Figure S4094.  Get High-res Image Gene #1511: 'CCDC110 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'CCDC110 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.437 (Fisher's exact test), Q value = 0.76

Table S15963.  Gene #1511: 'CCDC110 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
CCDC110 MUTATED 3 1 5
CCDC110 WILD-TYPE 84 79 95
'CCDC110 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.327 (Fisher's exact test), Q value = 0.66

Table S15964.  Gene #1511: 'CCDC110 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
CCDC110 MUTATED 1 7 3
CCDC110 WILD-TYPE 88 153 135
'CCDC110 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.196 (Fisher's exact test), Q value = 0.5

Table S15965.  Gene #1511: 'CCDC110 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
CCDC110 MUTATED 5 6 0
CCDC110 WILD-TYPE 177 127 72
'CCDC110 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0587 (Fisher's exact test), Q value = 0.26

Table S15966.  Gene #1511: 'CCDC110 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
CCDC110 MUTATED 0 4 5 5
CCDC110 WILD-TYPE 112 92 87 181
'CCDC110 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00758 (Fisher's exact test), Q value = 0.081

Table S15967.  Gene #1511: 'CCDC110 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
CCDC110 MUTATED 1 0 6 0 2 1 4
CCDC110 WILD-TYPE 59 50 43 40 61 124 95

Figure S4095.  Get High-res Image Gene #1511: 'CCDC110 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CCDC110 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.489 (Fisher's exact test), Q value = 0.82

Table S15968.  Gene #1511: 'CCDC110 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
CCDC110 MUTATED 4 3 0 7
CCDC110 WILD-TYPE 126 75 68 189
'CCDC110 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.228 (Fisher's exact test), Q value = 0.55

Table S15969.  Gene #1511: 'CCDC110 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
CCDC110 MUTATED 1 4 1 2 5 0 0 0 1
CCDC110 WILD-TYPE 39 58 27 78 64 48 43 28 73
'CCDC110 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00453 (Fisher's exact test), Q value = 0.061

Table S15970.  Gene #1511: 'CCDC110 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
CCDC110 MUTATED 0 0 0 3
CCDC110 WILD-TYPE 33 31 27 16

Figure S4096.  Get High-res Image Gene #1511: 'CCDC110 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'CCDC110 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S15971.  Gene #1511: 'CCDC110 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
CCDC110 MUTATED 2 0 1 0
CCDC110 WILD-TYPE 52 10 23 22
'LMOD1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.122 (Fisher's exact test), Q value = 0.39

Table S15972.  Gene #1512: 'LMOD1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
LMOD1 MUTATED 2 0 0 1
LMOD1 WILD-TYPE 44 58 64 42
'LMOD1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.184 (Fisher's exact test), Q value = 0.48

Table S15973.  Gene #1512: 'LMOD1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
LMOD1 MUTATED 2 0 1
LMOD1 WILD-TYPE 49 83 76
'LMOD1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.122 (Fisher's exact test), Q value = 0.39

Table S15974.  Gene #1512: 'LMOD1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
LMOD1 MUTATED 9 2 2 0
LMOD1 WILD-TYPE 169 181 99 20
'LMOD1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S15975.  Gene #1512: 'LMOD1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
LMOD1 MUTATED 3 3 4
LMOD1 WILD-TYPE 84 77 96
'LMOD1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.164 (Fisher's exact test), Q value = 0.46

Table S15976.  Gene #1512: 'LMOD1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
LMOD1 MUTATED 1 4 8
LMOD1 WILD-TYPE 88 156 130
'LMOD1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S15977.  Gene #1512: 'LMOD1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
LMOD1 MUTATED 6 5 2
LMOD1 WILD-TYPE 176 128 70
'LMOD1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.63 (Fisher's exact test), Q value = 0.93

Table S15978.  Gene #1512: 'LMOD1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
LMOD1 MUTATED 2 3 4 4
LMOD1 WILD-TYPE 110 93 88 182
'LMOD1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0564 (Fisher's exact test), Q value = 0.26

Table S15979.  Gene #1512: 'LMOD1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
LMOD1 MUTATED 3 1 3 0 3 0 3
LMOD1 WILD-TYPE 57 49 46 40 60 125 96
'LMOD1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.491 (Fisher's exact test), Q value = 0.82

Table S15980.  Gene #1512: 'LMOD1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
LMOD1 MUTATED 4 3 0 6
LMOD1 WILD-TYPE 126 75 68 190
'LMOD1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.692 (Fisher's exact test), Q value = 0.97

Table S15981.  Gene #1512: 'LMOD1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
LMOD1 MUTATED 1 3 0 1 4 1 0 1 2
LMOD1 WILD-TYPE 39 59 28 79 65 47 43 27 72
'C2CD3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0992 (Fisher's exact test), Q value = 0.35

Table S15982.  Gene #1513: 'C2CD3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
C2CD3 MUTATED 2 1 0 3
C2CD3 WILD-TYPE 44 57 64 40
'C2CD3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.659 (Fisher's exact test), Q value = 0.95

Table S15983.  Gene #1513: 'C2CD3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
C2CD3 MUTATED 2 3 1
C2CD3 WILD-TYPE 49 80 76
'C2CD3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.055 (Fisher's exact test), Q value = 0.26

Table S15984.  Gene #1513: 'C2CD3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
C2CD3 MUTATED 11 2 4 0
C2CD3 WILD-TYPE 167 181 97 20
'C2CD3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.402 (Fisher's exact test), Q value = 0.73

Table S15985.  Gene #1513: 'C2CD3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
C2CD3 MUTATED 2 2 6
C2CD3 WILD-TYPE 85 78 94
'C2CD3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.655 (Fisher's exact test), Q value = 0.94

Table S15986.  Gene #1513: 'C2CD3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
C2CD3 MUTATED 2 4 6
C2CD3 WILD-TYPE 87 156 132
'C2CD3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.745 (Fisher's exact test), Q value = 1

Table S15987.  Gene #1513: 'C2CD3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
C2CD3 MUTATED 6 5 1
C2CD3 WILD-TYPE 176 128 71
'C2CD3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.11 (Fisher's exact test), Q value = 0.37

Table S15988.  Gene #1513: 'C2CD3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
C2CD3 MUTATED 2 7 1 7
C2CD3 WILD-TYPE 110 89 91 179
'C2CD3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.368 (Fisher's exact test), Q value = 0.7

Table S15989.  Gene #1513: 'C2CD3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
C2CD3 MUTATED 2 3 4 1 1 2 4
C2CD3 WILD-TYPE 58 47 45 39 62 123 95
'C2CD3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.181 (Fisher's exact test), Q value = 0.48

Table S15990.  Gene #1513: 'C2CD3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
C2CD3 MUTATED 7 0 3 7
C2CD3 WILD-TYPE 123 78 65 189
'C2CD3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.102 (Fisher's exact test), Q value = 0.35

Table S15991.  Gene #1513: 'C2CD3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
C2CD3 MUTATED 1 1 2 4 7 1 0 0 1
C2CD3 WILD-TYPE 39 61 26 76 62 47 43 28 73
'AFF1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0743 (Fisher's exact test), Q value = 0.29

Table S15992.  Gene #1514: 'AFF1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
AFF1 MUTATED 2 0 0 2
AFF1 WILD-TYPE 44 58 64 41
'AFF1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.179 (Fisher's exact test), Q value = 0.48

Table S15993.  Gene #1514: 'AFF1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
AFF1 MUTATED 2 0 2
AFF1 WILD-TYPE 49 83 75
'AFF1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0438 (Fisher's exact test), Q value = 0.22

Table S15994.  Gene #1514: 'AFF1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
AFF1 MUTATED 10 4 0 0
AFF1 WILD-TYPE 168 179 101 20

Figure S4097.  Get High-res Image Gene #1514: 'AFF1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'AFF1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.404 (Fisher's exact test), Q value = 0.73

Table S15995.  Gene #1514: 'AFF1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
AFF1 MUTATED 2 2 6
AFF1 WILD-TYPE 85 78 94
'AFF1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0734 (Fisher's exact test), Q value = 0.29

Table S15996.  Gene #1514: 'AFF1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
AFF1 MUTATED 0 4 7
AFF1 WILD-TYPE 89 156 131
'AFF1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0491 (Fisher's exact test), Q value = 0.24

Table S15997.  Gene #1514: 'AFF1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
AFF1 MUTATED 9 2 0
AFF1 WILD-TYPE 173 131 72

Figure S4098.  Get High-res Image Gene #1514: 'AFF1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'AFF1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.753 (Fisher's exact test), Q value = 1

Table S15998.  Gene #1514: 'AFF1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
AFF1 MUTATED 3 3 4 4
AFF1 WILD-TYPE 109 93 88 182
'AFF1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0103 (Fisher's exact test), Q value = 0.097

Table S15999.  Gene #1514: 'AFF1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
AFF1 MUTATED 3 0 4 0 2 0 5
AFF1 WILD-TYPE 57 50 45 40 61 125 94

Figure S4099.  Get High-res Image Gene #1514: 'AFF1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'AFF1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.861 (Fisher's exact test), Q value = 1

Table S16000.  Gene #1514: 'AFF1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
AFF1 MUTATED 4 3 1 5
AFF1 WILD-TYPE 126 75 67 191
'AFF1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0291 (Fisher's exact test), Q value = 0.17

Table S16001.  Gene #1514: 'AFF1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
AFF1 MUTATED 2 3 1 0 4 0 3 0 0
AFF1 WILD-TYPE 38 59 27 80 65 48 40 28 74

Figure S4100.  Get High-res Image Gene #1514: 'AFF1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'AFF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.27 (Fisher's exact test), Q value = 0.6

Table S16002.  Gene #1514: 'AFF1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
AFF1 MUTATED 1 0 1 2
AFF1 WILD-TYPE 32 31 26 17
'AFF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.766 (Fisher's exact test), Q value = 1

Table S16003.  Gene #1514: 'AFF1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
AFF1 MUTATED 3 0 0 1
AFF1 WILD-TYPE 51 10 24 21
'MANBA MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00147 (Fisher's exact test), Q value = 0.031

Table S16004.  Gene #1515: 'MANBA MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
MANBA MUTATED 2 0 0 5
MANBA WILD-TYPE 44 58 64 38

Figure S4101.  Get High-res Image Gene #1515: 'MANBA MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'MANBA MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00049 (Fisher's exact test), Q value = 0.015

Table S16005.  Gene #1515: 'MANBA MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
MANBA MUTATED 6 0 1
MANBA WILD-TYPE 45 83 76

Figure S4102.  Get High-res Image Gene #1515: 'MANBA MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'MANBA MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00735 (Fisher's exact test), Q value = 0.079

Table S16006.  Gene #1515: 'MANBA MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
MANBA MUTATED 11 2 0 0
MANBA WILD-TYPE 167 181 101 20

Figure S4103.  Get High-res Image Gene #1515: 'MANBA MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'MANBA MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.521 (Fisher's exact test), Q value = 0.84

Table S16007.  Gene #1515: 'MANBA MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
MANBA MUTATED 3 2 1
MANBA WILD-TYPE 84 78 99
'MANBA MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0731 (Fisher's exact test), Q value = 0.29

Table S16008.  Gene #1515: 'MANBA MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
MANBA MUTATED 0 4 7
MANBA WILD-TYPE 89 156 131
'MANBA MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.263 (Fisher's exact test), Q value = 0.59

Table S16009.  Gene #1515: 'MANBA MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
MANBA MUTATED 7 4 0
MANBA WILD-TYPE 175 129 72
'MANBA MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.905 (Fisher's exact test), Q value = 1

Table S16010.  Gene #1515: 'MANBA MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
MANBA MUTATED 2 3 2 6
MANBA WILD-TYPE 110 93 90 180
'MANBA MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0835 (Fisher's exact test), Q value = 0.31

Table S16011.  Gene #1515: 'MANBA MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
MANBA MUTATED 2 2 1 1 1 0 6
MANBA WILD-TYPE 58 48 48 39 62 125 93
'MANBA MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.651 (Fisher's exact test), Q value = 0.94

Table S16012.  Gene #1515: 'MANBA MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
MANBA MUTATED 3 2 0 6
MANBA WILD-TYPE 127 76 68 190
'MANBA MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.587 (Fisher's exact test), Q value = 0.89

Table S16013.  Gene #1515: 'MANBA MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
MANBA MUTATED 1 1 0 1 4 2 0 1 1
MANBA WILD-TYPE 39 61 28 79 65 46 43 27 73
'PROM1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00823 (Fisher's exact test), Q value = 0.084

Table S16014.  Gene #1516: 'PROM1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
PROM1 MUTATED 0 0 0 3
PROM1 WILD-TYPE 46 58 64 40

Figure S4104.  Get High-res Image Gene #1516: 'PROM1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'PROM1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S16015.  Gene #1516: 'PROM1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
PROM1 MUTATED 1 1 1
PROM1 WILD-TYPE 50 82 76
'PROM1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.426 (Fisher's exact test), Q value = 0.75

Table S16016.  Gene #1516: 'PROM1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
PROM1 MUTATED 8 7 1 0
PROM1 WILD-TYPE 170 176 100 20
'PROM1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.936 (Fisher's exact test), Q value = 1

Table S16017.  Gene #1516: 'PROM1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
PROM1 MUTATED 5 4 4
PROM1 WILD-TYPE 82 76 96
'PROM1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.32 (Fisher's exact test), Q value = 0.65

Table S16018.  Gene #1516: 'PROM1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
PROM1 MUTATED 1 6 7
PROM1 WILD-TYPE 88 154 131
'PROM1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.821 (Fisher's exact test), Q value = 1

Table S16019.  Gene #1516: 'PROM1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
PROM1 MUTATED 6 6 2
PROM1 WILD-TYPE 176 127 70
'PROM1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.28 (Fisher's exact test), Q value = 0.61

Table S16020.  Gene #1516: 'PROM1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
PROM1 MUTATED 6 4 3 3
PROM1 WILD-TYPE 106 92 89 183
'PROM1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00105 (Fisher's exact test), Q value = 0.025

Table S16021.  Gene #1516: 'PROM1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
PROM1 MUTATED 6 1 5 1 1 0 2
PROM1 WILD-TYPE 54 49 44 39 62 125 97

Figure S4105.  Get High-res Image Gene #1516: 'PROM1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'PROM1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.614 (Fisher's exact test), Q value = 0.91

Table S16022.  Gene #1516: 'PROM1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
PROM1 MUTATED 4 4 3 5
PROM1 WILD-TYPE 126 74 65 191
'PROM1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0878 (Fisher's exact test), Q value = 0.32

Table S16023.  Gene #1516: 'PROM1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
PROM1 MUTATED 2 2 2 2 5 0 3 0 0
PROM1 WILD-TYPE 38 60 26 78 64 48 40 28 74
'PROM1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.866 (Fisher's exact test), Q value = 1

Table S16024.  Gene #1516: 'PROM1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
PROM1 MUTATED 1 1 2 1
PROM1 WILD-TYPE 32 30 25 18
'PROM1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.294 (Fisher's exact test), Q value = 0.62

Table S16025.  Gene #1516: 'PROM1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
PROM1 MUTATED 1 1 2 1
PROM1 WILD-TYPE 53 9 22 21
'AMBRA1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00159 (Fisher's exact test), Q value = 0.033

Table S16026.  Gene #1517: 'AMBRA1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
AMBRA1 MUTATED 0 0 0 4
AMBRA1 WILD-TYPE 46 58 64 39

Figure S4106.  Get High-res Image Gene #1517: 'AMBRA1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'AMBRA1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.039 (Fisher's exact test), Q value = 0.21

Table S16027.  Gene #1517: 'AMBRA1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
AMBRA1 MUTATED 3 0 1
AMBRA1 WILD-TYPE 48 83 76

Figure S4107.  Get High-res Image Gene #1517: 'AMBRA1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'AMBRA1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00031 (Fisher's exact test), Q value = 0.011

Table S16028.  Gene #1517: 'AMBRA1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
AMBRA1 MUTATED 16 1 2 0
AMBRA1 WILD-TYPE 162 182 99 20

Figure S4108.  Get High-res Image Gene #1517: 'AMBRA1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'AMBRA1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S16029.  Gene #1517: 'AMBRA1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
AMBRA1 MUTATED 5 4 6
AMBRA1 WILD-TYPE 82 76 94
'AMBRA1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0799 (Fisher's exact test), Q value = 0.3

Table S16030.  Gene #1517: 'AMBRA1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
AMBRA1 MUTATED 3 4 11
AMBRA1 WILD-TYPE 86 156 127
'AMBRA1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.734 (Fisher's exact test), Q value = 1

Table S16031.  Gene #1517: 'AMBRA1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
AMBRA1 MUTATED 10 6 2
AMBRA1 WILD-TYPE 172 127 70
'AMBRA1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.156 (Fisher's exact test), Q value = 0.44

Table S16032.  Gene #1517: 'AMBRA1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
AMBRA1 MUTATED 3 6 6 4
AMBRA1 WILD-TYPE 109 90 86 182
'AMBRA1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00091 (Fisher's exact test), Q value = 0.023

Table S16033.  Gene #1517: 'AMBRA1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
AMBRA1 MUTATED 3 3 7 0 2 0 4
AMBRA1 WILD-TYPE 57 47 42 40 61 125 95

Figure S4109.  Get High-res Image Gene #1517: 'AMBRA1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'AMBRA1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.165 (Fisher's exact test), Q value = 0.46

Table S16034.  Gene #1517: 'AMBRA1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
AMBRA1 MUTATED 8 4 1 4
AMBRA1 WILD-TYPE 122 74 67 192
'AMBRA1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.101 (Fisher's exact test), Q value = 0.35

Table S16035.  Gene #1517: 'AMBRA1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
AMBRA1 MUTATED 0 7 1 2 4 1 1 0 1
AMBRA1 WILD-TYPE 40 55 27 78 65 47 42 28 73
'AMBRA1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.401 (Fisher's exact test), Q value = 0.73

Table S16036.  Gene #1517: 'AMBRA1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
AMBRA1 MUTATED 2 2 0 2
AMBRA1 WILD-TYPE 31 29 27 17
'AMBRA1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.46 (Fisher's exact test), Q value = 0.79

Table S16037.  Gene #1517: 'AMBRA1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
AMBRA1 MUTATED 4 1 0 1
AMBRA1 WILD-TYPE 50 9 24 21
'TBC1D10C MUTATION STATUS' versus 'CN_CNMF'

P value = 0.164 (Fisher's exact test), Q value = 0.46

Table S16038.  Gene #1518: 'TBC1D10C MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
TBC1D10C MUTATED 5 1 2 1
TBC1D10C WILD-TYPE 173 182 99 19
'TBC1D10C MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.23 (Fisher's exact test), Q value = 0.55

Table S16039.  Gene #1518: 'TBC1D10C MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
TBC1D10C MUTATED 1 1 5
TBC1D10C WILD-TYPE 86 79 95
'TBC1D10C MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.874 (Fisher's exact test), Q value = 1

Table S16040.  Gene #1518: 'TBC1D10C MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
TBC1D10C MUTATED 1 2 3
TBC1D10C WILD-TYPE 88 158 135
'TBC1D10C MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.338 (Fisher's exact test), Q value = 0.67

Table S16041.  Gene #1518: 'TBC1D10C MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
TBC1D10C MUTATED 5 1 0
TBC1D10C WILD-TYPE 177 132 72
'TBC1D10C MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.602 (Fisher's exact test), Q value = 0.9

Table S16042.  Gene #1518: 'TBC1D10C MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
TBC1D10C MUTATED 2 3 2 2
TBC1D10C WILD-TYPE 110 93 90 184
'TBC1D10C MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0104 (Fisher's exact test), Q value = 0.098

Table S16043.  Gene #1518: 'TBC1D10C MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
TBC1D10C MUTATED 2 0 4 1 0 0 2
TBC1D10C WILD-TYPE 58 50 45 39 63 125 97

Figure S4110.  Get High-res Image Gene #1518: 'TBC1D10C MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'TBC1D10C MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.071 (Fisher's exact test), Q value = 0.29

Table S16044.  Gene #1518: 'TBC1D10C MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
TBC1D10C MUTATED 6 0 1 2
TBC1D10C WILD-TYPE 124 78 67 194
'TBC1D10C MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.183 (Fisher's exact test), Q value = 0.48

Table S16045.  Gene #1518: 'TBC1D10C MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
TBC1D10C MUTATED 1 1 0 0 4 1 1 1 0
TBC1D10C WILD-TYPE 39 61 28 80 65 47 42 27 74
'TBC1D10C MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.595 (Fisher's exact test), Q value = 0.9

Table S16046.  Gene #1518: 'TBC1D10C MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
TBC1D10C MUTATED 2 0 1 1
TBC1D10C WILD-TYPE 31 31 26 18
'TBC1D10C MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.547 (Fisher's exact test), Q value = 0.87

Table S16047.  Gene #1518: 'TBC1D10C MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
TBC1D10C MUTATED 2 0 0 2
TBC1D10C WILD-TYPE 52 10 24 20
'CD84 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0649 (Fisher's exact test), Q value = 0.28

Table S16048.  Gene #1519: 'CD84 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
CD84 MUTATED 1 0 0 2
CD84 WILD-TYPE 45 58 64 41
'CD84 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.186 (Fisher's exact test), Q value = 0.49

Table S16049.  Gene #1519: 'CD84 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
CD84 MUTATED 2 0 1
CD84 WILD-TYPE 49 83 76
'CD84 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00471 (Fisher's exact test), Q value = 0.062

Table S16050.  Gene #1519: 'CD84 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
CD84 MUTATED 9 0 2 1
CD84 WILD-TYPE 169 183 99 19

Figure S4111.  Get High-res Image Gene #1519: 'CD84 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'CD84 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.76 (Fisher's exact test), Q value = 1

Table S16051.  Gene #1519: 'CD84 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
CD84 MUTATED 4 2 3
CD84 WILD-TYPE 83 78 97
'CD84 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.606 (Fisher's exact test), Q value = 0.91

Table S16052.  Gene #1519: 'CD84 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
CD84 MUTATED 1 4 5
CD84 WILD-TYPE 88 156 133
'CD84 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.149 (Fisher's exact test), Q value = 0.43

Table S16053.  Gene #1519: 'CD84 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
CD84 MUTATED 4 6 0
CD84 WILD-TYPE 178 127 72
'CD84 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.734 (Fisher's exact test), Q value = 1

Table S16054.  Gene #1519: 'CD84 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
CD84 MUTATED 3 3 3 3
CD84 WILD-TYPE 109 93 89 183
'CD84 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.181 (Fisher's exact test), Q value = 0.48

Table S16055.  Gene #1519: 'CD84 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
CD84 MUTATED 3 1 2 1 2 0 3
CD84 WILD-TYPE 57 49 47 39 61 125 96
'CD84 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.712 (Fisher's exact test), Q value = 0.98

Table S16056.  Gene #1519: 'CD84 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
CD84 MUTATED 2 3 2 5
CD84 WILD-TYPE 128 75 66 191
'CD84 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.731 (Fisher's exact test), Q value = 1

Table S16057.  Gene #1519: 'CD84 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
CD84 MUTATED 1 2 0 1 4 1 2 0 1
CD84 WILD-TYPE 39 60 28 79 65 47 41 28 73
'CD84 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S16058.  Gene #1519: 'CD84 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
CD84 MUTATED 1 1 1 0
CD84 WILD-TYPE 32 30 26 19
'CD84 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.695 (Fisher's exact test), Q value = 0.97

Table S16059.  Gene #1519: 'CD84 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
CD84 MUTATED 1 0 1 1
CD84 WILD-TYPE 53 10 23 21
'DNMT1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0484 (Fisher's exact test), Q value = 0.23

Table S16060.  Gene #1520: 'DNMT1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
DNMT1 MUTATED 4 2 2 7
DNMT1 WILD-TYPE 42 56 62 36

Figure S4112.  Get High-res Image Gene #1520: 'DNMT1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'DNMT1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0394 (Fisher's exact test), Q value = 0.21

Table S16061.  Gene #1520: 'DNMT1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
DNMT1 MUTATED 8 4 3
DNMT1 WILD-TYPE 43 79 74

Figure S4113.  Get High-res Image Gene #1520: 'DNMT1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'DNMT1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0108 (Fisher's exact test), Q value = 0.1

Table S16062.  Gene #1520: 'DNMT1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
DNMT1 MUTATED 17 5 2 0
DNMT1 WILD-TYPE 161 178 99 20

Figure S4114.  Get High-res Image Gene #1520: 'DNMT1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'DNMT1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0684 (Fisher's exact test), Q value = 0.28

Table S16063.  Gene #1520: 'DNMT1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
DNMT1 MUTATED 2 0 6
DNMT1 WILD-TYPE 85 80 94
'DNMT1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.831 (Fisher's exact test), Q value = 1

Table S16064.  Gene #1520: 'DNMT1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
DNMT1 MUTATED 4 7 8
DNMT1 WILD-TYPE 85 153 130
'DNMT1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.55 (Fisher's exact test), Q value = 0.87

Table S16065.  Gene #1520: 'DNMT1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
DNMT1 MUTATED 9 5 5
DNMT1 WILD-TYPE 173 128 67
'DNMT1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00253 (Fisher's exact test), Q value = 0.044

Table S16066.  Gene #1520: 'DNMT1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
DNMT1 MUTATED 0 7 2 14
DNMT1 WILD-TYPE 112 89 90 172

Figure S4115.  Get High-res Image Gene #1520: 'DNMT1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'DNMT1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0086 (Fisher's exact test), Q value = 0.086

Table S16067.  Gene #1520: 'DNMT1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
DNMT1 MUTATED 1 3 5 0 0 4 10
DNMT1 WILD-TYPE 59 47 44 40 63 121 89

Figure S4116.  Get High-res Image Gene #1520: 'DNMT1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'DNMT1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0321 (Fisher's exact test), Q value = 0.18

Table S16068.  Gene #1520: 'DNMT1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
DNMT1 MUTATED 4 1 1 16
DNMT1 WILD-TYPE 126 77 67 180

Figure S4117.  Get High-res Image Gene #1520: 'DNMT1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'DNMT1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00325 (Fisher's exact test), Q value = 0.051

Table S16069.  Gene #1520: 'DNMT1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
DNMT1 MUTATED 0 2 1 1 10 0 1 3 4
DNMT1 WILD-TYPE 40 60 27 79 59 48 42 25 70

Figure S4118.  Get High-res Image Gene #1520: 'DNMT1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'TUT1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.307 (Fisher's exact test), Q value = 0.64

Table S16070.  Gene #1521: 'TUT1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
TUT1 MUTATED 1 1 0 2
TUT1 WILD-TYPE 45 57 64 41
'TUT1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.175 (Fisher's exact test), Q value = 0.47

Table S16071.  Gene #1521: 'TUT1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
TUT1 MUTATED 2 0 2
TUT1 WILD-TYPE 49 83 75
'TUT1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.011 (Fisher's exact test), Q value = 0.1

Table S16072.  Gene #1521: 'TUT1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
TUT1 MUTATED 9 1 0 0
TUT1 WILD-TYPE 169 182 101 20

Figure S4119.  Get High-res Image Gene #1521: 'TUT1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'TUT1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.288 (Fisher's exact test), Q value = 0.62

Table S16073.  Gene #1521: 'TUT1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
TUT1 MUTATED 3 0 3
TUT1 WILD-TYPE 84 80 97
'TUT1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00052 (Fisher's exact test), Q value = 0.016

Table S16074.  Gene #1521: 'TUT1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
TUT1 MUTATED 0 0 8
TUT1 WILD-TYPE 89 160 130

Figure S4120.  Get High-res Image Gene #1521: 'TUT1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'TUT1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.132 (Fisher's exact test), Q value = 0.41

Table S16075.  Gene #1521: 'TUT1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
TUT1 MUTATED 7 1 0
TUT1 WILD-TYPE 175 132 72
'TUT1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.143 (Fisher's exact test), Q value = 0.42

Table S16076.  Gene #1521: 'TUT1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
TUT1 MUTATED 0 2 4 4
TUT1 WILD-TYPE 112 94 88 182
'TUT1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0456 (Fisher's exact test), Q value = 0.23

Table S16077.  Gene #1521: 'TUT1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
TUT1 MUTATED 0 3 3 0 0 1 3
TUT1 WILD-TYPE 60 47 46 40 63 124 96

Figure S4121.  Get High-res Image Gene #1521: 'TUT1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'TUT1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.621 (Fisher's exact test), Q value = 0.92

Table S16078.  Gene #1521: 'TUT1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
TUT1 MUTATED 4 1 0 5
TUT1 WILD-TYPE 126 77 68 191
'TUT1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.219 (Fisher's exact test), Q value = 0.53

Table S16079.  Gene #1521: 'TUT1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
TUT1 MUTATED 2 2 2 2 2 0 0 0 0
TUT1 WILD-TYPE 38 60 26 78 67 48 43 28 74
'OR9G4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.755 (Fisher's exact test), Q value = 1

Table S16080.  Gene #1522: 'OR9G4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
OR9G4 MUTATED 4 2 2 0
OR9G4 WILD-TYPE 174 181 99 20
'OR9G4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.878 (Fisher's exact test), Q value = 1

Table S16081.  Gene #1522: 'OR9G4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
OR9G4 MUTATED 2 1 3
OR9G4 WILD-TYPE 85 79 97
'OR9G4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.658 (Fisher's exact test), Q value = 0.94

Table S16082.  Gene #1522: 'OR9G4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
OR9G4 MUTATED 2 2 4
OR9G4 WILD-TYPE 87 158 134
'OR9G4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.564 (Fisher's exact test), Q value = 0.87

Table S16083.  Gene #1522: 'OR9G4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
OR9G4 MUTATED 5 3 0
OR9G4 WILD-TYPE 177 130 72
'OR9G4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.558 (Fisher's exact test), Q value = 0.87

Table S16084.  Gene #1522: 'OR9G4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
OR9G4 MUTATED 1 3 2 2
OR9G4 WILD-TYPE 111 93 90 184
'OR9G4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.213 (Fisher's exact test), Q value = 0.52

Table S16085.  Gene #1522: 'OR9G4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
OR9G4 MUTATED 1 2 0 1 2 0 2
OR9G4 WILD-TYPE 59 48 49 39 61 125 97
'OR9G4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.483 (Fisher's exact test), Q value = 0.81

Table S16086.  Gene #1522: 'OR9G4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
OR9G4 MUTATED 3 2 0 2
OR9G4 WILD-TYPE 127 76 68 194
'OR9G4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00614 (Fisher's exact test), Q value = 0.072

Table S16087.  Gene #1522: 'OR9G4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
OR9G4 MUTATED 2 1 3 1 0 0 0 0 0
OR9G4 WILD-TYPE 38 61 25 79 69 48 43 28 74

Figure S4122.  Get High-res Image Gene #1522: 'OR9G4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'SLC45A2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.276 (Fisher's exact test), Q value = 0.6

Table S16088.  Gene #1523: 'SLC45A2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
SLC45A2 MUTATED 1 3 0 1
SLC45A2 WILD-TYPE 45 55 64 42
'SLC45A2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.37 (Fisher's exact test), Q value = 0.7

Table S16089.  Gene #1523: 'SLC45A2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
SLC45A2 MUTATED 0 2 3
SLC45A2 WILD-TYPE 51 81 74
'SLC45A2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.61 (Fisher's exact test), Q value = 0.91

Table S16090.  Gene #1523: 'SLC45A2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
SLC45A2 MUTATED 4 3 4 0
SLC45A2 WILD-TYPE 174 180 97 20
'SLC45A2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.255 (Fisher's exact test), Q value = 0.58

Table S16091.  Gene #1523: 'SLC45A2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
SLC45A2 MUTATED 2 0 4
SLC45A2 WILD-TYPE 85 80 96
'SLC45A2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.305 (Fisher's exact test), Q value = 0.64

Table S16092.  Gene #1523: 'SLC45A2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
SLC45A2 MUTATED 0 3 4
SLC45A2 WILD-TYPE 89 157 134
'SLC45A2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.685 (Fisher's exact test), Q value = 0.96

Table S16093.  Gene #1523: 'SLC45A2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
SLC45A2 MUTATED 4 3 0
SLC45A2 WILD-TYPE 178 130 72
'SLC45A2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.161 (Fisher's exact test), Q value = 0.45

Table S16094.  Gene #1523: 'SLC45A2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
SLC45A2 MUTATED 0 2 4 5
SLC45A2 WILD-TYPE 112 94 88 181
'SLC45A2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.536 (Fisher's exact test), Q value = 0.86

Table S16095.  Gene #1523: 'SLC45A2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
SLC45A2 MUTATED 2 2 2 0 1 1 3
SLC45A2 WILD-TYPE 58 48 47 40 62 124 96
'SLC45A2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.54 (Fisher's exact test), Q value = 0.86

Table S16096.  Gene #1523: 'SLC45A2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
SLC45A2 MUTATED 4 1 0 6
SLC45A2 WILD-TYPE 126 77 68 190
'SLC45A2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.25 (Fisher's exact test), Q value = 0.58

Table S16097.  Gene #1523: 'SLC45A2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
SLC45A2 MUTATED 2 1 0 2 5 0 0 0 1
SLC45A2 WILD-TYPE 38 61 28 78 64 48 43 28 73
'SPARCL1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0726 (Fisher's exact test), Q value = 0.29

Table S16098.  Gene #1524: 'SPARCL1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
SPARCL1 MUTATED 2 0 0 2
SPARCL1 WILD-TYPE 44 58 64 41
'SPARCL1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0397 (Fisher's exact test), Q value = 0.21

Table S16099.  Gene #1524: 'SPARCL1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
SPARCL1 MUTATED 3 0 1
SPARCL1 WILD-TYPE 48 83 76

Figure S4123.  Get High-res Image Gene #1524: 'SPARCL1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'SPARCL1 MUTATION STATUS' versus 'CN_CNMF'

P value = 2e-05 (Fisher's exact test), Q value = 0.0017

Table S16100.  Gene #1524: 'SPARCL1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
SPARCL1 MUTATED 15 0 0 0
SPARCL1 WILD-TYPE 163 183 101 20

Figure S4124.  Get High-res Image Gene #1524: 'SPARCL1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'SPARCL1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0383 (Fisher's exact test), Q value = 0.2

Table S16101.  Gene #1524: 'SPARCL1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
SPARCL1 MUTATED 4 0 7
SPARCL1 WILD-TYPE 83 80 93

Figure S4125.  Get High-res Image Gene #1524: 'SPARCL1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'SPARCL1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.652 (Fisher's exact test), Q value = 0.94

Table S16102.  Gene #1524: 'SPARCL1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
SPARCL1 MUTATED 2 4 6
SPARCL1 WILD-TYPE 87 156 132
'SPARCL1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.743 (Fisher's exact test), Q value = 1

Table S16103.  Gene #1524: 'SPARCL1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
SPARCL1 MUTATED 6 5 1
SPARCL1 WILD-TYPE 176 128 71
'SPARCL1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0317 (Fisher's exact test), Q value = 0.18

Table S16104.  Gene #1524: 'SPARCL1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
SPARCL1 MUTATED 0 6 4 5
SPARCL1 WILD-TYPE 112 90 88 181

Figure S4126.  Get High-res Image Gene #1524: 'SPARCL1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'SPARCL1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00276 (Fisher's exact test), Q value = 0.046

Table S16105.  Gene #1524: 'SPARCL1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
SPARCL1 MUTATED 1 1 6 1 1 0 5
SPARCL1 WILD-TYPE 59 49 43 39 62 125 94

Figure S4127.  Get High-res Image Gene #1524: 'SPARCL1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'SPARCL1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.39 (Fisher's exact test), Q value = 0.72

Table S16106.  Gene #1524: 'SPARCL1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
SPARCL1 MUTATED 5 2 0 8
SPARCL1 WILD-TYPE 125 76 68 188
'SPARCL1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0148 (Fisher's exact test), Q value = 0.12

Table S16107.  Gene #1524: 'SPARCL1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
SPARCL1 MUTATED 1 2 1 0 8 0 1 0 2
SPARCL1 WILD-TYPE 39 60 27 80 61 48 42 28 72

Figure S4128.  Get High-res Image Gene #1524: 'SPARCL1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'SPARCL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00366 (Fisher's exact test), Q value = 0.055

Table S16108.  Gene #1524: 'SPARCL1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
SPARCL1 MUTATED 1 0 0 4
SPARCL1 WILD-TYPE 32 31 27 15

Figure S4129.  Get High-res Image Gene #1524: 'SPARCL1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'SPARCL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.188 (Fisher's exact test), Q value = 0.49

Table S16109.  Gene #1524: 'SPARCL1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
SPARCL1 MUTATED 2 0 3 0
SPARCL1 WILD-TYPE 52 10 21 22
'NBPF14 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.66 (Fisher's exact test), Q value = 0.95

Table S16110.  Gene #1525: 'NBPF14 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
NBPF14 MUTATED 2 1 0 0
NBPF14 WILD-TYPE 176 182 101 20
'NBPF14 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.514 (Fisher's exact test), Q value = 0.83

Table S16111.  Gene #1525: 'NBPF14 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
NBPF14 MUTATED 2 0 1
NBPF14 WILD-TYPE 85 80 99
'NBPF14 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.795 (Fisher's exact test), Q value = 1

Table S16112.  Gene #1525: 'NBPF14 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
NBPF14 MUTATED 0 2 1
NBPF14 WILD-TYPE 89 158 137
'NBPF14 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.772 (Fisher's exact test), Q value = 1

Table S16113.  Gene #1525: 'NBPF14 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
NBPF14 MUTATED 1 1 1
NBPF14 WILD-TYPE 181 132 71
'NBPF14 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0485 (Fisher's exact test), Q value = 0.24

Table S16114.  Gene #1525: 'NBPF14 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
NBPF14 MUTATED 0 1 2 0
NBPF14 WILD-TYPE 112 95 90 186

Figure S4130.  Get High-res Image Gene #1525: 'NBPF14 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'NBPF14 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.108 (Fisher's exact test), Q value = 0.36

Table S16115.  Gene #1525: 'NBPF14 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
NBPF14 MUTATED 1 0 1 1 0 0 0
NBPF14 WILD-TYPE 59 50 48 39 63 125 99
'NBPF14 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.259 (Fisher's exact test), Q value = 0.58

Table S16116.  Gene #1525: 'NBPF14 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
NBPF14 MUTATED 1 1 1 0
NBPF14 WILD-TYPE 129 77 67 196
'NBPF14 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.402 (Fisher's exact test), Q value = 0.73

Table S16117.  Gene #1525: 'NBPF14 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
NBPF14 MUTATED 0 1 0 0 0 1 1 0 0
NBPF14 WILD-TYPE 40 61 28 80 69 47 42 28 74
'SLC44A1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.404 (Fisher's exact test), Q value = 0.73

Table S16118.  Gene #1526: 'SLC44A1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
SLC44A1 MUTATED 1 0 1 2
SLC44A1 WILD-TYPE 45 58 63 41
'SLC44A1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.834 (Fisher's exact test), Q value = 1

Table S16119.  Gene #1526: 'SLC44A1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
SLC44A1 MUTATED 1 1 2
SLC44A1 WILD-TYPE 50 82 75
'SLC44A1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0582 (Fisher's exact test), Q value = 0.26

Table S16120.  Gene #1526: 'SLC44A1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
SLC44A1 MUTATED 8 2 0 0
SLC44A1 WILD-TYPE 170 181 101 20
'SLC44A1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.288 (Fisher's exact test), Q value = 0.62

Table S16121.  Gene #1526: 'SLC44A1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
SLC44A1 MUTATED 3 0 3
SLC44A1 WILD-TYPE 84 80 97
'SLC44A1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.894 (Fisher's exact test), Q value = 1

Table S16122.  Gene #1526: 'SLC44A1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
SLC44A1 MUTATED 2 3 2
SLC44A1 WILD-TYPE 87 157 136
'SLC44A1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.684 (Fisher's exact test), Q value = 0.96

Table S16123.  Gene #1526: 'SLC44A1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
SLC44A1 MUTATED 4 3 0
SLC44A1 WILD-TYPE 178 130 72
'SLC44A1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.171 (Fisher's exact test), Q value = 0.47

Table S16124.  Gene #1526: 'SLC44A1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
SLC44A1 MUTATED 0 4 2 4
SLC44A1 WILD-TYPE 112 92 90 182
'SLC44A1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.394 (Fisher's exact test), Q value = 0.72

Table S16125.  Gene #1526: 'SLC44A1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
SLC44A1 MUTATED 1 3 2 0 1 2 1
SLC44A1 WILD-TYPE 59 47 47 40 62 123 98
'SLC44A1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.637 (Fisher's exact test), Q value = 0.93

Table S16126.  Gene #1526: 'SLC44A1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
SLC44A1 MUTATED 4 2 0 4
SLC44A1 WILD-TYPE 126 76 68 192
'SLC44A1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.615 (Fisher's exact test), Q value = 0.91

Table S16127.  Gene #1526: 'SLC44A1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
SLC44A1 MUTATED 2 1 0 3 3 0 0 0 1
SLC44A1 WILD-TYPE 38 61 28 77 66 48 43 28 73
'C14ORF105 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.276 (Fisher's exact test), Q value = 0.6

Table S16128.  Gene #1527: 'C14ORF105 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
C14ORF105 MUTATED 3 0 0 0
C14ORF105 WILD-TYPE 175 183 101 20
'C14ORF105 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.521 (Fisher's exact test), Q value = 0.84

Table S16129.  Gene #1527: 'C14ORF105 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
C14ORF105 MUTATED 0 0 1 2
C14ORF105 WILD-TYPE 112 96 91 184
'C14ORF105 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.287 (Fisher's exact test), Q value = 0.62

Table S16130.  Gene #1527: 'C14ORF105 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
C14ORF105 MUTATED 0 0 1 0 0 0 2
C14ORF105 WILD-TYPE 60 50 48 40 63 125 97
'C14ORF105 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.55 (Fisher's exact test), Q value = 0.87

Table S16131.  Gene #1527: 'C14ORF105 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
C14ORF105 MUTATED 0 1 0 2
C14ORF105 WILD-TYPE 130 77 68 194
'C14ORF105 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.38 (Fisher's exact test), Q value = 0.71

Table S16132.  Gene #1527: 'C14ORF105 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
C14ORF105 MUTATED 0 1 1 0 1 0 0 0 0
C14ORF105 WILD-TYPE 40 61 27 80 68 48 43 28 74
'CCDC141 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00878 (Fisher's exact test), Q value = 0.087

Table S16133.  Gene #1528: 'CCDC141 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
CCDC141 MUTATED 1 0 1 5
CCDC141 WILD-TYPE 45 58 63 38

Figure S4131.  Get High-res Image Gene #1528: 'CCDC141 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'CCDC141 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.124 (Fisher's exact test), Q value = 0.39

Table S16134.  Gene #1528: 'CCDC141 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
CCDC141 MUTATED 4 2 1
CCDC141 WILD-TYPE 47 81 76
'CCDC141 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.199 (Fisher's exact test), Q value = 0.5

Table S16135.  Gene #1528: 'CCDC141 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
CCDC141 MUTATED 13 5 5 0
CCDC141 WILD-TYPE 165 178 96 20
'CCDC141 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.637 (Fisher's exact test), Q value = 0.93

Table S16136.  Gene #1528: 'CCDC141 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
CCDC141 MUTATED 6 5 4
CCDC141 WILD-TYPE 81 75 96
'CCDC141 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.864 (Fisher's exact test), Q value = 1

Table S16137.  Gene #1528: 'CCDC141 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
CCDC141 MUTATED 3 8 7
CCDC141 WILD-TYPE 86 152 131
'CCDC141 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.95 (Fisher's exact test), Q value = 1

Table S16138.  Gene #1528: 'CCDC141 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
CCDC141 MUTATED 8 7 3
CCDC141 WILD-TYPE 174 126 69
'CCDC141 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.745 (Fisher's exact test), Q value = 1

Table S16139.  Gene #1528: 'CCDC141 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
CCDC141 MUTATED 5 3 6 9
CCDC141 WILD-TYPE 107 93 86 177
'CCDC141 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0238 (Fisher's exact test), Q value = 0.16

Table S16140.  Gene #1528: 'CCDC141 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
CCDC141 MUTATED 6 4 2 0 3 1 7
CCDC141 WILD-TYPE 54 46 47 40 60 124 92

Figure S4132.  Get High-res Image Gene #1528: 'CCDC141 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CCDC141 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.38 (Fisher's exact test), Q value = 0.71

Table S16141.  Gene #1528: 'CCDC141 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
CCDC141 MUTATED 9 4 1 8
CCDC141 WILD-TYPE 121 74 67 188
'CCDC141 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.692 (Fisher's exact test), Q value = 0.97

Table S16142.  Gene #1528: 'CCDC141 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
CCDC141 MUTATED 1 2 3 2 5 3 1 1 4
CCDC141 WILD-TYPE 39 60 25 78 64 45 42 27 70
'SSX2IP MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00791 (Fisher's exact test), Q value = 0.083

Table S16143.  Gene #1529: 'SSX2IP MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
SSX2IP MUTATED 0 0 0 3
SSX2IP WILD-TYPE 46 58 64 40

Figure S4133.  Get High-res Image Gene #1529: 'SSX2IP MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'SSX2IP MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.62 (Fisher's exact test), Q value = 0.92

Table S16144.  Gene #1529: 'SSX2IP MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
SSX2IP MUTATED 0 1 2
SSX2IP WILD-TYPE 51 82 75
'SSX2IP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.46 (Fisher's exact test), Q value = 0.79

Table S16145.  Gene #1529: 'SSX2IP MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
SSX2IP MUTATED 6 2 1 0
SSX2IP WILD-TYPE 172 181 100 20
'SSX2IP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.386 (Fisher's exact test), Q value = 0.71

Table S16146.  Gene #1529: 'SSX2IP MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
SSX2IP MUTATED 2 0 3
SSX2IP WILD-TYPE 85 80 97
'SSX2IP MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S16147.  Gene #1529: 'SSX2IP MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
SSX2IP MUTATED 2 3 3
SSX2IP WILD-TYPE 87 157 135
'SSX2IP MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.639 (Fisher's exact test), Q value = 0.93

Table S16148.  Gene #1529: 'SSX2IP MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
SSX2IP MUTATED 3 4 1
SSX2IP WILD-TYPE 179 129 71
'SSX2IP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.858 (Fisher's exact test), Q value = 1

Table S16149.  Gene #1529: 'SSX2IP MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
SSX2IP MUTATED 1 2 2 3
SSX2IP WILD-TYPE 111 94 90 183
'SSX2IP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0781 (Fisher's exact test), Q value = 0.3

Table S16150.  Gene #1529: 'SSX2IP MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
SSX2IP MUTATED 1 3 1 1 0 0 2
SSX2IP WILD-TYPE 59 47 48 39 63 125 97
'SSX2IP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.692 (Fisher's exact test), Q value = 0.97

Table S16151.  Gene #1529: 'SSX2IP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
SSX2IP MUTATED 2 2 0 5
SSX2IP WILD-TYPE 128 76 68 191
'SSX2IP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.248 (Fisher's exact test), Q value = 0.57

Table S16152.  Gene #1529: 'SSX2IP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
SSX2IP MUTATED 1 3 1 0 3 0 0 0 1
SSX2IP WILD-TYPE 39 59 27 80 66 48 43 28 73
'CSPP1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0265 (Fisher's exact test), Q value = 0.16

Table S16153.  Gene #1530: 'CSPP1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
CSPP1 MUTATED 3 0 0 2
CSPP1 WILD-TYPE 43 58 64 41

Figure S4134.  Get High-res Image Gene #1530: 'CSPP1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'CSPP1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.738 (Fisher's exact test), Q value = 1

Table S16154.  Gene #1530: 'CSPP1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
CSPP1 MUTATED 2 2 1
CSPP1 WILD-TYPE 49 81 76
'CSPP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0436 (Fisher's exact test), Q value = 0.22

Table S16155.  Gene #1530: 'CSPP1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
CSPP1 MUTATED 12 4 1 1
CSPP1 WILD-TYPE 166 179 100 19

Figure S4135.  Get High-res Image Gene #1530: 'CSPP1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'CSPP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.526 (Fisher's exact test), Q value = 0.85

Table S16156.  Gene #1530: 'CSPP1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
CSPP1 MUTATED 5 2 6
CSPP1 WILD-TYPE 82 78 94
'CSPP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.166 (Fisher's exact test), Q value = 0.46

Table S16157.  Gene #1530: 'CSPP1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
CSPP1 MUTATED 1 5 8
CSPP1 WILD-TYPE 88 155 130
'CSPP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.636 (Fisher's exact test), Q value = 0.93

Table S16158.  Gene #1530: 'CSPP1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
CSPP1 MUTATED 8 5 1
CSPP1 WILD-TYPE 174 128 71
'CSPP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.506 (Fisher's exact test), Q value = 0.83

Table S16159.  Gene #1530: 'CSPP1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
CSPP1 MUTATED 3 5 5 5
CSPP1 WILD-TYPE 109 91 87 181
'CSPP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.102 (Fisher's exact test), Q value = 0.35

Table S16160.  Gene #1530: 'CSPP1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
CSPP1 MUTATED 4 2 4 0 3 1 4
CSPP1 WILD-TYPE 56 48 45 40 60 124 95
'CSPP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S16161.  Gene #1530: 'CSPP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
CSPP1 MUTATED 5 3 2 8
CSPP1 WILD-TYPE 125 75 66 188
'CSPP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.129 (Fisher's exact test), Q value = 0.4

Table S16162.  Gene #1530: 'CSPP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
CSPP1 MUTATED 1 4 1 2 7 0 2 0 1
CSPP1 WILD-TYPE 39 58 27 78 62 48 41 28 73
'CSPP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.726 (Fisher's exact test), Q value = 0.99

Table S16163.  Gene #1530: 'CSPP1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
CSPP1 MUTATED 2 1 1 2
CSPP1 WILD-TYPE 31 30 26 17
'CSPP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.789 (Fisher's exact test), Q value = 1

Table S16164.  Gene #1530: 'CSPP1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
CSPP1 MUTATED 3 1 1 1
CSPP1 WILD-TYPE 51 9 23 21
'CDS2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0165 (Fisher's exact test), Q value = 0.13

Table S16165.  Gene #1531: 'CDS2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
CDS2 MUTATED 1 0 0 3
CDS2 WILD-TYPE 45 58 64 40

Figure S4136.  Get High-res Image Gene #1531: 'CDS2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'CDS2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0608 (Fisher's exact test), Q value = 0.27

Table S16166.  Gene #1531: 'CDS2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
CDS2 MUTATED 3 1 0
CDS2 WILD-TYPE 48 82 77
'CDS2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0566 (Fisher's exact test), Q value = 0.26

Table S16167.  Gene #1531: 'CDS2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
CDS2 MUTATED 8 2 0 0
CDS2 WILD-TYPE 170 181 101 20
'CDS2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0546 (Fisher's exact test), Q value = 0.25

Table S16168.  Gene #1531: 'CDS2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
CDS2 MUTATED 0 1 5
CDS2 WILD-TYPE 87 79 95
'CDS2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.509 (Fisher's exact test), Q value = 0.83

Table S16169.  Gene #1531: 'CDS2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
CDS2 MUTATED 1 6 3
CDS2 WILD-TYPE 88 154 135
'CDS2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S16170.  Gene #1531: 'CDS2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
CDS2 MUTATED 5 3 2
CDS2 WILD-TYPE 177 130 70
'CDS2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.826 (Fisher's exact test), Q value = 1

Table S16171.  Gene #1531: 'CDS2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
CDS2 MUTATED 2 3 2 3
CDS2 WILD-TYPE 110 93 90 183
'CDS2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0153 (Fisher's exact test), Q value = 0.12

Table S16172.  Gene #1531: 'CDS2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
CDS2 MUTATED 1 0 4 0 1 0 4
CDS2 WILD-TYPE 59 50 45 40 62 125 95

Figure S4137.  Get High-res Image Gene #1531: 'CDS2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CDS2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.65 (Fisher's exact test), Q value = 0.94

Table S16173.  Gene #1531: 'CDS2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
CDS2 MUTATED 3 1 0 6
CDS2 WILD-TYPE 127 77 68 190
'CDS2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0589 (Fisher's exact test), Q value = 0.27

Table S16174.  Gene #1531: 'CDS2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
CDS2 MUTATED 0 2 1 0 5 1 1 0 0
CDS2 WILD-TYPE 40 60 27 80 64 47 42 28 74
'EPHA4 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0433 (Fisher's exact test), Q value = 0.22

Table S16175.  Gene #1532: 'EPHA4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
EPHA4 MUTATED 4 1 0 2
EPHA4 WILD-TYPE 42 57 64 41

Figure S4138.  Get High-res Image Gene #1532: 'EPHA4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'EPHA4 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0153 (Fisher's exact test), Q value = 0.12

Table S16176.  Gene #1532: 'EPHA4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
EPHA4 MUTATED 5 1 1
EPHA4 WILD-TYPE 46 82 76

Figure S4139.  Get High-res Image Gene #1532: 'EPHA4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'EPHA4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00027 (Fisher's exact test), Q value = 0.01

Table S16177.  Gene #1532: 'EPHA4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
EPHA4 MUTATED 18 2 2 2
EPHA4 WILD-TYPE 160 181 99 18

Figure S4140.  Get High-res Image Gene #1532: 'EPHA4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'EPHA4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0759 (Fisher's exact test), Q value = 0.3

Table S16178.  Gene #1532: 'EPHA4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
EPHA4 MUTATED 3 3 11
EPHA4 WILD-TYPE 84 77 89
'EPHA4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.438 (Fisher's exact test), Q value = 0.76

Table S16179.  Gene #1532: 'EPHA4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
EPHA4 MUTATED 3 12 7
EPHA4 WILD-TYPE 86 148 131
'EPHA4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.916 (Fisher's exact test), Q value = 1

Table S16180.  Gene #1532: 'EPHA4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
EPHA4 MUTATED 11 8 3
EPHA4 WILD-TYPE 171 125 69
'EPHA4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.709 (Fisher's exact test), Q value = 0.98

Table S16181.  Gene #1532: 'EPHA4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
EPHA4 MUTATED 5 7 5 8
EPHA4 WILD-TYPE 107 89 87 178
'EPHA4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00129 (Fisher's exact test), Q value = 0.029

Table S16182.  Gene #1532: 'EPHA4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
EPHA4 MUTATED 3 3 9 1 2 1 6
EPHA4 WILD-TYPE 57 47 40 39 61 124 93

Figure S4141.  Get High-res Image Gene #1532: 'EPHA4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'EPHA4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0222 (Fisher's exact test), Q value = 0.15

Table S16183.  Gene #1532: 'EPHA4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
EPHA4 MUTATED 12 2 0 11
EPHA4 WILD-TYPE 118 76 68 185

Figure S4142.  Get High-res Image Gene #1532: 'EPHA4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'EPHA4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0172 (Fisher's exact test), Q value = 0.13

Table S16184.  Gene #1532: 'EPHA4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
EPHA4 MUTATED 3 3 0 2 11 3 1 0 2
EPHA4 WILD-TYPE 37 59 28 78 58 45 42 28 72

Figure S4143.  Get High-res Image Gene #1532: 'EPHA4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'EPHA4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.354 (Fisher's exact test), Q value = 0.68

Table S16185.  Gene #1532: 'EPHA4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
EPHA4 MUTATED 2 1 1 3
EPHA4 WILD-TYPE 31 30 26 16
'EPHA4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.116 (Fisher's exact test), Q value = 0.38

Table S16186.  Gene #1532: 'EPHA4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
EPHA4 MUTATED 1 1 3 2
EPHA4 WILD-TYPE 53 9 21 20
'TMEM195 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0402 (Fisher's exact test), Q value = 0.21

Table S16187.  Gene #1533: 'TMEM195 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
TMEM195 MUTATED 0 1 0 3
TMEM195 WILD-TYPE 46 57 64 40

Figure S4144.  Get High-res Image Gene #1533: 'TMEM195 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'TMEM195 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.678 (Fisher's exact test), Q value = 0.96

Table S16188.  Gene #1533: 'TMEM195 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
TMEM195 MUTATED 0 2 2
TMEM195 WILD-TYPE 51 81 75
'TMEM195 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0231 (Fisher's exact test), Q value = 0.15

Table S16189.  Gene #1533: 'TMEM195 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
TMEM195 MUTATED 8 1 0 0
TMEM195 WILD-TYPE 170 182 101 20

Figure S4145.  Get High-res Image Gene #1533: 'TMEM195 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'TMEM195 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.384 (Fisher's exact test), Q value = 0.71

Table S16190.  Gene #1533: 'TMEM195 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
TMEM195 MUTATED 2 0 3
TMEM195 WILD-TYPE 85 80 97
'TMEM195 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S16191.  Gene #1533: 'TMEM195 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
TMEM195 MUTATED 1 3 3
TMEM195 WILD-TYPE 88 157 135
'TMEM195 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.307 (Fisher's exact test), Q value = 0.64

Table S16192.  Gene #1533: 'TMEM195 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
TMEM195 MUTATED 3 4 0
TMEM195 WILD-TYPE 179 129 72
'TMEM195 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.377 (Fisher's exact test), Q value = 0.71

Table S16193.  Gene #1533: 'TMEM195 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
TMEM195 MUTATED 0 2 2 5
TMEM195 WILD-TYPE 112 94 90 181
'TMEM195 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.178 (Fisher's exact test), Q value = 0.48

Table S16194.  Gene #1533: 'TMEM195 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
TMEM195 MUTATED 1 1 2 0 1 0 4
TMEM195 WILD-TYPE 59 49 47 40 62 125 95
'TMEM195 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.219 (Fisher's exact test), Q value = 0.53

Table S16195.  Gene #1533: 'TMEM195 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
TMEM195 MUTATED 1 1 0 7
TMEM195 WILD-TYPE 129 77 68 189
'TMEM195 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.177 (Fisher's exact test), Q value = 0.48

Table S16196.  Gene #1533: 'TMEM195 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
TMEM195 MUTATED 0 1 2 1 4 0 0 0 1
TMEM195 WILD-TYPE 40 61 26 79 65 48 43 28 73
'AGT MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.065 (Fisher's exact test), Q value = 0.28

Table S16197.  Gene #1534: 'AGT MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
AGT MUTATED 1 0 0 2
AGT WILD-TYPE 45 58 64 41
'AGT MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.187 (Fisher's exact test), Q value = 0.49

Table S16198.  Gene #1534: 'AGT MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
AGT MUTATED 2 0 1
AGT WILD-TYPE 49 83 76
'AGT MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00079 (Fisher's exact test), Q value = 0.021

Table S16199.  Gene #1534: 'AGT MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
AGT MUTATED 10 0 0 0
AGT WILD-TYPE 168 183 101 20

Figure S4146.  Get High-res Image Gene #1534: 'AGT MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'AGT MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.29 (Fisher's exact test), Q value = 0.62

Table S16200.  Gene #1534: 'AGT MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
AGT MUTATED 3 0 3
AGT WILD-TYPE 84 80 97
'AGT MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0747 (Fisher's exact test), Q value = 0.29

Table S16201.  Gene #1534: 'AGT MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
AGT MUTATED 5 2 2
AGT WILD-TYPE 84 158 136
'AGT MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.669 (Fisher's exact test), Q value = 0.95

Table S16202.  Gene #1534: 'AGT MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
AGT MUTATED 3 4 2
AGT WILD-TYPE 179 129 70
'AGT MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.448 (Fisher's exact test), Q value = 0.77

Table S16203.  Gene #1534: 'AGT MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
AGT MUTATED 1 4 1 4
AGT WILD-TYPE 111 92 91 182
'AGT MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0852 (Fisher's exact test), Q value = 0.32

Table S16204.  Gene #1534: 'AGT MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
AGT MUTATED 1 2 3 0 1 0 3
AGT WILD-TYPE 59 48 46 40 62 125 96
'AGT MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.551 (Fisher's exact test), Q value = 0.87

Table S16205.  Gene #1534: 'AGT MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
AGT MUTATED 2 2 0 6
AGT WILD-TYPE 128 76 68 190
'AGT MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.191 (Fisher's exact test), Q value = 0.49

Table S16206.  Gene #1534: 'AGT MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
AGT MUTATED 0 2 0 1 5 0 0 1 1
AGT WILD-TYPE 40 60 28 79 64 48 43 27 73
'AGT MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0827 (Fisher's exact test), Q value = 0.31

Table S16207.  Gene #1534: 'AGT MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
AGT MUTATED 0 1 0 2
AGT WILD-TYPE 33 30 27 17
'AGT MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.314 (Fisher's exact test), Q value = 0.64

Table S16208.  Gene #1534: 'AGT MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
AGT MUTATED 1 1 1 0
AGT WILD-TYPE 53 9 23 22
'ARHGEF11 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0097 (Fisher's exact test), Q value = 0.094

Table S16209.  Gene #1535: 'ARHGEF11 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ARHGEF11 MUTATED 6 2 0 3
ARHGEF11 WILD-TYPE 40 56 64 40

Figure S4147.  Get High-res Image Gene #1535: 'ARHGEF11 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'ARHGEF11 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0759 (Fisher's exact test), Q value = 0.3

Table S16210.  Gene #1535: 'ARHGEF11 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ARHGEF11 MUTATED 6 3 2
ARHGEF11 WILD-TYPE 45 80 75
'ARHGEF11 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00838 (Fisher's exact test), Q value = 0.085

Table S16211.  Gene #1535: 'ARHGEF11 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ARHGEF11 MUTATED 16 3 3 1
ARHGEF11 WILD-TYPE 162 180 98 19

Figure S4148.  Get High-res Image Gene #1535: 'ARHGEF11 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ARHGEF11 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.533 (Fisher's exact test), Q value = 0.85

Table S16212.  Gene #1535: 'ARHGEF11 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ARHGEF11 MUTATED 4 2 6
ARHGEF11 WILD-TYPE 83 78 94
'ARHGEF11 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.396 (Fisher's exact test), Q value = 0.72

Table S16213.  Gene #1535: 'ARHGEF11 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ARHGEF11 MUTATED 2 8 9
ARHGEF11 WILD-TYPE 87 152 129
'ARHGEF11 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.953 (Fisher's exact test), Q value = 1

Table S16214.  Gene #1535: 'ARHGEF11 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ARHGEF11 MUTATED 10 6 3
ARHGEF11 WILD-TYPE 172 127 69
'ARHGEF11 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.646 (Fisher's exact test), Q value = 0.93

Table S16215.  Gene #1535: 'ARHGEF11 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ARHGEF11 MUTATED 3 6 5 9
ARHGEF11 WILD-TYPE 109 90 87 177
'ARHGEF11 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0486 (Fisher's exact test), Q value = 0.24

Table S16216.  Gene #1535: 'ARHGEF11 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ARHGEF11 MUTATED 2 0 6 3 2 3 7
ARHGEF11 WILD-TYPE 58 50 43 37 61 122 92

Figure S4149.  Get High-res Image Gene #1535: 'ARHGEF11 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ARHGEF11 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.494 (Fisher's exact test), Q value = 0.82

Table S16217.  Gene #1535: 'ARHGEF11 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ARHGEF11 MUTATED 7 3 1 12
ARHGEF11 WILD-TYPE 123 75 67 184
'ARHGEF11 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0684 (Fisher's exact test), Q value = 0.28

Table S16218.  Gene #1535: 'ARHGEF11 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ARHGEF11 MUTATED 2 3 1 3 8 1 4 1 0
ARHGEF11 WILD-TYPE 38 59 27 77 61 47 39 27 74
'ARHGEF11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.119 (Fisher's exact test), Q value = 0.38

Table S16219.  Gene #1535: 'ARHGEF11 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
ARHGEF11 MUTATED 2 1 0 3
ARHGEF11 WILD-TYPE 31 30 27 16
'ARHGEF11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S16220.  Gene #1535: 'ARHGEF11 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
ARHGEF11 MUTATED 4 0 1 1
ARHGEF11 WILD-TYPE 50 10 23 21
'MRPS22 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.486 (Fisher's exact test), Q value = 0.81

Table S16221.  Gene #1536: 'MRPS22 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
MRPS22 MUTATED 6 2 2 0
MRPS22 WILD-TYPE 172 181 99 20
'MRPS22 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.446 (Fisher's exact test), Q value = 0.77

Table S16222.  Gene #1536: 'MRPS22 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
MRPS22 MUTATED 1 3 4
MRPS22 WILD-TYPE 86 77 96
'MRPS22 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.212 (Fisher's exact test), Q value = 0.52

Table S16223.  Gene #1536: 'MRPS22 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
MRPS22 MUTATED 0 4 5
MRPS22 WILD-TYPE 89 156 133
'MRPS22 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.364 (Fisher's exact test), Q value = 0.69

Table S16224.  Gene #1536: 'MRPS22 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
MRPS22 MUTATED 6 3 0
MRPS22 WILD-TYPE 176 130 72
'MRPS22 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.309 (Fisher's exact test), Q value = 0.64

Table S16225.  Gene #1536: 'MRPS22 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
MRPS22 MUTATED 3 4 1 2
MRPS22 WILD-TYPE 109 92 91 184
'MRPS22 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0336 (Fisher's exact test), Q value = 0.19

Table S16226.  Gene #1536: 'MRPS22 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
MRPS22 MUTATED 2 1 4 0 1 0 2
MRPS22 WILD-TYPE 58 49 45 40 62 125 97

Figure S4150.  Get High-res Image Gene #1536: 'MRPS22 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'MRPS22 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.265 (Fisher's exact test), Q value = 0.59

Table S16227.  Gene #1536: 'MRPS22 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
MRPS22 MUTATED 5 1 2 2
MRPS22 WILD-TYPE 125 77 66 194
'MRPS22 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0502 (Fisher's exact test), Q value = 0.24

Table S16228.  Gene #1536: 'MRPS22 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
MRPS22 MUTATED 2 1 1 0 4 0 2 0 0
MRPS22 WILD-TYPE 38 61 27 80 65 48 41 28 74
'TMEM229B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.34 (Fisher's exact test), Q value = 0.67

Table S16229.  Gene #1537: 'TMEM229B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
TMEM229B MUTATED 3 0 1 0
TMEM229B WILD-TYPE 175 183 100 20
'TMEM229B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S16230.  Gene #1537: 'TMEM229B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
TMEM229B MUTATED 1 1 2
TMEM229B WILD-TYPE 86 79 98
'TMEM229B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.207 (Fisher's exact test), Q value = 0.51

Table S16231.  Gene #1537: 'TMEM229B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
TMEM229B MUTATED 2 1 1 0
TMEM229B WILD-TYPE 110 95 91 186
'TMEM229B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.439 (Fisher's exact test), Q value = 0.77

Table S16232.  Gene #1537: 'TMEM229B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
TMEM229B MUTATED 0 1 1 0 1 0 1
TMEM229B WILD-TYPE 60 49 48 40 62 125 98
'TMEM229B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.6 (Fisher's exact test), Q value = 0.9

Table S16233.  Gene #1537: 'TMEM229B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
TMEM229B MUTATED 2 1 0 1
TMEM229B WILD-TYPE 128 77 68 195
'TMEM229B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.197 (Fisher's exact test), Q value = 0.5

Table S16234.  Gene #1537: 'TMEM229B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
TMEM229B MUTATED 2 1 0 0 1 0 0 0 0
TMEM229B WILD-TYPE 38 61 28 80 68 48 43 28 74
'ABCG2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0616 (Fisher's exact test), Q value = 0.27

Table S16235.  Gene #1538: 'ABCG2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ABCG2 MUTATED 3 1 0 3
ABCG2 WILD-TYPE 43 57 64 40
'ABCG2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.545 (Fisher's exact test), Q value = 0.86

Table S16236.  Gene #1538: 'ABCG2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ABCG2 MUTATED 3 2 2
ABCG2 WILD-TYPE 48 81 75
'ABCG2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0276 (Fisher's exact test), Q value = 0.17

Table S16237.  Gene #1538: 'ABCG2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ABCG2 MUTATED 9 1 5 0
ABCG2 WILD-TYPE 169 182 96 20

Figure S4151.  Get High-res Image Gene #1538: 'ABCG2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ABCG2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.446 (Fisher's exact test), Q value = 0.77

Table S16238.  Gene #1538: 'ABCG2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ABCG2 MUTATED 1 3 4
ABCG2 WILD-TYPE 86 77 96
'ABCG2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.018 (Fisher's exact test), Q value = 0.13

Table S16239.  Gene #1538: 'ABCG2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ABCG2 MUTATED 0 4 9
ABCG2 WILD-TYPE 89 156 129

Figure S4152.  Get High-res Image Gene #1538: 'ABCG2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'ABCG2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.215 (Fisher's exact test), Q value = 0.52

Table S16240.  Gene #1538: 'ABCG2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ABCG2 MUTATED 8 5 0
ABCG2 WILD-TYPE 174 128 72
'ABCG2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.584 (Fisher's exact test), Q value = 0.89

Table S16241.  Gene #1538: 'ABCG2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ABCG2 MUTATED 4 1 4 6
ABCG2 WILD-TYPE 108 95 88 180
'ABCG2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.208 (Fisher's exact test), Q value = 0.51

Table S16242.  Gene #1538: 'ABCG2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ABCG2 MUTATED 4 1 2 0 2 1 5
ABCG2 WILD-TYPE 56 49 47 40 61 124 94
'ABCG2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S16243.  Gene #1538: 'ABCG2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ABCG2 MUTATED 4 2 2 6
ABCG2 WILD-TYPE 126 76 66 190
'ABCG2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0675 (Fisher's exact test), Q value = 0.28

Table S16244.  Gene #1538: 'ABCG2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ABCG2 MUTATED 0 2 3 1 3 1 3 1 0
ABCG2 WILD-TYPE 40 60 25 79 66 47 40 27 74
'ABCG2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.168 (Fisher's exact test), Q value = 0.46

Table S16245.  Gene #1538: 'ABCG2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
ABCG2 MUTATED 0 1 3 1
ABCG2 WILD-TYPE 33 30 24 18
'ABCG2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0683 (Fisher's exact test), Q value = 0.28

Table S16246.  Gene #1538: 'ABCG2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
ABCG2 MUTATED 1 1 3 0
ABCG2 WILD-TYPE 53 9 21 22
'TMEM168 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00592 (Fisher's exact test), Q value = 0.07

Table S16247.  Gene #1539: 'TMEM168 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
TMEM168 MUTATED 2 0 0 4
TMEM168 WILD-TYPE 44 58 64 39

Figure S4153.  Get High-res Image Gene #1539: 'TMEM168 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'TMEM168 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.579 (Fisher's exact test), Q value = 0.88

Table S16248.  Gene #1539: 'TMEM168 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
TMEM168 MUTATED 2 1 3
TMEM168 WILD-TYPE 49 82 74
'TMEM168 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00066 (Fisher's exact test), Q value = 0.019

Table S16249.  Gene #1539: 'TMEM168 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
TMEM168 MUTATED 14 2 0 0
TMEM168 WILD-TYPE 164 181 101 20

Figure S4154.  Get High-res Image Gene #1539: 'TMEM168 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'TMEM168 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.438 (Fisher's exact test), Q value = 0.76

Table S16250.  Gene #1539: 'TMEM168 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
TMEM168 MUTATED 3 1 5
TMEM168 WILD-TYPE 84 79 95
'TMEM168 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S16251.  Gene #1539: 'TMEM168 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
TMEM168 MUTATED 3 6 5
TMEM168 WILD-TYPE 86 154 133
'TMEM168 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.936 (Fisher's exact test), Q value = 1

Table S16252.  Gene #1539: 'TMEM168 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
TMEM168 MUTATED 6 5 3
TMEM168 WILD-TYPE 176 128 69
'TMEM168 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.199 (Fisher's exact test), Q value = 0.5

Table S16253.  Gene #1539: 'TMEM168 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
TMEM168 MUTATED 1 6 3 6
TMEM168 WILD-TYPE 111 90 89 180
'TMEM168 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.293 (Fisher's exact test), Q value = 0.62

Table S16254.  Gene #1539: 'TMEM168 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
TMEM168 MUTATED 2 1 3 1 2 1 6
TMEM168 WILD-TYPE 58 49 46 39 61 124 93
'TMEM168 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.863 (Fisher's exact test), Q value = 1

Table S16255.  Gene #1539: 'TMEM168 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
TMEM168 MUTATED 3 3 2 8
TMEM168 WILD-TYPE 127 75 66 188
'TMEM168 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0544 (Fisher's exact test), Q value = 0.25

Table S16256.  Gene #1539: 'TMEM168 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
TMEM168 MUTATED 1 3 3 1 6 0 1 0 1
TMEM168 WILD-TYPE 39 59 25 79 63 48 42 28 73
'NUDT15 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.12 (Fisher's exact test), Q value = 0.39

Table S16257.  Gene #1540: 'NUDT15 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
NUDT15 MUTATED 4 0 0 0
NUDT15 WILD-TYPE 174 183 101 20
'NUDT15 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.795 (Fisher's exact test), Q value = 1

Table S16258.  Gene #1540: 'NUDT15 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
NUDT15 MUTATED 0 2 1
NUDT15 WILD-TYPE 89 158 137
'NUDT15 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S16259.  Gene #1540: 'NUDT15 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
NUDT15 MUTATED 2 1 0
NUDT15 WILD-TYPE 180 132 72
'NUDT15 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.761 (Fisher's exact test), Q value = 1

Table S16260.  Gene #1540: 'NUDT15 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
NUDT15 MUTATED 0 1 1 2
NUDT15 WILD-TYPE 112 95 91 184
'NUDT15 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.184 (Fisher's exact test), Q value = 0.48

Table S16261.  Gene #1540: 'NUDT15 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
NUDT15 MUTATED 1 0 2 0 0 1 0
NUDT15 WILD-TYPE 59 50 47 40 63 124 99
'NUDT15 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S16262.  Gene #1540: 'NUDT15 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
NUDT15 MUTATED 1 1 0 2
NUDT15 WILD-TYPE 129 77 68 194
'NUDT15 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.886 (Fisher's exact test), Q value = 1

Table S16263.  Gene #1540: 'NUDT15 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
NUDT15 MUTATED 1 1 0 1 1 0 0 0 0
NUDT15 WILD-TYPE 39 61 28 79 68 48 43 28 74
'PANK1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0651 (Fisher's exact test), Q value = 0.28

Table S16264.  Gene #1541: 'PANK1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
PANK1 MUTATED 1 0 0 2
PANK1 WILD-TYPE 45 58 64 41
'PANK1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.254 (Fisher's exact test), Q value = 0.58

Table S16265.  Gene #1541: 'PANK1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
PANK1 MUTATED 2 1 0
PANK1 WILD-TYPE 49 82 77
'PANK1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0102 (Fisher's exact test), Q value = 0.097

Table S16266.  Gene #1541: 'PANK1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
PANK1 MUTATED 7 0 0 0
PANK1 WILD-TYPE 171 183 101 20

Figure S4155.  Get High-res Image Gene #1541: 'PANK1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'PANK1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.195 (Fisher's exact test), Q value = 0.5

Table S16267.  Gene #1541: 'PANK1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
PANK1 MUTATED 1 0 4
PANK1 WILD-TYPE 86 80 96
'PANK1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.618 (Fisher's exact test), Q value = 0.92

Table S16268.  Gene #1541: 'PANK1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
PANK1 MUTATED 1 2 4
PANK1 WILD-TYPE 88 158 134
'PANK1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.774 (Fisher's exact test), Q value = 1

Table S16269.  Gene #1541: 'PANK1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
PANK1 MUTATED 3 2 2
PANK1 WILD-TYPE 179 131 70
'PANK1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0527 (Fisher's exact test), Q value = 0.25

Table S16270.  Gene #1541: 'PANK1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
PANK1 MUTATED 0 4 0 3
PANK1 WILD-TYPE 112 92 92 183
'PANK1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0928 (Fisher's exact test), Q value = 0.33

Table S16271.  Gene #1541: 'PANK1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
PANK1 MUTATED 0 1 2 1 0 0 3
PANK1 WILD-TYPE 60 49 47 39 63 125 96
'PANK1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.636 (Fisher's exact test), Q value = 0.93

Table S16272.  Gene #1541: 'PANK1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
PANK1 MUTATED 2 0 0 4
PANK1 WILD-TYPE 128 78 68 192
'PANK1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.703 (Fisher's exact test), Q value = 0.97

Table S16273.  Gene #1541: 'PANK1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
PANK1 MUTATED 1 0 1 1 2 0 0 0 1
PANK1 WILD-TYPE 39 62 27 79 67 48 43 28 73
'SYT14 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.204 (Fisher's exact test), Q value = 0.51

Table S16274.  Gene #1542: 'SYT14 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
SYT14 MUTATED 2 0 2 3
SYT14 WILD-TYPE 44 58 62 40
'SYT14 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.548 (Fisher's exact test), Q value = 0.87

Table S16275.  Gene #1542: 'SYT14 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
SYT14 MUTATED 3 2 2
SYT14 WILD-TYPE 48 81 75
'SYT14 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0536 (Fisher's exact test), Q value = 0.25

Table S16276.  Gene #1542: 'SYT14 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
SYT14 MUTATED 11 3 1 0
SYT14 WILD-TYPE 167 180 100 20
'SYT14 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.764 (Fisher's exact test), Q value = 1

Table S16277.  Gene #1542: 'SYT14 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
SYT14 MUTATED 4 2 3
SYT14 WILD-TYPE 83 78 97
'SYT14 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S16278.  Gene #1542: 'SYT14 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
SYT14 MUTATED 3 5 4
SYT14 WILD-TYPE 86 155 134
'SYT14 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.742 (Fisher's exact test), Q value = 1

Table S16279.  Gene #1542: 'SYT14 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
SYT14 MUTATED 6 5 1
SYT14 WILD-TYPE 176 128 71
'SYT14 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.67 (Fisher's exact test), Q value = 0.95

Table S16280.  Gene #1542: 'SYT14 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
SYT14 MUTATED 2 2 4 7
SYT14 WILD-TYPE 110 94 88 179
'SYT14 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.76 (Fisher's exact test), Q value = 1

Table S16281.  Gene #1542: 'SYT14 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
SYT14 MUTATED 1 2 3 2 1 3 3
SYT14 WILD-TYPE 59 48 46 38 62 122 96
'SYT14 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S16282.  Gene #1542: 'SYT14 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
SYT14 MUTATED 4 2 2 7
SYT14 WILD-TYPE 126 76 66 189
'SYT14 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.625 (Fisher's exact test), Q value = 0.92

Table S16283.  Gene #1542: 'SYT14 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
SYT14 MUTATED 0 3 2 2 2 1 3 0 2
SYT14 WILD-TYPE 40 59 26 78 67 47 40 28 72
'SYT14 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.699 (Fisher's exact test), Q value = 0.97

Table S16284.  Gene #1542: 'SYT14 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
SYT14 MUTATED 2 1 0 1
SYT14 WILD-TYPE 31 30 27 18
'SYT14 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.763 (Fisher's exact test), Q value = 1

Table S16285.  Gene #1542: 'SYT14 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
SYT14 MUTATED 3 0 0 1
SYT14 WILD-TYPE 51 10 24 21
'ARHGAP25 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.785 (Fisher's exact test), Q value = 1

Table S16286.  Gene #1543: 'ARHGAP25 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ARHGAP25 MUTATED 1 0 1 1
ARHGAP25 WILD-TYPE 45 58 63 42
'ARHGAP25 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.35 (Fisher's exact test), Q value = 0.68

Table S16287.  Gene #1543: 'ARHGAP25 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ARHGAP25 MUTATED 1 0 2
ARHGAP25 WILD-TYPE 50 83 75
'ARHGAP25 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.568 (Fisher's exact test), Q value = 0.88

Table S16288.  Gene #1543: 'ARHGAP25 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ARHGAP25 MUTATED 7 3 2 0
ARHGAP25 WILD-TYPE 171 180 99 20
'ARHGAP25 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0328 (Fisher's exact test), Q value = 0.18

Table S16289.  Gene #1543: 'ARHGAP25 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ARHGAP25 MUTATED 5 3 0
ARHGAP25 WILD-TYPE 82 77 100

Figure S4156.  Get High-res Image Gene #1543: 'ARHGAP25 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'ARHGAP25 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0261 (Fisher's exact test), Q value = 0.16

Table S16290.  Gene #1543: 'ARHGAP25 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ARHGAP25 MUTATED 0 3 8
ARHGAP25 WILD-TYPE 89 157 130

Figure S4157.  Get High-res Image Gene #1543: 'ARHGAP25 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'ARHGAP25 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.784 (Fisher's exact test), Q value = 1

Table S16291.  Gene #1543: 'ARHGAP25 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ARHGAP25 MUTATED 5 5 1
ARHGAP25 WILD-TYPE 177 128 71
'ARHGAP25 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.536 (Fisher's exact test), Q value = 0.86

Table S16292.  Gene #1543: 'ARHGAP25 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ARHGAP25 MUTATED 3 1 4 4
ARHGAP25 WILD-TYPE 109 95 88 182
'ARHGAP25 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.245 (Fisher's exact test), Q value = 0.57

Table S16293.  Gene #1543: 'ARHGAP25 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ARHGAP25 MUTATED 4 2 1 0 2 1 2
ARHGAP25 WILD-TYPE 56 48 48 40 61 124 97
'ARHGAP25 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.951 (Fisher's exact test), Q value = 1

Table S16294.  Gene #1543: 'ARHGAP25 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ARHGAP25 MUTATED 4 2 1 5
ARHGAP25 WILD-TYPE 126 76 67 191
'ARHGAP25 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.379 (Fisher's exact test), Q value = 0.71

Table S16295.  Gene #1543: 'ARHGAP25 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ARHGAP25 MUTATED 0 4 1 1 3 2 0 0 1
ARHGAP25 WILD-TYPE 40 58 27 79 66 46 43 28 73
'ARHGAP25 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.357 (Fisher's exact test), Q value = 0.69

Table S16296.  Gene #1543: 'ARHGAP25 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
ARHGAP25 MUTATED 1 1 0 2
ARHGAP25 WILD-TYPE 32 30 27 17
'ARHGAP25 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.149 (Fisher's exact test), Q value = 0.43

Table S16297.  Gene #1543: 'ARHGAP25 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
ARHGAP25 MUTATED 1 1 0 2
ARHGAP25 WILD-TYPE 53 9 24 20
'HCFC1R1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.385 (Fisher's exact test), Q value = 0.71

Table S16298.  Gene #1544: 'HCFC1R1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
HCFC1R1 MUTATED 4 1 0 0
HCFC1R1 WILD-TYPE 174 182 101 20
'HCFC1R1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S16299.  Gene #1544: 'HCFC1R1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
HCFC1R1 MUTATED 1 1 2
HCFC1R1 WILD-TYPE 86 79 98
'HCFC1R1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.372 (Fisher's exact test), Q value = 0.7

Table S16300.  Gene #1544: 'HCFC1R1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
HCFC1R1 MUTATED 0 2 3
HCFC1R1 WILD-TYPE 89 158 135
'HCFC1R1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.715 (Fisher's exact test), Q value = 0.99

Table S16301.  Gene #1544: 'HCFC1R1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
HCFC1R1 MUTATED 3 2 0
HCFC1R1 WILD-TYPE 179 131 72
'HCFC1R1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.602 (Fisher's exact test), Q value = 0.9

Table S16302.  Gene #1544: 'HCFC1R1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
HCFC1R1 MUTATED 1 2 1 1
HCFC1R1 WILD-TYPE 111 94 91 185
'HCFC1R1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0217 (Fisher's exact test), Q value = 0.15

Table S16303.  Gene #1544: 'HCFC1R1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
HCFC1R1 MUTATED 0 1 3 0 0 0 1
HCFC1R1 WILD-TYPE 60 49 46 40 63 125 98

Figure S4158.  Get High-res Image Gene #1544: 'HCFC1R1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'HCFC1R1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.631 (Fisher's exact test), Q value = 0.93

Table S16304.  Gene #1544: 'HCFC1R1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
HCFC1R1 MUTATED 2 1 1 1
HCFC1R1 WILD-TYPE 128 77 67 195
'HCFC1R1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.257 (Fisher's exact test), Q value = 0.58

Table S16305.  Gene #1544: 'HCFC1R1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
HCFC1R1 MUTATED 1 1 0 0 1 0 2 0 0
HCFC1R1 WILD-TYPE 39 61 28 80 68 48 41 28 74
'C7ORF66 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.593 (Fisher's exact test), Q value = 0.9

Table S16306.  Gene #1545: 'C7ORF66 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
C7ORF66 MUTATED 5 2 1 0
C7ORF66 WILD-TYPE 173 181 100 20
'C7ORF66 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.637 (Fisher's exact test), Q value = 0.93

Table S16307.  Gene #1545: 'C7ORF66 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
C7ORF66 MUTATED 2 1 4
C7ORF66 WILD-TYPE 85 79 96
'C7ORF66 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0781 (Fisher's exact test), Q value = 0.3

Table S16308.  Gene #1545: 'C7ORF66 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
C7ORF66 MUTATED 0 1 5
C7ORF66 WILD-TYPE 89 159 133
'C7ORF66 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.339 (Fisher's exact test), Q value = 0.67

Table S16309.  Gene #1545: 'C7ORF66 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
C7ORF66 MUTATED 5 1 0
C7ORF66 WILD-TYPE 177 132 72
'C7ORF66 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0282 (Fisher's exact test), Q value = 0.17

Table S16310.  Gene #1545: 'C7ORF66 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
C7ORF66 MUTATED 1 1 5 1
C7ORF66 WILD-TYPE 111 95 87 185

Figure S4159.  Get High-res Image Gene #1545: 'C7ORF66 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'C7ORF66 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0495 (Fisher's exact test), Q value = 0.24

Table S16311.  Gene #1545: 'C7ORF66 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
C7ORF66 MUTATED 2 0 3 0 2 1 0
C7ORF66 WILD-TYPE 58 50 46 40 61 124 99

Figure S4160.  Get High-res Image Gene #1545: 'C7ORF66 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'C7ORF66 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00991 (Fisher's exact test), Q value = 0.095

Table S16312.  Gene #1545: 'C7ORF66 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
C7ORF66 MUTATED 2 5 0 1
C7ORF66 WILD-TYPE 128 73 68 195

Figure S4161.  Get High-res Image Gene #1545: 'C7ORF66 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'C7ORF66 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.289 (Fisher's exact test), Q value = 0.62

Table S16313.  Gene #1545: 'C7ORF66 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
C7ORF66 MUTATED 0 4 0 1 1 1 1 0 0
C7ORF66 WILD-TYPE 40 58 28 79 68 47 42 28 74
'C7ORF66 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.703 (Fisher's exact test), Q value = 0.97

Table S16314.  Gene #1545: 'C7ORF66 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
C7ORF66 MUTATED 2 1 0 0
C7ORF66 WILD-TYPE 31 30 27 19
'C7ORF66 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.565 (Fisher's exact test), Q value = 0.87

Table S16315.  Gene #1545: 'C7ORF66 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
C7ORF66 MUTATED 3 0 0 0
C7ORF66 WILD-TYPE 51 10 24 22
'CD47 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.756 (Fisher's exact test), Q value = 1

Table S16316.  Gene #1546: 'CD47 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
CD47 MUTATED 4 2 2 0
CD47 WILD-TYPE 174 181 99 20
'CD47 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.864 (Fisher's exact test), Q value = 1

Table S16317.  Gene #1546: 'CD47 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
CD47 MUTATED 1 2 2
CD47 WILD-TYPE 86 78 98
'CD47 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.615 (Fisher's exact test), Q value = 0.91

Table S16318.  Gene #1546: 'CD47 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
CD47 MUTATED 1 2 4
CD47 WILD-TYPE 88 158 134
'CD47 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.885 (Fisher's exact test), Q value = 1

Table S16319.  Gene #1546: 'CD47 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
CD47 MUTATED 3 3 1
CD47 WILD-TYPE 179 130 71
'CD47 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.927 (Fisher's exact test), Q value = 1

Table S16320.  Gene #1546: 'CD47 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
CD47 MUTATED 2 1 2 3
CD47 WILD-TYPE 110 95 90 183
'CD47 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.135 (Fisher's exact test), Q value = 0.41

Table S16321.  Gene #1546: 'CD47 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
CD47 MUTATED 0 2 1 0 2 0 3
CD47 WILD-TYPE 60 48 48 40 61 125 96
'CD47 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.635 (Fisher's exact test), Q value = 0.93

Table S16322.  Gene #1546: 'CD47 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
CD47 MUTATED 3 2 0 3
CD47 WILD-TYPE 127 76 68 193
'CD47 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0517 (Fisher's exact test), Q value = 0.25

Table S16323.  Gene #1546: 'CD47 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
CD47 MUTATED 1 2 2 0 3 0 0 0 0
CD47 WILD-TYPE 39 60 26 80 66 48 43 28 74
'RWDD4A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.386 (Fisher's exact test), Q value = 0.71

Table S16324.  Gene #1547: 'RWDD4A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
RWDD4A MUTATED 4 1 0 0
RWDD4A WILD-TYPE 174 182 101 20
'RWDD4A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.153 (Fisher's exact test), Q value = 0.44

Table S16325.  Gene #1547: 'RWDD4A MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
RWDD4A MUTATED 3 1 0
RWDD4A WILD-TYPE 84 79 100
'RWDD4A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S16326.  Gene #1547: 'RWDD4A MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
RWDD4A MUTATED 1 2 1
RWDD4A WILD-TYPE 88 158 137
'RWDD4A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.828 (Fisher's exact test), Q value = 1

Table S16327.  Gene #1547: 'RWDD4A MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
RWDD4A MUTATED 2 2 0
RWDD4A WILD-TYPE 180 131 72
'RWDD4A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.226 (Fisher's exact test), Q value = 0.54

Table S16328.  Gene #1547: 'RWDD4A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
RWDD4A MUTATED 3 0 0 2
RWDD4A WILD-TYPE 109 96 92 184
'RWDD4A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.203 (Fisher's exact test), Q value = 0.51

Table S16329.  Gene #1547: 'RWDD4A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
RWDD4A MUTATED 2 1 0 0 0 0 2
RWDD4A WILD-TYPE 58 49 49 40 63 125 97
'RWDD4A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.438 (Fisher's exact test), Q value = 0.77

Table S16330.  Gene #1547: 'RWDD4A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
RWDD4A MUTATED 1 0 2 2
RWDD4A WILD-TYPE 129 78 66 194
'RWDD4A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0992 (Fisher's exact test), Q value = 0.35

Table S16331.  Gene #1547: 'RWDD4A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
RWDD4A MUTATED 0 0 0 0 0 2 2 0 1
RWDD4A WILD-TYPE 40 62 28 80 69 46 41 28 73
'RWDD4A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.11 (Fisher's exact test), Q value = 0.37

Table S16332.  Gene #1547: 'RWDD4A MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
RWDD4A MUTATED 3 0 0 0
RWDD4A WILD-TYPE 30 31 27 19
'RWDD4A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.843 (Fisher's exact test), Q value = 1

Table S16333.  Gene #1547: 'RWDD4A MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
RWDD4A MUTATED 2 0 0 1
RWDD4A WILD-TYPE 52 10 24 21
'EPRS MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.018 (Fisher's exact test), Q value = 0.13

Table S16334.  Gene #1548: 'EPRS MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
EPRS MUTATED 4 0 1 4
EPRS WILD-TYPE 42 58 63 39

Figure S4162.  Get High-res Image Gene #1548: 'EPRS MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'EPRS MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0738 (Fisher's exact test), Q value = 0.29

Table S16335.  Gene #1548: 'EPRS MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
EPRS MUTATED 5 3 1
EPRS WILD-TYPE 46 80 76
'EPRS MUTATION STATUS' versus 'CN_CNMF'

P value = 0.104 (Fisher's exact test), Q value = 0.36

Table S16336.  Gene #1548: 'EPRS MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
EPRS MUTATED 14 5 3 1
EPRS WILD-TYPE 164 178 98 19
'EPRS MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.453 (Fisher's exact test), Q value = 0.78

Table S16337.  Gene #1548: 'EPRS MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
EPRS MUTATED 6 2 6
EPRS WILD-TYPE 81 78 94
'EPRS MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.614 (Fisher's exact test), Q value = 0.91

Table S16338.  Gene #1548: 'EPRS MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
EPRS MUTATED 2 7 7
EPRS WILD-TYPE 87 153 131
'EPRS MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.498 (Fisher's exact test), Q value = 0.82

Table S16339.  Gene #1548: 'EPRS MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
EPRS MUTATED 6 8 2
EPRS WILD-TYPE 176 125 70
'EPRS MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.99 (Fisher's exact test), Q value = 1

Table S16340.  Gene #1548: 'EPRS MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
EPRS MUTATED 6 4 4 9
EPRS WILD-TYPE 106 92 88 177
'EPRS MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.273 (Fisher's exact test), Q value = 0.6

Table S16341.  Gene #1548: 'EPRS MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
EPRS MUTATED 5 2 4 2 2 2 6
EPRS WILD-TYPE 55 48 45 38 61 123 93
'EPRS MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.542 (Fisher's exact test), Q value = 0.86

Table S16342.  Gene #1548: 'EPRS MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
EPRS MUTATED 6 5 1 10
EPRS WILD-TYPE 124 73 67 186
'EPRS MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.325 (Fisher's exact test), Q value = 0.65

Table S16343.  Gene #1548: 'EPRS MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
EPRS MUTATED 4 3 2 2 6 2 1 1 1
EPRS WILD-TYPE 36 59 26 78 63 46 42 27 73
'EPRS MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.256 (Fisher's exact test), Q value = 0.58

Table S16344.  Gene #1548: 'EPRS MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
EPRS MUTATED 2 0 0 1
EPRS WILD-TYPE 31 31 27 18
'EPRS MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.841 (Fisher's exact test), Q value = 1

Table S16345.  Gene #1548: 'EPRS MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
EPRS MUTATED 2 0 0 1
EPRS WILD-TYPE 52 10 24 21
'DUSP9 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.244 (Fisher's exact test), Q value = 0.57

Table S16346.  Gene #1549: 'DUSP9 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
DUSP9 MUTATED 6 3 0 0
DUSP9 WILD-TYPE 172 180 101 20
'DUSP9 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.738 (Fisher's exact test), Q value = 1

Table S16347.  Gene #1549: 'DUSP9 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
DUSP9 MUTATED 3 3 2
DUSP9 WILD-TYPE 84 77 98
'DUSP9 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.153 (Fisher's exact test), Q value = 0.44

Table S16348.  Gene #1549: 'DUSP9 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
DUSP9 MUTATED 2 1 5
DUSP9 WILD-TYPE 87 159 133
'DUSP9 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0328 (Fisher's exact test), Q value = 0.19

Table S16349.  Gene #1549: 'DUSP9 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
DUSP9 MUTATED 7 0 1
DUSP9 WILD-TYPE 175 133 71

Figure S4163.  Get High-res Image Gene #1549: 'DUSP9 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'DUSP9 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.187 (Fisher's exact test), Q value = 0.49

Table S16350.  Gene #1549: 'DUSP9 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
DUSP9 MUTATED 2 3 3 1
DUSP9 WILD-TYPE 110 93 89 185
'DUSP9 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0395 (Fisher's exact test), Q value = 0.21

Table S16351.  Gene #1549: 'DUSP9 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
DUSP9 MUTATED 1 1 3 0 3 0 1
DUSP9 WILD-TYPE 59 49 46 40 60 125 98

Figure S4164.  Get High-res Image Gene #1549: 'DUSP9 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'DUSP9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0279 (Fisher's exact test), Q value = 0.17

Table S16352.  Gene #1549: 'DUSP9 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
DUSP9 MUTATED 2 5 0 2
DUSP9 WILD-TYPE 128 73 68 194

Figure S4165.  Get High-res Image Gene #1549: 'DUSP9 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'DUSP9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0932 (Fisher's exact test), Q value = 0.33

Table S16353.  Gene #1549: 'DUSP9 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
DUSP9 MUTATED 2 3 0 0 3 0 1 0 0
DUSP9 WILD-TYPE 38 59 28 80 66 48 42 28 74
'DUSP9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.555 (Fisher's exact test), Q value = 0.87

Table S16354.  Gene #1549: 'DUSP9 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
DUSP9 MUTATED 1 2 0 0
DUSP9 WILD-TYPE 32 29 27 19
'DUSP9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.379 (Fisher's exact test), Q value = 0.71

Table S16355.  Gene #1549: 'DUSP9 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
DUSP9 MUTATED 2 1 0 0
DUSP9 WILD-TYPE 52 9 24 22
'HIST1H1A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0191 (Fisher's exact test), Q value = 0.14

Table S16356.  Gene #1550: 'HIST1H1A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
HIST1H1A MUTATED 7 1 0 1
HIST1H1A WILD-TYPE 171 182 101 19

Figure S4166.  Get High-res Image Gene #1550: 'HIST1H1A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'HIST1H1A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.877 (Fisher's exact test), Q value = 1

Table S16357.  Gene #1550: 'HIST1H1A MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
HIST1H1A MUTATED 2 1 3
HIST1H1A WILD-TYPE 85 79 97
'HIST1H1A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.91 (Fisher's exact test), Q value = 1

Table S16358.  Gene #1550: 'HIST1H1A MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
HIST1H1A MUTATED 2 3 4
HIST1H1A WILD-TYPE 87 157 134
'HIST1H1A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.211 (Fisher's exact test), Q value = 0.52

Table S16359.  Gene #1550: 'HIST1H1A MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
HIST1H1A MUTATED 2 4 3
HIST1H1A WILD-TYPE 180 129 69
'HIST1H1A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0859 (Fisher's exact test), Q value = 0.32

Table S16360.  Gene #1550: 'HIST1H1A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
HIST1H1A MUTATED 1 5 1 2
HIST1H1A WILD-TYPE 111 91 91 184
'HIST1H1A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0811 (Fisher's exact test), Q value = 0.31

Table S16361.  Gene #1550: 'HIST1H1A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
HIST1H1A MUTATED 2 2 2 0 0 0 3
HIST1H1A WILD-TYPE 58 48 47 40 63 125 96
'HIST1H1A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.583 (Fisher's exact test), Q value = 0.89

Table S16362.  Gene #1550: 'HIST1H1A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
HIST1H1A MUTATED 1 1 1 6
HIST1H1A WILD-TYPE 129 77 67 190
'HIST1H1A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.112 (Fisher's exact test), Q value = 0.37

Table S16363.  Gene #1550: 'HIST1H1A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
HIST1H1A MUTATED 2 0 0 0 4 0 1 0 2
HIST1H1A WILD-TYPE 38 62 28 80 65 48 42 28 72
'ZSCAN20 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.183 (Fisher's exact test), Q value = 0.48

Table S16364.  Gene #1551: 'ZSCAN20 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ZSCAN20 MUTATED 1 0 3 3
ZSCAN20 WILD-TYPE 45 58 61 40
'ZSCAN20 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.795 (Fisher's exact test), Q value = 1

Table S16365.  Gene #1551: 'ZSCAN20 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ZSCAN20 MUTATED 2 2 3
ZSCAN20 WILD-TYPE 49 81 74
'ZSCAN20 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.483 (Fisher's exact test), Q value = 0.81

Table S16366.  Gene #1551: 'ZSCAN20 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ZSCAN20 MUTATED 8 4 5 0
ZSCAN20 WILD-TYPE 170 179 96 20
'ZSCAN20 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0178 (Fisher's exact test), Q value = 0.13

Table S16367.  Gene #1551: 'ZSCAN20 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ZSCAN20 MUTATED 7 0 3
ZSCAN20 WILD-TYPE 80 80 97

Figure S4167.  Get High-res Image Gene #1551: 'ZSCAN20 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'ZSCAN20 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.349 (Fisher's exact test), Q value = 0.68

Table S16368.  Gene #1551: 'ZSCAN20 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ZSCAN20 MUTATED 4 4 8
ZSCAN20 WILD-TYPE 85 156 130
'ZSCAN20 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.667 (Fisher's exact test), Q value = 0.95

Table S16369.  Gene #1551: 'ZSCAN20 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ZSCAN20 MUTATED 6 7 3
ZSCAN20 WILD-TYPE 176 126 69
'ZSCAN20 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0183 (Fisher's exact test), Q value = 0.13

Table S16370.  Gene #1551: 'ZSCAN20 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ZSCAN20 MUTATED 0 7 4 6
ZSCAN20 WILD-TYPE 112 89 88 180

Figure S4168.  Get High-res Image Gene #1551: 'ZSCAN20 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'ZSCAN20 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.181 (Fisher's exact test), Q value = 0.48

Table S16371.  Gene #1551: 'ZSCAN20 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ZSCAN20 MUTATED 1 4 4 2 1 3 2
ZSCAN20 WILD-TYPE 59 46 45 38 62 122 97
'ZSCAN20 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.952 (Fisher's exact test), Q value = 1

Table S16372.  Gene #1551: 'ZSCAN20 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ZSCAN20 MUTATED 4 3 3 7
ZSCAN20 WILD-TYPE 126 75 65 189
'ZSCAN20 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.401 (Fisher's exact test), Q value = 0.73

Table S16373.  Gene #1551: 'ZSCAN20 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ZSCAN20 MUTATED 0 2 0 4 5 0 2 0 4
ZSCAN20 WILD-TYPE 40 60 28 76 64 48 41 28 70
'ZSCAN20 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.207 (Fisher's exact test), Q value = 0.51

Table S16374.  Gene #1551: 'ZSCAN20 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
ZSCAN20 MUTATED 0 2 0 1
ZSCAN20 WILD-TYPE 33 29 27 18
'ZSCAN20 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.838 (Fisher's exact test), Q value = 1

Table S16375.  Gene #1551: 'ZSCAN20 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
ZSCAN20 MUTATED 2 0 0 1
ZSCAN20 WILD-TYPE 52 10 24 21
'ERCC3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0432 (Fisher's exact test), Q value = 0.22

Table S16376.  Gene #1552: 'ERCC3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ERCC3 MUTATED 4 1 0 2
ERCC3 WILD-TYPE 42 57 64 41

Figure S4169.  Get High-res Image Gene #1552: 'ERCC3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'ERCC3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.432 (Fisher's exact test), Q value = 0.76

Table S16377.  Gene #1552: 'ERCC3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ERCC3 MUTATED 3 3 1
ERCC3 WILD-TYPE 48 80 76
'ERCC3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0479 (Fisher's exact test), Q value = 0.23

Table S16378.  Gene #1552: 'ERCC3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ERCC3 MUTATED 13 3 3 0
ERCC3 WILD-TYPE 165 180 98 20

Figure S4170.  Get High-res Image Gene #1552: 'ERCC3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ERCC3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.178 (Fisher's exact test), Q value = 0.48

Table S16379.  Gene #1552: 'ERCC3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ERCC3 MUTATED 6 1 6
ERCC3 WILD-TYPE 81 79 94
'ERCC3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.661 (Fisher's exact test), Q value = 0.95

Table S16380.  Gene #1552: 'ERCC3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ERCC3 MUTATED 3 6 8
ERCC3 WILD-TYPE 86 154 130
'ERCC3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.723 (Fisher's exact test), Q value = 0.99

Table S16381.  Gene #1552: 'ERCC3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ERCC3 MUTATED 8 7 2
ERCC3 WILD-TYPE 174 126 70
'ERCC3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.227 (Fisher's exact test), Q value = 0.55

Table S16382.  Gene #1552: 'ERCC3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ERCC3 MUTATED 2 4 7 7
ERCC3 WILD-TYPE 110 92 85 179
'ERCC3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0686 (Fisher's exact test), Q value = 0.28

Table S16383.  Gene #1552: 'ERCC3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ERCC3 MUTATED 2 1 5 3 3 1 5
ERCC3 WILD-TYPE 58 49 44 37 60 124 94
'ERCC3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.848 (Fisher's exact test), Q value = 1

Table S16384.  Gene #1552: 'ERCC3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ERCC3 MUTATED 4 4 2 9
ERCC3 WILD-TYPE 126 74 66 187
'ERCC3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.028 (Fisher's exact test), Q value = 0.17

Table S16385.  Gene #1552: 'ERCC3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ERCC3 MUTATED 3 4 1 2 7 0 2 0 0
ERCC3 WILD-TYPE 37 58 27 78 62 48 41 28 74

Figure S4171.  Get High-res Image Gene #1552: 'ERCC3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'ERCC3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S16386.  Gene #1552: 'ERCC3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
ERCC3 MUTATED 1 1 1 1
ERCC3 WILD-TYPE 32 30 26 18
'ERCC3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.766 (Fisher's exact test), Q value = 1

Table S16387.  Gene #1552: 'ERCC3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
ERCC3 MUTATED 3 0 0 1
ERCC3 WILD-TYPE 51 10 24 21
'XKR3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0739 (Fisher's exact test), Q value = 0.29

Table S16388.  Gene #1553: 'XKR3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
XKR3 MUTATED 2 0 0 2
XKR3 WILD-TYPE 44 58 64 41
'XKR3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.556 (Fisher's exact test), Q value = 0.87

Table S16389.  Gene #1553: 'XKR3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
XKR3 MUTATED 2 1 1
XKR3 WILD-TYPE 49 82 76
'XKR3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0203 (Fisher's exact test), Q value = 0.14

Table S16390.  Gene #1553: 'XKR3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
XKR3 MUTATED 10 1 3 1
XKR3 WILD-TYPE 168 182 98 19

Figure S4172.  Get High-res Image Gene #1553: 'XKR3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'XKR3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S16391.  Gene #1553: 'XKR3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
XKR3 MUTATED 4 3 4
XKR3 WILD-TYPE 83 77 96
'XKR3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0246 (Fisher's exact test), Q value = 0.16

Table S16392.  Gene #1553: 'XKR3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
XKR3 MUTATED 0 3 8
XKR3 WILD-TYPE 89 157 130

Figure S4173.  Get High-res Image Gene #1553: 'XKR3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'XKR3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.782 (Fisher's exact test), Q value = 1

Table S16393.  Gene #1553: 'XKR3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
XKR3 MUTATED 5 5 1
XKR3 WILD-TYPE 177 128 71
'XKR3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.865 (Fisher's exact test), Q value = 1

Table S16394.  Gene #1553: 'XKR3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
XKR3 MUTATED 3 3 4 5
XKR3 WILD-TYPE 109 93 88 181
'XKR3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.349 (Fisher's exact test), Q value = 0.68

Table S16395.  Gene #1553: 'XKR3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
XKR3 MUTATED 2 3 3 0 3 2 2
XKR3 WILD-TYPE 58 47 46 40 60 123 97
'XKR3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.436 (Fisher's exact test), Q value = 0.76

Table S16396.  Gene #1553: 'XKR3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
XKR3 MUTATED 5 3 0 7
XKR3 WILD-TYPE 125 75 68 189
'XKR3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.596 (Fisher's exact test), Q value = 0.9

Table S16397.  Gene #1553: 'XKR3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
XKR3 MUTATED 0 3 1 5 3 0 1 0 2
XKR3 WILD-TYPE 40 59 27 75 66 48 42 28 72
'XKR3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0849 (Fisher's exact test), Q value = 0.32

Table S16398.  Gene #1553: 'XKR3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
XKR3 MUTATED 0 1 0 2
XKR3 WILD-TYPE 33 30 27 17
'XKR3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.841 (Fisher's exact test), Q value = 1

Table S16399.  Gene #1553: 'XKR3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
XKR3 MUTATED 2 0 0 1
XKR3 WILD-TYPE 52 10 24 21
'PIGS MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0671 (Fisher's exact test), Q value = 0.28

Table S16400.  Gene #1554: 'PIGS MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
PIGS MUTATED 6 0 2 0
PIGS WILD-TYPE 172 183 99 20
'PIGS MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.385 (Fisher's exact test), Q value = 0.71

Table S16401.  Gene #1554: 'PIGS MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
PIGS MUTATED 1 1 4
PIGS WILD-TYPE 86 79 96
'PIGS MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.702 (Fisher's exact test), Q value = 0.97

Table S16402.  Gene #1554: 'PIGS MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
PIGS MUTATED 2 2 3
PIGS WILD-TYPE 87 158 135
'PIGS MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S16403.  Gene #1554: 'PIGS MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
PIGS MUTATED 4 2 1
PIGS WILD-TYPE 178 131 71
'PIGS MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.275 (Fisher's exact test), Q value = 0.6

Table S16404.  Gene #1554: 'PIGS MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
PIGS MUTATED 2 1 3 1
PIGS WILD-TYPE 110 95 89 185
'PIGS MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0814 (Fisher's exact test), Q value = 0.31

Table S16405.  Gene #1554: 'PIGS MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
PIGS MUTATED 1 2 2 1 0 0 1
PIGS WILD-TYPE 59 48 47 39 63 125 98
'PIGS MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.569 (Fisher's exact test), Q value = 0.88

Table S16406.  Gene #1554: 'PIGS MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
PIGS MUTATED 4 1 1 2
PIGS WILD-TYPE 126 77 67 194
'PIGS MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.911 (Fisher's exact test), Q value = 1

Table S16407.  Gene #1554: 'PIGS MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
PIGS MUTATED 1 1 1 2 2 0 0 0 1
PIGS WILD-TYPE 39 61 27 78 67 48 43 28 73
'PIGS MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0617 (Fisher's exact test), Q value = 0.27

Table S16408.  Gene #1554: 'PIGS MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
PIGS MUTATED 0 0 1 2
PIGS WILD-TYPE 33 31 26 17
'PIGS MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.45 (Fisher's exact test), Q value = 0.78

Table S16409.  Gene #1554: 'PIGS MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
PIGS MUTATED 1 0 2 0
PIGS WILD-TYPE 53 10 22 22
'AAMP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.278 (Fisher's exact test), Q value = 0.6

Table S16410.  Gene #1555: 'AAMP MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
AAMP MUTATED 3 0 0 0
AAMP WILD-TYPE 175 183 101 20
'AAMP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.519 (Fisher's exact test), Q value = 0.84

Table S16411.  Gene #1555: 'AAMP MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
AAMP MUTATED 2 0 1
AAMP WILD-TYPE 85 80 99
'AAMP MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.609 (Fisher's exact test), Q value = 0.91

Table S16412.  Gene #1555: 'AAMP MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
AAMP MUTATED 0 1 2
AAMP WILD-TYPE 89 159 136
'AAMP MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.423 (Fisher's exact test), Q value = 0.75

Table S16413.  Gene #1555: 'AAMP MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
AAMP MUTATED 2 0 1
AAMP WILD-TYPE 180 133 71
'AAMP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0477 (Fisher's exact test), Q value = 0.23

Table S16414.  Gene #1555: 'AAMP MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
AAMP MUTATED 0 1 2 0
AAMP WILD-TYPE 112 95 90 186

Figure S4174.  Get High-res Image Gene #1555: 'AAMP MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'AAMP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00171 (Fisher's exact test), Q value = 0.034

Table S16415.  Gene #1555: 'AAMP MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
AAMP MUTATED 0 0 3 0 0 0 0
AAMP WILD-TYPE 60 50 46 40 63 125 99

Figure S4175.  Get High-res Image Gene #1555: 'AAMP MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'AAMP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.216 (Fisher's exact test), Q value = 0.53

Table S16416.  Gene #1555: 'AAMP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
AAMP MUTATED 2 1 0 0
AAMP WILD-TYPE 128 77 68 196
'AAMP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.649 (Fisher's exact test), Q value = 0.94

Table S16417.  Gene #1555: 'AAMP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
AAMP MUTATED 0 1 0 0 1 0 1 0 0
AAMP WILD-TYPE 40 61 28 80 68 48 42 28 74
'AAMP MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.136 (Fisher's exact test), Q value = 0.41

Table S16418.  Gene #1555: 'AAMP MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
AAMP MUTATED 1 0 0 2
AAMP WILD-TYPE 32 31 27 17
'AAMP MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S16419.  Gene #1555: 'AAMP MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
AAMP MUTATED 2 0 1 0
AAMP WILD-TYPE 52 10 23 22
'IL21R MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.31 (Fisher's exact test), Q value = 0.64

Table S16420.  Gene #1556: 'IL21R MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
IL21R MUTATED 1 1 0 2
IL21R WILD-TYPE 45 57 64 41
'IL21R MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.175 (Fisher's exact test), Q value = 0.47

Table S16421.  Gene #1556: 'IL21R MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
IL21R MUTATED 2 0 2
IL21R WILD-TYPE 49 83 75
'IL21R MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0121 (Fisher's exact test), Q value = 0.11

Table S16422.  Gene #1556: 'IL21R MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
IL21R MUTATED 11 1 2 0
IL21R WILD-TYPE 167 182 99 20

Figure S4176.  Get High-res Image Gene #1556: 'IL21R MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'IL21R MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.121 (Fisher's exact test), Q value = 0.39

Table S16423.  Gene #1556: 'IL21R MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
IL21R MUTATED 2 1 7
IL21R WILD-TYPE 85 79 93
'IL21R MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.858 (Fisher's exact test), Q value = 1

Table S16424.  Gene #1556: 'IL21R MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
IL21R MUTATED 3 5 3
IL21R WILD-TYPE 86 155 135
'IL21R MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S16425.  Gene #1556: 'IL21R MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
IL21R MUTATED 5 4 2
IL21R WILD-TYPE 177 129 70
'IL21R MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0687 (Fisher's exact test), Q value = 0.28

Table S16426.  Gene #1556: 'IL21R MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
IL21R MUTATED 2 7 2 3
IL21R WILD-TYPE 110 89 90 183
'IL21R MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00983 (Fisher's exact test), Q value = 0.094

Table S16427.  Gene #1556: 'IL21R MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
IL21R MUTATED 2 1 6 1 0 1 3
IL21R WILD-TYPE 58 49 43 39 63 124 96

Figure S4177.  Get High-res Image Gene #1556: 'IL21R MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'IL21R MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.255 (Fisher's exact test), Q value = 0.58

Table S16428.  Gene #1556: 'IL21R MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
IL21R MUTATED 6 1 0 7
IL21R WILD-TYPE 124 77 68 189
'IL21R MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00098 (Fisher's exact test), Q value = 0.024

Table S16429.  Gene #1556: 'IL21R MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
IL21R MUTATED 1 1 0 3 9 0 0 0 0
IL21R WILD-TYPE 39 61 28 77 60 48 43 28 74

Figure S4178.  Get High-res Image Gene #1556: 'IL21R MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'MBP MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.12 (Fisher's exact test), Q value = 0.39

Table S16430.  Gene #1557: 'MBP MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
MBP MUTATED 2 0 0 1
MBP WILD-TYPE 44 58 64 42
'MBP MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.252 (Fisher's exact test), Q value = 0.58

Table S16431.  Gene #1557: 'MBP MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
MBP MUTATED 2 1 0
MBP WILD-TYPE 49 82 77
'MBP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0228 (Fisher's exact test), Q value = 0.15

Table S16432.  Gene #1557: 'MBP MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
MBP MUTATED 6 0 0 0
MBP WILD-TYPE 172 183 101 20

Figure S4179.  Get High-res Image Gene #1557: 'MBP MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'MBP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.513 (Fisher's exact test), Q value = 0.83

Table S16433.  Gene #1557: 'MBP MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
MBP MUTATED 2 0 1
MBP WILD-TYPE 85 80 99
'MBP MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.507 (Fisher's exact test), Q value = 0.83

Table S16434.  Gene #1557: 'MBP MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
MBP MUTATED 0 3 3
MBP WILD-TYPE 89 157 135
'MBP MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S16435.  Gene #1557: 'MBP MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
MBP MUTATED 3 2 1
MBP WILD-TYPE 179 131 71
'MBP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.507 (Fisher's exact test), Q value = 0.83

Table S16436.  Gene #1557: 'MBP MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
MBP MUTATED 0 2 1 3
MBP WILD-TYPE 112 94 91 183
'MBP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0165 (Fisher's exact test), Q value = 0.13

Table S16437.  Gene #1557: 'MBP MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
MBP MUTATED 0 0 3 0 0 0 3
MBP WILD-TYPE 60 50 46 40 63 125 96

Figure S4180.  Get High-res Image Gene #1557: 'MBP MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'MBP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.886 (Fisher's exact test), Q value = 1

Table S16438.  Gene #1557: 'MBP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
MBP MUTATED 2 1 0 3
MBP WILD-TYPE 128 77 68 193
'MBP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.098 (Fisher's exact test), Q value = 0.34

Table S16439.  Gene #1557: 'MBP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
MBP MUTATED 0 1 1 0 3 0 0 1 0
MBP WILD-TYPE 40 61 27 80 66 48 43 27 74
'DLGAP5 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0637 (Fisher's exact test), Q value = 0.27

Table S16440.  Gene #1558: 'DLGAP5 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
DLGAP5 MUTATED 1 0 0 2
DLGAP5 WILD-TYPE 45 58 64 41
'DLGAP5 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.35 (Fisher's exact test), Q value = 0.68

Table S16441.  Gene #1558: 'DLGAP5 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
DLGAP5 MUTATED 1 0 2
DLGAP5 WILD-TYPE 50 83 75
'DLGAP5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.339 (Fisher's exact test), Q value = 0.67

Table S16442.  Gene #1558: 'DLGAP5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
DLGAP5 MUTATED 5 5 0 0
DLGAP5 WILD-TYPE 173 178 101 20
'DLGAP5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0488 (Fisher's exact test), Q value = 0.24

Table S16443.  Gene #1558: 'DLGAP5 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
DLGAP5 MUTATED 3 4 0
DLGAP5 WILD-TYPE 84 76 100

Figure S4181.  Get High-res Image Gene #1558: 'DLGAP5 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'DLGAP5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.919 (Fisher's exact test), Q value = 1

Table S16444.  Gene #1558: 'DLGAP5 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
DLGAP5 MUTATED 2 5 3
DLGAP5 WILD-TYPE 87 155 135
'DLGAP5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.134 (Fisher's exact test), Q value = 0.41

Table S16445.  Gene #1558: 'DLGAP5 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
DLGAP5 MUTATED 2 6 2
DLGAP5 WILD-TYPE 180 127 70
'DLGAP5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.626 (Fisher's exact test), Q value = 0.92

Table S16446.  Gene #1558: 'DLGAP5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
DLGAP5 MUTATED 4 1 1 4
DLGAP5 WILD-TYPE 108 95 91 182
'DLGAP5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.643 (Fisher's exact test), Q value = 0.93

Table S16447.  Gene #1558: 'DLGAP5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
DLGAP5 MUTATED 2 2 0 1 2 2 1
DLGAP5 WILD-TYPE 58 48 49 39 61 123 98
'DLGAP5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.701 (Fisher's exact test), Q value = 0.97

Table S16448.  Gene #1558: 'DLGAP5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
DLGAP5 MUTATED 3 2 0 5
DLGAP5 WILD-TYPE 127 76 68 191
'DLGAP5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.928 (Fisher's exact test), Q value = 1

Table S16449.  Gene #1558: 'DLGAP5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
DLGAP5 MUTATED 1 2 0 1 2 2 0 0 2
DLGAP5 WILD-TYPE 39 60 28 79 67 46 43 28 72
'MAP7 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00686 (Fisher's exact test), Q value = 0.076

Table S16450.  Gene #1559: 'MAP7 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
MAP7 MUTATED 4 0 1 5
MAP7 WILD-TYPE 42 58 63 38

Figure S4182.  Get High-res Image Gene #1559: 'MAP7 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'MAP7 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.185 (Fisher's exact test), Q value = 0.49

Table S16451.  Gene #1559: 'MAP7 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
MAP7 MUTATED 5 2 3
MAP7 WILD-TYPE 46 81 74
'MAP7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00346 (Fisher's exact test), Q value = 0.053

Table S16452.  Gene #1559: 'MAP7 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
MAP7 MUTATED 12 1 1 0
MAP7 WILD-TYPE 166 182 100 20

Figure S4183.  Get High-res Image Gene #1559: 'MAP7 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'MAP7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.392 (Fisher's exact test), Q value = 0.72

Table S16453.  Gene #1559: 'MAP7 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
MAP7 MUTATED 1 0 3
MAP7 WILD-TYPE 86 80 97
'MAP7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.26 (Fisher's exact test), Q value = 0.58

Table S16454.  Gene #1559: 'MAP7 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
MAP7 MUTATED 0 5 4
MAP7 WILD-TYPE 89 155 134
'MAP7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S16455.  Gene #1559: 'MAP7 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
MAP7 MUTATED 5 3 1
MAP7 WILD-TYPE 177 130 71
'MAP7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0419 (Fisher's exact test), Q value = 0.22

Table S16456.  Gene #1559: 'MAP7 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
MAP7 MUTATED 0 2 2 10
MAP7 WILD-TYPE 112 94 90 176

Figure S4184.  Get High-res Image Gene #1559: 'MAP7 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'MAP7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0163 (Fisher's exact test), Q value = 0.13

Table S16457.  Gene #1559: 'MAP7 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
MAP7 MUTATED 1 0 4 0 0 2 7
MAP7 WILD-TYPE 59 50 45 40 63 123 92

Figure S4185.  Get High-res Image Gene #1559: 'MAP7 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'MAP7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0898 (Fisher's exact test), Q value = 0.33

Table S16458.  Gene #1559: 'MAP7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
MAP7 MUTATED 2 1 0 10
MAP7 WILD-TYPE 128 77 68 186
'MAP7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00697 (Fisher's exact test), Q value = 0.077

Table S16459.  Gene #1559: 'MAP7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
MAP7 MUTATED 0 1 2 1 7 1 0 1 0
MAP7 WILD-TYPE 40 61 26 79 62 47 43 27 74

Figure S4186.  Get High-res Image Gene #1559: 'MAP7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'MAP7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00445 (Fisher's exact test), Q value = 0.061

Table S16460.  Gene #1559: 'MAP7 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
MAP7 MUTATED 0 0 0 3
MAP7 WILD-TYPE 33 31 27 16

Figure S4187.  Get High-res Image Gene #1559: 'MAP7 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'MAP7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.444 (Fisher's exact test), Q value = 0.77

Table S16461.  Gene #1559: 'MAP7 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
MAP7 MUTATED 1 0 2 0
MAP7 WILD-TYPE 53 10 22 22
'OR4A16 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.371 (Fisher's exact test), Q value = 0.7

Table S16462.  Gene #1560: 'OR4A16 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
OR4A16 MUTATED 2 1 0 1
OR4A16 WILD-TYPE 44 57 64 42
'OR4A16 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S16463.  Gene #1560: 'OR4A16 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
OR4A16 MUTATED 1 2 1
OR4A16 WILD-TYPE 50 81 76
'OR4A16 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.403 (Fisher's exact test), Q value = 0.73

Table S16464.  Gene #1560: 'OR4A16 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
OR4A16 MUTATED 9 4 2 0
OR4A16 WILD-TYPE 169 179 99 20
'OR4A16 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.339 (Fisher's exact test), Q value = 0.67

Table S16465.  Gene #1560: 'OR4A16 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
OR4A16 MUTATED 6 2 3
OR4A16 WILD-TYPE 81 78 97
'OR4A16 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.478 (Fisher's exact test), Q value = 0.81

Table S16466.  Gene #1560: 'OR4A16 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
OR4A16 MUTATED 1 6 6
OR4A16 WILD-TYPE 88 154 132
'OR4A16 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.934 (Fisher's exact test), Q value = 1

Table S16467.  Gene #1560: 'OR4A16 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
OR4A16 MUTATED 7 4 2
OR4A16 WILD-TYPE 175 129 70
'OR4A16 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.448 (Fisher's exact test), Q value = 0.77

Table S16468.  Gene #1560: 'OR4A16 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
OR4A16 MUTATED 4 2 5 4
OR4A16 WILD-TYPE 108 94 87 182
'OR4A16 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.633 (Fisher's exact test), Q value = 0.93

Table S16469.  Gene #1560: 'OR4A16 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
OR4A16 MUTATED 3 2 2 0 3 2 3
OR4A16 WILD-TYPE 57 48 47 40 60 123 96
'OR4A16 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.868 (Fisher's exact test), Q value = 1

Table S16470.  Gene #1560: 'OR4A16 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
OR4A16 MUTATED 5 3 2 5
OR4A16 WILD-TYPE 125 75 66 191
'OR4A16 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.601 (Fisher's exact test), Q value = 0.9

Table S16471.  Gene #1560: 'OR4A16 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
OR4A16 MUTATED 2 3 2 1 2 2 2 0 1
OR4A16 WILD-TYPE 38 59 26 79 67 46 41 28 73
'OR4A16 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.705 (Fisher's exact test), Q value = 0.98

Table S16472.  Gene #1560: 'OR4A16 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
OR4A16 MUTATED 2 1 0 0
OR4A16 WILD-TYPE 31 30 27 19
'OR4A16 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.562 (Fisher's exact test), Q value = 0.87

Table S16473.  Gene #1560: 'OR4A16 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
OR4A16 MUTATED 3 0 0 0
OR4A16 WILD-TYPE 51 10 24 22
'IRF6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.44 (Fisher's exact test), Q value = 0.77

Table S16474.  Gene #1561: 'IRF6 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
IRF6 MUTATED 4 2 0 0
IRF6 WILD-TYPE 174 181 101 20
'IRF6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.559 (Fisher's exact test), Q value = 0.87

Table S16475.  Gene #1561: 'IRF6 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
IRF6 MUTATED 2 0 2
IRF6 WILD-TYPE 85 80 98
'IRF6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.767 (Fisher's exact test), Q value = 1

Table S16476.  Gene #1561: 'IRF6 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
IRF6 MUTATED 2 2 2
IRF6 WILD-TYPE 87 158 136
'IRF6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.495 (Fisher's exact test), Q value = 0.82

Table S16477.  Gene #1561: 'IRF6 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
IRF6 MUTATED 2 2 2
IRF6 WILD-TYPE 180 131 70
'IRF6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.509 (Fisher's exact test), Q value = 0.83

Table S16478.  Gene #1561: 'IRF6 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
IRF6 MUTATED 0 2 1 3
IRF6 WILD-TYPE 112 94 91 183
'IRF6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.267 (Fisher's exact test), Q value = 0.59

Table S16479.  Gene #1561: 'IRF6 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
IRF6 MUTATED 1 1 1 0 0 0 3
IRF6 WILD-TYPE 59 49 48 40 63 125 96
'IRF6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.865 (Fisher's exact test), Q value = 1

Table S16480.  Gene #1561: 'IRF6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
IRF6 MUTATED 2 1 0 2
IRF6 WILD-TYPE 128 77 68 194
'IRF6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.859 (Fisher's exact test), Q value = 1

Table S16481.  Gene #1561: 'IRF6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
IRF6 MUTATED 1 0 0 1 2 0 0 0 1
IRF6 WILD-TYPE 39 62 28 79 67 48 43 28 73
'LGALS9C MUTATION STATUS' versus 'CN_CNMF'

P value = 0.44 (Fisher's exact test), Q value = 0.77

Table S16482.  Gene #1562: 'LGALS9C MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
LGALS9C MUTATED 4 2 0 0
LGALS9C WILD-TYPE 174 181 101 20
'LGALS9C MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S16483.  Gene #1562: 'LGALS9C MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
LGALS9C MUTATED 2 1 2
LGALS9C WILD-TYPE 85 79 98
'LGALS9C MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.509 (Fisher's exact test), Q value = 0.83

Table S16484.  Gene #1562: 'LGALS9C MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
LGALS9C MUTATED 0 3 3
LGALS9C WILD-TYPE 89 157 135
'LGALS9C MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S16485.  Gene #1562: 'LGALS9C MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
LGALS9C MUTATED 3 2 1
LGALS9C WILD-TYPE 179 131 71
'LGALS9C MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.586 (Fisher's exact test), Q value = 0.89

Table S16486.  Gene #1562: 'LGALS9C MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
LGALS9C MUTATED 2 2 1 1
LGALS9C WILD-TYPE 110 94 91 185
'LGALS9C MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0822 (Fisher's exact test), Q value = 0.31

Table S16487.  Gene #1562: 'LGALS9C MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
LGALS9C MUTATED 1 1 2 1 1 0 0
LGALS9C WILD-TYPE 59 49 47 39 62 125 99
'LGALS9C MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.447 (Fisher's exact test), Q value = 0.77

Table S16488.  Gene #1562: 'LGALS9C MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
LGALS9C MUTATED 3 1 1 1
LGALS9C WILD-TYPE 127 77 67 195
'LGALS9C MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.585 (Fisher's exact test), Q value = 0.89

Table S16489.  Gene #1562: 'LGALS9C MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
LGALS9C MUTATED 0 1 0 2 1 0 2 0 0
LGALS9C WILD-TYPE 40 61 28 78 68 48 41 28 74
'ZNF512 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0532 (Fisher's exact test), Q value = 0.25

Table S16490.  Gene #1563: 'ZNF512 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ZNF512 MUTATED 0 2 0 1
ZNF512 WILD-TYPE 178 181 101 19
'ZNF512 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.295 (Fisher's exact test), Q value = 0.62

Table S16491.  Gene #1563: 'ZNF512 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ZNF512 MUTATED 2 1 0
ZNF512 WILD-TYPE 85 79 100
'ZNF512 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.184 (Fisher's exact test), Q value = 0.48

Table S16492.  Gene #1563: 'ZNF512 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ZNF512 MUTATED 2 1 0 0
ZNF512 WILD-TYPE 110 95 92 186
'ZNF512 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00825 (Fisher's exact test), Q value = 0.085

Table S16493.  Gene #1563: 'ZNF512 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ZNF512 MUTATED 0 1 0 2 0 0 0
ZNF512 WILD-TYPE 60 49 49 38 63 125 99

Figure S4188.  Get High-res Image Gene #1563: 'ZNF512 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ZNF512 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0653 (Fisher's exact test), Q value = 0.28

Table S16494.  Gene #1563: 'ZNF512 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ZNF512 MUTATED 3 0 0 0
ZNF512 WILD-TYPE 127 78 68 196
'ZNF512 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0485 (Fisher's exact test), Q value = 0.24

Table S16495.  Gene #1563: 'ZNF512 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ZNF512 MUTATED 0 0 0 0 0 1 2 0 0
ZNF512 WILD-TYPE 40 62 28 80 69 47 41 28 74

Figure S4189.  Get High-res Image Gene #1563: 'ZNF512 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'HIF1A MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0326 (Fisher's exact test), Q value = 0.18

Table S16496.  Gene #1564: 'HIF1A MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
HIF1A MUTATED 3 0 0 1
HIF1A WILD-TYPE 43 58 64 42

Figure S4190.  Get High-res Image Gene #1564: 'HIF1A MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'HIF1A MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0401 (Fisher's exact test), Q value = 0.21

Table S16497.  Gene #1564: 'HIF1A MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
HIF1A MUTATED 3 0 1
HIF1A WILD-TYPE 48 83 76

Figure S4191.  Get High-res Image Gene #1564: 'HIF1A MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'HIF1A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00025 (Fisher's exact test), Q value = 0.0096

Table S16498.  Gene #1564: 'HIF1A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
HIF1A MUTATED 11 0 0 0
HIF1A WILD-TYPE 167 183 101 20

Figure S4192.  Get High-res Image Gene #1564: 'HIF1A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'HIF1A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0792 (Fisher's exact test), Q value = 0.3

Table S16499.  Gene #1564: 'HIF1A MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
HIF1A MUTATED 5 0 3
HIF1A WILD-TYPE 82 80 97
'HIF1A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.247 (Fisher's exact test), Q value = 0.57

Table S16500.  Gene #1564: 'HIF1A MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
HIF1A MUTATED 1 4 7
HIF1A WILD-TYPE 88 156 131
'HIF1A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.638 (Fisher's exact test), Q value = 0.93

Table S16501.  Gene #1564: 'HIF1A MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
HIF1A MUTATED 7 4 1
HIF1A WILD-TYPE 175 129 71
'HIF1A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.248 (Fisher's exact test), Q value = 0.57

Table S16502.  Gene #1564: 'HIF1A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
HIF1A MUTATED 1 2 5 4
HIF1A WILD-TYPE 111 94 87 182
'HIF1A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0106 (Fisher's exact test), Q value = 0.099

Table S16503.  Gene #1564: 'HIF1A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
HIF1A MUTATED 2 1 5 0 1 0 3
HIF1A WILD-TYPE 58 49 44 40 62 125 96

Figure S4193.  Get High-res Image Gene #1564: 'HIF1A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'HIF1A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.216 (Fisher's exact test), Q value = 0.53

Table S16504.  Gene #1564: 'HIF1A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
HIF1A MUTATED 2 4 0 5
HIF1A WILD-TYPE 128 74 68 191
'HIF1A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.479 (Fisher's exact test), Q value = 0.81

Table S16505.  Gene #1564: 'HIF1A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
HIF1A MUTATED 0 4 0 2 3 0 1 0 1
HIF1A WILD-TYPE 40 58 28 78 66 48 42 28 73
'HIF1A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0242 (Fisher's exact test), Q value = 0.16

Table S16506.  Gene #1564: 'HIF1A MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
HIF1A MUTATED 1 0 0 3
HIF1A WILD-TYPE 32 31 27 16

Figure S4194.  Get High-res Image Gene #1564: 'HIF1A MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'HIF1A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.871 (Fisher's exact test), Q value = 1

Table S16507.  Gene #1564: 'HIF1A MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
HIF1A MUTATED 3 0 1 0
HIF1A WILD-TYPE 51 10 23 22
'CD79A MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.12 (Fisher's exact test), Q value = 0.39

Table S16508.  Gene #1565: 'CD79A MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
CD79A MUTATED 2 0 0 1
CD79A WILD-TYPE 44 58 64 42
'CD79A MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0138 (Fisher's exact test), Q value = 0.12

Table S16509.  Gene #1565: 'CD79A MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
CD79A MUTATED 3 0 0
CD79A WILD-TYPE 48 83 77

Figure S4195.  Get High-res Image Gene #1565: 'CD79A MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'CD79A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0925 (Fisher's exact test), Q value = 0.33

Table S16510.  Gene #1565: 'CD79A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
CD79A MUTATED 5 0 1 0
CD79A WILD-TYPE 173 183 100 20
'CD79A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.778 (Fisher's exact test), Q value = 1

Table S16511.  Gene #1565: 'CD79A MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
CD79A MUTATED 1 0 2
CD79A WILD-TYPE 86 80 98
'CD79A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.875 (Fisher's exact test), Q value = 1

Table S16512.  Gene #1565: 'CD79A MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
CD79A MUTATED 1 2 3
CD79A WILD-TYPE 88 158 135
'CD79A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.493 (Fisher's exact test), Q value = 0.82

Table S16513.  Gene #1565: 'CD79A MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
CD79A MUTATED 2 2 2
CD79A WILD-TYPE 180 131 70
'CD79A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.509 (Fisher's exact test), Q value = 0.83

Table S16514.  Gene #1565: 'CD79A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
CD79A MUTATED 0 2 1 3
CD79A WILD-TYPE 112 94 91 183
'CD79A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.294 (Fisher's exact test), Q value = 0.62

Table S16515.  Gene #1565: 'CD79A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
CD79A MUTATED 0 1 1 0 1 0 3
CD79A WILD-TYPE 60 49 48 40 62 125 96
'CD79A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.509 (Fisher's exact test), Q value = 0.83

Table S16516.  Gene #1565: 'CD79A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
CD79A MUTATED 3 0 0 3
CD79A WILD-TYPE 127 78 68 193
'CD79A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0247 (Fisher's exact test), Q value = 0.16

Table S16517.  Gene #1565: 'CD79A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
CD79A MUTATED 0 0 1 0 4 0 1 0 0
CD79A WILD-TYPE 40 62 27 80 65 48 42 28 74

Figure S4196.  Get High-res Image Gene #1565: 'CD79A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'HIVEP1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0057 (Fisher's exact test), Q value = 0.068

Table S16518.  Gene #1566: 'HIVEP1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
HIVEP1 MUTATED 2 0 0 4
HIVEP1 WILD-TYPE 44 58 64 39

Figure S4197.  Get High-res Image Gene #1566: 'HIVEP1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'HIVEP1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.881 (Fisher's exact test), Q value = 1

Table S16519.  Gene #1566: 'HIVEP1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
HIVEP1 MUTATED 2 2 2
HIVEP1 WILD-TYPE 49 81 75
'HIVEP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0522 (Fisher's exact test), Q value = 0.25

Table S16520.  Gene #1566: 'HIVEP1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
HIVEP1 MUTATED 13 3 4 0
HIVEP1 WILD-TYPE 165 180 97 20
'HIVEP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.239 (Fisher's exact test), Q value = 0.56

Table S16521.  Gene #1566: 'HIVEP1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
HIVEP1 MUTATED 4 2 8
HIVEP1 WILD-TYPE 83 78 92
'HIVEP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.316 (Fisher's exact test), Q value = 0.64

Table S16522.  Gene #1566: 'HIVEP1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
HIVEP1 MUTATED 2 7 9
HIVEP1 WILD-TYPE 87 153 129
'HIVEP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.192 (Fisher's exact test), Q value = 0.49

Table S16523.  Gene #1566: 'HIVEP1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
HIVEP1 MUTATED 12 5 1
HIVEP1 WILD-TYPE 170 128 71
'HIVEP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.218 (Fisher's exact test), Q value = 0.53

Table S16524.  Gene #1566: 'HIVEP1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
HIVEP1 MUTATED 2 6 6 6
HIVEP1 WILD-TYPE 110 90 86 180
'HIVEP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.175 (Fisher's exact test), Q value = 0.47

Table S16525.  Gene #1566: 'HIVEP1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
HIVEP1 MUTATED 2 3 3 3 4 1 4
HIVEP1 WILD-TYPE 58 47 46 37 59 124 95
'HIVEP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.359 (Fisher's exact test), Q value = 0.69

Table S16526.  Gene #1566: 'HIVEP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
HIVEP1 MUTATED 8 4 1 6
HIVEP1 WILD-TYPE 122 74 67 190
'HIVEP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.321 (Fisher's exact test), Q value = 0.65

Table S16527.  Gene #1566: 'HIVEP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
HIVEP1 MUTATED 4 4 1 3 4 0 1 1 1
HIVEP1 WILD-TYPE 36 58 27 77 65 48 42 27 73
'HIVEP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.191 (Fisher's exact test), Q value = 0.49

Table S16528.  Gene #1566: 'HIVEP1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
HIVEP1 MUTATED 0 1 1 2
HIVEP1 WILD-TYPE 33 30 26 17
'HIVEP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.604 (Fisher's exact test), Q value = 0.91

Table S16529.  Gene #1566: 'HIVEP1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
HIVEP1 MUTATED 2 1 1 0
HIVEP1 WILD-TYPE 52 9 23 22
'C1S MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00382 (Fisher's exact test), Q value = 0.056

Table S16530.  Gene #1567: 'C1S MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
C1S MUTATED 1 0 0 4
C1S WILD-TYPE 45 58 64 39

Figure S4198.  Get High-res Image Gene #1567: 'C1S MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'C1S MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0449 (Fisher's exact test), Q value = 0.23

Table S16531.  Gene #1567: 'C1S MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
C1S MUTATED 3 0 2
C1S WILD-TYPE 48 83 75

Figure S4199.  Get High-res Image Gene #1567: 'C1S MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'C1S MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00882 (Fisher's exact test), Q value = 0.088

Table S16532.  Gene #1567: 'C1S MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
C1S MUTATED 11 1 1 0
C1S WILD-TYPE 167 182 100 20

Figure S4200.  Get High-res Image Gene #1567: 'C1S MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'C1S MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.603 (Fisher's exact test), Q value = 0.91

Table S16533.  Gene #1567: 'C1S MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
C1S MUTATED 3 1 4
C1S WILD-TYPE 84 79 96
'C1S MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.419 (Fisher's exact test), Q value = 0.75

Table S16534.  Gene #1567: 'C1S MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
C1S MUTATED 1 5 6
C1S WILD-TYPE 88 155 132
'C1S MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.743 (Fisher's exact test), Q value = 1

Table S16535.  Gene #1567: 'C1S MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
C1S MUTATED 6 5 1
C1S WILD-TYPE 176 128 71
'C1S MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.336 (Fisher's exact test), Q value = 0.66

Table S16536.  Gene #1567: 'C1S MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
C1S MUTATED 1 5 2 5
C1S WILD-TYPE 111 91 90 181
'C1S MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0141 (Fisher's exact test), Q value = 0.12

Table S16537.  Gene #1567: 'C1S MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
C1S MUTATED 2 1 4 1 0 0 5
C1S WILD-TYPE 58 49 45 39 63 125 94

Figure S4201.  Get High-res Image Gene #1567: 'C1S MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'C1S MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.974 (Fisher's exact test), Q value = 1

Table S16538.  Gene #1567: 'C1S MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
C1S MUTATED 3 2 1 6
C1S WILD-TYPE 127 76 67 190
'C1S MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.124 (Fisher's exact test), Q value = 0.39

Table S16539.  Gene #1567: 'C1S MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
C1S MUTATED 1 3 1 2 5 0 0 0 0
C1S WILD-TYPE 39 59 27 78 64 48 43 28 74
'C1S MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00858 (Fisher's exact test), Q value = 0.086

Table S16540.  Gene #1567: 'C1S MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
C1S MUTATED 0 0 1 3
C1S WILD-TYPE 33 31 26 16

Figure S4202.  Get High-res Image Gene #1567: 'C1S MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'C1S MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.67 (Fisher's exact test), Q value = 0.95

Table S16541.  Gene #1567: 'C1S MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
C1S MUTATED 2 0 2 0
C1S WILD-TYPE 52 10 22 22
'OR8K3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00173 (Fisher's exact test), Q value = 0.034

Table S16542.  Gene #1568: 'OR8K3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
OR8K3 MUTATED 0 0 0 4
OR8K3 WILD-TYPE 46 58 64 39

Figure S4203.  Get High-res Image Gene #1568: 'OR8K3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'OR8K3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.555 (Fisher's exact test), Q value = 0.87

Table S16543.  Gene #1568: 'OR8K3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
OR8K3 MUTATED 2 1 1
OR8K3 WILD-TYPE 49 82 76
'OR8K3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.224 (Fisher's exact test), Q value = 0.54

Table S16544.  Gene #1568: 'OR8K3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
OR8K3 MUTATED 8 2 2 0
OR8K3 WILD-TYPE 170 181 99 20
'OR8K3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0198 (Fisher's exact test), Q value = 0.14

Table S16545.  Gene #1568: 'OR8K3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
OR8K3 MUTATED 6 0 2
OR8K3 WILD-TYPE 81 80 98

Figure S4204.  Get High-res Image Gene #1568: 'OR8K3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'OR8K3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.153 (Fisher's exact test), Q value = 0.44

Table S16546.  Gene #1568: 'OR8K3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
OR8K3 MUTATED 2 1 5
OR8K3 WILD-TYPE 87 159 133
'OR8K3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.896 (Fisher's exact test), Q value = 1

Table S16547.  Gene #1568: 'OR8K3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
OR8K3 MUTATED 5 2 1
OR8K3 WILD-TYPE 177 131 71
'OR8K3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.427 (Fisher's exact test), Q value = 0.75

Table S16548.  Gene #1568: 'OR8K3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
OR8K3 MUTATED 1 3 4 4
OR8K3 WILD-TYPE 111 93 88 182
'OR8K3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.178 (Fisher's exact test), Q value = 0.48

Table S16549.  Gene #1568: 'OR8K3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
OR8K3 MUTATED 2 2 2 1 1 0 4
OR8K3 WILD-TYPE 58 48 47 39 62 125 95
'OR8K3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.771 (Fisher's exact test), Q value = 1

Table S16550.  Gene #1568: 'OR8K3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
OR8K3 MUTATED 4 3 1 4
OR8K3 WILD-TYPE 126 75 67 192
'OR8K3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.655 (Fisher's exact test), Q value = 0.94

Table S16551.  Gene #1568: 'OR8K3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
OR8K3 MUTATED 2 2 2 2 2 0 1 0 1
OR8K3 WILD-TYPE 38 60 26 78 67 48 42 28 73
'OR8K3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.252 (Fisher's exact test), Q value = 0.58

Table S16552.  Gene #1568: 'OR8K3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
OR8K3 MUTATED 2 0 0 1
OR8K3 WILD-TYPE 31 31 27 18
'OR8K3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.563 (Fisher's exact test), Q value = 0.87

Table S16553.  Gene #1568: 'OR8K3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
OR8K3 MUTATED 3 0 0 0
OR8K3 WILD-TYPE 51 10 24 22
'NUP210L MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0608 (Fisher's exact test), Q value = 0.27

Table S16554.  Gene #1569: 'NUP210L MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
NUP210L MUTATED 3 1 0 3
NUP210L WILD-TYPE 43 57 64 40
'NUP210L MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.123 (Fisher's exact test), Q value = 0.39

Table S16555.  Gene #1569: 'NUP210L MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
NUP210L MUTATED 4 2 1
NUP210L WILD-TYPE 47 81 76
'NUP210L MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00074 (Fisher's exact test), Q value = 0.02

Table S16556.  Gene #1569: 'NUP210L MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
NUP210L MUTATED 16 4 1 3
NUP210L WILD-TYPE 162 179 100 17

Figure S4205.  Get High-res Image Gene #1569: 'NUP210L MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'NUP210L MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.241 (Fisher's exact test), Q value = 0.56

Table S16557.  Gene #1569: 'NUP210L MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
NUP210L MUTATED 7 2 8
NUP210L WILD-TYPE 80 78 92
'NUP210L MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.159 (Fisher's exact test), Q value = 0.45

Table S16558.  Gene #1569: 'NUP210L MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
NUP210L MUTATED 2 7 11
NUP210L WILD-TYPE 87 153 127
'NUP210L MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.867 (Fisher's exact test), Q value = 1

Table S16559.  Gene #1569: 'NUP210L MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
NUP210L MUTATED 9 8 3
NUP210L WILD-TYPE 173 125 69
'NUP210L MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.688 (Fisher's exact test), Q value = 0.97

Table S16560.  Gene #1569: 'NUP210L MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
NUP210L MUTATED 4 6 6 8
NUP210L WILD-TYPE 108 90 86 178
'NUP210L MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00209 (Fisher's exact test), Q value = 0.038

Table S16561.  Gene #1569: 'NUP210L MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
NUP210L MUTATED 6 3 6 2 0 1 6
NUP210L WILD-TYPE 54 47 43 38 63 124 93

Figure S4206.  Get High-res Image Gene #1569: 'NUP210L MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'NUP210L MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0538 (Fisher's exact test), Q value = 0.25

Table S16562.  Gene #1569: 'NUP210L MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
NUP210L MUTATED 11 3 0 9
NUP210L WILD-TYPE 119 75 68 187
'NUP210L MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.42 (Fisher's exact test), Q value = 0.75

Table S16563.  Gene #1569: 'NUP210L MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
NUP210L MUTATED 2 5 2 1 6 2 2 0 3
NUP210L WILD-TYPE 38 57 26 79 63 46 41 28 71
'NUP210L MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.032 (Fisher's exact test), Q value = 0.18

Table S16564.  Gene #1569: 'NUP210L MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
NUP210L MUTATED 2 1 0 4
NUP210L WILD-TYPE 31 30 27 15

Figure S4207.  Get High-res Image Gene #1569: 'NUP210L MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'NUP210L MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.886 (Fisher's exact test), Q value = 1

Table S16565.  Gene #1569: 'NUP210L MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
NUP210L MUTATED 5 0 1 1
NUP210L WILD-TYPE 49 10 23 21
'RRAGD MUTATION STATUS' versus 'CN_CNMF'

P value = 0.779 (Fisher's exact test), Q value = 1

Table S16566.  Gene #1570: 'RRAGD MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
RRAGD MUTATED 2 4 1 0
RRAGD WILD-TYPE 176 179 100 20
'RRAGD MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.878 (Fisher's exact test), Q value = 1

Table S16567.  Gene #1570: 'RRAGD MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
RRAGD MUTATED 2 1 3
RRAGD WILD-TYPE 85 79 97
'RRAGD MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.579 (Fisher's exact test), Q value = 0.88

Table S16568.  Gene #1570: 'RRAGD MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
RRAGD MUTATED 1 4 1
RRAGD WILD-TYPE 88 156 137
'RRAGD MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.031 (Fisher's exact test), Q value = 0.18

Table S16569.  Gene #1570: 'RRAGD MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
RRAGD MUTATED 0 4 2
RRAGD WILD-TYPE 182 129 70

Figure S4208.  Get High-res Image Gene #1570: 'RRAGD MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'RRAGD MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0181 (Fisher's exact test), Q value = 0.13

Table S16570.  Gene #1570: 'RRAGD MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
RRAGD MUTATED 3 3 0 0
RRAGD WILD-TYPE 109 93 92 186

Figure S4209.  Get High-res Image Gene #1570: 'RRAGD MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'RRAGD MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0102 (Fisher's exact test), Q value = 0.097

Table S16571.  Gene #1570: 'RRAGD MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
RRAGD MUTATED 2 3 0 0 1 0 0
RRAGD WILD-TYPE 58 47 49 40 62 125 99

Figure S4210.  Get High-res Image Gene #1570: 'RRAGD MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'RRAGD MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.384 (Fisher's exact test), Q value = 0.71

Table S16572.  Gene #1570: 'RRAGD MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
RRAGD MUTATED 4 1 0 2
RRAGD WILD-TYPE 126 77 68 194
'RRAGD MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.253 (Fisher's exact test), Q value = 0.58

Table S16573.  Gene #1570: 'RRAGD MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
RRAGD MUTATED 2 1 1 0 0 1 0 0 2
RRAGD WILD-TYPE 38 61 27 80 69 47 43 28 72
'BLM MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00222 (Fisher's exact test), Q value = 0.04

Table S16574.  Gene #1571: 'BLM MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
BLM MUTATED 2 1 0 6
BLM WILD-TYPE 44 57 64 37

Figure S4211.  Get High-res Image Gene #1571: 'BLM MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'BLM MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0953 (Fisher's exact test), Q value = 0.34

Table S16575.  Gene #1571: 'BLM MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
BLM MUTATED 5 2 2
BLM WILD-TYPE 46 81 75
'BLM MUTATION STATUS' versus 'CN_CNMF'

P value = 2e-05 (Fisher's exact test), Q value = 0.0017

Table S16576.  Gene #1571: 'BLM MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
BLM MUTATED 17 1 0 1
BLM WILD-TYPE 161 182 101 19

Figure S4212.  Get High-res Image Gene #1571: 'BLM MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'BLM MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0732 (Fisher's exact test), Q value = 0.29

Table S16577.  Gene #1571: 'BLM MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
BLM MUTATED 5 0 5
BLM WILD-TYPE 82 80 95
'BLM MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.166 (Fisher's exact test), Q value = 0.46

Table S16578.  Gene #1571: 'BLM MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
BLM MUTATED 1 5 8
BLM WILD-TYPE 88 155 130
'BLM MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.363 (Fisher's exact test), Q value = 0.69

Table S16579.  Gene #1571: 'BLM MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
BLM MUTATED 6 7 1
BLM WILD-TYPE 176 126 71
'BLM MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.226 (Fisher's exact test), Q value = 0.54

Table S16580.  Gene #1571: 'BLM MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
BLM MUTATED 1 5 4 9
BLM WILD-TYPE 111 91 88 177
'BLM MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00828 (Fisher's exact test), Q value = 0.085

Table S16581.  Gene #1571: 'BLM MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
BLM MUTATED 2 2 6 0 1 1 7
BLM WILD-TYPE 58 48 43 40 62 124 92

Figure S4213.  Get High-res Image Gene #1571: 'BLM MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'BLM MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.626 (Fisher's exact test), Q value = 0.92

Table S16582.  Gene #1571: 'BLM MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
BLM MUTATED 4 3 1 10
BLM WILD-TYPE 126 75 67 186
'BLM MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0163 (Fisher's exact test), Q value = 0.13

Table S16583.  Gene #1571: 'BLM MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
BLM MUTATED 1 3 3 0 6 0 3 1 1
BLM WILD-TYPE 39 59 25 80 63 48 40 27 73

Figure S4214.  Get High-res Image Gene #1571: 'BLM MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'BLM MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.358 (Fisher's exact test), Q value = 0.69

Table S16584.  Gene #1571: 'BLM MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
BLM MUTATED 1 1 0 2
BLM WILD-TYPE 32 30 27 17
'BLM MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.43 (Fisher's exact test), Q value = 0.76

Table S16585.  Gene #1571: 'BLM MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
BLM MUTATED 4 0 0 0
BLM WILD-TYPE 50 10 24 22
'CLCN3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.257 (Fisher's exact test), Q value = 0.58

Table S16586.  Gene #1572: 'CLCN3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
CLCN3 MUTATED 2 0 1 2
CLCN3 WILD-TYPE 44 58 63 41
'CLCN3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.253 (Fisher's exact test), Q value = 0.58

Table S16587.  Gene #1572: 'CLCN3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
CLCN3 MUTATED 3 1 1
CLCN3 WILD-TYPE 48 82 76
'CLCN3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.046 (Fisher's exact test), Q value = 0.23

Table S16588.  Gene #1572: 'CLCN3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
CLCN3 MUTATED 10 2 1 0
CLCN3 WILD-TYPE 168 181 100 20

Figure S4215.  Get High-res Image Gene #1572: 'CLCN3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'CLCN3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.224 (Fisher's exact test), Q value = 0.54

Table S16589.  Gene #1572: 'CLCN3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
CLCN3 MUTATED 5 1 2
CLCN3 WILD-TYPE 82 79 98
'CLCN3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0206 (Fisher's exact test), Q value = 0.14

Table S16590.  Gene #1572: 'CLCN3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
CLCN3 MUTATED 1 2 9
CLCN3 WILD-TYPE 88 158 129

Figure S4216.  Get High-res Image Gene #1572: 'CLCN3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'CLCN3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.103 (Fisher's exact test), Q value = 0.36

Table S16591.  Gene #1572: 'CLCN3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
CLCN3 MUTATED 9 3 0
CLCN3 WILD-TYPE 173 130 72
'CLCN3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.437 (Fisher's exact test), Q value = 0.76

Table S16592.  Gene #1572: 'CLCN3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
CLCN3 MUTATED 1 3 4 5
CLCN3 WILD-TYPE 111 93 88 181
'CLCN3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00868 (Fisher's exact test), Q value = 0.087

Table S16593.  Gene #1572: 'CLCN3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
CLCN3 MUTATED 0 0 5 0 3 1 4
CLCN3 WILD-TYPE 60 50 44 40 60 124 95

Figure S4217.  Get High-res Image Gene #1572: 'CLCN3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CLCN3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.308 (Fisher's exact test), Q value = 0.64

Table S16594.  Gene #1572: 'CLCN3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
CLCN3 MUTATED 5 3 0 4
CLCN3 WILD-TYPE 125 75 68 192
'CLCN3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0138 (Fisher's exact test), Q value = 0.12

Table S16595.  Gene #1572: 'CLCN3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
CLCN3 MUTATED 0 6 1 1 3 0 0 1 0
CLCN3 WILD-TYPE 40 56 27 79 66 48 43 27 74

Figure S4218.  Get High-res Image Gene #1572: 'CLCN3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'CLCN3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.415 (Fisher's exact test), Q value = 0.74

Table S16596.  Gene #1572: 'CLCN3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
CLCN3 MUTATED 1 3 0 1
CLCN3 WILD-TYPE 32 28 27 18
'CLCN3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.266 (Fisher's exact test), Q value = 0.59

Table S16597.  Gene #1572: 'CLCN3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
CLCN3 MUTATED 4 1 0 0
CLCN3 WILD-TYPE 50 9 24 22
'ANKRD40 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.662 (Fisher's exact test), Q value = 0.95

Table S16598.  Gene #1573: 'ANKRD40 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ANKRD40 MUTATED 1 0 2 1
ANKRD40 WILD-TYPE 45 58 62 42
'ANKRD40 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.557 (Fisher's exact test), Q value = 0.87

Table S16599.  Gene #1573: 'ANKRD40 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ANKRD40 MUTATED 2 1 1
ANKRD40 WILD-TYPE 49 82 76
'ANKRD40 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0749 (Fisher's exact test), Q value = 0.29

Table S16600.  Gene #1573: 'ANKRD40 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ANKRD40 MUTATED 6 2 0 1
ANKRD40 WILD-TYPE 172 181 101 19
'ANKRD40 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.013 (Fisher's exact test), Q value = 0.11

Table S16601.  Gene #1573: 'ANKRD40 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ANKRD40 MUTATED 0 0 5
ANKRD40 WILD-TYPE 87 80 95

Figure S4219.  Get High-res Image Gene #1573: 'ANKRD40 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'ANKRD40 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.895 (Fisher's exact test), Q value = 1

Table S16602.  Gene #1573: 'ANKRD40 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ANKRD40 MUTATED 2 3 2
ANKRD40 WILD-TYPE 87 157 136
'ANKRD40 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.219 (Fisher's exact test), Q value = 0.53

Table S16603.  Gene #1573: 'ANKRD40 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ANKRD40 MUTATED 3 1 3
ANKRD40 WILD-TYPE 179 132 69
'ANKRD40 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.32 (Fisher's exact test), Q value = 0.65

Table S16604.  Gene #1573: 'ANKRD40 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ANKRD40 MUTATED 0 3 2 4
ANKRD40 WILD-TYPE 112 93 90 182
'ANKRD40 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00416 (Fisher's exact test), Q value = 0.059

Table S16605.  Gene #1573: 'ANKRD40 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ANKRD40 MUTATED 0 0 5 0 0 1 3
ANKRD40 WILD-TYPE 60 50 44 40 63 124 96

Figure S4220.  Get High-res Image Gene #1573: 'ANKRD40 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ANKRD40 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.523 (Fisher's exact test), Q value = 0.84

Table S16606.  Gene #1573: 'ANKRD40 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ANKRD40 MUTATED 4 0 1 4
ANKRD40 WILD-TYPE 126 78 67 192
'ANKRD40 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.448 (Fisher's exact test), Q value = 0.77

Table S16607.  Gene #1573: 'ANKRD40 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ANKRD40 MUTATED 1 1 0 0 4 1 1 0 1
ANKRD40 WILD-TYPE 39 61 28 80 65 47 42 28 73
'ANKRD40 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00432 (Fisher's exact test), Q value = 0.06

Table S16608.  Gene #1573: 'ANKRD40 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
ANKRD40 MUTATED 0 0 0 3
ANKRD40 WILD-TYPE 33 31 27 16

Figure S4221.  Get High-res Image Gene #1573: 'ANKRD40 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'ANKRD40 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S16609.  Gene #1573: 'ANKRD40 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
ANKRD40 MUTATED 2 0 1 0
ANKRD40 WILD-TYPE 52 10 23 22
'SNAPC2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0226 (Fisher's exact test), Q value = 0.15

Table S16610.  Gene #1574: 'SNAPC2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
SNAPC2 MUTATED 6 0 0 0
SNAPC2 WILD-TYPE 172 183 101 20

Figure S4222.  Get High-res Image Gene #1574: 'SNAPC2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'SNAPC2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0361 (Fisher's exact test), Q value = 0.2

Table S16611.  Gene #1574: 'SNAPC2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
SNAPC2 MUTATED 0 0 4
SNAPC2 WILD-TYPE 87 80 96

Figure S4223.  Get High-res Image Gene #1574: 'SNAPC2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'SNAPC2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S16612.  Gene #1574: 'SNAPC2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
SNAPC2 MUTATED 1 1 1
SNAPC2 WILD-TYPE 88 159 137
'SNAPC2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.77 (Fisher's exact test), Q value = 1

Table S16613.  Gene #1574: 'SNAPC2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
SNAPC2 MUTATED 1 1 1
SNAPC2 WILD-TYPE 181 132 71
'SNAPC2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.037 (Fisher's exact test), Q value = 0.2

Table S16614.  Gene #1574: 'SNAPC2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
SNAPC2 MUTATED 0 4 0 2
SNAPC2 WILD-TYPE 112 92 92 184

Figure S4224.  Get High-res Image Gene #1574: 'SNAPC2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'SNAPC2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0223 (Fisher's exact test), Q value = 0.15

Table S16615.  Gene #1574: 'SNAPC2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
SNAPC2 MUTATED 0 0 3 1 0 0 2
SNAPC2 WILD-TYPE 60 50 46 39 63 125 97

Figure S4225.  Get High-res Image Gene #1574: 'SNAPC2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'SNAPC2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.259 (Fisher's exact test), Q value = 0.58

Table S16616.  Gene #1574: 'SNAPC2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
SNAPC2 MUTATED 4 0 0 2
SNAPC2 WILD-TYPE 126 78 68 194
'SNAPC2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00602 (Fisher's exact test), Q value = 0.071

Table S16617.  Gene #1574: 'SNAPC2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
SNAPC2 MUTATED 1 0 0 0 5 0 0 0 0
SNAPC2 WILD-TYPE 39 62 28 80 64 48 43 28 74

Figure S4226.  Get High-res Image Gene #1574: 'SNAPC2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'UPF3B MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0505 (Fisher's exact test), Q value = 0.24

Table S16618.  Gene #1575: 'UPF3B MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
UPF3B MUTATED 0 0 1 3
UPF3B WILD-TYPE 46 58 63 40
'UPF3B MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.833 (Fisher's exact test), Q value = 1

Table S16619.  Gene #1575: 'UPF3B MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
UPF3B MUTATED 1 1 2
UPF3B WILD-TYPE 50 82 75
'UPF3B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.91 (Fisher's exact test), Q value = 1

Table S16620.  Gene #1575: 'UPF3B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
UPF3B MUTATED 4 4 3 0
UPF3B WILD-TYPE 174 179 98 20
'UPF3B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.891 (Fisher's exact test), Q value = 1

Table S16621.  Gene #1575: 'UPF3B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
UPF3B MUTATED 3 2 2
UPF3B WILD-TYPE 84 78 98
'UPF3B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.833 (Fisher's exact test), Q value = 1

Table S16622.  Gene #1575: 'UPF3B MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
UPF3B MUTATED 1 4 4
UPF3B WILD-TYPE 88 156 134
'UPF3B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.912 (Fisher's exact test), Q value = 1

Table S16623.  Gene #1575: 'UPF3B MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
UPF3B MUTATED 4 3 2
UPF3B WILD-TYPE 178 130 70
'UPF3B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.741 (Fisher's exact test), Q value = 1

Table S16624.  Gene #1575: 'UPF3B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
UPF3B MUTATED 2 1 3 5
UPF3B WILD-TYPE 110 95 89 181
'UPF3B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.986 (Fisher's exact test), Q value = 1

Table S16625.  Gene #1575: 'UPF3B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
UPF3B MUTATED 1 1 1 1 2 2 3
UPF3B WILD-TYPE 59 49 48 39 61 123 96
'UPF3B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.151 (Fisher's exact test), Q value = 0.44

Table S16626.  Gene #1575: 'UPF3B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
UPF3B MUTATED 2 4 0 3
UPF3B WILD-TYPE 128 74 68 193
'UPF3B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.166 (Fisher's exact test), Q value = 0.46

Table S16627.  Gene #1575: 'UPF3B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
UPF3B MUTATED 1 2 2 3 0 1 0 0 0
UPF3B WILD-TYPE 39 60 26 77 69 47 43 28 74
'LMTK3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00595 (Fisher's exact test), Q value = 0.07

Table S16628.  Gene #1576: 'LMTK3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
LMTK3 MUTATED 13 2 1 0
LMTK3 WILD-TYPE 165 181 100 20

Figure S4227.  Get High-res Image Gene #1576: 'LMTK3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'LMTK3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.374 (Fisher's exact test), Q value = 0.7

Table S16629.  Gene #1576: 'LMTK3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
LMTK3 MUTATED 6 2 7
LMTK3 WILD-TYPE 81 78 93
'LMTK3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.211 (Fisher's exact test), Q value = 0.52

Table S16630.  Gene #1576: 'LMTK3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
LMTK3 MUTATED 1 6 8
LMTK3 WILD-TYPE 88 154 130
'LMTK3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.572 (Fisher's exact test), Q value = 0.88

Table S16631.  Gene #1576: 'LMTK3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
LMTK3 MUTATED 8 6 1
LMTK3 WILD-TYPE 174 127 71
'LMTK3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00602 (Fisher's exact test), Q value = 0.071

Table S16632.  Gene #1576: 'LMTK3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
LMTK3 MUTATED 3 6 6 1
LMTK3 WILD-TYPE 109 90 86 185

Figure S4228.  Get High-res Image Gene #1576: 'LMTK3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'LMTK3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00016 (Fisher's exact test), Q value = 0.0072

Table S16633.  Gene #1576: 'LMTK3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
LMTK3 MUTATED 2 2 7 0 4 0 1
LMTK3 WILD-TYPE 58 48 42 40 59 125 98

Figure S4229.  Get High-res Image Gene #1576: 'LMTK3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'LMTK3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00016 (Fisher's exact test), Q value = 0.0072

Table S16634.  Gene #1576: 'LMTK3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
LMTK3 MUTATED 8 7 0 1
LMTK3 WILD-TYPE 122 71 68 195

Figure S4230.  Get High-res Image Gene #1576: 'LMTK3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'LMTK3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00507 (Fisher's exact test), Q value = 0.064

Table S16635.  Gene #1576: 'LMTK3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
LMTK3 MUTATED 2 7 2 0 3 1 1 0 0
LMTK3 WILD-TYPE 38 55 26 80 66 47 42 28 74

Figure S4231.  Get High-res Image Gene #1576: 'LMTK3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'LMTK3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00264 (Fisher's exact test), Q value = 0.045

Table S16636.  Gene #1576: 'LMTK3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
LMTK3 MUTATED 0 1 0 4
LMTK3 WILD-TYPE 33 30 27 15

Figure S4232.  Get High-res Image Gene #1576: 'LMTK3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'LMTK3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.381 (Fisher's exact test), Q value = 0.71

Table S16637.  Gene #1576: 'LMTK3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
LMTK3 MUTATED 2 1 2 0
LMTK3 WILD-TYPE 52 9 22 22
'FCAMR MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00237 (Fisher's exact test), Q value = 0.042

Table S16638.  Gene #1577: 'FCAMR MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
FCAMR MUTATED 11 1 0 0
FCAMR WILD-TYPE 167 182 101 20

Figure S4233.  Get High-res Image Gene #1577: 'FCAMR MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'FCAMR MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0683 (Fisher's exact test), Q value = 0.28

Table S16639.  Gene #1577: 'FCAMR MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
FCAMR MUTATED 4 0 6
FCAMR WILD-TYPE 83 80 94
'FCAMR MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.427 (Fisher's exact test), Q value = 0.75

Table S16640.  Gene #1577: 'FCAMR MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
FCAMR MUTATED 2 3 6
FCAMR WILD-TYPE 87 157 132
'FCAMR MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.724 (Fisher's exact test), Q value = 0.99

Table S16641.  Gene #1577: 'FCAMR MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
FCAMR MUTATED 4 5 2
FCAMR WILD-TYPE 178 128 70
'FCAMR MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00748 (Fisher's exact test), Q value = 0.08

Table S16642.  Gene #1577: 'FCAMR MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
FCAMR MUTATED 0 5 5 2
FCAMR WILD-TYPE 112 91 87 184

Figure S4234.  Get High-res Image Gene #1577: 'FCAMR MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'FCAMR MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S16643.  Gene #1577: 'FCAMR MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
FCAMR MUTATED 1 1 8 1 0 1 0
FCAMR WILD-TYPE 59 49 41 39 63 124 99

Figure S4235.  Get High-res Image Gene #1577: 'FCAMR MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'FCAMR MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.845 (Fisher's exact test), Q value = 1

Table S16644.  Gene #1577: 'FCAMR MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
FCAMR MUTATED 3 3 1 5
FCAMR WILD-TYPE 127 75 67 191
'FCAMR MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0375 (Fisher's exact test), Q value = 0.2

Table S16645.  Gene #1577: 'FCAMR MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
FCAMR MUTATED 1 3 0 0 6 0 0 0 2
FCAMR WILD-TYPE 39 59 28 80 63 48 43 28 72

Figure S4236.  Get High-res Image Gene #1577: 'FCAMR MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'FCAMR MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00356 (Fisher's exact test), Q value = 0.054

Table S16646.  Gene #1577: 'FCAMR MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
FCAMR MUTATED 1 0 0 4
FCAMR WILD-TYPE 32 31 27 15

Figure S4237.  Get High-res Image Gene #1577: 'FCAMR MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'FCAMR MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.191 (Fisher's exact test), Q value = 0.49

Table S16647.  Gene #1577: 'FCAMR MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
FCAMR MUTATED 2 0 3 0
FCAMR WILD-TYPE 52 10 21 22
'XCL2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.734 (Fisher's exact test), Q value = 1

Table S16648.  Gene #1578: 'XCL2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
XCL2 MUTATED 2 2 0 0
XCL2 WILD-TYPE 176 181 101 20
'XCL2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.779 (Fisher's exact test), Q value = 1

Table S16649.  Gene #1578: 'XCL2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
XCL2 MUTATED 1 0 2
XCL2 WILD-TYPE 86 80 98
'XCL2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.795 (Fisher's exact test), Q value = 1

Table S16650.  Gene #1578: 'XCL2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
XCL2 MUTATED 0 2 1
XCL2 WILD-TYPE 89 158 137
'XCL2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.591 (Fisher's exact test), Q value = 0.9

Table S16651.  Gene #1578: 'XCL2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
XCL2 MUTATED 1 2 0
XCL2 WILD-TYPE 181 131 72
'XCL2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.303 (Fisher's exact test), Q value = 0.63

Table S16652.  Gene #1578: 'XCL2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
XCL2 MUTATED 0 2 1 1
XCL2 WILD-TYPE 112 94 91 185
'XCL2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.288 (Fisher's exact test), Q value = 0.62

Table S16653.  Gene #1578: 'XCL2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
XCL2 MUTATED 1 0 1 1 0 0 1
XCL2 WILD-TYPE 59 50 48 39 63 125 98
'XCL2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.535 (Fisher's exact test), Q value = 0.85

Table S16654.  Gene #1578: 'XCL2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
XCL2 MUTATED 2 0 1 1
XCL2 WILD-TYPE 128 78 67 195
'XCL2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.635 (Fisher's exact test), Q value = 0.93

Table S16655.  Gene #1578: 'XCL2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
XCL2 MUTATED 0 0 0 1 2 0 1 0 0
XCL2 WILD-TYPE 40 62 28 79 67 48 42 28 74
'AASS MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.137 (Fisher's exact test), Q value = 0.41

Table S16656.  Gene #1579: 'AASS MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
AASS MUTATED 3 0 2 3
AASS WILD-TYPE 43 58 62 40
'AASS MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.13 (Fisher's exact test), Q value = 0.4

Table S16657.  Gene #1579: 'AASS MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
AASS MUTATED 4 1 3
AASS WILD-TYPE 47 82 74
'AASS MUTATION STATUS' versus 'CN_CNMF'

P value = 0.123 (Fisher's exact test), Q value = 0.39

Table S16658.  Gene #1579: 'AASS MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
AASS MUTATED 9 2 2 0
AASS WILD-TYPE 169 181 99 20
'AASS MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.53 (Fisher's exact test), Q value = 0.85

Table S16659.  Gene #1579: 'AASS MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
AASS MUTATED 3 1 1
AASS WILD-TYPE 84 79 99
'AASS MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.763 (Fisher's exact test), Q value = 1

Table S16660.  Gene #1579: 'AASS MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
AASS MUTATED 3 3 3
AASS WILD-TYPE 86 157 135
'AASS MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.451 (Fisher's exact test), Q value = 0.78

Table S16661.  Gene #1579: 'AASS MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
AASS MUTATED 3 3 3
AASS WILD-TYPE 179 130 69
'AASS MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.311 (Fisher's exact test), Q value = 0.64

Table S16662.  Gene #1579: 'AASS MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
AASS MUTATED 1 4 1 7
AASS WILD-TYPE 111 92 91 179
'AASS MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0523 (Fisher's exact test), Q value = 0.25

Table S16663.  Gene #1579: 'AASS MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
AASS MUTATED 2 0 3 1 0 1 6
AASS WILD-TYPE 58 50 46 39 63 124 93
'AASS MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.309 (Fisher's exact test), Q value = 0.64

Table S16664.  Gene #1579: 'AASS MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
AASS MUTATED 3 0 2 8
AASS WILD-TYPE 127 78 66 188
'AASS MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.247 (Fisher's exact test), Q value = 0.57

Table S16665.  Gene #1579: 'AASS MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
AASS MUTATED 0 2 1 1 6 1 1 0 1
AASS WILD-TYPE 40 60 27 79 63 47 42 28 73
'CCNH MUTATION STATUS' versus 'CN_CNMF'

P value = 0.327 (Fisher's exact test), Q value = 0.66

Table S16666.  Gene #1580: 'CCNH MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
CCNH MUTATED 5 1 1 0
CCNH WILD-TYPE 173 182 100 20
'CCNH MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.529 (Fisher's exact test), Q value = 0.85

Table S16667.  Gene #1580: 'CCNH MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
CCNH MUTATED 3 1 1
CCNH WILD-TYPE 84 79 99
'CCNH MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.005 (Fisher's exact test), Q value = 0.064

Table S16668.  Gene #1580: 'CCNH MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
CCNH MUTATED 0 0 6
CCNH WILD-TYPE 89 160 132

Figure S4238.  Get High-res Image Gene #1580: 'CCNH MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'CCNH MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.336 (Fisher's exact test), Q value = 0.66

Table S16669.  Gene #1580: 'CCNH MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
CCNH MUTATED 5 1 0
CCNH WILD-TYPE 177 132 72
'CCNH MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0973 (Fisher's exact test), Q value = 0.34

Table S16670.  Gene #1580: 'CCNH MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
CCNH MUTATED 1 0 4 2
CCNH WILD-TYPE 111 96 88 184
'CCNH MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.297 (Fisher's exact test), Q value = 0.63

Table S16671.  Gene #1580: 'CCNH MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
CCNH MUTATED 1 1 2 0 1 0 2
CCNH WILD-TYPE 59 49 47 40 62 125 97
'CCNH MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.377 (Fisher's exact test), Q value = 0.71

Table S16672.  Gene #1580: 'CCNH MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
CCNH MUTATED 2 2 1 1
CCNH WILD-TYPE 128 76 67 195
'CCNH MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0867 (Fisher's exact test), Q value = 0.32

Table S16673.  Gene #1580: 'CCNH MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
CCNH MUTATED 0 3 0 0 1 0 2 0 0
CCNH WILD-TYPE 40 59 28 80 68 48 41 28 74
'CCNH MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.085 (Fisher's exact test), Q value = 0.32

Table S16674.  Gene #1580: 'CCNH MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
CCNH MUTATED 0 1 0 2
CCNH WILD-TYPE 33 30 27 17
'CCNH MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.562 (Fisher's exact test), Q value = 0.87

Table S16675.  Gene #1580: 'CCNH MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
CCNH MUTATED 3 0 0 0
CCNH WILD-TYPE 51 10 24 22
'ITGA4 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0298 (Fisher's exact test), Q value = 0.18

Table S16676.  Gene #1581: 'ITGA4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ITGA4 MUTATED 1 1 0 4
ITGA4 WILD-TYPE 45 57 64 39

Figure S4239.  Get High-res Image Gene #1581: 'ITGA4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'ITGA4 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.879 (Fisher's exact test), Q value = 1

Table S16677.  Gene #1581: 'ITGA4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ITGA4 MUTATED 1 2 3
ITGA4 WILD-TYPE 50 81 74
'ITGA4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0534 (Fisher's exact test), Q value = 0.25

Table S16678.  Gene #1581: 'ITGA4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ITGA4 MUTATED 12 4 1 0
ITGA4 WILD-TYPE 166 179 100 20
'ITGA4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.465 (Fisher's exact test), Q value = 0.79

Table S16679.  Gene #1581: 'ITGA4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ITGA4 MUTATED 2 3 6
ITGA4 WILD-TYPE 85 77 94
'ITGA4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.94 (Fisher's exact test), Q value = 1

Table S16680.  Gene #1581: 'ITGA4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ITGA4 MUTATED 3 5 6
ITGA4 WILD-TYPE 86 155 132
'ITGA4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.555 (Fisher's exact test), Q value = 0.87

Table S16681.  Gene #1581: 'ITGA4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ITGA4 MUTATED 7 6 1
ITGA4 WILD-TYPE 175 127 71
'ITGA4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.603 (Fisher's exact test), Q value = 0.91

Table S16682.  Gene #1581: 'ITGA4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ITGA4 MUTATED 2 5 3 7
ITGA4 WILD-TYPE 110 91 89 179
'ITGA4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.087 (Fisher's exact test), Q value = 0.32

Table S16683.  Gene #1581: 'ITGA4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ITGA4 MUTATED 1 1 6 1 2 2 4
ITGA4 WILD-TYPE 59 49 43 39 61 123 95
'ITGA4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.576 (Fisher's exact test), Q value = 0.88

Table S16684.  Gene #1581: 'ITGA4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ITGA4 MUTATED 6 4 1 6
ITGA4 WILD-TYPE 124 74 67 190
'ITGA4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.141 (Fisher's exact test), Q value = 0.42

Table S16685.  Gene #1581: 'ITGA4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ITGA4 MUTATED 1 4 2 2 5 0 0 2 1
ITGA4 WILD-TYPE 39 58 26 78 64 48 43 26 73
'ITGA4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00145 (Fisher's exact test), Q value = 0.031

Table S16686.  Gene #1581: 'ITGA4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
ITGA4 MUTATED 0 1 1 5
ITGA4 WILD-TYPE 33 30 26 14

Figure S4240.  Get High-res Image Gene #1581: 'ITGA4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'ITGA4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.148 (Fisher's exact test), Q value = 0.43

Table S16687.  Gene #1581: 'ITGA4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
ITGA4 MUTATED 3 2 2 0
ITGA4 WILD-TYPE 51 8 22 22
'ST18 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.114 (Fisher's exact test), Q value = 0.37

Table S16688.  Gene #1582: 'ST18 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ST18 MUTATED 2 0 1 3
ST18 WILD-TYPE 44 58 63 40
'ST18 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.659 (Fisher's exact test), Q value = 0.95

Table S16689.  Gene #1582: 'ST18 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ST18 MUTATED 2 3 1
ST18 WILD-TYPE 49 80 76
'ST18 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00025 (Fisher's exact test), Q value = 0.0096

Table S16690.  Gene #1582: 'ST18 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ST18 MUTATED 18 2 4 3
ST18 WILD-TYPE 160 181 97 17

Figure S4241.  Get High-res Image Gene #1582: 'ST18 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ST18 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0758 (Fisher's exact test), Q value = 0.3

Table S16691.  Gene #1582: 'ST18 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ST18 MUTATED 8 2 11
ST18 WILD-TYPE 79 78 89
'ST18 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0904 (Fisher's exact test), Q value = 0.33

Table S16692.  Gene #1582: 'ST18 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ST18 MUTATED 2 9 13
ST18 WILD-TYPE 87 151 125
'ST18 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0697 (Fisher's exact test), Q value = 0.28

Table S16693.  Gene #1582: 'ST18 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ST18 MUTATED 17 5 2
ST18 WILD-TYPE 165 128 70
'ST18 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0153 (Fisher's exact test), Q value = 0.12

Table S16694.  Gene #1582: 'ST18 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ST18 MUTATED 2 10 8 7
ST18 WILD-TYPE 110 86 84 179

Figure S4242.  Get High-res Image Gene #1582: 'ST18 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'ST18 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00175 (Fisher's exact test), Q value = 0.035

Table S16695.  Gene #1582: 'ST18 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ST18 MUTATED 4 2 9 4 1 2 5
ST18 WILD-TYPE 56 48 40 36 62 123 94

Figure S4243.  Get High-res Image Gene #1582: 'ST18 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ST18 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0084 (Fisher's exact test), Q value = 0.085

Table S16696.  Gene #1582: 'ST18 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ST18 MUTATED 13 6 1 5
ST18 WILD-TYPE 117 72 67 191

Figure S4244.  Get High-res Image Gene #1582: 'ST18 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'ST18 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.359 (Fisher's exact test), Q value = 0.69

Table S16697.  Gene #1582: 'ST18 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ST18 MUTATED 5 4 2 2 5 1 3 1 2
ST18 WILD-TYPE 35 58 26 78 64 47 40 27 72
'ST18 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.627 (Fisher's exact test), Q value = 0.92

Table S16698.  Gene #1582: 'ST18 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
ST18 MUTATED 2 2 0 1
ST18 WILD-TYPE 31 29 27 18
'ST18 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.266 (Fisher's exact test), Q value = 0.59

Table S16699.  Gene #1582: 'ST18 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
ST18 MUTATED 5 0 0 0
ST18 WILD-TYPE 49 10 24 22
'SECISBP2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.477 (Fisher's exact test), Q value = 0.81

Table S16700.  Gene #1583: 'SECISBP2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
SECISBP2 MUTATED 3 2 2 1
SECISBP2 WILD-TYPE 175 181 99 19
'SECISBP2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S16701.  Gene #1583: 'SECISBP2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
SECISBP2 MUTATED 2 2 2
SECISBP2 WILD-TYPE 85 78 98
'SECISBP2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.617 (Fisher's exact test), Q value = 0.92

Table S16702.  Gene #1583: 'SECISBP2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
SECISBP2 MUTATED 1 2 4
SECISBP2 WILD-TYPE 88 158 134
'SECISBP2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.682 (Fisher's exact test), Q value = 0.96

Table S16703.  Gene #1583: 'SECISBP2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
SECISBP2 MUTATED 4 3 0
SECISBP2 WILD-TYPE 178 130 72
'SECISBP2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.69 (Fisher's exact test), Q value = 0.97

Table S16704.  Gene #1583: 'SECISBP2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
SECISBP2 MUTATED 3 1 2 2
SECISBP2 WILD-TYPE 109 95 90 184
'SECISBP2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.15 (Fisher's exact test), Q value = 0.43

Table S16705.  Gene #1583: 'SECISBP2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
SECISBP2 MUTATED 2 0 1 2 1 0 2
SECISBP2 WILD-TYPE 58 50 48 38 62 125 97
'SECISBP2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.635 (Fisher's exact test), Q value = 0.93

Table S16706.  Gene #1583: 'SECISBP2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
SECISBP2 MUTATED 3 2 0 3
SECISBP2 WILD-TYPE 127 76 68 193
'SECISBP2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.634 (Fisher's exact test), Q value = 0.93

Table S16707.  Gene #1583: 'SECISBP2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
SECISBP2 MUTATED 0 2 1 2 2 0 1 0 0
SECISBP2 WILD-TYPE 40 60 27 78 67 48 42 28 74
'GPX8 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.278 (Fisher's exact test), Q value = 0.6

Table S16708.  Gene #1584: 'GPX8 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
GPX8 MUTATED 3 0 0 0
GPX8 WILD-TYPE 175 183 101 20
'GPX8 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.794 (Fisher's exact test), Q value = 1

Table S16709.  Gene #1584: 'GPX8 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
GPX8 MUTATED 0 2 1
GPX8 WILD-TYPE 89 158 137
'GPX8 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0825 (Fisher's exact test), Q value = 0.31

Table S16710.  Gene #1584: 'GPX8 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
GPX8 MUTATED 0 3 0
GPX8 WILD-TYPE 182 130 72
'GPX8 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.692 (Fisher's exact test), Q value = 0.97

Table S16711.  Gene #1584: 'GPX8 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
GPX8 MUTATED 0 1 0 2
GPX8 WILD-TYPE 112 95 92 184
'GPX8 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.412 (Fisher's exact test), Q value = 0.74

Table S16712.  Gene #1584: 'GPX8 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
GPX8 MUTATED 1 1 0 0 0 0 1
GPX8 WILD-TYPE 59 49 49 40 63 125 98
'GPX8 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.389 (Fisher's exact test), Q value = 0.72

Table S16713.  Gene #1584: 'GPX8 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
GPX8 MUTATED 0 0 0 3
GPX8 WILD-TYPE 130 78 68 193
'GPX8 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.66 (Fisher's exact test), Q value = 0.95

Table S16714.  Gene #1584: 'GPX8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
GPX8 MUTATED 0 0 0 0 1 0 0 0 2
GPX8 WILD-TYPE 40 62 28 80 68 48 43 28 72
'C6ORF150 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0159 (Fisher's exact test), Q value = 0.13

Table S16715.  Gene #1585: 'C6ORF150 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
C6ORF150 MUTATED 1 0 0 3
C6ORF150 WILD-TYPE 45 58 64 40

Figure S4245.  Get High-res Image Gene #1585: 'C6ORF150 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'C6ORF150 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.555 (Fisher's exact test), Q value = 0.87

Table S16716.  Gene #1585: 'C6ORF150 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
C6ORF150 MUTATED 2 1 1
C6ORF150 WILD-TYPE 49 82 76
'C6ORF150 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.275 (Fisher's exact test), Q value = 0.6

Table S16717.  Gene #1585: 'C6ORF150 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
C6ORF150 MUTATED 7 2 1 0
C6ORF150 WILD-TYPE 171 181 100 20
'C6ORF150 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.139 (Fisher's exact test), Q value = 0.41

Table S16718.  Gene #1585: 'C6ORF150 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
C6ORF150 MUTATED 4 0 2
C6ORF150 WILD-TYPE 83 80 98
'C6ORF150 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.604 (Fisher's exact test), Q value = 0.91

Table S16719.  Gene #1585: 'C6ORF150 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
C6ORF150 MUTATED 1 4 5
C6ORF150 WILD-TYPE 88 156 133
'C6ORF150 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.763 (Fisher's exact test), Q value = 1

Table S16720.  Gene #1585: 'C6ORF150 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
C6ORF150 MUTATED 6 3 1
C6ORF150 WILD-TYPE 176 130 71
'C6ORF150 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0164 (Fisher's exact test), Q value = 0.13

Table S16721.  Gene #1585: 'C6ORF150 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
C6ORF150 MUTATED 0 0 5 5
C6ORF150 WILD-TYPE 112 96 87 181

Figure S4246.  Get High-res Image Gene #1585: 'C6ORF150 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'C6ORF150 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.161 (Fisher's exact test), Q value = 0.45

Table S16722.  Gene #1585: 'C6ORF150 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
C6ORF150 MUTATED 2 1 2 0 1 0 4
C6ORF150 WILD-TYPE 58 49 47 40 62 125 95
'C6ORF150 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.6 (Fisher's exact test), Q value = 0.9

Table S16723.  Gene #1585: 'C6ORF150 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
C6ORF150 MUTATED 4 1 0 4
C6ORF150 WILD-TYPE 126 77 68 192
'C6ORF150 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.883 (Fisher's exact test), Q value = 1

Table S16724.  Gene #1585: 'C6ORF150 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
C6ORF150 MUTATED 1 2 1 2 2 0 0 0 1
C6ORF150 WILD-TYPE 39 60 27 78 67 48 43 28 73
'NAP1L4 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S16725.  Gene #1586: 'NAP1L4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
NAP1L4 MUTATED 2 2 1 0
NAP1L4 WILD-TYPE 176 181 100 20
'NAP1L4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.833 (Fisher's exact test), Q value = 1

Table S16726.  Gene #1586: 'NAP1L4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
NAP1L4 MUTATED 2 1 1
NAP1L4 WILD-TYPE 85 79 99
'NAP1L4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.14 (Fisher's exact test), Q value = 0.42

Table S16727.  Gene #1586: 'NAP1L4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
NAP1L4 MUTATED 0 1 4
NAP1L4 WILD-TYPE 89 159 134
'NAP1L4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.719 (Fisher's exact test), Q value = 0.99

Table S16728.  Gene #1586: 'NAP1L4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
NAP1L4 MUTATED 3 2 0
NAP1L4 WILD-TYPE 179 131 72
'NAP1L4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.37 (Fisher's exact test), Q value = 0.7

Table S16729.  Gene #1586: 'NAP1L4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
NAP1L4 MUTATED 3 0 1 2
NAP1L4 WILD-TYPE 109 96 91 184
'NAP1L4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0115 (Fisher's exact test), Q value = 0.1

Table S16730.  Gene #1586: 'NAP1L4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
NAP1L4 MUTATED 4 0 1 0 0 0 1
NAP1L4 WILD-TYPE 56 50 48 40 63 125 98

Figure S4247.  Get High-res Image Gene #1586: 'NAP1L4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'NAP1L4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.401 (Fisher's exact test), Q value = 0.73

Table S16731.  Gene #1586: 'NAP1L4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
NAP1L4 MUTATED 2 0 2 2
NAP1L4 WILD-TYPE 128 78 66 194
'NAP1L4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.185 (Fisher's exact test), Q value = 0.49

Table S16732.  Gene #1586: 'NAP1L4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
NAP1L4 MUTATED 1 0 0 0 2 1 2 0 0
NAP1L4 WILD-TYPE 39 62 28 80 67 47 41 28 74
'MANF MUTATION STATUS' versus 'CN_CNMF'

P value = 0.121 (Fisher's exact test), Q value = 0.39

Table S16733.  Gene #1587: 'MANF MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
MANF MUTATED 4 0 0 0
MANF WILD-TYPE 174 183 101 20
'MANF MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.556 (Fisher's exact test), Q value = 0.87

Table S16734.  Gene #1587: 'MANF MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
MANF MUTATED 2 0 2
MANF WILD-TYPE 85 80 98
'MANF MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.793 (Fisher's exact test), Q value = 1

Table S16735.  Gene #1587: 'MANF MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
MANF MUTATED 0 2 1
MANF WILD-TYPE 89 158 137
'MANF MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.422 (Fisher's exact test), Q value = 0.75

Table S16736.  Gene #1587: 'MANF MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
MANF MUTATED 2 0 1
MANF WILD-TYPE 180 133 71
'MANF MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.268 (Fisher's exact test), Q value = 0.59

Table S16737.  Gene #1587: 'MANF MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
MANF MUTATED 0 1 2 1
MANF WILD-TYPE 112 95 90 185
'MANF MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0124 (Fisher's exact test), Q value = 0.11

Table S16738.  Gene #1587: 'MANF MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
MANF MUTATED 0 0 3 0 0 0 1
MANF WILD-TYPE 60 50 46 40 63 125 98

Figure S4248.  Get High-res Image Gene #1587: 'MANF MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'MANF MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.598 (Fisher's exact test), Q value = 0.9

Table S16739.  Gene #1587: 'MANF MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
MANF MUTATED 2 1 0 1
MANF WILD-TYPE 128 77 68 195
'MANF MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.614 (Fisher's exact test), Q value = 0.91

Table S16740.  Gene #1587: 'MANF MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
MANF MUTATED 1 1 0 2 0 0 0 0 0
MANF WILD-TYPE 39 61 28 78 69 48 43 28 74
'CUX1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.258 (Fisher's exact test), Q value = 0.58

Table S16741.  Gene #1588: 'CUX1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
CUX1 MUTATED 2 0 1 2
CUX1 WILD-TYPE 44 58 63 41
'CUX1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.74 (Fisher's exact test), Q value = 1

Table S16742.  Gene #1588: 'CUX1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
CUX1 MUTATED 2 2 1
CUX1 WILD-TYPE 49 81 76
'CUX1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00173 (Fisher's exact test), Q value = 0.034

Table S16743.  Gene #1588: 'CUX1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
CUX1 MUTATED 14 1 2 0
CUX1 WILD-TYPE 164 182 99 20

Figure S4249.  Get High-res Image Gene #1588: 'CUX1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'CUX1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.37 (Fisher's exact test), Q value = 0.7

Table S16744.  Gene #1588: 'CUX1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
CUX1 MUTATED 3 2 7
CUX1 WILD-TYPE 84 78 93
'CUX1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.69 (Fisher's exact test), Q value = 0.97

Table S16745.  Gene #1588: 'CUX1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
CUX1 MUTATED 2 7 5
CUX1 WILD-TYPE 87 153 133
'CUX1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.363 (Fisher's exact test), Q value = 0.69

Table S16746.  Gene #1588: 'CUX1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
CUX1 MUTATED 6 7 1
CUX1 WILD-TYPE 176 126 71
'CUX1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.301 (Fisher's exact test), Q value = 0.63

Table S16747.  Gene #1588: 'CUX1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
CUX1 MUTATED 2 6 4 5
CUX1 WILD-TYPE 110 90 88 181
'CUX1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00067 (Fisher's exact test), Q value = 0.019

Table S16748.  Gene #1588: 'CUX1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
CUX1 MUTATED 0 1 8 0 1 2 5
CUX1 WILD-TYPE 60 49 41 40 62 123 94

Figure S4250.  Get High-res Image Gene #1588: 'CUX1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CUX1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.351 (Fisher's exact test), Q value = 0.68

Table S16749.  Gene #1588: 'CUX1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
CUX1 MUTATED 6 3 0 7
CUX1 WILD-TYPE 124 75 68 189
'CUX1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0036 (Fisher's exact test), Q value = 0.055

Table S16750.  Gene #1588: 'CUX1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
CUX1 MUTATED 1 4 1 1 8 0 0 1 0
CUX1 WILD-TYPE 39 58 27 79 61 48 43 27 74

Figure S4251.  Get High-res Image Gene #1588: 'CUX1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'CUX1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.088 (Fisher's exact test), Q value = 0.32

Table S16751.  Gene #1588: 'CUX1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
CUX1 MUTATED 1 1 0 3
CUX1 WILD-TYPE 32 30 27 16
'CUX1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.382 (Fisher's exact test), Q value = 0.71

Table S16752.  Gene #1588: 'CUX1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
CUX1 MUTATED 2 1 2 0
CUX1 WILD-TYPE 52 9 22 22
'SLC16A5 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0609 (Fisher's exact test), Q value = 0.27

Table S16753.  Gene #1589: 'SLC16A5 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
SLC16A5 MUTATED 3 1 0 0
SLC16A5 WILD-TYPE 43 57 64 43
'SLC16A5 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0612 (Fisher's exact test), Q value = 0.27

Table S16754.  Gene #1589: 'SLC16A5 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
SLC16A5 MUTATED 3 1 0
SLC16A5 WILD-TYPE 48 82 77
'SLC16A5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.387 (Fisher's exact test), Q value = 0.71

Table S16755.  Gene #1589: 'SLC16A5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
SLC16A5 MUTATED 5 4 0 0
SLC16A5 WILD-TYPE 173 179 101 20
'SLC16A5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.737 (Fisher's exact test), Q value = 1

Table S16756.  Gene #1589: 'SLC16A5 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
SLC16A5 MUTATED 2 2 1
SLC16A5 WILD-TYPE 85 78 99
'SLC16A5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0373 (Fisher's exact test), Q value = 0.2

Table S16757.  Gene #1589: 'SLC16A5 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
SLC16A5 MUTATED 1 1 7
SLC16A5 WILD-TYPE 88 159 131

Figure S4252.  Get High-res Image Gene #1589: 'SLC16A5 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'SLC16A5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.402 (Fisher's exact test), Q value = 0.73

Table S16758.  Gene #1589: 'SLC16A5 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
SLC16A5 MUTATED 5 4 0
SLC16A5 WILD-TYPE 177 129 72
'SLC16A5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.893 (Fisher's exact test), Q value = 1

Table S16759.  Gene #1589: 'SLC16A5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
SLC16A5 MUTATED 3 1 2 4
SLC16A5 WILD-TYPE 109 95 90 182
'SLC16A5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.4 (Fisher's exact test), Q value = 0.73

Table S16760.  Gene #1589: 'SLC16A5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
SLC16A5 MUTATED 1 2 0 0 2 1 4
SLC16A5 WILD-TYPE 59 48 49 40 61 124 95
'SLC16A5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.439 (Fisher's exact test), Q value = 0.77

Table S16761.  Gene #1589: 'SLC16A5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
SLC16A5 MUTATED 1 3 1 5
SLC16A5 WILD-TYPE 129 75 67 191
'SLC16A5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.482 (Fisher's exact test), Q value = 0.81

Table S16762.  Gene #1589: 'SLC16A5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
SLC16A5 MUTATED 0 2 1 2 3 0 1 1 0
SLC16A5 WILD-TYPE 40 60 27 78 66 48 42 27 74
'TUBB4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.105 (Fisher's exact test), Q value = 0.36

Table S16763.  Gene #1590: 'TUBB4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
TUBB4 MUTATED 6 1 0 0
TUBB4 WILD-TYPE 172 182 101 20
'TUBB4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.197 (Fisher's exact test), Q value = 0.5

Table S16764.  Gene #1590: 'TUBB4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
TUBB4 MUTATED 1 0 4
TUBB4 WILD-TYPE 86 80 96
'TUBB4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.581 (Fisher's exact test), Q value = 0.89

Table S16765.  Gene #1590: 'TUBB4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
TUBB4 MUTATED 1 4 1
TUBB4 WILD-TYPE 88 156 137
'TUBB4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.246 (Fisher's exact test), Q value = 0.57

Table S16766.  Gene #1590: 'TUBB4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
TUBB4 MUTATED 1 3 2
TUBB4 WILD-TYPE 181 130 70
'TUBB4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.758 (Fisher's exact test), Q value = 1

Table S16767.  Gene #1590: 'TUBB4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
TUBB4 MUTATED 1 2 2 2
TUBB4 WILD-TYPE 111 94 90 184
'TUBB4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.181 (Fisher's exact test), Q value = 0.48

Table S16768.  Gene #1590: 'TUBB4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
TUBB4 MUTATED 1 0 3 0 0 1 2
TUBB4 WILD-TYPE 59 50 46 40 63 124 97
'TUBB4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.904 (Fisher's exact test), Q value = 1

Table S16769.  Gene #1590: 'TUBB4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
TUBB4 MUTATED 2 1 0 4
TUBB4 WILD-TYPE 128 77 68 192
'TUBB4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.134 (Fisher's exact test), Q value = 0.41

Table S16770.  Gene #1590: 'TUBB4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
TUBB4 MUTATED 1 1 1 0 3 0 0 1 0
TUBB4 WILD-TYPE 39 61 27 80 66 48 43 27 74
'SUPT3H MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0318 (Fisher's exact test), Q value = 0.18

Table S16771.  Gene #1591: 'SUPT3H MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
SUPT3H MUTATED 3 0 0 1
SUPT3H WILD-TYPE 43 58 64 42

Figure S4253.  Get High-res Image Gene #1591: 'SUPT3H MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'SUPT3H MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.232 (Fisher's exact test), Q value = 0.55

Table S16772.  Gene #1591: 'SUPT3H MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
SUPT3H MUTATED 2 2 0
SUPT3H WILD-TYPE 49 81 77
'SUPT3H MUTATION STATUS' versus 'CN_CNMF'

P value = 0.168 (Fisher's exact test), Q value = 0.46

Table S16773.  Gene #1591: 'SUPT3H MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
SUPT3H MUTATED 8 2 1 0
SUPT3H WILD-TYPE 170 181 100 20
'SUPT3H MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S16774.  Gene #1591: 'SUPT3H MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
SUPT3H MUTATED 2 2 3
SUPT3H WILD-TYPE 85 78 97
'SUPT3H MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.172 (Fisher's exact test), Q value = 0.47

Table S16775.  Gene #1591: 'SUPT3H MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
SUPT3H MUTATED 0 6 3
SUPT3H WILD-TYPE 89 154 135
'SUPT3H MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.295 (Fisher's exact test), Q value = 0.62

Table S16776.  Gene #1591: 'SUPT3H MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
SUPT3H MUTATED 4 5 0
SUPT3H WILD-TYPE 178 128 72
'SUPT3H MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.739 (Fisher's exact test), Q value = 1

Table S16777.  Gene #1591: 'SUPT3H MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
SUPT3H MUTATED 2 1 3 5
SUPT3H WILD-TYPE 110 95 89 181
'SUPT3H MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.271 (Fisher's exact test), Q value = 0.6

Table S16778.  Gene #1591: 'SUPT3H MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
SUPT3H MUTATED 0 2 2 0 2 1 4
SUPT3H WILD-TYPE 60 48 47 40 61 124 95
'SUPT3H MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.379 (Fisher's exact test), Q value = 0.71

Table S16779.  Gene #1591: 'SUPT3H MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
SUPT3H MUTATED 2 3 0 6
SUPT3H WILD-TYPE 128 75 68 190
'SUPT3H MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.329 (Fisher's exact test), Q value = 0.66

Table S16780.  Gene #1591: 'SUPT3H MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
SUPT3H MUTATED 0 3 2 2 3 0 0 0 1
SUPT3H WILD-TYPE 40 59 26 78 66 48 43 28 73
'FAM151A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0124 (Fisher's exact test), Q value = 0.11

Table S16781.  Gene #1592: 'FAM151A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
FAM151A MUTATED 5 0 0 1
FAM151A WILD-TYPE 173 183 101 19

Figure S4254.  Get High-res Image Gene #1592: 'FAM151A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'FAM151A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.329 (Fisher's exact test), Q value = 0.66

Table S16782.  Gene #1592: 'FAM151A MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
FAM151A MUTATED 3 0 2
FAM151A WILD-TYPE 84 80 98
'FAM151A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0781 (Fisher's exact test), Q value = 0.3

Table S16783.  Gene #1592: 'FAM151A MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
FAM151A MUTATED 0 1 5
FAM151A WILD-TYPE 89 159 133
'FAM151A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.762 (Fisher's exact test), Q value = 1

Table S16784.  Gene #1592: 'FAM151A MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
FAM151A MUTATED 4 1 1
FAM151A WILD-TYPE 178 132 71
'FAM151A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0842 (Fisher's exact test), Q value = 0.31

Table S16785.  Gene #1592: 'FAM151A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
FAM151A MUTATED 0 2 3 1
FAM151A WILD-TYPE 112 94 89 185
'FAM151A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.045 (Fisher's exact test), Q value = 0.23

Table S16786.  Gene #1592: 'FAM151A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
FAM151A MUTATED 0 1 3 0 1 0 1
FAM151A WILD-TYPE 60 49 46 40 62 125 98

Figure S4255.  Get High-res Image Gene #1592: 'FAM151A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'FAM151A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.569 (Fisher's exact test), Q value = 0.88

Table S16787.  Gene #1592: 'FAM151A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
FAM151A MUTATED 2 2 0 2
FAM151A WILD-TYPE 128 76 68 194
'FAM151A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.356 (Fisher's exact test), Q value = 0.68

Table S16788.  Gene #1592: 'FAM151A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
FAM151A MUTATED 0 3 0 1 2 0 0 0 0
FAM151A WILD-TYPE 40 59 28 79 67 48 43 28 74
'HERC1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00109 (Fisher's exact test), Q value = 0.026

Table S16789.  Gene #1593: 'HERC1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
HERC1 MUTATED 7 1 0 3
HERC1 WILD-TYPE 39 57 64 40

Figure S4256.  Get High-res Image Gene #1593: 'HERC1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'HERC1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0102 (Fisher's exact test), Q value = 0.097

Table S16790.  Gene #1593: 'HERC1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
HERC1 MUTATED 7 3 1
HERC1 WILD-TYPE 44 80 76

Figure S4257.  Get High-res Image Gene #1593: 'HERC1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'HERC1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00064 (Fisher's exact test), Q value = 0.018

Table S16791.  Gene #1593: 'HERC1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
HERC1 MUTATED 23 5 4 0
HERC1 WILD-TYPE 155 178 97 20

Figure S4258.  Get High-res Image Gene #1593: 'HERC1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'HERC1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00535 (Fisher's exact test), Q value = 0.066

Table S16792.  Gene #1593: 'HERC1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
HERC1 MUTATED 2 5 15
HERC1 WILD-TYPE 85 75 85

Figure S4259.  Get High-res Image Gene #1593: 'HERC1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'HERC1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.128 (Fisher's exact test), Q value = 0.4

Table S16793.  Gene #1593: 'HERC1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
HERC1 MUTATED 2 12 12
HERC1 WILD-TYPE 87 148 126
'HERC1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.381 (Fisher's exact test), Q value = 0.71

Table S16794.  Gene #1593: 'HERC1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
HERC1 MUTATED 9 12 5
HERC1 WILD-TYPE 173 121 67
'HERC1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.538 (Fisher's exact test), Q value = 0.86

Table S16795.  Gene #1593: 'HERC1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
HERC1 MUTATED 9 9 5 10
HERC1 WILD-TYPE 103 87 87 176
'HERC1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00084 (Fisher's exact test), Q value = 0.022

Table S16796.  Gene #1593: 'HERC1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
HERC1 MUTATED 7 6 8 1 1 2 8
HERC1 WILD-TYPE 53 44 41 39 62 123 91

Figure S4260.  Get High-res Image Gene #1593: 'HERC1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'HERC1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.451 (Fisher's exact test), Q value = 0.78

Table S16797.  Gene #1593: 'HERC1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
HERC1 MUTATED 12 3 3 14
HERC1 WILD-TYPE 118 75 65 182
'HERC1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.399 (Fisher's exact test), Q value = 0.72

Table S16798.  Gene #1593: 'HERC1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
HERC1 MUTATED 2 3 2 8 9 2 3 1 2
HERC1 WILD-TYPE 38 59 26 72 60 46 40 27 72
'HERC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00144 (Fisher's exact test), Q value = 0.031

Table S16799.  Gene #1593: 'HERC1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
HERC1 MUTATED 0 0 1 4
HERC1 WILD-TYPE 33 31 26 15

Figure S4261.  Get High-res Image Gene #1593: 'HERC1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'HERC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.19 (Fisher's exact test), Q value = 0.49

Table S16800.  Gene #1593: 'HERC1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
HERC1 MUTATED 2 0 3 0
HERC1 WILD-TYPE 52 10 21 22
'TBX4 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0163 (Fisher's exact test), Q value = 0.13

Table S16801.  Gene #1594: 'TBX4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
TBX4 MUTATED 1 0 0 3
TBX4 WILD-TYPE 45 58 64 40

Figure S4262.  Get High-res Image Gene #1594: 'TBX4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'TBX4 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0609 (Fisher's exact test), Q value = 0.27

Table S16802.  Gene #1594: 'TBX4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
TBX4 MUTATED 3 1 0
TBX4 WILD-TYPE 48 82 77
'TBX4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00821 (Fisher's exact test), Q value = 0.084

Table S16803.  Gene #1594: 'TBX4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
TBX4 MUTATED 9 0 2 0
TBX4 WILD-TYPE 169 183 99 20

Figure S4263.  Get High-res Image Gene #1594: 'TBX4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'TBX4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.125 (Fisher's exact test), Q value = 0.39

Table S16804.  Gene #1594: 'TBX4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
TBX4 MUTATED 2 0 5
TBX4 WILD-TYPE 85 80 95
'TBX4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.658 (Fisher's exact test), Q value = 0.94

Table S16805.  Gene #1594: 'TBX4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
TBX4 MUTATED 2 3 5
TBX4 WILD-TYPE 87 157 133
'TBX4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.528 (Fisher's exact test), Q value = 0.85

Table S16806.  Gene #1594: 'TBX4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
TBX4 MUTATED 5 2 3
TBX4 WILD-TYPE 177 131 69
'TBX4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0734 (Fisher's exact test), Q value = 0.29

Table S16807.  Gene #1594: 'TBX4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
TBX4 MUTATED 0 5 2 4
TBX4 WILD-TYPE 112 91 90 182
'TBX4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00016 (Fisher's exact test), Q value = 0.0072

Table S16808.  Gene #1594: 'TBX4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
TBX4 MUTATED 0 1 6 0 0 0 4
TBX4 WILD-TYPE 60 49 43 40 63 125 95

Figure S4264.  Get High-res Image Gene #1594: 'TBX4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'TBX4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.703 (Fisher's exact test), Q value = 0.97

Table S16809.  Gene #1594: 'TBX4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
TBX4 MUTATED 3 2 0 5
TBX4 WILD-TYPE 127 76 68 191
'TBX4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0116 (Fisher's exact test), Q value = 0.11

Table S16810.  Gene #1594: 'TBX4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
TBX4 MUTATED 0 3 2 0 4 0 0 1 0
TBX4 WILD-TYPE 40 59 26 80 65 48 43 27 74

Figure S4265.  Get High-res Image Gene #1594: 'TBX4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'TBX4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00467 (Fisher's exact test), Q value = 0.062

Table S16811.  Gene #1594: 'TBX4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
TBX4 MUTATED 0 0 0 3
TBX4 WILD-TYPE 33 31 27 16

Figure S4266.  Get High-res Image Gene #1594: 'TBX4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'TBX4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S16812.  Gene #1594: 'TBX4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
TBX4 MUTATED 2 0 1 0
TBX4 WILD-TYPE 52 10 23 22
'TRIP6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00813 (Fisher's exact test), Q value = 0.084

Table S16813.  Gene #1595: 'TRIP6 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
TRIP6 MUTATED 9 0 2 0
TRIP6 WILD-TYPE 169 183 99 20

Figure S4267.  Get High-res Image Gene #1595: 'TRIP6 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'TRIP6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0126 (Fisher's exact test), Q value = 0.11

Table S16814.  Gene #1595: 'TRIP6 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
TRIP6 MUTATED 2 0 8
TRIP6 WILD-TYPE 85 80 92

Figure S4268.  Get High-res Image Gene #1595: 'TRIP6 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'TRIP6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.656 (Fisher's exact test), Q value = 0.94

Table S16815.  Gene #1595: 'TRIP6 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
TRIP6 MUTATED 2 2 4
TRIP6 WILD-TYPE 87 158 134
'TRIP6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S16816.  Gene #1595: 'TRIP6 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
TRIP6 MUTATED 4 3 1
TRIP6 WILD-TYPE 178 130 71
'TRIP6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 5e-05 (Fisher's exact test), Q value = 0.0032

Table S16817.  Gene #1595: 'TRIP6 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
TRIP6 MUTATED 0 6 5 0
TRIP6 WILD-TYPE 112 90 87 186

Figure S4269.  Get High-res Image Gene #1595: 'TRIP6 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'TRIP6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S16818.  Gene #1595: 'TRIP6 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
TRIP6 MUTATED 0 1 8 1 0 0 1
TRIP6 WILD-TYPE 60 49 41 39 63 125 98

Figure S4270.  Get High-res Image Gene #1595: 'TRIP6 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'TRIP6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0688 (Fisher's exact test), Q value = 0.28

Table S16819.  Gene #1595: 'TRIP6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
TRIP6 MUTATED 6 3 0 2
TRIP6 WILD-TYPE 124 75 68 194
'TRIP6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.331 (Fisher's exact test), Q value = 0.66

Table S16820.  Gene #1595: 'TRIP6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
TRIP6 MUTATED 1 3 0 2 4 0 1 0 0
TRIP6 WILD-TYPE 39 59 28 78 65 48 42 28 74
'TRIP6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0029 (Fisher's exact test), Q value = 0.048

Table S16821.  Gene #1595: 'TRIP6 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
TRIP6 MUTATED 0 1 0 4
TRIP6 WILD-TYPE 33 30 27 15

Figure S4271.  Get High-res Image Gene #1595: 'TRIP6 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'TRIP6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S16822.  Gene #1595: 'TRIP6 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
TRIP6 MUTATED 3 0 1 1
TRIP6 WILD-TYPE 51 10 23 21
'SERPINB5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.737 (Fisher's exact test), Q value = 1

Table S16823.  Gene #1596: 'SERPINB5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
SERPINB5 MUTATED 3 3 0 0
SERPINB5 WILD-TYPE 175 180 101 20
'SERPINB5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.631 (Fisher's exact test), Q value = 0.93

Table S16824.  Gene #1596: 'SERPINB5 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
SERPINB5 MUTATED 1 1 3
SERPINB5 WILD-TYPE 86 79 97
'SERPINB5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.512 (Fisher's exact test), Q value = 0.83

Table S16825.  Gene #1596: 'SERPINB5 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
SERPINB5 MUTATED 0 3 3
SERPINB5 WILD-TYPE 89 157 135
'SERPINB5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S16826.  Gene #1596: 'SERPINB5 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
SERPINB5 MUTATED 3 2 1
SERPINB5 WILD-TYPE 179 131 71
'SERPINB5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.434 (Fisher's exact test), Q value = 0.76

Table S16827.  Gene #1596: 'SERPINB5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
SERPINB5 MUTATED 1 2 2 1
SERPINB5 WILD-TYPE 111 94 90 185
'SERPINB5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.942 (Fisher's exact test), Q value = 1

Table S16828.  Gene #1596: 'SERPINB5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
SERPINB5 MUTATED 1 1 1 0 1 1 1
SERPINB5 WILD-TYPE 59 49 48 40 62 124 98
'SERPINB5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.029 (Fisher's exact test), Q value = 0.17

Table S16829.  Gene #1596: 'SERPINB5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
SERPINB5 MUTATED 0 3 2 1
SERPINB5 WILD-TYPE 130 75 66 195

Figure S4272.  Get High-res Image Gene #1596: 'SERPINB5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'SERPINB5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.419 (Fisher's exact test), Q value = 0.75

Table S16830.  Gene #1596: 'SERPINB5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
SERPINB5 MUTATED 0 3 0 0 1 0 1 0 1
SERPINB5 WILD-TYPE 40 59 28 80 68 48 42 28 73
'HIPK3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0661 (Fisher's exact test), Q value = 0.28

Table S16831.  Gene #1597: 'HIPK3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
HIPK3 MUTATED 1 0 0 2
HIPK3 WILD-TYPE 45 58 64 41
'HIPK3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.185 (Fisher's exact test), Q value = 0.49

Table S16832.  Gene #1597: 'HIPK3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
HIPK3 MUTATED 2 0 1
HIPK3 WILD-TYPE 49 83 76
'HIPK3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.333 (Fisher's exact test), Q value = 0.66

Table S16833.  Gene #1597: 'HIPK3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
HIPK3 MUTATED 5 1 2 0
HIPK3 WILD-TYPE 173 182 99 20
'HIPK3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S16834.  Gene #1597: 'HIPK3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
HIPK3 MUTATED 2 1 2
HIPK3 WILD-TYPE 85 79 98
'HIPK3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.281 (Fisher's exact test), Q value = 0.61

Table S16835.  Gene #1597: 'HIPK3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
HIPK3 MUTATED 3 2 1
HIPK3 WILD-TYPE 86 158 137
'HIPK3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.411 (Fisher's exact test), Q value = 0.74

Table S16836.  Gene #1597: 'HIPK3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
HIPK3 MUTATED 3 1 2
HIPK3 WILD-TYPE 179 132 70
'HIPK3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.671 (Fisher's exact test), Q value = 0.95

Table S16837.  Gene #1597: 'HIPK3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
HIPK3 MUTATED 1 3 1 3
HIPK3 WILD-TYPE 111 93 91 183
'HIPK3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.313 (Fisher's exact test), Q value = 0.64

Table S16838.  Gene #1597: 'HIPK3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
HIPK3 MUTATED 1 1 2 1 1 0 2
HIPK3 WILD-TYPE 59 49 47 39 62 125 97
'HIPK3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.914 (Fisher's exact test), Q value = 1

Table S16839.  Gene #1597: 'HIPK3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
HIPK3 MUTATED 2 2 1 3
HIPK3 WILD-TYPE 128 76 67 193
'HIPK3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.107 (Fisher's exact test), Q value = 0.36

Table S16840.  Gene #1597: 'HIPK3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
HIPK3 MUTATED 0 3 0 1 4 0 0 0 0
HIPK3 WILD-TYPE 40 59 28 79 65 48 43 28 74
'NLRP11 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0177 (Fisher's exact test), Q value = 0.13

Table S16841.  Gene #1598: 'NLRP11 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
NLRP11 MUTATED 5 0 1 2
NLRP11 WILD-TYPE 41 58 63 41

Figure S4273.  Get High-res Image Gene #1598: 'NLRP11 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'NLRP11 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0484 (Fisher's exact test), Q value = 0.23

Table S16842.  Gene #1598: 'NLRP11 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
NLRP11 MUTATED 5 1 2
NLRP11 WILD-TYPE 46 82 75

Figure S4274.  Get High-res Image Gene #1598: 'NLRP11 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'NLRP11 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00887 (Fisher's exact test), Q value = 0.088

Table S16843.  Gene #1598: 'NLRP11 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
NLRP11 MUTATED 15 3 2 0
NLRP11 WILD-TYPE 163 180 99 20

Figure S4275.  Get High-res Image Gene #1598: 'NLRP11 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'NLRP11 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.4 (Fisher's exact test), Q value = 0.72

Table S16844.  Gene #1598: 'NLRP11 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
NLRP11 MUTATED 6 2 4
NLRP11 WILD-TYPE 81 78 96
'NLRP11 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0799 (Fisher's exact test), Q value = 0.3

Table S16845.  Gene #1598: 'NLRP11 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
NLRP11 MUTATED 3 4 11
NLRP11 WILD-TYPE 86 156 127
'NLRP11 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.857 (Fisher's exact test), Q value = 1

Table S16846.  Gene #1598: 'NLRP11 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
NLRP11 MUTATED 10 5 3
NLRP11 WILD-TYPE 172 128 69
'NLRP11 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.385 (Fisher's exact test), Q value = 0.71

Table S16847.  Gene #1598: 'NLRP11 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
NLRP11 MUTATED 2 6 3 9
NLRP11 WILD-TYPE 110 90 89 177
'NLRP11 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.245 (Fisher's exact test), Q value = 0.57

Table S16848.  Gene #1598: 'NLRP11 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
NLRP11 MUTATED 1 2 4 2 2 2 7
NLRP11 WILD-TYPE 59 48 45 38 61 123 92
'NLRP11 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.469 (Fisher's exact test), Q value = 0.8

Table S16849.  Gene #1598: 'NLRP11 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
NLRP11 MUTATED 2 3 3 9
NLRP11 WILD-TYPE 128 75 65 187
'NLRP11 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.603 (Fisher's exact test), Q value = 0.91

Table S16850.  Gene #1598: 'NLRP11 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
NLRP11 MUTATED 1 2 1 2 4 0 3 2 2
NLRP11 WILD-TYPE 39 60 27 78 65 48 40 26 72
'NLRP11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.35 (Fisher's exact test), Q value = 0.68

Table S16851.  Gene #1598: 'NLRP11 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
NLRP11 MUTATED 2 0 2 2
NLRP11 WILD-TYPE 31 31 25 17
'NLRP11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.923 (Fisher's exact test), Q value = 1

Table S16852.  Gene #1598: 'NLRP11 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
NLRP11 MUTATED 3 0 2 1
NLRP11 WILD-TYPE 51 10 22 21
'DZIP1L MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.22 (Fisher's exact test), Q value = 0.53

Table S16853.  Gene #1599: 'DZIP1L MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
DZIP1L MUTATED 2 1 0 2
DZIP1L WILD-TYPE 44 57 64 41
'DZIP1L MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.739 (Fisher's exact test), Q value = 1

Table S16854.  Gene #1599: 'DZIP1L MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
DZIP1L MUTATED 2 2 1
DZIP1L WILD-TYPE 49 81 76
'DZIP1L MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0339 (Fisher's exact test), Q value = 0.19

Table S16855.  Gene #1599: 'DZIP1L MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
DZIP1L MUTATED 11 2 2 1
DZIP1L WILD-TYPE 167 181 99 19

Figure S4276.  Get High-res Image Gene #1599: 'DZIP1L MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'DZIP1L MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S16856.  Gene #1599: 'DZIP1L MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
DZIP1L MUTATED 4 3 4
DZIP1L WILD-TYPE 83 77 96
'DZIP1L MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0694 (Fisher's exact test), Q value = 0.28

Table S16857.  Gene #1599: 'DZIP1L MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
DZIP1L MUTATED 0 7 7
DZIP1L WILD-TYPE 89 153 131
'DZIP1L MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.362 (Fisher's exact test), Q value = 0.69

Table S16858.  Gene #1599: 'DZIP1L MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
DZIP1L MUTATED 6 7 1
DZIP1L WILD-TYPE 176 126 71
'DZIP1L MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.853 (Fisher's exact test), Q value = 1

Table S16859.  Gene #1599: 'DZIP1L MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
DZIP1L MUTATED 5 3 3 5
DZIP1L WILD-TYPE 107 93 89 181
'DZIP1L MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0621 (Fisher's exact test), Q value = 0.27

Table S16860.  Gene #1599: 'DZIP1L MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
DZIP1L MUTATED 3 1 5 0 2 1 4
DZIP1L WILD-TYPE 57 49 44 40 61 124 95
'DZIP1L MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.352 (Fisher's exact test), Q value = 0.68

Table S16861.  Gene #1599: 'DZIP1L MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
DZIP1L MUTATED 6 3 0 7
DZIP1L WILD-TYPE 124 75 68 189
'DZIP1L MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.105 (Fisher's exact test), Q value = 0.36

Table S16862.  Gene #1599: 'DZIP1L MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
DZIP1L MUTATED 0 3 1 2 7 2 0 0 1
DZIP1L WILD-TYPE 40 59 27 78 62 46 43 28 73
'DZIP1L MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00291 (Fisher's exact test), Q value = 0.048

Table S16863.  Gene #1599: 'DZIP1L MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
DZIP1L MUTATED 0 1 0 4
DZIP1L WILD-TYPE 33 30 27 15

Figure S4277.  Get High-res Image Gene #1599: 'DZIP1L MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'DZIP1L MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.892 (Fisher's exact test), Q value = 1

Table S16864.  Gene #1599: 'DZIP1L MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
DZIP1L MUTATED 2 0 2 1
DZIP1L WILD-TYPE 52 10 22 21
'GSG2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0122 (Fisher's exact test), Q value = 0.11

Table S16865.  Gene #1600: 'GSG2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
GSG2 MUTATED 5 0 0 1
GSG2 WILD-TYPE 173 183 101 19

Figure S4278.  Get High-res Image Gene #1600: 'GSG2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'GSG2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0371 (Fisher's exact test), Q value = 0.2

Table S16866.  Gene #1600: 'GSG2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
GSG2 MUTATED 0 0 4
GSG2 WILD-TYPE 87 80 96

Figure S4279.  Get High-res Image Gene #1600: 'GSG2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'GSG2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.733 (Fisher's exact test), Q value = 1

Table S16867.  Gene #1600: 'GSG2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
GSG2 MUTATED 2 2 1
GSG2 WILD-TYPE 87 158 137
'GSG2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S16868.  Gene #1600: 'GSG2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
GSG2 MUTATED 2 2 1
GSG2 WILD-TYPE 180 131 71
'GSG2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.241 (Fisher's exact test), Q value = 0.56

Table S16869.  Gene #1600: 'GSG2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
GSG2 MUTATED 0 3 1 2
GSG2 WILD-TYPE 112 93 91 184
'GSG2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0603 (Fisher's exact test), Q value = 0.27

Table S16870.  Gene #1600: 'GSG2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
GSG2 MUTATED 0 1 3 0 0 2 0
GSG2 WILD-TYPE 60 49 46 40 63 123 99
'GSG2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.509 (Fisher's exact test), Q value = 0.83

Table S16871.  Gene #1600: 'GSG2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
GSG2 MUTATED 3 0 0 3
GSG2 WILD-TYPE 127 78 68 193
'GSG2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.979 (Fisher's exact test), Q value = 1

Table S16872.  Gene #1600: 'GSG2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
GSG2 MUTATED 1 1 0 2 1 0 0 0 1
GSG2 WILD-TYPE 39 61 28 78 68 48 43 28 73
'FAM193A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00035 (Fisher's exact test), Q value = 0.012

Table S16873.  Gene #1601: 'FAM193A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
FAM193A MUTATED 14 0 3 0
FAM193A WILD-TYPE 164 183 98 20

Figure S4280.  Get High-res Image Gene #1601: 'FAM193A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'FAM193A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0205 (Fisher's exact test), Q value = 0.14

Table S16874.  Gene #1601: 'FAM193A MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
FAM193A MUTATED 4 1 11
FAM193A WILD-TYPE 83 79 89

Figure S4281.  Get High-res Image Gene #1601: 'FAM193A MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'FAM193A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0253 (Fisher's exact test), Q value = 0.16

Table S16875.  Gene #1601: 'FAM193A MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
FAM193A MUTATED 0 3 8
FAM193A WILD-TYPE 89 157 130

Figure S4282.  Get High-res Image Gene #1601: 'FAM193A MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'FAM193A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.56 (Fisher's exact test), Q value = 0.87

Table S16876.  Gene #1601: 'FAM193A MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
FAM193A MUTATED 7 3 1
FAM193A WILD-TYPE 175 130 71
'FAM193A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00014 (Fisher's exact test), Q value = 0.0066

Table S16877.  Gene #1601: 'FAM193A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
FAM193A MUTATED 1 8 7 1
FAM193A WILD-TYPE 111 88 85 185

Figure S4283.  Get High-res Image Gene #1601: 'FAM193A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'FAM193A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S16878.  Gene #1601: 'FAM193A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
FAM193A MUTATED 0 3 12 0 1 0 1
FAM193A WILD-TYPE 60 47 37 40 62 125 98

Figure S4284.  Get High-res Image Gene #1601: 'FAM193A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'FAM193A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0294 (Fisher's exact test), Q value = 0.18

Table S16879.  Gene #1601: 'FAM193A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
FAM193A MUTATED 9 4 0 4
FAM193A WILD-TYPE 121 74 68 192

Figure S4285.  Get High-res Image Gene #1601: 'FAM193A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'FAM193A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00466 (Fisher's exact test), Q value = 0.062

Table S16880.  Gene #1601: 'FAM193A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
FAM193A MUTATED 1 6 3 2 5 0 0 0 0
FAM193A WILD-TYPE 39 56 25 78 64 48 43 28 74

Figure S4286.  Get High-res Image Gene #1601: 'FAM193A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'FAM193A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0239 (Fisher's exact test), Q value = 0.16

Table S16881.  Gene #1601: 'FAM193A MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
FAM193A MUTATED 1 0 0 3
FAM193A WILD-TYPE 32 31 27 16

Figure S4287.  Get High-res Image Gene #1601: 'FAM193A MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'FAM193A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.869 (Fisher's exact test), Q value = 1

Table S16882.  Gene #1601: 'FAM193A MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
FAM193A MUTATED 3 0 1 0
FAM193A WILD-TYPE 51 10 23 22
'ENC1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.787 (Fisher's exact test), Q value = 1

Table S16883.  Gene #1602: 'ENC1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ENC1 MUTATED 1 0 1 1
ENC1 WILD-TYPE 45 58 63 42
'ENC1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S16884.  Gene #1602: 'ENC1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ENC1 MUTATED 1 1 1
ENC1 WILD-TYPE 50 82 76
'ENC1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.739 (Fisher's exact test), Q value = 1

Table S16885.  Gene #1602: 'ENC1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ENC1 MUTATED 7 4 2 0
ENC1 WILD-TYPE 171 179 99 20
'ENC1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.612 (Fisher's exact test), Q value = 0.91

Table S16886.  Gene #1602: 'ENC1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ENC1 MUTATED 2 3 5
ENC1 WILD-TYPE 85 77 95
'ENC1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.111 (Fisher's exact test), Q value = 0.37

Table S16887.  Gene #1602: 'ENC1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ENC1 MUTATED 0 5 6
ENC1 WILD-TYPE 89 155 132
'ENC1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.428 (Fisher's exact test), Q value = 0.76

Table S16888.  Gene #1602: 'ENC1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ENC1 MUTATED 4 6 1
ENC1 WILD-TYPE 178 127 71
'ENC1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.239 (Fisher's exact test), Q value = 0.56

Table S16889.  Gene #1602: 'ENC1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ENC1 MUTATED 4 5 1 3
ENC1 WILD-TYPE 108 91 91 183
'ENC1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0509 (Fisher's exact test), Q value = 0.24

Table S16890.  Gene #1602: 'ENC1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ENC1 MUTATED 3 2 3 0 1 0 4
ENC1 WILD-TYPE 57 48 46 40 62 125 95
'ENC1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.144 (Fisher's exact test), Q value = 0.42

Table S16891.  Gene #1602: 'ENC1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ENC1 MUTATED 7 1 0 5
ENC1 WILD-TYPE 123 77 68 191
'ENC1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.342 (Fisher's exact test), Q value = 0.67

Table S16892.  Gene #1602: 'ENC1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ENC1 MUTATED 1 1 3 1 2 0 1 1 3
ENC1 WILD-TYPE 39 61 25 79 67 48 42 27 71
'ENC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.871 (Fisher's exact test), Q value = 1

Table S16893.  Gene #1602: 'ENC1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
ENC1 MUTATED 1 1 0 1
ENC1 WILD-TYPE 32 30 27 18
'ENC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0612 (Fisher's exact test), Q value = 0.27

Table S16894.  Gene #1602: 'ENC1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
ENC1 MUTATED 0 1 2 0
ENC1 WILD-TYPE 54 9 22 22
'RUSC2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.133 (Fisher's exact test), Q value = 0.41

Table S16895.  Gene #1603: 'RUSC2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
RUSC2 MUTATED 1 0 1 3
RUSC2 WILD-TYPE 45 58 63 40
'RUSC2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.252 (Fisher's exact test), Q value = 0.58

Table S16896.  Gene #1603: 'RUSC2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
RUSC2 MUTATED 3 1 1
RUSC2 WILD-TYPE 48 82 76
'RUSC2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00817 (Fisher's exact test), Q value = 0.084

Table S16897.  Gene #1603: 'RUSC2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
RUSC2 MUTATED 11 1 1 0
RUSC2 WILD-TYPE 167 182 100 20

Figure S4288.  Get High-res Image Gene #1603: 'RUSC2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'RUSC2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.396 (Fisher's exact test), Q value = 0.72

Table S16898.  Gene #1603: 'RUSC2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
RUSC2 MUTATED 2 1 5
RUSC2 WILD-TYPE 85 79 95
'RUSC2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.454 (Fisher's exact test), Q value = 0.78

Table S16899.  Gene #1603: 'RUSC2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
RUSC2 MUTATED 4 3 5
RUSC2 WILD-TYPE 85 157 133
'RUSC2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.801 (Fisher's exact test), Q value = 1

Table S16900.  Gene #1603: 'RUSC2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
RUSC2 MUTATED 7 3 2
RUSC2 WILD-TYPE 175 130 70
'RUSC2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.435 (Fisher's exact test), Q value = 0.76

Table S16901.  Gene #1603: 'RUSC2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
RUSC2 MUTATED 1 3 4 5
RUSC2 WILD-TYPE 111 93 88 181
'RUSC2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00274 (Fisher's exact test), Q value = 0.046

Table S16902.  Gene #1603: 'RUSC2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
RUSC2 MUTATED 0 0 5 2 0 1 5
RUSC2 WILD-TYPE 60 50 44 38 63 124 94

Figure S4289.  Get High-res Image Gene #1603: 'RUSC2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'RUSC2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.342 (Fisher's exact test), Q value = 0.67

Table S16903.  Gene #1603: 'RUSC2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
RUSC2 MUTATED 4 1 0 8
RUSC2 WILD-TYPE 126 77 68 188
'RUSC2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0136 (Fisher's exact test), Q value = 0.12

Table S16904.  Gene #1603: 'RUSC2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
RUSC2 MUTATED 1 2 1 0 7 1 1 0 0
RUSC2 WILD-TYPE 39 60 27 80 62 47 42 28 74

Figure S4290.  Get High-res Image Gene #1603: 'RUSC2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'RUSC2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.136 (Fisher's exact test), Q value = 0.41

Table S16905.  Gene #1603: 'RUSC2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
RUSC2 MUTATED 1 0 0 2
RUSC2 WILD-TYPE 32 31 27 17
'RUSC2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S16906.  Gene #1603: 'RUSC2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
RUSC2 MUTATED 2 0 1 0
RUSC2 WILD-TYPE 52 10 23 22
'WHAMM MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.065 (Fisher's exact test), Q value = 0.28

Table S16907.  Gene #1604: 'WHAMM MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
WHAMM MUTATED 1 0 0 2
WHAMM WILD-TYPE 45 58 64 41
'WHAMM MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.462 (Fisher's exact test), Q value = 0.79

Table S16908.  Gene #1604: 'WHAMM MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
WHAMM MUTATED 1 2 0
WHAMM WILD-TYPE 50 81 77
'WHAMM MUTATION STATUS' versus 'CN_CNMF'

P value = 0.443 (Fisher's exact test), Q value = 0.77

Table S16909.  Gene #1604: 'WHAMM MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
WHAMM MUTATED 4 2 0 0
WHAMM WILD-TYPE 174 181 101 20
'WHAMM MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S16910.  Gene #1604: 'WHAMM MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
WHAMM MUTATED 1 1 2
WHAMM WILD-TYPE 86 79 98
'WHAMM MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.458 (Fisher's exact test), Q value = 0.79

Table S16911.  Gene #1604: 'WHAMM MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
WHAMM MUTATED 2 1 2
WHAMM WILD-TYPE 87 159 136
'WHAMM MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.273 (Fisher's exact test), Q value = 0.6

Table S16912.  Gene #1604: 'WHAMM MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
WHAMM MUTATED 1 2 2
WHAMM WILD-TYPE 181 131 70
'WHAMM MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.217 (Fisher's exact test), Q value = 0.53

Table S16913.  Gene #1604: 'WHAMM MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
WHAMM MUTATED 0 1 3 2
WHAMM WILD-TYPE 112 95 89 184
'WHAMM MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.867 (Fisher's exact test), Q value = 1

Table S16914.  Gene #1604: 'WHAMM MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
WHAMM MUTATED 0 1 1 0 1 1 2
WHAMM WILD-TYPE 60 49 48 40 62 124 97
'WHAMM MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.219 (Fisher's exact test), Q value = 0.53

Table S16915.  Gene #1604: 'WHAMM MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
WHAMM MUTATED 0 2 0 4
WHAMM WILD-TYPE 130 76 68 192
'WHAMM MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.382 (Fisher's exact test), Q value = 0.71

Table S16916.  Gene #1604: 'WHAMM MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
WHAMM MUTATED 0 2 1 0 1 0 0 1 1
WHAMM WILD-TYPE 40 60 27 80 68 48 43 27 73
'TAF1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0149 (Fisher's exact test), Q value = 0.12

Table S16917.  Gene #1605: 'TAF1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
TAF1 MUTATED 1 2 0 5
TAF1 WILD-TYPE 45 56 64 38

Figure S4291.  Get High-res Image Gene #1605: 'TAF1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'TAF1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.599 (Fisher's exact test), Q value = 0.9

Table S16918.  Gene #1605: 'TAF1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
TAF1 MUTATED 3 3 2
TAF1 WILD-TYPE 48 80 75
'TAF1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.215 (Fisher's exact test), Q value = 0.53

Table S16919.  Gene #1605: 'TAF1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
TAF1 MUTATED 14 6 6 0
TAF1 WILD-TYPE 164 177 95 20
'TAF1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.191 (Fisher's exact test), Q value = 0.49

Table S16920.  Gene #1605: 'TAF1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
TAF1 MUTATED 7 7 3
TAF1 WILD-TYPE 80 73 97
'TAF1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.473 (Fisher's exact test), Q value = 0.8

Table S16921.  Gene #1605: 'TAF1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
TAF1 MUTATED 4 8 11
TAF1 WILD-TYPE 85 152 127
'TAF1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.583 (Fisher's exact test), Q value = 0.89

Table S16922.  Gene #1605: 'TAF1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
TAF1 MUTATED 10 7 6
TAF1 WILD-TYPE 172 126 66
'TAF1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.486 (Fisher's exact test), Q value = 0.81

Table S16923.  Gene #1605: 'TAF1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
TAF1 MUTATED 5 5 8 8
TAF1 WILD-TYPE 107 91 84 178
'TAF1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0439 (Fisher's exact test), Q value = 0.22

Table S16924.  Gene #1605: 'TAF1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
TAF1 MUTATED 4 1 6 1 6 2 6
TAF1 WILD-TYPE 56 49 43 39 57 123 93

Figure S4292.  Get High-res Image Gene #1605: 'TAF1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'TAF1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.623 (Fisher's exact test), Q value = 0.92

Table S16925.  Gene #1605: 'TAF1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
TAF1 MUTATED 7 6 4 8
TAF1 WILD-TYPE 123 72 64 188
'TAF1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.07 (Fisher's exact test), Q value = 0.29

Table S16926.  Gene #1605: 'TAF1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
TAF1 MUTATED 3 6 3 2 7 1 2 0 1
TAF1 WILD-TYPE 37 56 25 78 62 47 41 28 73
'TAF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.483 (Fisher's exact test), Q value = 0.81

Table S16927.  Gene #1605: 'TAF1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
TAF1 MUTATED 2 2 1 3
TAF1 WILD-TYPE 31 29 26 16
'TAF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.126 (Fisher's exact test), Q value = 0.4

Table S16928.  Gene #1605: 'TAF1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
TAF1 MUTATED 2 2 3 1
TAF1 WILD-TYPE 52 8 21 21
'METTL5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.444 (Fisher's exact test), Q value = 0.77

Table S16929.  Gene #1606: 'METTL5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
METTL5 MUTATED 4 2 0 0
METTL5 WILD-TYPE 174 181 101 20
'METTL5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.323 (Fisher's exact test), Q value = 0.65

Table S16930.  Gene #1606: 'METTL5 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
METTL5 MUTATED 0 1 3
METTL5 WILD-TYPE 87 79 97
'METTL5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.509 (Fisher's exact test), Q value = 0.83

Table S16931.  Gene #1606: 'METTL5 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
METTL5 MUTATED 0 3 3
METTL5 WILD-TYPE 89 157 135
'METTL5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.207 (Fisher's exact test), Q value = 0.51

Table S16932.  Gene #1606: 'METTL5 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
METTL5 MUTATED 1 4 1
METTL5 WILD-TYPE 181 129 71
'METTL5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.89 (Fisher's exact test), Q value = 1

Table S16933.  Gene #1606: 'METTL5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
METTL5 MUTATED 1 2 1 2
METTL5 WILD-TYPE 111 94 91 184
'METTL5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0763 (Fisher's exact test), Q value = 0.3

Table S16934.  Gene #1606: 'METTL5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
METTL5 MUTATED 1 2 2 0 0 0 1
METTL5 WILD-TYPE 59 48 47 40 63 125 98
'METTL5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.26 (Fisher's exact test), Q value = 0.58

Table S16935.  Gene #1606: 'METTL5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
METTL5 MUTATED 4 0 0 2
METTL5 WILD-TYPE 126 78 68 194
'METTL5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0222 (Fisher's exact test), Q value = 0.15

Table S16936.  Gene #1606: 'METTL5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
METTL5 MUTATED 1 0 1 0 4 0 0 0 0
METTL5 WILD-TYPE 39 62 27 80 65 48 43 28 74

Figure S4293.  Get High-res Image Gene #1606: 'METTL5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'ITPRIPL1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.206 (Fisher's exact test), Q value = 0.51

Table S16937.  Gene #1607: 'ITPRIPL1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ITPRIPL1 MUTATED 6 1 1 0
ITPRIPL1 WILD-TYPE 172 182 100 20
'ITPRIPL1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.028 (Fisher's exact test), Q value = 0.17

Table S16938.  Gene #1607: 'ITPRIPL1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ITPRIPL1 MUTATED 5 0 1
ITPRIPL1 WILD-TYPE 82 80 99

Figure S4294.  Get High-res Image Gene #1607: 'ITPRIPL1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'ITPRIPL1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.264 (Fisher's exact test), Q value = 0.59

Table S16939.  Gene #1607: 'ITPRIPL1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ITPRIPL1 MUTATED 2 1 4
ITPRIPL1 WILD-TYPE 87 159 134
'ITPRIPL1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.363 (Fisher's exact test), Q value = 0.69

Table S16940.  Gene #1607: 'ITPRIPL1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ITPRIPL1 MUTATED 5 2 0
ITPRIPL1 WILD-TYPE 177 131 72
'ITPRIPL1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0663 (Fisher's exact test), Q value = 0.28

Table S16941.  Gene #1607: 'ITPRIPL1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ITPRIPL1 MUTATED 0 2 4 2
ITPRIPL1 WILD-TYPE 112 94 88 184
'ITPRIPL1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.03 (Fisher's exact test), Q value = 0.18

Table S16942.  Gene #1607: 'ITPRIPL1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ITPRIPL1 MUTATED 1 2 3 1 0 0 1
ITPRIPL1 WILD-TYPE 59 48 46 39 63 125 98

Figure S4295.  Get High-res Image Gene #1607: 'ITPRIPL1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ITPRIPL1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.437 (Fisher's exact test), Q value = 0.76

Table S16943.  Gene #1607: 'ITPRIPL1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ITPRIPL1 MUTATED 1 2 0 5
ITPRIPL1 WILD-TYPE 129 76 68 191
'ITPRIPL1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.296 (Fisher's exact test), Q value = 0.63

Table S16944.  Gene #1607: 'ITPRIPL1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ITPRIPL1 MUTATED 0 3 1 0 1 0 1 1 1
ITPRIPL1 WILD-TYPE 40 59 27 80 68 48 42 27 73
'WFS1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0508 (Fisher's exact test), Q value = 0.24

Table S16945.  Gene #1608: 'WFS1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
WFS1 MUTATED 9 3 0 0
WFS1 WILD-TYPE 169 180 101 20
'WFS1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.506 (Fisher's exact test), Q value = 0.83

Table S16946.  Gene #1608: 'WFS1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
WFS1 MUTATED 3 2 6
WFS1 WILD-TYPE 84 78 94
'WFS1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.351 (Fisher's exact test), Q value = 0.68

Table S16947.  Gene #1608: 'WFS1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
WFS1 MUTATED 3 2 5
WFS1 WILD-TYPE 86 158 133
'WFS1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.438 (Fisher's exact test), Q value = 0.77

Table S16948.  Gene #1608: 'WFS1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
WFS1 MUTATED 7 2 1
WFS1 WILD-TYPE 175 131 71
'WFS1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00602 (Fisher's exact test), Q value = 0.071

Table S16949.  Gene #1608: 'WFS1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
WFS1 MUTATED 2 2 7 1
WFS1 WILD-TYPE 110 94 85 185

Figure S4296.  Get High-res Image Gene #1608: 'WFS1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'WFS1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00055 (Fisher's exact test), Q value = 0.016

Table S16950.  Gene #1608: 'WFS1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
WFS1 MUTATED 0 1 6 1 3 1 0
WFS1 WILD-TYPE 60 49 43 39 60 124 99

Figure S4297.  Get High-res Image Gene #1608: 'WFS1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'WFS1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00021 (Fisher's exact test), Q value = 0.0086

Table S16951.  Gene #1608: 'WFS1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
WFS1 MUTATED 5 6 0 0
WFS1 WILD-TYPE 125 72 68 196

Figure S4298.  Get High-res Image Gene #1608: 'WFS1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'WFS1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0155 (Fisher's exact test), Q value = 0.12

Table S16952.  Gene #1608: 'WFS1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
WFS1 MUTATED 2 6 0 2 1 0 0 0 0
WFS1 WILD-TYPE 38 56 28 78 68 48 43 28 74

Figure S4299.  Get High-res Image Gene #1608: 'WFS1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'WFS1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0932 (Fisher's exact test), Q value = 0.33

Table S16953.  Gene #1608: 'WFS1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
WFS1 MUTATED 2 0 1 3
WFS1 WILD-TYPE 31 31 26 16
'WFS1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.684 (Fisher's exact test), Q value = 0.96

Table S16954.  Gene #1608: 'WFS1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
WFS1 MUTATED 4 0 2 0
WFS1 WILD-TYPE 50 10 22 22
'GOT1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0263 (Fisher's exact test), Q value = 0.16

Table S16955.  Gene #1609: 'GOT1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
GOT1 MUTATED 3 0 0 2
GOT1 WILD-TYPE 43 58 64 41

Figure S4300.  Get High-res Image Gene #1609: 'GOT1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'GOT1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.74 (Fisher's exact test), Q value = 1

Table S16956.  Gene #1609: 'GOT1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
GOT1 MUTATED 2 2 1
GOT1 WILD-TYPE 49 81 76
'GOT1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.102 (Fisher's exact test), Q value = 0.35

Table S16957.  Gene #1609: 'GOT1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
GOT1 MUTATED 4 1 0 1
GOT1 WILD-TYPE 174 182 101 19
'GOT1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.17 (Fisher's exact test), Q value = 0.47

Table S16958.  Gene #1609: 'GOT1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
GOT1 MUTATED 1 4 0
GOT1 WILD-TYPE 88 156 138
'GOT1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.342 (Fisher's exact test), Q value = 0.67

Table S16959.  Gene #1609: 'GOT1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
GOT1 MUTATED 1 3 1
GOT1 WILD-TYPE 181 130 71
'GOT1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.195 (Fisher's exact test), Q value = 0.5

Table S16960.  Gene #1609: 'GOT1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
GOT1 MUTATED 1 0 0 5
GOT1 WILD-TYPE 111 96 92 181
'GOT1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.749 (Fisher's exact test), Q value = 1

Table S16961.  Gene #1609: 'GOT1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
GOT1 MUTATED 1 0 0 0 1 1 3
GOT1 WILD-TYPE 59 50 49 40 62 124 96
'GOT1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.334 (Fisher's exact test), Q value = 0.66

Table S16962.  Gene #1609: 'GOT1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
GOT1 MUTATED 1 0 0 5
GOT1 WILD-TYPE 129 78 68 191
'GOT1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0472 (Fisher's exact test), Q value = 0.23

Table S16963.  Gene #1609: 'GOT1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
GOT1 MUTATED 0 0 2 1 3 0 0 0 0
GOT1 WILD-TYPE 40 62 26 79 66 48 43 28 74

Figure S4301.  Get High-res Image Gene #1609: 'GOT1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'SRGAP3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.106 (Fisher's exact test), Q value = 0.36

Table S16964.  Gene #1610: 'SRGAP3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
SRGAP3 MUTATED 3 1 0 2
SRGAP3 WILD-TYPE 43 57 64 41
'SRGAP3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0572 (Fisher's exact test), Q value = 0.26

Table S16965.  Gene #1610: 'SRGAP3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
SRGAP3 MUTATED 3 0 3
SRGAP3 WILD-TYPE 48 83 74
'SRGAP3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.146 (Fisher's exact test), Q value = 0.43

Table S16966.  Gene #1610: 'SRGAP3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
SRGAP3 MUTATED 11 4 2 1
SRGAP3 WILD-TYPE 167 179 99 19
'SRGAP3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.164 (Fisher's exact test), Q value = 0.46

Table S16967.  Gene #1610: 'SRGAP3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
SRGAP3 MUTATED 5 1 7
SRGAP3 WILD-TYPE 82 79 93
'SRGAP3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.394 (Fisher's exact test), Q value = 0.72

Table S16968.  Gene #1610: 'SRGAP3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
SRGAP3 MUTATED 2 5 8
SRGAP3 WILD-TYPE 87 155 130
'SRGAP3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.507 (Fisher's exact test), Q value = 0.83

Table S16969.  Gene #1610: 'SRGAP3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
SRGAP3 MUTATED 9 5 1
SRGAP3 WILD-TYPE 173 128 71
'SRGAP3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0998 (Fisher's exact test), Q value = 0.35

Table S16970.  Gene #1610: 'SRGAP3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
SRGAP3 MUTATED 2 3 8 6
SRGAP3 WILD-TYPE 110 93 84 180
'SRGAP3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.001 (Fisher's exact test), Q value = 0.024

Table S16971.  Gene #1610: 'SRGAP3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
SRGAP3 MUTATED 2 2 7 0 3 0 5
SRGAP3 WILD-TYPE 58 48 42 40 60 125 94

Figure S4302.  Get High-res Image Gene #1610: 'SRGAP3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'SRGAP3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0967 (Fisher's exact test), Q value = 0.34

Table S16972.  Gene #1610: 'SRGAP3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
SRGAP3 MUTATED 4 6 0 9
SRGAP3 WILD-TYPE 126 72 68 187
'SRGAP3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00011 (Fisher's exact test), Q value = 0.0056

Table S16973.  Gene #1610: 'SRGAP3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
SRGAP3 MUTATED 1 8 0 2 8 0 0 0 0
SRGAP3 WILD-TYPE 39 54 28 78 61 48 43 28 74

Figure S4303.  Get High-res Image Gene #1610: 'SRGAP3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'SRGAP3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0955 (Fisher's exact test), Q value = 0.34

Table S16974.  Gene #1610: 'SRGAP3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
SRGAP3 MUTATED 2 0 0 2
SRGAP3 WILD-TYPE 31 31 27 17
'SRGAP3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.87 (Fisher's exact test), Q value = 1

Table S16975.  Gene #1610: 'SRGAP3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
SRGAP3 MUTATED 3 0 1 0
SRGAP3 WILD-TYPE 51 10 23 22
'MTMR8 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0321 (Fisher's exact test), Q value = 0.18

Table S16976.  Gene #1611: 'MTMR8 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
MTMR8 MUTATED 3 0 0 1
MTMR8 WILD-TYPE 43 58 64 42

Figure S4304.  Get High-res Image Gene #1611: 'MTMR8 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'MTMR8 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0401 (Fisher's exact test), Q value = 0.21

Table S16977.  Gene #1611: 'MTMR8 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
MTMR8 MUTATED 3 0 1
MTMR8 WILD-TYPE 48 83 76

Figure S4305.  Get High-res Image Gene #1611: 'MTMR8 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'MTMR8 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.709 (Fisher's exact test), Q value = 0.98

Table S16978.  Gene #1611: 'MTMR8 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
MTMR8 MUTATED 7 4 4 0
MTMR8 WILD-TYPE 171 179 97 20
'MTMR8 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.341 (Fisher's exact test), Q value = 0.67

Table S16979.  Gene #1611: 'MTMR8 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
MTMR8 MUTATED 6 2 3
MTMR8 WILD-TYPE 81 78 97
'MTMR8 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.245 (Fisher's exact test), Q value = 0.57

Table S16980.  Gene #1611: 'MTMR8 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
MTMR8 MUTATED 1 4 7
MTMR8 WILD-TYPE 88 156 131
'MTMR8 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.583 (Fisher's exact test), Q value = 0.89

Table S16981.  Gene #1611: 'MTMR8 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
MTMR8 MUTATED 4 5 3
MTMR8 WILD-TYPE 178 128 69
'MTMR8 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.46 (Fisher's exact test), Q value = 0.79

Table S16982.  Gene #1611: 'MTMR8 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
MTMR8 MUTATED 6 3 2 4
MTMR8 WILD-TYPE 106 93 90 182
'MTMR8 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0279 (Fisher's exact test), Q value = 0.17

Table S16983.  Gene #1611: 'MTMR8 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
MTMR8 MUTATED 2 1 2 4 3 0 3
MTMR8 WILD-TYPE 58 49 47 36 60 125 96

Figure S4306.  Get High-res Image Gene #1611: 'MTMR8 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'MTMR8 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.349 (Fisher's exact test), Q value = 0.68

Table S16984.  Gene #1611: 'MTMR8 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
MTMR8 MUTATED 6 4 1 4
MTMR8 WILD-TYPE 124 74 67 192
'MTMR8 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00047 (Fisher's exact test), Q value = 0.015

Table S16985.  Gene #1611: 'MTMR8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
MTMR8 MUTATED 6 3 0 0 4 0 2 0 0
MTMR8 WILD-TYPE 34 59 28 80 65 48 41 28 74

Figure S4307.  Get High-res Image Gene #1611: 'MTMR8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'MTMR8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.553 (Fisher's exact test), Q value = 0.87

Table S16986.  Gene #1611: 'MTMR8 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
MTMR8 MUTATED 1 2 0 0
MTMR8 WILD-TYPE 32 29 27 19
'MTMR8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.563 (Fisher's exact test), Q value = 0.87

Table S16987.  Gene #1611: 'MTMR8 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
MTMR8 MUTATED 3 0 0 0
MTMR8 WILD-TYPE 51 10 24 22
'GAB3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.431 (Fisher's exact test), Q value = 0.76

Table S16988.  Gene #1612: 'GAB3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
GAB3 MUTATED 3 1 1 2
GAB3 WILD-TYPE 43 57 63 41
'GAB3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.545 (Fisher's exact test), Q value = 0.86

Table S16989.  Gene #1612: 'GAB3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
GAB3 MUTATED 3 2 2
GAB3 WILD-TYPE 48 81 75
'GAB3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0153 (Fisher's exact test), Q value = 0.12

Table S16990.  Gene #1612: 'GAB3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
GAB3 MUTATED 10 2 0 0
GAB3 WILD-TYPE 168 181 101 20

Figure S4308.  Get High-res Image Gene #1612: 'GAB3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'GAB3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.328 (Fisher's exact test), Q value = 0.66

Table S16991.  Gene #1612: 'GAB3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
GAB3 MUTATED 3 0 2
GAB3 WILD-TYPE 84 80 98
'GAB3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.912 (Fisher's exact test), Q value = 1

Table S16992.  Gene #1612: 'GAB3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
GAB3 MUTATED 2 3 4
GAB3 WILD-TYPE 87 157 134
'GAB3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.363 (Fisher's exact test), Q value = 0.69

Table S16993.  Gene #1612: 'GAB3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
GAB3 MUTATED 6 3 0
GAB3 WILD-TYPE 176 130 72
'GAB3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.601 (Fisher's exact test), Q value = 0.9

Table S16994.  Gene #1612: 'GAB3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
GAB3 MUTATED 2 1 2 7
GAB3 WILD-TYPE 110 95 90 179
'GAB3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.503 (Fisher's exact test), Q value = 0.83

Table S16995.  Gene #1612: 'GAB3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
GAB3 MUTATED 0 1 2 0 1 3 5
GAB3 WILD-TYPE 60 49 47 40 62 122 94
'GAB3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.417 (Fisher's exact test), Q value = 0.74

Table S16996.  Gene #1612: 'GAB3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
GAB3 MUTATED 2 3 0 5
GAB3 WILD-TYPE 128 75 68 191
'GAB3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.525 (Fisher's exact test), Q value = 0.85

Table S16997.  Gene #1612: 'GAB3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
GAB3 MUTATED 0 2 1 4 1 0 0 1 1
GAB3 WILD-TYPE 40 60 27 76 68 48 43 27 73
'GAB3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.627 (Fisher's exact test), Q value = 0.92

Table S16998.  Gene #1612: 'GAB3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
GAB3 MUTATED 0 1 1 1
GAB3 WILD-TYPE 33 30 26 18
'GAB3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S16999.  Gene #1612: 'GAB3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
GAB3 MUTATED 2 0 1 0
GAB3 WILD-TYPE 52 10 23 22
'GIMAP5 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00091 (Fisher's exact test), Q value = 0.023

Table S17000.  Gene #1613: 'GIMAP5 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
GIMAP5 MUTATED 1 0 0 5
GIMAP5 WILD-TYPE 45 58 64 38

Figure S4309.  Get High-res Image Gene #1613: 'GIMAP5 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'GIMAP5 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0587 (Fisher's exact test), Q value = 0.26

Table S17001.  Gene #1613: 'GIMAP5 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
GIMAP5 MUTATED 3 0 3
GIMAP5 WILD-TYPE 48 83 74
'GIMAP5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.232 (Fisher's exact test), Q value = 0.55

Table S17002.  Gene #1613: 'GIMAP5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
GIMAP5 MUTATED 4 3 0 1
GIMAP5 WILD-TYPE 174 180 101 19
'GIMAP5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.818 (Fisher's exact test), Q value = 1

Table S17003.  Gene #1613: 'GIMAP5 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
GIMAP5 MUTATED 2 4 2
GIMAP5 WILD-TYPE 87 156 136
'GIMAP5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.808 (Fisher's exact test), Q value = 1

Table S17004.  Gene #1613: 'GIMAP5 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
GIMAP5 MUTATED 4 2 2
GIMAP5 WILD-TYPE 178 131 70
'GIMAP5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.24 (Fisher's exact test), Q value = 0.56

Table S17005.  Gene #1613: 'GIMAP5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
GIMAP5 MUTATED 1 1 0 6
GIMAP5 WILD-TYPE 111 95 92 180
'GIMAP5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.95 (Fisher's exact test), Q value = 1

Table S17006.  Gene #1613: 'GIMAP5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
GIMAP5 MUTATED 1 0 1 0 1 2 3
GIMAP5 WILD-TYPE 59 50 48 40 62 123 96
'GIMAP5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.458 (Fisher's exact test), Q value = 0.78

Table S17007.  Gene #1613: 'GIMAP5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
GIMAP5 MUTATED 1 0 1 5
GIMAP5 WILD-TYPE 129 78 67 191
'GIMAP5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.072 (Fisher's exact test), Q value = 0.29

Table S17008.  Gene #1613: 'GIMAP5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
GIMAP5 MUTATED 0 0 1 0 4 0 0 0 2
GIMAP5 WILD-TYPE 40 62 27 80 65 48 43 28 72
'ZEB1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.136 (Fisher's exact test), Q value = 0.41

Table S17009.  Gene #1614: 'ZEB1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ZEB1 MUTATED 3 0 2 3
ZEB1 WILD-TYPE 43 58 62 40
'ZEB1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00238 (Fisher's exact test), Q value = 0.042

Table S17010.  Gene #1614: 'ZEB1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ZEB1 MUTATED 6 2 0
ZEB1 WILD-TYPE 45 81 77

Figure S4310.  Get High-res Image Gene #1614: 'ZEB1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'ZEB1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0449 (Fisher's exact test), Q value = 0.23

Table S17011.  Gene #1614: 'ZEB1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ZEB1 MUTATED 15 4 4 0
ZEB1 WILD-TYPE 163 179 97 20

Figure S4311.  Get High-res Image Gene #1614: 'ZEB1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ZEB1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.429 (Fisher's exact test), Q value = 0.76

Table S17012.  Gene #1614: 'ZEB1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ZEB1 MUTATED 6 2 5
ZEB1 WILD-TYPE 81 78 95
'ZEB1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.875 (Fisher's exact test), Q value = 1

Table S17013.  Gene #1614: 'ZEB1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ZEB1 MUTATED 5 9 6
ZEB1 WILD-TYPE 84 151 132
'ZEB1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.442 (Fisher's exact test), Q value = 0.77

Table S17014.  Gene #1614: 'ZEB1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ZEB1 MUTATED 7 8 5
ZEB1 WILD-TYPE 175 125 67
'ZEB1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.112 (Fisher's exact test), Q value = 0.37

Table S17015.  Gene #1614: 'ZEB1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ZEB1 MUTATED 1 6 5 11
ZEB1 WILD-TYPE 111 90 87 175
'ZEB1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0181 (Fisher's exact test), Q value = 0.13

Table S17016.  Gene #1614: 'ZEB1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ZEB1 MUTATED 0 3 4 1 3 2 10
ZEB1 WILD-TYPE 60 47 45 39 60 123 89

Figure S4312.  Get High-res Image Gene #1614: 'ZEB1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ZEB1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.583 (Fisher's exact test), Q value = 0.89

Table S17017.  Gene #1614: 'ZEB1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ZEB1 MUTATED 4 5 2 11
ZEB1 WILD-TYPE 126 73 66 185
'ZEB1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.12 (Fisher's exact test), Q value = 0.39

Table S17018.  Gene #1614: 'ZEB1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ZEB1 MUTATED 3 6 1 2 6 0 0 1 3
ZEB1 WILD-TYPE 37 56 27 78 63 48 43 27 71
'ZEB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.228 (Fisher's exact test), Q value = 0.55

Table S17019.  Gene #1614: 'ZEB1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
ZEB1 MUTATED 1 0 2 2
ZEB1 WILD-TYPE 32 31 25 17
'ZEB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.379 (Fisher's exact test), Q value = 0.71

Table S17020.  Gene #1614: 'ZEB1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
ZEB1 MUTATED 2 1 2 0
ZEB1 WILD-TYPE 52 9 22 22
'CATSPER4 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.818 (Fisher's exact test), Q value = 1

Table S17021.  Gene #1615: 'CATSPER4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
CATSPER4 MUTATED 1 1 1 2
CATSPER4 WILD-TYPE 45 57 63 41
'CATSPER4 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.638 (Fisher's exact test), Q value = 0.93

Table S17022.  Gene #1615: 'CATSPER4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
CATSPER4 MUTATED 2 1 2
CATSPER4 WILD-TYPE 49 82 75
'CATSPER4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0109 (Fisher's exact test), Q value = 0.1

Table S17023.  Gene #1615: 'CATSPER4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
CATSPER4 MUTATED 10 2 0 1
CATSPER4 WILD-TYPE 168 181 101 19

Figure S4313.  Get High-res Image Gene #1615: 'CATSPER4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'CATSPER4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.115 (Fisher's exact test), Q value = 0.38

Table S17024.  Gene #1615: 'CATSPER4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
CATSPER4 MUTATED 3 0 5
CATSPER4 WILD-TYPE 84 80 95
'CATSPER4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.189 (Fisher's exact test), Q value = 0.49

Table S17025.  Gene #1615: 'CATSPER4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
CATSPER4 MUTATED 0 6 4
CATSPER4 WILD-TYPE 89 154 134
'CATSPER4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.301 (Fisher's exact test), Q value = 0.63

Table S17026.  Gene #1615: 'CATSPER4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
CATSPER4 MUTATED 3 6 1
CATSPER4 WILD-TYPE 179 127 71
'CATSPER4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0259 (Fisher's exact test), Q value = 0.16

Table S17027.  Gene #1615: 'CATSPER4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
CATSPER4 MUTATED 0 3 6 4
CATSPER4 WILD-TYPE 112 93 86 182

Figure S4314.  Get High-res Image Gene #1615: 'CATSPER4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'CATSPER4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.29 (Fisher's exact test), Q value = 0.62

Table S17028.  Gene #1615: 'CATSPER4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
CATSPER4 MUTATED 1 2 4 0 2 2 2
CATSPER4 WILD-TYPE 59 48 45 40 61 123 97
'CATSPER4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.183 (Fisher's exact test), Q value = 0.48

Table S17029.  Gene #1615: 'CATSPER4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
CATSPER4 MUTATED 2 4 0 7
CATSPER4 WILD-TYPE 128 74 68 189
'CATSPER4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.161 (Fisher's exact test), Q value = 0.45

Table S17030.  Gene #1615: 'CATSPER4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
CATSPER4 MUTATED 1 4 1 2 4 0 0 1 0
CATSPER4 WILD-TYPE 39 58 27 78 65 48 43 27 74
'CATSPER4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.872 (Fisher's exact test), Q value = 1

Table S17031.  Gene #1615: 'CATSPER4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
CATSPER4 MUTATED 1 1 0 1
CATSPER4 WILD-TYPE 32 30 27 18
'CATSPER4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.562 (Fisher's exact test), Q value = 0.87

Table S17032.  Gene #1615: 'CATSPER4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
CATSPER4 MUTATED 3 0 0 0
CATSPER4 WILD-TYPE 51 10 24 22
'ERN1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.823 (Fisher's exact test), Q value = 1

Table S17033.  Gene #1616: 'ERN1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ERN1 MUTATED 1 2 0 0
ERN1 WILD-TYPE 177 181 101 20
'ERN1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.337 (Fisher's exact test), Q value = 0.66

Table S17034.  Gene #1616: 'ERN1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ERN1 MUTATED 1 0 2
ERN1 WILD-TYPE 88 160 136
'ERN1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.423 (Fisher's exact test), Q value = 0.75

Table S17035.  Gene #1616: 'ERN1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ERN1 MUTATED 2 0 1
ERN1 WILD-TYPE 180 133 71
'ERN1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.222 (Fisher's exact test), Q value = 0.54

Table S17036.  Gene #1616: 'ERN1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ERN1 MUTATED 0 0 2 1
ERN1 WILD-TYPE 112 96 90 185
'ERN1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.475 (Fisher's exact test), Q value = 0.8

Table S17037.  Gene #1616: 'ERN1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ERN1 MUTATED 0 1 1 0 0 1 0
ERN1 WILD-TYPE 60 49 48 40 63 124 99
'ERN1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.261 (Fisher's exact test), Q value = 0.58

Table S17038.  Gene #1616: 'ERN1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ERN1 MUTATED 1 1 1 0
ERN1 WILD-TYPE 129 77 67 196
'ERN1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.638 (Fisher's exact test), Q value = 0.93

Table S17039.  Gene #1616: 'ERN1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ERN1 MUTATED 1 1 0 0 0 0 0 0 1
ERN1 WILD-TYPE 39 61 28 80 69 48 43 28 73
'HECW2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00702 (Fisher's exact test), Q value = 0.077

Table S17040.  Gene #1617: 'HECW2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
HECW2 MUTATED 4 0 1 5
HECW2 WILD-TYPE 42 58 63 38

Figure S4315.  Get High-res Image Gene #1617: 'HECW2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'HECW2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0252 (Fisher's exact test), Q value = 0.16

Table S17041.  Gene #1617: 'HECW2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
HECW2 MUTATED 6 1 3
HECW2 WILD-TYPE 45 82 74

Figure S4316.  Get High-res Image Gene #1617: 'HECW2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'HECW2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00091 (Fisher's exact test), Q value = 0.023

Table S17042.  Gene #1617: 'HECW2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
HECW2 MUTATED 22 4 6 0
HECW2 WILD-TYPE 156 179 95 20

Figure S4317.  Get High-res Image Gene #1617: 'HECW2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'HECW2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.363 (Fisher's exact test), Q value = 0.69

Table S17043.  Gene #1617: 'HECW2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
HECW2 MUTATED 9 7 5
HECW2 WILD-TYPE 78 73 95
'HECW2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0574 (Fisher's exact test), Q value = 0.26

Table S17044.  Gene #1617: 'HECW2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
HECW2 MUTATED 3 8 15
HECW2 WILD-TYPE 86 152 123
'HECW2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.3 (Fisher's exact test), Q value = 0.63

Table S17045.  Gene #1617: 'HECW2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
HECW2 MUTATED 13 11 2
HECW2 WILD-TYPE 169 122 70
'HECW2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.352 (Fisher's exact test), Q value = 0.68

Table S17046.  Gene #1617: 'HECW2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
HECW2 MUTATED 7 5 10 10
HECW2 WILD-TYPE 105 91 82 176
'HECW2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00441 (Fisher's exact test), Q value = 0.061

Table S17047.  Gene #1617: 'HECW2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
HECW2 MUTATED 4 4 8 3 3 1 9
HECW2 WILD-TYPE 56 46 41 37 60 124 90

Figure S4318.  Get High-res Image Gene #1617: 'HECW2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'HECW2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.212 (Fisher's exact test), Q value = 0.52

Table S17048.  Gene #1617: 'HECW2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
HECW2 MUTATED 7 9 2 13
HECW2 WILD-TYPE 123 69 66 183
'HECW2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0371 (Fisher's exact test), Q value = 0.2

Table S17049.  Gene #1617: 'HECW2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
HECW2 MUTATED 0 10 3 4 7 2 1 1 3
HECW2 WILD-TYPE 40 52 25 76 62 46 42 27 71

Figure S4319.  Get High-res Image Gene #1617: 'HECW2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'HECW2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.114 (Fisher's exact test), Q value = 0.37

Table S17050.  Gene #1617: 'HECW2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
HECW2 MUTATED 1 4 1 4
HECW2 WILD-TYPE 32 27 26 15
'HECW2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S17051.  Gene #1617: 'HECW2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
HECW2 MUTATED 5 1 2 2
HECW2 WILD-TYPE 49 9 22 20
'CASP6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.277 (Fisher's exact test), Q value = 0.6

Table S17052.  Gene #1618: 'CASP6 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
CASP6 MUTATED 3 0 0 0
CASP6 WILD-TYPE 175 183 101 20
'CASP6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.796 (Fisher's exact test), Q value = 1

Table S17053.  Gene #1618: 'CASP6 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
CASP6 MUTATED 0 2 1
CASP6 WILD-TYPE 89 158 137
'CASP6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.589 (Fisher's exact test), Q value = 0.89

Table S17054.  Gene #1618: 'CASP6 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
CASP6 MUTATED 1 2 0
CASP6 WILD-TYPE 181 131 72
'CASP6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.521 (Fisher's exact test), Q value = 0.84

Table S17055.  Gene #1618: 'CASP6 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
CASP6 MUTATED 0 0 1 2
CASP6 WILD-TYPE 112 96 91 184
'CASP6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.582 (Fisher's exact test), Q value = 0.89

Table S17056.  Gene #1618: 'CASP6 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
CASP6 MUTATED 1 0 0 0 1 0 1
CASP6 WILD-TYPE 59 50 49 40 62 125 98
'CSGALNACT1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.113 (Fisher's exact test), Q value = 0.37

Table S17057.  Gene #1619: 'CSGALNACT1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
CSGALNACT1 MUTATED 7 2 0 0
CSGALNACT1 WILD-TYPE 171 181 101 20
'CSGALNACT1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0931 (Fisher's exact test), Q value = 0.33

Table S17058.  Gene #1619: 'CSGALNACT1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
CSGALNACT1 MUTATED 5 0 4
CSGALNACT1 WILD-TYPE 82 80 96
'CSGALNACT1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.389 (Fisher's exact test), Q value = 0.72

Table S17059.  Gene #1619: 'CSGALNACT1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
CSGALNACT1 MUTATED 1 2 5
CSGALNACT1 WILD-TYPE 88 158 133
'CSGALNACT1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.463 (Fisher's exact test), Q value = 0.79

Table S17060.  Gene #1619: 'CSGALNACT1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
CSGALNACT1 MUTATED 5 1 2
CSGALNACT1 WILD-TYPE 177 132 70
'CSGALNACT1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.015 (Fisher's exact test), Q value = 0.12

Table S17061.  Gene #1619: 'CSGALNACT1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
CSGALNACT1 MUTATED 2 3 4 0
CSGALNACT1 WILD-TYPE 110 93 88 186

Figure S4320.  Get High-res Image Gene #1619: 'CSGALNACT1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'CSGALNACT1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00644 (Fisher's exact test), Q value = 0.074

Table S17062.  Gene #1619: 'CSGALNACT1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
CSGALNACT1 MUTATED 2 0 3 1 3 0 0
CSGALNACT1 WILD-TYPE 58 50 46 39 60 125 99

Figure S4321.  Get High-res Image Gene #1619: 'CSGALNACT1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CSGALNACT1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0119 (Fisher's exact test), Q value = 0.11

Table S17063.  Gene #1619: 'CSGALNACT1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
CSGALNACT1 MUTATED 3 5 0 1
CSGALNACT1 WILD-TYPE 127 73 68 195

Figure S4322.  Get High-res Image Gene #1619: 'CSGALNACT1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'CSGALNACT1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.145 (Fisher's exact test), Q value = 0.42

Table S17064.  Gene #1619: 'CSGALNACT1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
CSGALNACT1 MUTATED 2 3 0 0 1 2 1 0 0
CSGALNACT1 WILD-TYPE 38 59 28 80 68 46 42 28 74
'CSGALNACT1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S17065.  Gene #1619: 'CSGALNACT1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
CSGALNACT1 MUTATED 1 1 1 0
CSGALNACT1 WILD-TYPE 32 30 26 19
'CSGALNACT1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S17066.  Gene #1619: 'CSGALNACT1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
CSGALNACT1 MUTATED 2 0 1 0
CSGALNACT1 WILD-TYPE 52 10 23 22
'SF3B2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00457 (Fisher's exact test), Q value = 0.061

Table S17067.  Gene #1620: 'SF3B2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
SF3B2 MUTATED 6 0 2 2
SF3B2 WILD-TYPE 172 183 99 18

Figure S4323.  Get High-res Image Gene #1620: 'SF3B2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'SF3B2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.396 (Fisher's exact test), Q value = 0.72

Table S17068.  Gene #1620: 'SF3B2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
SF3B2 MUTATED 2 1 5
SF3B2 WILD-TYPE 85 79 95
'SF3B2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.245 (Fisher's exact test), Q value = 0.57

Table S17069.  Gene #1620: 'SF3B2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
SF3B2 MUTATED 1 7 2
SF3B2 WILD-TYPE 88 153 136
'SF3B2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.481 (Fisher's exact test), Q value = 0.81

Table S17070.  Gene #1620: 'SF3B2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
SF3B2 MUTATED 3 5 2
SF3B2 WILD-TYPE 179 128 70
'SF3B2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.107 (Fisher's exact test), Q value = 0.36

Table S17071.  Gene #1620: 'SF3B2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
SF3B2 MUTATED 1 5 2 2
SF3B2 WILD-TYPE 111 91 90 184
'SF3B2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0156 (Fisher's exact test), Q value = 0.12

Table S17072.  Gene #1620: 'SF3B2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
SF3B2 MUTATED 1 2 4 1 0 0 2
SF3B2 WILD-TYPE 59 48 45 39 63 125 97

Figure S4324.  Get High-res Image Gene #1620: 'SF3B2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'SF3B2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.084 (Fisher's exact test), Q value = 0.31

Table S17073.  Gene #1620: 'SF3B2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
SF3B2 MUTATED 6 2 0 2
SF3B2 WILD-TYPE 124 76 68 194
'SF3B2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.199 (Fisher's exact test), Q value = 0.5

Table S17074.  Gene #1620: 'SF3B2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
SF3B2 MUTATED 2 1 2 1 3 1 0 0 0
SF3B2 WILD-TYPE 38 61 26 79 66 47 43 28 74
'SF3B2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.135 (Fisher's exact test), Q value = 0.41

Table S17075.  Gene #1620: 'SF3B2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
SF3B2 MUTATED 1 0 0 2
SF3B2 WILD-TYPE 32 31 27 17
'SF3B2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S17076.  Gene #1620: 'SF3B2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
SF3B2 MUTATED 2 0 1 0
SF3B2 WILD-TYPE 52 10 23 22
'ZNF232 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.342 (Fisher's exact test), Q value = 0.67

Table S17077.  Gene #1621: 'ZNF232 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ZNF232 MUTATED 3 0 1 0
ZNF232 WILD-TYPE 175 183 100 20
'ZNF232 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S17078.  Gene #1621: 'ZNF232 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ZNF232 MUTATED 1 1 2
ZNF232 WILD-TYPE 86 79 98
'ZNF232 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.166 (Fisher's exact test), Q value = 0.46

Table S17079.  Gene #1621: 'ZNF232 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ZNF232 MUTATED 1 0 3
ZNF232 WILD-TYPE 88 160 135
'ZNF232 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.667 (Fisher's exact test), Q value = 0.95

Table S17080.  Gene #1621: 'ZNF232 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ZNF232 MUTATED 3 1 0
ZNF232 WILD-TYPE 179 132 72
'ZNF232 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0292 (Fisher's exact test), Q value = 0.17

Table S17081.  Gene #1621: 'ZNF232 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ZNF232 MUTATED 1 3 0 0
ZNF232 WILD-TYPE 111 93 92 186

Figure S4325.  Get High-res Image Gene #1621: 'ZNF232 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'ZNF232 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0475 (Fisher's exact test), Q value = 0.23

Table S17082.  Gene #1621: 'ZNF232 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ZNF232 MUTATED 0 1 2 0 1 0 0
ZNF232 WILD-TYPE 60 49 47 40 62 125 99

Figure S4326.  Get High-res Image Gene #1621: 'ZNF232 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ZNF232 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S17083.  Gene #1621: 'ZNF232 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ZNF232 MUTATED 1 1 0 2
ZNF232 WILD-TYPE 129 77 68 194
'ZNF232 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.88 (Fisher's exact test), Q value = 1

Table S17084.  Gene #1621: 'ZNF232 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ZNF232 MUTATED 0 1 0 0 1 0 1 0 1
ZNF232 WILD-TYPE 40 61 28 80 68 48 42 28 73
'TRIM55 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.267 (Fisher's exact test), Q value = 0.59

Table S17085.  Gene #1622: 'TRIM55 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
TRIM55 MUTATED 1 2 1 4
TRIM55 WILD-TYPE 45 56 63 39
'TRIM55 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.25 (Fisher's exact test), Q value = 0.58

Table S17086.  Gene #1622: 'TRIM55 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
TRIM55 MUTATED 3 1 4
TRIM55 WILD-TYPE 48 82 73
'TRIM55 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00037 (Fisher's exact test), Q value = 0.013

Table S17087.  Gene #1622: 'TRIM55 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
TRIM55 MUTATED 16 1 2 0
TRIM55 WILD-TYPE 162 182 99 20

Figure S4327.  Get High-res Image Gene #1622: 'TRIM55 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'TRIM55 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.614 (Fisher's exact test), Q value = 0.91

Table S17088.  Gene #1622: 'TRIM55 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
TRIM55 MUTATED 5 2 5
TRIM55 WILD-TYPE 82 78 95
'TRIM55 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.477 (Fisher's exact test), Q value = 0.81

Table S17089.  Gene #1622: 'TRIM55 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
TRIM55 MUTATED 3 4 7
TRIM55 WILD-TYPE 86 156 131
'TRIM55 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S17090.  Gene #1622: 'TRIM55 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
TRIM55 MUTATED 7 5 2
TRIM55 WILD-TYPE 175 128 70
'TRIM55 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.808 (Fisher's exact test), Q value = 1

Table S17091.  Gene #1622: 'TRIM55 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
TRIM55 MUTATED 3 5 4 7
TRIM55 WILD-TYPE 109 91 88 179
'TRIM55 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.177 (Fisher's exact test), Q value = 0.48

Table S17092.  Gene #1622: 'TRIM55 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
TRIM55 MUTATED 2 4 4 0 2 2 5
TRIM55 WILD-TYPE 58 46 45 40 61 123 94
'TRIM55 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.17 (Fisher's exact test), Q value = 0.47

Table S17093.  Gene #1622: 'TRIM55 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
TRIM55 MUTATED 4 5 0 9
TRIM55 WILD-TYPE 126 73 68 187
'TRIM55 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.812 (Fisher's exact test), Q value = 1

Table S17094.  Gene #1622: 'TRIM55 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
TRIM55 MUTATED 1 4 1 4 4 2 1 0 1
TRIM55 WILD-TYPE 39 58 27 76 65 46 42 28 73
'TRIM55 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S17095.  Gene #1622: 'TRIM55 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
TRIM55 MUTATED 1 1 1 1
TRIM55 WILD-TYPE 32 30 26 18
'TRIM55 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.546 (Fisher's exact test), Q value = 0.86

Table S17096.  Gene #1622: 'TRIM55 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
TRIM55 MUTATED 2 0 0 2
TRIM55 WILD-TYPE 52 10 24 20
'IFITM5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.863 (Fisher's exact test), Q value = 1

Table S17097.  Gene #1623: 'IFITM5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
IFITM5 MUTATED 2 1 1 0
IFITM5 WILD-TYPE 176 182 100 20
'IFITM5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.324 (Fisher's exact test), Q value = 0.65

Table S17098.  Gene #1623: 'IFITM5 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
IFITM5 MUTATED 0 1 3
IFITM5 WILD-TYPE 87 79 97
'IFITM5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.167 (Fisher's exact test), Q value = 0.46

Table S17099.  Gene #1623: 'IFITM5 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
IFITM5 MUTATED 1 0 3
IFITM5 WILD-TYPE 88 160 135
'IFITM5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.402 (Fisher's exact test), Q value = 0.73

Table S17100.  Gene #1623: 'IFITM5 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
IFITM5 MUTATED 3 0 1
IFITM5 WILD-TYPE 179 133 71
'IFITM5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0382 (Fisher's exact test), Q value = 0.2

Table S17101.  Gene #1623: 'IFITM5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
IFITM5 MUTATED 0 2 2 0
IFITM5 WILD-TYPE 112 94 90 186

Figure S4328.  Get High-res Image Gene #1623: 'IFITM5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'IFITM5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0207 (Fisher's exact test), Q value = 0.15

Table S17102.  Gene #1623: 'IFITM5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
IFITM5 MUTATED 0 0 2 0 2 0 0
IFITM5 WILD-TYPE 60 50 47 40 61 125 99

Figure S4329.  Get High-res Image Gene #1623: 'IFITM5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'IFITM5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.212 (Fisher's exact test), Q value = 0.52

Table S17103.  Gene #1623: 'IFITM5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
IFITM5 MUTATED 0 2 0 2
IFITM5 WILD-TYPE 130 76 68 194
'IFITM5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.31 (Fisher's exact test), Q value = 0.64

Table S17104.  Gene #1623: 'IFITM5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
IFITM5 MUTATED 0 2 0 0 2 0 0 0 0
IFITM5 WILD-TYPE 40 60 28 80 67 48 43 28 74
'C9ORF125 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00392 (Fisher's exact test), Q value = 0.057

Table S17105.  Gene #1624: 'C9ORF125 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
C9ORF125 MUTATED 4 0 0 0
C9ORF125 WILD-TYPE 42 58 64 43

Figure S4330.  Get High-res Image Gene #1624: 'C9ORF125 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'C9ORF125 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00339 (Fisher's exact test), Q value = 0.053

Table S17106.  Gene #1624: 'C9ORF125 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
C9ORF125 MUTATED 4 0 0
C9ORF125 WILD-TYPE 47 83 77

Figure S4331.  Get High-res Image Gene #1624: 'C9ORF125 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'C9ORF125 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00022 (Fisher's exact test), Q value = 0.0088

Table S17107.  Gene #1624: 'C9ORF125 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
C9ORF125 MUTATED 12 0 0 0
C9ORF125 WILD-TYPE 166 183 101 20

Figure S4332.  Get High-res Image Gene #1624: 'C9ORF125 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'C9ORF125 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.068 (Fisher's exact test), Q value = 0.28

Table S17108.  Gene #1624: 'C9ORF125 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
C9ORF125 MUTATED 2 0 6
C9ORF125 WILD-TYPE 85 80 94
'C9ORF125 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.318 (Fisher's exact test), Q value = 0.65

Table S17109.  Gene #1624: 'C9ORF125 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
C9ORF125 MUTATED 1 3 6
C9ORF125 WILD-TYPE 88 157 132
'C9ORF125 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.84 (Fisher's exact test), Q value = 1

Table S17110.  Gene #1624: 'C9ORF125 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
C9ORF125 MUTATED 4 4 2
C9ORF125 WILD-TYPE 178 129 70
'C9ORF125 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0306 (Fisher's exact test), Q value = 0.18

Table S17111.  Gene #1624: 'C9ORF125 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
C9ORF125 MUTATED 0 6 2 4
C9ORF125 WILD-TYPE 112 90 90 182

Figure S4333.  Get High-res Image Gene #1624: 'C9ORF125 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'C9ORF125 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 2e-05 (Fisher's exact test), Q value = 0.0017

Table S17112.  Gene #1624: 'C9ORF125 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
C9ORF125 MUTATED 0 1 7 0 0 0 4
C9ORF125 WILD-TYPE 60 49 42 40 63 125 95

Figure S4334.  Get High-res Image Gene #1624: 'C9ORF125 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'C9ORF125 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.702 (Fisher's exact test), Q value = 0.97

Table S17113.  Gene #1624: 'C9ORF125 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
C9ORF125 MUTATED 3 2 0 5
C9ORF125 WILD-TYPE 127 76 68 191
'C9ORF125 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0282 (Fisher's exact test), Q value = 0.17

Table S17114.  Gene #1624: 'C9ORF125 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
C9ORF125 MUTATED 1 2 0 0 6 0 0 0 1
C9ORF125 WILD-TYPE 39 60 28 80 63 48 43 28 73

Figure S4335.  Get High-res Image Gene #1624: 'C9ORF125 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'IPPK MUTATION STATUS' versus 'CN_CNMF'

P value = 0.462 (Fisher's exact test), Q value = 0.79

Table S17115.  Gene #1625: 'IPPK MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
IPPK MUTATED 6 2 1 0
IPPK WILD-TYPE 172 181 100 20
'IPPK MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.139 (Fisher's exact test), Q value = 0.42

Table S17116.  Gene #1625: 'IPPK MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
IPPK MUTATED 5 1 1
IPPK WILD-TYPE 82 79 99
'IPPK MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00467 (Fisher's exact test), Q value = 0.062

Table S17117.  Gene #1625: 'IPPK MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
IPPK MUTATED 1 0 7
IPPK WILD-TYPE 88 160 131

Figure S4336.  Get High-res Image Gene #1625: 'IPPK MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'IPPK MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.328 (Fisher's exact test), Q value = 0.66

Table S17118.  Gene #1625: 'IPPK MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
IPPK MUTATED 6 1 1
IPPK WILD-TYPE 176 132 71
'IPPK MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.234 (Fisher's exact test), Q value = 0.55

Table S17119.  Gene #1625: 'IPPK MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
IPPK MUTATED 1 2 4 2
IPPK WILD-TYPE 111 94 88 184
'IPPK MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.404 (Fisher's exact test), Q value = 0.73

Table S17120.  Gene #1625: 'IPPK MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
IPPK MUTATED 1 2 2 0 2 1 1
IPPK WILD-TYPE 59 48 47 40 61 124 98
'IPPK MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.377 (Fisher's exact test), Q value = 0.71

Table S17121.  Gene #1625: 'IPPK MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
IPPK MUTATED 3 3 0 3
IPPK WILD-TYPE 127 75 68 193
'IPPK MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.561 (Fisher's exact test), Q value = 0.87

Table S17122.  Gene #1625: 'IPPK MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
IPPK MUTATED 1 3 1 2 1 1 0 0 0
IPPK WILD-TYPE 39 59 27 78 68 47 43 28 74
'IPPK MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.136 (Fisher's exact test), Q value = 0.41

Table S17123.  Gene #1625: 'IPPK MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
IPPK MUTATED 1 0 0 2
IPPK WILD-TYPE 32 31 27 17
'IPPK MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.84 (Fisher's exact test), Q value = 1

Table S17124.  Gene #1625: 'IPPK MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
IPPK MUTATED 2 0 0 1
IPPK WILD-TYPE 52 10 24 21
'ARHGEF7 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0152 (Fisher's exact test), Q value = 0.12

Table S17125.  Gene #1626: 'ARHGEF7 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ARHGEF7 MUTATED 4 1 0 0
ARHGEF7 WILD-TYPE 42 57 64 43

Figure S4337.  Get High-res Image Gene #1626: 'ARHGEF7 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'ARHGEF7 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0189 (Fisher's exact test), Q value = 0.14

Table S17126.  Gene #1626: 'ARHGEF7 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ARHGEF7 MUTATED 4 1 0
ARHGEF7 WILD-TYPE 47 82 77

Figure S4338.  Get High-res Image Gene #1626: 'ARHGEF7 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'ARHGEF7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.167 (Fisher's exact test), Q value = 0.46

Table S17127.  Gene #1626: 'ARHGEF7 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ARHGEF7 MUTATED 12 4 4 1
ARHGEF7 WILD-TYPE 166 179 97 19
'ARHGEF7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.105 (Fisher's exact test), Q value = 0.36

Table S17128.  Gene #1626: 'ARHGEF7 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ARHGEF7 MUTATED 6 1 8
ARHGEF7 WILD-TYPE 81 79 92
'ARHGEF7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.282 (Fisher's exact test), Q value = 0.61

Table S17129.  Gene #1626: 'ARHGEF7 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ARHGEF7 MUTATED 2 10 4
ARHGEF7 WILD-TYPE 87 150 134
'ARHGEF7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.627 (Fisher's exact test), Q value = 0.92

Table S17130.  Gene #1626: 'ARHGEF7 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ARHGEF7 MUTATED 6 6 4
ARHGEF7 WILD-TYPE 176 127 68
'ARHGEF7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.256 (Fisher's exact test), Q value = 0.58

Table S17131.  Gene #1626: 'ARHGEF7 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ARHGEF7 MUTATED 2 6 6 7
ARHGEF7 WILD-TYPE 110 90 86 179
'ARHGEF7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00565 (Fisher's exact test), Q value = 0.068

Table S17132.  Gene #1626: 'ARHGEF7 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ARHGEF7 MUTATED 2 3 7 0 2 1 6
ARHGEF7 WILD-TYPE 58 47 42 40 61 124 93

Figure S4339.  Get High-res Image Gene #1626: 'ARHGEF7 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ARHGEF7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.503 (Fisher's exact test), Q value = 0.83

Table S17133.  Gene #1626: 'ARHGEF7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ARHGEF7 MUTATED 8 2 3 6
ARHGEF7 WILD-TYPE 122 76 65 190
'ARHGEF7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.194 (Fisher's exact test), Q value = 0.5

Table S17134.  Gene #1626: 'ARHGEF7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ARHGEF7 MUTATED 3 3 2 3 6 0 1 0 1
ARHGEF7 WILD-TYPE 37 59 26 77 63 48 42 28 73
'ARHGEF7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.269 (Fisher's exact test), Q value = 0.59

Table S17135.  Gene #1626: 'ARHGEF7 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
ARHGEF7 MUTATED 1 0 1 2
ARHGEF7 WILD-TYPE 32 31 26 17
'ARHGEF7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.128 (Fisher's exact test), Q value = 0.4

Table S17136.  Gene #1626: 'ARHGEF7 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
ARHGEF7 MUTATED 1 0 3 0
ARHGEF7 WILD-TYPE 53 10 21 22
'WDR65 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0226 (Fisher's exact test), Q value = 0.15

Table S17137.  Gene #1627: 'WDR65 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
WDR65 MUTATED 6 0 0 0
WDR65 WILD-TYPE 172 183 101 20

Figure S4340.  Get High-res Image Gene #1627: 'WDR65 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'WDR65 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.392 (Fisher's exact test), Q value = 0.72

Table S17138.  Gene #1627: 'WDR65 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
WDR65 MUTATED 1 0 3
WDR65 WILD-TYPE 86 80 97
'WDR65 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.329 (Fisher's exact test), Q value = 0.66

Table S17139.  Gene #1627: 'WDR65 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
WDR65 MUTATED 1 1 4
WDR65 WILD-TYPE 88 159 134
'WDR65 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.666 (Fisher's exact test), Q value = 0.95

Table S17140.  Gene #1627: 'WDR65 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
WDR65 MUTATED 4 2 0
WDR65 WILD-TYPE 178 131 72
'WDR65 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.35 (Fisher's exact test), Q value = 0.68

Table S17141.  Gene #1627: 'WDR65 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
WDR65 MUTATED 0 2 2 2
WDR65 WILD-TYPE 112 94 90 184
'WDR65 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0318 (Fisher's exact test), Q value = 0.18

Table S17142.  Gene #1627: 'WDR65 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
WDR65 MUTATED 0 1 3 0 0 0 2
WDR65 WILD-TYPE 60 49 46 40 63 125 97

Figure S4341.  Get High-res Image Gene #1627: 'WDR65 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'WDR65 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.886 (Fisher's exact test), Q value = 1

Table S17143.  Gene #1627: 'WDR65 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
WDR65 MUTATED 2 1 0 3
WDR65 WILD-TYPE 128 77 68 193
'WDR65 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.54 (Fisher's exact test), Q value = 0.86

Table S17144.  Gene #1627: 'WDR65 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
WDR65 MUTATED 0 1 0 1 3 0 1 0 0
WDR65 WILD-TYPE 40 61 28 79 66 48 42 28 74
'WDR65 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00437 (Fisher's exact test), Q value = 0.061

Table S17145.  Gene #1627: 'WDR65 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
WDR65 MUTATED 0 0 0 3
WDR65 WILD-TYPE 33 31 27 16

Figure S4342.  Get High-res Image Gene #1627: 'WDR65 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'WDR65 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S17146.  Gene #1627: 'WDR65 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
WDR65 MUTATED 2 0 1 0
WDR65 WILD-TYPE 52 10 23 22
'APLP1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.438 (Fisher's exact test), Q value = 0.76

Table S17147.  Gene #1628: 'APLP1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
APLP1 MUTATED 3 3 1 3
APLP1 WILD-TYPE 43 55 63 40
'APLP1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0298 (Fisher's exact test), Q value = 0.18

Table S17148.  Gene #1628: 'APLP1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
APLP1 MUTATED 6 3 1
APLP1 WILD-TYPE 45 80 76

Figure S4343.  Get High-res Image Gene #1628: 'APLP1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'APLP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0315 (Fisher's exact test), Q value = 0.18

Table S17149.  Gene #1628: 'APLP1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
APLP1 MUTATED 12 2 3 0
APLP1 WILD-TYPE 166 181 98 20

Figure S4344.  Get High-res Image Gene #1628: 'APLP1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'APLP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.819 (Fisher's exact test), Q value = 1

Table S17150.  Gene #1628: 'APLP1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
APLP1 MUTATED 2 2 4
APLP1 WILD-TYPE 85 78 96
'APLP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.61 (Fisher's exact test), Q value = 0.91

Table S17151.  Gene #1628: 'APLP1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
APLP1 MUTATED 4 5 3
APLP1 WILD-TYPE 85 155 135
'APLP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.86 (Fisher's exact test), Q value = 1

Table S17152.  Gene #1628: 'APLP1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
APLP1 MUTATED 5 4 3
APLP1 WILD-TYPE 177 129 69
'APLP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0784 (Fisher's exact test), Q value = 0.3

Table S17153.  Gene #1628: 'APLP1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
APLP1 MUTATED 3 6 0 8
APLP1 WILD-TYPE 109 90 92 178
'APLP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.521 (Fisher's exact test), Q value = 0.84

Table S17154.  Gene #1628: 'APLP1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
APLP1 MUTATED 1 2 3 0 1 4 6
APLP1 WILD-TYPE 59 48 46 40 62 121 93
'APLP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.103 (Fisher's exact test), Q value = 0.35

Table S17155.  Gene #1628: 'APLP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
APLP1 MUTATED 4 1 0 11
APLP1 WILD-TYPE 126 77 68 185
'APLP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.432 (Fisher's exact test), Q value = 0.76

Table S17156.  Gene #1628: 'APLP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
APLP1 MUTATED 0 2 1 3 6 1 0 1 2
APLP1 WILD-TYPE 40 60 27 77 63 47 43 27 72
'KIAA0319 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.033 (Fisher's exact test), Q value = 0.19

Table S17157.  Gene #1629: 'KIAA0319 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
KIAA0319 MUTATED 2 1 0 4
KIAA0319 WILD-TYPE 44 57 64 39

Figure S4345.  Get High-res Image Gene #1629: 'KIAA0319 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'KIAA0319 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.549 (Fisher's exact test), Q value = 0.87

Table S17158.  Gene #1629: 'KIAA0319 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
KIAA0319 MUTATED 3 2 2
KIAA0319 WILD-TYPE 48 81 75
'KIAA0319 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00992 (Fisher's exact test), Q value = 0.095

Table S17159.  Gene #1629: 'KIAA0319 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
KIAA0319 MUTATED 12 4 0 1
KIAA0319 WILD-TYPE 166 179 101 19

Figure S4346.  Get High-res Image Gene #1629: 'KIAA0319 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'KIAA0319 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.257 (Fisher's exact test), Q value = 0.58

Table S17160.  Gene #1629: 'KIAA0319 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
KIAA0319 MUTATED 3 1 6
KIAA0319 WILD-TYPE 84 79 94
'KIAA0319 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.735 (Fisher's exact test), Q value = 1

Table S17161.  Gene #1629: 'KIAA0319 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
KIAA0319 MUTATED 2 6 6
KIAA0319 WILD-TYPE 87 154 132
'KIAA0319 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.359 (Fisher's exact test), Q value = 0.69

Table S17162.  Gene #1629: 'KIAA0319 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
KIAA0319 MUTATED 6 7 1
KIAA0319 WILD-TYPE 176 126 71
'KIAA0319 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0193 (Fisher's exact test), Q value = 0.14

Table S17163.  Gene #1629: 'KIAA0319 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
KIAA0319 MUTATED 1 8 1 7
KIAA0319 WILD-TYPE 111 88 91 179

Figure S4347.  Get High-res Image Gene #1629: 'KIAA0319 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'KIAA0319 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.217 (Fisher's exact test), Q value = 0.53

Table S17164.  Gene #1629: 'KIAA0319 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
KIAA0319 MUTATED 2 4 4 0 1 3 3
KIAA0319 WILD-TYPE 58 46 45 40 62 122 96
'KIAA0319 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.531 (Fisher's exact test), Q value = 0.85

Table S17165.  Gene #1629: 'KIAA0319 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
KIAA0319 MUTATED 7 1 2 7
KIAA0319 WILD-TYPE 123 77 66 189
'KIAA0319 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.138 (Fisher's exact test), Q value = 0.41

Table S17166.  Gene #1629: 'KIAA0319 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
KIAA0319 MUTATED 2 1 2 2 6 0 0 0 4
KIAA0319 WILD-TYPE 38 61 26 78 63 48 43 28 70
'MECOM MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00956 (Fisher's exact test), Q value = 0.093

Table S17167.  Gene #1630: 'MECOM MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
MECOM MUTATED 2 1 0 5
MECOM WILD-TYPE 44 57 64 38

Figure S4348.  Get High-res Image Gene #1630: 'MECOM MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'MECOM MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0622 (Fisher's exact test), Q value = 0.27

Table S17168.  Gene #1630: 'MECOM MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
MECOM MUTATED 5 2 1
MECOM WILD-TYPE 46 81 76
'MECOM MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00188 (Fisher's exact test), Q value = 0.036

Table S17169.  Gene #1630: 'MECOM MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
MECOM MUTATED 16 3 1 1
MECOM WILD-TYPE 162 180 100 19

Figure S4349.  Get High-res Image Gene #1630: 'MECOM MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'MECOM MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.527 (Fisher's exact test), Q value = 0.85

Table S17170.  Gene #1630: 'MECOM MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
MECOM MUTATED 5 2 6
MECOM WILD-TYPE 82 78 94
'MECOM MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.236 (Fisher's exact test), Q value = 0.56

Table S17171.  Gene #1630: 'MECOM MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
MECOM MUTATED 3 5 10
MECOM WILD-TYPE 86 155 128
'MECOM MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.532 (Fisher's exact test), Q value = 0.85

Table S17172.  Gene #1630: 'MECOM MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
MECOM MUTATED 11 5 2
MECOM WILD-TYPE 171 128 70
'MECOM MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.218 (Fisher's exact test), Q value = 0.53

Table S17173.  Gene #1630: 'MECOM MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
MECOM MUTATED 2 3 7 9
MECOM WILD-TYPE 110 93 85 177
'MECOM MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 5e-05 (Fisher's exact test), Q value = 0.0032

Table S17174.  Gene #1630: 'MECOM MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
MECOM MUTATED 3 1 9 0 0 1 7
MECOM WILD-TYPE 57 49 40 40 63 124 92

Figure S4350.  Get High-res Image Gene #1630: 'MECOM MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'MECOM MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.918 (Fisher's exact test), Q value = 1

Table S17175.  Gene #1630: 'MECOM MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
MECOM MUTATED 6 2 3 9
MECOM WILD-TYPE 124 76 65 187
'MECOM MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0239 (Fisher's exact test), Q value = 0.16

Table S17176.  Gene #1630: 'MECOM MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
MECOM MUTATED 1 4 1 1 9 0 2 0 2
MECOM WILD-TYPE 39 58 27 79 60 48 41 28 72

Figure S4351.  Get High-res Image Gene #1630: 'MECOM MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'MECOM MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00386 (Fisher's exact test), Q value = 0.056

Table S17177.  Gene #1630: 'MECOM MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
MECOM MUTATED 1 0 0 4
MECOM WILD-TYPE 32 31 27 15

Figure S4352.  Get High-res Image Gene #1630: 'MECOM MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'MECOM MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.579 (Fisher's exact test), Q value = 0.88

Table S17178.  Gene #1630: 'MECOM MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
MECOM MUTATED 3 0 2 0
MECOM WILD-TYPE 51 10 22 22
'MYO3A MUTATION STATUS' versus 'MRNA_CNMF'

P value = 3e-05 (Fisher's exact test), Q value = 0.0022

Table S17179.  Gene #1631: 'MYO3A MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
MYO3A MUTATED 8 0 0 4
MYO3A WILD-TYPE 38 58 64 39

Figure S4353.  Get High-res Image Gene #1631: 'MYO3A MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'MYO3A MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00322 (Fisher's exact test), Q value = 0.051

Table S17180.  Gene #1631: 'MYO3A MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
MYO3A MUTATED 8 3 1
MYO3A WILD-TYPE 43 80 76

Figure S4354.  Get High-res Image Gene #1631: 'MYO3A MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'MYO3A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0543 (Fisher's exact test), Q value = 0.25

Table S17181.  Gene #1631: 'MYO3A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
MYO3A MUTATED 24 11 6 2
MYO3A WILD-TYPE 154 172 95 18
'MYO3A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.752 (Fisher's exact test), Q value = 1

Table S17182.  Gene #1631: 'MYO3A MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
MYO3A MUTATED 12 8 13
MYO3A WILD-TYPE 75 72 87
'MYO3A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0128 (Fisher's exact test), Q value = 0.11

Table S17183.  Gene #1631: 'MYO3A MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
MYO3A MUTATED 2 20 15
MYO3A WILD-TYPE 87 140 123

Figure S4355.  Get High-res Image Gene #1631: 'MYO3A MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'MYO3A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.551 (Fisher's exact test), Q value = 0.87

Table S17184.  Gene #1631: 'MYO3A MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
MYO3A MUTATED 15 13 9
MYO3A WILD-TYPE 167 120 63
'MYO3A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.409 (Fisher's exact test), Q value = 0.74

Table S17185.  Gene #1631: 'MYO3A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
MYO3A MUTATED 10 11 10 12
MYO3A WILD-TYPE 102 85 82 174
'MYO3A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00105 (Fisher's exact test), Q value = 0.025

Table S17186.  Gene #1631: 'MYO3A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
MYO3A MUTATED 9 6 9 1 6 2 10
MYO3A WILD-TYPE 51 44 40 39 57 123 89

Figure S4356.  Get High-res Image Gene #1631: 'MYO3A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'MYO3A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0842 (Fisher's exact test), Q value = 0.31

Table S17187.  Gene #1631: 'MYO3A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
MYO3A MUTATED 15 10 2 14
MYO3A WILD-TYPE 115 68 66 182
'MYO3A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.585 (Fisher's exact test), Q value = 0.89

Table S17188.  Gene #1631: 'MYO3A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
MYO3A MUTATED 4 8 2 5 10 4 3 1 4
MYO3A WILD-TYPE 36 54 26 75 59 44 40 27 70
'MYO3A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0321 (Fisher's exact test), Q value = 0.18

Table S17189.  Gene #1631: 'MYO3A MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
MYO3A MUTATED 3 0 1 4
MYO3A WILD-TYPE 30 31 26 15

Figure S4357.  Get High-res Image Gene #1631: 'MYO3A MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'MYO3A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.691 (Fisher's exact test), Q value = 0.97

Table S17190.  Gene #1631: 'MYO3A MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
MYO3A MUTATED 4 0 3 1
MYO3A WILD-TYPE 50 10 21 21
'PIK3C2G MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0714 (Fisher's exact test), Q value = 0.29

Table S17191.  Gene #1632: 'PIK3C2G MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
PIK3C2G MUTATED 3 0 1 3
PIK3C2G WILD-TYPE 43 58 63 40
'PIK3C2G MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S17192.  Gene #1632: 'PIK3C2G MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
PIK3C2G MUTATED 2 3 2
PIK3C2G WILD-TYPE 49 80 75
'PIK3C2G MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0013 (Fisher's exact test), Q value = 0.029

Table S17193.  Gene #1632: 'PIK3C2G MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
PIK3C2G MUTATED 17 2 3 1
PIK3C2G WILD-TYPE 161 181 98 19

Figure S4358.  Get High-res Image Gene #1632: 'PIK3C2G MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'PIK3C2G MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.334 (Fisher's exact test), Q value = 0.66

Table S17194.  Gene #1632: 'PIK3C2G MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
PIK3C2G MUTATED 8 3 5
PIK3C2G WILD-TYPE 79 77 95
'PIK3C2G MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0914 (Fisher's exact test), Q value = 0.33

Table S17195.  Gene #1632: 'PIK3C2G MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
PIK3C2G MUTATED 1 6 10
PIK3C2G WILD-TYPE 88 154 128
'PIK3C2G MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.393 (Fisher's exact test), Q value = 0.72

Table S17196.  Gene #1632: 'PIK3C2G MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
PIK3C2G MUTATED 11 4 2
PIK3C2G WILD-TYPE 171 129 70
'PIK3C2G MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.317 (Fisher's exact test), Q value = 0.65

Table S17197.  Gene #1632: 'PIK3C2G MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
PIK3C2G MUTATED 3 7 6 7
PIK3C2G WILD-TYPE 109 89 86 179
'PIK3C2G MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0796 (Fisher's exact test), Q value = 0.3

Table S17198.  Gene #1632: 'PIK3C2G MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
PIK3C2G MUTATED 4 3 6 0 4 3 3
PIK3C2G WILD-TYPE 56 47 43 40 59 122 96
'PIK3C2G MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.613 (Fisher's exact test), Q value = 0.91

Table S17199.  Gene #1632: 'PIK3C2G MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
PIK3C2G MUTATED 8 5 3 7
PIK3C2G WILD-TYPE 122 73 65 189
'PIK3C2G MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.361 (Fisher's exact test), Q value = 0.69

Table S17200.  Gene #1632: 'PIK3C2G MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
PIK3C2G MUTATED 1 5 2 3 5 2 4 0 1
PIK3C2G WILD-TYPE 39 57 26 77 64 46 39 28 73
'PIK3C2G MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.932 (Fisher's exact test), Q value = 1

Table S17201.  Gene #1632: 'PIK3C2G MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
PIK3C2G MUTATED 1 2 1 1
PIK3C2G WILD-TYPE 32 29 26 18
'PIK3C2G MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.893 (Fisher's exact test), Q value = 1

Table S17202.  Gene #1632: 'PIK3C2G MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
PIK3C2G MUTATED 2 0 2 1
PIK3C2G WILD-TYPE 52 10 22 21
'WFDC5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.27 (Fisher's exact test), Q value = 0.59

Table S17203.  Gene #1633: 'WFDC5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
WFDC5 MUTATED 2 2 0 1
WFDC5 WILD-TYPE 176 181 101 19
'WFDC5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.835 (Fisher's exact test), Q value = 1

Table S17204.  Gene #1633: 'WFDC5 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
WFDC5 MUTATED 2 1 1
WFDC5 WILD-TYPE 85 79 99
'WFDC5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.106 (Fisher's exact test), Q value = 0.36

Table S17205.  Gene #1633: 'WFDC5 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
WFDC5 MUTATED 2 0 3
WFDC5 WILD-TYPE 87 160 135
'WFDC5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.213 (Fisher's exact test), Q value = 0.52

Table S17206.  Gene #1633: 'WFDC5 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
WFDC5 MUTATED 4 0 1
WFDC5 WILD-TYPE 178 133 71
'WFDC5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.777 (Fisher's exact test), Q value = 1

Table S17207.  Gene #1633: 'WFDC5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
WFDC5 MUTATED 2 1 1 1
WFDC5 WILD-TYPE 110 95 91 185
'WFDC5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.397 (Fisher's exact test), Q value = 0.72

Table S17208.  Gene #1633: 'WFDC5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
WFDC5 MUTATED 1 0 1 1 1 0 1
WFDC5 WILD-TYPE 59 50 48 39 62 125 98
'WFDC5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.407 (Fisher's exact test), Q value = 0.73

Table S17209.  Gene #1633: 'WFDC5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
WFDC5 MUTATED 3 1 0 1
WFDC5 WILD-TYPE 127 77 68 195
'WFDC5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.765 (Fisher's exact test), Q value = 1

Table S17210.  Gene #1633: 'WFDC5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
WFDC5 MUTATED 0 2 0 1 1 0 1 0 0
WFDC5 WILD-TYPE 40 60 28 79 68 48 42 28 74
'ABCD4 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0322 (Fisher's exact test), Q value = 0.18

Table S17211.  Gene #1634: 'ABCD4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ABCD4 MUTATED 3 0 0 1
ABCD4 WILD-TYPE 43 58 64 42

Figure S4359.  Get High-res Image Gene #1634: 'ABCD4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'ABCD4 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00289 (Fisher's exact test), Q value = 0.048

Table S17212.  Gene #1634: 'ABCD4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ABCD4 MUTATED 4 0 0
ABCD4 WILD-TYPE 47 83 77

Figure S4360.  Get High-res Image Gene #1634: 'ABCD4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'ABCD4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00085 (Fisher's exact test), Q value = 0.022

Table S17213.  Gene #1634: 'ABCD4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ABCD4 MUTATED 10 0 0 0
ABCD4 WILD-TYPE 168 183 101 20

Figure S4361.  Get High-res Image Gene #1634: 'ABCD4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ABCD4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0646 (Fisher's exact test), Q value = 0.28

Table S17214.  Gene #1634: 'ABCD4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ABCD4 MUTATED 1 0 5
ABCD4 WILD-TYPE 86 80 95
'ABCD4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.264 (Fisher's exact test), Q value = 0.59

Table S17215.  Gene #1634: 'ABCD4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ABCD4 MUTATED 2 1 4
ABCD4 WILD-TYPE 87 159 134
'ABCD4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S17216.  Gene #1634: 'ABCD4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ABCD4 MUTATED 4 2 1
ABCD4 WILD-TYPE 178 131 71
'ABCD4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.235 (Fisher's exact test), Q value = 0.56

Table S17217.  Gene #1634: 'ABCD4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ABCD4 MUTATED 0 3 3 4
ABCD4 WILD-TYPE 112 93 89 182
'ABCD4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00065 (Fisher's exact test), Q value = 0.018

Table S17218.  Gene #1634: 'ABCD4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ABCD4 MUTATED 0 0 5 1 0 0 4
ABCD4 WILD-TYPE 60 50 44 39 63 125 95

Figure S4362.  Get High-res Image Gene #1634: 'ABCD4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ABCD4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.601 (Fisher's exact test), Q value = 0.9

Table S17219.  Gene #1634: 'ABCD4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ABCD4 MUTATED 4 1 0 4
ABCD4 WILD-TYPE 126 77 68 192
'ABCD4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.042 (Fisher's exact test), Q value = 0.22

Table S17220.  Gene #1634: 'ABCD4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ABCD4 MUTATED 1 1 0 0 4 0 1 2 0
ABCD4 WILD-TYPE 39 61 28 80 65 48 42 26 74

Figure S4363.  Get High-res Image Gene #1634: 'ABCD4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'PCSK5 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0222 (Fisher's exact test), Q value = 0.15

Table S17221.  Gene #1635: 'PCSK5 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
PCSK5 MUTATED 2 0 0 3
PCSK5 WILD-TYPE 44 58 64 40

Figure S4364.  Get High-res Image Gene #1635: 'PCSK5 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'PCSK5 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0877 (Fisher's exact test), Q value = 0.32

Table S17222.  Gene #1635: 'PCSK5 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
PCSK5 MUTATED 3 2 0
PCSK5 WILD-TYPE 48 81 77
'PCSK5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0557 (Fisher's exact test), Q value = 0.26

Table S17223.  Gene #1635: 'PCSK5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
PCSK5 MUTATED 10 5 0 0
PCSK5 WILD-TYPE 168 178 101 20
'PCSK5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.764 (Fisher's exact test), Q value = 1

Table S17224.  Gene #1635: 'PCSK5 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
PCSK5 MUTATED 4 2 3
PCSK5 WILD-TYPE 83 78 97
'PCSK5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0248 (Fisher's exact test), Q value = 0.16

Table S17225.  Gene #1635: 'PCSK5 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
PCSK5 MUTATED 0 5 9
PCSK5 WILD-TYPE 89 155 129

Figure S4365.  Get High-res Image Gene #1635: 'PCSK5 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'PCSK5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.635 (Fisher's exact test), Q value = 0.93

Table S17226.  Gene #1635: 'PCSK5 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
PCSK5 MUTATED 8 5 1
PCSK5 WILD-TYPE 174 128 71
'PCSK5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.663 (Fisher's exact test), Q value = 0.95

Table S17227.  Gene #1635: 'PCSK5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
PCSK5 MUTATED 3 5 2 5
PCSK5 WILD-TYPE 109 91 90 181
'PCSK5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.233 (Fisher's exact test), Q value = 0.55

Table S17228.  Gene #1635: 'PCSK5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
PCSK5 MUTATED 2 1 3 1 1 1 6
PCSK5 WILD-TYPE 58 49 46 39 62 124 93
'PCSK5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.782 (Fisher's exact test), Q value = 1

Table S17229.  Gene #1635: 'PCSK5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
PCSK5 MUTATED 3 2 1 8
PCSK5 WILD-TYPE 127 76 67 188
'PCSK5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.146 (Fisher's exact test), Q value = 0.43

Table S17230.  Gene #1635: 'PCSK5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
PCSK5 MUTATED 2 1 2 1 5 1 1 1 0
PCSK5 WILD-TYPE 38 61 26 79 64 47 42 27 74
'PCSK5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.873 (Fisher's exact test), Q value = 1

Table S17231.  Gene #1635: 'PCSK5 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
PCSK5 MUTATED 1 1 0 1
PCSK5 WILD-TYPE 32 30 27 18
'PCSK5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.696 (Fisher's exact test), Q value = 0.97

Table S17232.  Gene #1635: 'PCSK5 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
PCSK5 MUTATED 1 0 1 1
PCSK5 WILD-TYPE 53 10 23 21
'DLGAP3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.023 (Fisher's exact test), Q value = 0.15

Table S17233.  Gene #1636: 'DLGAP3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
DLGAP3 MUTATED 2 0 0 3
DLGAP3 WILD-TYPE 44 58 64 40

Figure S4366.  Get High-res Image Gene #1636: 'DLGAP3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'DLGAP3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.737 (Fisher's exact test), Q value = 1

Table S17234.  Gene #1636: 'DLGAP3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
DLGAP3 MUTATED 2 2 1
DLGAP3 WILD-TYPE 49 81 76
'DLGAP3 MUTATION STATUS' versus 'CN_CNMF'

P value = 7e-05 (Fisher's exact test), Q value = 0.0041

Table S17235.  Gene #1636: 'DLGAP3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
DLGAP3 MUTATED 15 0 1 0
DLGAP3 WILD-TYPE 163 183 100 20

Figure S4367.  Get High-res Image Gene #1636: 'DLGAP3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'DLGAP3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0377 (Fisher's exact test), Q value = 0.2

Table S17236.  Gene #1636: 'DLGAP3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
DLGAP3 MUTATED 5 0 7
DLGAP3 WILD-TYPE 82 80 93

Figure S4368.  Get High-res Image Gene #1636: 'DLGAP3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'DLGAP3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0983 (Fisher's exact test), Q value = 0.34

Table S17237.  Gene #1636: 'DLGAP3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
DLGAP3 MUTATED 0 7 6
DLGAP3 WILD-TYPE 89 153 132
'DLGAP3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.202 (Fisher's exact test), Q value = 0.51

Table S17238.  Gene #1636: 'DLGAP3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
DLGAP3 MUTATED 7 6 0
DLGAP3 WILD-TYPE 175 127 72
'DLGAP3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0188 (Fisher's exact test), Q value = 0.14

Table S17239.  Gene #1636: 'DLGAP3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
DLGAP3 MUTATED 0 7 4 6
DLGAP3 WILD-TYPE 112 89 88 180

Figure S4369.  Get High-res Image Gene #1636: 'DLGAP3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'DLGAP3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 8e-05 (Fisher's exact test), Q value = 0.0045

Table S17240.  Gene #1636: 'DLGAP3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
DLGAP3 MUTATED 1 1 9 0 1 1 4
DLGAP3 WILD-TYPE 59 49 40 40 62 124 95

Figure S4370.  Get High-res Image Gene #1636: 'DLGAP3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'DLGAP3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.111 (Fisher's exact test), Q value = 0.37

Table S17241.  Gene #1636: 'DLGAP3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
DLGAP3 MUTATED 8 3 0 5
DLGAP3 WILD-TYPE 122 75 68 191
'DLGAP3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0287 (Fisher's exact test), Q value = 0.17

Table S17242.  Gene #1636: 'DLGAP3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
DLGAP3 MUTATED 2 4 1 1 7 0 0 0 1
DLGAP3 WILD-TYPE 38 58 27 79 62 48 43 28 73

Figure S4371.  Get High-res Image Gene #1636: 'DLGAP3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'DLGAP3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00457 (Fisher's exact test), Q value = 0.061

Table S17243.  Gene #1636: 'DLGAP3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
DLGAP3 MUTATED 0 0 0 3
DLGAP3 WILD-TYPE 33 31 27 16

Figure S4372.  Get High-res Image Gene #1636: 'DLGAP3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'DLGAP3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.448 (Fisher's exact test), Q value = 0.77

Table S17244.  Gene #1636: 'DLGAP3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
DLGAP3 MUTATED 1 0 2 0
DLGAP3 WILD-TYPE 53 10 22 22
'MFSD4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0937 (Fisher's exact test), Q value = 0.34

Table S17245.  Gene #1637: 'MFSD4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
MFSD4 MUTATED 5 0 1 0
MFSD4 WILD-TYPE 173 183 100 20
'MFSD4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.556 (Fisher's exact test), Q value = 0.87

Table S17246.  Gene #1637: 'MFSD4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
MFSD4 MUTATED 2 0 2
MFSD4 WILD-TYPE 85 80 98
'MFSD4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S17247.  Gene #1637: 'MFSD4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
MFSD4 MUTATED 1 3 2
MFSD4 WILD-TYPE 88 157 136
'MFSD4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.86 (Fisher's exact test), Q value = 1

Table S17248.  Gene #1637: 'MFSD4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
MFSD4 MUTATED 2 3 1
MFSD4 WILD-TYPE 180 130 71
'MFSD4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.889 (Fisher's exact test), Q value = 1

Table S17249.  Gene #1637: 'MFSD4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
MFSD4 MUTATED 1 2 1 2
MFSD4 WILD-TYPE 111 94 91 184
'MFSD4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.501 (Fisher's exact test), Q value = 0.83

Table S17250.  Gene #1637: 'MFSD4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
MFSD4 MUTATED 1 1 1 0 1 0 2
MFSD4 WILD-TYPE 59 49 48 40 62 125 97
'MFSD4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.605 (Fisher's exact test), Q value = 0.91

Table S17251.  Gene #1637: 'MFSD4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
MFSD4 MUTATED 1 2 0 3
MFSD4 WILD-TYPE 129 76 68 193
'MFSD4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.265 (Fisher's exact test), Q value = 0.59

Table S17252.  Gene #1637: 'MFSD4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
MFSD4 MUTATED 0 1 0 0 1 3 0 0 1
MFSD4 WILD-TYPE 40 61 28 80 68 45 43 28 73
'HECTD2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00407 (Fisher's exact test), Q value = 0.058

Table S17253.  Gene #1638: 'HECTD2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
HECTD2 MUTATED 3 0 0 4
HECTD2 WILD-TYPE 43 58 64 39

Figure S4373.  Get High-res Image Gene #1638: 'HECTD2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'HECTD2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.547 (Fisher's exact test), Q value = 0.87

Table S17254.  Gene #1638: 'HECTD2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
HECTD2 MUTATED 3 2 2
HECTD2 WILD-TYPE 48 81 75
'HECTD2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00016 (Fisher's exact test), Q value = 0.0072

Table S17255.  Gene #1638: 'HECTD2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
HECTD2 MUTATED 12 0 0 0
HECTD2 WILD-TYPE 166 183 101 20

Figure S4374.  Get High-res Image Gene #1638: 'HECTD2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'HECTD2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.329 (Fisher's exact test), Q value = 0.66

Table S17256.  Gene #1638: 'HECTD2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
HECTD2 MUTATED 3 0 2
HECTD2 WILD-TYPE 84 80 98
'HECTD2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.606 (Fisher's exact test), Q value = 0.91

Table S17257.  Gene #1638: 'HECTD2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
HECTD2 MUTATED 1 4 5
HECTD2 WILD-TYPE 88 156 133
'HECTD2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.328 (Fisher's exact test), Q value = 0.66

Table S17258.  Gene #1638: 'HECTD2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
HECTD2 MUTATED 5 5 0
HECTD2 WILD-TYPE 177 128 72
'HECTD2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.154 (Fisher's exact test), Q value = 0.44

Table S17259.  Gene #1638: 'HECTD2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
HECTD2 MUTATED 0 2 3 7
HECTD2 WILD-TYPE 112 94 89 179
'HECTD2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.474 (Fisher's exact test), Q value = 0.8

Table S17260.  Gene #1638: 'HECTD2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
HECTD2 MUTATED 1 1 2 1 1 1 5
HECTD2 WILD-TYPE 59 49 47 39 62 124 94
'HECTD2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.551 (Fisher's exact test), Q value = 0.87

Table S17261.  Gene #1638: 'HECTD2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
HECTD2 MUTATED 2 2 0 6
HECTD2 WILD-TYPE 128 76 68 190
'HECTD2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0434 (Fisher's exact test), Q value = 0.22

Table S17262.  Gene #1638: 'HECTD2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
HECTD2 MUTATED 1 3 3 1 2 0 0 0 0
HECTD2 WILD-TYPE 39 59 25 79 67 48 43 28 74

Figure S4375.  Get High-res Image Gene #1638: 'HECTD2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'CDH18 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0159 (Fisher's exact test), Q value = 0.13

Table S17263.  Gene #1639: 'CDH18 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
CDH18 MUTATED 6 3 0 3
CDH18 WILD-TYPE 40 55 64 40

Figure S4376.  Get High-res Image Gene #1639: 'CDH18 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'CDH18 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0386 (Fisher's exact test), Q value = 0.21

Table S17264.  Gene #1639: 'CDH18 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
CDH18 MUTATED 6 5 1
CDH18 WILD-TYPE 45 78 76

Figure S4377.  Get High-res Image Gene #1639: 'CDH18 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'CDH18 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0213 (Fisher's exact test), Q value = 0.15

Table S17265.  Gene #1639: 'CDH18 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
CDH18 MUTATED 22 7 7 1
CDH18 WILD-TYPE 156 176 94 19

Figure S4378.  Get High-res Image Gene #1639: 'CDH18 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'CDH18 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.171 (Fisher's exact test), Q value = 0.47

Table S17266.  Gene #1639: 'CDH18 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
CDH18 MUTATED 6 5 14
CDH18 WILD-TYPE 81 75 86
'CDH18 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.804 (Fisher's exact test), Q value = 1

Table S17267.  Gene #1639: 'CDH18 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
CDH18 MUTATED 5 13 11
CDH18 WILD-TYPE 84 147 127
'CDH18 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.602 (Fisher's exact test), Q value = 0.9

Table S17268.  Gene #1639: 'CDH18 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
CDH18 MUTATED 14 8 7
CDH18 WILD-TYPE 168 125 65
'CDH18 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.578 (Fisher's exact test), Q value = 0.88

Table S17269.  Gene #1639: 'CDH18 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
CDH18 MUTATED 9 10 7 11
CDH18 WILD-TYPE 103 86 85 175
'CDH18 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.174 (Fisher's exact test), Q value = 0.47

Table S17270.  Gene #1639: 'CDH18 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
CDH18 MUTATED 5 4 9 3 3 6 7
CDH18 WILD-TYPE 55 46 40 37 60 119 92
'CDH18 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.522 (Fisher's exact test), Q value = 0.84

Table S17271.  Gene #1639: 'CDH18 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
CDH18 MUTATED 13 6 5 11
CDH18 WILD-TYPE 117 72 63 185
'CDH18 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0999 (Fisher's exact test), Q value = 0.35

Table S17272.  Gene #1639: 'CDH18 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
CDH18 MUTATED 1 5 4 4 9 3 6 0 3
CDH18 WILD-TYPE 39 57 24 76 60 45 37 28 71
'CDH18 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.278 (Fisher's exact test), Q value = 0.61

Table S17273.  Gene #1639: 'CDH18 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
CDH18 MUTATED 4 1 1 3
CDH18 WILD-TYPE 29 30 26 16
'CDH18 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S17274.  Gene #1639: 'CDH18 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
CDH18 MUTATED 5 0 2 2
CDH18 WILD-TYPE 49 10 22 20
'SIX5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.177 (Fisher's exact test), Q value = 0.48

Table S17275.  Gene #1640: 'SIX5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
SIX5 MUTATED 4 0 1 0
SIX5 WILD-TYPE 174 183 100 20
'SIX5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.113 (Fisher's exact test), Q value = 0.37

Table S17276.  Gene #1640: 'SIX5 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
SIX5 MUTATED 0 0 3
SIX5 WILD-TYPE 87 80 97
'SIX5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.166 (Fisher's exact test), Q value = 0.46

Table S17277.  Gene #1640: 'SIX5 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
SIX5 MUTATED 1 0 3
SIX5 WILD-TYPE 88 160 135
'SIX5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.403 (Fisher's exact test), Q value = 0.73

Table S17278.  Gene #1640: 'SIX5 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
SIX5 MUTATED 3 0 1
SIX5 WILD-TYPE 179 133 71
'SIX5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.456 (Fisher's exact test), Q value = 0.78

Table S17279.  Gene #1640: 'SIX5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
SIX5 MUTATED 0 1 2 2
SIX5 WILD-TYPE 112 95 90 184
'SIX5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0212 (Fisher's exact test), Q value = 0.15

Table S17280.  Gene #1640: 'SIX5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
SIX5 MUTATED 0 0 3 0 0 0 2
SIX5 WILD-TYPE 60 50 46 40 63 125 97

Figure S4379.  Get High-res Image Gene #1640: 'SIX5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'SIX5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.506 (Fisher's exact test), Q value = 0.83

Table S17281.  Gene #1640: 'SIX5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
SIX5 MUTATED 3 0 0 2
SIX5 WILD-TYPE 127 78 68 194
'SIX5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.229 (Fisher's exact test), Q value = 0.55

Table S17282.  Gene #1640: 'SIX5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
SIX5 MUTATED 0 1 0 0 3 0 1 0 0
SIX5 WILD-TYPE 40 61 28 80 66 48 42 28 74
'C1ORF85 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0593 (Fisher's exact test), Q value = 0.27

Table S17283.  Gene #1641: 'C1ORF85 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
C1ORF85 MUTATED 7 1 0 0
C1ORF85 WILD-TYPE 171 182 101 20
'C1ORF85 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.633 (Fisher's exact test), Q value = 0.93

Table S17284.  Gene #1641: 'C1ORF85 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
C1ORF85 MUTATED 2 1 4
C1ORF85 WILD-TYPE 85 79 96
'C1ORF85 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0723 (Fisher's exact test), Q value = 0.29

Table S17285.  Gene #1641: 'C1ORF85 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
C1ORF85 MUTATED 0 2 6
C1ORF85 WILD-TYPE 89 158 132
'C1ORF85 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.565 (Fisher's exact test), Q value = 0.87

Table S17286.  Gene #1641: 'C1ORF85 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
C1ORF85 MUTATED 5 3 0
C1ORF85 WILD-TYPE 177 130 72
'C1ORF85 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0939 (Fisher's exact test), Q value = 0.34

Table S17287.  Gene #1641: 'C1ORF85 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
C1ORF85 MUTATED 1 2 4 1
C1ORF85 WILD-TYPE 111 94 88 185
'C1ORF85 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0111 (Fisher's exact test), Q value = 0.1

Table S17288.  Gene #1641: 'C1ORF85 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
C1ORF85 MUTATED 2 2 3 0 1 0 0
C1ORF85 WILD-TYPE 58 48 46 40 62 125 99

Figure S4380.  Get High-res Image Gene #1641: 'C1ORF85 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'C1ORF85 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.955 (Fisher's exact test), Q value = 1

Table S17289.  Gene #1641: 'C1ORF85 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
C1ORF85 MUTATED 3 1 1 3
C1ORF85 WILD-TYPE 127 77 67 193
'C1ORF85 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.813 (Fisher's exact test), Q value = 1

Table S17290.  Gene #1641: 'C1ORF85 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
C1ORF85 MUTATED 1 2 0 0 2 1 1 0 1
C1ORF85 WILD-TYPE 39 60 28 80 67 47 42 28 73
'C1ORF85 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0956 (Fisher's exact test), Q value = 0.34

Table S17291.  Gene #1641: 'C1ORF85 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
C1ORF85 MUTATED 2 0 0 2
C1ORF85 WILD-TYPE 31 31 27 17
'C1ORF85 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.766 (Fisher's exact test), Q value = 1

Table S17292.  Gene #1641: 'C1ORF85 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
C1ORF85 MUTATED 3 0 0 1
C1ORF85 WILD-TYPE 51 10 24 21
'NAE1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.405 (Fisher's exact test), Q value = 0.73

Table S17293.  Gene #1642: 'NAE1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
NAE1 MUTATED 1 0 1 2
NAE1 WILD-TYPE 45 58 63 41
'NAE1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.178 (Fisher's exact test), Q value = 0.48

Table S17294.  Gene #1642: 'NAE1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
NAE1 MUTATED 2 0 2
NAE1 WILD-TYPE 49 83 75
'NAE1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.424 (Fisher's exact test), Q value = 0.75

Table S17295.  Gene #1642: 'NAE1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
NAE1 MUTATED 4 5 0 0
NAE1 WILD-TYPE 174 178 101 20
'NAE1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0552 (Fisher's exact test), Q value = 0.26

Table S17296.  Gene #1642: 'NAE1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
NAE1 MUTATED 4 1 0
NAE1 WILD-TYPE 83 79 100
'NAE1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.313 (Fisher's exact test), Q value = 0.64

Table S17297.  Gene #1642: 'NAE1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
NAE1 MUTATED 0 4 4
NAE1 WILD-TYPE 89 156 134
'NAE1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.51 (Fisher's exact test), Q value = 0.83

Table S17298.  Gene #1642: 'NAE1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
NAE1 MUTATED 4 4 0
NAE1 WILD-TYPE 178 129 72
'NAE1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.422 (Fisher's exact test), Q value = 0.75

Table S17299.  Gene #1642: 'NAE1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
NAE1 MUTATED 2 0 3 4
NAE1 WILD-TYPE 110 96 89 182
'NAE1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.222 (Fisher's exact test), Q value = 0.54

Table S17300.  Gene #1642: 'NAE1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
NAE1 MUTATED 1 0 1 0 4 1 2
NAE1 WILD-TYPE 59 50 48 40 59 124 97
'NAE1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0912 (Fisher's exact test), Q value = 0.33

Table S17301.  Gene #1642: 'NAE1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
NAE1 MUTATED 2 4 0 2
NAE1 WILD-TYPE 128 74 68 194
'NAE1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.121 (Fisher's exact test), Q value = 0.39

Table S17302.  Gene #1642: 'NAE1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
NAE1 MUTATED 0 4 0 1 2 0 0 1 0
NAE1 WILD-TYPE 40 58 28 79 67 48 43 27 74
'CYP3A7 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.034 (Fisher's exact test), Q value = 0.19

Table S17303.  Gene #1643: 'CYP3A7 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
CYP3A7 MUTATED 2 1 0 4
CYP3A7 WILD-TYPE 44 57 64 39

Figure S4381.  Get High-res Image Gene #1643: 'CYP3A7 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'CYP3A7 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.546 (Fisher's exact test), Q value = 0.86

Table S17304.  Gene #1643: 'CYP3A7 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
CYP3A7 MUTATED 3 2 2
CYP3A7 WILD-TYPE 48 81 75
'CYP3A7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.223 (Fisher's exact test), Q value = 0.54

Table S17305.  Gene #1643: 'CYP3A7 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
CYP3A7 MUTATED 8 2 2 0
CYP3A7 WILD-TYPE 170 181 99 20
'CYP3A7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S17306.  Gene #1643: 'CYP3A7 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
CYP3A7 MUTATED 2 2 2
CYP3A7 WILD-TYPE 85 78 98
'CYP3A7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.777 (Fisher's exact test), Q value = 1

Table S17307.  Gene #1643: 'CYP3A7 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
CYP3A7 MUTATED 3 3 4
CYP3A7 WILD-TYPE 86 157 134
'CYP3A7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.696 (Fisher's exact test), Q value = 0.97

Table S17308.  Gene #1643: 'CYP3A7 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
CYP3A7 MUTATED 6 2 2
CYP3A7 WILD-TYPE 176 131 70
'CYP3A7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.762 (Fisher's exact test), Q value = 1

Table S17309.  Gene #1643: 'CYP3A7 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
CYP3A7 MUTATED 4 1 2 5
CYP3A7 WILD-TYPE 108 95 90 181
'CYP3A7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.729 (Fisher's exact test), Q value = 1

Table S17310.  Gene #1643: 'CYP3A7 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
CYP3A7 MUTATED 2 2 0 1 1 2 4
CYP3A7 WILD-TYPE 58 48 49 39 62 123 95
'CYP3A7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.541 (Fisher's exact test), Q value = 0.86

Table S17311.  Gene #1643: 'CYP3A7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
CYP3A7 MUTATED 4 1 0 6
CYP3A7 WILD-TYPE 126 77 68 190
'CYP3A7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.287 (Fisher's exact test), Q value = 0.62

Table S17312.  Gene #1643: 'CYP3A7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
CYP3A7 MUTATED 1 2 1 3 4 0 0 0 0
CYP3A7 WILD-TYPE 39 60 27 77 65 48 43 28 74
'DEFB129 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.273 (Fisher's exact test), Q value = 0.6

Table S17313.  Gene #1644: 'DEFB129 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
DEFB129 MUTATED 2 0 1 0
DEFB129 WILD-TYPE 44 58 63 43
'DEFB129 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.254 (Fisher's exact test), Q value = 0.58

Table S17314.  Gene #1644: 'DEFB129 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
DEFB129 MUTATED 2 1 0
DEFB129 WILD-TYPE 49 82 77
'DEFB129 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.385 (Fisher's exact test), Q value = 0.71

Table S17315.  Gene #1644: 'DEFB129 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
DEFB129 MUTATED 4 1 0 0
DEFB129 WILD-TYPE 174 182 101 20
'DEFB129 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.166 (Fisher's exact test), Q value = 0.46

Table S17316.  Gene #1644: 'DEFB129 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
DEFB129 MUTATED 1 0 3
DEFB129 WILD-TYPE 88 160 135
'DEFB129 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.136 (Fisher's exact test), Q value = 0.41

Table S17317.  Gene #1644: 'DEFB129 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
DEFB129 MUTATED 2 0 2
DEFB129 WILD-TYPE 180 133 70
'DEFB129 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.263 (Fisher's exact test), Q value = 0.59

Table S17318.  Gene #1644: 'DEFB129 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
DEFB129 MUTATED 0 0 2 3
DEFB129 WILD-TYPE 112 96 90 183
'DEFB129 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.781 (Fisher's exact test), Q value = 1

Table S17319.  Gene #1644: 'DEFB129 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
DEFB129 MUTATED 1 0 1 0 0 1 2
DEFB129 WILD-TYPE 59 50 48 40 63 124 97
'DEFB129 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.743 (Fisher's exact test), Q value = 1

Table S17320.  Gene #1644: 'DEFB129 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
DEFB129 MUTATED 2 0 1 2
DEFB129 WILD-TYPE 128 78 67 194
'DEFB129 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.792 (Fisher's exact test), Q value = 1

Table S17321.  Gene #1644: 'DEFB129 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
DEFB129 MUTATED 0 1 0 0 2 0 1 0 1
DEFB129 WILD-TYPE 40 61 28 80 67 48 42 28 73
'EFNB3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.487 (Fisher's exact test), Q value = 0.81

Table S17322.  Gene #1645: 'EFNB3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
EFNB3 MUTATED 1 0 2 0
EFNB3 WILD-TYPE 45 58 62 43
'EFNB3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.349 (Fisher's exact test), Q value = 0.68

Table S17323.  Gene #1645: 'EFNB3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
EFNB3 MUTATED 1 0 2
EFNB3 WILD-TYPE 50 83 75
'EFNB3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.232 (Fisher's exact test), Q value = 0.55

Table S17324.  Gene #1645: 'EFNB3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
EFNB3 MUTATED 6 1 2 0
EFNB3 WILD-TYPE 172 182 99 20
'EFNB3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.195 (Fisher's exact test), Q value = 0.5

Table S17325.  Gene #1645: 'EFNB3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
EFNB3 MUTATED 1 0 4
EFNB3 WILD-TYPE 86 80 96
'EFNB3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.795 (Fisher's exact test), Q value = 1

Table S17326.  Gene #1645: 'EFNB3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
EFNB3 MUTATED 1 4 2
EFNB3 WILD-TYPE 88 156 136
'EFNB3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.885 (Fisher's exact test), Q value = 1

Table S17327.  Gene #1645: 'EFNB3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
EFNB3 MUTATED 3 3 1
EFNB3 WILD-TYPE 179 130 71
'EFNB3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0614 (Fisher's exact test), Q value = 0.27

Table S17328.  Gene #1645: 'EFNB3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
EFNB3 MUTATED 1 5 0 3
EFNB3 WILD-TYPE 111 91 92 183
'EFNB3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.513 (Fisher's exact test), Q value = 0.83

Table S17329.  Gene #1645: 'EFNB3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
EFNB3 MUTATED 1 1 2 1 0 1 3
EFNB3 WILD-TYPE 59 49 47 39 63 124 96
'EFNB3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.675 (Fisher's exact test), Q value = 0.96

Table S17330.  Gene #1645: 'EFNB3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
EFNB3 MUTATED 3 0 1 5
EFNB3 WILD-TYPE 127 78 67 191
'EFNB3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.915 (Fisher's exact test), Q value = 1

Table S17331.  Gene #1645: 'EFNB3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
EFNB3 MUTATED 1 1 0 1 2 0 1 0 3
EFNB3 WILD-TYPE 39 61 28 79 67 48 42 28 71
'DYRK3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0983 (Fisher's exact test), Q value = 0.34

Table S17332.  Gene #1646: 'DYRK3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
DYRK3 MUTATED 2 1 0 3
DYRK3 WILD-TYPE 44 57 64 40
'DYRK3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0724 (Fisher's exact test), Q value = 0.29

Table S17333.  Gene #1646: 'DYRK3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
DYRK3 MUTATED 4 1 1
DYRK3 WILD-TYPE 47 82 76
'DYRK3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00022 (Fisher's exact test), Q value = 0.0088

Table S17334.  Gene #1646: 'DYRK3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
DYRK3 MUTATED 14 0 2 0
DYRK3 WILD-TYPE 164 183 99 20

Figure S4382.  Get High-res Image Gene #1646: 'DYRK3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'DYRK3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.437 (Fisher's exact test), Q value = 0.76

Table S17335.  Gene #1646: 'DYRK3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
DYRK3 MUTATED 3 1 5
DYRK3 WILD-TYPE 84 79 95
'DYRK3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.736 (Fisher's exact test), Q value = 1

Table S17336.  Gene #1646: 'DYRK3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
DYRK3 MUTATED 2 6 6
DYRK3 WILD-TYPE 87 154 132
'DYRK3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.361 (Fisher's exact test), Q value = 0.69

Table S17337.  Gene #1646: 'DYRK3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
DYRK3 MUTATED 6 7 1
DYRK3 WILD-TYPE 176 126 71
'DYRK3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.379 (Fisher's exact test), Q value = 0.71

Table S17338.  Gene #1646: 'DYRK3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
DYRK3 MUTATED 1 4 3 8
DYRK3 WILD-TYPE 111 92 89 178
'DYRK3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0378 (Fisher's exact test), Q value = 0.2

Table S17339.  Gene #1646: 'DYRK3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
DYRK3 MUTATED 1 2 4 0 1 1 7
DYRK3 WILD-TYPE 59 48 45 40 62 124 92

Figure S4383.  Get High-res Image Gene #1646: 'DYRK3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'DYRK3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.225 (Fisher's exact test), Q value = 0.54

Table S17340.  Gene #1646: 'DYRK3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
DYRK3 MUTATED 6 1 0 8
DYRK3 WILD-TYPE 124 77 68 188
'DYRK3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.425 (Fisher's exact test), Q value = 0.75

Table S17341.  Gene #1646: 'DYRK3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
DYRK3 MUTATED 1 2 2 1 4 0 1 2 2
DYRK3 WILD-TYPE 39 60 26 79 65 48 42 26 72
'ZBTB24 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00808 (Fisher's exact test), Q value = 0.084

Table S17342.  Gene #1647: 'ZBTB24 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ZBTB24 MUTATED 0 0 0 3
ZBTB24 WILD-TYPE 46 58 64 40

Figure S4384.  Get High-res Image Gene #1647: 'ZBTB24 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'ZBTB24 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S17343.  Gene #1647: 'ZBTB24 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ZBTB24 MUTATED 1 1 1
ZBTB24 WILD-TYPE 50 82 76
'ZBTB24 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.408 (Fisher's exact test), Q value = 0.73

Table S17344.  Gene #1647: 'ZBTB24 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ZBTB24 MUTATED 7 3 1 0
ZBTB24 WILD-TYPE 171 180 100 20
'ZBTB24 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S17345.  Gene #1647: 'ZBTB24 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ZBTB24 MUTATED 3 2 3
ZBTB24 WILD-TYPE 84 78 97
'ZBTB24 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S17346.  Gene #1647: 'ZBTB24 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ZBTB24 MUTATED 2 5 4
ZBTB24 WILD-TYPE 87 155 134
'ZBTB24 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.147 (Fisher's exact test), Q value = 0.43

Table S17347.  Gene #1647: 'ZBTB24 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ZBTB24 MUTATED 3 7 1
ZBTB24 WILD-TYPE 179 126 71
'ZBTB24 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.948 (Fisher's exact test), Q value = 1

Table S17348.  Gene #1647: 'ZBTB24 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ZBTB24 MUTATED 2 3 2 4
ZBTB24 WILD-TYPE 110 93 90 182
'ZBTB24 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0503 (Fisher's exact test), Q value = 0.24

Table S17349.  Gene #1647: 'ZBTB24 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ZBTB24 MUTATED 3 0 3 1 1 0 3
ZBTB24 WILD-TYPE 57 50 46 39 62 125 96
'ZBTB24 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.682 (Fisher's exact test), Q value = 0.96

Table S17350.  Gene #1647: 'ZBTB24 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ZBTB24 MUTATED 2 3 2 4
ZBTB24 WILD-TYPE 128 75 66 192
'ZBTB24 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0452 (Fisher's exact test), Q value = 0.23

Table S17351.  Gene #1647: 'ZBTB24 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ZBTB24 MUTATED 0 3 1 0 5 1 1 0 0
ZBTB24 WILD-TYPE 40 59 27 80 64 47 42 28 74

Figure S4385.  Get High-res Image Gene #1647: 'ZBTB24 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'ZBTB24 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S17352.  Gene #1647: 'ZBTB24 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
ZBTB24 MUTATED 2 1 1 1
ZBTB24 WILD-TYPE 31 30 26 18
'ZBTB24 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S17353.  Gene #1647: 'ZBTB24 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
ZBTB24 MUTATED 3 0 1 1
ZBTB24 WILD-TYPE 51 10 23 21
'TNRC6B MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.384 (Fisher's exact test), Q value = 0.71

Table S17354.  Gene #1648: 'TNRC6B MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
TNRC6B MUTATED 1 0 3 1
TNRC6B WILD-TYPE 45 58 61 42
'TNRC6B MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S17355.  Gene #1648: 'TNRC6B MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
TNRC6B MUTATED 1 2 2
TNRC6B WILD-TYPE 50 81 75
'TNRC6B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00023 (Fisher's exact test), Q value = 0.0091

Table S17356.  Gene #1648: 'TNRC6B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
TNRC6B MUTATED 16 3 1 3
TNRC6B WILD-TYPE 162 180 100 17

Figure S4386.  Get High-res Image Gene #1648: 'TNRC6B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'TNRC6B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.194 (Fisher's exact test), Q value = 0.5

Table S17357.  Gene #1648: 'TNRC6B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
TNRC6B MUTATED 5 2 9
TNRC6B WILD-TYPE 82 78 91
'TNRC6B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.754 (Fisher's exact test), Q value = 1

Table S17358.  Gene #1648: 'TNRC6B MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
TNRC6B MUTATED 3 8 8
TNRC6B WILD-TYPE 86 152 130
'TNRC6B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.906 (Fisher's exact test), Q value = 1

Table S17359.  Gene #1648: 'TNRC6B MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
TNRC6B MUTATED 9 6 4
TNRC6B WILD-TYPE 173 127 68
'TNRC6B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0631 (Fisher's exact test), Q value = 0.27

Table S17360.  Gene #1648: 'TNRC6B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
TNRC6B MUTATED 3 10 3 7
TNRC6B WILD-TYPE 109 86 89 179
'TNRC6B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0674 (Fisher's exact test), Q value = 0.28

Table S17361.  Gene #1648: 'TNRC6B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
TNRC6B MUTATED 2 4 7 1 2 3 4
TNRC6B WILD-TYPE 58 46 42 39 61 122 95
'TNRC6B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.804 (Fisher's exact test), Q value = 1

Table S17362.  Gene #1648: 'TNRC6B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
TNRC6B MUTATED 7 5 2 9
TNRC6B WILD-TYPE 123 73 66 187
'TNRC6B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0161 (Fisher's exact test), Q value = 0.13

Table S17363.  Gene #1648: 'TNRC6B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
TNRC6B MUTATED 3 3 1 0 8 2 0 0 6
TNRC6B WILD-TYPE 37 59 27 80 61 46 43 28 68

Figure S4387.  Get High-res Image Gene #1648: 'TNRC6B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'TNRC6B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.393 (Fisher's exact test), Q value = 0.72

Table S17364.  Gene #1648: 'TNRC6B MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
TNRC6B MUTATED 2 1 0 2
TNRC6B WILD-TYPE 31 30 27 17
'TNRC6B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S17365.  Gene #1648: 'TNRC6B MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
TNRC6B MUTATED 3 0 1 1
TNRC6B WILD-TYPE 51 10 23 21
'PAK1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0733 (Fisher's exact test), Q value = 0.29

Table S17366.  Gene #1649: 'PAK1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
PAK1 MUTATED 2 0 0 2
PAK1 WILD-TYPE 44 58 64 41
'PAK1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S17367.  Gene #1649: 'PAK1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
PAK1 MUTATED 1 2 1
PAK1 WILD-TYPE 50 81 76
'PAK1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00279 (Fisher's exact test), Q value = 0.047

Table S17368.  Gene #1649: 'PAK1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
PAK1 MUTATED 9 0 1 1
PAK1 WILD-TYPE 169 183 100 19

Figure S4388.  Get High-res Image Gene #1649: 'PAK1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'PAK1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.288 (Fisher's exact test), Q value = 0.62

Table S17369.  Gene #1649: 'PAK1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
PAK1 MUTATED 3 0 3
PAK1 WILD-TYPE 84 80 97
'PAK1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.082 (Fisher's exact test), Q value = 0.31

Table S17370.  Gene #1649: 'PAK1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
PAK1 MUTATED 1 1 6
PAK1 WILD-TYPE 88 159 132
'PAK1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S17371.  Gene #1649: 'PAK1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
PAK1 MUTATED 4 3 1
PAK1 WILD-TYPE 178 130 71
'PAK1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.678 (Fisher's exact test), Q value = 0.96

Table S17372.  Gene #1649: 'PAK1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
PAK1 MUTATED 1 3 2 5
PAK1 WILD-TYPE 111 93 90 181
'PAK1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.649 (Fisher's exact test), Q value = 0.94

Table S17373.  Gene #1649: 'PAK1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
PAK1 MUTATED 1 1 2 1 1 1 4
PAK1 WILD-TYPE 59 49 47 39 62 124 95
'PAK1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.476 (Fisher's exact test), Q value = 0.8

Table S17374.  Gene #1649: 'PAK1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
PAK1 MUTATED 3 1 0 7
PAK1 WILD-TYPE 127 77 68 189
'PAK1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.655 (Fisher's exact test), Q value = 0.94

Table S17375.  Gene #1649: 'PAK1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
PAK1 MUTATED 1 1 2 2 3 0 1 0 1
PAK1 WILD-TYPE 39 61 26 78 66 48 42 28 73
'PODXL MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.018 (Fisher's exact test), Q value = 0.13

Table S17376.  Gene #1650: 'PODXL MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
PODXL MUTATED 3 0 0 0
PODXL WILD-TYPE 43 58 64 43

Figure S4389.  Get High-res Image Gene #1650: 'PODXL MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'PODXL MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0144 (Fisher's exact test), Q value = 0.12

Table S17377.  Gene #1650: 'PODXL MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
PODXL MUTATED 3 0 0
PODXL WILD-TYPE 48 83 77

Figure S4390.  Get High-res Image Gene #1650: 'PODXL MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'PODXL MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00388 (Fisher's exact test), Q value = 0.057

Table S17378.  Gene #1650: 'PODXL MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
PODXL MUTATED 6 0 2 2
PODXL WILD-TYPE 172 183 99 18

Figure S4391.  Get High-res Image Gene #1650: 'PODXL MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'PODXL MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.633 (Fisher's exact test), Q value = 0.93

Table S17379.  Gene #1650: 'PODXL MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
PODXL MUTATED 2 1 4
PODXL WILD-TYPE 85 79 96
'PODXL MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.434 (Fisher's exact test), Q value = 0.76

Table S17380.  Gene #1650: 'PODXL MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
PODXL MUTATED 0 4 3
PODXL WILD-TYPE 89 156 135
'PODXL MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.119 (Fisher's exact test), Q value = 0.38

Table S17381.  Gene #1650: 'PODXL MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
PODXL MUTATED 1 5 1
PODXL WILD-TYPE 181 128 71
'PODXL MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.783 (Fisher's exact test), Q value = 1

Table S17382.  Gene #1650: 'PODXL MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
PODXL MUTATED 2 2 3 3
PODXL WILD-TYPE 110 94 89 183
'PODXL MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.26 (Fisher's exact test), Q value = 0.58

Table S17383.  Gene #1650: 'PODXL MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
PODXL MUTATED 2 1 2 1 1 0 3
PODXL WILD-TYPE 58 49 47 39 62 125 96
'PODXL MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.702 (Fisher's exact test), Q value = 0.97

Table S17384.  Gene #1650: 'PODXL MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
PODXL MUTATED 3 2 0 5
PODXL WILD-TYPE 127 76 68 191
'PODXL MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.681 (Fisher's exact test), Q value = 0.96

Table S17385.  Gene #1650: 'PODXL MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
PODXL MUTATED 0 0 0 3 3 1 1 1 1
PODXL WILD-TYPE 40 62 28 77 66 47 42 27 73
'OR5AK2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.121 (Fisher's exact test), Q value = 0.39

Table S17386.  Gene #1651: 'OR5AK2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
OR5AK2 MUTATED 2 0 0 1
OR5AK2 WILD-TYPE 44 58 64 42
'OR5AK2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.253 (Fisher's exact test), Q value = 0.58

Table S17387.  Gene #1651: 'OR5AK2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
OR5AK2 MUTATED 2 1 0
OR5AK2 WILD-TYPE 49 82 77
'OR5AK2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.748 (Fisher's exact test), Q value = 1

Table S17388.  Gene #1651: 'OR5AK2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
OR5AK2 MUTATED 5 3 1 0
OR5AK2 WILD-TYPE 173 180 100 20
'OR5AK2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S17389.  Gene #1651: 'OR5AK2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
OR5AK2 MUTATED 2 2 2
OR5AK2 WILD-TYPE 85 78 98
'OR5AK2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.732 (Fisher's exact test), Q value = 1

Table S17390.  Gene #1651: 'OR5AK2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
OR5AK2 MUTATED 1 3 4
OR5AK2 WILD-TYPE 88 157 134
'OR5AK2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.808 (Fisher's exact test), Q value = 1

Table S17391.  Gene #1651: 'OR5AK2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
OR5AK2 MUTATED 4 2 2
OR5AK2 WILD-TYPE 178 131 70
'OR5AK2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.714 (Fisher's exact test), Q value = 0.98

Table S17392.  Gene #1651: 'OR5AK2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
OR5AK2 MUTATED 2 1 3 3
OR5AK2 WILD-TYPE 110 95 89 183
'OR5AK2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.038 (Fisher's exact test), Q value = 0.2

Table S17393.  Gene #1651: 'OR5AK2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
OR5AK2 MUTATED 1 2 3 0 0 0 3
OR5AK2 WILD-TYPE 59 48 46 40 63 125 96

Figure S4392.  Get High-res Image Gene #1651: 'OR5AK2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'OR5AK2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.807 (Fisher's exact test), Q value = 1

Table S17394.  Gene #1651: 'OR5AK2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
OR5AK2 MUTATED 4 1 1 3
OR5AK2 WILD-TYPE 126 77 67 193
'OR5AK2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0411 (Fisher's exact test), Q value = 0.21

Table S17395.  Gene #1651: 'OR5AK2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
OR5AK2 MUTATED 0 1 3 1 2 0 2 0 0
OR5AK2 WILD-TYPE 40 61 25 79 67 48 41 28 74

Figure S4393.  Get High-res Image Gene #1651: 'OR5AK2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'OR5AK2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.146 (Fisher's exact test), Q value = 0.43

Table S17396.  Gene #1651: 'OR5AK2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
OR5AK2 MUTATED 3 0 0 1
OR5AK2 WILD-TYPE 30 31 27 18
'OR5AK2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S17397.  Gene #1651: 'OR5AK2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
OR5AK2 MUTATED 2 0 1 1
OR5AK2 WILD-TYPE 52 10 23 21
'LGALS9 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.388 (Fisher's exact test), Q value = 0.71

Table S17398.  Gene #1652: 'LGALS9 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
LGALS9 MUTATED 4 1 0 0
LGALS9 WILD-TYPE 174 182 101 20
'LGALS9 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.778 (Fisher's exact test), Q value = 1

Table S17399.  Gene #1652: 'LGALS9 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
LGALS9 MUTATED 1 0 2
LGALS9 WILD-TYPE 86 80 98
'LGALS9 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S17400.  Gene #1652: 'LGALS9 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
LGALS9 MUTATED 1 2 2
LGALS9 WILD-TYPE 88 158 136
'LGALS9 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.342 (Fisher's exact test), Q value = 0.67

Table S17401.  Gene #1652: 'LGALS9 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
LGALS9 MUTATED 1 3 1
LGALS9 WILD-TYPE 181 130 71
'LGALS9 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.49 (Fisher's exact test), Q value = 0.82

Table S17402.  Gene #1652: 'LGALS9 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
LGALS9 MUTATED 0 2 1 2
LGALS9 WILD-TYPE 112 94 91 184
'LGALS9 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0852 (Fisher's exact test), Q value = 0.32

Table S17403.  Gene #1652: 'LGALS9 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
LGALS9 MUTATED 0 0 3 0 0 1 1
LGALS9 WILD-TYPE 60 50 46 40 63 124 98
'LGALS9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.931 (Fisher's exact test), Q value = 1

Table S17404.  Gene #1652: 'LGALS9 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
LGALS9 MUTATED 1 1 0 3
LGALS9 WILD-TYPE 129 77 68 193
'LGALS9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.684 (Fisher's exact test), Q value = 0.96

Table S17405.  Gene #1652: 'LGALS9 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
LGALS9 MUTATED 1 1 0 1 1 0 0 1 0
LGALS9 WILD-TYPE 39 61 28 79 68 48 43 27 74
'IRGQ MUTATION STATUS' versus 'CN_CNMF'

P value = 0.384 (Fisher's exact test), Q value = 0.71

Table S17406.  Gene #1653: 'IRGQ MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
IRGQ MUTATED 4 1 0 0
IRGQ WILD-TYPE 174 182 101 20
'IRGQ MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.391 (Fisher's exact test), Q value = 0.72

Table S17407.  Gene #1653: 'IRGQ MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
IRGQ MUTATED 1 0 3
IRGQ WILD-TYPE 86 80 97
'IRGQ MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.138 (Fisher's exact test), Q value = 0.41

Table S17408.  Gene #1653: 'IRGQ MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
IRGQ MUTATED 0 1 4
IRGQ WILD-TYPE 89 159 134
'IRGQ MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.717 (Fisher's exact test), Q value = 0.99

Table S17409.  Gene #1653: 'IRGQ MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
IRGQ MUTATED 3 2 0
IRGQ WILD-TYPE 179 131 72
'IRGQ MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.602 (Fisher's exact test), Q value = 0.9

Table S17410.  Gene #1653: 'IRGQ MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
IRGQ MUTATED 1 2 1 1
IRGQ WILD-TYPE 111 94 91 185
'IRGQ MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0289 (Fisher's exact test), Q value = 0.17

Table S17411.  Gene #1653: 'IRGQ MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
IRGQ MUTATED 1 0 3 0 0 0 1
IRGQ WILD-TYPE 59 50 46 40 63 125 98

Figure S4394.  Get High-res Image Gene #1653: 'IRGQ MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'IRGQ MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.587 (Fisher's exact test), Q value = 0.89

Table S17412.  Gene #1653: 'IRGQ MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
IRGQ MUTATED 1 0 0 4
IRGQ WILD-TYPE 129 78 68 192
'IRGQ MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0856 (Fisher's exact test), Q value = 0.32

Table S17413.  Gene #1653: 'IRGQ MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
IRGQ MUTATED 0 0 0 0 3 1 0 1 0
IRGQ WILD-TYPE 40 62 28 80 66 47 43 27 74
'NLRP1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.126 (Fisher's exact test), Q value = 0.4

Table S17414.  Gene #1654: 'NLRP1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
NLRP1 MUTATED 3 2 1 5
NLRP1 WILD-TYPE 43 56 63 38
'NLRP1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.276 (Fisher's exact test), Q value = 0.6

Table S17415.  Gene #1654: 'NLRP1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
NLRP1 MUTATED 5 3 3
NLRP1 WILD-TYPE 46 80 74
'NLRP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00505 (Fisher's exact test), Q value = 0.064

Table S17416.  Gene #1654: 'NLRP1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
NLRP1 MUTATED 19 4 5 0
NLRP1 WILD-TYPE 159 179 96 20

Figure S4395.  Get High-res Image Gene #1654: 'NLRP1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'NLRP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.38 (Fisher's exact test), Q value = 0.71

Table S17417.  Gene #1654: 'NLRP1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
NLRP1 MUTATED 5 3 9
NLRP1 WILD-TYPE 82 77 91
'NLRP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.706 (Fisher's exact test), Q value = 0.98

Table S17418.  Gene #1654: 'NLRP1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
NLRP1 MUTATED 4 9 10
NLRP1 WILD-TYPE 85 151 128
'NLRP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.434 (Fisher's exact test), Q value = 0.76

Table S17419.  Gene #1654: 'NLRP1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
NLRP1 MUTATED 11 10 2
NLRP1 WILD-TYPE 171 123 70
'NLRP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.776 (Fisher's exact test), Q value = 1

Table S17420.  Gene #1654: 'NLRP1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
NLRP1 MUTATED 5 6 7 10
NLRP1 WILD-TYPE 107 90 85 176
'NLRP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.11 (Fisher's exact test), Q value = 0.37

Table S17421.  Gene #1654: 'NLRP1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
NLRP1 MUTATED 2 6 4 1 3 3 9
NLRP1 WILD-TYPE 58 44 45 39 60 122 90
'NLRP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.211 (Fisher's exact test), Q value = 0.52

Table S17422.  Gene #1654: 'NLRP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
NLRP1 MUTATED 11 3 1 12
NLRP1 WILD-TYPE 119 75 67 184
'NLRP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.954 (Fisher's exact test), Q value = 1

Table S17423.  Gene #1654: 'NLRP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
NLRP1 MUTATED 1 4 3 5 5 2 2 1 4
NLRP1 WILD-TYPE 39 58 25 75 64 46 41 27 70
'NLRP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.106 (Fisher's exact test), Q value = 0.36

Table S17424.  Gene #1654: 'NLRP1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
NLRP1 MUTATED 1 2 0 3
NLRP1 WILD-TYPE 32 29 27 16
'NLRP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.602 (Fisher's exact test), Q value = 0.9

Table S17425.  Gene #1654: 'NLRP1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
NLRP1 MUTATED 2 1 1 2
NLRP1 WILD-TYPE 52 9 23 20
'TPR MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00444 (Fisher's exact test), Q value = 0.061

Table S17426.  Gene #1655: 'TPR MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
TPR MUTATED 5 0 1 5
TPR WILD-TYPE 41 58 63 38

Figure S4396.  Get High-res Image Gene #1655: 'TPR MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'TPR MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00976 (Fisher's exact test), Q value = 0.094

Table S17427.  Gene #1655: 'TPR MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
TPR MUTATED 7 3 1
TPR WILD-TYPE 44 80 76

Figure S4397.  Get High-res Image Gene #1655: 'TPR MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'TPR MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0532 (Fisher's exact test), Q value = 0.25

Table S17428.  Gene #1655: 'TPR MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
TPR MUTATED 15 4 5 1
TPR WILD-TYPE 163 179 96 19
'TPR MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.401 (Fisher's exact test), Q value = 0.73

Table S17429.  Gene #1655: 'TPR MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
TPR MUTATED 4 2 7
TPR WILD-TYPE 83 78 93
'TPR MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.554 (Fisher's exact test), Q value = 0.87

Table S17430.  Gene #1655: 'TPR MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
TPR MUTATED 3 10 5
TPR WILD-TYPE 86 150 133
'TPR MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.24 (Fisher's exact test), Q value = 0.56

Table S17431.  Gene #1655: 'TPR MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
TPR MUTATED 6 6 6
TPR WILD-TYPE 176 127 66
'TPR MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.213 (Fisher's exact test), Q value = 0.52

Table S17432.  Gene #1655: 'TPR MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
TPR MUTATED 2 6 4 13
TPR WILD-TYPE 110 90 88 173
'TPR MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0162 (Fisher's exact test), Q value = 0.13

Table S17433.  Gene #1655: 'TPR MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
TPR MUTATED 3 2 6 0 1 3 10
TPR WILD-TYPE 57 48 43 40 62 122 89

Figure S4398.  Get High-res Image Gene #1655: 'TPR MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'TPR MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0989 (Fisher's exact test), Q value = 0.35

Table S17434.  Gene #1655: 'TPR MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
TPR MUTATED 7 3 0 14
TPR WILD-TYPE 123 75 68 182
'TPR MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00727 (Fisher's exact test), Q value = 0.079

Table S17435.  Gene #1655: 'TPR MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
TPR MUTATED 1 4 1 4 11 0 0 0 3
TPR WILD-TYPE 39 58 27 76 58 48 43 28 71

Figure S4399.  Get High-res Image Gene #1655: 'TPR MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'TPR MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.146 (Fisher's exact test), Q value = 0.43

Table S17436.  Gene #1655: 'TPR MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
TPR MUTATED 3 0 0 1
TPR WILD-TYPE 30 31 27 18
'TPR MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.868 (Fisher's exact test), Q value = 1

Table S17437.  Gene #1655: 'TPR MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
TPR MUTATED 3 0 1 0
TPR WILD-TYPE 51 10 23 22
'METT5D1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.374 (Fisher's exact test), Q value = 0.7

Table S17438.  Gene #1656: 'METT5D1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
METT5D1 MUTATED 3 1 3 0
METT5D1 WILD-TYPE 175 182 98 20
'METT5D1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.382 (Fisher's exact test), Q value = 0.71

Table S17439.  Gene #1656: 'METT5D1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
METT5D1 MUTATED 1 1 4
METT5D1 WILD-TYPE 86 79 96
'METT5D1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.375 (Fisher's exact test), Q value = 0.7

Table S17440.  Gene #1656: 'METT5D1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
METT5D1 MUTATED 0 2 3
METT5D1 WILD-TYPE 89 158 135
'METT5D1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.506 (Fisher's exact test), Q value = 0.83

Table S17441.  Gene #1656: 'METT5D1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
METT5D1 MUTATED 4 1 0
METT5D1 WILD-TYPE 178 132 72
'METT5D1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.121 (Fisher's exact test), Q value = 0.39

Table S17442.  Gene #1656: 'METT5D1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
METT5D1 MUTATED 1 4 1 1
METT5D1 WILD-TYPE 111 92 91 185
'METT5D1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0464 (Fisher's exact test), Q value = 0.23

Table S17443.  Gene #1656: 'METT5D1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
METT5D1 MUTATED 1 1 3 1 0 0 1
METT5D1 WILD-TYPE 59 49 46 39 63 125 98

Figure S4400.  Get High-res Image Gene #1656: 'METT5D1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'METT5D1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.296 (Fisher's exact test), Q value = 0.63

Table S17444.  Gene #1656: 'METT5D1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
METT5D1 MUTATED 3 1 2 1
METT5D1 WILD-TYPE 127 77 66 195
'METT5D1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.389 (Fisher's exact test), Q value = 0.72

Table S17445.  Gene #1656: 'METT5D1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
METT5D1 MUTATED 1 1 0 0 3 1 1 0 0
METT5D1 WILD-TYPE 39 61 28 80 66 47 42 28 74
'METT5D1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.389 (Fisher's exact test), Q value = 0.72

Table S17446.  Gene #1656: 'METT5D1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
METT5D1 MUTATED 2 0 2 0
METT5D1 WILD-TYPE 31 31 25 19
'METT5D1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.267 (Fisher's exact test), Q value = 0.59

Table S17447.  Gene #1656: 'METT5D1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
METT5D1 MUTATED 1 1 1 1
METT5D1 WILD-TYPE 53 9 23 21
'BCAP29 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0646 (Fisher's exact test), Q value = 0.28

Table S17448.  Gene #1657: 'BCAP29 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
BCAP29 MUTATED 6 0 2 0
BCAP29 WILD-TYPE 172 183 99 20
'BCAP29 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.126 (Fisher's exact test), Q value = 0.39

Table S17449.  Gene #1657: 'BCAP29 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
BCAP29 MUTATED 2 0 5
BCAP29 WILD-TYPE 85 80 95
'BCAP29 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.546 (Fisher's exact test), Q value = 0.86

Table S17450.  Gene #1657: 'BCAP29 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
BCAP29 MUTATED 1 1 3
BCAP29 WILD-TYPE 88 159 135
'BCAP29 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.854 (Fisher's exact test), Q value = 1

Table S17451.  Gene #1657: 'BCAP29 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
BCAP29 MUTATED 3 1 1
BCAP29 WILD-TYPE 179 132 71
'BCAP29 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0178 (Fisher's exact test), Q value = 0.13

Table S17452.  Gene #1657: 'BCAP29 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
BCAP29 MUTATED 0 3 4 1
BCAP29 WILD-TYPE 112 93 88 185

Figure S4401.  Get High-res Image Gene #1657: 'BCAP29 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'BCAP29 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0542 (Fisher's exact test), Q value = 0.25

Table S17453.  Gene #1657: 'BCAP29 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
BCAP29 MUTATED 1 0 3 1 2 0 1
BCAP29 WILD-TYPE 59 50 46 39 61 125 98
'BCAP29 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0696 (Fisher's exact test), Q value = 0.28

Table S17454.  Gene #1657: 'BCAP29 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
BCAP29 MUTATED 5 2 0 1
BCAP29 WILD-TYPE 125 76 68 195
'BCAP29 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.435 (Fisher's exact test), Q value = 0.76

Table S17455.  Gene #1657: 'BCAP29 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
BCAP29 MUTATED 1 3 1 1 1 0 1 0 0
BCAP29 WILD-TYPE 39 59 27 79 68 48 42 28 74
'MSH5 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.257 (Fisher's exact test), Q value = 0.58

Table S17456.  Gene #1658: 'MSH5 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
MSH5 MUTATED 2 0 1 2
MSH5 WILD-TYPE 44 58 63 41
'MSH5 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.637 (Fisher's exact test), Q value = 0.93

Table S17457.  Gene #1658: 'MSH5 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
MSH5 MUTATED 2 1 2
MSH5 WILD-TYPE 49 82 75
'MSH5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.207 (Fisher's exact test), Q value = 0.51

Table S17458.  Gene #1658: 'MSH5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
MSH5 MUTATED 6 1 1 0
MSH5 WILD-TYPE 172 182 100 20
'MSH5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.778 (Fisher's exact test), Q value = 1

Table S17459.  Gene #1658: 'MSH5 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
MSH5 MUTATED 1 0 2
MSH5 WILD-TYPE 86 80 98
'MSH5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.105 (Fisher's exact test), Q value = 0.36

Table S17460.  Gene #1658: 'MSH5 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
MSH5 MUTATED 2 0 3
MSH5 WILD-TYPE 87 160 135
'MSH5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.423 (Fisher's exact test), Q value = 0.75

Table S17461.  Gene #1658: 'MSH5 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
MSH5 MUTATED 2 1 2
MSH5 WILD-TYPE 180 132 70
'MSH5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.346 (Fisher's exact test), Q value = 0.67

Table S17462.  Gene #1658: 'MSH5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
MSH5 MUTATED 0 2 1 5
MSH5 WILD-TYPE 112 94 91 181
'MSH5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.264 (Fisher's exact test), Q value = 0.59

Table S17463.  Gene #1658: 'MSH5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
MSH5 MUTATED 0 0 2 0 1 1 4
MSH5 WILD-TYPE 60 50 47 40 62 124 95
'MSH5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.286 (Fisher's exact test), Q value = 0.61

Table S17464.  Gene #1658: 'MSH5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
MSH5 MUTATED 2 0 0 6
MSH5 WILD-TYPE 128 78 68 190
'MSH5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.232 (Fisher's exact test), Q value = 0.55

Table S17465.  Gene #1658: 'MSH5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
MSH5 MUTATED 0 0 1 3 3 0 1 0 0
MSH5 WILD-TYPE 40 62 27 77 66 48 42 28 74
'BTBD11 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0131 (Fisher's exact test), Q value = 0.11

Table S17466.  Gene #1659: 'BTBD11 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
BTBD11 MUTATED 5 1 0 3
BTBD11 WILD-TYPE 41 57 64 40

Figure S4402.  Get High-res Image Gene #1659: 'BTBD11 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'BTBD11 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0163 (Fisher's exact test), Q value = 0.13

Table S17467.  Gene #1659: 'BTBD11 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
BTBD11 MUTATED 6 2 1
BTBD11 WILD-TYPE 45 81 76

Figure S4403.  Get High-res Image Gene #1659: 'BTBD11 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'BTBD11 MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S17468.  Gene #1659: 'BTBD11 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
BTBD11 MUTATED 20 2 0 1
BTBD11 WILD-TYPE 158 181 101 19

Figure S4404.  Get High-res Image Gene #1659: 'BTBD11 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'BTBD11 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.108 (Fisher's exact test), Q value = 0.36

Table S17469.  Gene #1659: 'BTBD11 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
BTBD11 MUTATED 7 1 6
BTBD11 WILD-TYPE 80 79 94
'BTBD11 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.679 (Fisher's exact test), Q value = 0.96

Table S17470.  Gene #1659: 'BTBD11 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
BTBD11 MUTATED 3 7 8
BTBD11 WILD-TYPE 86 153 130
'BTBD11 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.901 (Fisher's exact test), Q value = 1

Table S17471.  Gene #1659: 'BTBD11 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
BTBD11 MUTATED 8 6 4
BTBD11 WILD-TYPE 174 127 68
'BTBD11 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.268 (Fisher's exact test), Q value = 0.59

Table S17472.  Gene #1659: 'BTBD11 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
BTBD11 MUTATED 2 7 5 9
BTBD11 WILD-TYPE 110 89 87 177
'BTBD11 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0142 (Fisher's exact test), Q value = 0.12

Table S17473.  Gene #1659: 'BTBD11 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
BTBD11 MUTATED 2 2 7 1 1 2 8
BTBD11 WILD-TYPE 58 48 42 39 62 123 91

Figure S4405.  Get High-res Image Gene #1659: 'BTBD11 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'BTBD11 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.39 (Fisher's exact test), Q value = 0.72

Table S17474.  Gene #1659: 'BTBD11 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
BTBD11 MUTATED 5 4 1 13
BTBD11 WILD-TYPE 125 74 67 183
'BTBD11 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0386 (Fisher's exact test), Q value = 0.21

Table S17475.  Gene #1659: 'BTBD11 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
BTBD11 MUTATED 1 5 2 2 9 0 1 0 3
BTBD11 WILD-TYPE 39 57 26 78 60 48 42 28 71

Figure S4406.  Get High-res Image Gene #1659: 'BTBD11 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'BTBD11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0236 (Fisher's exact test), Q value = 0.16

Table S17476.  Gene #1659: 'BTBD11 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
BTBD11 MUTATED 1 0 0 3
BTBD11 WILD-TYPE 32 31 27 16

Figure S4407.  Get High-res Image Gene #1659: 'BTBD11 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'BTBD11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.432 (Fisher's exact test), Q value = 0.76

Table S17477.  Gene #1659: 'BTBD11 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
BTBD11 MUTATED 4 0 0 0
BTBD11 WILD-TYPE 50 10 24 22
'ATAD1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0232 (Fisher's exact test), Q value = 0.15

Table S17478.  Gene #1660: 'ATAD1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ATAD1 MUTATED 8 1 0 0
ATAD1 WILD-TYPE 170 182 101 20

Figure S4408.  Get High-res Image Gene #1660: 'ATAD1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ATAD1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.18 (Fisher's exact test), Q value = 0.48

Table S17479.  Gene #1660: 'ATAD1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ATAD1 MUTATED 4 0 3
ATAD1 WILD-TYPE 83 80 97
'ATAD1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.176 (Fisher's exact test), Q value = 0.48

Table S17480.  Gene #1660: 'ATAD1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ATAD1 MUTATED 0 3 5
ATAD1 WILD-TYPE 89 157 133
'ATAD1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.638 (Fisher's exact test), Q value = 0.93

Table S17481.  Gene #1660: 'ATAD1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ATAD1 MUTATED 3 4 1
ATAD1 WILD-TYPE 179 129 71
'ATAD1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.393 (Fisher's exact test), Q value = 0.72

Table S17482.  Gene #1660: 'ATAD1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ATAD1 MUTATED 1 3 3 2
ATAD1 WILD-TYPE 111 93 89 184
'ATAD1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0695 (Fisher's exact test), Q value = 0.28

Table S17483.  Gene #1660: 'ATAD1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ATAD1 MUTATED 1 2 3 1 1 0 1
ATAD1 WILD-TYPE 59 48 46 39 62 125 98
'ATAD1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.756 (Fisher's exact test), Q value = 1

Table S17484.  Gene #1660: 'ATAD1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ATAD1 MUTATED 3 2 0 4
ATAD1 WILD-TYPE 127 76 68 192
'ATAD1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.579 (Fisher's exact test), Q value = 0.88

Table S17485.  Gene #1660: 'ATAD1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ATAD1 MUTATED 1 3 0 1 3 0 0 0 1
ATAD1 WILD-TYPE 39 59 28 79 66 48 43 28 73
'PRPF4B MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.402 (Fisher's exact test), Q value = 0.73

Table S17486.  Gene #1661: 'PRPF4B MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
PRPF4B MUTATED 1 0 1 2
PRPF4B WILD-TYPE 45 58 63 41
'PRPF4B MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S17487.  Gene #1661: 'PRPF4B MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
PRPF4B MUTATED 1 2 1
PRPF4B WILD-TYPE 50 81 76
'PRPF4B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.103 (Fisher's exact test), Q value = 0.35

Table S17488.  Gene #1661: 'PRPF4B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
PRPF4B MUTATED 11 3 2 0
PRPF4B WILD-TYPE 167 180 99 20
'PRPF4B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.936 (Fisher's exact test), Q value = 1

Table S17489.  Gene #1661: 'PRPF4B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
PRPF4B MUTATED 4 3 5
PRPF4B WILD-TYPE 83 77 95
'PRPF4B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.421 (Fisher's exact test), Q value = 0.75

Table S17490.  Gene #1661: 'PRPF4B MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
PRPF4B MUTATED 1 5 6
PRPF4B WILD-TYPE 88 155 132
'PRPF4B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S17491.  Gene #1661: 'PRPF4B MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
PRPF4B MUTATED 6 4 2
PRPF4B WILD-TYPE 176 129 70
'PRPF4B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.194 (Fisher's exact test), Q value = 0.5

Table S17492.  Gene #1661: 'PRPF4B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
PRPF4B MUTATED 4 3 6 3
PRPF4B WILD-TYPE 108 93 86 183
'PRPF4B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00665 (Fisher's exact test), Q value = 0.075

Table S17493.  Gene #1661: 'PRPF4B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
PRPF4B MUTATED 4 0 6 1 1 1 3
PRPF4B WILD-TYPE 56 50 43 39 62 124 96

Figure S4409.  Get High-res Image Gene #1661: 'PRPF4B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'PRPF4B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0736 (Fisher's exact test), Q value = 0.29

Table S17494.  Gene #1661: 'PRPF4B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
PRPF4B MUTATED 6 5 0 4
PRPF4B WILD-TYPE 124 73 68 192
'PRPF4B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.258 (Fisher's exact test), Q value = 0.58

Table S17495.  Gene #1661: 'PRPF4B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
PRPF4B MUTATED 1 5 1 1 4 2 0 0 1
PRPF4B WILD-TYPE 39 57 27 79 65 46 43 28 73
'PRPF4B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0954 (Fisher's exact test), Q value = 0.34

Table S17496.  Gene #1661: 'PRPF4B MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
PRPF4B MUTATED 2 0 0 2
PRPF4B WILD-TYPE 31 31 27 17
'PRPF4B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.764 (Fisher's exact test), Q value = 1

Table S17497.  Gene #1661: 'PRPF4B MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
PRPF4B MUTATED 3 0 0 1
PRPF4B WILD-TYPE 51 10 24 21
'ARHGEF6 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0146 (Fisher's exact test), Q value = 0.12

Table S17498.  Gene #1662: 'ARHGEF6 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ARHGEF6 MUTATED 5 0 1 1
ARHGEF6 WILD-TYPE 41 58 63 42

Figure S4410.  Get High-res Image Gene #1662: 'ARHGEF6 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'ARHGEF6 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.105 (Fisher's exact test), Q value = 0.36

Table S17499.  Gene #1662: 'ARHGEF6 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ARHGEF6 MUTATED 4 1 2
ARHGEF6 WILD-TYPE 47 82 75
'ARHGEF6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00246 (Fisher's exact test), Q value = 0.043

Table S17500.  Gene #1662: 'ARHGEF6 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ARHGEF6 MUTATED 12 2 0 1
ARHGEF6 WILD-TYPE 166 181 101 19

Figure S4411.  Get High-res Image Gene #1662: 'ARHGEF6 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ARHGEF6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.606 (Fisher's exact test), Q value = 0.91

Table S17501.  Gene #1662: 'ARHGEF6 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ARHGEF6 MUTATED 3 1 4
ARHGEF6 WILD-TYPE 84 79 96
'ARHGEF6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.139 (Fisher's exact test), Q value = 0.41

Table S17502.  Gene #1662: 'ARHGEF6 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ARHGEF6 MUTATED 0 6 6
ARHGEF6 WILD-TYPE 89 154 132
'ARHGEF6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.5 (Fisher's exact test), Q value = 0.83

Table S17503.  Gene #1662: 'ARHGEF6 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ARHGEF6 MUTATED 4 6 2
ARHGEF6 WILD-TYPE 178 127 70
'ARHGEF6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.698 (Fisher's exact test), Q value = 0.97

Table S17504.  Gene #1662: 'ARHGEF6 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ARHGEF6 MUTATED 2 3 2 8
ARHGEF6 WILD-TYPE 110 93 90 178
'ARHGEF6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.155 (Fisher's exact test), Q value = 0.44

Table S17505.  Gene #1662: 'ARHGEF6 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ARHGEF6 MUTATED 2 2 3 0 1 1 6
ARHGEF6 WILD-TYPE 58 48 46 40 62 124 93
'ARHGEF6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.652 (Fisher's exact test), Q value = 0.94

Table S17506.  Gene #1662: 'ARHGEF6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ARHGEF6 MUTATED 3 2 1 9
ARHGEF6 WILD-TYPE 127 76 67 187
'ARHGEF6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.269 (Fisher's exact test), Q value = 0.59

Table S17507.  Gene #1662: 'ARHGEF6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ARHGEF6 MUTATED 0 2 0 3 5 0 2 2 1
ARHGEF6 WILD-TYPE 40 60 28 77 64 48 41 26 73
'HK3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0646 (Fisher's exact test), Q value = 0.28

Table S17508.  Gene #1663: 'HK3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
HK3 MUTATED 1 0 0 2
HK3 WILD-TYPE 45 58 64 41
'HK3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.184 (Fisher's exact test), Q value = 0.48

Table S17509.  Gene #1663: 'HK3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
HK3 MUTATED 2 0 1
HK3 WILD-TYPE 49 83 76
'HK3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.031 (Fisher's exact test), Q value = 0.18

Table S17510.  Gene #1663: 'HK3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
HK3 MUTATED 14 3 5 0
HK3 WILD-TYPE 164 180 96 20

Figure S4412.  Get High-res Image Gene #1663: 'HK3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'HK3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0473 (Fisher's exact test), Q value = 0.23

Table S17511.  Gene #1663: 'HK3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
HK3 MUTATED 2 4 11
HK3 WILD-TYPE 85 76 89

Figure S4413.  Get High-res Image Gene #1663: 'HK3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'HK3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.594 (Fisher's exact test), Q value = 0.9

Table S17512.  Gene #1663: 'HK3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
HK3 MUTATED 2 6 7
HK3 WILD-TYPE 87 154 131
'HK3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.884 (Fisher's exact test), Q value = 1

Table S17513.  Gene #1663: 'HK3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
HK3 MUTATED 7 6 2
HK3 WILD-TYPE 175 127 70
'HK3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0322 (Fisher's exact test), Q value = 0.18

Table S17514.  Gene #1663: 'HK3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
HK3 MUTATED 2 10 3 7
HK3 WILD-TYPE 110 86 89 179

Figure S4414.  Get High-res Image Gene #1663: 'HK3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'HK3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00084 (Fisher's exact test), Q value = 0.022

Table S17515.  Gene #1663: 'HK3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
HK3 MUTATED 2 2 9 2 1 1 5
HK3 WILD-TYPE 58 48 40 38 62 124 94

Figure S4415.  Get High-res Image Gene #1663: 'HK3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'HK3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0469 (Fisher's exact test), Q value = 0.23

Table S17516.  Gene #1663: 'HK3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
HK3 MUTATED 9 0 5 8
HK3 WILD-TYPE 121 78 63 188

Figure S4416.  Get High-res Image Gene #1663: 'HK3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'HK3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00029 (Fisher's exact test), Q value = 0.011

Table S17517.  Gene #1663: 'HK3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
HK3 MUTATED 1 2 2 0 10 0 5 0 2
HK3 WILD-TYPE 39 60 26 80 59 48 38 28 72

Figure S4417.  Get High-res Image Gene #1663: 'HK3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'HK3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0206 (Fisher's exact test), Q value = 0.14

Table S17518.  Gene #1663: 'HK3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
HK3 MUTATED 0 0 3 2
HK3 WILD-TYPE 33 31 24 17

Figure S4418.  Get High-res Image Gene #1663: 'HK3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'HK3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.38 (Fisher's exact test), Q value = 0.71

Table S17519.  Gene #1663: 'HK3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
HK3 MUTATED 2 1 2 0
HK3 WILD-TYPE 52 9 22 22
'OR5R1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0872 (Fisher's exact test), Q value = 0.32

Table S17520.  Gene #1664: 'OR5R1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
OR5R1 MUTATED 3 0 1 0
OR5R1 WILD-TYPE 43 58 63 43
'OR5R1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.228 (Fisher's exact test), Q value = 0.55

Table S17521.  Gene #1664: 'OR5R1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
OR5R1 MUTATED 2 2 0
OR5R1 WILD-TYPE 49 81 77
'OR5R1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.542 (Fisher's exact test), Q value = 0.86

Table S17522.  Gene #1664: 'OR5R1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
OR5R1 MUTATED 8 4 2 0
OR5R1 WILD-TYPE 170 179 99 20
'OR5R1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.784 (Fisher's exact test), Q value = 1

Table S17523.  Gene #1664: 'OR5R1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
OR5R1 MUTATED 3 4 3
OR5R1 WILD-TYPE 84 76 97
'OR5R1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.319 (Fisher's exact test), Q value = 0.65

Table S17524.  Gene #1664: 'OR5R1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
OR5R1 MUTATED 1 3 6
OR5R1 WILD-TYPE 88 157 132
'OR5R1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.914 (Fisher's exact test), Q value = 1

Table S17525.  Gene #1664: 'OR5R1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
OR5R1 MUTATED 5 4 1
OR5R1 WILD-TYPE 177 129 71
'OR5R1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.586 (Fisher's exact test), Q value = 0.89

Table S17526.  Gene #1664: 'OR5R1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
OR5R1 MUTATED 5 3 1 5
OR5R1 WILD-TYPE 107 93 91 181
'OR5R1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.995 (Fisher's exact test), Q value = 1

Table S17527.  Gene #1664: 'OR5R1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
OR5R1 MUTATED 2 2 1 1 2 3 3
OR5R1 WILD-TYPE 58 48 48 39 61 122 96
'OR5R1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.871 (Fisher's exact test), Q value = 1

Table S17528.  Gene #1664: 'OR5R1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
OR5R1 MUTATED 5 2 1 6
OR5R1 WILD-TYPE 125 76 67 190
'OR5R1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.989 (Fisher's exact test), Q value = 1

Table S17529.  Gene #1664: 'OR5R1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
OR5R1 MUTATED 1 2 0 2 3 2 1 0 3
OR5R1 WILD-TYPE 39 60 28 78 66 46 42 28 71
'TCEANC MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0257 (Fisher's exact test), Q value = 0.16

Table S17530.  Gene #1665: 'TCEANC MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
TCEANC MUTATED 3 0 0 2
TCEANC WILD-TYPE 43 58 64 41

Figure S4419.  Get High-res Image Gene #1665: 'TCEANC MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'TCEANC MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.252 (Fisher's exact test), Q value = 0.58

Table S17531.  Gene #1665: 'TCEANC MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
TCEANC MUTATED 3 1 1
TCEANC WILD-TYPE 48 82 76
'TCEANC MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00184 (Fisher's exact test), Q value = 0.036

Table S17532.  Gene #1665: 'TCEANC MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
TCEANC MUTATED 8 0 0 1
TCEANC WILD-TYPE 170 183 101 19

Figure S4420.  Get High-res Image Gene #1665: 'TCEANC MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'TCEANC MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.555 (Fisher's exact test), Q value = 0.87

Table S17533.  Gene #1665: 'TCEANC MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
TCEANC MUTATED 2 0 2
TCEANC WILD-TYPE 85 80 98
'TCEANC MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.31 (Fisher's exact test), Q value = 0.64

Table S17534.  Gene #1665: 'TCEANC MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
TCEANC MUTATED 0 4 4
TCEANC WILD-TYPE 89 156 134
'TCEANC MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.642 (Fisher's exact test), Q value = 0.93

Table S17535.  Gene #1665: 'TCEANC MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
TCEANC MUTATED 3 4 1
TCEANC WILD-TYPE 179 129 71
'TCEANC MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.194 (Fisher's exact test), Q value = 0.5

Table S17536.  Gene #1665: 'TCEANC MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
TCEANC MUTATED 0 1 3 5
TCEANC WILD-TYPE 112 95 89 181
'TCEANC MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0475 (Fisher's exact test), Q value = 0.23

Table S17537.  Gene #1665: 'TCEANC MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
TCEANC MUTATED 1 0 4 0 0 1 3
TCEANC WILD-TYPE 59 50 45 40 63 124 96

Figure S4421.  Get High-res Image Gene #1665: 'TCEANC MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'TCEANC MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.437 (Fisher's exact test), Q value = 0.76

Table S17538.  Gene #1665: 'TCEANC MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
TCEANC MUTATED 1 2 0 5
TCEANC WILD-TYPE 129 76 68 191
'TCEANC MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.158 (Fisher's exact test), Q value = 0.45

Table S17539.  Gene #1665: 'TCEANC MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
TCEANC MUTATED 0 2 0 1 4 0 0 1 0
TCEANC WILD-TYPE 40 60 28 79 65 48 43 27 74
'TCEANC MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.137 (Fisher's exact test), Q value = 0.41

Table S17540.  Gene #1665: 'TCEANC MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
TCEANC MUTATED 1 0 0 2
TCEANC WILD-TYPE 32 31 27 17
'TCEANC MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S17541.  Gene #1665: 'TCEANC MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
TCEANC MUTATED 2 0 1 0
TCEANC WILD-TYPE 52 10 23 22
'GJA10 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00366 (Fisher's exact test), Q value = 0.055

Table S17542.  Gene #1666: 'GJA10 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
GJA10 MUTATED 1 0 0 4
GJA10 WILD-TYPE 45 58 64 39

Figure S4422.  Get High-res Image Gene #1666: 'GJA10 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'GJA10 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S17543.  Gene #1666: 'GJA10 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
GJA10 MUTATED 1 2 2
GJA10 WILD-TYPE 50 81 75
'GJA10 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00103 (Fisher's exact test), Q value = 0.025

Table S17544.  Gene #1666: 'GJA10 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
GJA10 MUTATED 12 1 0 0
GJA10 WILD-TYPE 166 182 101 20

Figure S4423.  Get High-res Image Gene #1666: 'GJA10 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'GJA10 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.328 (Fisher's exact test), Q value = 0.66

Table S17545.  Gene #1666: 'GJA10 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
GJA10 MUTATED 3 0 2
GJA10 WILD-TYPE 84 80 98
'GJA10 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.274 (Fisher's exact test), Q value = 0.6

Table S17546.  Gene #1666: 'GJA10 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
GJA10 MUTATED 1 8 4
GJA10 WILD-TYPE 88 152 134
'GJA10 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.128 (Fisher's exact test), Q value = 0.4

Table S17547.  Gene #1666: 'GJA10 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
GJA10 MUTATED 6 7 0
GJA10 WILD-TYPE 176 126 72
'GJA10 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.962 (Fisher's exact test), Q value = 1

Table S17548.  Gene #1666: 'GJA10 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
GJA10 MUTATED 3 2 3 6
GJA10 WILD-TYPE 109 94 89 180
'GJA10 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.474 (Fisher's exact test), Q value = 0.8

Table S17549.  Gene #1666: 'GJA10 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
GJA10 MUTATED 3 1 3 0 1 2 4
GJA10 WILD-TYPE 57 49 46 40 62 123 95
'GJA10 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.213 (Fisher's exact test), Q value = 0.52

Table S17550.  Gene #1666: 'GJA10 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
GJA10 MUTATED 3 1 0 9
GJA10 WILD-TYPE 127 77 68 187
'GJA10 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.77 (Fisher's exact test), Q value = 1

Table S17551.  Gene #1666: 'GJA10 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
GJA10 MUTATED 1 3 1 3 3 0 0 0 2
GJA10 WILD-TYPE 39 59 27 77 66 48 43 28 72
'AP1G1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0734 (Fisher's exact test), Q value = 0.29

Table S17552.  Gene #1667: 'AP1G1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
AP1G1 MUTATED 2 0 0 2
AP1G1 WILD-TYPE 44 58 64 41
'AP1G1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.557 (Fisher's exact test), Q value = 0.87

Table S17553.  Gene #1667: 'AP1G1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
AP1G1 MUTATED 2 1 1
AP1G1 WILD-TYPE 49 82 76
'AP1G1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.332 (Fisher's exact test), Q value = 0.66

Table S17554.  Gene #1667: 'AP1G1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
AP1G1 MUTATED 8 4 1 0
AP1G1 WILD-TYPE 170 179 100 20
'AP1G1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.764 (Fisher's exact test), Q value = 1

Table S17555.  Gene #1667: 'AP1G1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
AP1G1 MUTATED 4 2 3
AP1G1 WILD-TYPE 83 78 97
'AP1G1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.203 (Fisher's exact test), Q value = 0.51

Table S17556.  Gene #1667: 'AP1G1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
AP1G1 MUTATED 0 5 5
AP1G1 WILD-TYPE 89 155 133
'AP1G1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.135 (Fisher's exact test), Q value = 0.41

Table S17557.  Gene #1667: 'AP1G1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
AP1G1 MUTATED 2 6 2
AP1G1 WILD-TYPE 180 127 70
'AP1G1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.531 (Fisher's exact test), Q value = 0.85

Table S17558.  Gene #1667: 'AP1G1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
AP1G1 MUTATED 4 4 1 4
AP1G1 WILD-TYPE 108 92 91 182
'AP1G1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.223 (Fisher's exact test), Q value = 0.54

Table S17559.  Gene #1667: 'AP1G1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
AP1G1 MUTATED 4 2 2 0 2 1 2
AP1G1 WILD-TYPE 56 48 47 40 61 124 97
'AP1G1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.757 (Fisher's exact test), Q value = 1

Table S17560.  Gene #1667: 'AP1G1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
AP1G1 MUTATED 5 2 1 4
AP1G1 WILD-TYPE 125 76 67 192
'AP1G1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.621 (Fisher's exact test), Q value = 0.92

Table S17561.  Gene #1667: 'AP1G1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
AP1G1 MUTATED 1 1 0 1 3 3 2 0 1
AP1G1 WILD-TYPE 39 61 28 79 66 45 41 28 73
'PLEKHA3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.154 (Fisher's exact test), Q value = 0.44

Table S17562.  Gene #1668: 'PLEKHA3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
PLEKHA3 MUTATED 0 1 0 2
PLEKHA3 WILD-TYPE 46 57 64 41
'PLEKHA3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.789 (Fisher's exact test), Q value = 1

Table S17563.  Gene #1668: 'PLEKHA3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
PLEKHA3 MUTATED 0 2 1
PLEKHA3 WILD-TYPE 51 81 76
'PLEKHA3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.163 (Fisher's exact test), Q value = 0.46

Table S17564.  Gene #1668: 'PLEKHA3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
PLEKHA3 MUTATED 6 2 0 0
PLEKHA3 WILD-TYPE 172 181 101 20
'PLEKHA3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.384 (Fisher's exact test), Q value = 0.71

Table S17565.  Gene #1668: 'PLEKHA3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
PLEKHA3 MUTATED 2 0 3
PLEKHA3 WILD-TYPE 85 80 97
'PLEKHA3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.295 (Fisher's exact test), Q value = 0.62

Table S17566.  Gene #1668: 'PLEKHA3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
PLEKHA3 MUTATED 0 4 1
PLEKHA3 WILD-TYPE 89 156 137
'PLEKHA3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.595 (Fisher's exact test), Q value = 0.9

Table S17567.  Gene #1668: 'PLEKHA3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
PLEKHA3 MUTATED 2 3 0
PLEKHA3 WILD-TYPE 180 130 72
'PLEKHA3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.557 (Fisher's exact test), Q value = 0.87

Table S17568.  Gene #1668: 'PLEKHA3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
PLEKHA3 MUTATED 1 3 2 2
PLEKHA3 WILD-TYPE 111 93 90 184
'PLEKHA3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.206 (Fisher's exact test), Q value = 0.51

Table S17569.  Gene #1668: 'PLEKHA3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
PLEKHA3 MUTATED 1 1 3 1 0 1 1
PLEKHA3 WILD-TYPE 59 49 46 39 63 124 98
'PLEKHA3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.864 (Fisher's exact test), Q value = 1

Table S17570.  Gene #1668: 'PLEKHA3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
PLEKHA3 MUTATED 3 1 1 2
PLEKHA3 WILD-TYPE 127 77 67 194
'PLEKHA3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.306 (Fisher's exact test), Q value = 0.64

Table S17571.  Gene #1668: 'PLEKHA3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
PLEKHA3 MUTATED 1 2 1 0 2 0 1 0 0
PLEKHA3 WILD-TYPE 39 60 27 80 67 48 42 28 74
'PCNA MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.89 (Fisher's exact test), Q value = 1

Table S17572.  Gene #1669: 'PCNA MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
PCNA MUTATED 0 1 1 1
PCNA WILD-TYPE 46 57 63 42
'PCNA MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.12 (Fisher's exact test), Q value = 0.39

Table S17573.  Gene #1669: 'PCNA MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
PCNA MUTATED 0 3 0
PCNA WILD-TYPE 51 80 77
'PCNA MUTATION STATUS' versus 'CN_CNMF'

P value = 0.874 (Fisher's exact test), Q value = 1

Table S17574.  Gene #1669: 'PCNA MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
PCNA MUTATED 1 3 1 0
PCNA WILD-TYPE 177 180 100 20
'PCNA MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.555 (Fisher's exact test), Q value = 0.87

Table S17575.  Gene #1669: 'PCNA MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
PCNA MUTATED 0 3 1
PCNA WILD-TYPE 89 157 137
'PCNA MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S17576.  Gene #1669: 'PCNA MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
PCNA MUTATED 2 1 1
PCNA WILD-TYPE 180 132 71
'PCNA MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.265 (Fisher's exact test), Q value = 0.59

Table S17577.  Gene #1669: 'PCNA MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
PCNA MUTATED 0 0 2 3
PCNA WILD-TYPE 112 96 90 183
'PCNA MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.712 (Fisher's exact test), Q value = 0.98

Table S17578.  Gene #1669: 'PCNA MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
PCNA MUTATED 0 0 0 0 2 2 1
PCNA WILD-TYPE 60 50 49 40 61 123 98
'PCNA MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.439 (Fisher's exact test), Q value = 0.77

Table S17579.  Gene #1669: 'PCNA MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
PCNA MUTATED 1 0 2 2
PCNA WILD-TYPE 129 78 66 194
'PCNA MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.232 (Fisher's exact test), Q value = 0.55

Table S17580.  Gene #1669: 'PCNA MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
PCNA MUTATED 0 2 1 0 0 0 0 0 2
PCNA WILD-TYPE 40 60 27 80 69 48 43 28 72
'ABCB6 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.31 (Fisher's exact test), Q value = 0.64

Table S17581.  Gene #1670: 'ABCB6 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ABCB6 MUTATED 1 1 0 2
ABCB6 WILD-TYPE 45 57 64 41
'ABCB6 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.554 (Fisher's exact test), Q value = 0.87

Table S17582.  Gene #1670: 'ABCB6 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ABCB6 MUTATED 2 1 1
ABCB6 WILD-TYPE 49 82 76
'ABCB6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.127 (Fisher's exact test), Q value = 0.4

Table S17583.  Gene #1670: 'ABCB6 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ABCB6 MUTATED 5 1 1 1
ABCB6 WILD-TYPE 173 182 100 19
'ABCB6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0193 (Fisher's exact test), Q value = 0.14

Table S17584.  Gene #1670: 'ABCB6 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ABCB6 MUTATED 4 0 0
ABCB6 WILD-TYPE 83 80 100

Figure S4424.  Get High-res Image Gene #1670: 'ABCB6 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'ABCB6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.141 (Fisher's exact test), Q value = 0.42

Table S17585.  Gene #1670: 'ABCB6 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ABCB6 MUTATED 0 2 5
ABCB6 WILD-TYPE 89 158 133
'ABCB6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S17586.  Gene #1670: 'ABCB6 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ABCB6 MUTATED 4 2 1
ABCB6 WILD-TYPE 178 131 71
'ABCB6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.827 (Fisher's exact test), Q value = 1

Table S17587.  Gene #1670: 'ABCB6 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ABCB6 MUTATED 1 1 2 4
ABCB6 WILD-TYPE 111 95 90 182
'ABCB6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0902 (Fisher's exact test), Q value = 0.33

Table S17588.  Gene #1670: 'ABCB6 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ABCB6 MUTATED 2 0 2 1 0 0 3
ABCB6 WILD-TYPE 58 50 47 39 63 125 96
'ABCB6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.902 (Fisher's exact test), Q value = 1

Table S17589.  Gene #1670: 'ABCB6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ABCB6 MUTATED 2 1 0 4
ABCB6 WILD-TYPE 128 77 68 192
'ABCB6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.642 (Fisher's exact test), Q value = 0.93

Table S17590.  Gene #1670: 'ABCB6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ABCB6 MUTATED 1 2 0 1 1 0 1 1 0
ABCB6 WILD-TYPE 39 60 28 79 68 48 42 27 74
'GGNBP2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0409 (Fisher's exact test), Q value = 0.21

Table S17591.  Gene #1671: 'GGNBP2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
GGNBP2 MUTATED 0 1 0 3
GGNBP2 WILD-TYPE 46 57 64 40

Figure S4425.  Get High-res Image Gene #1671: 'GGNBP2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'GGNBP2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S17592.  Gene #1671: 'GGNBP2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
GGNBP2 MUTATED 1 2 1
GGNBP2 WILD-TYPE 50 81 76
'GGNBP2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.36 (Fisher's exact test), Q value = 0.69

Table S17593.  Gene #1671: 'GGNBP2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
GGNBP2 MUTATED 8 3 2 0
GGNBP2 WILD-TYPE 170 180 99 20
'GGNBP2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.434 (Fisher's exact test), Q value = 0.76

Table S17594.  Gene #1671: 'GGNBP2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
GGNBP2 MUTATED 3 1 5
GGNBP2 WILD-TYPE 84 79 95
'GGNBP2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.423 (Fisher's exact test), Q value = 0.75

Table S17595.  Gene #1671: 'GGNBP2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
GGNBP2 MUTATED 1 5 6
GGNBP2 WILD-TYPE 88 155 132
'GGNBP2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.245 (Fisher's exact test), Q value = 0.57

Table S17596.  Gene #1671: 'GGNBP2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
GGNBP2 MUTATED 7 5 0
GGNBP2 WILD-TYPE 175 128 72
'GGNBP2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.114 (Fisher's exact test), Q value = 0.37

Table S17597.  Gene #1671: 'GGNBP2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
GGNBP2 MUTATED 1 2 6 4
GGNBP2 WILD-TYPE 111 94 86 182
'GGNBP2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0576 (Fisher's exact test), Q value = 0.26

Table S17598.  Gene #1671: 'GGNBP2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
GGNBP2 MUTATED 4 1 4 0 1 1 2
GGNBP2 WILD-TYPE 56 49 45 40 62 124 97
'GGNBP2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.187 (Fisher's exact test), Q value = 0.49

Table S17599.  Gene #1671: 'GGNBP2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
GGNBP2 MUTATED 6 0 2 4
GGNBP2 WILD-TYPE 124 78 66 192
'GGNBP2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.575 (Fisher's exact test), Q value = 0.88

Table S17600.  Gene #1671: 'GGNBP2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
GGNBP2 MUTATED 1 1 2 2 3 0 2 0 1
GGNBP2 WILD-TYPE 39 61 26 78 66 48 41 28 73
'CCDC3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.179 (Fisher's exact test), Q value = 0.48

Table S17601.  Gene #1672: 'CCDC3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
CCDC3 MUTATED 4 0 1 0
CCDC3 WILD-TYPE 174 183 100 20
'CCDC3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.689 (Fisher's exact test), Q value = 0.97

Table S17602.  Gene #1672: 'CCDC3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
CCDC3 MUTATED 1 2 1
CCDC3 WILD-TYPE 86 78 99
'CCDC3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S17603.  Gene #1672: 'CCDC3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
CCDC3 MUTATED 1 2 2
CCDC3 WILD-TYPE 88 158 136
'CCDC3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S17604.  Gene #1672: 'CCDC3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
CCDC3 MUTATED 2 2 1
CCDC3 WILD-TYPE 180 131 71
'CCDC3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.243 (Fisher's exact test), Q value = 0.57

Table S17605.  Gene #1672: 'CCDC3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
CCDC3 MUTATED 3 1 0 1
CCDC3 WILD-TYPE 109 95 92 185
'CCDC3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00128 (Fisher's exact test), Q value = 0.029

Table S17606.  Gene #1672: 'CCDC3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
CCDC3 MUTATED 4 0 0 1 0 0 0
CCDC3 WILD-TYPE 56 50 49 39 63 125 99

Figure S4426.  Get High-res Image Gene #1672: 'CCDC3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CCDC3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.325 (Fisher's exact test), Q value = 0.65

Table S17607.  Gene #1672: 'CCDC3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
CCDC3 MUTATED 3 0 1 1
CCDC3 WILD-TYPE 127 78 67 195
'CCDC3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.336 (Fisher's exact test), Q value = 0.66

Table S17608.  Gene #1672: 'CCDC3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
CCDC3 MUTATED 2 0 0 1 1 0 1 0 0
CCDC3 WILD-TYPE 38 62 28 79 68 48 42 28 74
'TATDN2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0344 (Fisher's exact test), Q value = 0.19

Table S17609.  Gene #1673: 'TATDN2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
TATDN2 MUTATED 2 1 0 4
TATDN2 WILD-TYPE 44 57 64 39

Figure S4427.  Get High-res Image Gene #1673: 'TATDN2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'TATDN2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.125 (Fisher's exact test), Q value = 0.39

Table S17610.  Gene #1673: 'TATDN2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
TATDN2 MUTATED 4 2 1
TATDN2 WILD-TYPE 47 81 76
'TATDN2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00518 (Fisher's exact test), Q value = 0.065

Table S17611.  Gene #1673: 'TATDN2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
TATDN2 MUTATED 9 0 2 1
TATDN2 WILD-TYPE 169 183 99 19

Figure S4428.  Get High-res Image Gene #1673: 'TATDN2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'TATDN2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.633 (Fisher's exact test), Q value = 0.93

Table S17612.  Gene #1673: 'TATDN2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
TATDN2 MUTATED 1 1 3
TATDN2 WILD-TYPE 86 79 97
'TATDN2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.795 (Fisher's exact test), Q value = 1

Table S17613.  Gene #1673: 'TATDN2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
TATDN2 MUTATED 2 4 5
TATDN2 WILD-TYPE 87 156 133
'TATDN2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.847 (Fisher's exact test), Q value = 1

Table S17614.  Gene #1673: 'TATDN2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
TATDN2 MUTATED 6 4 1
TATDN2 WILD-TYPE 176 129 71
'TATDN2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.412 (Fisher's exact test), Q value = 0.74

Table S17615.  Gene #1673: 'TATDN2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
TATDN2 MUTATED 1 3 1 7
TATDN2 WILD-TYPE 111 93 91 179
'TATDN2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0734 (Fisher's exact test), Q value = 0.29

Table S17616.  Gene #1673: 'TATDN2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
TATDN2 MUTATED 1 0 3 0 1 1 6
TATDN2 WILD-TYPE 59 50 46 40 62 124 93
'TATDN2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.265 (Fisher's exact test), Q value = 0.59

Table S17617.  Gene #1673: 'TATDN2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
TATDN2 MUTATED 1 1 1 8
TATDN2 WILD-TYPE 129 77 67 188
'TATDN2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0495 (Fisher's exact test), Q value = 0.24

Table S17618.  Gene #1673: 'TATDN2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
TATDN2 MUTATED 1 1 1 0 6 0 1 0 1
TATDN2 WILD-TYPE 39 61 27 80 63 48 42 28 73

Figure S4429.  Get High-res Image Gene #1673: 'TATDN2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'TATDN2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.255 (Fisher's exact test), Q value = 0.58

Table S17619.  Gene #1673: 'TATDN2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
TATDN2 MUTATED 2 0 0 1
TATDN2 WILD-TYPE 31 31 27 18
'TATDN2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.696 (Fisher's exact test), Q value = 0.97

Table S17620.  Gene #1673: 'TATDN2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
TATDN2 MUTATED 1 0 1 1
TATDN2 WILD-TYPE 53 10 23 21
'USP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00184 (Fisher's exact test), Q value = 0.036

Table S17621.  Gene #1674: 'USP1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
USP1 MUTATED 8 0 0 1
USP1 WILD-TYPE 170 183 101 19

Figure S4430.  Get High-res Image Gene #1674: 'USP1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'USP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0374 (Fisher's exact test), Q value = 0.2

Table S17622.  Gene #1674: 'USP1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
USP1 MUTATED 6 0 3
USP1 WILD-TYPE 81 80 97

Figure S4431.  Get High-res Image Gene #1674: 'USP1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'USP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.421 (Fisher's exact test), Q value = 0.75

Table S17623.  Gene #1674: 'USP1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
USP1 MUTATED 2 2 5
USP1 WILD-TYPE 87 158 133
'USP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.365 (Fisher's exact test), Q value = 0.69

Table S17624.  Gene #1674: 'USP1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
USP1 MUTATED 6 3 0
USP1 WILD-TYPE 176 130 72
'USP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00226 (Fisher's exact test), Q value = 0.041

Table S17625.  Gene #1674: 'USP1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
USP1 MUTATED 0 2 6 1
USP1 WILD-TYPE 112 94 86 185

Figure S4432.  Get High-res Image Gene #1674: 'USP1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'USP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00017 (Fisher's exact test), Q value = 0.0075

Table S17626.  Gene #1674: 'USP1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
USP1 MUTATED 0 1 6 0 1 0 1
USP1 WILD-TYPE 60 49 43 40 62 125 98

Figure S4433.  Get High-res Image Gene #1674: 'USP1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'USP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.19 (Fisher's exact test), Q value = 0.49

Table S17627.  Gene #1674: 'USP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
USP1 MUTATED 5 2 0 2
USP1 WILD-TYPE 125 76 68 194
'USP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.108 (Fisher's exact test), Q value = 0.36

Table S17628.  Gene #1674: 'USP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
USP1 MUTATED 2 4 0 0 2 0 0 0 1
USP1 WILD-TYPE 38 58 28 80 67 48 43 28 73
'USP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.136 (Fisher's exact test), Q value = 0.41

Table S17629.  Gene #1674: 'USP1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
USP1 MUTATED 1 0 0 2
USP1 WILD-TYPE 32 31 27 17
'USP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.564 (Fisher's exact test), Q value = 0.87

Table S17630.  Gene #1674: 'USP1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
USP1 MUTATED 3 0 0 0
USP1 WILD-TYPE 51 10 24 22
'IFLTD1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.441 (Fisher's exact test), Q value = 0.77

Table S17631.  Gene #1675: 'IFLTD1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
IFLTD1 MUTATED 2 0 1 1
IFLTD1 WILD-TYPE 44 58 63 42
'IFLTD1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0385 (Fisher's exact test), Q value = 0.21

Table S17632.  Gene #1675: 'IFLTD1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
IFLTD1 MUTATED 3 0 1
IFLTD1 WILD-TYPE 48 83 76

Figure S4434.  Get High-res Image Gene #1675: 'IFLTD1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'IFLTD1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.29 (Fisher's exact test), Q value = 0.62

Table S17633.  Gene #1675: 'IFLTD1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
IFLTD1 MUTATED 8 3 1 0
IFLTD1 WILD-TYPE 170 180 100 20
'IFLTD1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.837 (Fisher's exact test), Q value = 1

Table S17634.  Gene #1675: 'IFLTD1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
IFLTD1 MUTATED 2 3 4
IFLTD1 WILD-TYPE 85 77 96
'IFLTD1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.927 (Fisher's exact test), Q value = 1

Table S17635.  Gene #1675: 'IFLTD1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
IFLTD1 MUTATED 3 4 4
IFLTD1 WILD-TYPE 86 156 134
'IFLTD1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.92 (Fisher's exact test), Q value = 1

Table S17636.  Gene #1675: 'IFLTD1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
IFLTD1 MUTATED 6 3 2
IFLTD1 WILD-TYPE 176 130 70
'IFLTD1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.784 (Fisher's exact test), Q value = 1

Table S17637.  Gene #1675: 'IFLTD1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
IFLTD1 MUTATED 2 4 2 5
IFLTD1 WILD-TYPE 110 92 90 181
'IFLTD1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.613 (Fisher's exact test), Q value = 0.91

Table S17638.  Gene #1675: 'IFLTD1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
IFLTD1 MUTATED 1 2 3 0 2 2 3
IFLTD1 WILD-TYPE 59 48 46 40 61 123 96
'IFLTD1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.146 (Fisher's exact test), Q value = 0.43

Table S17639.  Gene #1675: 'IFLTD1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
IFLTD1 MUTATED 7 1 0 5
IFLTD1 WILD-TYPE 123 77 68 191
'IFLTD1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.203 (Fisher's exact test), Q value = 0.51

Table S17640.  Gene #1675: 'IFLTD1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
IFLTD1 MUTATED 3 2 1 2 4 0 1 0 0
IFLTD1 WILD-TYPE 37 60 27 78 65 48 42 28 74
'TLX1NB MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S17641.  Gene #1676: 'TLX1NB MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
TLX1NB MUTATED 1 1 1 0
TLX1NB WILD-TYPE 177 182 100 20
'TLX1NB MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.336 (Fisher's exact test), Q value = 0.66

Table S17642.  Gene #1676: 'TLX1NB MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
TLX1NB MUTATED 1 0 2
TLX1NB WILD-TYPE 88 160 136
'TLX1NB MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S17643.  Gene #1676: 'TLX1NB MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
TLX1NB MUTATED 2 1 0
TLX1NB WILD-TYPE 180 132 72
'TLX1NB MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.522 (Fisher's exact test), Q value = 0.84

Table S17644.  Gene #1676: 'TLX1NB MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
TLX1NB MUTATED 0 0 1 2
TLX1NB WILD-TYPE 112 96 91 184
'TLX1NB MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S17645.  Gene #1676: 'TLX1NB MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
TLX1NB MUTATED 0 0 0 0 1 1 1
TLX1NB WILD-TYPE 60 50 49 40 62 124 98
'TLX1NB MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.551 (Fisher's exact test), Q value = 0.87

Table S17646.  Gene #1676: 'TLX1NB MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
TLX1NB MUTATED 0 1 0 2
TLX1NB WILD-TYPE 130 77 68 194
'TLX1NB MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.377 (Fisher's exact test), Q value = 0.71

Table S17647.  Gene #1676: 'TLX1NB MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
TLX1NB MUTATED 0 1 0 0 1 0 0 1 0
TLX1NB WILD-TYPE 40 61 28 80 68 48 43 27 74
'ZNF323 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.442 (Fisher's exact test), Q value = 0.77

Table S17648.  Gene #1677: 'ZNF323 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ZNF323 MUTATED 6 2 3 0
ZNF323 WILD-TYPE 172 181 98 20
'ZNF323 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.583 (Fisher's exact test), Q value = 0.89

Table S17649.  Gene #1677: 'ZNF323 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ZNF323 MUTATED 2 2 5
ZNF323 WILD-TYPE 85 78 95
'ZNF323 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.696 (Fisher's exact test), Q value = 0.97

Table S17650.  Gene #1677: 'ZNF323 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ZNF323 MUTATED 1 5 3
ZNF323 WILD-TYPE 88 155 135
'ZNF323 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.822 (Fisher's exact test), Q value = 1

Table S17651.  Gene #1677: 'ZNF323 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ZNF323 MUTATED 4 4 1
ZNF323 WILD-TYPE 178 129 71
'ZNF323 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.571 (Fisher's exact test), Q value = 0.88

Table S17652.  Gene #1677: 'ZNF323 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ZNF323 MUTATED 2 4 2 3
ZNF323 WILD-TYPE 110 92 90 183
'ZNF323 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0301 (Fisher's exact test), Q value = 0.18

Table S17653.  Gene #1677: 'ZNF323 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ZNF323 MUTATED 1 2 4 0 1 0 3
ZNF323 WILD-TYPE 59 48 45 40 62 125 96

Figure S4435.  Get High-res Image Gene #1677: 'ZNF323 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ZNF323 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.713 (Fisher's exact test), Q value = 0.98

Table S17654.  Gene #1677: 'ZNF323 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ZNF323 MUTATED 5 1 1 4
ZNF323 WILD-TYPE 125 77 67 192
'ZNF323 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.697 (Fisher's exact test), Q value = 0.97

Table S17655.  Gene #1677: 'ZNF323 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ZNF323 MUTATED 0 1 2 2 2 1 2 0 1
ZNF323 WILD-TYPE 40 61 26 78 67 47 41 28 73
'ZNF323 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00855 (Fisher's exact test), Q value = 0.086

Table S17656.  Gene #1677: 'ZNF323 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
ZNF323 MUTATED 0 0 1 3
ZNF323 WILD-TYPE 33 31 26 16

Figure S4436.  Get High-res Image Gene #1677: 'ZNF323 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'ZNF323 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S17657.  Gene #1677: 'ZNF323 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
ZNF323 MUTATED 2 0 1 1
ZNF323 WILD-TYPE 52 10 23 21
'ANAPC16 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.822 (Fisher's exact test), Q value = 1

Table S17658.  Gene #1678: 'ANAPC16 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ANAPC16 MUTATED 1 2 0 0
ANAPC16 WILD-TYPE 177 181 101 20
'ANAPC16 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S17659.  Gene #1678: 'ANAPC16 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ANAPC16 MUTATED 1 1 1
ANAPC16 WILD-TYPE 88 159 137
'ANAPC16 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S17660.  Gene #1678: 'ANAPC16 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ANAPC16 MUTATED 2 1 0
ANAPC16 WILD-TYPE 180 132 72
'ANAPC16 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.608 (Fisher's exact test), Q value = 0.91

Table S17661.  Gene #1678: 'ANAPC16 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ANAPC16 MUTATED 0 1 1 1
ANAPC16 WILD-TYPE 112 95 91 185
'ANAPC16 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.367 (Fisher's exact test), Q value = 0.7

Table S17662.  Gene #1678: 'ANAPC16 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ANAPC16 MUTATED 0 1 0 1 0 1 0
ANAPC16 WILD-TYPE 60 49 49 39 63 124 99
'AKAP7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.627 (Fisher's exact test), Q value = 0.92

Table S17663.  Gene #1679: 'AKAP7 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
AKAP7 MUTATED 3 1 2 0
AKAP7 WILD-TYPE 175 182 99 20
'AKAP7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S17664.  Gene #1679: 'AKAP7 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
AKAP7 MUTATED 2 1 2
AKAP7 WILD-TYPE 85 79 98
'AKAP7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S17665.  Gene #1679: 'AKAP7 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
AKAP7 MUTATED 1 2 2
AKAP7 WILD-TYPE 88 158 136
'AKAP7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.717 (Fisher's exact test), Q value = 0.99

Table S17666.  Gene #1679: 'AKAP7 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
AKAP7 MUTATED 3 2 0
AKAP7 WILD-TYPE 179 131 72
'AKAP7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.457 (Fisher's exact test), Q value = 0.78

Table S17667.  Gene #1679: 'AKAP7 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
AKAP7 MUTATED 0 1 2 3
AKAP7 WILD-TYPE 112 95 90 183
'AKAP7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.577 (Fisher's exact test), Q value = 0.88

Table S17668.  Gene #1679: 'AKAP7 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
AKAP7 MUTATED 1 0 2 0 0 2 1
AKAP7 WILD-TYPE 59 50 47 40 63 123 98
'AKAP7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.744 (Fisher's exact test), Q value = 1

Table S17669.  Gene #1679: 'AKAP7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
AKAP7 MUTATED 3 1 0 2
AKAP7 WILD-TYPE 127 77 68 194
'AKAP7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.301 (Fisher's exact test), Q value = 0.63

Table S17670.  Gene #1679: 'AKAP7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
AKAP7 MUTATED 1 1 1 2 0 0 0 1 0
AKAP7 WILD-TYPE 39 61 27 78 69 48 43 27 74
'MUM1L1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.179 (Fisher's exact test), Q value = 0.48

Table S17671.  Gene #1680: 'MUM1L1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
MUM1L1 MUTATED 3 0 1 1
MUM1L1 WILD-TYPE 43 58 63 42
'MUM1L1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.739 (Fisher's exact test), Q value = 1

Table S17672.  Gene #1680: 'MUM1L1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
MUM1L1 MUTATED 2 2 1
MUM1L1 WILD-TYPE 49 81 76
'MUM1L1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.513 (Fisher's exact test), Q value = 0.83

Table S17673.  Gene #1680: 'MUM1L1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
MUM1L1 MUTATED 7 7 1 0
MUM1L1 WILD-TYPE 171 176 100 20
'MUM1L1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0731 (Fisher's exact test), Q value = 0.29

Table S17674.  Gene #1680: 'MUM1L1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
MUM1L1 MUTATED 2 7 2
MUM1L1 WILD-TYPE 85 73 98
'MUM1L1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.14 (Fisher's exact test), Q value = 0.42

Table S17675.  Gene #1680: 'MUM1L1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
MUM1L1 MUTATED 0 6 6
MUM1L1 WILD-TYPE 89 154 132
'MUM1L1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.541 (Fisher's exact test), Q value = 0.86

Table S17676.  Gene #1680: 'MUM1L1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
MUM1L1 MUTATED 5 6 1
MUM1L1 WILD-TYPE 177 127 71
'MUM1L1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0723 (Fisher's exact test), Q value = 0.29

Table S17677.  Gene #1680: 'MUM1L1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
MUM1L1 MUTATED 7 0 3 6
MUM1L1 WILD-TYPE 105 96 89 180
'MUM1L1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.135 (Fisher's exact test), Q value = 0.41

Table S17678.  Gene #1680: 'MUM1L1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
MUM1L1 MUTATED 6 2 1 0 2 2 3
MUM1L1 WILD-TYPE 54 48 48 40 61 123 96
'MUM1L1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.933 (Fisher's exact test), Q value = 1

Table S17679.  Gene #1680: 'MUM1L1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
MUM1L1 MUTATED 4 2 3 7
MUM1L1 WILD-TYPE 126 76 65 189
'MUM1L1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.486 (Fisher's exact test), Q value = 0.81

Table S17680.  Gene #1680: 'MUM1L1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
MUM1L1 MUTATED 2 2 0 2 5 1 3 0 1
MUM1L1 WILD-TYPE 38 60 28 78 64 47 40 28 73
'MUM1L1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S17681.  Gene #1680: 'MUM1L1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
MUM1L1 MUTATED 1 1 1 1
MUM1L1 WILD-TYPE 32 30 26 18
'MUM1L1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.269 (Fisher's exact test), Q value = 0.59

Table S17682.  Gene #1680: 'MUM1L1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
MUM1L1 MUTATED 1 1 1 1
MUM1L1 WILD-TYPE 53 9 23 21
'ISOC2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.322 (Fisher's exact test), Q value = 0.65

Table S17683.  Gene #1681: 'ISOC2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ISOC2 MUTATED 2 1 1 1
ISOC2 WILD-TYPE 176 182 100 19
'ISOC2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S17684.  Gene #1681: 'ISOC2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ISOC2 MUTATED 2 1 2
ISOC2 WILD-TYPE 85 79 98
'ISOC2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.85 (Fisher's exact test), Q value = 1

Table S17685.  Gene #1681: 'ISOC2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ISOC2 MUTATED 1 3 1
ISOC2 WILD-TYPE 88 157 137
'ISOC2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.592 (Fisher's exact test), Q value = 0.9

Table S17686.  Gene #1681: 'ISOC2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ISOC2 MUTATED 2 3 0
ISOC2 WILD-TYPE 180 130 72
'ISOC2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0139 (Fisher's exact test), Q value = 0.12

Table S17687.  Gene #1681: 'ISOC2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ISOC2 MUTATED 0 2 3 0
ISOC2 WILD-TYPE 112 94 89 186

Figure S4437.  Get High-res Image Gene #1681: 'ISOC2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'ISOC2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0223 (Fisher's exact test), Q value = 0.15

Table S17688.  Gene #1681: 'ISOC2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ISOC2 MUTATED 0 0 2 1 2 0 0
ISOC2 WILD-TYPE 60 50 47 39 61 125 99

Figure S4438.  Get High-res Image Gene #1681: 'ISOC2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ISOC2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0371 (Fisher's exact test), Q value = 0.2

Table S17689.  Gene #1681: 'ISOC2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ISOC2 MUTATED 4 1 0 0
ISOC2 WILD-TYPE 126 77 68 196

Figure S4439.  Get High-res Image Gene #1681: 'ISOC2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'ISOC2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0356 (Fisher's exact test), Q value = 0.2

Table S17690.  Gene #1681: 'ISOC2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ISOC2 MUTATED 3 1 0 0 1 0 0 0 0
ISOC2 WILD-TYPE 37 61 28 80 68 48 43 28 74

Figure S4440.  Get High-res Image Gene #1681: 'ISOC2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'GLTSCR1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.231 (Fisher's exact test), Q value = 0.55

Table S17691.  Gene #1682: 'GLTSCR1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
GLTSCR1 MUTATED 2 1 0 0
GLTSCR1 WILD-TYPE 44 57 64 43
'GLTSCR1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.253 (Fisher's exact test), Q value = 0.58

Table S17692.  Gene #1682: 'GLTSCR1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
GLTSCR1 MUTATED 2 1 0
GLTSCR1 WILD-TYPE 49 82 77
'GLTSCR1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.288 (Fisher's exact test), Q value = 0.62

Table S17693.  Gene #1682: 'GLTSCR1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
GLTSCR1 MUTATED 8 3 1 0
GLTSCR1 WILD-TYPE 170 180 100 20
'GLTSCR1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.118 (Fisher's exact test), Q value = 0.38

Table S17694.  Gene #1682: 'GLTSCR1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
GLTSCR1 MUTATED 2 1 7
GLTSCR1 WILD-TYPE 85 79 93
'GLTSCR1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0528 (Fisher's exact test), Q value = 0.25

Table S17695.  Gene #1682: 'GLTSCR1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
GLTSCR1 MUTATED 0 3 7
GLTSCR1 WILD-TYPE 89 157 131
'GLTSCR1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.272 (Fisher's exact test), Q value = 0.6

Table S17696.  Gene #1682: 'GLTSCR1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
GLTSCR1 MUTATED 7 3 0
GLTSCR1 WILD-TYPE 175 130 72
'GLTSCR1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00303 (Fisher's exact test), Q value = 0.049

Table S17697.  Gene #1682: 'GLTSCR1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
GLTSCR1 MUTATED 1 3 7 1
GLTSCR1 WILD-TYPE 111 93 85 185

Figure S4441.  Get High-res Image Gene #1682: 'GLTSCR1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'GLTSCR1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0297 (Fisher's exact test), Q value = 0.18

Table S17698.  Gene #1682: 'GLTSCR1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
GLTSCR1 MUTATED 2 1 5 1 0 1 2
GLTSCR1 WILD-TYPE 58 49 44 39 63 124 97

Figure S4442.  Get High-res Image Gene #1682: 'GLTSCR1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'GLTSCR1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0961 (Fisher's exact test), Q value = 0.34

Table S17699.  Gene #1682: 'GLTSCR1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
GLTSCR1 MUTATED 7 2 1 2
GLTSCR1 WILD-TYPE 123 76 67 194
'GLTSCR1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.597 (Fisher's exact test), Q value = 0.9

Table S17700.  Gene #1682: 'GLTSCR1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
GLTSCR1 MUTATED 1 2 0 3 4 0 0 1 1
GLTSCR1 WILD-TYPE 39 60 28 77 65 48 43 27 73
'GLTSCR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00052 (Fisher's exact test), Q value = 0.016

Table S17701.  Gene #1682: 'GLTSCR1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
GLTSCR1 MUTATED 0 0 0 4
GLTSCR1 WILD-TYPE 33 31 27 15

Figure S4443.  Get High-res Image Gene #1682: 'GLTSCR1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'GLTSCR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.672 (Fisher's exact test), Q value = 0.95

Table S17702.  Gene #1682: 'GLTSCR1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
GLTSCR1 MUTATED 2 0 2 0
GLTSCR1 WILD-TYPE 52 10 22 22
'DNAJB11 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.639 (Fisher's exact test), Q value = 0.93

Table S17703.  Gene #1683: 'DNAJB11 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
DNAJB11 MUTATED 5 2 2 0
DNAJB11 WILD-TYPE 173 181 99 20
'DNAJB11 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.571 (Fisher's exact test), Q value = 0.88

Table S17704.  Gene #1683: 'DNAJB11 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
DNAJB11 MUTATED 1 3 3
DNAJB11 WILD-TYPE 86 77 97
'DNAJB11 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.383 (Fisher's exact test), Q value = 0.71

Table S17705.  Gene #1683: 'DNAJB11 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
DNAJB11 MUTATED 1 2 5
DNAJB11 WILD-TYPE 88 158 133
'DNAJB11 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.289 (Fisher's exact test), Q value = 0.62

Table S17706.  Gene #1683: 'DNAJB11 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
DNAJB11 MUTATED 6 2 0
DNAJB11 WILD-TYPE 176 131 72
'DNAJB11 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.599 (Fisher's exact test), Q value = 0.9

Table S17707.  Gene #1683: 'DNAJB11 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
DNAJB11 MUTATED 2 3 2 2
DNAJB11 WILD-TYPE 110 93 90 184
'DNAJB11 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.11 (Fisher's exact test), Q value = 0.37

Table S17708.  Gene #1683: 'DNAJB11 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
DNAJB11 MUTATED 1 1 3 0 2 0 2
DNAJB11 WILD-TYPE 59 49 46 40 61 125 97
'DNAJB11 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.219 (Fisher's exact test), Q value = 0.53

Table S17709.  Gene #1683: 'DNAJB11 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
DNAJB11 MUTATED 4 2 1 1
DNAJB11 WILD-TYPE 126 76 67 195
'DNAJB11 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.307 (Fisher's exact test), Q value = 0.64

Table S17710.  Gene #1683: 'DNAJB11 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
DNAJB11 MUTATED 0 3 0 1 3 0 1 0 0
DNAJB11 WILD-TYPE 40 59 28 79 66 48 42 28 74
'DNAJB11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0598 (Fisher's exact test), Q value = 0.27

Table S17711.  Gene #1683: 'DNAJB11 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
DNAJB11 MUTATED 0 0 1 2
DNAJB11 WILD-TYPE 33 31 26 17
'DNAJB11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.449 (Fisher's exact test), Q value = 0.77

Table S17712.  Gene #1683: 'DNAJB11 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
DNAJB11 MUTATED 1 0 2 0
DNAJB11 WILD-TYPE 53 10 22 22
'LEPROTL1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0436 (Fisher's exact test), Q value = 0.22

Table S17713.  Gene #1684: 'LEPROTL1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
LEPROTL1 MUTATED 5 0 0 0
LEPROTL1 WILD-TYPE 173 183 101 20

Figure S4444.  Get High-res Image Gene #1684: 'LEPROTL1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'LEPROTL1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0428 (Fisher's exact test), Q value = 0.22

Table S17714.  Gene #1684: 'LEPROTL1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
LEPROTL1 MUTATED 3 0 2
LEPROTL1 WILD-TYPE 86 160 136

Figure S4445.  Get High-res Image Gene #1684: 'LEPROTL1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'LEPROTL1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.851 (Fisher's exact test), Q value = 1

Table S17715.  Gene #1684: 'LEPROTL1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
LEPROTL1 MUTATED 3 1 1
LEPROTL1 WILD-TYPE 179 132 71
'LEPROTL1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.094 (Fisher's exact test), Q value = 0.34

Table S17716.  Gene #1684: 'LEPROTL1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
LEPROTL1 MUTATED 0 0 3 2
LEPROTL1 WILD-TYPE 112 96 89 184
'LEPROTL1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0211 (Fisher's exact test), Q value = 0.15

Table S17717.  Gene #1684: 'LEPROTL1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
LEPROTL1 MUTATED 0 0 3 0 0 0 2
LEPROTL1 WILD-TYPE 60 50 46 40 63 125 97

Figure S4446.  Get High-res Image Gene #1684: 'LEPROTL1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'LEPROTL1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.191 (Fisher's exact test), Q value = 0.49

Table S17718.  Gene #1684: 'LEPROTL1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
LEPROTL1 MUTATED 0 2 0 3
LEPROTL1 WILD-TYPE 130 76 68 193
'LEPROTL1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.199 (Fisher's exact test), Q value = 0.5

Table S17719.  Gene #1684: 'LEPROTL1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
LEPROTL1 MUTATED 0 2 0 0 2 0 0 1 0
LEPROTL1 WILD-TYPE 40 60 28 80 67 48 43 27 74
'OR9Q1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.153 (Fisher's exact test), Q value = 0.44

Table S17720.  Gene #1685: 'OR9Q1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
OR9Q1 MUTATED 4 0 2 0
OR9Q1 WILD-TYPE 174 183 99 20
'OR9Q1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.383 (Fisher's exact test), Q value = 0.71

Table S17721.  Gene #1685: 'OR9Q1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
OR9Q1 MUTATED 1 1 4
OR9Q1 WILD-TYPE 86 79 96
'OR9Q1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.73 (Fisher's exact test), Q value = 1

Table S17722.  Gene #1685: 'OR9Q1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
OR9Q1 MUTATED 2 2 1
OR9Q1 WILD-TYPE 87 158 137
'OR9Q1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S17723.  Gene #1685: 'OR9Q1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
OR9Q1 MUTATED 2 2 1
OR9Q1 WILD-TYPE 180 131 71
'OR9Q1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0491 (Fisher's exact test), Q value = 0.24

Table S17724.  Gene #1685: 'OR9Q1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
OR9Q1 MUTATED 1 3 2 0
OR9Q1 WILD-TYPE 111 93 90 186

Figure S4447.  Get High-res Image Gene #1685: 'OR9Q1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'OR9Q1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00093 (Fisher's exact test), Q value = 0.023

Table S17725.  Gene #1685: 'OR9Q1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
OR9Q1 MUTATED 1 0 4 1 0 0 0
OR9Q1 WILD-TYPE 59 50 45 39 63 125 99

Figure S4448.  Get High-res Image Gene #1685: 'OR9Q1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'OR9Q1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0474 (Fisher's exact test), Q value = 0.23

Table S17726.  Gene #1685: 'OR9Q1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
OR9Q1 MUTATED 4 1 1 0
OR9Q1 WILD-TYPE 126 77 67 196

Figure S4449.  Get High-res Image Gene #1685: 'OR9Q1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'OR9Q1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.159 (Fisher's exact test), Q value = 0.45

Table S17727.  Gene #1685: 'OR9Q1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
OR9Q1 MUTATED 1 1 1 0 3 0 0 0 0
OR9Q1 WILD-TYPE 39 61 27 80 66 48 43 28 74
'OR9Q1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.138 (Fisher's exact test), Q value = 0.41

Table S17728.  Gene #1685: 'OR9Q1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
OR9Q1 MUTATED 1 0 0 2
OR9Q1 WILD-TYPE 32 31 27 17
'OR9Q1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S17729.  Gene #1685: 'OR9Q1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
OR9Q1 MUTATED 2 0 1 0
OR9Q1 WILD-TYPE 52 10 23 22
'ARID4B MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.31 (Fisher's exact test), Q value = 0.64

Table S17730.  Gene #1686: 'ARID4B MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ARID4B MUTATED 1 1 0 2
ARID4B WILD-TYPE 45 57 64 41
'ARID4B MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S17731.  Gene #1686: 'ARID4B MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ARID4B MUTATED 1 2 1
ARID4B WILD-TYPE 50 81 76
'ARID4B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0566 (Fisher's exact test), Q value = 0.26

Table S17732.  Gene #1686: 'ARID4B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ARID4B MUTATED 9 2 1 1
ARID4B WILD-TYPE 169 181 100 19
'ARID4B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.116 (Fisher's exact test), Q value = 0.38

Table S17733.  Gene #1686: 'ARID4B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ARID4B MUTATED 4 0 5
ARID4B WILD-TYPE 83 80 95
'ARID4B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.673 (Fisher's exact test), Q value = 0.95

Table S17734.  Gene #1686: 'ARID4B MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ARID4B MUTATED 3 3 5
ARID4B WILD-TYPE 86 157 133
'ARID4B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.162 (Fisher's exact test), Q value = 0.45

Table S17735.  Gene #1686: 'ARID4B MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ARID4B MUTATED 7 1 3
ARID4B WILD-TYPE 175 132 69
'ARID4B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.113 (Fisher's exact test), Q value = 0.37

Table S17736.  Gene #1686: 'ARID4B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ARID4B MUTATED 1 2 6 4
ARID4B WILD-TYPE 111 94 86 182
'ARID4B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0583 (Fisher's exact test), Q value = 0.26

Table S17737.  Gene #1686: 'ARID4B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ARID4B MUTATED 4 0 4 1 1 2 1
ARID4B WILD-TYPE 56 50 45 39 62 123 98
'ARID4B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.387 (Fisher's exact test), Q value = 0.71

Table S17738.  Gene #1686: 'ARID4B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ARID4B MUTATED 6 2 1 3
ARID4B WILD-TYPE 124 76 67 193
'ARID4B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.56 (Fisher's exact test), Q value = 0.87

Table S17739.  Gene #1686: 'ARID4B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ARID4B MUTATED 3 3 0 2 2 1 0 0 1
ARID4B WILD-TYPE 37 59 28 78 67 47 43 28 73
'ARID4B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.137 (Fisher's exact test), Q value = 0.41

Table S17740.  Gene #1686: 'ARID4B MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
ARID4B MUTATED 1 0 0 2
ARID4B WILD-TYPE 32 31 27 17
'ARID4B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S17741.  Gene #1686: 'ARID4B MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
ARID4B MUTATED 2 0 1 0
ARID4B WILD-TYPE 52 10 23 22
'ABHD2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0168 (Fisher's exact test), Q value = 0.13

Table S17742.  Gene #1687: 'ABHD2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ABHD2 MUTATED 1 0 0 3
ABHD2 WILD-TYPE 45 58 64 40

Figure S4450.  Get High-res Image Gene #1687: 'ABHD2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'ABHD2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0388 (Fisher's exact test), Q value = 0.21

Table S17743.  Gene #1687: 'ABHD2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ABHD2 MUTATED 3 0 1
ABHD2 WILD-TYPE 48 83 76

Figure S4451.  Get High-res Image Gene #1687: 'ABHD2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'ABHD2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.287 (Fisher's exact test), Q value = 0.62

Table S17744.  Gene #1687: 'ABHD2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ABHD2 MUTATED 8 3 1 0
ABHD2 WILD-TYPE 170 180 100 20
'ABHD2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.818 (Fisher's exact test), Q value = 1

Table S17745.  Gene #1687: 'ABHD2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ABHD2 MUTATED 2 2 4
ABHD2 WILD-TYPE 85 78 96
'ABHD2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.536 (Fisher's exact test), Q value = 0.86

Table S17746.  Gene #1687: 'ABHD2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ABHD2 MUTATED 1 5 2
ABHD2 WILD-TYPE 88 155 136
'ABHD2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.64 (Fisher's exact test), Q value = 0.93

Table S17747.  Gene #1687: 'ABHD2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ABHD2 MUTATED 3 4 1
ABHD2 WILD-TYPE 179 129 71
'ABHD2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.876 (Fisher's exact test), Q value = 1

Table S17748.  Gene #1687: 'ABHD2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ABHD2 MUTATED 4 2 2 4
ABHD2 WILD-TYPE 108 94 90 182
'ABHD2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0438 (Fisher's exact test), Q value = 0.22

Table S17749.  Gene #1687: 'ABHD2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ABHD2 MUTATED 3 0 3 1 1 0 4
ABHD2 WILD-TYPE 57 50 46 39 62 125 95

Figure S4452.  Get High-res Image Gene #1687: 'ABHD2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ABHD2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.712 (Fisher's exact test), Q value = 0.98

Table S17750.  Gene #1687: 'ABHD2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ABHD2 MUTATED 5 1 1 4
ABHD2 WILD-TYPE 125 77 67 192
'ABHD2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0206 (Fisher's exact test), Q value = 0.14

Table S17751.  Gene #1687: 'ABHD2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ABHD2 MUTATED 1 0 2 1 5 0 2 0 0
ABHD2 WILD-TYPE 39 62 26 79 64 48 41 28 74

Figure S4453.  Get High-res Image Gene #1687: 'ABHD2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'ABHD2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.136 (Fisher's exact test), Q value = 0.41

Table S17752.  Gene #1687: 'ABHD2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
ABHD2 MUTATED 1 0 0 2
ABHD2 WILD-TYPE 32 31 27 17
'ABHD2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S17753.  Gene #1687: 'ABHD2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
ABHD2 MUTATED 2 0 1 0
ABHD2 WILD-TYPE 52 10 23 22
'HIST1H1B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0664 (Fisher's exact test), Q value = 0.28

Table S17754.  Gene #1688: 'HIST1H1B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
HIST1H1B MUTATED 6 0 2 0
HIST1H1B WILD-TYPE 172 183 99 20
'HIST1H1B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.891 (Fisher's exact test), Q value = 1

Table S17755.  Gene #1688: 'HIST1H1B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
HIST1H1B MUTATED 3 2 2
HIST1H1B WILD-TYPE 84 78 98
'HIST1H1B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.239 (Fisher's exact test), Q value = 0.56

Table S17756.  Gene #1688: 'HIST1H1B MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
HIST1H1B MUTATED 0 2 4
HIST1H1B WILD-TYPE 89 158 134
'HIST1H1B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.759 (Fisher's exact test), Q value = 1

Table S17757.  Gene #1688: 'HIST1H1B MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
HIST1H1B MUTATED 4 1 1
HIST1H1B WILD-TYPE 178 132 71
'HIST1H1B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.091 (Fisher's exact test), Q value = 0.33

Table S17758.  Gene #1688: 'HIST1H1B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
HIST1H1B MUTATED 1 2 4 1
HIST1H1B WILD-TYPE 111 94 88 185
'HIST1H1B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00802 (Fisher's exact test), Q value = 0.084

Table S17759.  Gene #1688: 'HIST1H1B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
HIST1H1B MUTATED 0 1 4 0 2 0 1
HIST1H1B WILD-TYPE 60 49 45 40 61 125 98

Figure S4454.  Get High-res Image Gene #1688: 'HIST1H1B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'HIST1H1B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0712 (Fisher's exact test), Q value = 0.29

Table S17760.  Gene #1688: 'HIST1H1B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
HIST1H1B MUTATED 4 3 0 1
HIST1H1B WILD-TYPE 126 75 68 195
'HIST1H1B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.291 (Fisher's exact test), Q value = 0.62

Table S17761.  Gene #1688: 'HIST1H1B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
HIST1H1B MUTATED 2 3 0 2 1 0 0 0 0
HIST1H1B WILD-TYPE 38 59 28 78 68 48 43 28 74
'MAGOHB MUTATION STATUS' versus 'CN_CNMF'

P value = 0.222 (Fisher's exact test), Q value = 0.54

Table S17762.  Gene #1689: 'MAGOHB MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
MAGOHB MUTATED 1 1 1 1
MAGOHB WILD-TYPE 177 182 100 19
'MAGOHB MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0606 (Fisher's exact test), Q value = 0.27

Table S17763.  Gene #1689: 'MAGOHB MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
MAGOHB MUTATED 3 0 0
MAGOHB WILD-TYPE 84 80 100
'MAGOHB MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.83 (Fisher's exact test), Q value = 1

Table S17764.  Gene #1689: 'MAGOHB MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
MAGOHB MUTATED 1 1 2
MAGOHB WILD-TYPE 88 159 136
'MAGOHB MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.673 (Fisher's exact test), Q value = 0.96

Table S17765.  Gene #1689: 'MAGOHB MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
MAGOHB MUTATED 3 1 0
MAGOHB WILD-TYPE 179 132 72
'MAGOHB MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0677 (Fisher's exact test), Q value = 0.28

Table S17766.  Gene #1689: 'MAGOHB MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
MAGOHB MUTATED 0 0 3 1
MAGOHB WILD-TYPE 112 96 89 185
'MAGOHB MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0308 (Fisher's exact test), Q value = 0.18

Table S17767.  Gene #1689: 'MAGOHB MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
MAGOHB MUTATED 1 0 2 1 0 0 0
MAGOHB WILD-TYPE 59 50 47 39 63 125 99

Figure S4455.  Get High-res Image Gene #1689: 'MAGOHB MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'MAGOHB MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.346 (Fisher's exact test), Q value = 0.67

Table S17768.  Gene #1689: 'MAGOHB MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
MAGOHB MUTATED 1 2 0 1
MAGOHB WILD-TYPE 129 76 68 195
'MAGOHB MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.384 (Fisher's exact test), Q value = 0.71

Table S17769.  Gene #1689: 'MAGOHB MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
MAGOHB MUTATED 1 2 0 0 1 0 0 0 0
MAGOHB WILD-TYPE 39 60 28 80 68 48 43 28 74
'MAGOHB MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.705 (Fisher's exact test), Q value = 0.98

Table S17770.  Gene #1689: 'MAGOHB MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
MAGOHB MUTATED 2 1 0 0
MAGOHB WILD-TYPE 31 30 27 19
'MAGOHB MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.564 (Fisher's exact test), Q value = 0.87

Table S17771.  Gene #1689: 'MAGOHB MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
MAGOHB MUTATED 3 0 0 0
MAGOHB WILD-TYPE 51 10 24 22
'ATL1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0263 (Fisher's exact test), Q value = 0.16

Table S17772.  Gene #1690: 'ATL1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ATL1 MUTATED 3 0 0 2
ATL1 WILD-TYPE 43 58 64 41

Figure S4456.  Get High-res Image Gene #1690: 'ATL1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'ATL1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.255 (Fisher's exact test), Q value = 0.58

Table S17773.  Gene #1690: 'ATL1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ATL1 MUTATED 3 1 1
ATL1 WILD-TYPE 48 82 76
'ATL1 MUTATION STATUS' versus 'CN_CNMF'

P value = 2e-04 (Fisher's exact test), Q value = 0.0083

Table S17774.  Gene #1690: 'ATL1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ATL1 MUTATED 12 0 0 0
ATL1 WILD-TYPE 166 183 101 20

Figure S4457.  Get High-res Image Gene #1690: 'ATL1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ATL1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0187 (Fisher's exact test), Q value = 0.14

Table S17775.  Gene #1690: 'ATL1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ATL1 MUTATED 6 0 2
ATL1 WILD-TYPE 81 80 98

Figure S4458.  Get High-res Image Gene #1690: 'ATL1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'ATL1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.652 (Fisher's exact test), Q value = 0.94

Table S17776.  Gene #1690: 'ATL1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ATL1 MUTATED 2 4 6
ATL1 WILD-TYPE 87 156 132
'ATL1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.582 (Fisher's exact test), Q value = 0.89

Table S17777.  Gene #1690: 'ATL1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ATL1 MUTATED 4 5 3
ATL1 WILD-TYPE 178 128 69
'ATL1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.134 (Fisher's exact test), Q value = 0.41

Table S17778.  Gene #1690: 'ATL1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ATL1 MUTATED 0 2 4 6
ATL1 WILD-TYPE 112 94 88 180
'ATL1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0758 (Fisher's exact test), Q value = 0.3

Table S17779.  Gene #1690: 'ATL1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ATL1 MUTATED 1 1 3 1 1 0 5
ATL1 WILD-TYPE 59 49 46 39 62 125 94
'ATL1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.111 (Fisher's exact test), Q value = 0.37

Table S17780.  Gene #1690: 'ATL1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ATL1 MUTATED 1 3 0 8
ATL1 WILD-TYPE 129 75 68 188
'ATL1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.522 (Fisher's exact test), Q value = 0.84

Table S17781.  Gene #1690: 'ATL1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ATL1 MUTATED 1 4 1 1 2 0 0 1 2
ATL1 WILD-TYPE 39 58 27 79 67 48 43 27 72
'ACRC MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0579 (Fisher's exact test), Q value = 0.26

Table S17782.  Gene #1691: 'ACRC MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ACRC MUTATED 4 0 1 1
ACRC WILD-TYPE 42 58 63 42
'ACRC MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0718 (Fisher's exact test), Q value = 0.29

Table S17783.  Gene #1691: 'ACRC MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ACRC MUTATED 4 1 1
ACRC WILD-TYPE 47 82 76
'ACRC MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0418 (Fisher's exact test), Q value = 0.22

Table S17784.  Gene #1691: 'ACRC MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ACRC MUTATED 7 1 5 1
ACRC WILD-TYPE 171 182 96 19

Figure S4459.  Get High-res Image Gene #1691: 'ACRC MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ACRC MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S17785.  Gene #1691: 'ACRC MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ACRC MUTATED 3 3 4
ACRC WILD-TYPE 84 77 96
'ACRC MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.297 (Fisher's exact test), Q value = 0.63

Table S17786.  Gene #1691: 'ACRC MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ACRC MUTATED 1 5 7
ACRC WILD-TYPE 88 155 131
'ACRC MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.188 (Fisher's exact test), Q value = 0.49

Table S17787.  Gene #1691: 'ACRC MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ACRC MUTATED 4 4 5
ACRC WILD-TYPE 178 129 67
'ACRC MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.426 (Fisher's exact test), Q value = 0.75

Table S17788.  Gene #1691: 'ACRC MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ACRC MUTATED 4 5 1 5
ACRC WILD-TYPE 108 91 91 181
'ACRC MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.338 (Fisher's exact test), Q value = 0.67

Table S17789.  Gene #1691: 'ACRC MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ACRC MUTATED 2 2 2 0 3 1 5
ACRC WILD-TYPE 58 48 47 40 60 124 94
'ACRC MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.227 (Fisher's exact test), Q value = 0.54

Table S17790.  Gene #1691: 'ACRC MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ACRC MUTATED 6 1 0 8
ACRC WILD-TYPE 124 77 68 188
'ACRC MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0417 (Fisher's exact test), Q value = 0.22

Table S17791.  Gene #1691: 'ACRC MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ACRC MUTATED 0 0 3 5 3 1 0 2 1
ACRC WILD-TYPE 40 62 25 75 66 47 43 26 73

Figure S4460.  Get High-res Image Gene #1691: 'ACRC MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'ZNF577 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.013 (Fisher's exact test), Q value = 0.11

Table S17792.  Gene #1692: 'ZNF577 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ZNF577 MUTATED 0 0 1 4
ZNF577 WILD-TYPE 46 58 63 39

Figure S4461.  Get High-res Image Gene #1692: 'ZNF577 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'ZNF577 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.64 (Fisher's exact test), Q value = 0.93

Table S17793.  Gene #1692: 'ZNF577 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ZNF577 MUTATED 2 1 2
ZNF577 WILD-TYPE 49 82 75
'ZNF577 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.123 (Fisher's exact test), Q value = 0.39

Table S17794.  Gene #1692: 'ZNF577 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ZNF577 MUTATED 9 2 2 0
ZNF577 WILD-TYPE 169 181 99 20
'ZNF577 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.143 (Fisher's exact test), Q value = 0.42

Table S17795.  Gene #1692: 'ZNF577 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ZNF577 MUTATED 4 0 4
ZNF577 WILD-TYPE 83 80 96
'ZNF577 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S17796.  Gene #1692: 'ZNF577 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ZNF577 MUTATED 3 5 5
ZNF577 WILD-TYPE 86 155 133
'ZNF577 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.569 (Fisher's exact test), Q value = 0.88

Table S17797.  Gene #1692: 'ZNF577 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ZNF577 MUTATED 6 6 1
ZNF577 WILD-TYPE 176 127 71
'ZNF577 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.434 (Fisher's exact test), Q value = 0.76

Table S17798.  Gene #1692: 'ZNF577 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ZNF577 MUTATED 1 3 4 5
ZNF577 WILD-TYPE 111 93 88 181
'ZNF577 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0534 (Fisher's exact test), Q value = 0.25

Table S17799.  Gene #1692: 'ZNF577 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ZNF577 MUTATED 2 0 3 2 2 0 4
ZNF577 WILD-TYPE 58 50 46 38 61 125 95
'ZNF577 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.509 (Fisher's exact test), Q value = 0.83

Table S17800.  Gene #1692: 'ZNF577 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ZNF577 MUTATED 4 3 0 5
ZNF577 WILD-TYPE 126 75 68 191
'ZNF577 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.136 (Fisher's exact test), Q value = 0.41

Table S17801.  Gene #1692: 'ZNF577 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ZNF577 MUTATED 0 3 2 2 4 0 1 0 0
ZNF577 WILD-TYPE 40 59 26 78 65 48 42 28 74
'ZNF577 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0848 (Fisher's exact test), Q value = 0.31

Table S17802.  Gene #1692: 'ZNF577 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
ZNF577 MUTATED 0 1 0 2
ZNF577 WILD-TYPE 33 30 27 17
'ZNF577 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.563 (Fisher's exact test), Q value = 0.87

Table S17803.  Gene #1692: 'ZNF577 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
ZNF577 MUTATED 3 0 0 0
ZNF577 WILD-TYPE 51 10 24 22
'POPDC3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.309 (Fisher's exact test), Q value = 0.64

Table S17804.  Gene #1693: 'POPDC3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
POPDC3 MUTATED 1 1 0 2
POPDC3 WILD-TYPE 45 57 64 41
'POPDC3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.29 (Fisher's exact test), Q value = 0.62

Table S17805.  Gene #1693: 'POPDC3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
POPDC3 MUTATED 1 3 0
POPDC3 WILD-TYPE 50 80 77
'POPDC3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0664 (Fisher's exact test), Q value = 0.28

Table S17806.  Gene #1693: 'POPDC3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
POPDC3 MUTATED 6 0 2 0
POPDC3 WILD-TYPE 172 183 99 20
'POPDC3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S17807.  Gene #1693: 'POPDC3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
POPDC3 MUTATED 1 1 1
POPDC3 WILD-TYPE 86 79 99
'POPDC3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.173 (Fisher's exact test), Q value = 0.47

Table S17808.  Gene #1693: 'POPDC3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
POPDC3 MUTATED 1 4 0
POPDC3 WILD-TYPE 88 156 138
'POPDC3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.344 (Fisher's exact test), Q value = 0.67

Table S17809.  Gene #1693: 'POPDC3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
POPDC3 MUTATED 1 3 1
POPDC3 WILD-TYPE 181 130 71
'POPDC3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.613 (Fisher's exact test), Q value = 0.91

Table S17810.  Gene #1693: 'POPDC3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
POPDC3 MUTATED 2 2 0 4
POPDC3 WILD-TYPE 110 94 92 182
'POPDC3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.323 (Fisher's exact test), Q value = 0.65

Table S17811.  Gene #1693: 'POPDC3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
POPDC3 MUTATED 1 3 0 0 0 2 2
POPDC3 WILD-TYPE 59 47 49 40 63 123 97
'POPDC3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.954 (Fisher's exact test), Q value = 1

Table S17812.  Gene #1693: 'POPDC3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
POPDC3 MUTATED 3 1 1 3
POPDC3 WILD-TYPE 127 77 67 193
'POPDC3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.286 (Fisher's exact test), Q value = 0.61

Table S17813.  Gene #1693: 'POPDC3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
POPDC3 MUTATED 1 0 2 3 1 0 0 0 1
POPDC3 WILD-TYPE 39 62 26 77 68 48 43 28 73
'ESR1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0696 (Fisher's exact test), Q value = 0.28

Table S17814.  Gene #1694: 'ESR1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ESR1 MUTATED 3 0 2 4
ESR1 WILD-TYPE 43 58 62 39
'ESR1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00302 (Fisher's exact test), Q value = 0.049

Table S17815.  Gene #1694: 'ESR1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ESR1 MUTATED 6 3 0
ESR1 WILD-TYPE 45 80 77

Figure S4462.  Get High-res Image Gene #1694: 'ESR1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'ESR1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00043 (Fisher's exact test), Q value = 0.014

Table S17816.  Gene #1694: 'ESR1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ESR1 MUTATED 16 1 3 0
ESR1 WILD-TYPE 162 182 98 20

Figure S4463.  Get High-res Image Gene #1694: 'ESR1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ESR1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.31 (Fisher's exact test), Q value = 0.64

Table S17817.  Gene #1694: 'ESR1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ESR1 MUTATED 5 1 4
ESR1 WILD-TYPE 82 79 96
'ESR1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.349 (Fisher's exact test), Q value = 0.68

Table S17818.  Gene #1694: 'ESR1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ESR1 MUTATED 3 5 9
ESR1 WILD-TYPE 86 155 129
'ESR1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.642 (Fisher's exact test), Q value = 0.93

Table S17819.  Gene #1694: 'ESR1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ESR1 MUTATED 10 4 3
ESR1 WILD-TYPE 172 129 69
'ESR1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.17 (Fisher's exact test), Q value = 0.47

Table S17820.  Gene #1694: 'ESR1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ESR1 MUTATED 1 6 4 9
ESR1 WILD-TYPE 111 90 88 177
'ESR1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S17821.  Gene #1694: 'ESR1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ESR1 MUTATED 0 0 9 1 0 2 8
ESR1 WILD-TYPE 60 50 40 39 63 123 91

Figure S4464.  Get High-res Image Gene #1694: 'ESR1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ESR1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.194 (Fisher's exact test), Q value = 0.5

Table S17822.  Gene #1694: 'ESR1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ESR1 MUTATED 4 3 0 11
ESR1 WILD-TYPE 126 75 68 185
'ESR1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0192 (Fisher's exact test), Q value = 0.14

Table S17823.  Gene #1694: 'ESR1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ESR1 MUTATED 1 4 1 0 8 1 0 1 2
ESR1 WILD-TYPE 39 58 27 80 61 47 43 27 72

Figure S4465.  Get High-res Image Gene #1694: 'ESR1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'ESR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.36 (Fisher's exact test), Q value = 0.69

Table S17824.  Gene #1694: 'ESR1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
ESR1 MUTATED 1 1 0 2
ESR1 WILD-TYPE 32 30 27 17
'ESR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.868 (Fisher's exact test), Q value = 1

Table S17825.  Gene #1694: 'ESR1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
ESR1 MUTATED 3 0 1 0
ESR1 WILD-TYPE 51 10 23 22
'SLC25A40 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00813 (Fisher's exact test), Q value = 0.084

Table S17826.  Gene #1695: 'SLC25A40 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
SLC25A40 MUTATED 0 0 0 3
SLC25A40 WILD-TYPE 46 58 64 40

Figure S4466.  Get High-res Image Gene #1695: 'SLC25A40 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'SLC25A40 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S17827.  Gene #1695: 'SLC25A40 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
SLC25A40 MUTATED 1 1 1
SLC25A40 WILD-TYPE 50 82 76
'SLC25A40 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0432 (Fisher's exact test), Q value = 0.22

Table S17828.  Gene #1695: 'SLC25A40 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
SLC25A40 MUTATED 5 0 0 0
SLC25A40 WILD-TYPE 173 183 101 20

Figure S4467.  Get High-res Image Gene #1695: 'SLC25A40 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'SLC25A40 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.633 (Fisher's exact test), Q value = 0.93

Table S17829.  Gene #1695: 'SLC25A40 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
SLC25A40 MUTATED 0 3 2
SLC25A40 WILD-TYPE 89 157 136
'SLC25A40 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.594 (Fisher's exact test), Q value = 0.9

Table S17830.  Gene #1695: 'SLC25A40 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
SLC25A40 MUTATED 2 3 0
SLC25A40 WILD-TYPE 180 130 72
'SLC25A40 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.687 (Fisher's exact test), Q value = 0.97

Table S17831.  Gene #1695: 'SLC25A40 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
SLC25A40 MUTATED 0 1 1 3
SLC25A40 WILD-TYPE 112 95 91 183
'SLC25A40 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.455 (Fisher's exact test), Q value = 0.78

Table S17832.  Gene #1695: 'SLC25A40 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
SLC25A40 MUTATED 1 0 1 0 1 0 2
SLC25A40 WILD-TYPE 59 50 48 40 62 125 97
'SLC25A40 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S17833.  Gene #1695: 'SLC25A40 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
SLC25A40 MUTATED 1 1 0 2
SLC25A40 WILD-TYPE 129 77 68 194
'SLC25A40 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.283 (Fisher's exact test), Q value = 0.61

Table S17834.  Gene #1695: 'SLC25A40 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
SLC25A40 MUTATED 0 1 1 0 2 0 0 0 0
SLC25A40 WILD-TYPE 40 61 27 80 67 48 43 28 74
'DHX32 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.119 (Fisher's exact test), Q value = 0.38

Table S17835.  Gene #1696: 'DHX32 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
DHX32 MUTATED 2 0 0 1
DHX32 WILD-TYPE 44 58 64 42
'DHX32 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.184 (Fisher's exact test), Q value = 0.48

Table S17836.  Gene #1696: 'DHX32 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
DHX32 MUTATED 2 0 1
DHX32 WILD-TYPE 49 83 76
'DHX32 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.483 (Fisher's exact test), Q value = 0.81

Table S17837.  Gene #1696: 'DHX32 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
DHX32 MUTATED 7 4 1 0
DHX32 WILD-TYPE 171 179 100 20
'DHX32 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0954 (Fisher's exact test), Q value = 0.34

Table S17838.  Gene #1696: 'DHX32 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
DHX32 MUTATED 5 0 4
DHX32 WILD-TYPE 82 80 96
'DHX32 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.39 (Fisher's exact test), Q value = 0.72

Table S17839.  Gene #1696: 'DHX32 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
DHX32 MUTATED 1 4 6
DHX32 WILD-TYPE 88 156 132
'DHX32 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.787 (Fisher's exact test), Q value = 1

Table S17840.  Gene #1696: 'DHX32 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
DHX32 MUTATED 5 5 1
DHX32 WILD-TYPE 177 128 71
'DHX32 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0279 (Fisher's exact test), Q value = 0.17

Table S17841.  Gene #1696: 'DHX32 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
DHX32 MUTATED 0 4 5 3
DHX32 WILD-TYPE 112 92 87 183

Figure S4468.  Get High-res Image Gene #1696: 'DHX32 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'DHX32 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.116 (Fisher's exact test), Q value = 0.38

Table S17842.  Gene #1696: 'DHX32 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
DHX32 MUTATED 2 3 2 1 2 0 2
DHX32 WILD-TYPE 58 47 47 39 61 125 97
'DHX32 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.598 (Fisher's exact test), Q value = 0.9

Table S17843.  Gene #1696: 'DHX32 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
DHX32 MUTATED 4 2 0 6
DHX32 WILD-TYPE 126 76 68 190
'DHX32 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0417 (Fisher's exact test), Q value = 0.22

Table S17844.  Gene #1696: 'DHX32 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
DHX32 MUTATED 0 2 1 0 5 0 3 0 1
DHX32 WILD-TYPE 40 60 27 80 64 48 40 28 73

Figure S4469.  Get High-res Image Gene #1696: 'DHX32 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'DHX32 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.358 (Fisher's exact test), Q value = 0.69

Table S17845.  Gene #1696: 'DHX32 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
DHX32 MUTATED 1 1 0 2
DHX32 WILD-TYPE 32 30 27 17
'DHX32 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.869 (Fisher's exact test), Q value = 1

Table S17846.  Gene #1696: 'DHX32 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
DHX32 MUTATED 3 0 1 0
DHX32 WILD-TYPE 51 10 23 22
'BFSP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.637 (Fisher's exact test), Q value = 0.93

Table S17847.  Gene #1697: 'BFSP1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
BFSP1 MUTATED 5 2 2 0
BFSP1 WILD-TYPE 173 181 99 20
'BFSP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.202 (Fisher's exact test), Q value = 0.51

Table S17848.  Gene #1697: 'BFSP1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
BFSP1 MUTATED 3 0 4
BFSP1 WILD-TYPE 84 80 96
'BFSP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.389 (Fisher's exact test), Q value = 0.72

Table S17849.  Gene #1697: 'BFSP1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
BFSP1 MUTATED 3 3 1
BFSP1 WILD-TYPE 86 157 137
'BFSP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.884 (Fisher's exact test), Q value = 1

Table S17850.  Gene #1697: 'BFSP1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
BFSP1 MUTATED 3 3 1
BFSP1 WILD-TYPE 179 130 71
'BFSP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.584 (Fisher's exact test), Q value = 0.89

Table S17851.  Gene #1697: 'BFSP1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
BFSP1 MUTATED 2 2 3 2
BFSP1 WILD-TYPE 110 94 89 184
'BFSP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0785 (Fisher's exact test), Q value = 0.3

Table S17852.  Gene #1697: 'BFSP1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
BFSP1 MUTATED 2 1 3 0 2 1 0
BFSP1 WILD-TYPE 58 49 46 40 61 124 99
'BFSP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.188 (Fisher's exact test), Q value = 0.49

Table S17853.  Gene #1697: 'BFSP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
BFSP1 MUTATED 5 2 0 2
BFSP1 WILD-TYPE 125 76 68 194
'BFSP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.717 (Fisher's exact test), Q value = 0.99

Table S17854.  Gene #1697: 'BFSP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
BFSP1 MUTATED 1 2 1 2 2 0 1 0 0
BFSP1 WILD-TYPE 39 60 27 78 67 48 42 28 74
'BFSP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.491 (Fisher's exact test), Q value = 0.82

Table S17855.  Gene #1697: 'BFSP1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
BFSP1 MUTATED 3 1 0 1
BFSP1 WILD-TYPE 30 30 27 18
'BFSP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.265 (Fisher's exact test), Q value = 0.59

Table S17856.  Gene #1697: 'BFSP1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
BFSP1 MUTATED 5 0 0 0
BFSP1 WILD-TYPE 49 10 24 22
'CLEC1A MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.31 (Fisher's exact test), Q value = 0.64

Table S17857.  Gene #1698: 'CLEC1A MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
CLEC1A MUTATED 1 1 0 2
CLEC1A WILD-TYPE 45 57 64 41
'CLEC1A MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S17858.  Gene #1698: 'CLEC1A MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
CLEC1A MUTATED 1 2 1
CLEC1A WILD-TYPE 50 81 76
'CLEC1A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0628 (Fisher's exact test), Q value = 0.27

Table S17859.  Gene #1698: 'CLEC1A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
CLEC1A MUTATED 8 1 1 0
CLEC1A WILD-TYPE 170 182 100 20
'CLEC1A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.877 (Fisher's exact test), Q value = 1

Table S17860.  Gene #1698: 'CLEC1A MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
CLEC1A MUTATED 2 1 3
CLEC1A WILD-TYPE 85 79 97
'CLEC1A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.175 (Fisher's exact test), Q value = 0.47

Table S17861.  Gene #1698: 'CLEC1A MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
CLEC1A MUTATED 0 3 5
CLEC1A WILD-TYPE 89 157 133
'CLEC1A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.562 (Fisher's exact test), Q value = 0.87

Table S17862.  Gene #1698: 'CLEC1A MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
CLEC1A MUTATED 5 3 0
CLEC1A WILD-TYPE 177 130 72
'CLEC1A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.688 (Fisher's exact test), Q value = 0.97

Table S17863.  Gene #1698: 'CLEC1A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
CLEC1A MUTATED 1 2 3 4
CLEC1A WILD-TYPE 111 94 89 182
'CLEC1A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.372 (Fisher's exact test), Q value = 0.7

Table S17864.  Gene #1698: 'CLEC1A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
CLEC1A MUTATED 2 1 3 0 1 1 2
CLEC1A WILD-TYPE 58 49 46 40 62 124 97
'CLEC1A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S17865.  Gene #1698: 'CLEC1A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
CLEC1A MUTATED 3 2 1 4
CLEC1A WILD-TYPE 127 76 67 192
'CLEC1A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.528 (Fisher's exact test), Q value = 0.85

Table S17866.  Gene #1698: 'CLEC1A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
CLEC1A MUTATED 0 2 1 1 2 1 2 1 0
CLEC1A WILD-TYPE 40 60 27 79 67 47 41 27 74
'CLEC1A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.137 (Fisher's exact test), Q value = 0.41

Table S17867.  Gene #1698: 'CLEC1A MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
CLEC1A MUTATED 1 0 0 2
CLEC1A WILD-TYPE 32 31 27 17
'CLEC1A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.841 (Fisher's exact test), Q value = 1

Table S17868.  Gene #1698: 'CLEC1A MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
CLEC1A MUTATED 2 0 0 1
CLEC1A WILD-TYPE 52 10 24 21
'BIRC6 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 6e-05 (Fisher's exact test), Q value = 0.0037

Table S17869.  Gene #1699: 'BIRC6 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
BIRC6 MUTATED 7 0 0 5
BIRC6 WILD-TYPE 39 58 64 38

Figure S4470.  Get High-res Image Gene #1699: 'BIRC6 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'BIRC6 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00502 (Fisher's exact test), Q value = 0.064

Table S17870.  Gene #1699: 'BIRC6 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
BIRC6 MUTATED 8 2 2
BIRC6 WILD-TYPE 43 81 75

Figure S4471.  Get High-res Image Gene #1699: 'BIRC6 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'BIRC6 MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S17871.  Gene #1699: 'BIRC6 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
BIRC6 MUTATED 31 6 1 1
BIRC6 WILD-TYPE 147 177 100 19

Figure S4472.  Get High-res Image Gene #1699: 'BIRC6 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'BIRC6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0316 (Fisher's exact test), Q value = 0.18

Table S17872.  Gene #1699: 'BIRC6 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
BIRC6 MUTATED 15 4 9
BIRC6 WILD-TYPE 72 76 91

Figure S4473.  Get High-res Image Gene #1699: 'BIRC6 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'BIRC6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.005 (Fisher's exact test), Q value = 0.064

Table S17873.  Gene #1699: 'BIRC6 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
BIRC6 MUTATED 4 10 22
BIRC6 WILD-TYPE 85 150 116

Figure S4474.  Get High-res Image Gene #1699: 'BIRC6 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'BIRC6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.18 (Fisher's exact test), Q value = 0.48

Table S17874.  Gene #1699: 'BIRC6 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
BIRC6 MUTATED 22 8 6
BIRC6 WILD-TYPE 160 125 66
'BIRC6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0579 (Fisher's exact test), Q value = 0.26

Table S17875.  Gene #1699: 'BIRC6 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
BIRC6 MUTATED 4 10 12 13
BIRC6 WILD-TYPE 108 86 80 173
'BIRC6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 3e-05 (Fisher's exact test), Q value = 0.0022

Table S17876.  Gene #1699: 'BIRC6 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
BIRC6 MUTATED 5 4 12 1 4 1 12
BIRC6 WILD-TYPE 55 46 37 39 59 124 87

Figure S4475.  Get High-res Image Gene #1699: 'BIRC6 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'BIRC6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.396 (Fisher's exact test), Q value = 0.72

Table S17877.  Gene #1699: 'BIRC6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
BIRC6 MUTATED 12 7 2 17
BIRC6 WILD-TYPE 118 71 66 179
'BIRC6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00806 (Fisher's exact test), Q value = 0.084

Table S17878.  Gene #1699: 'BIRC6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
BIRC6 MUTATED 1 10 4 6 11 1 2 1 2
BIRC6 WILD-TYPE 39 52 24 74 58 47 41 27 72

Figure S4476.  Get High-res Image Gene #1699: 'BIRC6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'BIRC6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.198 (Fisher's exact test), Q value = 0.5

Table S17879.  Gene #1699: 'BIRC6 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
BIRC6 MUTATED 4 1 2 4
BIRC6 WILD-TYPE 29 30 25 15
'BIRC6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.442 (Fisher's exact test), Q value = 0.77

Table S17880.  Gene #1699: 'BIRC6 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
BIRC6 MUTATED 6 0 4 1
BIRC6 WILD-TYPE 48 10 20 21
'MTIF2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0651 (Fisher's exact test), Q value = 0.28

Table S17881.  Gene #1700: 'MTIF2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
MTIF2 MUTATED 1 0 0 2
MTIF2 WILD-TYPE 45 58 64 41
'MTIF2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S17882.  Gene #1700: 'MTIF2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
MTIF2 MUTATED 1 1 1
MTIF2 WILD-TYPE 50 82 76
'MTIF2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.146 (Fisher's exact test), Q value = 0.43

Table S17883.  Gene #1700: 'MTIF2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
MTIF2 MUTATED 7 1 3 0
MTIF2 WILD-TYPE 171 182 98 20
'MTIF2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.204 (Fisher's exact test), Q value = 0.51

Table S17884.  Gene #1700: 'MTIF2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
MTIF2 MUTATED 3 0 4
MTIF2 WILD-TYPE 84 80 96
'MTIF2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.213 (Fisher's exact test), Q value = 0.52

Table S17885.  Gene #1700: 'MTIF2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
MTIF2 MUTATED 0 4 5
MTIF2 WILD-TYPE 89 156 133
'MTIF2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.166 (Fisher's exact test), Q value = 0.46

Table S17886.  Gene #1700: 'MTIF2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
MTIF2 MUTATED 7 2 0
MTIF2 WILD-TYPE 175 131 72
'MTIF2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.171 (Fisher's exact test), Q value = 0.47

Table S17887.  Gene #1700: 'MTIF2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
MTIF2 MUTATED 1 1 5 4
MTIF2 WILD-TYPE 111 95 87 182
'MTIF2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0326 (Fisher's exact test), Q value = 0.18

Table S17888.  Gene #1700: 'MTIF2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
MTIF2 MUTATED 1 0 3 0 3 0 4
MTIF2 WILD-TYPE 59 50 46 40 60 125 95

Figure S4477.  Get High-res Image Gene #1700: 'MTIF2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'MTIF2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S17889.  Gene #1700: 'MTIF2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
MTIF2 MUTATED 3 2 1 5
MTIF2 WILD-TYPE 127 76 67 191
'MTIF2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0706 (Fisher's exact test), Q value = 0.29

Table S17890.  Gene #1700: 'MTIF2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
MTIF2 MUTATED 0 4 2 1 2 0 2 0 0
MTIF2 WILD-TYPE 40 58 26 79 67 48 41 28 74
'MTIF2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.627 (Fisher's exact test), Q value = 0.92

Table S17891.  Gene #1700: 'MTIF2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
MTIF2 MUTATED 0 1 1 1
MTIF2 WILD-TYPE 33 30 26 18
'MTIF2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.195 (Fisher's exact test), Q value = 0.5

Table S17892.  Gene #1700: 'MTIF2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
MTIF2 MUTATED 1 1 0 1
MTIF2 WILD-TYPE 53 9 24 21
'IGDCC3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0459 (Fisher's exact test), Q value = 0.23

Table S17893.  Gene #1701: 'IGDCC3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
IGDCC3 MUTATED 1 1 1 5
IGDCC3 WILD-TYPE 45 57 63 38

Figure S4478.  Get High-res Image Gene #1701: 'IGDCC3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'IGDCC3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.529 (Fisher's exact test), Q value = 0.85

Table S17894.  Gene #1701: 'IGDCC3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
IGDCC3 MUTATED 3 2 3
IGDCC3 WILD-TYPE 48 81 74
'IGDCC3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.48 (Fisher's exact test), Q value = 0.81

Table S17895.  Gene #1701: 'IGDCC3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
IGDCC3 MUTATED 7 4 1 0
IGDCC3 WILD-TYPE 171 179 100 20
'IGDCC3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.556 (Fisher's exact test), Q value = 0.87

Table S17896.  Gene #1701: 'IGDCC3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
IGDCC3 MUTATED 2 0 2
IGDCC3 WILD-TYPE 85 80 98
'IGDCC3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.909 (Fisher's exact test), Q value = 1

Table S17897.  Gene #1701: 'IGDCC3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
IGDCC3 MUTATED 2 3 4
IGDCC3 WILD-TYPE 87 157 134
'IGDCC3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.911 (Fisher's exact test), Q value = 1

Table S17898.  Gene #1701: 'IGDCC3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
IGDCC3 MUTATED 4 3 2
IGDCC3 WILD-TYPE 178 130 70
'IGDCC3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.38 (Fisher's exact test), Q value = 0.71

Table S17899.  Gene #1701: 'IGDCC3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
IGDCC3 MUTATED 1 4 1 6
IGDCC3 WILD-TYPE 111 92 91 180
'IGDCC3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.42 (Fisher's exact test), Q value = 0.75

Table S17900.  Gene #1701: 'IGDCC3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
IGDCC3 MUTATED 1 1 3 0 0 3 4
IGDCC3 WILD-TYPE 59 49 46 40 63 122 95
'IGDCC3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.599 (Fisher's exact test), Q value = 0.9

Table S17901.  Gene #1701: 'IGDCC3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
IGDCC3 MUTATED 2 1 3 5
IGDCC3 WILD-TYPE 128 77 65 191
'IGDCC3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.381 (Fisher's exact test), Q value = 0.71

Table S17902.  Gene #1701: 'IGDCC3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
IGDCC3 MUTATED 0 1 0 1 4 0 1 0 4
IGDCC3 WILD-TYPE 40 61 28 79 65 48 42 28 70
'IGDCC3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.781 (Fisher's exact test), Q value = 1

Table S17903.  Gene #1701: 'IGDCC3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
IGDCC3 MUTATED 1 0 1 1
IGDCC3 WILD-TYPE 32 31 26 18
'IGDCC3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.446 (Fisher's exact test), Q value = 0.77

Table S17904.  Gene #1701: 'IGDCC3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
IGDCC3 MUTATED 1 0 2 0
IGDCC3 WILD-TYPE 53 10 22 22
'ZNF124 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0049 (Fisher's exact test), Q value = 0.063

Table S17905.  Gene #1702: 'ZNF124 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ZNF124 MUTATED 8 0 0 0
ZNF124 WILD-TYPE 170 183 101 20

Figure S4479.  Get High-res Image Gene #1702: 'ZNF124 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ZNF124 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.18 (Fisher's exact test), Q value = 0.48

Table S17906.  Gene #1702: 'ZNF124 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ZNF124 MUTATED 4 0 3
ZNF124 WILD-TYPE 83 80 97
'ZNF124 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.176 (Fisher's exact test), Q value = 0.48

Table S17907.  Gene #1702: 'ZNF124 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ZNF124 MUTATED 0 3 5
ZNF124 WILD-TYPE 89 157 133
'ZNF124 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S17908.  Gene #1702: 'ZNF124 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ZNF124 MUTATED 4 3 1
ZNF124 WILD-TYPE 178 130 71
'ZNF124 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.082 (Fisher's exact test), Q value = 0.31

Table S17909.  Gene #1702: 'ZNF124 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ZNF124 MUTATED 0 4 2 2
ZNF124 WILD-TYPE 112 92 90 184
'ZNF124 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0153 (Fisher's exact test), Q value = 0.12

Table S17910.  Gene #1702: 'ZNF124 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ZNF124 MUTATED 0 1 4 0 1 0 2
ZNF124 WILD-TYPE 60 49 45 40 62 125 97

Figure S4480.  Get High-res Image Gene #1702: 'ZNF124 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ZNF124 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.383 (Fisher's exact test), Q value = 0.71

Table S17911.  Gene #1702: 'ZNF124 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ZNF124 MUTATED 4 1 0 2
ZNF124 WILD-TYPE 126 77 68 194
'ZNF124 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.907 (Fisher's exact test), Q value = 1

Table S17912.  Gene #1702: 'ZNF124 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ZNF124 MUTATED 1 2 0 1 2 0 0 0 1
ZNF124 WILD-TYPE 39 60 28 79 67 48 43 28 73
'SLC38A5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.906 (Fisher's exact test), Q value = 1

Table S17913.  Gene #1703: 'SLC38A5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
SLC38A5 MUTATED 3 2 1 0
SLC38A5 WILD-TYPE 175 181 100 20
'SLC38A5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.196 (Fisher's exact test), Q value = 0.5

Table S17914.  Gene #1703: 'SLC38A5 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
SLC38A5 MUTATED 1 0 4
SLC38A5 WILD-TYPE 86 80 96
'SLC38A5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S17915.  Gene #1703: 'SLC38A5 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
SLC38A5 MUTATED 1 2 1
SLC38A5 WILD-TYPE 88 158 137
'SLC38A5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.826 (Fisher's exact test), Q value = 1

Table S17916.  Gene #1703: 'SLC38A5 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
SLC38A5 MUTATED 2 2 0
SLC38A5 WILD-TYPE 180 131 72
'SLC38A5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0352 (Fisher's exact test), Q value = 0.19

Table S17917.  Gene #1703: 'SLC38A5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
SLC38A5 MUTATED 0 4 1 1
SLC38A5 WILD-TYPE 112 92 91 185

Figure S4481.  Get High-res Image Gene #1703: 'SLC38A5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'SLC38A5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00208 (Fisher's exact test), Q value = 0.038

Table S17918.  Gene #1703: 'SLC38A5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
SLC38A5 MUTATED 0 0 4 1 0 0 1
SLC38A5 WILD-TYPE 60 50 45 39 63 125 98

Figure S4482.  Get High-res Image Gene #1703: 'SLC38A5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'SLC38A5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.183 (Fisher's exact test), Q value = 0.48

Table S17919.  Gene #1703: 'SLC38A5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
SLC38A5 MUTATED 4 1 0 1
SLC38A5 WILD-TYPE 126 77 68 195
'SLC38A5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.656 (Fisher's exact test), Q value = 0.94

Table S17920.  Gene #1703: 'SLC38A5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
SLC38A5 MUTATED 1 2 0 1 2 0 0 0 0
SLC38A5 WILD-TYPE 39 60 28 79 67 48 43 28 74
'C15ORF33 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.134 (Fisher's exact test), Q value = 0.41

Table S17921.  Gene #1704: 'C15ORF33 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
C15ORF33 MUTATED 1 0 1 3
C15ORF33 WILD-TYPE 45 58 63 40
'C15ORF33 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.114 (Fisher's exact test), Q value = 0.37

Table S17922.  Gene #1704: 'C15ORF33 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
C15ORF33 MUTATED 2 0 3
C15ORF33 WILD-TYPE 49 83 74
'C15ORF33 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0513 (Fisher's exact test), Q value = 0.24

Table S17923.  Gene #1704: 'C15ORF33 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
C15ORF33 MUTATED 9 3 0 0
C15ORF33 WILD-TYPE 169 180 101 20
'C15ORF33 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.444 (Fisher's exact test), Q value = 0.77

Table S17924.  Gene #1704: 'C15ORF33 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
C15ORF33 MUTATED 4 1 2
C15ORF33 WILD-TYPE 83 79 98
'C15ORF33 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S17925.  Gene #1704: 'C15ORF33 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
C15ORF33 MUTATED 2 4 4
C15ORF33 WILD-TYPE 87 156 134
'C15ORF33 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.585 (Fisher's exact test), Q value = 0.89

Table S17926.  Gene #1704: 'C15ORF33 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
C15ORF33 MUTATED 4 3 3
C15ORF33 WILD-TYPE 178 130 69
'C15ORF33 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.489 (Fisher's exact test), Q value = 0.82

Table S17927.  Gene #1704: 'C15ORF33 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
C15ORF33 MUTATED 1 4 2 5
C15ORF33 WILD-TYPE 111 92 90 181
'C15ORF33 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.612 (Fisher's exact test), Q value = 0.91

Table S17928.  Gene #1704: 'C15ORF33 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
C15ORF33 MUTATED 1 2 1 1 3 1 3
C15ORF33 WILD-TYPE 59 48 48 39 60 124 96
'C15ORF33 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0475 (Fisher's exact test), Q value = 0.23

Table S17929.  Gene #1704: 'C15ORF33 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
C15ORF33 MUTATED 0 4 1 6
C15ORF33 WILD-TYPE 130 74 67 190

Figure S4483.  Get High-res Image Gene #1704: 'C15ORF33 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'C15ORF33 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.702 (Fisher's exact test), Q value = 0.97

Table S17930.  Gene #1704: 'C15ORF33 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
C15ORF33 MUTATED 1 3 1 1 3 0 1 0 1
C15ORF33 WILD-TYPE 39 59 27 79 66 48 42 28 73
'WEE2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0208 (Fisher's exact test), Q value = 0.15

Table S17931.  Gene #1705: 'WEE2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
WEE2 MUTATED 6 2 0 2
WEE2 WILD-TYPE 172 181 101 18

Figure S4484.  Get High-res Image Gene #1705: 'WEE2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'WEE2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S17932.  Gene #1705: 'WEE2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
WEE2 MUTATED 3 2 3
WEE2 WILD-TYPE 84 78 97
'WEE2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0813 (Fisher's exact test), Q value = 0.31

Table S17933.  Gene #1705: 'WEE2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
WEE2 MUTATED 1 1 6
WEE2 WILD-TYPE 88 159 132
'WEE2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.328 (Fisher's exact test), Q value = 0.66

Table S17934.  Gene #1705: 'WEE2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
WEE2 MUTATED 6 1 1
WEE2 WILD-TYPE 176 132 71
'WEE2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.309 (Fisher's exact test), Q value = 0.64

Table S17935.  Gene #1705: 'WEE2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
WEE2 MUTATED 3 4 1 2
WEE2 WILD-TYPE 109 92 91 184
'WEE2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0364 (Fisher's exact test), Q value = 0.2

Table S17936.  Gene #1705: 'WEE2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
WEE2 MUTATED 2 0 2 3 1 0 2
WEE2 WILD-TYPE 58 50 47 37 62 125 97

Figure S4485.  Get High-res Image Gene #1705: 'WEE2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'WEE2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.259 (Fisher's exact test), Q value = 0.58

Table S17937.  Gene #1705: 'WEE2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
WEE2 MUTATED 5 1 2 2
WEE2 WILD-TYPE 125 77 66 194
'WEE2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0617 (Fisher's exact test), Q value = 0.27

Table S17938.  Gene #1705: 'WEE2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
WEE2 MUTATED 2 1 2 0 1 2 2 0 0
WEE2 WILD-TYPE 38 61 26 80 68 46 41 28 74
'MAOB MUTATION STATUS' versus 'CN_CNMF'

P value = 0.386 (Fisher's exact test), Q value = 0.71

Table S17939.  Gene #1706: 'MAOB MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
MAOB MUTATED 5 4 0 0
MAOB WILD-TYPE 173 179 101 20
'MAOB MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.636 (Fisher's exact test), Q value = 0.93

Table S17940.  Gene #1706: 'MAOB MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
MAOB MUTATED 2 1 4
MAOB WILD-TYPE 85 79 96
'MAOB MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.831 (Fisher's exact test), Q value = 1

Table S17941.  Gene #1706: 'MAOB MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
MAOB MUTATED 1 4 4
MAOB WILD-TYPE 88 156 134
'MAOB MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.327 (Fisher's exact test), Q value = 0.66

Table S17942.  Gene #1706: 'MAOB MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
MAOB MUTATED 6 1 2
MAOB WILD-TYPE 176 132 70
'MAOB MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.366 (Fisher's exact test), Q value = 0.69

Table S17943.  Gene #1706: 'MAOB MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
MAOB MUTATED 2 4 1 2
MAOB WILD-TYPE 110 92 91 184
'MAOB MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.212 (Fisher's exact test), Q value = 0.52

Table S17944.  Gene #1706: 'MAOB MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
MAOB MUTATED 2 0 3 1 1 1 1
MAOB WILD-TYPE 58 50 46 39 62 124 98
'MAOB MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0163 (Fisher's exact test), Q value = 0.13

Table S17945.  Gene #1706: 'MAOB MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
MAOB MUTATED 4 0 4 1
MAOB WILD-TYPE 126 78 64 195

Figure S4486.  Get High-res Image Gene #1706: 'MAOB MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'MAOB MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.33 (Fisher's exact test), Q value = 0.66

Table S17946.  Gene #1706: 'MAOB MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
MAOB MUTATED 1 1 0 2 2 0 3 0 0
MAOB WILD-TYPE 39 61 28 78 67 48 40 28 74
'MAOB MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.484 (Fisher's exact test), Q value = 0.81

Table S17947.  Gene #1706: 'MAOB MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
MAOB MUTATED 2 0 1 0
MAOB WILD-TYPE 31 31 26 19
'MAOB MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.381 (Fisher's exact test), Q value = 0.71

Table S17948.  Gene #1706: 'MAOB MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
MAOB MUTATED 2 1 0 0
MAOB WILD-TYPE 52 9 24 22
'REL MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.065 (Fisher's exact test), Q value = 0.28

Table S17949.  Gene #1707: 'REL MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
REL MUTATED 1 0 0 2
REL WILD-TYPE 45 58 64 41
'REL MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0128 (Fisher's exact test), Q value = 0.11

Table S17950.  Gene #1707: 'REL MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
REL MUTATED 3 0 0
REL WILD-TYPE 48 83 77

Figure S4487.  Get High-res Image Gene #1707: 'REL MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'REL MUTATION STATUS' versus 'CN_CNMF'

P value = 0.409 (Fisher's exact test), Q value = 0.73

Table S17951.  Gene #1707: 'REL MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
REL MUTATED 7 3 1 0
REL WILD-TYPE 171 180 100 20
'REL MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.221 (Fisher's exact test), Q value = 0.54

Table S17952.  Gene #1707: 'REL MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
REL MUTATED 5 1 2
REL WILD-TYPE 82 79 98
'REL MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.136 (Fisher's exact test), Q value = 0.41

Table S17953.  Gene #1707: 'REL MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
REL MUTATED 3 1 5
REL WILD-TYPE 86 159 133
'REL MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0237 (Fisher's exact test), Q value = 0.16

Table S17954.  Gene #1707: 'REL MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
REL MUTATED 8 0 1
REL WILD-TYPE 174 133 71

Figure S4488.  Get High-res Image Gene #1707: 'REL MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'REL MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0173 (Fisher's exact test), Q value = 0.13

Table S17955.  Gene #1707: 'REL MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
REL MUTATED 0 2 6 3
REL WILD-TYPE 112 94 86 183

Figure S4489.  Get High-res Image Gene #1707: 'REL MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'REL MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0308 (Fisher's exact test), Q value = 0.18

Table S17956.  Gene #1707: 'REL MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
REL MUTATED 1 0 4 1 2 0 3
REL WILD-TYPE 59 50 45 39 61 125 96

Figure S4490.  Get High-res Image Gene #1707: 'REL MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'REL MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.12 (Fisher's exact test), Q value = 0.39

Table S17957.  Gene #1707: 'REL MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
REL MUTATED 2 5 1 3
REL WILD-TYPE 128 73 67 193
'REL MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0183 (Fisher's exact test), Q value = 0.14

Table S17958.  Gene #1707: 'REL MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
REL MUTATED 0 6 0 1 3 0 1 0 0
REL WILD-TYPE 40 56 28 79 66 48 42 28 74

Figure S4491.  Get High-res Image Gene #1707: 'REL MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'REL MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.871 (Fisher's exact test), Q value = 1

Table S17959.  Gene #1707: 'REL MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
REL MUTATED 1 1 0 1
REL WILD-TYPE 32 30 27 18
'REL MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.564 (Fisher's exact test), Q value = 0.87

Table S17960.  Gene #1707: 'REL MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
REL MUTATED 3 0 0 0
REL WILD-TYPE 51 10 24 22
'MMP27 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0316 (Fisher's exact test), Q value = 0.18

Table S17961.  Gene #1708: 'MMP27 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
MMP27 MUTATED 3 0 0 1
MMP27 WILD-TYPE 43 58 64 42

Figure S4492.  Get High-res Image Gene #1708: 'MMP27 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'MMP27 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.554 (Fisher's exact test), Q value = 0.87

Table S17962.  Gene #1708: 'MMP27 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
MMP27 MUTATED 2 1 1
MMP27 WILD-TYPE 49 82 76
'MMP27 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.444 (Fisher's exact test), Q value = 0.77

Table S17963.  Gene #1708: 'MMP27 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
MMP27 MUTATED 4 2 2 1
MMP27 WILD-TYPE 174 181 99 19
'MMP27 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.528 (Fisher's exact test), Q value = 0.85

Table S17964.  Gene #1708: 'MMP27 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
MMP27 MUTATED 3 1 1
MMP27 WILD-TYPE 84 79 99
'MMP27 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.506 (Fisher's exact test), Q value = 0.83

Table S17965.  Gene #1708: 'MMP27 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
MMP27 MUTATED 0 3 3
MMP27 WILD-TYPE 89 157 135
'MMP27 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S17966.  Gene #1708: 'MMP27 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
MMP27 MUTATED 3 2 1
MMP27 WILD-TYPE 179 131 71
'MMP27 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.935 (Fisher's exact test), Q value = 1

Table S17967.  Gene #1708: 'MMP27 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
MMP27 MUTATED 2 1 2 4
MMP27 WILD-TYPE 110 95 90 182
'MMP27 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.712 (Fisher's exact test), Q value = 0.98

Table S17968.  Gene #1708: 'MMP27 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
MMP27 MUTATED 1 1 1 2 1 1 2
MMP27 WILD-TYPE 59 49 48 38 62 124 97
'MMP27 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.402 (Fisher's exact test), Q value = 0.73

Table S17969.  Gene #1708: 'MMP27 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
MMP27 MUTATED 2 3 0 4
MMP27 WILD-TYPE 128 75 68 192
'MMP27 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.186 (Fisher's exact test), Q value = 0.49

Table S17970.  Gene #1708: 'MMP27 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
MMP27 MUTATED 2 3 0 1 3 0 0 0 0
MMP27 WILD-TYPE 38 59 28 79 66 48 43 28 74
'MMP27 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.872 (Fisher's exact test), Q value = 1

Table S17971.  Gene #1708: 'MMP27 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
MMP27 MUTATED 1 1 0 1
MMP27 WILD-TYPE 32 30 27 18
'MMP27 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.564 (Fisher's exact test), Q value = 0.87

Table S17972.  Gene #1708: 'MMP27 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
MMP27 MUTATED 3 0 0 0
MMP27 WILD-TYPE 51 10 24 22
'ZNF7 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0224 (Fisher's exact test), Q value = 0.15

Table S17973.  Gene #1709: 'ZNF7 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ZNF7 MUTATED 2 0 0 3
ZNF7 WILD-TYPE 44 58 64 40

Figure S4493.  Get High-res Image Gene #1709: 'ZNF7 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'ZNF7 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.74 (Fisher's exact test), Q value = 1

Table S17974.  Gene #1709: 'ZNF7 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ZNF7 MUTATED 2 2 1
ZNF7 WILD-TYPE 49 81 76
'ZNF7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0119 (Fisher's exact test), Q value = 0.11

Table S17975.  Gene #1709: 'ZNF7 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ZNF7 MUTATED 11 1 2 0
ZNF7 WILD-TYPE 167 182 99 20

Figure S4494.  Get High-res Image Gene #1709: 'ZNF7 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ZNF7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.127 (Fisher's exact test), Q value = 0.4

Table S17976.  Gene #1709: 'ZNF7 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ZNF7 MUTATED 6 1 2
ZNF7 WILD-TYPE 81 79 98
'ZNF7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.201 (Fisher's exact test), Q value = 0.51

Table S17977.  Gene #1709: 'ZNF7 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ZNF7 MUTATED 1 3 7
ZNF7 WILD-TYPE 88 157 131
'ZNF7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.849 (Fisher's exact test), Q value = 1

Table S17978.  Gene #1709: 'ZNF7 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ZNF7 MUTATED 6 4 1
ZNF7 WILD-TYPE 176 129 71
'ZNF7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.47 (Fisher's exact test), Q value = 0.8

Table S17979.  Gene #1709: 'ZNF7 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ZNF7 MUTATED 1 4 3 6
ZNF7 WILD-TYPE 111 92 89 180
'ZNF7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.292 (Fisher's exact test), Q value = 0.62

Table S17980.  Gene #1709: 'ZNF7 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ZNF7 MUTATED 1 2 3 1 1 1 5
ZNF7 WILD-TYPE 59 48 46 39 62 124 94
'ZNF7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.618 (Fisher's exact test), Q value = 0.92

Table S17981.  Gene #1709: 'ZNF7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ZNF7 MUTATED 2 3 1 7
ZNF7 WILD-TYPE 128 75 67 189
'ZNF7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.805 (Fisher's exact test), Q value = 1

Table S17982.  Gene #1709: 'ZNF7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ZNF7 MUTATED 1 2 2 2 3 0 1 0 2
ZNF7 WILD-TYPE 39 60 26 78 66 48 42 28 72
'ZNF7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.7 (Fisher's exact test), Q value = 0.97

Table S17983.  Gene #1709: 'ZNF7 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
ZNF7 MUTATED 2 1 0 1
ZNF7 WILD-TYPE 31 30 27 18
'ZNF7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S17984.  Gene #1709: 'ZNF7 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
ZNF7 MUTATED 2 0 1 1
ZNF7 WILD-TYPE 52 10 23 21
'LDLRAD3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0227 (Fisher's exact test), Q value = 0.15

Table S17985.  Gene #1710: 'LDLRAD3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
LDLRAD3 MUTATED 6 0 0 0
LDLRAD3 WILD-TYPE 172 183 101 20

Figure S4495.  Get High-res Image Gene #1710: 'LDLRAD3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'LDLRAD3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.393 (Fisher's exact test), Q value = 0.72

Table S17986.  Gene #1710: 'LDLRAD3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
LDLRAD3 MUTATED 1 0 3
LDLRAD3 WILD-TYPE 86 80 97
'LDLRAD3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.732 (Fisher's exact test), Q value = 1

Table S17987.  Gene #1710: 'LDLRAD3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
LDLRAD3 MUTATED 2 2 1
LDLRAD3 WILD-TYPE 87 158 137
'LDLRAD3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0428 (Fisher's exact test), Q value = 0.22

Table S17988.  Gene #1710: 'LDLRAD3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
LDLRAD3 MUTATED 0 3 2
LDLRAD3 WILD-TYPE 182 130 70

Figure S4496.  Get High-res Image Gene #1710: 'LDLRAD3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'LDLRAD3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.241 (Fisher's exact test), Q value = 0.57

Table S17989.  Gene #1710: 'LDLRAD3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
LDLRAD3 MUTATED 0 3 1 2
LDLRAD3 WILD-TYPE 112 93 91 184
'LDLRAD3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0873 (Fisher's exact test), Q value = 0.32

Table S17990.  Gene #1710: 'LDLRAD3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
LDLRAD3 MUTATED 0 1 2 0 0 0 3
LDLRAD3 WILD-TYPE 60 49 47 40 63 125 96
'LDLRAD3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0591 (Fisher's exact test), Q value = 0.27

Table S17991.  Gene #1710: 'LDLRAD3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
LDLRAD3 MUTATED 0 0 0 6
LDLRAD3 WILD-TYPE 130 78 68 190
'LDLRAD3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0576 (Fisher's exact test), Q value = 0.26

Table S17992.  Gene #1710: 'LDLRAD3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
LDLRAD3 MUTATED 0 0 0 0 4 0 0 1 1
LDLRAD3 WILD-TYPE 40 62 28 80 65 48 43 27 73
'HOOK3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.372 (Fisher's exact test), Q value = 0.7

Table S17993.  Gene #1711: 'HOOK3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
HOOK3 MUTATED 2 1 0 1
HOOK3 WILD-TYPE 44 57 64 42
'HOOK3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.178 (Fisher's exact test), Q value = 0.48

Table S17994.  Gene #1711: 'HOOK3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
HOOK3 MUTATED 2 0 2
HOOK3 WILD-TYPE 49 83 75
'HOOK3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0328 (Fisher's exact test), Q value = 0.19

Table S17995.  Gene #1711: 'HOOK3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
HOOK3 MUTATED 9 1 1 0
HOOK3 WILD-TYPE 169 182 100 20

Figure S4497.  Get High-res Image Gene #1711: 'HOOK3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'HOOK3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.18 (Fisher's exact test), Q value = 0.48

Table S17996.  Gene #1711: 'HOOK3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
HOOK3 MUTATED 4 0 3
HOOK3 WILD-TYPE 83 80 97
'HOOK3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.696 (Fisher's exact test), Q value = 0.97

Table S17997.  Gene #1711: 'HOOK3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
HOOK3 MUTATED 1 5 3
HOOK3 WILD-TYPE 88 155 135
'HOOK3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.11 (Fisher's exact test), Q value = 0.37

Table S17998.  Gene #1711: 'HOOK3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
HOOK3 MUTATED 3 6 0
HOOK3 WILD-TYPE 179 127 72
'HOOK3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.138 (Fisher's exact test), Q value = 0.41

Table S17999.  Gene #1711: 'HOOK3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
HOOK3 MUTATED 0 4 3 4
HOOK3 WILD-TYPE 112 92 89 182
'HOOK3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.445 (Fisher's exact test), Q value = 0.77

Table S18000.  Gene #1711: 'HOOK3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
HOOK3 MUTATED 2 1 3 1 1 1 2
HOOK3 WILD-TYPE 58 49 46 39 62 124 97
'HOOK3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.759 (Fisher's exact test), Q value = 1

Table S18001.  Gene #1711: 'HOOK3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
HOOK3 MUTATED 4 2 1 3
HOOK3 WILD-TYPE 126 76 67 193
'HOOK3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.589 (Fisher's exact test), Q value = 0.89

Table S18002.  Gene #1711: 'HOOK3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
HOOK3 MUTATED 1 1 0 1 4 2 0 0 1
HOOK3 WILD-TYPE 39 61 28 79 65 46 43 28 73
'HOOK3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.871 (Fisher's exact test), Q value = 1

Table S18003.  Gene #1711: 'HOOK3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
HOOK3 MUTATED 1 1 0 1
HOOK3 WILD-TYPE 32 30 27 18
'HOOK3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S18004.  Gene #1711: 'HOOK3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
HOOK3 MUTATED 2 0 1 0
HOOK3 WILD-TYPE 52 10 23 22
'NAPA MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.407 (Fisher's exact test), Q value = 0.73

Table S18005.  Gene #1712: 'NAPA MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
NAPA MUTATED 1 0 1 2
NAPA WILD-TYPE 45 58 63 41
'NAPA MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.555 (Fisher's exact test), Q value = 0.87

Table S18006.  Gene #1712: 'NAPA MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
NAPA MUTATED 2 1 1
NAPA WILD-TYPE 49 82 76
'NAPA MUTATION STATUS' versus 'CN_CNMF'

P value = 0.328 (Fisher's exact test), Q value = 0.66

Table S18007.  Gene #1712: 'NAPA MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
NAPA MUTATED 5 1 1 0
NAPA WILD-TYPE 173 182 100 20
'NAPA MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0615 (Fisher's exact test), Q value = 0.27

Table S18008.  Gene #1712: 'NAPA MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
NAPA MUTATED 3 0 0
NAPA WILD-TYPE 84 80 100
'NAPA MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.457 (Fisher's exact test), Q value = 0.78

Table S18009.  Gene #1712: 'NAPA MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
NAPA MUTATED 2 1 2
NAPA WILD-TYPE 87 159 136
'NAPA MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.17 (Fisher's exact test), Q value = 0.47

Table S18010.  Gene #1712: 'NAPA MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
NAPA MUTATED 3 0 2
NAPA WILD-TYPE 179 133 70
'NAPA MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.53 (Fisher's exact test), Q value = 0.85

Table S18011.  Gene #1712: 'NAPA MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
NAPA MUTATED 1 0 2 4
NAPA WILD-TYPE 111 96 90 182
'NAPA MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.519 (Fisher's exact test), Q value = 0.84

Table S18012.  Gene #1712: 'NAPA MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
NAPA MUTATED 0 0 1 0 2 1 3
NAPA WILD-TYPE 60 50 48 40 61 124 96
'NAPA MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S18013.  Gene #1712: 'NAPA MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
NAPA MUTATED 2 1 1 3
NAPA WILD-TYPE 128 77 67 193
'NAPA MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.51 (Fisher's exact test), Q value = 0.83

Table S18014.  Gene #1712: 'NAPA MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
NAPA MUTATED 1 2 1 0 2 0 0 0 1
NAPA WILD-TYPE 39 60 27 80 67 48 43 28 73
'METT10D MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0222 (Fisher's exact test), Q value = 0.15

Table S18015.  Gene #1713: 'METT10D MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
METT10D MUTATED 2 0 0 3
METT10D WILD-TYPE 44 58 64 40

Figure S4498.  Get High-res Image Gene #1713: 'METT10D MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'METT10D MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S18016.  Gene #1713: 'METT10D MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
METT10D MUTATED 1 2 2
METT10D WILD-TYPE 50 81 75
'METT10D MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0295 (Fisher's exact test), Q value = 0.18

Table S18017.  Gene #1713: 'METT10D MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
METT10D MUTATED 9 2 0 0
METT10D WILD-TYPE 169 181 101 20

Figure S4499.  Get High-res Image Gene #1713: 'METT10D MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'METT10D MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.253 (Fisher's exact test), Q value = 0.58

Table S18018.  Gene #1713: 'METT10D MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
METT10D MUTATED 2 0 4
METT10D WILD-TYPE 85 80 96
'METT10D MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.113 (Fisher's exact test), Q value = 0.37

Table S18019.  Gene #1713: 'METT10D MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
METT10D MUTATED 0 6 2
METT10D WILD-TYPE 89 154 136
'METT10D MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.417 (Fisher's exact test), Q value = 0.74

Table S18020.  Gene #1713: 'METT10D MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
METT10D MUTATED 2 4 2
METT10D WILD-TYPE 180 129 70
'METT10D MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.635 (Fisher's exact test), Q value = 0.93

Table S18021.  Gene #1713: 'METT10D MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
METT10D MUTATED 1 2 3 5
METT10D WILD-TYPE 111 94 89 181
'METT10D MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.164 (Fisher's exact test), Q value = 0.46

Table S18022.  Gene #1713: 'METT10D MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
METT10D MUTATED 2 1 3 0 0 1 4
METT10D WILD-TYPE 58 49 46 40 63 124 95
'METT10D MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.126 (Fisher's exact test), Q value = 0.39

Table S18023.  Gene #1713: 'METT10D MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
METT10D MUTATED 3 0 0 8
METT10D WILD-TYPE 127 78 68 188
'METT10D MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00079 (Fisher's exact test), Q value = 0.021

Table S18024.  Gene #1713: 'METT10D MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
METT10D MUTATED 0 1 4 1 5 0 0 0 0
METT10D WILD-TYPE 40 61 24 79 64 48 43 28 74

Figure S4500.  Get High-res Image Gene #1713: 'METT10D MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'PLD5 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.179 (Fisher's exact test), Q value = 0.48

Table S18025.  Gene #1714: 'PLD5 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
PLD5 MUTATED 3 0 1 1
PLD5 WILD-TYPE 43 58 63 42
'PLD5 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0452 (Fisher's exact test), Q value = 0.23

Table S18026.  Gene #1714: 'PLD5 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
PLD5 MUTATED 3 0 2
PLD5 WILD-TYPE 48 83 75

Figure S4501.  Get High-res Image Gene #1714: 'PLD5 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'PLD5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.315 (Fisher's exact test), Q value = 0.64

Table S18027.  Gene #1714: 'PLD5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
PLD5 MUTATED 5 5 3 2
PLD5 WILD-TYPE 173 178 98 18
'PLD5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.851 (Fisher's exact test), Q value = 1

Table S18028.  Gene #1714: 'PLD5 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
PLD5 MUTATED 4 2 4
PLD5 WILD-TYPE 83 78 96
'PLD5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.188 (Fisher's exact test), Q value = 0.49

Table S18029.  Gene #1714: 'PLD5 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
PLD5 MUTATED 0 6 4
PLD5 WILD-TYPE 89 154 134
'PLD5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.841 (Fisher's exact test), Q value = 1

Table S18030.  Gene #1714: 'PLD5 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
PLD5 MUTATED 4 4 2
PLD5 WILD-TYPE 178 129 70
'PLD5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.827 (Fisher's exact test), Q value = 1

Table S18031.  Gene #1714: 'PLD5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
PLD5 MUTATED 4 4 2 5
PLD5 WILD-TYPE 108 92 90 181
'PLD5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0986 (Fisher's exact test), Q value = 0.34

Table S18032.  Gene #1714: 'PLD5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
PLD5 MUTATED 3 0 4 2 2 1 3
PLD5 WILD-TYPE 57 50 45 38 61 124 96
'PLD5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.561 (Fisher's exact test), Q value = 0.87

Table S18033.  Gene #1714: 'PLD5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
PLD5 MUTATED 6 1 2 5
PLD5 WILD-TYPE 124 77 66 191
'PLD5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0301 (Fisher's exact test), Q value = 0.18

Table S18034.  Gene #1714: 'PLD5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
PLD5 MUTATED 1 1 0 3 7 0 2 0 0
PLD5 WILD-TYPE 39 61 28 77 62 48 41 28 74

Figure S4502.  Get High-res Image Gene #1714: 'PLD5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'PLD5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.085 (Fisher's exact test), Q value = 0.32

Table S18035.  Gene #1714: 'PLD5 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
PLD5 MUTATED 0 1 0 2
PLD5 WILD-TYPE 33 30 27 17
'PLD5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.138 (Fisher's exact test), Q value = 0.41

Table S18036.  Gene #1714: 'PLD5 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
PLD5 MUTATED 0 0 2 1
PLD5 WILD-TYPE 54 10 22 21
'SON MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.465 (Fisher's exact test), Q value = 0.79

Table S18037.  Gene #1715: 'SON MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
SON MUTATED 3 2 1 3
SON WILD-TYPE 43 56 63 40
'SON MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0975 (Fisher's exact test), Q value = 0.34

Table S18038.  Gene #1715: 'SON MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
SON MUTATED 5 2 2
SON WILD-TYPE 46 81 75
'SON MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0193 (Fisher's exact test), Q value = 0.14

Table S18039.  Gene #1715: 'SON MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
SON MUTATED 14 3 7 0
SON WILD-TYPE 164 180 94 20

Figure S4503.  Get High-res Image Gene #1715: 'SON MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'SON MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.527 (Fisher's exact test), Q value = 0.85

Table S18040.  Gene #1715: 'SON MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
SON MUTATED 5 3 8
SON WILD-TYPE 82 77 92
'SON MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.639 (Fisher's exact test), Q value = 0.93

Table S18041.  Gene #1715: 'SON MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
SON MUTATED 6 7 9
SON WILD-TYPE 83 153 129
'SON MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.775 (Fisher's exact test), Q value = 1

Table S18042.  Gene #1715: 'SON MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
SON MUTATED 9 9 4
SON WILD-TYPE 173 124 68
'SON MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.441 (Fisher's exact test), Q value = 0.77

Table S18043.  Gene #1715: 'SON MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
SON MUTATED 4 7 6 7
SON WILD-TYPE 108 89 86 179
'SON MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.106 (Fisher's exact test), Q value = 0.36

Table S18044.  Gene #1715: 'SON MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
SON MUTATED 4 3 6 0 2 3 6
SON WILD-TYPE 56 47 43 40 61 122 93
'SON MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.328 (Fisher's exact test), Q value = 0.66

Table S18045.  Gene #1715: 'SON MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
SON MUTATED 8 2 1 12
SON WILD-TYPE 122 76 67 184
'SON MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.281 (Fisher's exact test), Q value = 0.61

Table S18046.  Gene #1715: 'SON MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
SON MUTATED 2 2 1 3 9 1 2 1 2
SON WILD-TYPE 38 60 27 77 60 47 41 27 72
'SON MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00072 (Fisher's exact test), Q value = 0.02

Table S18047.  Gene #1715: 'SON MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
SON MUTATED 0 0 0 4
SON WILD-TYPE 33 31 27 15

Figure S4504.  Get High-res Image Gene #1715: 'SON MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'SON MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.672 (Fisher's exact test), Q value = 0.95

Table S18048.  Gene #1715: 'SON MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
SON MUTATED 2 0 2 0
SON WILD-TYPE 52 10 22 22
'ATP6V0A4 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.113 (Fisher's exact test), Q value = 0.37

Table S18049.  Gene #1716: 'ATP6V0A4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ATP6V0A4 MUTATED 2 0 1 3
ATP6V0A4 WILD-TYPE 44 58 63 40
'ATP6V0A4 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.88 (Fisher's exact test), Q value = 1

Table S18050.  Gene #1716: 'ATP6V0A4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ATP6V0A4 MUTATED 2 2 2
ATP6V0A4 WILD-TYPE 49 81 75
'ATP6V0A4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00089 (Fisher's exact test), Q value = 0.023

Table S18051.  Gene #1716: 'ATP6V0A4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ATP6V0A4 MUTATED 12 1 0 0
ATP6V0A4 WILD-TYPE 166 182 101 20

Figure S4505.  Get High-res Image Gene #1716: 'ATP6V0A4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ATP6V0A4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.205 (Fisher's exact test), Q value = 0.51

Table S18052.  Gene #1716: 'ATP6V0A4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ATP6V0A4 MUTATED 3 0 4
ATP6V0A4 WILD-TYPE 84 80 96
'ATP6V0A4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.713 (Fisher's exact test), Q value = 0.98

Table S18053.  Gene #1716: 'ATP6V0A4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ATP6V0A4 MUTATED 1 5 4
ATP6V0A4 WILD-TYPE 88 155 134
'ATP6V0A4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S18054.  Gene #1716: 'ATP6V0A4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ATP6V0A4 MUTATED 5 3 2
ATP6V0A4 WILD-TYPE 177 130 70
'ATP6V0A4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.283 (Fisher's exact test), Q value = 0.61

Table S18055.  Gene #1716: 'ATP6V0A4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ATP6V0A4 MUTATED 1 2 5 5
ATP6V0A4 WILD-TYPE 111 94 87 181
'ATP6V0A4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0993 (Fisher's exact test), Q value = 0.35

Table S18056.  Gene #1716: 'ATP6V0A4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ATP6V0A4 MUTATED 1 0 5 1 1 2 3
ATP6V0A4 WILD-TYPE 59 50 44 39 62 123 96
'ATP6V0A4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.518 (Fisher's exact test), Q value = 0.84

Table S18057.  Gene #1716: 'ATP6V0A4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ATP6V0A4 MUTATED 3 3 0 6
ATP6V0A4 WILD-TYPE 127 75 68 190
'ATP6V0A4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.196 (Fisher's exact test), Q value = 0.5

Table S18058.  Gene #1716: 'ATP6V0A4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ATP6V0A4 MUTATED 2 4 1 1 3 1 0 0 0
ATP6V0A4 WILD-TYPE 38 58 27 79 66 47 43 28 74
'CACNA1D MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0156 (Fisher's exact test), Q value = 0.12

Table S18059.  Gene #1717: 'CACNA1D MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
CACNA1D MUTATED 1 0 0 3
CACNA1D WILD-TYPE 45 58 64 40

Figure S4506.  Get High-res Image Gene #1717: 'CACNA1D MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'CACNA1D MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.831 (Fisher's exact test), Q value = 1

Table S18060.  Gene #1717: 'CACNA1D MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
CACNA1D MUTATED 1 1 2
CACNA1D WILD-TYPE 50 82 75
'CACNA1D MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S18061.  Gene #1717: 'CACNA1D MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
CACNA1D MUTATED 21 1 1 0
CACNA1D WILD-TYPE 157 182 100 20

Figure S4507.  Get High-res Image Gene #1717: 'CACNA1D MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'CACNA1D MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00564 (Fisher's exact test), Q value = 0.068

Table S18062.  Gene #1717: 'CACNA1D MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
CACNA1D MUTATED 7 0 10
CACNA1D WILD-TYPE 80 80 90

Figure S4508.  Get High-res Image Gene #1717: 'CACNA1D MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'CACNA1D MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.271 (Fisher's exact test), Q value = 0.6

Table S18063.  Gene #1717: 'CACNA1D MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
CACNA1D MUTATED 2 8 10
CACNA1D WILD-TYPE 87 152 128
'CACNA1D MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.514 (Fisher's exact test), Q value = 0.84

Table S18064.  Gene #1717: 'CACNA1D MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
CACNA1D MUTATED 9 9 2
CACNA1D WILD-TYPE 173 124 70
'CACNA1D MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00062 (Fisher's exact test), Q value = 0.018

Table S18065.  Gene #1717: 'CACNA1D MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
CACNA1D MUTATED 0 8 9 6
CACNA1D WILD-TYPE 112 88 83 180

Figure S4509.  Get High-res Image Gene #1717: 'CACNA1D MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'CACNA1D MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S18066.  Gene #1717: 'CACNA1D MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
CACNA1D MUTATED 1 3 13 0 1 1 4
CACNA1D WILD-TYPE 59 47 36 40 62 124 95

Figure S4510.  Get High-res Image Gene #1717: 'CACNA1D MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CACNA1D MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0973 (Fisher's exact test), Q value = 0.34

Table S18067.  Gene #1717: 'CACNA1D MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
CACNA1D MUTATED 9 5 0 8
CACNA1D WILD-TYPE 121 73 68 188
'CACNA1D MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 4e-05 (Fisher's exact test), Q value = 0.0027

Table S18068.  Gene #1717: 'CACNA1D MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
CACNA1D MUTATED 0 8 3 1 9 0 0 0 1
CACNA1D WILD-TYPE 40 54 25 79 60 48 43 28 73

Figure S4511.  Get High-res Image Gene #1717: 'CACNA1D MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'CACNA1D MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 4e-05 (Fisher's exact test), Q value = 0.0027

Table S18069.  Gene #1717: 'CACNA1D MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
CACNA1D MUTATED 2 0 0 7
CACNA1D WILD-TYPE 31 31 27 12

Figure S4512.  Get High-res Image Gene #1717: 'CACNA1D MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'CACNA1D MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.186 (Fisher's exact test), Q value = 0.49

Table S18070.  Gene #1717: 'CACNA1D MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
CACNA1D MUTATED 5 0 4 0
CACNA1D WILD-TYPE 49 10 20 22
'RCOR1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.122 (Fisher's exact test), Q value = 0.39

Table S18071.  Gene #1718: 'RCOR1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
RCOR1 MUTATED 4 0 0 0
RCOR1 WILD-TYPE 174 183 101 20
'RCOR1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.111 (Fisher's exact test), Q value = 0.37

Table S18072.  Gene #1718: 'RCOR1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
RCOR1 MUTATED 0 0 3
RCOR1 WILD-TYPE 87 80 97
'RCOR1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.796 (Fisher's exact test), Q value = 1

Table S18073.  Gene #1718: 'RCOR1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
RCOR1 MUTATED 0 2 1
RCOR1 WILD-TYPE 89 158 137
'RCOR1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.589 (Fisher's exact test), Q value = 0.89

Table S18074.  Gene #1718: 'RCOR1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
RCOR1 MUTATED 1 2 0
RCOR1 WILD-TYPE 181 131 72
'RCOR1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.918 (Fisher's exact test), Q value = 1

Table S18075.  Gene #1718: 'RCOR1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
RCOR1 MUTATED 1 1 1 1
RCOR1 WILD-TYPE 111 95 91 185
'RCOR1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0168 (Fisher's exact test), Q value = 0.13

Table S18076.  Gene #1718: 'RCOR1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
RCOR1 MUTATED 2 0 2 0 0 0 0
RCOR1 WILD-TYPE 58 50 47 40 63 125 99

Figure S4513.  Get High-res Image Gene #1718: 'RCOR1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'RCOR1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.598 (Fisher's exact test), Q value = 0.9

Table S18077.  Gene #1718: 'RCOR1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
RCOR1 MUTATED 2 1 0 1
RCOR1 WILD-TYPE 128 77 68 195
'RCOR1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.568 (Fisher's exact test), Q value = 0.88

Table S18078.  Gene #1718: 'RCOR1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
RCOR1 MUTATED 0 1 0 0 2 1 0 0 0
RCOR1 WILD-TYPE 40 61 28 80 67 47 43 28 74
'ZNF286B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.386 (Fisher's exact test), Q value = 0.71

Table S18079.  Gene #1719: 'ZNF286B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ZNF286B MUTATED 4 1 0 0
ZNF286B WILD-TYPE 174 182 101 20
'ZNF286B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.527 (Fisher's exact test), Q value = 0.85

Table S18080.  Gene #1719: 'ZNF286B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ZNF286B MUTATED 3 1 1
ZNF286B WILD-TYPE 84 79 99
'ZNF286B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.456 (Fisher's exact test), Q value = 0.78

Table S18081.  Gene #1719: 'ZNF286B MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ZNF286B MUTATED 2 1 2
ZNF286B WILD-TYPE 87 159 136
'ZNF286B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S18082.  Gene #1719: 'ZNF286B MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ZNF286B MUTATED 2 2 1
ZNF286B WILD-TYPE 180 131 71
'ZNF286B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.564 (Fisher's exact test), Q value = 0.87

Table S18083.  Gene #1719: 'ZNF286B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ZNF286B MUTATED 1 1 2 1
ZNF286B WILD-TYPE 111 95 90 185
'ZNF286B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.248 (Fisher's exact test), Q value = 0.57

Table S18084.  Gene #1719: 'ZNF286B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ZNF286B MUTATED 0 1 1 0 2 0 1
ZNF286B WILD-TYPE 60 49 48 40 61 125 98
'ZNF286B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.547 (Fisher's exact test), Q value = 0.87

Table S18085.  Gene #1719: 'ZNF286B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ZNF286B MUTATED 1 2 0 2
ZNF286B WILD-TYPE 129 76 68 194
'ZNF286B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.633 (Fisher's exact test), Q value = 0.93

Table S18086.  Gene #1719: 'ZNF286B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ZNF286B MUTATED 0 2 0 0 1 0 0 0 2
ZNF286B WILD-TYPE 40 60 28 80 68 48 43 28 72
'SPATA16 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0591 (Fisher's exact test), Q value = 0.27

Table S18087.  Gene #1720: 'SPATA16 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
SPATA16 MUTATED 3 1 0 3
SPATA16 WILD-TYPE 43 57 64 40
'SPATA16 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0159 (Fisher's exact test), Q value = 0.13

Table S18088.  Gene #1720: 'SPATA16 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
SPATA16 MUTATED 5 1 1
SPATA16 WILD-TYPE 46 82 76

Figure S4514.  Get High-res Image Gene #1720: 'SPATA16 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'SPATA16 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0455 (Fisher's exact test), Q value = 0.23

Table S18089.  Gene #1720: 'SPATA16 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
SPATA16 MUTATED 9 1 2 0
SPATA16 WILD-TYPE 169 182 99 20

Figure S4515.  Get High-res Image Gene #1720: 'SPATA16 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'SPATA16 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.527 (Fisher's exact test), Q value = 0.85

Table S18090.  Gene #1720: 'SPATA16 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
SPATA16 MUTATED 3 1 1
SPATA16 WILD-TYPE 84 79 99
'SPATA16 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.203 (Fisher's exact test), Q value = 0.51

Table S18091.  Gene #1720: 'SPATA16 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
SPATA16 MUTATED 0 5 5
SPATA16 WILD-TYPE 89 155 133
'SPATA16 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.916 (Fisher's exact test), Q value = 1

Table S18092.  Gene #1720: 'SPATA16 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
SPATA16 MUTATED 5 4 1
SPATA16 WILD-TYPE 177 129 71
'SPATA16 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.52 (Fisher's exact test), Q value = 0.84

Table S18093.  Gene #1720: 'SPATA16 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
SPATA16 MUTATED 1 2 2 7
SPATA16 WILD-TYPE 111 94 90 179
'SPATA16 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.146 (Fisher's exact test), Q value = 0.43

Table S18094.  Gene #1720: 'SPATA16 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
SPATA16 MUTATED 1 0 2 0 2 1 6
SPATA16 WILD-TYPE 59 50 47 40 61 124 93
'SPATA16 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.854 (Fisher's exact test), Q value = 1

Table S18095.  Gene #1720: 'SPATA16 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
SPATA16 MUTATED 2 2 2 4
SPATA16 WILD-TYPE 128 76 66 192
'SPATA16 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0785 (Fisher's exact test), Q value = 0.3

Table S18096.  Gene #1720: 'SPATA16 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
SPATA16 MUTATED 0 1 2 1 5 0 0 0 1
SPATA16 WILD-TYPE 40 61 26 79 64 48 43 28 73
'SPATA16 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0843 (Fisher's exact test), Q value = 0.31

Table S18097.  Gene #1720: 'SPATA16 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
SPATA16 MUTATED 0 1 0 2
SPATA16 WILD-TYPE 33 30 27 17
'SPATA16 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.448 (Fisher's exact test), Q value = 0.77

Table S18098.  Gene #1720: 'SPATA16 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
SPATA16 MUTATED 1 0 2 0
SPATA16 WILD-TYPE 53 10 22 22
'OR1L1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.37 (Fisher's exact test), Q value = 0.7

Table S18099.  Gene #1721: 'OR1L1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
OR1L1 MUTATED 4 2 1 1
OR1L1 WILD-TYPE 174 181 100 19
'OR1L1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.876 (Fisher's exact test), Q value = 1

Table S18100.  Gene #1721: 'OR1L1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
OR1L1 MUTATED 2 1 3
OR1L1 WILD-TYPE 85 79 97
'OR1L1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.509 (Fisher's exact test), Q value = 0.83

Table S18101.  Gene #1721: 'OR1L1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
OR1L1 MUTATED 0 3 3
OR1L1 WILD-TYPE 89 157 135
'OR1L1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.759 (Fisher's exact test), Q value = 1

Table S18102.  Gene #1721: 'OR1L1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
OR1L1 MUTATED 4 1 1
OR1L1 WILD-TYPE 178 132 71
'OR1L1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0199 (Fisher's exact test), Q value = 0.14

Table S18103.  Gene #1721: 'OR1L1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
OR1L1 MUTATED 0 4 3 1
OR1L1 WILD-TYPE 112 92 89 185

Figure S4516.  Get High-res Image Gene #1721: 'OR1L1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'OR1L1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.143 (Fisher's exact test), Q value = 0.42

Table S18104.  Gene #1721: 'OR1L1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
OR1L1 MUTATED 0 1 0 2 3 1 1
OR1L1 WILD-TYPE 60 49 49 38 60 124 98
'OR1L1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.511 (Fisher's exact test), Q value = 0.83

Table S18105.  Gene #1721: 'OR1L1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
OR1L1 MUTATED 2 2 2 2
OR1L1 WILD-TYPE 128 76 66 194
'OR1L1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.186 (Fisher's exact test), Q value = 0.49

Table S18106.  Gene #1721: 'OR1L1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
OR1L1 MUTATED 1 3 0 2 0 0 2 0 0
OR1L1 WILD-TYPE 39 59 28 78 69 48 41 28 74
'CCDC55 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.236 (Fisher's exact test), Q value = 0.56

Table S18107.  Gene #1722: 'CCDC55 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
CCDC55 MUTATED 7 2 3 1
CCDC55 WILD-TYPE 171 181 98 19
'CCDC55 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.196 (Fisher's exact test), Q value = 0.5

Table S18108.  Gene #1722: 'CCDC55 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
CCDC55 MUTATED 6 1 4
CCDC55 WILD-TYPE 81 79 96
'CCDC55 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.177 (Fisher's exact test), Q value = 0.48

Table S18109.  Gene #1722: 'CCDC55 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
CCDC55 MUTATED 0 3 5
CCDC55 WILD-TYPE 89 157 133
'CCDC55 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S18110.  Gene #1722: 'CCDC55 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
CCDC55 MUTATED 4 3 1
CCDC55 WILD-TYPE 178 130 71
'CCDC55 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0763 (Fisher's exact test), Q value = 0.3

Table S18111.  Gene #1722: 'CCDC55 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
CCDC55 MUTATED 2 6 3 2
CCDC55 WILD-TYPE 110 90 89 184
'CCDC55 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00466 (Fisher's exact test), Q value = 0.062

Table S18112.  Gene #1722: 'CCDC55 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
CCDC55 MUTATED 1 3 5 0 2 0 2
CCDC55 WILD-TYPE 59 47 44 40 61 125 97

Figure S4517.  Get High-res Image Gene #1722: 'CCDC55 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CCDC55 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0921 (Fisher's exact test), Q value = 0.33

Table S18113.  Gene #1722: 'CCDC55 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
CCDC55 MUTATED 7 2 0 3
CCDC55 WILD-TYPE 123 76 68 193
'CCDC55 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.378 (Fisher's exact test), Q value = 0.71

Table S18114.  Gene #1722: 'CCDC55 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
CCDC55 MUTATED 2 2 1 0 4 1 1 0 1
CCDC55 WILD-TYPE 38 60 27 80 65 47 42 28 73
'CCDC55 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.872 (Fisher's exact test), Q value = 1

Table S18115.  Gene #1722: 'CCDC55 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
CCDC55 MUTATED 1 1 0 1
CCDC55 WILD-TYPE 32 30 27 18
'CCDC55 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S18116.  Gene #1722: 'CCDC55 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
CCDC55 MUTATED 2 0 1 0
CCDC55 WILD-TYPE 52 10 23 22
'AASDH MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.312 (Fisher's exact test), Q value = 0.64

Table S18117.  Gene #1723: 'AASDH MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
AASDH MUTATED 1 1 0 2
AASDH WILD-TYPE 45 57 64 41
'AASDH MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.556 (Fisher's exact test), Q value = 0.87

Table S18118.  Gene #1723: 'AASDH MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
AASDH MUTATED 2 1 1
AASDH WILD-TYPE 49 82 76
'AASDH MUTATION STATUS' versus 'CN_CNMF'

P value = 0.619 (Fisher's exact test), Q value = 0.92

Table S18119.  Gene #1723: 'AASDH MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
AASDH MUTATED 10 6 5 0
AASDH WILD-TYPE 168 177 96 20
'AASDH MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.541 (Fisher's exact test), Q value = 0.86

Table S18120.  Gene #1723: 'AASDH MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
AASDH MUTATED 6 3 8
AASDH WILD-TYPE 81 77 92
'AASDH MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.688 (Fisher's exact test), Q value = 0.97

Table S18121.  Gene #1723: 'AASDH MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
AASDH MUTATED 5 6 8
AASDH WILD-TYPE 84 154 130
'AASDH MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.819 (Fisher's exact test), Q value = 1

Table S18122.  Gene #1723: 'AASDH MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
AASDH MUTATED 8 8 3
AASDH WILD-TYPE 174 125 69
'AASDH MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.2 (Fisher's exact test), Q value = 0.5

Table S18123.  Gene #1723: 'AASDH MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
AASDH MUTATED 5 6 6 4
AASDH WILD-TYPE 107 90 86 182
'AASDH MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.021 (Fisher's exact test), Q value = 0.15

Table S18124.  Gene #1723: 'AASDH MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
AASDH MUTATED 2 4 3 3 6 1 2
AASDH WILD-TYPE 58 46 46 37 57 124 97

Figure S4518.  Get High-res Image Gene #1723: 'AASDH MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'AASDH MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.358 (Fisher's exact test), Q value = 0.69

Table S18125.  Gene #1723: 'AASDH MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
AASDH MUTATED 7 5 3 5
AASDH WILD-TYPE 123 73 65 191
'AASDH MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.268 (Fisher's exact test), Q value = 0.59

Table S18126.  Gene #1723: 'AASDH MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
AASDH MUTATED 2 5 2 5 4 0 1 0 1
AASDH WILD-TYPE 38 57 26 75 65 48 42 28 73
'AASDH MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.166 (Fisher's exact test), Q value = 0.46

Table S18127.  Gene #1723: 'AASDH MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
AASDH MUTATED 0 3 3 2
AASDH WILD-TYPE 33 28 24 17
'AASDH MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.566 (Fisher's exact test), Q value = 0.87

Table S18128.  Gene #1723: 'AASDH MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
AASDH MUTATED 3 1 3 1
AASDH WILD-TYPE 51 9 21 21
'CTSA MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.786 (Fisher's exact test), Q value = 1

Table S18129.  Gene #1724: 'CTSA MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
CTSA MUTATED 1 0 1 1
CTSA WILD-TYPE 45 58 63 42
'CTSA MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.462 (Fisher's exact test), Q value = 0.79

Table S18130.  Gene #1724: 'CTSA MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
CTSA MUTATED 1 2 0
CTSA WILD-TYPE 50 81 77
'CTSA MUTATION STATUS' versus 'CN_CNMF'

P value = 0.094 (Fisher's exact test), Q value = 0.34

Table S18131.  Gene #1724: 'CTSA MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
CTSA MUTATED 5 0 1 0
CTSA WILD-TYPE 173 183 100 20
'CTSA MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.778 (Fisher's exact test), Q value = 1

Table S18132.  Gene #1724: 'CTSA MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
CTSA MUTATED 1 0 2
CTSA WILD-TYPE 86 80 98
'CTSA MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.139 (Fisher's exact test), Q value = 0.42

Table S18133.  Gene #1724: 'CTSA MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
CTSA MUTATED 0 1 4
CTSA WILD-TYPE 89 159 134
'CTSA MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.505 (Fisher's exact test), Q value = 0.83

Table S18134.  Gene #1724: 'CTSA MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
CTSA MUTATED 4 1 0
CTSA WILD-TYPE 178 132 72
'CTSA MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.51 (Fisher's exact test), Q value = 0.83

Table S18135.  Gene #1724: 'CTSA MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
CTSA MUTATED 0 2 1 3
CTSA WILD-TYPE 112 94 91 183
'CTSA MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.107 (Fisher's exact test), Q value = 0.36

Table S18136.  Gene #1724: 'CTSA MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
CTSA MUTATED 0 0 3 0 0 1 2
CTSA WILD-TYPE 60 50 46 40 63 124 97
'CTSA MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.886 (Fisher's exact test), Q value = 1

Table S18137.  Gene #1724: 'CTSA MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
CTSA MUTATED 2 1 0 3
CTSA WILD-TYPE 128 77 68 193
'CTSA MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.525 (Fisher's exact test), Q value = 0.85

Table S18138.  Gene #1724: 'CTSA MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
CTSA MUTATED 0 1 1 0 1 0 1 1 1
CTSA WILD-TYPE 40 61 27 80 68 48 42 27 73
'ALAS1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0632 (Fisher's exact test), Q value = 0.27

Table S18139.  Gene #1725: 'ALAS1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ALAS1 MUTATED 1 0 0 2
ALAS1 WILD-TYPE 45 58 64 41
'ALAS1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.252 (Fisher's exact test), Q value = 0.58

Table S18140.  Gene #1725: 'ALAS1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ALAS1 MUTATED 2 1 0
ALAS1 WILD-TYPE 49 82 77
'ALAS1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0134 (Fisher's exact test), Q value = 0.11

Table S18141.  Gene #1725: 'ALAS1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ALAS1 MUTATED 8 1 0 1
ALAS1 WILD-TYPE 170 182 101 19

Figure S4519.  Get High-res Image Gene #1725: 'ALAS1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ALAS1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.383 (Fisher's exact test), Q value = 0.71

Table S18142.  Gene #1725: 'ALAS1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ALAS1 MUTATED 1 1 4
ALAS1 WILD-TYPE 86 79 96
'ALAS1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.876 (Fisher's exact test), Q value = 1

Table S18143.  Gene #1725: 'ALAS1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ALAS1 MUTATED 1 2 3
ALAS1 WILD-TYPE 88 158 135
'ALAS1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.583 (Fisher's exact test), Q value = 0.89

Table S18144.  Gene #1725: 'ALAS1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ALAS1 MUTATED 3 3 0
ALAS1 WILD-TYPE 179 130 72
'ALAS1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.727 (Fisher's exact test), Q value = 0.99

Table S18145.  Gene #1725: 'ALAS1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ALAS1 MUTATED 1 3 2 4
ALAS1 WILD-TYPE 111 93 90 182
'ALAS1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0114 (Fisher's exact test), Q value = 0.1

Table S18146.  Gene #1725: 'ALAS1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ALAS1 MUTATED 2 0 3 0 0 0 5
ALAS1 WILD-TYPE 58 50 46 40 63 125 94

Figure S4520.  Get High-res Image Gene #1725: 'ALAS1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ALAS1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.653 (Fisher's exact test), Q value = 0.94

Table S18147.  Gene #1725: 'ALAS1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ALAS1 MUTATED 3 1 0 6
ALAS1 WILD-TYPE 127 77 68 190
'ALAS1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0355 (Fisher's exact test), Q value = 0.2

Table S18148.  Gene #1725: 'ALAS1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ALAS1 MUTATED 0 1 1 1 6 1 0 0 0
ALAS1 WILD-TYPE 40 61 27 79 63 47 43 28 74

Figure S4521.  Get High-res Image Gene #1725: 'ALAS1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'DDX55 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.627 (Fisher's exact test), Q value = 0.92

Table S18149.  Gene #1726: 'DDX55 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
DDX55 MUTATED 1 1 0 1
DDX55 WILD-TYPE 45 57 64 42
'DDX55 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.254 (Fisher's exact test), Q value = 0.58

Table S18150.  Gene #1726: 'DDX55 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
DDX55 MUTATED 2 1 0
DDX55 WILD-TYPE 49 82 77
'DDX55 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.07 (Fisher's exact test), Q value = 0.29

Table S18151.  Gene #1726: 'DDX55 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
DDX55 MUTATED 8 1 2 0
DDX55 WILD-TYPE 170 182 99 20
'DDX55 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0676 (Fisher's exact test), Q value = 0.28

Table S18152.  Gene #1726: 'DDX55 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
DDX55 MUTATED 2 0 6
DDX55 WILD-TYPE 85 80 94
'DDX55 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.832 (Fisher's exact test), Q value = 1

Table S18153.  Gene #1726: 'DDX55 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
DDX55 MUTATED 1 4 4
DDX55 WILD-TYPE 88 156 134
'DDX55 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.91 (Fisher's exact test), Q value = 1

Table S18154.  Gene #1726: 'DDX55 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
DDX55 MUTATED 4 3 2
DDX55 WILD-TYPE 178 130 70
'DDX55 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.333 (Fisher's exact test), Q value = 0.66

Table S18155.  Gene #1726: 'DDX55 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
DDX55 MUTATED 1 4 3 3
DDX55 WILD-TYPE 111 92 89 183
'DDX55 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.105 (Fisher's exact test), Q value = 0.36

Table S18156.  Gene #1726: 'DDX55 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
DDX55 MUTATED 1 0 4 0 2 1 3
DDX55 WILD-TYPE 59 50 45 40 61 124 96
'DDX55 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.429 (Fisher's exact test), Q value = 0.76

Table S18157.  Gene #1726: 'DDX55 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
DDX55 MUTATED 5 2 0 4
DDX55 WILD-TYPE 125 76 68 192
'DDX55 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0506 (Fisher's exact test), Q value = 0.24

Table S18158.  Gene #1726: 'DDX55 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
DDX55 MUTATED 1 2 1 0 5 2 0 0 0
DDX55 WILD-TYPE 39 60 27 80 64 46 43 28 74
'SFRP2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.629 (Fisher's exact test), Q value = 0.93

Table S18159.  Gene #1727: 'SFRP2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
SFRP2 MUTATED 1 1 0 1
SFRP2 WILD-TYPE 45 57 64 42
'SFRP2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.791 (Fisher's exact test), Q value = 1

Table S18160.  Gene #1727: 'SFRP2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
SFRP2 MUTATED 0 2 1
SFRP2 WILD-TYPE 51 81 76
'SFRP2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.337 (Fisher's exact test), Q value = 0.66

Table S18161.  Gene #1727: 'SFRP2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
SFRP2 MUTATED 5 5 0 0
SFRP2 WILD-TYPE 173 178 101 20
'SFRP2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.284 (Fisher's exact test), Q value = 0.61

Table S18162.  Gene #1727: 'SFRP2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
SFRP2 MUTATED 4 3 1
SFRP2 WILD-TYPE 83 77 99
'SFRP2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.66 (Fisher's exact test), Q value = 0.95

Table S18163.  Gene #1727: 'SFRP2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
SFRP2 MUTATED 2 2 4
SFRP2 WILD-TYPE 87 158 134
'SFRP2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.189 (Fisher's exact test), Q value = 0.49

Table S18164.  Gene #1727: 'SFRP2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
SFRP2 MUTATED 4 1 3
SFRP2 WILD-TYPE 178 132 69
'SFRP2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.535 (Fisher's exact test), Q value = 0.85

Table S18165.  Gene #1727: 'SFRP2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
SFRP2 MUTATED 3 2 3 2
SFRP2 WILD-TYPE 109 94 89 184
'SFRP2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.139 (Fisher's exact test), Q value = 0.41

Table S18166.  Gene #1727: 'SFRP2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
SFRP2 MUTATED 1 1 3 2 1 2 0
SFRP2 WILD-TYPE 59 49 46 38 62 123 99
'SFRP2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.293 (Fisher's exact test), Q value = 0.62

Table S18167.  Gene #1727: 'SFRP2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
SFRP2 MUTATED 4 3 0 3
SFRP2 WILD-TYPE 126 75 68 193
'SFRP2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.341 (Fisher's exact test), Q value = 0.67

Table S18168.  Gene #1727: 'SFRP2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
SFRP2 MUTATED 2 3 0 1 2 0 1 1 0
SFRP2 WILD-TYPE 38 59 28 79 67 48 42 27 74
'IGSF5 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0782 (Fisher's exact test), Q value = 0.3

Table S18169.  Gene #1728: 'IGSF5 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
IGSF5 MUTATED 4 2 0 2
IGSF5 WILD-TYPE 42 56 64 41
'IGSF5 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.154 (Fisher's exact test), Q value = 0.44

Table S18170.  Gene #1728: 'IGSF5 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
IGSF5 MUTATED 4 3 1
IGSF5 WILD-TYPE 47 80 76
'IGSF5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00573 (Fisher's exact test), Q value = 0.069

Table S18171.  Gene #1728: 'IGSF5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
IGSF5 MUTATED 11 2 0 1
IGSF5 WILD-TYPE 167 181 101 19

Figure S4522.  Get High-res Image Gene #1728: 'IGSF5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'IGSF5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.124 (Fisher's exact test), Q value = 0.39

Table S18172.  Gene #1728: 'IGSF5 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
IGSF5 MUTATED 2 0 5
IGSF5 WILD-TYPE 85 80 95
'IGSF5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.649 (Fisher's exact test), Q value = 0.94

Table S18173.  Gene #1728: 'IGSF5 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
IGSF5 MUTATED 2 4 6
IGSF5 WILD-TYPE 87 156 132
'IGSF5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.742 (Fisher's exact test), Q value = 1

Table S18174.  Gene #1728: 'IGSF5 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
IGSF5 MUTATED 6 5 1
IGSF5 WILD-TYPE 176 128 71
'IGSF5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.283 (Fisher's exact test), Q value = 0.61

Table S18175.  Gene #1728: 'IGSF5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
IGSF5 MUTATED 1 5 2 7
IGSF5 WILD-TYPE 111 91 90 179
'IGSF5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.811 (Fisher's exact test), Q value = 1

Table S18176.  Gene #1728: 'IGSF5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
IGSF5 MUTATED 1 1 2 2 1 3 5
IGSF5 WILD-TYPE 59 49 47 38 62 122 94
'IGSF5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.342 (Fisher's exact test), Q value = 0.67

Table S18177.  Gene #1728: 'IGSF5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
IGSF5 MUTATED 4 1 0 8
IGSF5 WILD-TYPE 126 77 68 188
'IGSF5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0702 (Fisher's exact test), Q value = 0.29

Table S18178.  Gene #1728: 'IGSF5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
IGSF5 MUTATED 1 1 0 4 6 0 1 0 0
IGSF5 WILD-TYPE 39 61 28 76 63 48 42 28 74
'MFRP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0013 (Fisher's exact test), Q value = 0.029

Table S18179.  Gene #1729: 'MFRP MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
MFRP MUTATED 11 0 1 0
MFRP WILD-TYPE 167 183 100 20

Figure S4523.  Get High-res Image Gene #1729: 'MFRP MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'MFRP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0548 (Fisher's exact test), Q value = 0.25

Table S18180.  Gene #1729: 'MFRP MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
MFRP MUTATED 6 0 4
MFRP WILD-TYPE 81 80 96
'MFRP MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.199 (Fisher's exact test), Q value = 0.5

Table S18181.  Gene #1729: 'MFRP MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
MFRP MUTATED 1 3 7
MFRP WILD-TYPE 88 157 131
'MFRP MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.848 (Fisher's exact test), Q value = 1

Table S18182.  Gene #1729: 'MFRP MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
MFRP MUTATED 6 4 1
MFRP WILD-TYPE 176 129 71
'MFRP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0559 (Fisher's exact test), Q value = 0.26

Table S18183.  Gene #1729: 'MFRP MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
MFRP MUTATED 1 5 4 2
MFRP WILD-TYPE 111 91 88 184
'MFRP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00675 (Fisher's exact test), Q value = 0.075

Table S18184.  Gene #1729: 'MFRP MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
MFRP MUTATED 0 2 5 0 3 1 1
MFRP WILD-TYPE 60 48 44 40 60 124 98

Figure S4524.  Get High-res Image Gene #1729: 'MFRP MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'MFRP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0969 (Fisher's exact test), Q value = 0.34

Table S18185.  Gene #1729: 'MFRP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
MFRP MUTATED 7 2 1 2
MFRP WILD-TYPE 123 76 67 194
'MFRP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0598 (Fisher's exact test), Q value = 0.27

Table S18186.  Gene #1729: 'MFRP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
MFRP MUTATED 3 4 0 0 2 1 1 1 0
MFRP WILD-TYPE 37 58 28 80 67 47 42 27 74
'MFRP MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.628 (Fisher's exact test), Q value = 0.92

Table S18187.  Gene #1729: 'MFRP MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
MFRP MUTATED 0 1 1 1
MFRP WILD-TYPE 33 30 26 18
'MFRP MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.697 (Fisher's exact test), Q value = 0.97

Table S18188.  Gene #1729: 'MFRP MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
MFRP MUTATED 1 0 1 1
MFRP WILD-TYPE 53 10 23 21
'PIGN MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.122 (Fisher's exact test), Q value = 0.39

Table S18189.  Gene #1730: 'PIGN MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
PIGN MUTATED 2 0 0 1
PIGN WILD-TYPE 44 58 64 42
'PIGN MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.185 (Fisher's exact test), Q value = 0.49

Table S18190.  Gene #1730: 'PIGN MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
PIGN MUTATED 2 0 1
PIGN WILD-TYPE 49 83 76
'PIGN MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0236 (Fisher's exact test), Q value = 0.16

Table S18191.  Gene #1730: 'PIGN MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
PIGN MUTATED 6 0 2 1
PIGN WILD-TYPE 172 183 99 19

Figure S4525.  Get High-res Image Gene #1730: 'PIGN MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'PIGN MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.327 (Fisher's exact test), Q value = 0.66

Table S18192.  Gene #1730: 'PIGN MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
PIGN MUTATED 4 1 1
PIGN WILD-TYPE 83 79 99
'PIGN MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S18193.  Gene #1730: 'PIGN MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
PIGN MUTATED 1 3 3
PIGN WILD-TYPE 88 157 135
'PIGN MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S18194.  Gene #1730: 'PIGN MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
PIGN MUTATED 4 2 1
PIGN WILD-TYPE 178 131 71
'PIGN MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.359 (Fisher's exact test), Q value = 0.69

Table S18195.  Gene #1730: 'PIGN MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
PIGN MUTATED 1 1 4 3
PIGN WILD-TYPE 111 95 88 183
'PIGN MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0183 (Fisher's exact test), Q value = 0.13

Table S18196.  Gene #1730: 'PIGN MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
PIGN MUTATED 2 0 4 0 1 0 2
PIGN WILD-TYPE 58 50 45 40 62 125 97

Figure S4526.  Get High-res Image Gene #1730: 'PIGN MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'PIGN MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.38 (Fisher's exact test), Q value = 0.71

Table S18197.  Gene #1730: 'PIGN MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
PIGN MUTATED 3 3 0 3
PIGN WILD-TYPE 127 75 68 193
'PIGN MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.259 (Fisher's exact test), Q value = 0.58

Table S18198.  Gene #1730: 'PIGN MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
PIGN MUTATED 0 3 1 2 3 0 0 0 0
PIGN WILD-TYPE 40 59 27 78 66 48 43 28 74
'TPK1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.477 (Fisher's exact test), Q value = 0.81

Table S18199.  Gene #1731: 'TPK1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
TPK1 MUTATED 3 2 2 1
TPK1 WILD-TYPE 175 181 99 19
'TPK1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.233 (Fisher's exact test), Q value = 0.55

Table S18200.  Gene #1731: 'TPK1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
TPK1 MUTATED 1 1 5
TPK1 WILD-TYPE 86 79 95
'TPK1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.633 (Fisher's exact test), Q value = 0.93

Table S18201.  Gene #1731: 'TPK1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
TPK1 MUTATED 0 3 2
TPK1 WILD-TYPE 89 157 136
'TPK1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.341 (Fisher's exact test), Q value = 0.67

Table S18202.  Gene #1731: 'TPK1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
TPK1 MUTATED 1 3 1
TPK1 WILD-TYPE 181 130 71
'TPK1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0997 (Fisher's exact test), Q value = 0.35

Table S18203.  Gene #1731: 'TPK1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
TPK1 MUTATED 1 4 2 1
TPK1 WILD-TYPE 111 92 90 185
'TPK1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0242 (Fisher's exact test), Q value = 0.16

Table S18204.  Gene #1731: 'TPK1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
TPK1 MUTATED 1 3 1 1 2 0 0
TPK1 WILD-TYPE 59 47 48 39 61 125 99

Figure S4527.  Get High-res Image Gene #1731: 'TPK1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'TPK1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.507 (Fisher's exact test), Q value = 0.83

Table S18205.  Gene #1731: 'TPK1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
TPK1 MUTATED 2 2 2 2
TPK1 WILD-TYPE 128 76 66 194
'TPK1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.547 (Fisher's exact test), Q value = 0.87

Table S18206.  Gene #1731: 'TPK1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
TPK1 MUTATED 1 1 1 2 1 0 2 0 0
TPK1 WILD-TYPE 39 61 27 78 68 48 41 28 74
'TPK1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.782 (Fisher's exact test), Q value = 1

Table S18207.  Gene #1731: 'TPK1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
TPK1 MUTATED 1 0 1 1
TPK1 WILD-TYPE 32 31 26 18
'TPK1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S18208.  Gene #1731: 'TPK1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
TPK1 MUTATED 2 0 1 0
TPK1 WILD-TYPE 52 10 23 22
'IGFN1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00367 (Fisher's exact test), Q value = 0.055

Table S18209.  Gene #1732: 'IGFN1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
IGFN1 MUTATED 4 0 0 0
IGFN1 WILD-TYPE 42 58 64 43

Figure S4528.  Get High-res Image Gene #1732: 'IGFN1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'IGFN1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0623 (Fisher's exact test), Q value = 0.27

Table S18210.  Gene #1732: 'IGFN1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
IGFN1 MUTATED 3 1 0
IGFN1 WILD-TYPE 48 82 77
'IGFN1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0329 (Fisher's exact test), Q value = 0.19

Table S18211.  Gene #1732: 'IGFN1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
IGFN1 MUTATED 11 2 2 1
IGFN1 WILD-TYPE 167 181 99 19

Figure S4529.  Get High-res Image Gene #1732: 'IGFN1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'IGFN1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0536 (Fisher's exact test), Q value = 0.25

Table S18212.  Gene #1732: 'IGFN1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
IGFN1 MUTATED 3 1 9
IGFN1 WILD-TYPE 84 79 91
'IGFN1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.436 (Fisher's exact test), Q value = 0.76

Table S18213.  Gene #1732: 'IGFN1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
IGFN1 MUTATED 2 6 8
IGFN1 WILD-TYPE 87 154 130
'IGFN1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.891 (Fisher's exact test), Q value = 1

Table S18214.  Gene #1732: 'IGFN1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
IGFN1 MUTATED 8 6 2
IGFN1 WILD-TYPE 174 127 70
'IGFN1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0109 (Fisher's exact test), Q value = 0.1

Table S18215.  Gene #1732: 'IGFN1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
IGFN1 MUTATED 1 9 2 5
IGFN1 WILD-TYPE 111 87 90 181

Figure S4530.  Get High-res Image Gene #1732: 'IGFN1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'IGFN1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00233 (Fisher's exact test), Q value = 0.042

Table S18216.  Gene #1732: 'IGFN1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
IGFN1 MUTATED 1 2 8 0 1 2 3
IGFN1 WILD-TYPE 59 48 41 40 62 123 96

Figure S4531.  Get High-res Image Gene #1732: 'IGFN1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'IGFN1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.143 (Fisher's exact test), Q value = 0.42

Table S18217.  Gene #1732: 'IGFN1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
IGFN1 MUTATED 8 2 0 6
IGFN1 WILD-TYPE 122 76 68 190
'IGFN1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0866 (Fisher's exact test), Q value = 0.32

Table S18218.  Gene #1732: 'IGFN1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
IGFN1 MUTATED 1 2 2 1 7 1 0 1 1
IGFN1 WILD-TYPE 39 60 26 79 62 47 43 27 73
'IGFN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00476 (Fisher's exact test), Q value = 0.062

Table S18219.  Gene #1732: 'IGFN1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
IGFN1 MUTATED 0 0 0 3
IGFN1 WILD-TYPE 33 31 27 16

Figure S4532.  Get High-res Image Gene #1732: 'IGFN1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'IGFN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.696 (Fisher's exact test), Q value = 0.97

Table S18220.  Gene #1732: 'IGFN1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
IGFN1 MUTATED 1 0 1 1
IGFN1 WILD-TYPE 53 10 23 21
'GRK5 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.407 (Fisher's exact test), Q value = 0.73

Table S18221.  Gene #1733: 'GRK5 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
GRK5 MUTATED 1 0 2 2
GRK5 WILD-TYPE 45 58 62 41
'GRK5 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.116 (Fisher's exact test), Q value = 0.38

Table S18222.  Gene #1733: 'GRK5 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
GRK5 MUTATED 2 0 3
GRK5 WILD-TYPE 49 83 74
'GRK5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0114 (Fisher's exact test), Q value = 0.1

Table S18223.  Gene #1733: 'GRK5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
GRK5 MUTATED 7 0 5 0
GRK5 WILD-TYPE 171 183 96 20

Figure S4533.  Get High-res Image Gene #1733: 'GRK5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'GRK5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.445 (Fisher's exact test), Q value = 0.77

Table S18224.  Gene #1733: 'GRK5 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
GRK5 MUTATED 4 1 2
GRK5 WILD-TYPE 83 79 98
'GRK5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.206 (Fisher's exact test), Q value = 0.51

Table S18225.  Gene #1733: 'GRK5 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
GRK5 MUTATED 0 5 5
GRK5 WILD-TYPE 89 155 133
'GRK5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.763 (Fisher's exact test), Q value = 1

Table S18226.  Gene #1733: 'GRK5 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
GRK5 MUTATED 6 3 1
GRK5 WILD-TYPE 176 130 71
'GRK5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.895 (Fisher's exact test), Q value = 1

Table S18227.  Gene #1733: 'GRK5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
GRK5 MUTATED 2 2 3 5
GRK5 WILD-TYPE 110 94 89 181
'GRK5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.396 (Fisher's exact test), Q value = 0.72

Table S18228.  Gene #1733: 'GRK5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
GRK5 MUTATED 2 1 3 0 2 1 3
GRK5 WILD-TYPE 58 49 46 40 61 124 96
'GRK5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.31 (Fisher's exact test), Q value = 0.64

Table S18229.  Gene #1733: 'GRK5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
GRK5 MUTATED 5 3 0 4
GRK5 WILD-TYPE 125 75 68 192
'GRK5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.731 (Fisher's exact test), Q value = 1

Table S18230.  Gene #1733: 'GRK5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
GRK5 MUTATED 1 3 1 3 2 0 0 1 1
GRK5 WILD-TYPE 39 59 27 77 67 48 43 27 73
'ZNF555 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0227 (Fisher's exact test), Q value = 0.15

Table S18231.  Gene #1734: 'ZNF555 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ZNF555 MUTATED 2 0 0 3
ZNF555 WILD-TYPE 44 58 64 40

Figure S4534.  Get High-res Image Gene #1734: 'ZNF555 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'ZNF555 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00686 (Fisher's exact test), Q value = 0.076

Table S18232.  Gene #1734: 'ZNF555 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ZNF555 MUTATED 4 0 1
ZNF555 WILD-TYPE 47 83 76

Figure S4535.  Get High-res Image Gene #1734: 'ZNF555 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'ZNF555 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0234 (Fisher's exact test), Q value = 0.16

Table S18233.  Gene #1734: 'ZNF555 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ZNF555 MUTATED 8 1 0 0
ZNF555 WILD-TYPE 170 182 101 20

Figure S4536.  Get High-res Image Gene #1734: 'ZNF555 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ZNF555 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.391 (Fisher's exact test), Q value = 0.72

Table S18234.  Gene #1734: 'ZNF555 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ZNF555 MUTATED 1 0 3
ZNF555 WILD-TYPE 86 80 97
'ZNF555 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.535 (Fisher's exact test), Q value = 0.85

Table S18235.  Gene #1734: 'ZNF555 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ZNF555 MUTATED 1 5 2
ZNF555 WILD-TYPE 88 155 136
'ZNF555 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S18236.  Gene #1734: 'ZNF555 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ZNF555 MUTATED 4 3 1
ZNF555 WILD-TYPE 178 130 71
'ZNF555 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0645 (Fisher's exact test), Q value = 0.28

Table S18237.  Gene #1734: 'ZNF555 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ZNF555 MUTATED 0 3 0 6
ZNF555 WILD-TYPE 112 93 92 180
'ZNF555 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0125 (Fisher's exact test), Q value = 0.11

Table S18238.  Gene #1734: 'ZNF555 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ZNF555 MUTATED 1 3 0 0 0 0 5
ZNF555 WILD-TYPE 59 47 49 40 63 125 94

Figure S4537.  Get High-res Image Gene #1734: 'ZNF555 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ZNF555 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.551 (Fisher's exact test), Q value = 0.87

Table S18239.  Gene #1734: 'ZNF555 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ZNF555 MUTATED 2 1 0 6
ZNF555 WILD-TYPE 128 77 68 190
'ZNF555 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.15 (Fisher's exact test), Q value = 0.43

Table S18240.  Gene #1734: 'ZNF555 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ZNF555 MUTATED 1 1 2 0 3 0 0 1 1
ZNF555 WILD-TYPE 39 61 26 80 66 48 43 27 73
'NRAP MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00413 (Fisher's exact test), Q value = 0.059

Table S18241.  Gene #1735: 'NRAP MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
NRAP MUTATED 3 0 0 4
NRAP WILD-TYPE 43 58 64 39

Figure S4538.  Get High-res Image Gene #1735: 'NRAP MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'NRAP MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.103 (Fisher's exact test), Q value = 0.36

Table S18242.  Gene #1735: 'NRAP MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
NRAP MUTATED 4 1 2
NRAP WILD-TYPE 47 82 75
'NRAP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00061 (Fisher's exact test), Q value = 0.018

Table S18243.  Gene #1735: 'NRAP MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
NRAP MUTATED 20 3 3 1
NRAP WILD-TYPE 158 180 98 19

Figure S4539.  Get High-res Image Gene #1735: 'NRAP MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'NRAP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00507 (Fisher's exact test), Q value = 0.064

Table S18244.  Gene #1735: 'NRAP MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
NRAP MUTATED 12 1 7
NRAP WILD-TYPE 75 79 93

Figure S4540.  Get High-res Image Gene #1735: 'NRAP MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'NRAP MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.159 (Fisher's exact test), Q value = 0.45

Table S18245.  Gene #1735: 'NRAP MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
NRAP MUTATED 2 7 11
NRAP WILD-TYPE 87 153 127
'NRAP MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.626 (Fisher's exact test), Q value = 0.92

Table S18246.  Gene #1735: 'NRAP MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
NRAP MUTATED 11 7 2
NRAP WILD-TYPE 171 126 70
'NRAP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0151 (Fisher's exact test), Q value = 0.12

Table S18247.  Gene #1735: 'NRAP MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
NRAP MUTATED 2 10 8 7
NRAP WILD-TYPE 110 86 84 179

Figure S4541.  Get High-res Image Gene #1735: 'NRAP MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'NRAP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00117 (Fisher's exact test), Q value = 0.027

Table S18248.  Gene #1735: 'NRAP MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
NRAP MUTATED 3 4 10 1 2 2 5
NRAP WILD-TYPE 57 46 39 39 61 123 94

Figure S4542.  Get High-res Image Gene #1735: 'NRAP MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'NRAP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.178 (Fisher's exact test), Q value = 0.48

Table S18249.  Gene #1735: 'NRAP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
NRAP MUTATED 9 7 1 9
NRAP WILD-TYPE 121 71 67 187
'NRAP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0561 (Fisher's exact test), Q value = 0.26

Table S18250.  Gene #1735: 'NRAP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
NRAP MUTATED 3 8 2 3 6 0 2 1 1
NRAP WILD-TYPE 37 54 26 77 63 48 41 27 73
'NRAP MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.302 (Fisher's exact test), Q value = 0.63

Table S18251.  Gene #1735: 'NRAP MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
NRAP MUTATED 2 0 1 2
NRAP WILD-TYPE 31 31 26 17
'NRAP MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.519 (Fisher's exact test), Q value = 0.84

Table S18252.  Gene #1735: 'NRAP MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
NRAP MUTATED 3 1 1 0
NRAP WILD-TYPE 51 9 23 22
'STAU1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.211 (Fisher's exact test), Q value = 0.52

Table S18253.  Gene #1736: 'STAU1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
STAU1 MUTATED 7 4 0 0
STAU1 WILD-TYPE 171 179 101 20
'STAU1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.852 (Fisher's exact test), Q value = 1

Table S18254.  Gene #1736: 'STAU1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
STAU1 MUTATED 4 2 4
STAU1 WILD-TYPE 83 78 96
'STAU1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.676 (Fisher's exact test), Q value = 0.96

Table S18255.  Gene #1736: 'STAU1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
STAU1 MUTATED 3 3 5
STAU1 WILD-TYPE 86 157 133
'STAU1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.559 (Fisher's exact test), Q value = 0.87

Table S18256.  Gene #1736: 'STAU1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
STAU1 MUTATED 7 3 1
STAU1 WILD-TYPE 175 130 71
'STAU1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0873 (Fisher's exact test), Q value = 0.32

Table S18257.  Gene #1736: 'STAU1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
STAU1 MUTATED 4 2 4 1
STAU1 WILD-TYPE 108 94 88 185
'STAU1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00461 (Fisher's exact test), Q value = 0.062

Table S18258.  Gene #1736: 'STAU1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
STAU1 MUTATED 3 2 2 3 1 0 0
STAU1 WILD-TYPE 57 48 47 37 62 125 99

Figure S4543.  Get High-res Image Gene #1736: 'STAU1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'STAU1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.183 (Fisher's exact test), Q value = 0.48

Table S18259.  Gene #1736: 'STAU1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
STAU1 MUTATED 6 2 1 2
STAU1 WILD-TYPE 124 76 67 194
'STAU1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.48 (Fisher's exact test), Q value = 0.81

Table S18260.  Gene #1736: 'STAU1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
STAU1 MUTATED 2 3 1 2 2 1 0 0 0
STAU1 WILD-TYPE 38 59 27 78 67 47 43 28 74
'STAU1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0719 (Fisher's exact test), Q value = 0.29

Table S18261.  Gene #1736: 'STAU1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
STAU1 MUTATED 1 0 1 3
STAU1 WILD-TYPE 32 31 26 16
'STAU1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S18262.  Gene #1736: 'STAU1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
STAU1 MUTATED 3 0 1 1
STAU1 WILD-TYPE 51 10 23 21
'KIAA1919 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00165 (Fisher's exact test), Q value = 0.034

Table S18263.  Gene #1737: 'KIAA1919 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
KIAA1919 MUTATED 9 0 0 0
KIAA1919 WILD-TYPE 169 183 101 20

Figure S4544.  Get High-res Image Gene #1737: 'KIAA1919 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'KIAA1919 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.181 (Fisher's exact test), Q value = 0.48

Table S18264.  Gene #1737: 'KIAA1919 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
KIAA1919 MUTATED 4 0 3
KIAA1919 WILD-TYPE 83 80 97
'KIAA1919 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.513 (Fisher's exact test), Q value = 0.83

Table S18265.  Gene #1737: 'KIAA1919 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
KIAA1919 MUTATED 1 3 5
KIAA1919 WILD-TYPE 88 157 133
'KIAA1919 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.297 (Fisher's exact test), Q value = 0.63

Table S18266.  Gene #1737: 'KIAA1919 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
KIAA1919 MUTATED 4 5 0
KIAA1919 WILD-TYPE 178 128 72
'KIAA1919 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0577 (Fisher's exact test), Q value = 0.26

Table S18267.  Gene #1737: 'KIAA1919 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
KIAA1919 MUTATED 0 3 4 2
KIAA1919 WILD-TYPE 112 93 88 184
'KIAA1919 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0112 (Fisher's exact test), Q value = 0.1

Table S18268.  Gene #1737: 'KIAA1919 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
KIAA1919 MUTATED 0 2 4 0 1 0 2
KIAA1919 WILD-TYPE 60 48 45 40 62 125 97

Figure S4545.  Get High-res Image Gene #1737: 'KIAA1919 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'KIAA1919 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.758 (Fisher's exact test), Q value = 1

Table S18269.  Gene #1737: 'KIAA1919 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
KIAA1919 MUTATED 3 2 0 4
KIAA1919 WILD-TYPE 127 76 68 192
'KIAA1919 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.248 (Fisher's exact test), Q value = 0.57

Table S18270.  Gene #1737: 'KIAA1919 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
KIAA1919 MUTATED 1 3 1 0 3 0 0 0 1
KIAA1919 WILD-TYPE 39 59 27 80 66 48 43 28 73
'CTCFL MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00167 (Fisher's exact test), Q value = 0.034

Table S18271.  Gene #1738: 'CTCFL MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
CTCFL MUTATED 5 0 0 2
CTCFL WILD-TYPE 41 58 64 41

Figure S4546.  Get High-res Image Gene #1738: 'CTCFL MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'CTCFL MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0157 (Fisher's exact test), Q value = 0.12

Table S18272.  Gene #1738: 'CTCFL MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
CTCFL MUTATED 5 1 1
CTCFL WILD-TYPE 46 82 76

Figure S4547.  Get High-res Image Gene #1738: 'CTCFL MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'CTCFL MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00012 (Fisher's exact test), Q value = 0.0059

Table S18273.  Gene #1738: 'CTCFL MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
CTCFL MUTATED 13 0 1 1
CTCFL WILD-TYPE 165 183 100 19

Figure S4548.  Get High-res Image Gene #1738: 'CTCFL MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'CTCFL MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.497 (Fisher's exact test), Q value = 0.82

Table S18274.  Gene #1738: 'CTCFL MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
CTCFL MUTATED 4 1 3
CTCFL WILD-TYPE 83 79 97
'CTCFL MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.164 (Fisher's exact test), Q value = 0.46

Table S18275.  Gene #1738: 'CTCFL MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
CTCFL MUTATED 3 2 7
CTCFL WILD-TYPE 86 158 131
'CTCFL MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.636 (Fisher's exact test), Q value = 0.93

Table S18276.  Gene #1738: 'CTCFL MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
CTCFL MUTATED 7 4 1
CTCFL WILD-TYPE 175 129 71
'CTCFL MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.745 (Fisher's exact test), Q value = 1

Table S18277.  Gene #1738: 'CTCFL MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
CTCFL MUTATED 2 3 3 8
CTCFL WILD-TYPE 110 93 89 178
'CTCFL MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0949 (Fisher's exact test), Q value = 0.34

Table S18278.  Gene #1738: 'CTCFL MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
CTCFL MUTATED 2 2 3 0 1 1 7
CTCFL WILD-TYPE 58 48 46 40 62 124 92
'CTCFL MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.93 (Fisher's exact test), Q value = 1

Table S18279.  Gene #1738: 'CTCFL MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
CTCFL MUTATED 3 3 2 7
CTCFL WILD-TYPE 127 75 66 189
'CTCFL MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.17 (Fisher's exact test), Q value = 0.47

Table S18280.  Gene #1738: 'CTCFL MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
CTCFL MUTATED 2 2 2 2 4 0 1 2 0
CTCFL WILD-TYPE 38 60 26 78 65 48 42 26 74
'CTCFL MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.592 (Fisher's exact test), Q value = 0.9

Table S18281.  Gene #1738: 'CTCFL MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
CTCFL MUTATED 2 0 1 1
CTCFL WILD-TYPE 31 31 26 18
'CTCFL MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.764 (Fisher's exact test), Q value = 1

Table S18282.  Gene #1738: 'CTCFL MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
CTCFL MUTATED 3 0 0 1
CTCFL WILD-TYPE 51 10 24 21
'LRRC31 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.178 (Fisher's exact test), Q value = 0.48

Table S18283.  Gene #1739: 'LRRC31 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
LRRC31 MUTATED 3 0 1 1
LRRC31 WILD-TYPE 43 58 63 42
'LRRC31 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.738 (Fisher's exact test), Q value = 1

Table S18284.  Gene #1739: 'LRRC31 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
LRRC31 MUTATED 2 2 1
LRRC31 WILD-TYPE 49 81 76
'LRRC31 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.424 (Fisher's exact test), Q value = 0.75

Table S18285.  Gene #1739: 'LRRC31 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
LRRC31 MUTATED 8 4 2 1
LRRC31 WILD-TYPE 170 179 99 19
'LRRC31 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.472 (Fisher's exact test), Q value = 0.8

Table S18286.  Gene #1739: 'LRRC31 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
LRRC31 MUTATED 5 3 2
LRRC31 WILD-TYPE 82 77 98
'LRRC31 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.932 (Fisher's exact test), Q value = 1

Table S18287.  Gene #1739: 'LRRC31 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
LRRC31 MUTATED 2 5 5
LRRC31 WILD-TYPE 87 155 133
'LRRC31 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S18288.  Gene #1739: 'LRRC31 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
LRRC31 MUTATED 6 4 2
LRRC31 WILD-TYPE 176 129 70
'LRRC31 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.839 (Fisher's exact test), Q value = 1

Table S18289.  Gene #1739: 'LRRC31 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
LRRC31 MUTATED 4 2 4 6
LRRC31 WILD-TYPE 108 94 88 180
'LRRC31 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.121 (Fisher's exact test), Q value = 0.39

Table S18290.  Gene #1739: 'LRRC31 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
LRRC31 MUTATED 4 0 4 2 1 2 3
LRRC31 WILD-TYPE 56 50 45 38 62 123 96
'LRRC31 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.718 (Fisher's exact test), Q value = 0.99

Table S18291.  Gene #1739: 'LRRC31 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
LRRC31 MUTATED 6 3 1 6
LRRC31 WILD-TYPE 124 75 67 190
'LRRC31 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.907 (Fisher's exact test), Q value = 1

Table S18292.  Gene #1739: 'LRRC31 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
LRRC31 MUTATED 1 3 0 3 4 2 1 1 1
LRRC31 WILD-TYPE 39 59 28 77 65 46 42 27 73
'LRRC31 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.782 (Fisher's exact test), Q value = 1

Table S18293.  Gene #1739: 'LRRC31 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
LRRC31 MUTATED 1 0 1 1
LRRC31 WILD-TYPE 32 31 26 18
'LRRC31 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.252 (Fisher's exact test), Q value = 0.58

Table S18294.  Gene #1739: 'LRRC31 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
LRRC31 MUTATED 1 0 0 2
LRRC31 WILD-TYPE 53 10 24 20
'RARG MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.697 (Fisher's exact test), Q value = 0.97

Table S18295.  Gene #1740: 'RARG MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
RARG MUTATED 2 1 1 2
RARG WILD-TYPE 44 57 63 41
'RARG MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.12 (Fisher's exact test), Q value = 0.39

Table S18296.  Gene #1740: 'RARG MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
RARG MUTATED 3 3 0
RARG WILD-TYPE 48 80 77
'RARG MUTATION STATUS' versus 'CN_CNMF'

P value = 0.153 (Fisher's exact test), Q value = 0.44

Table S18297.  Gene #1740: 'RARG MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
RARG MUTATED 7 1 2 0
RARG WILD-TYPE 171 182 99 20
'RARG MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.323 (Fisher's exact test), Q value = 0.65

Table S18298.  Gene #1740: 'RARG MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
RARG MUTATED 0 1 3
RARG WILD-TYPE 87 79 97
'RARG MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.122 (Fisher's exact test), Q value = 0.39

Table S18299.  Gene #1740: 'RARG MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
RARG MUTATED 4 2 1
RARG WILD-TYPE 85 158 137
'RARG MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.773 (Fisher's exact test), Q value = 1

Table S18300.  Gene #1740: 'RARG MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
RARG MUTATED 3 2 2
RARG WILD-TYPE 179 131 70
'RARG MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.42 (Fisher's exact test), Q value = 0.75

Table S18301.  Gene #1740: 'RARG MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
RARG MUTATED 2 3 0 5
RARG WILD-TYPE 110 93 92 181
'RARG MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.944 (Fisher's exact test), Q value = 1

Table S18302.  Gene #1740: 'RARG MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
RARG MUTATED 1 1 1 1 0 3 3
RARG WILD-TYPE 59 49 48 39 63 122 96
'RARG MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.513 (Fisher's exact test), Q value = 0.83

Table S18303.  Gene #1740: 'RARG MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
RARG MUTATED 4 0 1 5
RARG WILD-TYPE 126 78 67 191
'RARG MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.552 (Fisher's exact test), Q value = 0.87

Table S18304.  Gene #1740: 'RARG MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
RARG MUTATED 2 0 1 2 3 1 0 0 1
RARG WILD-TYPE 38 62 27 78 66 47 43 28 73
'SFRS2IP MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0136 (Fisher's exact test), Q value = 0.11

Table S18305.  Gene #1741: 'SFRS2IP MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
SFRS2IP MUTATED 5 1 0 2
SFRS2IP WILD-TYPE 41 57 64 41

Figure S4549.  Get High-res Image Gene #1741: 'SFRS2IP MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'SFRS2IP MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.527 (Fisher's exact test), Q value = 0.85

Table S18306.  Gene #1741: 'SFRS2IP MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
SFRS2IP MUTATED 3 2 3
SFRS2IP WILD-TYPE 48 81 74
'SFRS2IP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00013 (Fisher's exact test), Q value = 0.0063

Table S18307.  Gene #1741: 'SFRS2IP MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
SFRS2IP MUTATED 21 4 1 1
SFRS2IP WILD-TYPE 157 179 100 19

Figure S4550.  Get High-res Image Gene #1741: 'SFRS2IP MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'SFRS2IP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.459 (Fisher's exact test), Q value = 0.79

Table S18308.  Gene #1741: 'SFRS2IP MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
SFRS2IP MUTATED 7 3 8
SFRS2IP WILD-TYPE 80 77 92
'SFRS2IP MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.566 (Fisher's exact test), Q value = 0.87

Table S18309.  Gene #1741: 'SFRS2IP MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
SFRS2IP MUTATED 5 7 10
SFRS2IP WILD-TYPE 84 153 128
'SFRS2IP MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.707 (Fisher's exact test), Q value = 0.98

Table S18310.  Gene #1741: 'SFRS2IP MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
SFRS2IP MUTATED 12 6 4
SFRS2IP WILD-TYPE 170 127 68
'SFRS2IP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.243 (Fisher's exact test), Q value = 0.57

Table S18311.  Gene #1741: 'SFRS2IP MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
SFRS2IP MUTATED 4 9 6 8
SFRS2IP WILD-TYPE 108 87 86 178
'SFRS2IP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0019 (Fisher's exact test), Q value = 0.036

Table S18312.  Gene #1741: 'SFRS2IP MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
SFRS2IP MUTATED 1 3 10 0 4 4 5
SFRS2IP WILD-TYPE 59 47 39 40 59 121 94

Figure S4551.  Get High-res Image Gene #1741: 'SFRS2IP MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'SFRS2IP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.132 (Fisher's exact test), Q value = 0.41

Table S18313.  Gene #1741: 'SFRS2IP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
SFRS2IP MUTATED 12 3 1 10
SFRS2IP WILD-TYPE 118 75 67 186
'SFRS2IP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.788 (Fisher's exact test), Q value = 1

Table S18314.  Gene #1741: 'SFRS2IP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
SFRS2IP MUTATED 2 5 3 3 5 2 1 2 3
SFRS2IP WILD-TYPE 38 57 25 77 64 46 42 26 71
'SFRS2IP MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00329 (Fisher's exact test), Q value = 0.052

Table S18315.  Gene #1741: 'SFRS2IP MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
SFRS2IP MUTATED 1 0 0 4
SFRS2IP WILD-TYPE 32 31 27 15

Figure S4552.  Get High-res Image Gene #1741: 'SFRS2IP MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'SFRS2IP MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.578 (Fisher's exact test), Q value = 0.88

Table S18316.  Gene #1741: 'SFRS2IP MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
SFRS2IP MUTATED 3 0 2 0
SFRS2IP WILD-TYPE 51 10 22 22
'TCTEX1D2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.487 (Fisher's exact test), Q value = 0.81

Table S18317.  Gene #1742: 'TCTEX1D2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
TCTEX1D2 MUTATED 1 0 2 0
TCTEX1D2 WILD-TYPE 45 58 62 43
'TCTEX1D2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S18318.  Gene #1742: 'TCTEX1D2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
TCTEX1D2 MUTATED 1 1 1
TCTEX1D2 WILD-TYPE 50 82 76
'TCTEX1D2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.621 (Fisher's exact test), Q value = 0.92

Table S18319.  Gene #1742: 'TCTEX1D2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
TCTEX1D2 MUTATED 3 4 0 0
TCTEX1D2 WILD-TYPE 175 179 101 20
'TCTEX1D2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.688 (Fisher's exact test), Q value = 0.97

Table S18320.  Gene #1742: 'TCTEX1D2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
TCTEX1D2 MUTATED 1 2 1
TCTEX1D2 WILD-TYPE 86 78 99
'TCTEX1D2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.765 (Fisher's exact test), Q value = 1

Table S18321.  Gene #1742: 'TCTEX1D2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
TCTEX1D2 MUTATED 2 2 2
TCTEX1D2 WILD-TYPE 87 158 136
'TCTEX1D2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.577 (Fisher's exact test), Q value = 0.88

Table S18322.  Gene #1742: 'TCTEX1D2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
TCTEX1D2 MUTATED 3 3 0
TCTEX1D2 WILD-TYPE 179 130 72
'TCTEX1D2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.872 (Fisher's exact test), Q value = 1

Table S18323.  Gene #1742: 'TCTEX1D2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
TCTEX1D2 MUTATED 1 1 2 3
TCTEX1D2 WILD-TYPE 111 95 90 183
'TCTEX1D2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.775 (Fisher's exact test), Q value = 1

Table S18324.  Gene #1742: 'TCTEX1D2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
TCTEX1D2 MUTATED 1 0 1 0 2 1 2
TCTEX1D2 WILD-TYPE 59 50 48 40 61 124 97
'TCTEX1D2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.674 (Fisher's exact test), Q value = 0.96

Table S18325.  Gene #1742: 'TCTEX1D2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
TCTEX1D2 MUTATED 1 2 1 2
TCTEX1D2 WILD-TYPE 129 76 67 194
'TCTEX1D2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.949 (Fisher's exact test), Q value = 1

Table S18326.  Gene #1742: 'TCTEX1D2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
TCTEX1D2 MUTATED 0 2 0 1 1 0 1 0 1
TCTEX1D2 WILD-TYPE 40 60 28 79 68 48 42 28 73
'IKBKB MUTATION STATUS' versus 'CN_CNMF'

P value = 0.244 (Fisher's exact test), Q value = 0.57

Table S18327.  Gene #1743: 'IKBKB MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
IKBKB MUTATED 6 3 0 0
IKBKB WILD-TYPE 172 180 101 20
'IKBKB MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.776 (Fisher's exact test), Q value = 1

Table S18328.  Gene #1743: 'IKBKB MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
IKBKB MUTATED 1 2 3
IKBKB WILD-TYPE 86 78 97
'IKBKB MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.111 (Fisher's exact test), Q value = 0.37

Table S18329.  Gene #1743: 'IKBKB MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
IKBKB MUTATED 1 7 1
IKBKB WILD-TYPE 88 153 137
'IKBKB MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0161 (Fisher's exact test), Q value = 0.13

Table S18330.  Gene #1743: 'IKBKB MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
IKBKB MUTATED 1 7 1
IKBKB WILD-TYPE 181 126 71

Figure S4553.  Get High-res Image Gene #1743: 'IKBKB MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'IKBKB MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.877 (Fisher's exact test), Q value = 1

Table S18331.  Gene #1743: 'IKBKB MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
IKBKB MUTATED 3 2 1 3
IKBKB WILD-TYPE 109 94 91 183
'IKBKB MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.2 (Fisher's exact test), Q value = 0.5

Table S18332.  Gene #1743: 'IKBKB MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
IKBKB MUTATED 4 1 0 0 1 1 2
IKBKB WILD-TYPE 56 49 49 40 62 124 97
'IKBKB MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.894 (Fisher's exact test), Q value = 1

Table S18333.  Gene #1743: 'IKBKB MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
IKBKB MUTATED 3 2 1 3
IKBKB WILD-TYPE 127 76 67 193
'IKBKB MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.977 (Fisher's exact test), Q value = 1

Table S18334.  Gene #1743: 'IKBKB MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
IKBKB MUTATED 1 1 1 2 2 1 0 0 1
IKBKB WILD-TYPE 39 61 27 78 67 47 43 28 73
'PPIL5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.733 (Fisher's exact test), Q value = 1

Table S18335.  Gene #1744: 'PPIL5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
PPIL5 MUTATED 2 2 0 0
PPIL5 WILD-TYPE 176 181 101 20
'PPIL5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.397 (Fisher's exact test), Q value = 0.72

Table S18336.  Gene #1744: 'PPIL5 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
PPIL5 MUTATED 0 2 1
PPIL5 WILD-TYPE 87 78 99
'PPIL5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.454 (Fisher's exact test), Q value = 0.78

Table S18337.  Gene #1744: 'PPIL5 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
PPIL5 MUTATED 2 1 1
PPIL5 WILD-TYPE 87 159 137
'PPIL5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.826 (Fisher's exact test), Q value = 1

Table S18338.  Gene #1744: 'PPIL5 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
PPIL5 MUTATED 2 2 0
PPIL5 WILD-TYPE 180 131 72
'PPIL5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.92 (Fisher's exact test), Q value = 1

Table S18339.  Gene #1744: 'PPIL5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
PPIL5 MUTATED 1 1 1 1
PPIL5 WILD-TYPE 111 95 91 185
'PPIL5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.143 (Fisher's exact test), Q value = 0.42

Table S18340.  Gene #1744: 'PPIL5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
PPIL5 MUTATED 0 1 2 0 0 1 0
PPIL5 WILD-TYPE 60 49 47 40 63 124 99
'PPIL5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S18341.  Gene #1744: 'PPIL5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
PPIL5 MUTATED 1 1 0 2
PPIL5 WILD-TYPE 129 77 68 194
'PPIL5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0121 (Fisher's exact test), Q value = 0.11

Table S18342.  Gene #1744: 'PPIL5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
PPIL5 MUTATED 0 0 1 0 1 0 0 2 0
PPIL5 WILD-TYPE 40 62 27 80 68 48 43 26 74

Figure S4554.  Get High-res Image Gene #1744: 'PPIL5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'RNF8 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.106 (Fisher's exact test), Q value = 0.36

Table S18343.  Gene #1745: 'RNF8 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
RNF8 MUTATED 6 1 0 0
RNF8 WILD-TYPE 172 182 101 20
'RNF8 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0273 (Fisher's exact test), Q value = 0.17

Table S18344.  Gene #1745: 'RNF8 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
RNF8 MUTATED 5 0 1
RNF8 WILD-TYPE 82 80 99

Figure S4555.  Get High-res Image Gene #1745: 'RNF8 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'RNF8 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.51 (Fisher's exact test), Q value = 0.83

Table S18345.  Gene #1745: 'RNF8 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
RNF8 MUTATED 0 3 3
RNF8 WILD-TYPE 89 157 135
'RNF8 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.292 (Fisher's exact test), Q value = 0.62

Table S18346.  Gene #1745: 'RNF8 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
RNF8 MUTATED 2 4 0
RNF8 WILD-TYPE 180 129 72
'RNF8 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.192 (Fisher's exact test), Q value = 0.5

Table S18347.  Gene #1745: 'RNF8 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
RNF8 MUTATED 0 3 2 2
RNF8 WILD-TYPE 112 93 90 184
'RNF8 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.214 (Fisher's exact test), Q value = 0.52

Table S18348.  Gene #1745: 'RNF8 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
RNF8 MUTATED 0 2 1 1 1 0 2
RNF8 WILD-TYPE 60 48 48 39 62 125 97
'RNF8 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.172 (Fisher's exact test), Q value = 0.47

Table S18349.  Gene #1745: 'RNF8 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
RNF8 MUTATED 0 2 2 3
RNF8 WILD-TYPE 130 76 66 193
'RNF8 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0997 (Fisher's exact test), Q value = 0.35

Table S18350.  Gene #1745: 'RNF8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
RNF8 MUTATED 0 2 2 0 0 0 1 0 2
RNF8 WILD-TYPE 40 60 26 80 69 48 42 28 72
'EPHA6 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0323 (Fisher's exact test), Q value = 0.18

Table S18351.  Gene #1746: 'EPHA6 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
EPHA6 MUTATED 3 0 0 1
EPHA6 WILD-TYPE 43 58 64 42

Figure S4556.  Get High-res Image Gene #1746: 'EPHA6 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'EPHA6 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.232 (Fisher's exact test), Q value = 0.55

Table S18352.  Gene #1746: 'EPHA6 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
EPHA6 MUTATED 2 2 0
EPHA6 WILD-TYPE 49 81 77
'EPHA6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.142 (Fisher's exact test), Q value = 0.42

Table S18353.  Gene #1746: 'EPHA6 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
EPHA6 MUTATED 14 5 4 1
EPHA6 WILD-TYPE 164 178 97 19
'EPHA6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.633 (Fisher's exact test), Q value = 0.93

Table S18354.  Gene #1746: 'EPHA6 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
EPHA6 MUTATED 6 4 9
EPHA6 WILD-TYPE 81 76 91
'EPHA6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.467 (Fisher's exact test), Q value = 0.79

Table S18355.  Gene #1746: 'EPHA6 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
EPHA6 MUTATED 2 9 8
EPHA6 WILD-TYPE 87 151 130
'EPHA6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.269 (Fisher's exact test), Q value = 0.59

Table S18356.  Gene #1746: 'EPHA6 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
EPHA6 MUTATED 7 10 2
EPHA6 WILD-TYPE 175 123 70
'EPHA6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0372 (Fisher's exact test), Q value = 0.2

Table S18357.  Gene #1746: 'EPHA6 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
EPHA6 MUTATED 8 9 2 5
EPHA6 WILD-TYPE 104 87 90 181

Figure S4557.  Get High-res Image Gene #1746: 'EPHA6 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'EPHA6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0241 (Fisher's exact test), Q value = 0.16

Table S18358.  Gene #1746: 'EPHA6 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
EPHA6 MUTATED 5 3 5 4 2 1 4
EPHA6 WILD-TYPE 55 47 44 36 61 124 95

Figure S4558.  Get High-res Image Gene #1746: 'EPHA6 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'EPHA6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.276 (Fisher's exact test), Q value = 0.6

Table S18359.  Gene #1746: 'EPHA6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
EPHA6 MUTATED 11 3 2 8
EPHA6 WILD-TYPE 119 75 66 188
'EPHA6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.182 (Fisher's exact test), Q value = 0.48

Table S18360.  Gene #1746: 'EPHA6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
EPHA6 MUTATED 3 2 3 5 7 1 2 0 1
EPHA6 WILD-TYPE 37 60 25 75 62 47 41 28 73
'EPHA6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.333 (Fisher's exact test), Q value = 0.66

Table S18361.  Gene #1746: 'EPHA6 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
EPHA6 MUTATED 0 3 2 1
EPHA6 WILD-TYPE 33 28 25 18
'EPHA6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.601 (Fisher's exact test), Q value = 0.9

Table S18362.  Gene #1746: 'EPHA6 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
EPHA6 MUTATED 2 1 1 2
EPHA6 WILD-TYPE 52 9 23 20
'KIAA1407 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.026 (Fisher's exact test), Q value = 0.16

Table S18363.  Gene #1747: 'KIAA1407 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
KIAA1407 MUTATED 3 0 0 2
KIAA1407 WILD-TYPE 43 58 64 41

Figure S4559.  Get High-res Image Gene #1747: 'KIAA1407 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'KIAA1407 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.255 (Fisher's exact test), Q value = 0.58

Table S18364.  Gene #1747: 'KIAA1407 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
KIAA1407 MUTATED 3 1 1
KIAA1407 WILD-TYPE 48 82 76
'KIAA1407 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.288 (Fisher's exact test), Q value = 0.62

Table S18365.  Gene #1747: 'KIAA1407 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
KIAA1407 MUTATED 8 3 1 0
KIAA1407 WILD-TYPE 170 180 100 20
'KIAA1407 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S18366.  Gene #1747: 'KIAA1407 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
KIAA1407 MUTATED 3 2 3
KIAA1407 WILD-TYPE 84 78 97
'KIAA1407 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.522 (Fisher's exact test), Q value = 0.84

Table S18367.  Gene #1747: 'KIAA1407 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
KIAA1407 MUTATED 1 6 5
KIAA1407 WILD-TYPE 88 154 133
'KIAA1407 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.284 (Fisher's exact test), Q value = 0.61

Table S18368.  Gene #1747: 'KIAA1407 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
KIAA1407 MUTATED 3 6 3
KIAA1407 WILD-TYPE 179 127 69
'KIAA1407 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.886 (Fisher's exact test), Q value = 1

Table S18369.  Gene #1747: 'KIAA1407 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
KIAA1407 MUTATED 2 3 3 5
KIAA1407 WILD-TYPE 110 93 89 181
'KIAA1407 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0338 (Fisher's exact test), Q value = 0.19

Table S18370.  Gene #1747: 'KIAA1407 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
KIAA1407 MUTATED 1 0 3 2 2 0 5
KIAA1407 WILD-TYPE 59 50 46 38 61 125 94

Figure S4560.  Get High-res Image Gene #1747: 'KIAA1407 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'KIAA1407 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.879 (Fisher's exact test), Q value = 1

Table S18371.  Gene #1747: 'KIAA1407 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
KIAA1407 MUTATED 3 3 1 6
KIAA1407 WILD-TYPE 127 75 67 190
'KIAA1407 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00518 (Fisher's exact test), Q value = 0.065

Table S18372.  Gene #1747: 'KIAA1407 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
KIAA1407 MUTATED 1 3 1 0 7 0 1 0 0
KIAA1407 WILD-TYPE 39 59 27 80 62 48 42 28 74

Figure S4561.  Get High-res Image Gene #1747: 'KIAA1407 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'KIAA1407 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.391 (Fisher's exact test), Q value = 0.72

Table S18373.  Gene #1747: 'KIAA1407 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
KIAA1407 MUTATED 2 1 0 2
KIAA1407 WILD-TYPE 31 30 27 17
'KIAA1407 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S18374.  Gene #1747: 'KIAA1407 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
KIAA1407 MUTATED 3 0 1 1
KIAA1407 WILD-TYPE 51 10 23 21
'LIMCH1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0439 (Fisher's exact test), Q value = 0.22

Table S18375.  Gene #1748: 'LIMCH1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
LIMCH1 MUTATED 4 1 0 2
LIMCH1 WILD-TYPE 42 57 64 41

Figure S4562.  Get High-res Image Gene #1748: 'LIMCH1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'LIMCH1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00469 (Fisher's exact test), Q value = 0.062

Table S18376.  Gene #1748: 'LIMCH1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
LIMCH1 MUTATED 5 0 2
LIMCH1 WILD-TYPE 46 83 75

Figure S4563.  Get High-res Image Gene #1748: 'LIMCH1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'LIMCH1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00761 (Fisher's exact test), Q value = 0.081

Table S18377.  Gene #1748: 'LIMCH1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
LIMCH1 MUTATED 11 2 0 0
LIMCH1 WILD-TYPE 167 181 101 20

Figure S4564.  Get High-res Image Gene #1748: 'LIMCH1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'LIMCH1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.495 (Fisher's exact test), Q value = 0.82

Table S18378.  Gene #1748: 'LIMCH1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
LIMCH1 MUTATED 4 1 3
LIMCH1 WILD-TYPE 83 79 97
'LIMCH1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0617 (Fisher's exact test), Q value = 0.27

Table S18379.  Gene #1748: 'LIMCH1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
LIMCH1 MUTATED 2 3 10
LIMCH1 WILD-TYPE 87 157 128
'LIMCH1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.157 (Fisher's exact test), Q value = 0.45

Table S18380.  Gene #1748: 'LIMCH1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
LIMCH1 MUTATED 9 6 0
LIMCH1 WILD-TYPE 173 127 72
'LIMCH1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.561 (Fisher's exact test), Q value = 0.87

Table S18381.  Gene #1748: 'LIMCH1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
LIMCH1 MUTATED 2 5 2 6
LIMCH1 WILD-TYPE 110 91 90 180
'LIMCH1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.158 (Fisher's exact test), Q value = 0.45

Table S18382.  Gene #1748: 'LIMCH1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
LIMCH1 MUTATED 2 3 2 0 1 1 6
LIMCH1 WILD-TYPE 58 47 47 40 62 124 93
'LIMCH1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.601 (Fisher's exact test), Q value = 0.9

Table S18383.  Gene #1748: 'LIMCH1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
LIMCH1 MUTATED 2 2 1 8
LIMCH1 WILD-TYPE 128 76 67 188
'LIMCH1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.53 (Fisher's exact test), Q value = 0.85

Table S18384.  Gene #1748: 'LIMCH1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
LIMCH1 MUTATED 0 2 0 2 4 0 1 2 2
LIMCH1 WILD-TYPE 40 60 28 78 65 48 42 26 72
'ATAD2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00713 (Fisher's exact test), Q value = 0.078

Table S18385.  Gene #1749: 'ATAD2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ATAD2 MUTATED 4 0 0 2
ATAD2 WILD-TYPE 42 58 64 41

Figure S4565.  Get High-res Image Gene #1749: 'ATAD2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'ATAD2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00188 (Fisher's exact test), Q value = 0.036

Table S18386.  Gene #1749: 'ATAD2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ATAD2 MUTATED 5 0 1
ATAD2 WILD-TYPE 46 83 76

Figure S4566.  Get High-res Image Gene #1749: 'ATAD2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'ATAD2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00015 (Fisher's exact test), Q value = 0.0069

Table S18387.  Gene #1749: 'ATAD2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ATAD2 MUTATED 18 2 1 1
ATAD2 WILD-TYPE 160 181 100 19

Figure S4567.  Get High-res Image Gene #1749: 'ATAD2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ATAD2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.335 (Fisher's exact test), Q value = 0.66

Table S18388.  Gene #1749: 'ATAD2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ATAD2 MUTATED 8 3 5
ATAD2 WILD-TYPE 79 77 95
'ATAD2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.346 (Fisher's exact test), Q value = 0.67

Table S18389.  Gene #1749: 'ATAD2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ATAD2 MUTATED 3 8 11
ATAD2 WILD-TYPE 86 152 127
'ATAD2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.916 (Fisher's exact test), Q value = 1

Table S18390.  Gene #1749: 'ATAD2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ATAD2 MUTATED 11 8 3
ATAD2 WILD-TYPE 171 125 69
'ATAD2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.111 (Fisher's exact test), Q value = 0.37

Table S18391.  Gene #1749: 'ATAD2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ATAD2 MUTATED 3 9 4 6
ATAD2 WILD-TYPE 109 87 88 180
'ATAD2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00184 (Fisher's exact test), Q value = 0.036

Table S18392.  Gene #1749: 'ATAD2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ATAD2 MUTATED 1 4 6 3 2 0 6
ATAD2 WILD-TYPE 59 46 43 37 61 125 93

Figure S4568.  Get High-res Image Gene #1749: 'ATAD2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ATAD2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.216 (Fisher's exact test), Q value = 0.53

Table S18393.  Gene #1749: 'ATAD2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ATAD2 MUTATED 10 3 1 7
ATAD2 WILD-TYPE 120 75 67 189
'ATAD2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.123 (Fisher's exact test), Q value = 0.39

Table S18394.  Gene #1749: 'ATAD2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ATAD2 MUTATED 4 4 1 2 7 1 1 0 1
ATAD2 WILD-TYPE 36 58 27 78 62 47 42 28 73
'ATAD2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.519 (Fisher's exact test), Q value = 0.84

Table S18395.  Gene #1749: 'ATAD2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
ATAD2 MUTATED 2 0 2 1
ATAD2 WILD-TYPE 31 31 25 18
'ATAD2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.52 (Fisher's exact test), Q value = 0.84

Table S18396.  Gene #1749: 'ATAD2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
ATAD2 MUTATED 3 1 1 0
ATAD2 WILD-TYPE 51 9 23 22
'ZNF594 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0324 (Fisher's exact test), Q value = 0.18

Table S18397.  Gene #1750: 'ZNF594 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ZNF594 MUTATED 3 0 0 1
ZNF594 WILD-TYPE 43 58 64 42

Figure S4569.  Get High-res Image Gene #1750: 'ZNF594 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'ZNF594 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.554 (Fisher's exact test), Q value = 0.87

Table S18398.  Gene #1750: 'ZNF594 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ZNF594 MUTATED 2 1 1
ZNF594 WILD-TYPE 49 82 76
'ZNF594 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.103 (Fisher's exact test), Q value = 0.36

Table S18399.  Gene #1750: 'ZNF594 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ZNF594 MUTATED 11 3 2 0
ZNF594 WILD-TYPE 167 180 99 20
'ZNF594 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.19 (Fisher's exact test), Q value = 0.49

Table S18400.  Gene #1750: 'ZNF594 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ZNF594 MUTATED 7 2 3
ZNF594 WILD-TYPE 80 78 97
'ZNF594 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0353 (Fisher's exact test), Q value = 0.19

Table S18401.  Gene #1750: 'ZNF594 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ZNF594 MUTATED 2 2 9
ZNF594 WILD-TYPE 87 158 129

Figure S4570.  Get High-res Image Gene #1750: 'ZNF594 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'ZNF594 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.611 (Fisher's exact test), Q value = 0.91

Table S18402.  Gene #1750: 'ZNF594 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ZNF594 MUTATED 8 3 2
ZNF594 WILD-TYPE 174 130 70
'ZNF594 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.446 (Fisher's exact test), Q value = 0.77

Table S18403.  Gene #1750: 'ZNF594 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ZNF594 MUTATED 2 4 5 5
ZNF594 WILD-TYPE 110 92 87 181
'ZNF594 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.388 (Fisher's exact test), Q value = 0.72

Table S18404.  Gene #1750: 'ZNF594 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ZNF594 MUTATED 3 2 4 1 2 2 2
ZNF594 WILD-TYPE 57 48 45 39 61 123 97
'ZNF594 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.439 (Fisher's exact test), Q value = 0.77

Table S18405.  Gene #1750: 'ZNF594 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ZNF594 MUTATED 4 5 1 6
ZNF594 WILD-TYPE 126 73 67 190
'ZNF594 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.181 (Fisher's exact test), Q value = 0.48

Table S18406.  Gene #1750: 'ZNF594 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ZNF594 MUTATED 1 4 0 2 6 0 2 0 1
ZNF594 WILD-TYPE 39 58 28 78 63 48 41 28 73
'ZNF594 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.355 (Fisher's exact test), Q value = 0.68

Table S18407.  Gene #1750: 'ZNF594 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
ZNF594 MUTATED 2 1 1 3
ZNF594 WILD-TYPE 31 30 26 16
'ZNF594 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.885 (Fisher's exact test), Q value = 1

Table S18408.  Gene #1750: 'ZNF594 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
ZNF594 MUTATED 5 0 1 1
ZNF594 WILD-TYPE 49 10 23 21
'ACTRT1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0176 (Fisher's exact test), Q value = 0.13

Table S18409.  Gene #1751: 'ACTRT1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ACTRT1 MUTATED 3 0 0 0
ACTRT1 WILD-TYPE 43 58 64 43

Figure S4571.  Get High-res Image Gene #1751: 'ACTRT1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'ACTRT1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0128 (Fisher's exact test), Q value = 0.11

Table S18410.  Gene #1751: 'ACTRT1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ACTRT1 MUTATED 3 0 0
ACTRT1 WILD-TYPE 48 83 77

Figure S4572.  Get High-res Image Gene #1751: 'ACTRT1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'ACTRT1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.451 (Fisher's exact test), Q value = 0.78

Table S18411.  Gene #1751: 'ACTRT1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ACTRT1 MUTATED 6 5 1 1
ACTRT1 WILD-TYPE 172 178 100 19
'ACTRT1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.161 (Fisher's exact test), Q value = 0.45

Table S18412.  Gene #1751: 'ACTRT1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ACTRT1 MUTATED 5 4 1
ACTRT1 WILD-TYPE 82 76 99
'ACTRT1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.903 (Fisher's exact test), Q value = 1

Table S18413.  Gene #1751: 'ACTRT1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ACTRT1 MUTATED 1 4 3
ACTRT1 WILD-TYPE 88 156 135
'ACTRT1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S18414.  Gene #1751: 'ACTRT1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ACTRT1 MUTATED 4 3 1
ACTRT1 WILD-TYPE 178 130 71
'ACTRT1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.476 (Fisher's exact test), Q value = 0.8

Table S18415.  Gene #1751: 'ACTRT1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ACTRT1 MUTATED 4 2 4 3
ACTRT1 WILD-TYPE 108 94 88 183
'ACTRT1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0354 (Fisher's exact test), Q value = 0.19

Table S18416.  Gene #1751: 'ACTRT1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ACTRT1 MUTATED 3 0 1 2 4 0 3
ACTRT1 WILD-TYPE 57 50 48 38 59 125 96

Figure S4573.  Get High-res Image Gene #1751: 'ACTRT1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ACTRT1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.467 (Fisher's exact test), Q value = 0.79

Table S18417.  Gene #1751: 'ACTRT1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ACTRT1 MUTATED 5 3 2 3
ACTRT1 WILD-TYPE 125 75 66 193
'ACTRT1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.648 (Fisher's exact test), Q value = 0.93

Table S18418.  Gene #1751: 'ACTRT1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ACTRT1 MUTATED 3 2 0 1 3 1 1 1 1
ACTRT1 WILD-TYPE 37 60 28 79 66 47 42 27 73
'ACTRT1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0799 (Fisher's exact test), Q value = 0.3

Table S18419.  Gene #1751: 'ACTRT1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
ACTRT1 MUTATED 0 3 0 1
ACTRT1 WILD-TYPE 33 28 27 18
'ACTRT1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.604 (Fisher's exact test), Q value = 0.91

Table S18420.  Gene #1751: 'ACTRT1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
ACTRT1 MUTATED 2 1 1 0
ACTRT1 WILD-TYPE 52 9 23 22
'CNTNAP3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0268 (Fisher's exact test), Q value = 0.17

Table S18421.  Gene #1752: 'CNTNAP3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
CNTNAP3 MUTATED 3 0 0 2
CNTNAP3 WILD-TYPE 43 58 64 41

Figure S4574.  Get High-res Image Gene #1752: 'CNTNAP3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'CNTNAP3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.738 (Fisher's exact test), Q value = 1

Table S18422.  Gene #1752: 'CNTNAP3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
CNTNAP3 MUTATED 2 2 1
CNTNAP3 WILD-TYPE 49 81 76
'CNTNAP3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0745 (Fisher's exact test), Q value = 0.29

Table S18423.  Gene #1752: 'CNTNAP3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
CNTNAP3 MUTATED 10 2 2 0
CNTNAP3 WILD-TYPE 168 181 99 20
'CNTNAP3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.123 (Fisher's exact test), Q value = 0.39

Table S18424.  Gene #1752: 'CNTNAP3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
CNTNAP3 MUTATED 2 1 7
CNTNAP3 WILD-TYPE 85 79 93
'CNTNAP3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.821 (Fisher's exact test), Q value = 1

Table S18425.  Gene #1752: 'CNTNAP3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
CNTNAP3 MUTATED 4 5 4
CNTNAP3 WILD-TYPE 85 155 134
'CNTNAP3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.247 (Fisher's exact test), Q value = 0.57

Table S18426.  Gene #1752: 'CNTNAP3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
CNTNAP3 MUTATED 7 2 4
CNTNAP3 WILD-TYPE 175 131 68
'CNTNAP3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.301 (Fisher's exact test), Q value = 0.63

Table S18427.  Gene #1752: 'CNTNAP3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
CNTNAP3 MUTATED 1 5 3 5
CNTNAP3 WILD-TYPE 111 91 89 181
'CNTNAP3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.247 (Fisher's exact test), Q value = 0.57

Table S18428.  Gene #1752: 'CNTNAP3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
CNTNAP3 MUTATED 1 4 2 1 2 1 3
CNTNAP3 WILD-TYPE 59 46 47 39 61 124 96
'CNTNAP3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.486 (Fisher's exact test), Q value = 0.81

Table S18429.  Gene #1752: 'CNTNAP3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
CNTNAP3 MUTATED 4 3 0 7
CNTNAP3 WILD-TYPE 126 75 68 189
'CNTNAP3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.335 (Fisher's exact test), Q value = 0.66

Table S18430.  Gene #1752: 'CNTNAP3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
CNTNAP3 MUTATED 0 3 2 3 3 1 2 0 0
CNTNAP3 WILD-TYPE 40 59 26 77 66 47 41 28 74
'CNTNAP3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.626 (Fisher's exact test), Q value = 0.92

Table S18431.  Gene #1752: 'CNTNAP3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
CNTNAP3 MUTATED 0 1 1 1
CNTNAP3 WILD-TYPE 33 30 26 18
'CNTNAP3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.314 (Fisher's exact test), Q value = 0.64

Table S18432.  Gene #1752: 'CNTNAP3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
CNTNAP3 MUTATED 1 1 1 0
CNTNAP3 WILD-TYPE 53 9 23 22
'GRIN2B MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00559 (Fisher's exact test), Q value = 0.068

Table S18433.  Gene #1753: 'GRIN2B MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
GRIN2B MUTATED 2 0 0 4
GRIN2B WILD-TYPE 44 58 64 39

Figure S4575.  Get High-res Image Gene #1753: 'GRIN2B MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'GRIN2B MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0719 (Fisher's exact test), Q value = 0.29

Table S18434.  Gene #1753: 'GRIN2B MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
GRIN2B MUTATED 4 1 1
GRIN2B WILD-TYPE 47 82 76
'GRIN2B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00205 (Fisher's exact test), Q value = 0.038

Table S18435.  Gene #1753: 'GRIN2B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
GRIN2B MUTATED 20 4 3 1
GRIN2B WILD-TYPE 158 179 98 19

Figure S4576.  Get High-res Image Gene #1753: 'GRIN2B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'GRIN2B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.318 (Fisher's exact test), Q value = 0.65

Table S18436.  Gene #1753: 'GRIN2B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
GRIN2B MUTATED 6 4 11
GRIN2B WILD-TYPE 81 76 89
'GRIN2B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.275 (Fisher's exact test), Q value = 0.6

Table S18437.  Gene #1753: 'GRIN2B MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
GRIN2B MUTATED 2 9 10
GRIN2B WILD-TYPE 87 151 128
'GRIN2B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.507 (Fisher's exact test), Q value = 0.83

Table S18438.  Gene #1753: 'GRIN2B MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
GRIN2B MUTATED 10 9 2
GRIN2B WILD-TYPE 172 124 70
'GRIN2B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.19 (Fisher's exact test), Q value = 0.49

Table S18439.  Gene #1753: 'GRIN2B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
GRIN2B MUTATED 5 9 7 7
GRIN2B WILD-TYPE 107 87 85 179
'GRIN2B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00022 (Fisher's exact test), Q value = 0.0088

Table S18440.  Gene #1753: 'GRIN2B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
GRIN2B MUTATED 4 2 9 4 3 0 6
GRIN2B WILD-TYPE 56 48 40 36 60 125 93

Figure S4577.  Get High-res Image Gene #1753: 'GRIN2B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'GRIN2B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.528 (Fisher's exact test), Q value = 0.85

Table S18441.  Gene #1753: 'GRIN2B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
GRIN2B MUTATED 9 6 3 8
GRIN2B WILD-TYPE 121 72 65 188
'GRIN2B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00416 (Fisher's exact test), Q value = 0.059

Table S18442.  Gene #1753: 'GRIN2B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
GRIN2B MUTATED 4 4 2 1 9 1 4 1 0
GRIN2B WILD-TYPE 36 58 26 79 60 47 39 27 74

Figure S4578.  Get High-res Image Gene #1753: 'GRIN2B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'GRIN2B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.121 (Fisher's exact test), Q value = 0.39

Table S18443.  Gene #1753: 'GRIN2B MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
GRIN2B MUTATED 3 1 0 3
GRIN2B WILD-TYPE 30 30 27 16
'GRIN2B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.885 (Fisher's exact test), Q value = 1

Table S18444.  Gene #1753: 'GRIN2B MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
GRIN2B MUTATED 4 1 1 1
GRIN2B WILD-TYPE 50 9 23 21
'CXORF23 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.66 (Fisher's exact test), Q value = 0.95

Table S18445.  Gene #1754: 'CXORF23 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
CXORF23 MUTATED 2 2 3 0
CXORF23 WILD-TYPE 176 181 98 20
'CXORF23 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.592 (Fisher's exact test), Q value = 0.9

Table S18446.  Gene #1754: 'CXORF23 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
CXORF23 MUTATED 1 3 2
CXORF23 WILD-TYPE 86 77 98
'CXORF23 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.797 (Fisher's exact test), Q value = 1

Table S18447.  Gene #1754: 'CXORF23 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
CXORF23 MUTATED 1 4 2
CXORF23 WILD-TYPE 88 156 136
'CXORF23 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.885 (Fisher's exact test), Q value = 1

Table S18448.  Gene #1754: 'CXORF23 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
CXORF23 MUTATED 3 3 1
CXORF23 WILD-TYPE 179 130 71
'CXORF23 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.274 (Fisher's exact test), Q value = 0.6

Table S18449.  Gene #1754: 'CXORF23 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
CXORF23 MUTATED 2 1 3 1
CXORF23 WILD-TYPE 110 95 89 185
'CXORF23 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.196 (Fisher's exact test), Q value = 0.5

Table S18450.  Gene #1754: 'CXORF23 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
CXORF23 MUTATED 1 2 1 0 2 0 1
CXORF23 WILD-TYPE 59 48 48 40 61 125 98
'CXORF23 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.338 (Fisher's exact test), Q value = 0.67

Table S18451.  Gene #1754: 'CXORF23 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
CXORF23 MUTATED 3 2 1 1
CXORF23 WILD-TYPE 127 76 67 195
'CXORF23 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.854 (Fisher's exact test), Q value = 1

Table S18452.  Gene #1754: 'CXORF23 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
CXORF23 MUTATED 1 2 0 1 1 1 1 0 0
CXORF23 WILD-TYPE 39 60 28 79 68 47 42 28 74
'CXORF23 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.645 (Fisher's exact test), Q value = 0.93

Table S18453.  Gene #1754: 'CXORF23 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
CXORF23 MUTATED 1 2 0 1
CXORF23 WILD-TYPE 32 29 27 18
'CXORF23 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.769 (Fisher's exact test), Q value = 1

Table S18454.  Gene #1754: 'CXORF23 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
CXORF23 MUTATED 3 0 0 1
CXORF23 WILD-TYPE 51 10 24 21
'EFCAB4B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0997 (Fisher's exact test), Q value = 0.35

Table S18455.  Gene #1755: 'EFCAB4B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
EFCAB4B MUTATED 5 0 2 0
EFCAB4B WILD-TYPE 173 183 99 20
'EFCAB4B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.633 (Fisher's exact test), Q value = 0.93

Table S18456.  Gene #1755: 'EFCAB4B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
EFCAB4B MUTATED 1 1 3
EFCAB4B WILD-TYPE 86 79 97
'EFCAB4B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.106 (Fisher's exact test), Q value = 0.36

Table S18457.  Gene #1755: 'EFCAB4B MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
EFCAB4B MUTATED 2 0 3
EFCAB4B WILD-TYPE 87 160 135
'EFCAB4B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.718 (Fisher's exact test), Q value = 0.99

Table S18458.  Gene #1755: 'EFCAB4B MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
EFCAB4B MUTATED 3 2 0
EFCAB4B WILD-TYPE 179 131 72
'EFCAB4B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.61 (Fisher's exact test), Q value = 0.91

Table S18459.  Gene #1755: 'EFCAB4B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
EFCAB4B MUTATED 1 3 1 2
EFCAB4B WILD-TYPE 111 93 91 184
'EFCAB4B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.063 (Fisher's exact test), Q value = 0.27

Table S18460.  Gene #1755: 'EFCAB4B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
EFCAB4B MUTATED 0 0 2 2 1 0 2
EFCAB4B WILD-TYPE 60 50 47 38 62 125 97
'EFCAB4B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.862 (Fisher's exact test), Q value = 1

Table S18461.  Gene #1755: 'EFCAB4B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
EFCAB4B MUTATED 3 1 1 2
EFCAB4B WILD-TYPE 127 77 67 194
'EFCAB4B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.267 (Fisher's exact test), Q value = 0.59

Table S18462.  Gene #1755: 'EFCAB4B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
EFCAB4B MUTATED 2 1 0 0 3 0 0 0 1
EFCAB4B WILD-TYPE 38 61 28 80 66 48 43 28 73
'EPSTI1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.105 (Fisher's exact test), Q value = 0.36

Table S18463.  Gene #1756: 'EPSTI1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
EPSTI1 MUTATED 6 1 0 0
EPSTI1 WILD-TYPE 172 182 101 20
'EPSTI1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.876 (Fisher's exact test), Q value = 1

Table S18464.  Gene #1756: 'EPSTI1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
EPSTI1 MUTATED 2 1 3
EPSTI1 WILD-TYPE 85 79 97
'EPSTI1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.509 (Fisher's exact test), Q value = 0.83

Table S18465.  Gene #1756: 'EPSTI1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
EPSTI1 MUTATED 0 3 3
EPSTI1 WILD-TYPE 89 157 135
'EPSTI1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.86 (Fisher's exact test), Q value = 1

Table S18466.  Gene #1756: 'EPSTI1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
EPSTI1 MUTATED 2 3 1
EPSTI1 WILD-TYPE 180 130 71
'EPSTI1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.609 (Fisher's exact test), Q value = 0.91

Table S18467.  Gene #1756: 'EPSTI1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
EPSTI1 MUTATED 1 3 1 2
EPSTI1 WILD-TYPE 111 93 91 184
'EPSTI1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.405 (Fisher's exact test), Q value = 0.73

Table S18468.  Gene #1756: 'EPSTI1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
EPSTI1 MUTATED 1 1 1 0 1 0 3
EPSTI1 WILD-TYPE 59 49 48 40 62 125 96
'EPSTI1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.901 (Fisher's exact test), Q value = 1

Table S18469.  Gene #1756: 'EPSTI1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
EPSTI1 MUTATED 2 1 0 4
EPSTI1 WILD-TYPE 128 77 68 192
'EPSTI1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.669 (Fisher's exact test), Q value = 0.95

Table S18470.  Gene #1756: 'EPSTI1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
EPSTI1 MUTATED 0 1 1 1 3 0 0 0 1
EPSTI1 WILD-TYPE 40 61 27 79 66 48 43 28 73
'GPR160 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0659 (Fisher's exact test), Q value = 0.28

Table S18471.  Gene #1757: 'GPR160 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
GPR160 MUTATED 1 0 0 2
GPR160 WILD-TYPE 45 58 64 41
'GPR160 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.183 (Fisher's exact test), Q value = 0.48

Table S18472.  Gene #1757: 'GPR160 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
GPR160 MUTATED 2 0 1
GPR160 WILD-TYPE 49 83 76
'GPR160 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0433 (Fisher's exact test), Q value = 0.22

Table S18473.  Gene #1757: 'GPR160 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
GPR160 MUTATED 5 0 0 0
GPR160 WILD-TYPE 173 183 101 20

Figure S4579.  Get High-res Image Gene #1757: 'GPR160 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'GPR160 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.546 (Fisher's exact test), Q value = 0.86

Table S18474.  Gene #1757: 'GPR160 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
GPR160 MUTATED 1 1 3
GPR160 WILD-TYPE 88 159 135
'GPR160 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.504 (Fisher's exact test), Q value = 0.83

Table S18475.  Gene #1757: 'GPR160 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
GPR160 MUTATED 4 1 0
GPR160 WILD-TYPE 178 132 72
'GPR160 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.683 (Fisher's exact test), Q value = 0.96

Table S18476.  Gene #1757: 'GPR160 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
GPR160 MUTATED 0 1 1 3
GPR160 WILD-TYPE 112 95 91 183
'GPR160 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.146 (Fisher's exact test), Q value = 0.43

Table S18477.  Gene #1757: 'GPR160 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
GPR160 MUTATED 1 0 2 0 0 0 2
GPR160 WILD-TYPE 59 50 47 40 63 125 97
'GPR160 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.822 (Fisher's exact test), Q value = 1

Table S18478.  Gene #1757: 'GPR160 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
GPR160 MUTATED 1 0 0 3
GPR160 WILD-TYPE 129 78 68 193
'GPR160 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0163 (Fisher's exact test), Q value = 0.13

Table S18479.  Gene #1757: 'GPR160 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
GPR160 MUTATED 0 0 0 0 4 0 0 0 0
GPR160 WILD-TYPE 40 62 28 80 65 48 43 28 74

Figure S4580.  Get High-res Image Gene #1757: 'GPR160 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'EPHA2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0314 (Fisher's exact test), Q value = 0.18

Table S18480.  Gene #1758: 'EPHA2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
EPHA2 MUTATED 3 0 0 1
EPHA2 WILD-TYPE 43 58 64 42

Figure S4581.  Get High-res Image Gene #1758: 'EPHA2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'EPHA2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00311 (Fisher's exact test), Q value = 0.05

Table S18481.  Gene #1758: 'EPHA2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
EPHA2 MUTATED 4 0 0
EPHA2 WILD-TYPE 47 83 77

Figure S4582.  Get High-res Image Gene #1758: 'EPHA2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'EPHA2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.033 (Fisher's exact test), Q value = 0.19

Table S18482.  Gene #1758: 'EPHA2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
EPHA2 MUTATED 9 1 1 0
EPHA2 WILD-TYPE 169 182 100 20

Figure S4583.  Get High-res Image Gene #1758: 'EPHA2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'EPHA2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.204 (Fisher's exact test), Q value = 0.51

Table S18483.  Gene #1758: 'EPHA2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
EPHA2 MUTATED 3 0 4
EPHA2 WILD-TYPE 84 80 96
'EPHA2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.511 (Fisher's exact test), Q value = 0.83

Table S18484.  Gene #1758: 'EPHA2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
EPHA2 MUTATED 1 3 5
EPHA2 WILD-TYPE 88 157 133
'EPHA2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S18485.  Gene #1758: 'EPHA2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
EPHA2 MUTATED 5 3 1
EPHA2 WILD-TYPE 177 130 71
'EPHA2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0748 (Fisher's exact test), Q value = 0.29

Table S18486.  Gene #1758: 'EPHA2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
EPHA2 MUTATED 0 5 2 4
EPHA2 WILD-TYPE 112 91 90 182
'EPHA2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 6e-05 (Fisher's exact test), Q value = 0.0037

Table S18487.  Gene #1758: 'EPHA2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
EPHA2 MUTATED 0 0 6 0 0 0 5
EPHA2 WILD-TYPE 60 50 43 40 63 125 94

Figure S4584.  Get High-res Image Gene #1758: 'EPHA2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'EPHA2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.621 (Fisher's exact test), Q value = 0.92

Table S18488.  Gene #1758: 'EPHA2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
EPHA2 MUTATED 4 1 0 5
EPHA2 WILD-TYPE 126 77 68 191
'EPHA2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00012 (Fisher's exact test), Q value = 0.0059

Table S18489.  Gene #1758: 'EPHA2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
EPHA2 MUTATED 0 2 0 0 8 0 0 0 0
EPHA2 WILD-TYPE 40 60 28 80 61 48 43 28 74

Figure S4585.  Get High-res Image Gene #1758: 'EPHA2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'EPHA2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.136 (Fisher's exact test), Q value = 0.41

Table S18490.  Gene #1758: 'EPHA2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
EPHA2 MUTATED 1 0 0 2
EPHA2 WILD-TYPE 32 31 27 17
'EPHA2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.45 (Fisher's exact test), Q value = 0.78

Table S18491.  Gene #1758: 'EPHA2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
EPHA2 MUTATED 1 0 2 0
EPHA2 WILD-TYPE 53 10 22 22
'ZBTB7C MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00863 (Fisher's exact test), Q value = 0.087

Table S18492.  Gene #1759: 'ZBTB7C MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ZBTB7C MUTATED 3 0 0 3
ZBTB7C WILD-TYPE 43 58 64 40

Figure S4586.  Get High-res Image Gene #1759: 'ZBTB7C MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'ZBTB7C MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00204 (Fisher's exact test), Q value = 0.038

Table S18493.  Gene #1759: 'ZBTB7C MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ZBTB7C MUTATED 5 0 1
ZBTB7C WILD-TYPE 46 83 76

Figure S4587.  Get High-res Image Gene #1759: 'ZBTB7C MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'ZBTB7C MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00249 (Fisher's exact test), Q value = 0.043

Table S18494.  Gene #1759: 'ZBTB7C MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ZBTB7C MUTATED 11 0 4 0
ZBTB7C WILD-TYPE 167 183 97 20

Figure S4588.  Get High-res Image Gene #1759: 'ZBTB7C MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ZBTB7C MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.583 (Fisher's exact test), Q value = 0.89

Table S18495.  Gene #1759: 'ZBTB7C MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ZBTB7C MUTATED 2 2 5
ZBTB7C WILD-TYPE 85 78 95
'ZBTB7C MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.192 (Fisher's exact test), Q value = 0.49

Table S18496.  Gene #1759: 'ZBTB7C MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ZBTB7C MUTATED 5 5 2
ZBTB7C WILD-TYPE 84 155 136
'ZBTB7C MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0239 (Fisher's exact test), Q value = 0.16

Table S18497.  Gene #1759: 'ZBTB7C MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ZBTB7C MUTATED 3 3 6
ZBTB7C WILD-TYPE 179 130 66

Figure S4589.  Get High-res Image Gene #1759: 'ZBTB7C MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'ZBTB7C MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.663 (Fisher's exact test), Q value = 0.95

Table S18498.  Gene #1759: 'ZBTB7C MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ZBTB7C MUTATED 3 5 2 5
ZBTB7C WILD-TYPE 109 91 90 181
'ZBTB7C MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00055 (Fisher's exact test), Q value = 0.016

Table S18499.  Gene #1759: 'ZBTB7C MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ZBTB7C MUTATED 3 0 6 0 1 0 5
ZBTB7C WILD-TYPE 57 50 43 40 62 125 94

Figure S4590.  Get High-res Image Gene #1759: 'ZBTB7C MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ZBTB7C MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.16 (Fisher's exact test), Q value = 0.45

Table S18500.  Gene #1759: 'ZBTB7C MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ZBTB7C MUTATED 7 1 0 7
ZBTB7C WILD-TYPE 123 77 68 189
'ZBTB7C MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00134 (Fisher's exact test), Q value = 0.03

Table S18501.  Gene #1759: 'ZBTB7C MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ZBTB7C MUTATED 0 2 0 1 9 2 0 1 0
ZBTB7C WILD-TYPE 40 60 28 79 60 46 43 27 74

Figure S4591.  Get High-res Image Gene #1759: 'ZBTB7C MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'ZBTB7C MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.084 (Fisher's exact test), Q value = 0.31

Table S18502.  Gene #1759: 'ZBTB7C MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
ZBTB7C MUTATED 0 1 0 2
ZBTB7C WILD-TYPE 33 30 27 17
'ZBTB7C MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0624 (Fisher's exact test), Q value = 0.27

Table S18503.  Gene #1759: 'ZBTB7C MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
ZBTB7C MUTATED 0 1 2 0
ZBTB7C WILD-TYPE 54 9 22 22
'CHM MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0513 (Fisher's exact test), Q value = 0.24

Table S18504.  Gene #1760: 'CHM MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
CHM MUTATED 2 0 2 1
CHM WILD-TYPE 176 183 99 19
'CHM MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.203 (Fisher's exact test), Q value = 0.51

Table S18505.  Gene #1760: 'CHM MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
CHM MUTATED 3 0 1
CHM WILD-TYPE 84 80 99
'CHM MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.359 (Fisher's exact test), Q value = 0.69

Table S18506.  Gene #1760: 'CHM MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
CHM MUTATED 0 1 3
CHM WILD-TYPE 89 159 135
'CHM MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.673 (Fisher's exact test), Q value = 0.96

Table S18507.  Gene #1760: 'CHM MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
CHM MUTATED 3 1 0
CHM WILD-TYPE 179 132 72
'CHM MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.373 (Fisher's exact test), Q value = 0.7

Table S18508.  Gene #1760: 'CHM MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
CHM MUTATED 2 2 0 1
CHM WILD-TYPE 110 94 92 185
'CHM MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0128 (Fisher's exact test), Q value = 0.11

Table S18509.  Gene #1760: 'CHM MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
CHM MUTATED 3 1 0 1 0 0 0
CHM WILD-TYPE 57 49 49 39 63 125 99

Figure S4592.  Get High-res Image Gene #1760: 'CHM MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CHM MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.324 (Fisher's exact test), Q value = 0.65

Table S18510.  Gene #1760: 'CHM MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
CHM MUTATED 3 0 1 1
CHM WILD-TYPE 127 78 67 195
'CHM MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.368 (Fisher's exact test), Q value = 0.7

Table S18511.  Gene #1760: 'CHM MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
CHM MUTATED 1 0 0 1 1 0 2 0 0
CHM WILD-TYPE 39 62 28 79 68 48 41 28 74
'CHM MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.705 (Fisher's exact test), Q value = 0.98

Table S18512.  Gene #1760: 'CHM MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
CHM MUTATED 2 1 0 0
CHM WILD-TYPE 31 30 27 19
'CHM MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.561 (Fisher's exact test), Q value = 0.87

Table S18513.  Gene #1760: 'CHM MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
CHM MUTATED 3 0 0 0
CHM WILD-TYPE 51 10 24 22
'MAPK14 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0649 (Fisher's exact test), Q value = 0.28

Table S18514.  Gene #1761: 'MAPK14 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
MAPK14 MUTATED 1 0 0 2
MAPK14 WILD-TYPE 45 58 64 41
'MAPK14 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.461 (Fisher's exact test), Q value = 0.79

Table S18515.  Gene #1761: 'MAPK14 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
MAPK14 MUTATED 1 2 0
MAPK14 WILD-TYPE 50 81 77
'MAPK14 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0113 (Fisher's exact test), Q value = 0.1

Table S18516.  Gene #1761: 'MAPK14 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
MAPK14 MUTATED 5 1 0 2
MAPK14 WILD-TYPE 173 182 101 18

Figure S4593.  Get High-res Image Gene #1761: 'MAPK14 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'MAPK14 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.526 (Fisher's exact test), Q value = 0.85

Table S18517.  Gene #1761: 'MAPK14 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
MAPK14 MUTATED 3 1 1
MAPK14 WILD-TYPE 84 79 99
'MAPK14 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S18518.  Gene #1761: 'MAPK14 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
MAPK14 MUTATED 1 3 2
MAPK14 WILD-TYPE 88 157 136
'MAPK14 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.411 (Fisher's exact test), Q value = 0.74

Table S18519.  Gene #1761: 'MAPK14 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
MAPK14 MUTATED 3 1 2
MAPK14 WILD-TYPE 179 132 70
'MAPK14 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.86 (Fisher's exact test), Q value = 1

Table S18520.  Gene #1761: 'MAPK14 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
MAPK14 MUTATED 1 2 2 3
MAPK14 WILD-TYPE 111 94 90 183
'MAPK14 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.789 (Fisher's exact test), Q value = 1

Table S18521.  Gene #1761: 'MAPK14 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
MAPK14 MUTATED 1 1 0 1 2 1 2
MAPK14 WILD-TYPE 59 49 49 39 61 124 97
'MAPK14 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.309 (Fisher's exact test), Q value = 0.64

Table S18522.  Gene #1761: 'MAPK14 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
MAPK14 MUTATED 1 3 1 2
MAPK14 WILD-TYPE 129 75 67 194
'MAPK14 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.486 (Fisher's exact test), Q value = 0.81

Table S18523.  Gene #1761: 'MAPK14 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
MAPK14 MUTATED 1 2 1 1 0 1 1 0 0
MAPK14 WILD-TYPE 39 60 27 79 69 47 42 28 74
'C12ORF11 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0331 (Fisher's exact test), Q value = 0.19

Table S18524.  Gene #1762: 'C12ORF11 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
C12ORF11 MUTATED 2 1 0 4
C12ORF11 WILD-TYPE 44 57 64 39

Figure S4594.  Get High-res Image Gene #1762: 'C12ORF11 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'C12ORF11 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.792 (Fisher's exact test), Q value = 1

Table S18525.  Gene #1762: 'C12ORF11 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
C12ORF11 MUTATED 2 2 3
C12ORF11 WILD-TYPE 49 81 74
'C12ORF11 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00886 (Fisher's exact test), Q value = 0.088

Table S18526.  Gene #1762: 'C12ORF11 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
C12ORF11 MUTATED 11 1 1 0
C12ORF11 WILD-TYPE 167 182 100 20

Figure S4595.  Get High-res Image Gene #1762: 'C12ORF11 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'C12ORF11 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.444 (Fisher's exact test), Q value = 0.77

Table S18527.  Gene #1762: 'C12ORF11 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
C12ORF11 MUTATED 4 1 2
C12ORF11 WILD-TYPE 83 79 98
'C12ORF11 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.041 (Fisher's exact test), Q value = 0.21

Table S18528.  Gene #1762: 'C12ORF11 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
C12ORF11 MUTATED 0 4 8
C12ORF11 WILD-TYPE 89 156 130

Figure S4596.  Get High-res Image Gene #1762: 'C12ORF11 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'C12ORF11 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.104 (Fisher's exact test), Q value = 0.36

Table S18529.  Gene #1762: 'C12ORF11 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
C12ORF11 MUTATED 9 3 0
C12ORF11 WILD-TYPE 173 130 72
'C12ORF11 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0956 (Fisher's exact test), Q value = 0.34

Table S18530.  Gene #1762: 'C12ORF11 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
C12ORF11 MUTATED 0 4 4 6
C12ORF11 WILD-TYPE 112 92 88 180
'C12ORF11 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.045 (Fisher's exact test), Q value = 0.23

Table S18531.  Gene #1762: 'C12ORF11 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
C12ORF11 MUTATED 2 0 5 1 0 2 4
C12ORF11 WILD-TYPE 58 50 44 39 63 123 95

Figure S4597.  Get High-res Image Gene #1762: 'C12ORF11 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'C12ORF11 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.482 (Fisher's exact test), Q value = 0.81

Table S18532.  Gene #1762: 'C12ORF11 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
C12ORF11 MUTATED 5 2 0 6
C12ORF11 WILD-TYPE 125 76 68 190
'C12ORF11 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.158 (Fisher's exact test), Q value = 0.45

Table S18533.  Gene #1762: 'C12ORF11 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
C12ORF11 MUTATED 0 4 2 2 3 1 0 1 0
C12ORF11 WILD-TYPE 40 58 26 78 66 47 43 27 74
'C12ORF11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0603 (Fisher's exact test), Q value = 0.27

Table S18534.  Gene #1762: 'C12ORF11 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
C12ORF11 MUTATED 0 0 1 2
C12ORF11 WILD-TYPE 33 31 26 17
'C12ORF11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S18535.  Gene #1762: 'C12ORF11 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
C12ORF11 MUTATED 2 0 1 0
C12ORF11 WILD-TYPE 52 10 23 22
'AOX1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00736 (Fisher's exact test), Q value = 0.079

Table S18536.  Gene #1763: 'AOX1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
AOX1 MUTATED 4 0 0 2
AOX1 WILD-TYPE 42 58 64 41

Figure S4598.  Get High-res Image Gene #1763: 'AOX1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'AOX1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00168 (Fisher's exact test), Q value = 0.034

Table S18537.  Gene #1763: 'AOX1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
AOX1 MUTATED 5 0 1
AOX1 WILD-TYPE 46 83 76

Figure S4599.  Get High-res Image Gene #1763: 'AOX1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'AOX1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0455 (Fisher's exact test), Q value = 0.23

Table S18538.  Gene #1763: 'AOX1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
AOX1 MUTATED 10 2 1 0
AOX1 WILD-TYPE 168 181 100 20

Figure S4600.  Get High-res Image Gene #1763: 'AOX1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'AOX1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.634 (Fisher's exact test), Q value = 0.93

Table S18539.  Gene #1763: 'AOX1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
AOX1 MUTATED 2 1 4
AOX1 WILD-TYPE 85 79 96
'AOX1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.603 (Fisher's exact test), Q value = 0.91

Table S18540.  Gene #1763: 'AOX1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
AOX1 MUTATED 1 4 5
AOX1 WILD-TYPE 88 156 133
'AOX1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.839 (Fisher's exact test), Q value = 1

Table S18541.  Gene #1763: 'AOX1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
AOX1 MUTATED 4 4 2
AOX1 WILD-TYPE 178 129 70
'AOX1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.87 (Fisher's exact test), Q value = 1

Table S18542.  Gene #1763: 'AOX1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
AOX1 MUTATED 2 2 3 6
AOX1 WILD-TYPE 110 94 89 180
'AOX1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0233 (Fisher's exact test), Q value = 0.16

Table S18543.  Gene #1763: 'AOX1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
AOX1 MUTATED 1 1 4 0 2 0 5
AOX1 WILD-TYPE 59 49 45 40 61 125 94

Figure S4601.  Get High-res Image Gene #1763: 'AOX1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'AOX1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.269 (Fisher's exact test), Q value = 0.59

Table S18544.  Gene #1763: 'AOX1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
AOX1 MUTATED 6 1 0 6
AOX1 WILD-TYPE 124 77 68 190
'AOX1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0261 (Fisher's exact test), Q value = 0.16

Table S18545.  Gene #1763: 'AOX1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
AOX1 MUTATED 2 3 0 1 6 0 0 1 0
AOX1 WILD-TYPE 38 59 28 79 63 48 43 27 74

Figure S4602.  Get High-res Image Gene #1763: 'AOX1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'AOX1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0598 (Fisher's exact test), Q value = 0.27

Table S18546.  Gene #1763: 'AOX1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
AOX1 MUTATED 0 0 1 2
AOX1 WILD-TYPE 33 31 26 17
'AOX1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.45 (Fisher's exact test), Q value = 0.78

Table S18547.  Gene #1763: 'AOX1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
AOX1 MUTATED 1 0 2 0
AOX1 WILD-TYPE 53 10 22 22
'SLC12A2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.104 (Fisher's exact test), Q value = 0.36

Table S18548.  Gene #1764: 'SLC12A2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
SLC12A2 MUTATED 3 1 0 2
SLC12A2 WILD-TYPE 43 57 64 41
'SLC12A2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.339 (Fisher's exact test), Q value = 0.67

Table S18549.  Gene #1764: 'SLC12A2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
SLC12A2 MUTATED 3 2 1
SLC12A2 WILD-TYPE 48 81 76
'SLC12A2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0247 (Fisher's exact test), Q value = 0.16

Table S18550.  Gene #1764: 'SLC12A2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
SLC12A2 MUTATED 12 2 3 1
SLC12A2 WILD-TYPE 166 181 98 19

Figure S4603.  Get High-res Image Gene #1764: 'SLC12A2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'SLC12A2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.192 (Fisher's exact test), Q value = 0.49

Table S18551.  Gene #1764: 'SLC12A2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
SLC12A2 MUTATED 7 2 3
SLC12A2 WILD-TYPE 80 78 97
'SLC12A2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.046 (Fisher's exact test), Q value = 0.23

Table S18552.  Gene #1764: 'SLC12A2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
SLC12A2 MUTATED 0 5 8
SLC12A2 WILD-TYPE 89 155 130

Figure S4604.  Get High-res Image Gene #1764: 'SLC12A2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'SLC12A2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.706 (Fisher's exact test), Q value = 0.98

Table S18553.  Gene #1764: 'SLC12A2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
SLC12A2 MUTATED 7 5 1
SLC12A2 WILD-TYPE 175 128 71
'SLC12A2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0301 (Fisher's exact test), Q value = 0.18

Table S18554.  Gene #1764: 'SLC12A2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
SLC12A2 MUTATED 1 2 8 7
SLC12A2 WILD-TYPE 111 94 84 179

Figure S4605.  Get High-res Image Gene #1764: 'SLC12A2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'SLC12A2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.242 (Fisher's exact test), Q value = 0.57

Table S18555.  Gene #1764: 'SLC12A2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
SLC12A2 MUTATED 3 1 3 1 4 1 5
SLC12A2 WILD-TYPE 57 49 46 39 59 124 94
'SLC12A2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.216 (Fisher's exact test), Q value = 0.53

Table S18556.  Gene #1764: 'SLC12A2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
SLC12A2 MUTATED 3 6 1 7
SLC12A2 WILD-TYPE 127 72 67 189
'SLC12A2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.339 (Fisher's exact test), Q value = 0.67

Table S18557.  Gene #1764: 'SLC12A2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
SLC12A2 MUTATED 1 6 1 1 4 1 1 0 2
SLC12A2 WILD-TYPE 39 56 27 79 65 47 42 28 72
'SLC12A2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.357 (Fisher's exact test), Q value = 0.69

Table S18558.  Gene #1764: 'SLC12A2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
SLC12A2 MUTATED 1 1 0 2
SLC12A2 WILD-TYPE 32 30 27 17
'SLC12A2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.869 (Fisher's exact test), Q value = 1

Table S18559.  Gene #1764: 'SLC12A2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
SLC12A2 MUTATED 3 0 1 0
SLC12A2 WILD-TYPE 51 10 23 22
'UGT2A1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.12 (Fisher's exact test), Q value = 0.39

Table S18560.  Gene #1765: 'UGT2A1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
UGT2A1 MUTATED 1 1 0 3
UGT2A1 WILD-TYPE 45 57 64 40
'UGT2A1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0894 (Fisher's exact test), Q value = 0.33

Table S18561.  Gene #1765: 'UGT2A1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
UGT2A1 MUTATED 3 2 0
UGT2A1 WILD-TYPE 48 81 77
'UGT2A1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00088 (Fisher's exact test), Q value = 0.022

Table S18562.  Gene #1765: 'UGT2A1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
UGT2A1 MUTATED 10 0 0 0
UGT2A1 WILD-TYPE 168 183 101 20

Figure S4606.  Get High-res Image Gene #1765: 'UGT2A1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'UGT2A1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.78 (Fisher's exact test), Q value = 1

Table S18563.  Gene #1765: 'UGT2A1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
UGT2A1 MUTATED 1 0 2
UGT2A1 WILD-TYPE 86 80 98
'UGT2A1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.388 (Fisher's exact test), Q value = 0.72

Table S18564.  Gene #1765: 'UGT2A1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
UGT2A1 MUTATED 3 3 1
UGT2A1 WILD-TYPE 86 157 137
'UGT2A1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.886 (Fisher's exact test), Q value = 1

Table S18565.  Gene #1765: 'UGT2A1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
UGT2A1 MUTATED 3 3 1
UGT2A1 WILD-TYPE 179 130 71
'UGT2A1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.116 (Fisher's exact test), Q value = 0.38

Table S18566.  Gene #1765: 'UGT2A1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
UGT2A1 MUTATED 0 1 2 7
UGT2A1 WILD-TYPE 112 95 90 179
'UGT2A1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.145 (Fisher's exact test), Q value = 0.42

Table S18567.  Gene #1765: 'UGT2A1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
UGT2A1 MUTATED 0 1 1 0 1 1 6
UGT2A1 WILD-TYPE 60 49 48 40 62 124 93
'UGT2A1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.369 (Fisher's exact test), Q value = 0.7

Table S18568.  Gene #1765: 'UGT2A1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
UGT2A1 MUTATED 2 1 0 7
UGT2A1 WILD-TYPE 128 77 68 189
'UGT2A1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0063 (Fisher's exact test), Q value = 0.073

Table S18569.  Gene #1765: 'UGT2A1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
UGT2A1 MUTATED 0 1 2 0 6 0 0 0 1
UGT2A1 WILD-TYPE 40 61 26 80 63 48 43 28 73

Figure S4607.  Get High-res Image Gene #1765: 'UGT2A1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'CXCR7 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.256 (Fisher's exact test), Q value = 0.58

Table S18570.  Gene #1766: 'CXCR7 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
CXCR7 MUTATED 2 0 1 2
CXCR7 WILD-TYPE 44 58 63 41
'CXCR7 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.369 (Fisher's exact test), Q value = 0.7

Table S18571.  Gene #1766: 'CXCR7 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
CXCR7 MUTATED 0 2 3
CXCR7 WILD-TYPE 51 81 74
'CXCR7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.148 (Fisher's exact test), Q value = 0.43

Table S18572.  Gene #1766: 'CXCR7 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
CXCR7 MUTATED 11 6 2 2
CXCR7 WILD-TYPE 167 177 99 18
'CXCR7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.7 (Fisher's exact test), Q value = 0.97

Table S18573.  Gene #1766: 'CXCR7 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
CXCR7 MUTATED 6 3 5
CXCR7 WILD-TYPE 81 77 95
'CXCR7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.492 (Fisher's exact test), Q value = 0.82

Table S18574.  Gene #1766: 'CXCR7 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
CXCR7 MUTATED 4 4 7
CXCR7 WILD-TYPE 85 156 131
'CXCR7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.941 (Fisher's exact test), Q value = 1

Table S18575.  Gene #1766: 'CXCR7 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
CXCR7 MUTATED 8 5 2
CXCR7 WILD-TYPE 174 128 70
'CXCR7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.327 (Fisher's exact test), Q value = 0.66

Table S18576.  Gene #1766: 'CXCR7 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
CXCR7 MUTATED 5 7 3 5
CXCR7 WILD-TYPE 107 89 89 181
'CXCR7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0353 (Fisher's exact test), Q value = 0.19

Table S18577.  Gene #1766: 'CXCR7 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
CXCR7 MUTATED 3 1 7 1 3 2 3
CXCR7 WILD-TYPE 57 49 42 39 60 123 96

Figure S4608.  Get High-res Image Gene #1766: 'CXCR7 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CXCR7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.412 (Fisher's exact test), Q value = 0.74

Table S18578.  Gene #1766: 'CXCR7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
CXCR7 MUTATED 8 2 1 10
CXCR7 WILD-TYPE 122 76 67 186
'CXCR7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.173 (Fisher's exact test), Q value = 0.47

Table S18579.  Gene #1766: 'CXCR7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
CXCR7 MUTATED 4 3 1 3 6 1 2 1 0
CXCR7 WILD-TYPE 36 59 27 77 63 47 41 27 74
'CXCR7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.699 (Fisher's exact test), Q value = 0.97

Table S18580.  Gene #1766: 'CXCR7 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
CXCR7 MUTATED 2 1 0 1
CXCR7 WILD-TYPE 31 30 27 18
'CXCR7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.604 (Fisher's exact test), Q value = 0.91

Table S18581.  Gene #1766: 'CXCR7 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
CXCR7 MUTATED 2 1 1 0
CXCR7 WILD-TYPE 52 9 23 22
'SSRP1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.122 (Fisher's exact test), Q value = 0.39

Table S18582.  Gene #1767: 'SSRP1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
SSRP1 MUTATED 2 0 0 1
SSRP1 WILD-TYPE 44 58 64 42
'SSRP1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.186 (Fisher's exact test), Q value = 0.49

Table S18583.  Gene #1767: 'SSRP1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
SSRP1 MUTATED 2 0 1
SSRP1 WILD-TYPE 49 83 76
'SSRP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0167 (Fisher's exact test), Q value = 0.13

Table S18584.  Gene #1767: 'SSRP1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
SSRP1 MUTATED 11 1 3 0
SSRP1 WILD-TYPE 167 182 98 20

Figure S4609.  Get High-res Image Gene #1767: 'SSRP1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'SSRP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.813 (Fisher's exact test), Q value = 1

Table S18585.  Gene #1767: 'SSRP1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
SSRP1 MUTATED 5 3 4
SSRP1 WILD-TYPE 82 77 96
'SSRP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.115 (Fisher's exact test), Q value = 0.38

Table S18586.  Gene #1767: 'SSRP1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
SSRP1 MUTATED 1 3 8
SSRP1 WILD-TYPE 88 157 130
'SSRP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.104 (Fisher's exact test), Q value = 0.36

Table S18587.  Gene #1767: 'SSRP1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
SSRP1 MUTATED 9 3 0
SSRP1 WILD-TYPE 173 130 72
'SSRP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.288 (Fisher's exact test), Q value = 0.62

Table S18588.  Gene #1767: 'SSRP1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
SSRP1 MUTATED 3 4 5 3
SSRP1 WILD-TYPE 109 92 87 183
'SSRP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00018 (Fisher's exact test), Q value = 0.0078

Table S18589.  Gene #1767: 'SSRP1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
SSRP1 MUTATED 3 4 6 0 0 0 2
SSRP1 WILD-TYPE 57 46 43 40 63 125 97

Figure S4610.  Get High-res Image Gene #1767: 'SSRP1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'SSRP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0723 (Fisher's exact test), Q value = 0.29

Table S18590.  Gene #1767: 'SSRP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
SSRP1 MUTATED 8 3 0 4
SSRP1 WILD-TYPE 122 75 68 192
'SSRP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.182 (Fisher's exact test), Q value = 0.48

Table S18591.  Gene #1767: 'SSRP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
SSRP1 MUTATED 0 3 2 3 5 1 1 0 0
SSRP1 WILD-TYPE 40 59 26 77 64 47 42 28 74
'SSRP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0972 (Fisher's exact test), Q value = 0.34

Table S18592.  Gene #1767: 'SSRP1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
SSRP1 MUTATED 2 0 0 2
SSRP1 WILD-TYPE 31 31 27 17
'SSRP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.87 (Fisher's exact test), Q value = 1

Table S18593.  Gene #1767: 'SSRP1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
SSRP1 MUTATED 3 0 1 0
SSRP1 WILD-TYPE 51 10 23 22
'IGFBP3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.122 (Fisher's exact test), Q value = 0.39

Table S18594.  Gene #1768: 'IGFBP3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
IGFBP3 MUTATED 1 3 0 0
IGFBP3 WILD-TYPE 45 55 64 43
'IGFBP3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.292 (Fisher's exact test), Q value = 0.62

Table S18595.  Gene #1768: 'IGFBP3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
IGFBP3 MUTATED 1 3 0
IGFBP3 WILD-TYPE 50 80 77
'IGFBP3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.759 (Fisher's exact test), Q value = 1

Table S18596.  Gene #1768: 'IGFBP3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
IGFBP3 MUTATED 4 2 2 0
IGFBP3 WILD-TYPE 174 181 99 20
'IGFBP3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S18597.  Gene #1768: 'IGFBP3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
IGFBP3 MUTATED 2 1 2
IGFBP3 WILD-TYPE 85 79 98
'IGFBP3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.228 (Fisher's exact test), Q value = 0.55

Table S18598.  Gene #1768: 'IGFBP3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
IGFBP3 MUTATED 3 1 3
IGFBP3 WILD-TYPE 86 159 135
'IGFBP3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.486 (Fisher's exact test), Q value = 0.81

Table S18599.  Gene #1768: 'IGFBP3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
IGFBP3 MUTATED 4 1 2
IGFBP3 WILD-TYPE 178 132 70
'IGFBP3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.717 (Fisher's exact test), Q value = 0.99

Table S18600.  Gene #1768: 'IGFBP3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
IGFBP3 MUTATED 3 2 1 2
IGFBP3 WILD-TYPE 109 94 91 184
'IGFBP3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.679 (Fisher's exact test), Q value = 0.96

Table S18601.  Gene #1768: 'IGFBP3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
IGFBP3 MUTATED 1 1 2 0 0 3 1
IGFBP3 WILD-TYPE 59 49 47 40 63 122 98
'IGFBP3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.614 (Fisher's exact test), Q value = 0.91

Table S18602.  Gene #1768: 'IGFBP3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
IGFBP3 MUTATED 2 0 1 5
IGFBP3 WILD-TYPE 128 78 67 191
'IGFBP3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.981 (Fisher's exact test), Q value = 1

Table S18603.  Gene #1768: 'IGFBP3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
IGFBP3 MUTATED 0 2 0 1 1 1 1 0 2
IGFBP3 WILD-TYPE 40 60 28 79 68 47 42 28 72
'RELA MUTATION STATUS' versus 'CN_CNMF'

P value = 0.165 (Fisher's exact test), Q value = 0.46

Table S18604.  Gene #1769: 'RELA MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
RELA MUTATED 7 3 0 0
RELA WILD-TYPE 171 180 101 20
'RELA MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0458 (Fisher's exact test), Q value = 0.23

Table S18605.  Gene #1769: 'RELA MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
RELA MUTATED 0 2 6
RELA WILD-TYPE 87 78 94

Figure S4611.  Get High-res Image Gene #1769: 'RELA MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'RELA MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.832 (Fisher's exact test), Q value = 1

Table S18606.  Gene #1769: 'RELA MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
RELA MUTATED 1 4 4
RELA WILD-TYPE 88 156 134
'RELA MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.824 (Fisher's exact test), Q value = 1

Table S18607.  Gene #1769: 'RELA MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
RELA MUTATED 4 4 1
RELA WILD-TYPE 178 129 71
'RELA MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.395 (Fisher's exact test), Q value = 0.72

Table S18608.  Gene #1769: 'RELA MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
RELA MUTATED 2 4 2 2
RELA WILD-TYPE 110 92 90 184
'RELA MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0225 (Fisher's exact test), Q value = 0.15

Table S18609.  Gene #1769: 'RELA MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
RELA MUTATED 1 3 3 1 0 0 2
RELA WILD-TYPE 59 47 46 39 63 125 97

Figure S4612.  Get High-res Image Gene #1769: 'RELA MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'RELA MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.205 (Fisher's exact test), Q value = 0.51

Table S18610.  Gene #1769: 'RELA MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
RELA MUTATED 4 0 3 3
RELA WILD-TYPE 126 78 65 193
'RELA MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0274 (Fisher's exact test), Q value = 0.17

Table S18611.  Gene #1769: 'RELA MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
RELA MUTATED 2 0 0 1 5 0 2 0 0
RELA WILD-TYPE 38 62 28 79 64 48 41 28 74

Figure S4613.  Get High-res Image Gene #1769: 'RELA MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'RELA MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.78 (Fisher's exact test), Q value = 1

Table S18612.  Gene #1769: 'RELA MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
RELA MUTATED 1 0 1 1
RELA WILD-TYPE 32 31 26 18
'RELA MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.139 (Fisher's exact test), Q value = 0.42

Table S18613.  Gene #1769: 'RELA MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
RELA MUTATED 0 0 2 1
RELA WILD-TYPE 54 10 22 21
'KCNA3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00849 (Fisher's exact test), Q value = 0.086

Table S18614.  Gene #1770: 'KCNA3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
KCNA3 MUTATED 3 0 0 3
KCNA3 WILD-TYPE 43 58 64 40

Figure S4614.  Get High-res Image Gene #1770: 'KCNA3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'KCNA3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0581 (Fisher's exact test), Q value = 0.26

Table S18615.  Gene #1770: 'KCNA3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
KCNA3 MUTATED 3 0 3
KCNA3 WILD-TYPE 48 83 74
'KCNA3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00243 (Fisher's exact test), Q value = 0.043

Table S18616.  Gene #1770: 'KCNA3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
KCNA3 MUTATED 14 1 4 1
KCNA3 WILD-TYPE 164 182 97 19

Figure S4615.  Get High-res Image Gene #1770: 'KCNA3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'KCNA3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.239 (Fisher's exact test), Q value = 0.56

Table S18617.  Gene #1770: 'KCNA3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
KCNA3 MUTATED 5 1 6
KCNA3 WILD-TYPE 82 79 94
'KCNA3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.77 (Fisher's exact test), Q value = 1

Table S18618.  Gene #1770: 'KCNA3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
KCNA3 MUTATED 2 5 6
KCNA3 WILD-TYPE 87 155 132
'KCNA3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.867 (Fisher's exact test), Q value = 1

Table S18619.  Gene #1770: 'KCNA3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
KCNA3 MUTATED 6 4 3
KCNA3 WILD-TYPE 176 129 69
'KCNA3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.121 (Fisher's exact test), Q value = 0.39

Table S18620.  Gene #1770: 'KCNA3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
KCNA3 MUTATED 2 8 4 6
KCNA3 WILD-TYPE 110 88 88 180
'KCNA3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00203 (Fisher's exact test), Q value = 0.038

Table S18621.  Gene #1770: 'KCNA3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
KCNA3 MUTATED 2 4 6 0 3 0 5
KCNA3 WILD-TYPE 58 46 43 40 60 125 94

Figure S4616.  Get High-res Image Gene #1770: 'KCNA3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'KCNA3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.47 (Fisher's exact test), Q value = 0.8

Table S18622.  Gene #1770: 'KCNA3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
KCNA3 MUTATED 6 5 1 7
KCNA3 WILD-TYPE 124 73 67 189
'KCNA3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.174 (Fisher's exact test), Q value = 0.47

Table S18623.  Gene #1770: 'KCNA3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
KCNA3 MUTATED 2 4 1 3 7 1 0 0 1
KCNA3 WILD-TYPE 38 58 27 77 62 47 43 28 73
'KCNA3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0969 (Fisher's exact test), Q value = 0.34

Table S18624.  Gene #1770: 'KCNA3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
KCNA3 MUTATED 2 0 0 2
KCNA3 WILD-TYPE 31 31 27 17
'KCNA3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.676 (Fisher's exact test), Q value = 0.96

Table S18625.  Gene #1770: 'KCNA3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
KCNA3 MUTATED 2 0 2 0
KCNA3 WILD-TYPE 52 10 22 22
'CPT1B MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.122 (Fisher's exact test), Q value = 0.39

Table S18626.  Gene #1771: 'CPT1B MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
CPT1B MUTATED 2 0 0 1
CPT1B WILD-TYPE 44 58 64 42
'CPT1B MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0137 (Fisher's exact test), Q value = 0.12

Table S18627.  Gene #1771: 'CPT1B MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
CPT1B MUTATED 3 0 0
CPT1B WILD-TYPE 48 83 77

Figure S4617.  Get High-res Image Gene #1771: 'CPT1B MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'CPT1B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0293 (Fisher's exact test), Q value = 0.18

Table S18628.  Gene #1771: 'CPT1B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
CPT1B MUTATED 9 2 0 0
CPT1B WILD-TYPE 169 181 101 20

Figure S4618.  Get High-res Image Gene #1771: 'CPT1B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'CPT1B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S18629.  Gene #1771: 'CPT1B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
CPT1B MUTATED 2 2 3
CPT1B WILD-TYPE 85 78 97
'CPT1B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.604 (Fisher's exact test), Q value = 0.91

Table S18630.  Gene #1771: 'CPT1B MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
CPT1B MUTATED 1 4 5
CPT1B WILD-TYPE 88 156 133
'CPT1B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.529 (Fisher's exact test), Q value = 0.85

Table S18631.  Gene #1771: 'CPT1B MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
CPT1B MUTATED 5 2 3
CPT1B WILD-TYPE 177 131 69
'CPT1B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.925 (Fisher's exact test), Q value = 1

Table S18632.  Gene #1771: 'CPT1B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
CPT1B MUTATED 2 2 3 4
CPT1B WILD-TYPE 110 94 89 182
'CPT1B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00251 (Fisher's exact test), Q value = 0.044

Table S18633.  Gene #1771: 'CPT1B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
CPT1B MUTATED 0 0 5 1 1 0 4
CPT1B WILD-TYPE 60 50 44 39 62 125 95

Figure S4619.  Get High-res Image Gene #1771: 'CPT1B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CPT1B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S18634.  Gene #1771: 'CPT1B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
CPT1B MUTATED 3 2 1 5
CPT1B WILD-TYPE 127 76 67 191
'CPT1B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0107 (Fisher's exact test), Q value = 0.1

Table S18635.  Gene #1771: 'CPT1B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
CPT1B MUTATED 1 3 0 0 6 0 1 0 0
CPT1B WILD-TYPE 39 59 28 80 63 48 42 28 74

Figure S4620.  Get High-res Image Gene #1771: 'CPT1B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'CPT1B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0708 (Fisher's exact test), Q value = 0.29

Table S18636.  Gene #1771: 'CPT1B MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
CPT1B MUTATED 1 0 1 3
CPT1B WILD-TYPE 32 31 26 16
'CPT1B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.522 (Fisher's exact test), Q value = 0.84

Table S18637.  Gene #1771: 'CPT1B MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
CPT1B MUTATED 3 1 1 0
CPT1B WILD-TYPE 51 9 23 22
'SLC14A1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.284 (Fisher's exact test), Q value = 0.61

Table S18638.  Gene #1772: 'SLC14A1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
SLC14A1 MUTATED 5 2 0 0
SLC14A1 WILD-TYPE 173 181 101 20
'SLC14A1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S18639.  Gene #1772: 'SLC14A1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
SLC14A1 MUTATED 2 1 2
SLC14A1 WILD-TYPE 85 79 98
'SLC14A1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.635 (Fisher's exact test), Q value = 0.93

Table S18640.  Gene #1772: 'SLC14A1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
SLC14A1 MUTATED 0 3 2
SLC14A1 WILD-TYPE 89 157 136
'SLC14A1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S18641.  Gene #1772: 'SLC14A1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
SLC14A1 MUTATED 2 2 1
SLC14A1 WILD-TYPE 180 131 71
'SLC14A1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.796 (Fisher's exact test), Q value = 1

Table S18642.  Gene #1772: 'SLC14A1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
SLC14A1 MUTATED 2 1 2 2
SLC14A1 WILD-TYPE 110 95 90 184
'SLC14A1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.391 (Fisher's exact test), Q value = 0.72

Table S18643.  Gene #1772: 'SLC14A1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
SLC14A1 MUTATED 0 1 2 0 2 1 1
SLC14A1 WILD-TYPE 60 49 47 40 61 124 98
'SLC14A1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.308 (Fisher's exact test), Q value = 0.64

Table S18644.  Gene #1772: 'SLC14A1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
SLC14A1 MUTATED 1 3 1 2
SLC14A1 WILD-TYPE 129 75 67 194
'SLC14A1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.8 (Fisher's exact test), Q value = 1

Table S18645.  Gene #1772: 'SLC14A1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
SLC14A1 MUTATED 0 2 0 1 2 1 1 0 0
SLC14A1 WILD-TYPE 40 60 28 79 67 47 42 28 74
'SLC14A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.873 (Fisher's exact test), Q value = 1

Table S18646.  Gene #1772: 'SLC14A1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
SLC14A1 MUTATED 1 1 0 1
SLC14A1 WILD-TYPE 32 30 27 18
'SLC14A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.111 (Fisher's exact test), Q value = 0.37

Table S18647.  Gene #1772: 'SLC14A1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
SLC14A1 MUTATED 0 0 1 2
SLC14A1 WILD-TYPE 54 10 23 20
'PLEKHH2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00075 (Fisher's exact test), Q value = 0.02

Table S18648.  Gene #1773: 'PLEKHH2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
PLEKHH2 MUTATED 4 0 0 5
PLEKHH2 WILD-TYPE 42 58 64 38

Figure S4621.  Get High-res Image Gene #1773: 'PLEKHH2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'PLEKHH2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0961 (Fisher's exact test), Q value = 0.34

Table S18649.  Gene #1773: 'PLEKHH2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
PLEKHH2 MUTATED 5 2 2
PLEKHH2 WILD-TYPE 46 81 75
'PLEKHH2 MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S18650.  Gene #1773: 'PLEKHH2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
PLEKHH2 MUTATED 20 1 1 0
PLEKHH2 WILD-TYPE 158 182 100 20

Figure S4622.  Get High-res Image Gene #1773: 'PLEKHH2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'PLEKHH2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.397 (Fisher's exact test), Q value = 0.72

Table S18651.  Gene #1773: 'PLEKHH2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
PLEKHH2 MUTATED 6 2 4
PLEKHH2 WILD-TYPE 81 78 96
'PLEKHH2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.792 (Fisher's exact test), Q value = 1

Table S18652.  Gene #1773: 'PLEKHH2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
PLEKHH2 MUTATED 3 9 7
PLEKHH2 WILD-TYPE 86 151 131
'PLEKHH2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.299 (Fisher's exact test), Q value = 0.63

Table S18653.  Gene #1773: 'PLEKHH2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
PLEKHH2 MUTATED 10 8 1
PLEKHH2 WILD-TYPE 172 125 71
'PLEKHH2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.281 (Fisher's exact test), Q value = 0.61

Table S18654.  Gene #1773: 'PLEKHH2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
PLEKHH2 MUTATED 3 8 3 9
PLEKHH2 WILD-TYPE 109 88 89 177
'PLEKHH2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00569 (Fisher's exact test), Q value = 0.068

Table S18655.  Gene #1773: 'PLEKHH2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
PLEKHH2 MUTATED 2 4 6 0 2 1 8
PLEKHH2 WILD-TYPE 58 46 43 40 61 124 91

Figure S4623.  Get High-res Image Gene #1773: 'PLEKHH2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'PLEKHH2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.61 (Fisher's exact test), Q value = 0.91

Table S18656.  Gene #1773: 'PLEKHH2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
PLEKHH2 MUTATED 6 4 1 11
PLEKHH2 WILD-TYPE 124 74 67 185
'PLEKHH2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.012 (Fisher's exact test), Q value = 0.11

Table S18657.  Gene #1773: 'PLEKHH2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
PLEKHH2 MUTATED 3 3 2 4 9 0 0 0 1
PLEKHH2 WILD-TYPE 37 59 26 76 60 48 43 28 73

Figure S4624.  Get High-res Image Gene #1773: 'PLEKHH2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'PLEKHH2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.269 (Fisher's exact test), Q value = 0.59

Table S18658.  Gene #1773: 'PLEKHH2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
PLEKHH2 MUTATED 1 0 1 2
PLEKHH2 WILD-TYPE 32 31 26 17
'PLEKHH2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.603 (Fisher's exact test), Q value = 0.91

Table S18659.  Gene #1773: 'PLEKHH2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
PLEKHH2 MUTATED 2 1 1 0
PLEKHH2 WILD-TYPE 52 9 23 22
'ESRP2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0651 (Fisher's exact test), Q value = 0.28

Table S18660.  Gene #1774: 'ESRP2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ESRP2 MUTATED 1 0 0 2
ESRP2 WILD-TYPE 45 58 64 41
'ESRP2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.254 (Fisher's exact test), Q value = 0.58

Table S18661.  Gene #1774: 'ESRP2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ESRP2 MUTATED 2 1 0
ESRP2 WILD-TYPE 49 82 77
'ESRP2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.165 (Fisher's exact test), Q value = 0.46

Table S18662.  Gene #1774: 'ESRP2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ESRP2 MUTATED 5 1 2 1
ESRP2 WILD-TYPE 173 182 99 19
'ESRP2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.712 (Fisher's exact test), Q value = 0.98

Table S18663.  Gene #1774: 'ESRP2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ESRP2 MUTATED 3 1 3
ESRP2 WILD-TYPE 84 79 97
'ESRP2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.832 (Fisher's exact test), Q value = 1

Table S18664.  Gene #1774: 'ESRP2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ESRP2 MUTATED 1 4 4
ESRP2 WILD-TYPE 88 156 134
'ESRP2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.823 (Fisher's exact test), Q value = 1

Table S18665.  Gene #1774: 'ESRP2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ESRP2 MUTATED 4 4 1
ESRP2 WILD-TYPE 178 129 71
'ESRP2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.659 (Fisher's exact test), Q value = 0.95

Table S18666.  Gene #1774: 'ESRP2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ESRP2 MUTATED 3 1 3 3
ESRP2 WILD-TYPE 109 95 89 183
'ESRP2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.166 (Fisher's exact test), Q value = 0.46

Table S18667.  Gene #1774: 'ESRP2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ESRP2 MUTATED 2 0 1 1 2 0 4
ESRP2 WILD-TYPE 58 50 48 39 61 125 95
'ESRP2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.783 (Fisher's exact test), Q value = 1

Table S18668.  Gene #1774: 'ESRP2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ESRP2 MUTATED 2 2 2 3
ESRP2 WILD-TYPE 128 76 66 193
'ESRP2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.433 (Fisher's exact test), Q value = 0.76

Table S18669.  Gene #1774: 'ESRP2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ESRP2 MUTATED 2 2 1 0 2 0 1 0 1
ESRP2 WILD-TYPE 38 60 27 80 67 48 42 28 73
'ESRP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.267 (Fisher's exact test), Q value = 0.59

Table S18670.  Gene #1774: 'ESRP2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
ESRP2 MUTATED 1 0 1 2
ESRP2 WILD-TYPE 32 31 26 17
'ESRP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.765 (Fisher's exact test), Q value = 1

Table S18671.  Gene #1774: 'ESRP2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
ESRP2 MUTATED 3 0 0 1
ESRP2 WILD-TYPE 51 10 24 21
'MMP21 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0312 (Fisher's exact test), Q value = 0.18

Table S18672.  Gene #1775: 'MMP21 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
MMP21 MUTATED 3 0 0 1
MMP21 WILD-TYPE 43 58 64 42

Figure S4625.  Get High-res Image Gene #1775: 'MMP21 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'MMP21 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.554 (Fisher's exact test), Q value = 0.87

Table S18673.  Gene #1775: 'MMP21 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
MMP21 MUTATED 2 1 1
MMP21 WILD-TYPE 49 82 76
'MMP21 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0022 (Fisher's exact test), Q value = 0.04

Table S18674.  Gene #1775: 'MMP21 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
MMP21 MUTATED 11 1 0 0
MMP21 WILD-TYPE 167 182 101 20

Figure S4626.  Get High-res Image Gene #1775: 'MMP21 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'MMP21 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.494 (Fisher's exact test), Q value = 0.82

Table S18675.  Gene #1775: 'MMP21 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
MMP21 MUTATED 4 1 3
MMP21 WILD-TYPE 83 79 97
'MMP21 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.6 (Fisher's exact test), Q value = 0.9

Table S18676.  Gene #1775: 'MMP21 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
MMP21 MUTATED 1 4 5
MMP21 WILD-TYPE 88 156 133
'MMP21 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.636 (Fisher's exact test), Q value = 0.93

Table S18677.  Gene #1775: 'MMP21 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
MMP21 MUTATED 4 5 1
MMP21 WILD-TYPE 178 128 71
'MMP21 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.611 (Fisher's exact test), Q value = 0.91

Table S18678.  Gene #1775: 'MMP21 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
MMP21 MUTATED 1 3 3 5
MMP21 WILD-TYPE 111 93 89 181
'MMP21 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.485 (Fisher's exact test), Q value = 0.81

Table S18679.  Gene #1775: 'MMP21 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
MMP21 MUTATED 2 1 3 1 1 1 3
MMP21 WILD-TYPE 58 49 46 39 62 124 96
'MMP21 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.502 (Fisher's exact test), Q value = 0.83

Table S18680.  Gene #1775: 'MMP21 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
MMP21 MUTATED 5 2 0 5
MMP21 WILD-TYPE 125 76 68 191
'MMP21 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.347 (Fisher's exact test), Q value = 0.67

Table S18681.  Gene #1775: 'MMP21 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
MMP21 MUTATED 1 3 0 1 5 1 0 0 1
MMP21 WILD-TYPE 39 59 28 79 64 47 43 28 73
'MMP21 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00456 (Fisher's exact test), Q value = 0.061

Table S18682.  Gene #1775: 'MMP21 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
MMP21 MUTATED 0 0 0 3
MMP21 WILD-TYPE 33 31 27 16

Figure S4627.  Get High-res Image Gene #1775: 'MMP21 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'MMP21 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S18683.  Gene #1775: 'MMP21 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
MMP21 MUTATED 2 0 1 0
MMP21 WILD-TYPE 52 10 23 22
'IL6R MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.628 (Fisher's exact test), Q value = 0.92

Table S18684.  Gene #1776: 'IL6R MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
IL6R MUTATED 1 1 0 1
IL6R WILD-TYPE 45 57 64 42
'IL6R MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.253 (Fisher's exact test), Q value = 0.58

Table S18685.  Gene #1776: 'IL6R MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
IL6R MUTATED 2 1 0
IL6R WILD-TYPE 49 82 77
'IL6R MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0598 (Fisher's exact test), Q value = 0.27

Table S18686.  Gene #1776: 'IL6R MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
IL6R MUTATED 7 1 0 0
IL6R WILD-TYPE 171 182 101 20
'IL6R MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S18687.  Gene #1776: 'IL6R MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
IL6R MUTATED 2 1 2
IL6R WILD-TYPE 85 79 98
'IL6R MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.489 (Fisher's exact test), Q value = 0.82

Table S18688.  Gene #1776: 'IL6R MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
IL6R MUTATED 3 2 2
IL6R WILD-TYPE 86 158 136
'IL6R MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.259 (Fisher's exact test), Q value = 0.58

Table S18689.  Gene #1776: 'IL6R MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
IL6R MUTATED 2 2 3
IL6R WILD-TYPE 180 131 69
'IL6R MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.828 (Fisher's exact test), Q value = 1

Table S18690.  Gene #1776: 'IL6R MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
IL6R MUTATED 1 1 2 4
IL6R WILD-TYPE 111 95 90 182
'IL6R MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.16 (Fisher's exact test), Q value = 0.45

Table S18691.  Gene #1776: 'IL6R MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
IL6R MUTATED 1 0 3 0 0 1 3
IL6R WILD-TYPE 59 50 46 40 63 124 96
'IL6R MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.817 (Fisher's exact test), Q value = 1

Table S18692.  Gene #1776: 'IL6R MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
IL6R MUTATED 1 2 1 4
IL6R WILD-TYPE 129 76 67 192
'IL6R MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.524 (Fisher's exact test), Q value = 0.85

Table S18693.  Gene #1776: 'IL6R MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
IL6R MUTATED 0 2 0 0 3 1 0 0 2
IL6R WILD-TYPE 40 60 28 80 66 47 43 28 72
'KSR2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.31 (Fisher's exact test), Q value = 0.64

Table S18694.  Gene #1777: 'KSR2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
KSR2 MUTATED 1 1 0 2
KSR2 WILD-TYPE 45 57 64 41
'KSR2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.682 (Fisher's exact test), Q value = 0.96

Table S18695.  Gene #1777: 'KSR2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
KSR2 MUTATED 0 2 2
KSR2 WILD-TYPE 51 81 75
'KSR2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00013 (Fisher's exact test), Q value = 0.0063

Table S18696.  Gene #1777: 'KSR2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
KSR2 MUTATED 18 1 2 0
KSR2 WILD-TYPE 160 182 99 20

Figure S4628.  Get High-res Image Gene #1777: 'KSR2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'KSR2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0411 (Fisher's exact test), Q value = 0.21

Table S18697.  Gene #1777: 'KSR2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
KSR2 MUTATED 6 1 10
KSR2 WILD-TYPE 81 79 90

Figure S4629.  Get High-res Image Gene #1777: 'KSR2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'KSR2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0922 (Fisher's exact test), Q value = 0.33

Table S18698.  Gene #1777: 'KSR2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
KSR2 MUTATED 1 6 10
KSR2 WILD-TYPE 88 154 128
'KSR2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.193 (Fisher's exact test), Q value = 0.5

Table S18699.  Gene #1777: 'KSR2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
KSR2 MUTATED 7 9 1
KSR2 WILD-TYPE 175 124 71
'KSR2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00495 (Fisher's exact test), Q value = 0.064

Table S18700.  Gene #1777: 'KSR2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
KSR2 MUTATED 1 10 5 5
KSR2 WILD-TYPE 111 86 87 181

Figure S4630.  Get High-res Image Gene #1777: 'KSR2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'KSR2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00128 (Fisher's exact test), Q value = 0.029

Table S18701.  Gene #1777: 'KSR2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
KSR2 MUTATED 1 5 8 1 2 2 2
KSR2 WILD-TYPE 59 45 41 39 61 123 97

Figure S4631.  Get High-res Image Gene #1777: 'KSR2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'KSR2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.188 (Fisher's exact test), Q value = 0.49

Table S18702.  Gene #1777: 'KSR2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
KSR2 MUTATED 8 4 0 9
KSR2 WILD-TYPE 122 74 68 187
'KSR2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.624 (Fisher's exact test), Q value = 0.92

Table S18703.  Gene #1777: 'KSR2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
KSR2 MUTATED 1 2 1 5 6 1 3 0 2
KSR2 WILD-TYPE 39 60 27 75 63 47 40 28 72
'KSR2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.104 (Fisher's exact test), Q value = 0.36

Table S18704.  Gene #1777: 'KSR2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
KSR2 MUTATED 1 2 0 3
KSR2 WILD-TYPE 32 29 27 16
'KSR2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.925 (Fisher's exact test), Q value = 1

Table S18705.  Gene #1777: 'KSR2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
KSR2 MUTATED 3 0 2 1
KSR2 WILD-TYPE 51 10 22 21
'ZNF443 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.447 (Fisher's exact test), Q value = 0.77

Table S18706.  Gene #1778: 'ZNF443 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ZNF443 MUTATED 1 1 1 3
ZNF443 WILD-TYPE 45 57 63 40
'ZNF443 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.581 (Fisher's exact test), Q value = 0.89

Table S18707.  Gene #1778: 'ZNF443 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ZNF443 MUTATED 2 1 3
ZNF443 WILD-TYPE 49 82 74
'ZNF443 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00176 (Fisher's exact test), Q value = 0.035

Table S18708.  Gene #1778: 'ZNF443 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ZNF443 MUTATED 9 0 0 0
ZNF443 WILD-TYPE 169 183 101 20

Figure S4632.  Get High-res Image Gene #1778: 'ZNF443 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ZNF443 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.512 (Fisher's exact test), Q value = 0.83

Table S18709.  Gene #1778: 'ZNF443 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ZNF443 MUTATED 2 0 1
ZNF443 WILD-TYPE 85 80 99
'ZNF443 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.31 (Fisher's exact test), Q value = 0.64

Table S18710.  Gene #1778: 'ZNF443 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ZNF443 MUTATED 0 4 4
ZNF443 WILD-TYPE 89 156 134
'ZNF443 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.51 (Fisher's exact test), Q value = 0.83

Table S18711.  Gene #1778: 'ZNF443 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ZNF443 MUTATED 4 4 0
ZNF443 WILD-TYPE 178 129 72
'ZNF443 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.199 (Fisher's exact test), Q value = 0.5

Table S18712.  Gene #1778: 'ZNF443 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ZNF443 MUTATED 0 1 2 6
ZNF443 WILD-TYPE 112 95 90 180
'ZNF443 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.791 (Fisher's exact test), Q value = 1

Table S18713.  Gene #1778: 'ZNF443 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ZNF443 MUTATED 1 0 2 0 1 2 3
ZNF443 WILD-TYPE 59 50 47 40 62 123 96
'ZNF443 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.438 (Fisher's exact test), Q value = 0.76

Table S18714.  Gene #1778: 'ZNF443 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ZNF443 MUTATED 1 2 0 5
ZNF443 WILD-TYPE 129 76 68 191
'ZNF443 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.634 (Fisher's exact test), Q value = 0.93

Table S18715.  Gene #1778: 'ZNF443 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ZNF443 MUTATED 0 2 1 1 1 1 1 1 0
ZNF443 WILD-TYPE 40 60 27 79 68 47 42 27 74
'PDSS2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.102 (Fisher's exact test), Q value = 0.35

Table S18716.  Gene #1779: 'PDSS2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
PDSS2 MUTATED 4 1 0 1
PDSS2 WILD-TYPE 174 182 101 19
'PDSS2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.324 (Fisher's exact test), Q value = 0.65

Table S18717.  Gene #1779: 'PDSS2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
PDSS2 MUTATED 0 1 3
PDSS2 WILD-TYPE 87 79 97
'PDSS2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S18718.  Gene #1779: 'PDSS2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
PDSS2 MUTATED 1 3 2
PDSS2 WILD-TYPE 88 157 136
'PDSS2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S18719.  Gene #1779: 'PDSS2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
PDSS2 MUTATED 3 2 1
PDSS2 WILD-TYPE 179 131 71
'PDSS2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.314 (Fisher's exact test), Q value = 0.64

Table S18720.  Gene #1779: 'PDSS2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
PDSS2 MUTATED 1 3 0 2
PDSS2 WILD-TYPE 111 93 92 184
'PDSS2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.193 (Fisher's exact test), Q value = 0.5

Table S18721.  Gene #1779: 'PDSS2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
PDSS2 MUTATED 1 2 1 0 0 0 2
PDSS2 WILD-TYPE 59 48 48 40 63 125 97
'PDSS2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.833 (Fisher's exact test), Q value = 1

Table S18722.  Gene #1779: 'PDSS2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
PDSS2 MUTATED 2 0 1 3
PDSS2 WILD-TYPE 128 78 67 193
'PDSS2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.224 (Fisher's exact test), Q value = 0.54

Table S18723.  Gene #1779: 'PDSS2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
PDSS2 MUTATED 0 0 1 1 2 0 2 0 0
PDSS2 WILD-TYPE 40 62 27 79 67 48 41 28 74
'ACTN1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0081 (Fisher's exact test), Q value = 0.084

Table S18724.  Gene #1780: 'ACTN1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ACTN1 MUTATED 0 0 0 3
ACTN1 WILD-TYPE 46 58 64 40

Figure S4633.  Get High-res Image Gene #1780: 'ACTN1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'ACTN1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S18725.  Gene #1780: 'ACTN1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ACTN1 MUTATED 1 1 1
ACTN1 WILD-TYPE 50 82 76
'ACTN1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0287 (Fisher's exact test), Q value = 0.17

Table S18726.  Gene #1780: 'ACTN1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ACTN1 MUTATED 9 1 2 1
ACTN1 WILD-TYPE 169 182 99 19

Figure S4634.  Get High-res Image Gene #1780: 'ACTN1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ACTN1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.104 (Fisher's exact test), Q value = 0.36

Table S18727.  Gene #1780: 'ACTN1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ACTN1 MUTATED 6 2 1
ACTN1 WILD-TYPE 81 78 99
'ACTN1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.868 (Fisher's exact test), Q value = 1

Table S18728.  Gene #1780: 'ACTN1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ACTN1 MUTATED 2 6 4
ACTN1 WILD-TYPE 87 154 134
'ACTN1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.542 (Fisher's exact test), Q value = 0.86

Table S18729.  Gene #1780: 'ACTN1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ACTN1 MUTATED 5 6 1
ACTN1 WILD-TYPE 177 127 71
'ACTN1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.601 (Fisher's exact test), Q value = 0.9

Table S18730.  Gene #1780: 'ACTN1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ACTN1 MUTATED 3 1 4 5
ACTN1 WILD-TYPE 109 95 88 181
'ACTN1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0401 (Fisher's exact test), Q value = 0.21

Table S18731.  Gene #1780: 'ACTN1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ACTN1 MUTATED 3 1 3 0 1 0 5
ACTN1 WILD-TYPE 57 49 46 40 62 125 94

Figure S4635.  Get High-res Image Gene #1780: 'ACTN1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ACTN1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.532 (Fisher's exact test), Q value = 0.85

Table S18732.  Gene #1780: 'ACTN1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ACTN1 MUTATED 4 2 0 7
ACTN1 WILD-TYPE 126 76 68 189
'ACTN1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.284 (Fisher's exact test), Q value = 0.61

Table S18733.  Gene #1780: 'ACTN1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ACTN1 MUTATED 1 2 2 1 5 1 0 0 1
ACTN1 WILD-TYPE 39 60 26 79 64 47 43 28 73
'ACTN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.145 (Fisher's exact test), Q value = 0.42

Table S18734.  Gene #1780: 'ACTN1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
ACTN1 MUTATED 3 0 0 1
ACTN1 WILD-TYPE 30 31 27 18
'ACTN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.671 (Fisher's exact test), Q value = 0.95

Table S18735.  Gene #1780: 'ACTN1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
ACTN1 MUTATED 2 0 2 0
ACTN1 WILD-TYPE 52 10 22 22
'CCPG1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.113 (Fisher's exact test), Q value = 0.37

Table S18736.  Gene #1781: 'CCPG1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
CCPG1 MUTATED 2 0 1 3
CCPG1 WILD-TYPE 44 58 63 40
'CCPG1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.337 (Fisher's exact test), Q value = 0.66

Table S18737.  Gene #1781: 'CCPG1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
CCPG1 MUTATED 3 2 1
CCPG1 WILD-TYPE 48 81 76
'CCPG1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0162 (Fisher's exact test), Q value = 0.13

Table S18738.  Gene #1781: 'CCPG1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
CCPG1 MUTATED 10 1 1 0
CCPG1 WILD-TYPE 168 182 100 20

Figure S4636.  Get High-res Image Gene #1781: 'CCPG1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'CCPG1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.14 (Fisher's exact test), Q value = 0.42

Table S18739.  Gene #1781: 'CCPG1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
CCPG1 MUTATED 4 0 2
CCPG1 WILD-TYPE 83 80 98
'CCPG1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00867 (Fisher's exact test), Q value = 0.087

Table S18740.  Gene #1781: 'CCPG1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
CCPG1 MUTATED 0 1 7
CCPG1 WILD-TYPE 89 159 131

Figure S4637.  Get High-res Image Gene #1781: 'CCPG1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'CCPG1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.565 (Fisher's exact test), Q value = 0.87

Table S18741.  Gene #1781: 'CCPG1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
CCPG1 MUTATED 5 3 0
CCPG1 WILD-TYPE 177 130 72
'CCPG1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.144 (Fisher's exact test), Q value = 0.42

Table S18742.  Gene #1781: 'CCPG1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
CCPG1 MUTATED 0 4 3 5
CCPG1 WILD-TYPE 112 92 89 181
'CCPG1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0116 (Fisher's exact test), Q value = 0.11

Table S18743.  Gene #1781: 'CCPG1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
CCPG1 MUTATED 0 1 5 1 0 1 4
CCPG1 WILD-TYPE 60 49 44 39 63 124 95

Figure S4638.  Get High-res Image Gene #1781: 'CCPG1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CCPG1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.681 (Fisher's exact test), Q value = 0.96

Table S18744.  Gene #1781: 'CCPG1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
CCPG1 MUTATED 2 3 2 4
CCPG1 WILD-TYPE 128 75 66 192
'CCPG1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.464 (Fisher's exact test), Q value = 0.79

Table S18745.  Gene #1781: 'CCPG1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
CCPG1 MUTATED 0 2 1 1 4 0 0 1 2
CCPG1 WILD-TYPE 40 60 27 79 65 48 43 27 72
'CCPG1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.256 (Fisher's exact test), Q value = 0.58

Table S18746.  Gene #1781: 'CCPG1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
CCPG1 MUTATED 2 0 0 1
CCPG1 WILD-TYPE 31 31 27 18
'CCPG1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.561 (Fisher's exact test), Q value = 0.87

Table S18747.  Gene #1781: 'CCPG1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
CCPG1 MUTATED 3 0 0 0
CCPG1 WILD-TYPE 51 10 24 22
'PIGC MUTATION STATUS' versus 'CN_CNMF'

P value = 0.341 (Fisher's exact test), Q value = 0.67

Table S18748.  Gene #1782: 'PIGC MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
PIGC MUTATED 3 0 1 0
PIGC WILD-TYPE 175 183 100 20
'PIGC MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S18749.  Gene #1782: 'PIGC MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
PIGC MUTATED 1 1 2
PIGC WILD-TYPE 86 79 98
'PIGC MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.553 (Fisher's exact test), Q value = 0.87

Table S18750.  Gene #1782: 'PIGC MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
PIGC MUTATED 0 3 1
PIGC WILD-TYPE 89 157 137
'PIGC MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.526 (Fisher's exact test), Q value = 0.85

Table S18751.  Gene #1782: 'PIGC MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
PIGC MUTATED 1 2 1
PIGC WILD-TYPE 181 131 71
'PIGC MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.16 (Fisher's exact test), Q value = 0.45

Table S18752.  Gene #1782: 'PIGC MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
PIGC MUTATED 1 2 1 0
PIGC WILD-TYPE 111 94 91 186
'PIGC MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.203 (Fisher's exact test), Q value = 0.51

Table S18753.  Gene #1782: 'PIGC MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
PIGC MUTATED 1 1 1 0 1 0 0
PIGC WILD-TYPE 59 49 48 40 62 125 99
'PIGC MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0272 (Fisher's exact test), Q value = 0.17

Table S18754.  Gene #1782: 'PIGC MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
PIGC MUTATED 4 0 0 0
PIGC WILD-TYPE 126 78 68 196

Figure S4639.  Get High-res Image Gene #1782: 'PIGC MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'PIGC MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.796 (Fisher's exact test), Q value = 1

Table S18755.  Gene #1782: 'PIGC MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
PIGC MUTATED 1 0 0 1 1 1 0 0 0
PIGC WILD-TYPE 39 62 28 79 68 47 43 28 74
'CNOT3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.593 (Fisher's exact test), Q value = 0.9

Table S18756.  Gene #1783: 'CNOT3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
CNOT3 MUTATED 5 2 1 0
CNOT3 WILD-TYPE 173 181 100 20
'CNOT3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S18757.  Gene #1783: 'CNOT3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
CNOT3 MUTATED 2 2 2
CNOT3 WILD-TYPE 85 78 98
'CNOT3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0304 (Fisher's exact test), Q value = 0.18

Table S18758.  Gene #1783: 'CNOT3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
CNOT3 MUTATED 2 0 5
CNOT3 WILD-TYPE 87 160 133

Figure S4640.  Get High-res Image Gene #1783: 'CNOT3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'CNOT3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.19 (Fisher's exact test), Q value = 0.49

Table S18759.  Gene #1783: 'CNOT3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
CNOT3 MUTATED 6 1 0
CNOT3 WILD-TYPE 176 132 72
'CNOT3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.769 (Fisher's exact test), Q value = 1

Table S18760.  Gene #1783: 'CNOT3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
CNOT3 MUTATED 2 2 2 2
CNOT3 WILD-TYPE 110 94 90 184
'CNOT3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0402 (Fisher's exact test), Q value = 0.21

Table S18761.  Gene #1783: 'CNOT3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
CNOT3 MUTATED 0 0 3 1 2 0 2
CNOT3 WILD-TYPE 60 50 46 39 61 125 97

Figure S4641.  Get High-res Image Gene #1783: 'CNOT3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CNOT3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.636 (Fisher's exact test), Q value = 0.93

Table S18762.  Gene #1783: 'CNOT3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
CNOT3 MUTATED 3 2 0 3
CNOT3 WILD-TYPE 127 76 68 193
'CNOT3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0676 (Fisher's exact test), Q value = 0.28

Table S18763.  Gene #1783: 'CNOT3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
CNOT3 MUTATED 1 2 1 0 4 0 0 0 0
CNOT3 WILD-TYPE 39 60 27 80 65 48 43 28 74
'TYW3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.454 (Fisher's exact test), Q value = 0.78

Table S18764.  Gene #1784: 'TYW3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
TYW3 MUTATED 3 2 1 1
TYW3 WILD-TYPE 175 181 100 19
'TYW3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.032 (Fisher's exact test), Q value = 0.18

Table S18765.  Gene #1784: 'TYW3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
TYW3 MUTATED 5 2 0
TYW3 WILD-TYPE 82 78 100

Figure S4642.  Get High-res Image Gene #1784: 'TYW3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'TYW3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0778 (Fisher's exact test), Q value = 0.3

Table S18766.  Gene #1784: 'TYW3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
TYW3 MUTATED 0 1 5
TYW3 WILD-TYPE 89 159 133
'TYW3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.335 (Fisher's exact test), Q value = 0.66

Table S18767.  Gene #1784: 'TYW3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
TYW3 MUTATED 5 1 0
TYW3 WILD-TYPE 177 132 72
'TYW3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0174 (Fisher's exact test), Q value = 0.13

Table S18768.  Gene #1784: 'TYW3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
TYW3 MUTATED 2 1 4 0
TYW3 WILD-TYPE 110 95 88 186

Figure S4643.  Get High-res Image Gene #1784: 'TYW3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'TYW3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0606 (Fisher's exact test), Q value = 0.27

Table S18769.  Gene #1784: 'TYW3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
TYW3 MUTATED 1 1 2 1 2 0 0
TYW3 WILD-TYPE 59 49 47 39 61 125 99
'TYW3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.14 (Fisher's exact test), Q value = 0.42

Table S18770.  Gene #1784: 'TYW3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
TYW3 MUTATED 4 2 0 1
TYW3 WILD-TYPE 126 76 68 195
'TYW3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.642 (Fisher's exact test), Q value = 0.93

Table S18771.  Gene #1784: 'TYW3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
TYW3 MUTATED 1 2 1 1 1 0 1 0 0
TYW3 WILD-TYPE 39 60 27 79 68 48 42 28 74
'TYW3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.344 (Fisher's exact test), Q value = 0.67

Table S18772.  Gene #1784: 'TYW3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
TYW3 MUTATED 1 2 0 2
TYW3 WILD-TYPE 32 29 27 17
'TYW3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.757 (Fisher's exact test), Q value = 1

Table S18773.  Gene #1784: 'TYW3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
TYW3 MUTATED 4 0 1 0
TYW3 WILD-TYPE 50 10 23 22
'LPPR4 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.14 (Fisher's exact test), Q value = 0.42

Table S18774.  Gene #1785: 'LPPR4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
LPPR4 MUTATED 5 3 1 4
LPPR4 WILD-TYPE 41 55 63 39
'LPPR4 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00794 (Fisher's exact test), Q value = 0.083

Table S18775.  Gene #1785: 'LPPR4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
LPPR4 MUTATED 8 2 3
LPPR4 WILD-TYPE 43 81 74

Figure S4644.  Get High-res Image Gene #1785: 'LPPR4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'LPPR4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00973 (Fisher's exact test), Q value = 0.094

Table S18776.  Gene #1785: 'LPPR4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
LPPR4 MUTATED 18 4 5 0
LPPR4 WILD-TYPE 160 179 96 20

Figure S4645.  Get High-res Image Gene #1785: 'LPPR4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'LPPR4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0182 (Fisher's exact test), Q value = 0.13

Table S18777.  Gene #1785: 'LPPR4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
LPPR4 MUTATED 6 0 8
LPPR4 WILD-TYPE 81 80 92

Figure S4646.  Get High-res Image Gene #1785: 'LPPR4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'LPPR4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.326 (Fisher's exact test), Q value = 0.66

Table S18778.  Gene #1785: 'LPPR4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
LPPR4 MUTATED 7 6 6
LPPR4 WILD-TYPE 82 154 132
'LPPR4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.316 (Fisher's exact test), Q value = 0.64

Table S18779.  Gene #1785: 'LPPR4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
LPPR4 MUTATED 7 6 6
LPPR4 WILD-TYPE 175 127 66
'LPPR4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.354 (Fisher's exact test), Q value = 0.68

Table S18780.  Gene #1785: 'LPPR4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
LPPR4 MUTATED 3 8 5 11
LPPR4 WILD-TYPE 109 88 87 175
'LPPR4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0351 (Fisher's exact test), Q value = 0.19

Table S18781.  Gene #1785: 'LPPR4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
LPPR4 MUTATED 2 2 6 1 2 3 11
LPPR4 WILD-TYPE 58 48 43 39 61 122 88

Figure S4647.  Get High-res Image Gene #1785: 'LPPR4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'LPPR4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.334 (Fisher's exact test), Q value = 0.66

Table S18782.  Gene #1785: 'LPPR4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
LPPR4 MUTATED 9 3 1 13
LPPR4 WILD-TYPE 121 75 67 183
'LPPR4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.103 (Fisher's exact test), Q value = 0.35

Table S18783.  Gene #1785: 'LPPR4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
LPPR4 MUTATED 4 3 1 2 8 4 0 2 2
LPPR4 WILD-TYPE 36 59 27 78 61 44 43 26 72
'LPPR4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.358 (Fisher's exact test), Q value = 0.69

Table S18784.  Gene #1785: 'LPPR4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
LPPR4 MUTATED 1 1 0 2
LPPR4 WILD-TYPE 32 30 27 17
'LPPR4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.869 (Fisher's exact test), Q value = 1

Table S18785.  Gene #1785: 'LPPR4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
LPPR4 MUTATED 3 0 1 0
LPPR4 WILD-TYPE 51 10 23 22
'UBR2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0103 (Fisher's exact test), Q value = 0.097

Table S18786.  Gene #1786: 'UBR2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
UBR2 MUTATED 2 0 1 5
UBR2 WILD-TYPE 44 58 63 38

Figure S4648.  Get High-res Image Gene #1786: 'UBR2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'UBR2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.528 (Fisher's exact test), Q value = 0.85

Table S18787.  Gene #1786: 'UBR2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
UBR2 MUTATED 3 2 3
UBR2 WILD-TYPE 48 81 74
'UBR2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.797 (Fisher's exact test), Q value = 1

Table S18788.  Gene #1786: 'UBR2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
UBR2 MUTATED 9 7 3 0
UBR2 WILD-TYPE 169 176 98 20
'UBR2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.794 (Fisher's exact test), Q value = 1

Table S18789.  Gene #1786: 'UBR2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
UBR2 MUTATED 4 4 3
UBR2 WILD-TYPE 83 76 97
'UBR2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.287 (Fisher's exact test), Q value = 0.62

Table S18790.  Gene #1786: 'UBR2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
UBR2 MUTATED 1 8 6
UBR2 WILD-TYPE 88 152 132
'UBR2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.129 (Fisher's exact test), Q value = 0.4

Table S18791.  Gene #1786: 'UBR2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
UBR2 MUTATED 5 9 1
UBR2 WILD-TYPE 177 124 71
'UBR2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.805 (Fisher's exact test), Q value = 1

Table S18792.  Gene #1786: 'UBR2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
UBR2 MUTATED 5 2 4 7
UBR2 WILD-TYPE 107 94 88 179
'UBR2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.118 (Fisher's exact test), Q value = 0.38

Table S18793.  Gene #1786: 'UBR2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
UBR2 MUTATED 5 2 2 0 3 1 5
UBR2 WILD-TYPE 55 48 47 40 60 124 94
'UBR2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.724 (Fisher's exact test), Q value = 0.99

Table S18794.  Gene #1786: 'UBR2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
UBR2 MUTATED 5 4 1 8
UBR2 WILD-TYPE 125 74 67 188
'UBR2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.831 (Fisher's exact test), Q value = 1

Table S18795.  Gene #1786: 'UBR2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
UBR2 MUTATED 0 4 1 4 4 1 1 1 2
UBR2 WILD-TYPE 40 58 27 76 65 47 42 27 72
'UBR2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.868 (Fisher's exact test), Q value = 1

Table S18796.  Gene #1786: 'UBR2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
UBR2 MUTATED 1 1 2 1
UBR2 WILD-TYPE 32 30 25 18
'UBR2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.293 (Fisher's exact test), Q value = 0.62

Table S18797.  Gene #1786: 'UBR2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
UBR2 MUTATED 1 1 2 1
UBR2 WILD-TYPE 53 9 22 21
'GPBP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.123 (Fisher's exact test), Q value = 0.39

Table S18798.  Gene #1787: 'GPBP1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
GPBP1 MUTATED 9 2 2 0
GPBP1 WILD-TYPE 169 181 99 20
'GPBP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0467 (Fisher's exact test), Q value = 0.23

Table S18799.  Gene #1787: 'GPBP1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
GPBP1 MUTATED 5 0 6
GPBP1 WILD-TYPE 82 80 94

Figure S4649.  Get High-res Image Gene #1787: 'GPBP1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'GPBP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.677 (Fisher's exact test), Q value = 0.96

Table S18800.  Gene #1787: 'GPBP1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
GPBP1 MUTATED 3 3 5
GPBP1 WILD-TYPE 86 157 133
'GPBP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.727 (Fisher's exact test), Q value = 0.99

Table S18801.  Gene #1787: 'GPBP1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
GPBP1 MUTATED 4 5 2
GPBP1 WILD-TYPE 178 128 70
'GPBP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00626 (Fisher's exact test), Q value = 0.073

Table S18802.  Gene #1787: 'GPBP1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
GPBP1 MUTATED 2 8 1 2
GPBP1 WILD-TYPE 110 88 91 184

Figure S4650.  Get High-res Image Gene #1787: 'GPBP1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'GPBP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0731 (Fisher's exact test), Q value = 0.29

Table S18803.  Gene #1787: 'GPBP1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
GPBP1 MUTATED 2 3 3 1 1 0 3
GPBP1 WILD-TYPE 58 47 46 39 62 125 96
'GPBP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.691 (Fisher's exact test), Q value = 0.97

Table S18804.  Gene #1787: 'GPBP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
GPBP1 MUTATED 3 1 3 6
GPBP1 WILD-TYPE 127 77 65 190
'GPBP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0854 (Fisher's exact test), Q value = 0.32

Table S18805.  Gene #1787: 'GPBP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
GPBP1 MUTATED 2 0 0 1 6 1 2 0 1
GPBP1 WILD-TYPE 38 62 28 79 63 47 41 28 73
'GPBP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.665 (Fisher's exact test), Q value = 0.95

Table S18806.  Gene #1787: 'GPBP1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
GPBP1 MUTATED 1 1 1 2
GPBP1 WILD-TYPE 32 30 26 17
'GPBP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.189 (Fisher's exact test), Q value = 0.49

Table S18807.  Gene #1787: 'GPBP1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
GPBP1 MUTATED 2 0 3 0
GPBP1 WILD-TYPE 52 10 21 22
'SPAM1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.31 (Fisher's exact test), Q value = 0.64

Table S18808.  Gene #1788: 'SPAM1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
SPAM1 MUTATED 1 1 0 2
SPAM1 WILD-TYPE 45 57 64 41
'SPAM1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.835 (Fisher's exact test), Q value = 1

Table S18809.  Gene #1788: 'SPAM1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
SPAM1 MUTATED 1 1 2
SPAM1 WILD-TYPE 50 82 75
'SPAM1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0803 (Fisher's exact test), Q value = 0.31

Table S18810.  Gene #1788: 'SPAM1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
SPAM1 MUTATED 9 4 0 0
SPAM1 WILD-TYPE 169 179 101 20
'SPAM1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S18811.  Gene #1788: 'SPAM1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
SPAM1 MUTATED 3 3 3
SPAM1 WILD-TYPE 84 77 97
'SPAM1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.809 (Fisher's exact test), Q value = 1

Table S18812.  Gene #1788: 'SPAM1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
SPAM1 MUTATED 3 4 5
SPAM1 WILD-TYPE 86 156 133
'SPAM1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.691 (Fisher's exact test), Q value = 0.97

Table S18813.  Gene #1788: 'SPAM1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
SPAM1 MUTATED 6 3 3
SPAM1 WILD-TYPE 176 130 69
'SPAM1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.733 (Fisher's exact test), Q value = 1

Table S18814.  Gene #1788: 'SPAM1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
SPAM1 MUTATED 2 2 4 5
SPAM1 WILD-TYPE 110 94 88 181
'SPAM1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.519 (Fisher's exact test), Q value = 0.84

Table S18815.  Gene #1788: 'SPAM1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
SPAM1 MUTATED 2 1 3 1 2 1 3
SPAM1 WILD-TYPE 58 49 46 39 61 124 96
'SPAM1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.757 (Fisher's exact test), Q value = 1

Table S18816.  Gene #1788: 'SPAM1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
SPAM1 MUTATED 5 2 1 4
SPAM1 WILD-TYPE 125 76 67 192
'SPAM1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.631 (Fisher's exact test), Q value = 0.93

Table S18817.  Gene #1788: 'SPAM1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
SPAM1 MUTATED 2 3 1 1 3 1 0 0 1
SPAM1 WILD-TYPE 38 59 27 79 66 47 43 28 73
'SPAM1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0862 (Fisher's exact test), Q value = 0.32

Table S18818.  Gene #1788: 'SPAM1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
SPAM1 MUTATED 0 1 0 2
SPAM1 WILD-TYPE 33 30 27 17
'SPAM1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.563 (Fisher's exact test), Q value = 0.87

Table S18819.  Gene #1788: 'SPAM1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
SPAM1 MUTATED 3 0 0 0
SPAM1 WILD-TYPE 51 10 24 22
'ZFP91 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.392 (Fisher's exact test), Q value = 0.72

Table S18820.  Gene #1789: 'ZFP91 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ZFP91 MUTATED 5 3 0 0
ZFP91 WILD-TYPE 173 180 101 20
'ZFP91 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.63 (Fisher's exact test), Q value = 0.93

Table S18821.  Gene #1789: 'ZFP91 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ZFP91 MUTATED 1 1 3
ZFP91 WILD-TYPE 86 79 97
'ZFP91 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.14 (Fisher's exact test), Q value = 0.42

Table S18822.  Gene #1789: 'ZFP91 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ZFP91 MUTATED 0 2 5
ZFP91 WILD-TYPE 89 158 133
'ZFP91 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.684 (Fisher's exact test), Q value = 0.96

Table S18823.  Gene #1789: 'ZFP91 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ZFP91 MUTATED 4 3 0
ZFP91 WILD-TYPE 178 130 72
'ZFP91 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.693 (Fisher's exact test), Q value = 0.97

Table S18824.  Gene #1789: 'ZFP91 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ZFP91 MUTATED 3 1 2 2
ZFP91 WILD-TYPE 109 95 90 184
'ZFP91 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.941 (Fisher's exact test), Q value = 1

Table S18825.  Gene #1789: 'ZFP91 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ZFP91 MUTATED 1 1 1 0 2 2 1
ZFP91 WILD-TYPE 59 49 48 40 61 123 98
'ZFP91 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.634 (Fisher's exact test), Q value = 0.93

Table S18826.  Gene #1789: 'ZFP91 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ZFP91 MUTATED 3 2 0 3
ZFP91 WILD-TYPE 127 76 68 193
'ZFP91 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.33 (Fisher's exact test), Q value = 0.66

Table S18827.  Gene #1789: 'ZFP91 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ZFP91 MUTATED 0 3 0 0 2 2 0 0 1
ZFP91 WILD-TYPE 40 59 28 80 67 46 43 28 73
'OR13C5 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.787 (Fisher's exact test), Q value = 1

Table S18828.  Gene #1790: 'OR13C5 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
OR13C5 MUTATED 1 0 1 1
OR13C5 WILD-TYPE 45 58 63 42
'OR13C5 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S18829.  Gene #1790: 'OR13C5 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
OR13C5 MUTATED 1 1 1
OR13C5 WILD-TYPE 50 82 76
'OR13C5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.627 (Fisher's exact test), Q value = 0.92

Table S18830.  Gene #1790: 'OR13C5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
OR13C5 MUTATED 4 4 3 1
OR13C5 WILD-TYPE 174 179 98 19
'OR13C5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.921 (Fisher's exact test), Q value = 1

Table S18831.  Gene #1790: 'OR13C5 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
OR13C5 MUTATED 4 3 3
OR13C5 WILD-TYPE 83 77 97
'OR13C5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.163 (Fisher's exact test), Q value = 0.46

Table S18832.  Gene #1790: 'OR13C5 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
OR13C5 MUTATED 1 4 8
OR13C5 WILD-TYPE 88 156 130
'OR13C5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.314 (Fisher's exact test), Q value = 0.64

Table S18833.  Gene #1790: 'OR13C5 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
OR13C5 MUTATED 9 3 1
OR13C5 WILD-TYPE 173 130 71
'OR13C5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.345 (Fisher's exact test), Q value = 0.67

Table S18834.  Gene #1790: 'OR13C5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
OR13C5 MUTATED 3 1 5 4
OR13C5 WILD-TYPE 109 95 87 182
'OR13C5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0827 (Fisher's exact test), Q value = 0.31

Table S18835.  Gene #1790: 'OR13C5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
OR13C5 MUTATED 3 0 3 0 4 2 1
OR13C5 WILD-TYPE 57 50 46 40 59 123 98
'OR13C5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.633 (Fisher's exact test), Q value = 0.93

Table S18836.  Gene #1790: 'OR13C5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
OR13C5 MUTATED 5 3 1 4
OR13C5 WILD-TYPE 125 75 67 192
'OR13C5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.542 (Fisher's exact test), Q value = 0.86

Table S18837.  Gene #1790: 'OR13C5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
OR13C5 MUTATED 0 4 0 2 4 1 1 0 1
OR13C5 WILD-TYPE 40 58 28 78 65 47 42 28 73
'OR13C5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.243 (Fisher's exact test), Q value = 0.57

Table S18838.  Gene #1790: 'OR13C5 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
OR13C5 MUTATED 1 3 0 0
OR13C5 WILD-TYPE 32 28 27 19
'OR13C5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.766 (Fisher's exact test), Q value = 1

Table S18839.  Gene #1790: 'OR13C5 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
OR13C5 MUTATED 3 0 0 1
OR13C5 WILD-TYPE 51 10 24 21
'SLC43A3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0547 (Fisher's exact test), Q value = 0.25

Table S18840.  Gene #1791: 'SLC43A3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
SLC43A3 MUTATED 4 0 1 2
SLC43A3 WILD-TYPE 42 58 63 41
'SLC43A3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.125 (Fisher's exact test), Q value = 0.39

Table S18841.  Gene #1791: 'SLC43A3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
SLC43A3 MUTATED 4 2 1
SLC43A3 WILD-TYPE 47 81 76
'SLC43A3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00248 (Fisher's exact test), Q value = 0.043

Table S18842.  Gene #1791: 'SLC43A3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
SLC43A3 MUTATED 8 0 3 2
SLC43A3 WILD-TYPE 170 183 98 18

Figure S4651.  Get High-res Image Gene #1791: 'SLC43A3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'SLC43A3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0044 (Fisher's exact test), Q value = 0.061

Table S18843.  Gene #1791: 'SLC43A3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
SLC43A3 MUTATED 0 0 6
SLC43A3 WILD-TYPE 87 80 94

Figure S4652.  Get High-res Image Gene #1791: 'SLC43A3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'SLC43A3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.2 (Fisher's exact test), Q value = 0.5

Table S18844.  Gene #1791: 'SLC43A3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
SLC43A3 MUTATED 1 6 1
SLC43A3 WILD-TYPE 88 154 137
'SLC43A3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0253 (Fisher's exact test), Q value = 0.16

Table S18845.  Gene #1791: 'SLC43A3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
SLC43A3 MUTATED 1 3 4
SLC43A3 WILD-TYPE 181 130 68

Figure S4653.  Get High-res Image Gene #1791: 'SLC43A3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'SLC43A3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.523 (Fisher's exact test), Q value = 0.84

Table S18846.  Gene #1791: 'SLC43A3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
SLC43A3 MUTATED 1 3 2 7
SLC43A3 WILD-TYPE 111 93 90 179
'SLC43A3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.109 (Fisher's exact test), Q value = 0.37

Table S18847.  Gene #1791: 'SLC43A3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
SLC43A3 MUTATED 1 0 3 1 1 1 6
SLC43A3 WILD-TYPE 59 50 46 39 62 124 93
'SLC43A3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.721 (Fisher's exact test), Q value = 0.99

Table S18848.  Gene #1791: 'SLC43A3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
SLC43A3 MUTATED 5 1 1 6
SLC43A3 WILD-TYPE 125 77 67 190
'SLC43A3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.286 (Fisher's exact test), Q value = 0.61

Table S18849.  Gene #1791: 'SLC43A3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
SLC43A3 MUTATED 2 1 1 3 5 0 0 0 1
SLC43A3 WILD-TYPE 38 61 27 77 64 48 43 28 73
'SLC43A3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.137 (Fisher's exact test), Q value = 0.41

Table S18850.  Gene #1791: 'SLC43A3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
SLC43A3 MUTATED 1 0 0 2
SLC43A3 WILD-TYPE 32 31 27 17
'SLC43A3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S18851.  Gene #1791: 'SLC43A3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
SLC43A3 MUTATED 2 0 1 0
SLC43A3 WILD-TYPE 52 10 23 22
'GOLGA1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.121 (Fisher's exact test), Q value = 0.39

Table S18852.  Gene #1792: 'GOLGA1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
GOLGA1 MUTATED 2 0 0 1
GOLGA1 WILD-TYPE 44 58 64 42
'GOLGA1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.254 (Fisher's exact test), Q value = 0.58

Table S18853.  Gene #1792: 'GOLGA1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
GOLGA1 MUTATED 2 1 0
GOLGA1 WILD-TYPE 49 82 77
'GOLGA1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.113 (Fisher's exact test), Q value = 0.37

Table S18854.  Gene #1792: 'GOLGA1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
GOLGA1 MUTATED 5 2 0 1
GOLGA1 WILD-TYPE 173 181 101 19
'GOLGA1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.633 (Fisher's exact test), Q value = 0.93

Table S18855.  Gene #1792: 'GOLGA1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
GOLGA1 MUTATED 1 1 3
GOLGA1 WILD-TYPE 86 79 97
'GOLGA1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.139 (Fisher's exact test), Q value = 0.42

Table S18856.  Gene #1792: 'GOLGA1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
GOLGA1 MUTATED 0 1 4
GOLGA1 WILD-TYPE 89 159 134
'GOLGA1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.507 (Fisher's exact test), Q value = 0.83

Table S18857.  Gene #1792: 'GOLGA1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
GOLGA1 MUTATED 4 1 0
GOLGA1 WILD-TYPE 178 132 72
'GOLGA1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.291 (Fisher's exact test), Q value = 0.62

Table S18858.  Gene #1792: 'GOLGA1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
GOLGA1 MUTATED 0 3 2 3
GOLGA1 WILD-TYPE 112 93 90 183
'GOLGA1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.656 (Fisher's exact test), Q value = 0.94

Table S18859.  Gene #1792: 'GOLGA1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
GOLGA1 MUTATED 1 0 2 1 1 1 2
GOLGA1 WILD-TYPE 59 50 47 39 62 124 97
'GOLGA1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.353 (Fisher's exact test), Q value = 0.68

Table S18860.  Gene #1792: 'GOLGA1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
GOLGA1 MUTATED 4 0 1 2
GOLGA1 WILD-TYPE 126 78 67 194
'GOLGA1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.478 (Fisher's exact test), Q value = 0.81

Table S18861.  Gene #1792: 'GOLGA1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
GOLGA1 MUTATED 0 1 0 2 1 0 2 1 0
GOLGA1 WILD-TYPE 40 61 28 78 68 48 41 27 74
'C5ORF36 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.255 (Fisher's exact test), Q value = 0.58

Table S18862.  Gene #1793: 'C5ORF36 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
C5ORF36 MUTATED 2 0 1 2
C5ORF36 WILD-TYPE 44 58 63 41
'C5ORF36 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.638 (Fisher's exact test), Q value = 0.93

Table S18863.  Gene #1793: 'C5ORF36 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
C5ORF36 MUTATED 2 1 2
C5ORF36 WILD-TYPE 49 82 75
'C5ORF36 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00032 (Fisher's exact test), Q value = 0.011

Table S18864.  Gene #1793: 'C5ORF36 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
C5ORF36 MUTATED 16 1 2 1
C5ORF36 WILD-TYPE 162 182 99 19

Figure S4654.  Get High-res Image Gene #1793: 'C5ORF36 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'C5ORF36 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0132 (Fisher's exact test), Q value = 0.11

Table S18865.  Gene #1793: 'C5ORF36 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
C5ORF36 MUTATED 7 0 8
C5ORF36 WILD-TYPE 80 80 92

Figure S4655.  Get High-res Image Gene #1793: 'C5ORF36 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'C5ORF36 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0358 (Fisher's exact test), Q value = 0.2

Table S18866.  Gene #1793: 'C5ORF36 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
C5ORF36 MUTATED 2 2 9
C5ORF36 WILD-TYPE 87 158 129

Figure S4656.  Get High-res Image Gene #1793: 'C5ORF36 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'C5ORF36 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.53 (Fisher's exact test), Q value = 0.85

Table S18867.  Gene #1793: 'C5ORF36 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
C5ORF36 MUTATED 8 4 1
C5ORF36 WILD-TYPE 174 129 71
'C5ORF36 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00057 (Fisher's exact test), Q value = 0.017

Table S18868.  Gene #1793: 'C5ORF36 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
C5ORF36 MUTATED 0 5 10 5
C5ORF36 WILD-TYPE 112 91 82 181

Figure S4657.  Get High-res Image Gene #1793: 'C5ORF36 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'C5ORF36 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S18869.  Gene #1793: 'C5ORF36 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
C5ORF36 MUTATED 0 1 11 1 2 1 4
C5ORF36 WILD-TYPE 60 49 38 39 61 124 95

Figure S4658.  Get High-res Image Gene #1793: 'C5ORF36 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'C5ORF36 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.087 (Fisher's exact test), Q value = 0.32

Table S18870.  Gene #1793: 'C5ORF36 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
C5ORF36 MUTATED 8 5 0 6
C5ORF36 WILD-TYPE 122 73 68 190
'C5ORF36 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0166 (Fisher's exact test), Q value = 0.13

Table S18871.  Gene #1793: 'C5ORF36 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
C5ORF36 MUTATED 0 5 1 6 6 0 1 0 0
C5ORF36 WILD-TYPE 40 57 27 74 63 48 42 28 74

Figure S4659.  Get High-res Image Gene #1793: 'C5ORF36 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'C5ORF36 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00013 (Fisher's exact test), Q value = 0.0063

Table S18872.  Gene #1793: 'C5ORF36 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
C5ORF36 MUTATED 2 0 1 7
C5ORF36 WILD-TYPE 31 31 26 12

Figure S4660.  Get High-res Image Gene #1793: 'C5ORF36 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'C5ORF36 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.684 (Fisher's exact test), Q value = 0.96

Table S18873.  Gene #1793: 'C5ORF36 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
C5ORF36 MUTATED 6 0 3 1
C5ORF36 WILD-TYPE 48 10 21 21
'CPLX4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0433 (Fisher's exact test), Q value = 0.22

Table S18874.  Gene #1794: 'CPLX4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
CPLX4 MUTATED 5 0 0 0
CPLX4 WILD-TYPE 173 183 101 20

Figure S4661.  Get High-res Image Gene #1794: 'CPLX4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'CPLX4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.848 (Fisher's exact test), Q value = 1

Table S18875.  Gene #1794: 'CPLX4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
CPLX4 MUTATED 1 3 1
CPLX4 WILD-TYPE 88 157 137
'CPLX4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.342 (Fisher's exact test), Q value = 0.67

Table S18876.  Gene #1794: 'CPLX4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
CPLX4 MUTATED 1 3 1
CPLX4 WILD-TYPE 181 130 71
'CPLX4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.376 (Fisher's exact test), Q value = 0.71

Table S18877.  Gene #1794: 'CPLX4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
CPLX4 MUTATED 2 2 0 1
CPLX4 WILD-TYPE 110 94 92 185
'CPLX4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.197 (Fisher's exact test), Q value = 0.5

Table S18878.  Gene #1794: 'CPLX4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
CPLX4 MUTATED 2 0 1 0 0 0 2
CPLX4 WILD-TYPE 58 50 48 40 63 125 97
'CPLX4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.687 (Fisher's exact test), Q value = 0.97

Table S18879.  Gene #1794: 'CPLX4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
CPLX4 MUTATED 2 0 0 3
CPLX4 WILD-TYPE 128 78 68 193
'CPLX4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.855 (Fisher's exact test), Q value = 1

Table S18880.  Gene #1794: 'CPLX4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
CPLX4 MUTATED 0 0 1 1 1 1 0 0 1
CPLX4 WILD-TYPE 40 62 27 79 68 47 43 28 73
'TEX2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00019 (Fisher's exact test), Q value = 0.008

Table S18881.  Gene #1795: 'TEX2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
TEX2 MUTATED 11 0 0 1
TEX2 WILD-TYPE 167 183 101 19

Figure S4662.  Get High-res Image Gene #1795: 'TEX2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'TEX2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0666 (Fisher's exact test), Q value = 0.28

Table S18882.  Gene #1795: 'TEX2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
TEX2 MUTATED 4 0 6
TEX2 WILD-TYPE 83 80 94
'TEX2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.39 (Fisher's exact test), Q value = 0.72

Table S18883.  Gene #1795: 'TEX2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
TEX2 MUTATED 1 4 6
TEX2 WILD-TYPE 88 156 132
'TEX2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.261 (Fisher's exact test), Q value = 0.59

Table S18884.  Gene #1795: 'TEX2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
TEX2 MUTATED 7 4 0
TEX2 WILD-TYPE 175 129 72
'TEX2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00027 (Fisher's exact test), Q value = 0.01

Table S18885.  Gene #1795: 'TEX2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
TEX2 MUTATED 0 8 3 1
TEX2 WILD-TYPE 112 88 89 185

Figure S4663.  Get High-res Image Gene #1795: 'TEX2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'TEX2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00014 (Fisher's exact test), Q value = 0.0066

Table S18886.  Gene #1795: 'TEX2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
TEX2 MUTATED 0 1 7 1 1 0 2
TEX2 WILD-TYPE 60 49 42 39 62 125 97

Figure S4664.  Get High-res Image Gene #1795: 'TEX2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'TEX2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.511 (Fisher's exact test), Q value = 0.83

Table S18887.  Gene #1795: 'TEX2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
TEX2 MUTATED 4 3 0 5
TEX2 WILD-TYPE 126 75 68 191
'TEX2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0647 (Fisher's exact test), Q value = 0.28

Table S18888.  Gene #1795: 'TEX2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
TEX2 MUTATED 2 4 1 0 4 0 0 0 1
TEX2 WILD-TYPE 38 58 27 80 65 48 43 28 73
'TEX2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00484 (Fisher's exact test), Q value = 0.063

Table S18889.  Gene #1795: 'TEX2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
TEX2 MUTATED 0 0 0 3
TEX2 WILD-TYPE 33 31 27 16

Figure S4665.  Get High-res Image Gene #1795: 'TEX2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'TEX2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S18890.  Gene #1795: 'TEX2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
TEX2 MUTATED 2 0 1 0
TEX2 WILD-TYPE 52 10 23 22
'ARHGAP28 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00454 (Fisher's exact test), Q value = 0.061

Table S18891.  Gene #1796: 'ARHGAP28 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ARHGAP28 MUTATED 4 0 0 3
ARHGAP28 WILD-TYPE 42 58 64 40

Figure S4666.  Get High-res Image Gene #1796: 'ARHGAP28 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'ARHGAP28 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0157 (Fisher's exact test), Q value = 0.12

Table S18892.  Gene #1796: 'ARHGAP28 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ARHGAP28 MUTATED 5 1 1
ARHGAP28 WILD-TYPE 46 82 76

Figure S4667.  Get High-res Image Gene #1796: 'ARHGAP28 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'ARHGAP28 MUTATION STATUS' versus 'CN_CNMF'

P value = 4e-05 (Fisher's exact test), Q value = 0.0027

Table S18893.  Gene #1796: 'ARHGAP28 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ARHGAP28 MUTATED 14 0 0 0
ARHGAP28 WILD-TYPE 164 183 101 20

Figure S4668.  Get High-res Image Gene #1796: 'ARHGAP28 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ARHGAP28 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.204 (Fisher's exact test), Q value = 0.51

Table S18894.  Gene #1796: 'ARHGAP28 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ARHGAP28 MUTATED 3 0 4
ARHGAP28 WILD-TYPE 84 80 96
'ARHGAP28 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.506 (Fisher's exact test), Q value = 0.83

Table S18895.  Gene #1796: 'ARHGAP28 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ARHGAP28 MUTATED 2 4 7
ARHGAP28 WILD-TYPE 87 156 131
'ARHGAP28 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.613 (Fisher's exact test), Q value = 0.91

Table S18896.  Gene #1796: 'ARHGAP28 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ARHGAP28 MUTATED 8 3 2
ARHGAP28 WILD-TYPE 174 130 70
'ARHGAP28 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.121 (Fisher's exact test), Q value = 0.39

Table S18897.  Gene #1796: 'ARHGAP28 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ARHGAP28 MUTATED 0 4 3 7
ARHGAP28 WILD-TYPE 112 92 89 179
'ARHGAP28 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 2e-05 (Fisher's exact test), Q value = 0.0017

Table S18898.  Gene #1796: 'ARHGAP28 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ARHGAP28 MUTATED 1 0 7 0 0 0 6
ARHGAP28 WILD-TYPE 59 50 42 40 63 125 93

Figure S4669.  Get High-res Image Gene #1796: 'ARHGAP28 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ARHGAP28 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.435 (Fisher's exact test), Q value = 0.76

Table S18899.  Gene #1796: 'ARHGAP28 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ARHGAP28 MUTATED 4 2 0 8
ARHGAP28 WILD-TYPE 126 76 68 188
'ARHGAP28 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00089 (Fisher's exact test), Q value = 0.023

Table S18900.  Gene #1796: 'ARHGAP28 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ARHGAP28 MUTATED 0 3 1 0 8 0 1 1 0
ARHGAP28 WILD-TYPE 40 59 27 80 61 48 42 27 74

Figure S4670.  Get High-res Image Gene #1796: 'ARHGAP28 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'ARHGAP28 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.025 (Fisher's exact test), Q value = 0.16

Table S18901.  Gene #1796: 'ARHGAP28 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
ARHGAP28 MUTATED 2 0 0 3
ARHGAP28 WILD-TYPE 31 31 27 16

Figure S4671.  Get High-res Image Gene #1796: 'ARHGAP28 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'ARHGAP28 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.577 (Fisher's exact test), Q value = 0.88

Table S18902.  Gene #1796: 'ARHGAP28 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
ARHGAP28 MUTATED 3 0 2 0
ARHGAP28 WILD-TYPE 51 10 22 22
'STK33 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.121 (Fisher's exact test), Q value = 0.39

Table S18903.  Gene #1797: 'STK33 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
STK33 MUTATED 2 0 0 1
STK33 WILD-TYPE 44 58 64 42
'STK33 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.256 (Fisher's exact test), Q value = 0.58

Table S18904.  Gene #1797: 'STK33 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
STK33 MUTATED 2 1 0
STK33 WILD-TYPE 49 82 77
'STK33 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0427 (Fisher's exact test), Q value = 0.22

Table S18905.  Gene #1797: 'STK33 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
STK33 MUTATED 9 1 4 0
STK33 WILD-TYPE 169 182 97 20

Figure S4672.  Get High-res Image Gene #1797: 'STK33 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'STK33 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.522 (Fisher's exact test), Q value = 0.84

Table S18906.  Gene #1797: 'STK33 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
STK33 MUTATED 5 2 6
STK33 WILD-TYPE 82 78 94
'STK33 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.287 (Fisher's exact test), Q value = 0.62

Table S18907.  Gene #1797: 'STK33 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
STK33 MUTATED 1 8 6
STK33 WILD-TYPE 88 152 132
'STK33 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.281 (Fisher's exact test), Q value = 0.61

Table S18908.  Gene #1797: 'STK33 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
STK33 MUTATED 5 5 5
STK33 WILD-TYPE 177 128 67
'STK33 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.282 (Fisher's exact test), Q value = 0.61

Table S18909.  Gene #1797: 'STK33 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
STK33 MUTATED 6 4 3 3
STK33 WILD-TYPE 106 92 89 183
'STK33 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00954 (Fisher's exact test), Q value = 0.092

Table S18910.  Gene #1797: 'STK33 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
STK33 MUTATED 5 4 2 0 2 0 3
STK33 WILD-TYPE 55 46 47 40 61 125 96

Figure S4673.  Get High-res Image Gene #1797: 'STK33 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'STK33 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0734 (Fisher's exact test), Q value = 0.29

Table S18911.  Gene #1797: 'STK33 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
STK33 MUTATED 8 4 1 3
STK33 WILD-TYPE 122 74 67 193
'STK33 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.138 (Fisher's exact test), Q value = 0.41

Table S18912.  Gene #1797: 'STK33 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
STK33 MUTATED 2 3 3 4 2 2 0 0 0
STK33 WILD-TYPE 38 59 25 76 67 46 43 28 74
'STK33 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.166 (Fisher's exact test), Q value = 0.46

Table S18913.  Gene #1797: 'STK33 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
STK33 MUTATED 0 0 2 1
STK33 WILD-TYPE 33 31 25 18
'STK33 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.692 (Fisher's exact test), Q value = 0.97

Table S18914.  Gene #1797: 'STK33 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
STK33 MUTATED 1 0 1 1
STK33 WILD-TYPE 53 10 23 21
'GNG12 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00451 (Fisher's exact test), Q value = 0.061

Table S18915.  Gene #1798: 'GNG12 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
GNG12 MUTATED 8 0 0 0
GNG12 WILD-TYPE 170 183 101 20

Figure S4674.  Get High-res Image Gene #1798: 'GNG12 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'GNG12 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00924 (Fisher's exact test), Q value = 0.09

Table S18916.  Gene #1798: 'GNG12 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
GNG12 MUTATED 1 0 7
GNG12 WILD-TYPE 86 80 93

Figure S4675.  Get High-res Image Gene #1798: 'GNG12 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'GNG12 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.304 (Fisher's exact test), Q value = 0.63

Table S18917.  Gene #1798: 'GNG12 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
GNG12 MUTATED 0 3 4
GNG12 WILD-TYPE 89 157 134
'GNG12 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.683 (Fisher's exact test), Q value = 0.96

Table S18918.  Gene #1798: 'GNG12 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
GNG12 MUTATED 4 3 0
GNG12 WILD-TYPE 178 130 72
'GNG12 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00034 (Fisher's exact test), Q value = 0.012

Table S18919.  Gene #1798: 'GNG12 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
GNG12 MUTATED 0 6 2 0
GNG12 WILD-TYPE 112 90 90 186

Figure S4676.  Get High-res Image Gene #1798: 'GNG12 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'GNG12 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S18920.  Gene #1798: 'GNG12 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
GNG12 MUTATED 0 0 8 0 0 0 0
GNG12 WILD-TYPE 60 50 41 40 63 125 99

Figure S4677.  Get High-res Image Gene #1798: 'GNG12 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'GNG12 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00163 (Fisher's exact test), Q value = 0.033

Table S18921.  Gene #1798: 'GNG12 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
GNG12 MUTATED 7 1 0 0
GNG12 WILD-TYPE 123 77 68 196

Figure S4678.  Get High-res Image Gene #1798: 'GNG12 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'GNG12 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0713 (Fisher's exact test), Q value = 0.29

Table S18922.  Gene #1798: 'GNG12 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
GNG12 MUTATED 1 1 0 0 4 0 2 0 0
GNG12 WILD-TYPE 39 61 28 80 65 48 41 28 74
'GNG12 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0237 (Fisher's exact test), Q value = 0.16

Table S18923.  Gene #1798: 'GNG12 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
GNG12 MUTATED 1 0 0 3
GNG12 WILD-TYPE 32 31 27 16

Figure S4679.  Get High-res Image Gene #1798: 'GNG12 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'GNG12 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.674 (Fisher's exact test), Q value = 0.96

Table S18924.  Gene #1798: 'GNG12 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
GNG12 MUTATED 2 0 2 0
GNG12 WILD-TYPE 52 10 22 22
'FAM70A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0658 (Fisher's exact test), Q value = 0.28

Table S18925.  Gene #1799: 'FAM70A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
FAM70A MUTATED 6 0 2 0
FAM70A WILD-TYPE 172 183 99 20
'FAM70A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.448 (Fisher's exact test), Q value = 0.77

Table S18926.  Gene #1799: 'FAM70A MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
FAM70A MUTATED 2 3 1
FAM70A WILD-TYPE 85 77 99
'FAM70A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.238 (Fisher's exact test), Q value = 0.56

Table S18927.  Gene #1799: 'FAM70A MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
FAM70A MUTATED 0 2 4
FAM70A WILD-TYPE 89 158 134
'FAM70A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.581 (Fisher's exact test), Q value = 0.89

Table S18928.  Gene #1799: 'FAM70A MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
FAM70A MUTATED 3 3 0
FAM70A WILD-TYPE 179 130 72
'FAM70A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.717 (Fisher's exact test), Q value = 0.99

Table S18929.  Gene #1799: 'FAM70A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
FAM70A MUTATED 3 2 1 2
FAM70A WILD-TYPE 109 94 91 184
'FAM70A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.238 (Fisher's exact test), Q value = 0.56

Table S18930.  Gene #1799: 'FAM70A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
FAM70A MUTATED 2 2 1 0 1 0 2
FAM70A WILD-TYPE 58 48 48 40 62 125 97
'FAM70A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.864 (Fisher's exact test), Q value = 1

Table S18931.  Gene #1799: 'FAM70A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
FAM70A MUTATED 3 1 1 2
FAM70A WILD-TYPE 127 77 67 194
'FAM70A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.3 (Fisher's exact test), Q value = 0.63

Table S18932.  Gene #1799: 'FAM70A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
FAM70A MUTATED 1 1 2 0 1 0 1 0 1
FAM70A WILD-TYPE 39 61 26 80 68 48 42 28 73
'ACPP MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0316 (Fisher's exact test), Q value = 0.18

Table S18933.  Gene #1800: 'ACPP MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ACPP MUTATED 3 0 0 1
ACPP WILD-TYPE 43 58 64 42

Figure S4680.  Get High-res Image Gene #1800: 'ACPP MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'ACPP MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.557 (Fisher's exact test), Q value = 0.87

Table S18934.  Gene #1800: 'ACPP MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ACPP MUTATED 2 1 1
ACPP WILD-TYPE 49 82 76
'ACPP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.12 (Fisher's exact test), Q value = 0.39

Table S18935.  Gene #1800: 'ACPP MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ACPP MUTATED 4 0 0 0
ACPP WILD-TYPE 174 183 101 20
'ACPP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.183 (Fisher's exact test), Q value = 0.48

Table S18936.  Gene #1800: 'ACPP MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ACPP MUTATED 0 0 0 4
ACPP WILD-TYPE 112 96 92 182
'ACPP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.823 (Fisher's exact test), Q value = 1

Table S18937.  Gene #1800: 'ACPP MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ACPP MUTATED 1 0 0 0 0 1 2
ACPP WILD-TYPE 59 50 49 40 63 124 97
'ACPP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.391 (Fisher's exact test), Q value = 0.72

Table S18938.  Gene #1800: 'ACPP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ACPP MUTATED 0 0 0 3
ACPP WILD-TYPE 130 78 68 193
'ACPP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.669 (Fisher's exact test), Q value = 0.95

Table S18939.  Gene #1800: 'ACPP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ACPP MUTATED 0 0 0 1 2 0 0 0 0
ACPP WILD-TYPE 40 62 28 79 67 48 43 28 74
'RUNDC2A MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.154 (Fisher's exact test), Q value = 0.44

Table S18940.  Gene #1801: 'RUNDC2A MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
RUNDC2A MUTATED 0 1 0 2
RUNDC2A WILD-TYPE 46 57 64 41
'RUNDC2A MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.351 (Fisher's exact test), Q value = 0.68

Table S18941.  Gene #1801: 'RUNDC2A MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
RUNDC2A MUTATED 1 0 2
RUNDC2A WILD-TYPE 50 83 75
'RUNDC2A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.104 (Fisher's exact test), Q value = 0.36

Table S18942.  Gene #1801: 'RUNDC2A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
RUNDC2A MUTATED 6 1 0 0
RUNDC2A WILD-TYPE 172 182 101 20
'RUNDC2A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.204 (Fisher's exact test), Q value = 0.51

Table S18943.  Gene #1801: 'RUNDC2A MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
RUNDC2A MUTATED 3 0 1
RUNDC2A WILD-TYPE 84 80 99
'RUNDC2A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.616 (Fisher's exact test), Q value = 0.92

Table S18944.  Gene #1801: 'RUNDC2A MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
RUNDC2A MUTATED 1 2 4
RUNDC2A WILD-TYPE 88 158 134
'RUNDC2A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.885 (Fisher's exact test), Q value = 1

Table S18945.  Gene #1801: 'RUNDC2A MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
RUNDC2A MUTATED 3 3 1
RUNDC2A WILD-TYPE 179 130 71
'RUNDC2A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.473 (Fisher's exact test), Q value = 0.8

Table S18946.  Gene #1801: 'RUNDC2A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
RUNDC2A MUTATED 0 2 1 4
RUNDC2A WILD-TYPE 112 94 91 182
'RUNDC2A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.554 (Fisher's exact test), Q value = 0.87

Table S18947.  Gene #1801: 'RUNDC2A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
RUNDC2A MUTATED 1 2 1 0 0 1 2
RUNDC2A WILD-TYPE 59 48 48 40 63 124 97
'RUNDC2A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.931 (Fisher's exact test), Q value = 1

Table S18948.  Gene #1801: 'RUNDC2A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
RUNDC2A MUTATED 1 1 0 3
RUNDC2A WILD-TYPE 129 77 68 193
'RUNDC2A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.794 (Fisher's exact test), Q value = 1

Table S18949.  Gene #1801: 'RUNDC2A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
RUNDC2A MUTATED 1 1 0 0 1 0 0 0 2
RUNDC2A WILD-TYPE 39 61 28 80 68 48 43 28 72
'IMMT MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00838 (Fisher's exact test), Q value = 0.085

Table S18950.  Gene #1802: 'IMMT MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
IMMT MUTATED 3 0 0 3
IMMT WILD-TYPE 43 58 64 40

Figure S4681.  Get High-res Image Gene #1802: 'IMMT MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'IMMT MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.244 (Fisher's exact test), Q value = 0.57

Table S18951.  Gene #1802: 'IMMT MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
IMMT MUTATED 3 1 2
IMMT WILD-TYPE 48 82 75
'IMMT MUTATION STATUS' versus 'CN_CNMF'

P value = 0.333 (Fisher's exact test), Q value = 0.66

Table S18952.  Gene #1802: 'IMMT MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
IMMT MUTATED 5 1 2 0
IMMT WILD-TYPE 173 182 99 20
'IMMT MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.374 (Fisher's exact test), Q value = 0.7

Table S18953.  Gene #1802: 'IMMT MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
IMMT MUTATED 0 2 3
IMMT WILD-TYPE 89 158 135
'IMMT MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.719 (Fisher's exact test), Q value = 0.99

Table S18954.  Gene #1802: 'IMMT MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
IMMT MUTATED 3 2 0
IMMT WILD-TYPE 179 131 72
'IMMT MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0412 (Fisher's exact test), Q value = 0.21

Table S18955.  Gene #1802: 'IMMT MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
IMMT MUTATED 0 0 1 7
IMMT WILD-TYPE 112 96 91 179

Figure S4682.  Get High-res Image Gene #1802: 'IMMT MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'IMMT MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.195 (Fisher's exact test), Q value = 0.5

Table S18956.  Gene #1802: 'IMMT MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
IMMT MUTATED 1 0 1 0 0 1 5
IMMT WILD-TYPE 59 50 48 40 63 124 94
'IMMT MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.111 (Fisher's exact test), Q value = 0.37

Table S18957.  Gene #1802: 'IMMT MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
IMMT MUTATED 1 0 0 7
IMMT WILD-TYPE 129 78 68 189
'IMMT MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00683 (Fisher's exact test), Q value = 0.076

Table S18958.  Gene #1802: 'IMMT MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
IMMT MUTATED 0 0 2 1 5 0 0 0 0
IMMT WILD-TYPE 40 62 26 79 64 48 43 28 74

Figure S4683.  Get High-res Image Gene #1802: 'IMMT MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'COLEC12 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0983 (Fisher's exact test), Q value = 0.34

Table S18959.  Gene #1803: 'COLEC12 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
COLEC12 MUTATED 4 0 2 2
COLEC12 WILD-TYPE 42 58 62 41
'COLEC12 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.308 (Fisher's exact test), Q value = 0.64

Table S18960.  Gene #1803: 'COLEC12 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
COLEC12 MUTATED 4 2 2
COLEC12 WILD-TYPE 47 81 75
'COLEC12 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00267 (Fisher's exact test), Q value = 0.045

Table S18961.  Gene #1803: 'COLEC12 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
COLEC12 MUTATED 15 2 2 0
COLEC12 WILD-TYPE 163 181 99 20

Figure S4684.  Get High-res Image Gene #1803: 'COLEC12 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'COLEC12 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.617 (Fisher's exact test), Q value = 0.92

Table S18962.  Gene #1803: 'COLEC12 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
COLEC12 MUTATED 5 2 5
COLEC12 WILD-TYPE 82 78 95
'COLEC12 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.018 (Fisher's exact test), Q value = 0.13

Table S18963.  Gene #1803: 'COLEC12 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
COLEC12 MUTATED 0 4 9
COLEC12 WILD-TYPE 89 156 129

Figure S4685.  Get High-res Image Gene #1803: 'COLEC12 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'COLEC12 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.933 (Fisher's exact test), Q value = 1

Table S18964.  Gene #1803: 'COLEC12 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
COLEC12 MUTATED 7 4 2
COLEC12 WILD-TYPE 175 129 70
'COLEC12 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.413 (Fisher's exact test), Q value = 0.74

Table S18965.  Gene #1803: 'COLEC12 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
COLEC12 MUTATED 2 6 3 8
COLEC12 WILD-TYPE 110 90 89 178
'COLEC12 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.016 (Fisher's exact test), Q value = 0.13

Table S18966.  Gene #1803: 'COLEC12 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
COLEC12 MUTATED 2 2 7 0 1 2 5
COLEC12 WILD-TYPE 58 48 42 40 62 123 94

Figure S4686.  Get High-res Image Gene #1803: 'COLEC12 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'COLEC12 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.808 (Fisher's exact test), Q value = 1

Table S18967.  Gene #1803: 'COLEC12 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
COLEC12 MUTATED 7 2 2 8
COLEC12 WILD-TYPE 123 76 66 188
'COLEC12 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.302 (Fisher's exact test), Q value = 0.63

Table S18968.  Gene #1803: 'COLEC12 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
COLEC12 MUTATED 0 4 1 2 7 1 1 1 2
COLEC12 WILD-TYPE 40 58 27 78 62 47 42 27 72
'SCYL2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.373 (Fisher's exact test), Q value = 0.7

Table S18969.  Gene #1804: 'SCYL2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
SCYL2 MUTATED 2 1 0 1
SCYL2 WILD-TYPE 44 57 64 42
'SCYL2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S18970.  Gene #1804: 'SCYL2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
SCYL2 MUTATED 1 2 1
SCYL2 WILD-TYPE 50 81 76
'SCYL2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.143 (Fisher's exact test), Q value = 0.42

Table S18971.  Gene #1804: 'SCYL2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
SCYL2 MUTATED 12 4 3 1
SCYL2 WILD-TYPE 166 179 98 19
'SCYL2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.616 (Fisher's exact test), Q value = 0.91

Table S18972.  Gene #1804: 'SCYL2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
SCYL2 MUTATED 4 4 8
SCYL2 WILD-TYPE 83 76 92
'SCYL2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.904 (Fisher's exact test), Q value = 1

Table S18973.  Gene #1804: 'SCYL2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
SCYL2 MUTATED 3 7 7
SCYL2 WILD-TYPE 86 153 131
'SCYL2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.346 (Fisher's exact test), Q value = 0.67

Table S18974.  Gene #1804: 'SCYL2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
SCYL2 MUTATED 8 8 1
SCYL2 WILD-TYPE 174 125 71
'SCYL2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.117 (Fisher's exact test), Q value = 0.38

Table S18975.  Gene #1804: 'SCYL2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
SCYL2 MUTATED 5 8 4 4
SCYL2 WILD-TYPE 107 88 88 182
'SCYL2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00048 (Fisher's exact test), Q value = 0.015

Table S18976.  Gene #1804: 'SCYL2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
SCYL2 MUTATED 7 2 7 1 1 2 1
SCYL2 WILD-TYPE 53 48 42 39 62 123 98

Figure S4687.  Get High-res Image Gene #1804: 'SCYL2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'SCYL2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.474 (Fisher's exact test), Q value = 0.8

Table S18977.  Gene #1804: 'SCYL2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
SCYL2 MUTATED 9 2 2 8
SCYL2 WILD-TYPE 121 76 66 188
'SCYL2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.368 (Fisher's exact test), Q value = 0.7

Table S18978.  Gene #1804: 'SCYL2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
SCYL2 MUTATED 4 3 0 2 6 2 2 0 2
SCYL2 WILD-TYPE 36 59 28 78 63 46 41 28 72
'SCYL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.193 (Fisher's exact test), Q value = 0.5

Table S18979.  Gene #1804: 'SCYL2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
SCYL2 MUTATED 0 1 1 2
SCYL2 WILD-TYPE 33 30 26 17
'SCYL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.868 (Fisher's exact test), Q value = 1

Table S18980.  Gene #1804: 'SCYL2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
SCYL2 MUTATED 3 0 1 0
SCYL2 WILD-TYPE 51 10 23 22
'CAPRIN2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.036 (Fisher's exact test), Q value = 0.2

Table S18981.  Gene #1805: 'CAPRIN2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
CAPRIN2 MUTATED 3 0 1 4
CAPRIN2 WILD-TYPE 43 58 63 39

Figure S4688.  Get High-res Image Gene #1805: 'CAPRIN2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'CAPRIN2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.309 (Fisher's exact test), Q value = 0.64

Table S18982.  Gene #1805: 'CAPRIN2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
CAPRIN2 MUTATED 4 2 2
CAPRIN2 WILD-TYPE 47 81 75
'CAPRIN2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0155 (Fisher's exact test), Q value = 0.12

Table S18983.  Gene #1805: 'CAPRIN2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
CAPRIN2 MUTATED 13 3 1 0
CAPRIN2 WILD-TYPE 165 180 100 20

Figure S4689.  Get High-res Image Gene #1805: 'CAPRIN2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'CAPRIN2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.4 (Fisher's exact test), Q value = 0.73

Table S18984.  Gene #1805: 'CAPRIN2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
CAPRIN2 MUTATED 5 2 2
CAPRIN2 WILD-TYPE 82 78 98
'CAPRIN2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00426 (Fisher's exact test), Q value = 0.06

Table S18985.  Gene #1805: 'CAPRIN2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
CAPRIN2 MUTATED 0 4 11
CAPRIN2 WILD-TYPE 89 156 127

Figure S4690.  Get High-res Image Gene #1805: 'CAPRIN2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'CAPRIN2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.301 (Fisher's exact test), Q value = 0.63

Table S18986.  Gene #1805: 'CAPRIN2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
CAPRIN2 MUTATED 10 4 1
CAPRIN2 WILD-TYPE 172 129 71
'CAPRIN2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.256 (Fisher's exact test), Q value = 0.58

Table S18987.  Gene #1805: 'CAPRIN2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
CAPRIN2 MUTATED 1 3 5 8
CAPRIN2 WILD-TYPE 111 93 87 178
'CAPRIN2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0448 (Fisher's exact test), Q value = 0.23

Table S18988.  Gene #1805: 'CAPRIN2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
CAPRIN2 MUTATED 2 1 5 0 2 1 6
CAPRIN2 WILD-TYPE 58 49 44 40 61 124 93

Figure S4691.  Get High-res Image Gene #1805: 'CAPRIN2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CAPRIN2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.575 (Fisher's exact test), Q value = 0.88

Table S18989.  Gene #1805: 'CAPRIN2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
CAPRIN2 MUTATED 3 4 1 8
CAPRIN2 WILD-TYPE 127 74 67 188
'CAPRIN2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.28 (Fisher's exact test), Q value = 0.61

Table S18990.  Gene #1805: 'CAPRIN2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
CAPRIN2 MUTATED 0 5 1 2 5 1 1 0 1
CAPRIN2 WILD-TYPE 40 57 27 78 64 47 42 28 73
'CAPRIN2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.27 (Fisher's exact test), Q value = 0.6

Table S18991.  Gene #1805: 'CAPRIN2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
CAPRIN2 MUTATED 1 0 1 2
CAPRIN2 WILD-TYPE 32 31 26 17
'CAPRIN2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.375 (Fisher's exact test), Q value = 0.7

Table S18992.  Gene #1805: 'CAPRIN2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
CAPRIN2 MUTATED 2 1 0 1
CAPRIN2 WILD-TYPE 52 9 24 21
'CNOT10 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0174 (Fisher's exact test), Q value = 0.13

Table S18993.  Gene #1806: 'CNOT10 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
CNOT10 MUTATED 8 0 2 0
CNOT10 WILD-TYPE 170 183 99 20

Figure S4692.  Get High-res Image Gene #1806: 'CNOT10 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'CNOT10 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.141 (Fisher's exact test), Q value = 0.42

Table S18994.  Gene #1806: 'CNOT10 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
CNOT10 MUTATED 5 1 1
CNOT10 WILD-TYPE 82 79 99
'CNOT10 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0322 (Fisher's exact test), Q value = 0.18

Table S18995.  Gene #1806: 'CNOT10 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
CNOT10 MUTATED 0 2 7
CNOT10 WILD-TYPE 89 158 131

Figure S4693.  Get High-res Image Gene #1806: 'CNOT10 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'CNOT10 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.364 (Fisher's exact test), Q value = 0.69

Table S18996.  Gene #1806: 'CNOT10 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
CNOT10 MUTATED 6 3 0
CNOT10 WILD-TYPE 176 130 72
'CNOT10 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.518 (Fisher's exact test), Q value = 0.84

Table S18997.  Gene #1806: 'CNOT10 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
CNOT10 MUTATED 1 3 3 3
CNOT10 WILD-TYPE 111 93 89 183
'CNOT10 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.145 (Fisher's exact test), Q value = 0.42

Table S18998.  Gene #1806: 'CNOT10 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
CNOT10 MUTATED 1 1 3 1 1 0 3
CNOT10 WILD-TYPE 59 49 46 39 62 125 96
'CNOT10 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.778 (Fisher's exact test), Q value = 1

Table S18999.  Gene #1806: 'CNOT10 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
CNOT10 MUTATED 2 2 2 3
CNOT10 WILD-TYPE 128 76 66 193
'CNOT10 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.383 (Fisher's exact test), Q value = 0.71

Table S19000.  Gene #1806: 'CNOT10 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
CNOT10 MUTATED 0 2 1 1 1 0 3 0 1
CNOT10 WILD-TYPE 40 60 27 79 68 48 40 28 73
'CNOT10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.782 (Fisher's exact test), Q value = 1

Table S19001.  Gene #1806: 'CNOT10 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
CNOT10 MUTATED 1 0 1 1
CNOT10 WILD-TYPE 32 31 26 18
'CNOT10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S19002.  Gene #1806: 'CNOT10 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
CNOT10 MUTATED 2 0 1 0
CNOT10 WILD-TYPE 52 10 23 22
'LUZP1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.131 (Fisher's exact test), Q value = 0.4

Table S19003.  Gene #1807: 'LUZP1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
LUZP1 MUTATED 1 0 1 3
LUZP1 WILD-TYPE 45 58 63 40
'LUZP1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.636 (Fisher's exact test), Q value = 0.93

Table S19004.  Gene #1807: 'LUZP1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
LUZP1 MUTATED 1 1 3
LUZP1 WILD-TYPE 50 82 74
'LUZP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00066 (Fisher's exact test), Q value = 0.019

Table S19005.  Gene #1807: 'LUZP1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
LUZP1 MUTATED 14 1 1 0
LUZP1 WILD-TYPE 164 182 100 20

Figure S4694.  Get High-res Image Gene #1807: 'LUZP1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'LUZP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0659 (Fisher's exact test), Q value = 0.28

Table S19006.  Gene #1807: 'LUZP1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
LUZP1 MUTATED 4 0 6
LUZP1 WILD-TYPE 83 80 94
'LUZP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.761 (Fisher's exact test), Q value = 1

Table S19007.  Gene #1807: 'LUZP1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
LUZP1 MUTATED 5 6 5
LUZP1 WILD-TYPE 84 154 133
'LUZP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.209 (Fisher's exact test), Q value = 0.52

Table S19008.  Gene #1807: 'LUZP1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
LUZP1 MUTATED 5 9 2
LUZP1 WILD-TYPE 177 124 70
'LUZP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0875 (Fisher's exact test), Q value = 0.32

Table S19009.  Gene #1807: 'LUZP1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
LUZP1 MUTATED 1 7 3 5
LUZP1 WILD-TYPE 111 89 89 181
'LUZP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00276 (Fisher's exact test), Q value = 0.046

Table S19010.  Gene #1807: 'LUZP1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
LUZP1 MUTATED 1 3 6 0 0 1 5
LUZP1 WILD-TYPE 59 47 43 40 63 124 94

Figure S4695.  Get High-res Image Gene #1807: 'LUZP1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'LUZP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.73 (Fisher's exact test), Q value = 1

Table S19011.  Gene #1807: 'LUZP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
LUZP1 MUTATED 4 2 1 9
LUZP1 WILD-TYPE 126 76 67 187
'LUZP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.851 (Fisher's exact test), Q value = 1

Table S19012.  Gene #1807: 'LUZP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
LUZP1 MUTATED 1 2 2 1 2 2 1 1 4
LUZP1 WILD-TYPE 39 60 26 79 67 46 42 27 70
'LUZP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.136 (Fisher's exact test), Q value = 0.41

Table S19013.  Gene #1807: 'LUZP1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
LUZP1 MUTATED 1 0 0 2
LUZP1 WILD-TYPE 32 31 27 17
'LUZP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S19014.  Gene #1807: 'LUZP1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
LUZP1 MUTATED 2 0 1 0
LUZP1 WILD-TYPE 52 10 23 22
'VCX3A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.295 (Fisher's exact test), Q value = 0.62

Table S19015.  Gene #1808: 'VCX3A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
VCX3A MUTATED 1 1 3 0
VCX3A WILD-TYPE 177 182 98 20
'VCX3A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.233 (Fisher's exact test), Q value = 0.55

Table S19016.  Gene #1808: 'VCX3A MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
VCX3A MUTATED 0 3 2
VCX3A WILD-TYPE 87 77 98
'VCX3A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.112 (Fisher's exact test), Q value = 0.37

Table S19017.  Gene #1808: 'VCX3A MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
VCX3A MUTATED 2 0 1
VCX3A WILD-TYPE 87 160 137
'VCX3A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.302 (Fisher's exact test), Q value = 0.63

Table S19018.  Gene #1808: 'VCX3A MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
VCX3A MUTATED 3 0 0
VCX3A WILD-TYPE 179 133 72
'VCX3A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.491 (Fisher's exact test), Q value = 0.82

Table S19019.  Gene #1808: 'VCX3A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
VCX3A MUTATED 0 2 1 2
VCX3A WILD-TYPE 112 94 91 184
'VCX3A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.33 (Fisher's exact test), Q value = 0.66

Table S19020.  Gene #1808: 'VCX3A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
VCX3A MUTATED 0 2 0 0 1 2 0
VCX3A WILD-TYPE 60 48 49 40 62 123 99
'VCX3A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.351 (Fisher's exact test), Q value = 0.68

Table S19021.  Gene #1808: 'VCX3A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
VCX3A MUTATED 2 2 0 1
VCX3A WILD-TYPE 128 76 68 195
'VCX3A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.72 (Fisher's exact test), Q value = 0.99

Table S19022.  Gene #1808: 'VCX3A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
VCX3A MUTATED 1 1 0 1 0 0 0 1 1
VCX3A WILD-TYPE 39 61 28 79 69 48 43 27 73
'BAP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0166 (Fisher's exact test), Q value = 0.13

Table S19023.  Gene #1809: 'BAP1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
BAP1 MUTATED 9 2 1 2
BAP1 WILD-TYPE 169 181 100 18

Figure S4696.  Get High-res Image Gene #1809: 'BAP1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'BAP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0468 (Fisher's exact test), Q value = 0.23

Table S19024.  Gene #1809: 'BAP1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
BAP1 MUTATED 8 1 3
BAP1 WILD-TYPE 79 79 97

Figure S4697.  Get High-res Image Gene #1809: 'BAP1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'BAP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.421 (Fisher's exact test), Q value = 0.75

Table S19025.  Gene #1809: 'BAP1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
BAP1 MUTATED 1 5 6
BAP1 WILD-TYPE 88 155 132
'BAP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.638 (Fisher's exact test), Q value = 0.93

Table S19026.  Gene #1809: 'BAP1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
BAP1 MUTATED 7 4 1
BAP1 WILD-TYPE 175 129 71
'BAP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.066 (Fisher's exact test), Q value = 0.28

Table S19027.  Gene #1809: 'BAP1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
BAP1 MUTATED 2 5 5 2
BAP1 WILD-TYPE 110 91 87 184
'BAP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00324 (Fisher's exact test), Q value = 0.051

Table S19028.  Gene #1809: 'BAP1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
BAP1 MUTATED 2 2 6 1 1 0 2
BAP1 WILD-TYPE 58 48 43 39 62 125 97

Figure S4698.  Get High-res Image Gene #1809: 'BAP1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'BAP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.368 (Fisher's exact test), Q value = 0.7

Table S19029.  Gene #1809: 'BAP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
BAP1 MUTATED 7 2 1 4
BAP1 WILD-TYPE 123 76 67 192
'BAP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.502 (Fisher's exact test), Q value = 0.83

Table S19030.  Gene #1809: 'BAP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
BAP1 MUTATED 2 2 2 3 3 1 1 0 0
BAP1 WILD-TYPE 38 60 26 77 66 47 42 28 74
'BAP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.303 (Fisher's exact test), Q value = 0.63

Table S19031.  Gene #1809: 'BAP1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
BAP1 MUTATED 2 0 1 2
BAP1 WILD-TYPE 31 31 26 17
'BAP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.821 (Fisher's exact test), Q value = 1

Table S19032.  Gene #1809: 'BAP1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
BAP1 MUTATED 2 0 1 2
BAP1 WILD-TYPE 52 10 23 20
'CDHR5 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.179 (Fisher's exact test), Q value = 0.48

Table S19033.  Gene #1810: 'CDHR5 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
CDHR5 MUTATED 3 0 1 1
CDHR5 WILD-TYPE 43 58 63 42
'CDHR5 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.019 (Fisher's exact test), Q value = 0.14

Table S19034.  Gene #1810: 'CDHR5 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
CDHR5 MUTATED 4 1 0
CDHR5 WILD-TYPE 47 82 77

Figure S4699.  Get High-res Image Gene #1810: 'CDHR5 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'CDHR5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0281 (Fisher's exact test), Q value = 0.17

Table S19035.  Gene #1810: 'CDHR5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
CDHR5 MUTATED 9 2 0 0
CDHR5 WILD-TYPE 169 181 101 20

Figure S4700.  Get High-res Image Gene #1810: 'CDHR5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'CDHR5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.382 (Fisher's exact test), Q value = 0.71

Table S19036.  Gene #1810: 'CDHR5 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
CDHR5 MUTATED 1 1 4
CDHR5 WILD-TYPE 86 79 96
'CDHR5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.428 (Fisher's exact test), Q value = 0.75

Table S19037.  Gene #1810: 'CDHR5 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
CDHR5 MUTATED 2 3 6
CDHR5 WILD-TYPE 87 157 132
'CDHR5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.135 (Fisher's exact test), Q value = 0.41

Table S19038.  Gene #1810: 'CDHR5 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
CDHR5 MUTATED 8 1 2
CDHR5 WILD-TYPE 174 132 70
'CDHR5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.234 (Fisher's exact test), Q value = 0.55

Table S19039.  Gene #1810: 'CDHR5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
CDHR5 MUTATED 1 5 1 5
CDHR5 WILD-TYPE 111 91 91 181
'CDHR5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0421 (Fisher's exact test), Q value = 0.22

Table S19040.  Gene #1810: 'CDHR5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
CDHR5 MUTATED 1 1 4 0 0 1 5
CDHR5 WILD-TYPE 59 49 45 40 63 124 94

Figure S4701.  Get High-res Image Gene #1810: 'CDHR5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CDHR5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.926 (Fisher's exact test), Q value = 1

Table S19041.  Gene #1810: 'CDHR5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
CDHR5 MUTATED 3 1 2 6
CDHR5 WILD-TYPE 127 77 66 190
'CDHR5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.255 (Fisher's exact test), Q value = 0.58

Table S19042.  Gene #1810: 'CDHR5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
CDHR5 MUTATED 1 1 1 0 5 1 1 1 1
CDHR5 WILD-TYPE 39 61 27 80 64 47 42 27 73
'CDHR5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.254 (Fisher's exact test), Q value = 0.58

Table S19043.  Gene #1810: 'CDHR5 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
CDHR5 MUTATED 2 0 0 1
CDHR5 WILD-TYPE 31 31 27 18
'CDHR5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.696 (Fisher's exact test), Q value = 0.97

Table S19044.  Gene #1810: 'CDHR5 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
CDHR5 MUTATED 1 0 1 1
CDHR5 WILD-TYPE 53 10 23 21
'SLCO1B3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.167 (Fisher's exact test), Q value = 0.46

Table S19045.  Gene #1811: 'SLCO1B3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
SLCO1B3 MUTATED 3 0 3 3
SLCO1B3 WILD-TYPE 43 58 61 40
'SLCO1B3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.377 (Fisher's exact test), Q value = 0.71

Table S19046.  Gene #1811: 'SLCO1B3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
SLCO1B3 MUTATED 4 3 2
SLCO1B3 WILD-TYPE 47 80 75
'SLCO1B3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.579 (Fisher's exact test), Q value = 0.88

Table S19047.  Gene #1811: 'SLCO1B3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
SLCO1B3 MUTATED 9 5 4 1
SLCO1B3 WILD-TYPE 169 178 97 19
'SLCO1B3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S19048.  Gene #1811: 'SLCO1B3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
SLCO1B3 MUTATED 3 3 4
SLCO1B3 WILD-TYPE 84 77 96
'SLCO1B3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.46 (Fisher's exact test), Q value = 0.79

Table S19049.  Gene #1811: 'SLCO1B3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
SLCO1B3 MUTATED 2 9 5
SLCO1B3 WILD-TYPE 87 151 133
'SLCO1B3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.498 (Fisher's exact test), Q value = 0.82

Table S19050.  Gene #1811: 'SLCO1B3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
SLCO1B3 MUTATED 6 8 2
SLCO1B3 WILD-TYPE 176 125 70
'SLCO1B3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.268 (Fisher's exact test), Q value = 0.59

Table S19051.  Gene #1811: 'SLCO1B3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
SLCO1B3 MUTATED 2 2 4 11
SLCO1B3 WILD-TYPE 110 94 88 175
'SLCO1B3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.475 (Fisher's exact test), Q value = 0.8

Table S19052.  Gene #1811: 'SLCO1B3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
SLCO1B3 MUTATED 1 1 3 0 4 4 6
SLCO1B3 WILD-TYPE 59 49 46 40 59 121 93
'SLCO1B3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.67 (Fisher's exact test), Q value = 0.95

Table S19053.  Gene #1811: 'SLCO1B3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
SLCO1B3 MUTATED 3 3 2 10
SLCO1B3 WILD-TYPE 127 75 66 186
'SLCO1B3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.803 (Fisher's exact test), Q value = 1

Table S19054.  Gene #1811: 'SLCO1B3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
SLCO1B3 MUTATED 1 4 1 2 5 1 1 0 3
SLCO1B3 WILD-TYPE 39 58 27 78 64 47 42 28 71
'SLCO1B3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.416 (Fisher's exact test), Q value = 0.74

Table S19055.  Gene #1811: 'SLCO1B3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
SLCO1B3 MUTATED 1 3 0 1
SLCO1B3 WILD-TYPE 32 28 27 18
'SLCO1B3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.524 (Fisher's exact test), Q value = 0.84

Table S19056.  Gene #1811: 'SLCO1B3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
SLCO1B3 MUTATED 3 1 1 0
SLCO1B3 WILD-TYPE 51 9 23 22
'TRAF3IP3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00702 (Fisher's exact test), Q value = 0.077

Table S19057.  Gene #1812: 'TRAF3IP3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
TRAF3IP3 MUTATED 4 0 0 2
TRAF3IP3 WILD-TYPE 42 58 64 41

Figure S4702.  Get High-res Image Gene #1812: 'TRAF3IP3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'TRAF3IP3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0727 (Fisher's exact test), Q value = 0.29

Table S19058.  Gene #1812: 'TRAF3IP3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
TRAF3IP3 MUTATED 4 1 1
TRAF3IP3 WILD-TYPE 47 82 76
'TRAF3IP3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0327 (Fisher's exact test), Q value = 0.18

Table S19059.  Gene #1812: 'TRAF3IP3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
TRAF3IP3 MUTATED 9 3 0 1
TRAF3IP3 WILD-TYPE 169 180 101 19

Figure S4703.  Get High-res Image Gene #1812: 'TRAF3IP3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'TRAF3IP3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.711 (Fisher's exact test), Q value = 0.98

Table S19060.  Gene #1812: 'TRAF3IP3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
TRAF3IP3 MUTATED 3 1 3
TRAF3IP3 WILD-TYPE 84 79 97
'TRAF3IP3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0826 (Fisher's exact test), Q value = 0.31

Table S19061.  Gene #1812: 'TRAF3IP3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
TRAF3IP3 MUTATED 0 5 7
TRAF3IP3 WILD-TYPE 89 155 131
'TRAF3IP3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.637 (Fisher's exact test), Q value = 0.93

Table S19062.  Gene #1812: 'TRAF3IP3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
TRAF3IP3 MUTATED 7 4 1
TRAF3IP3 WILD-TYPE 175 129 71
'TRAF3IP3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.731 (Fisher's exact test), Q value = 1

Table S19063.  Gene #1812: 'TRAF3IP3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
TRAF3IP3 MUTATED 2 2 4 5
TRAF3IP3 WILD-TYPE 110 94 88 181
'TRAF3IP3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.242 (Fisher's exact test), Q value = 0.57

Table S19064.  Gene #1812: 'TRAF3IP3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
TRAF3IP3 MUTATED 3 1 3 0 1 1 4
TRAF3IP3 WILD-TYPE 57 49 46 40 62 124 95
'TRAF3IP3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.49 (Fisher's exact test), Q value = 0.82

Table S19065.  Gene #1812: 'TRAF3IP3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
TRAF3IP3 MUTATED 4 3 0 6
TRAF3IP3 WILD-TYPE 126 75 68 190
'TRAF3IP3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.173 (Fisher's exact test), Q value = 0.47

Table S19066.  Gene #1812: 'TRAF3IP3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
TRAF3IP3 MUTATED 1 3 1 1 5 1 0 1 0
TRAF3IP3 WILD-TYPE 39 59 27 79 64 47 43 27 74
'TRAF3IP3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.136 (Fisher's exact test), Q value = 0.41

Table S19067.  Gene #1812: 'TRAF3IP3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
TRAF3IP3 MUTATED 1 0 0 2
TRAF3IP3 WILD-TYPE 32 31 27 17
'TRAF3IP3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.841 (Fisher's exact test), Q value = 1

Table S19068.  Gene #1812: 'TRAF3IP3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
TRAF3IP3 MUTATED 2 0 0 1
TRAF3IP3 WILD-TYPE 52 10 24 21
'RXRA MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00441 (Fisher's exact test), Q value = 0.061

Table S19069.  Gene #1813: 'RXRA MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
RXRA MUTATED 8 0 0 0
RXRA WILD-TYPE 170 183 101 20

Figure S4704.  Get High-res Image Gene #1813: 'RXRA MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'RXRA MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.178 (Fisher's exact test), Q value = 0.48

Table S19070.  Gene #1813: 'RXRA MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
RXRA MUTATED 4 0 3
RXRA WILD-TYPE 83 80 97
'RXRA MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.164 (Fisher's exact test), Q value = 0.46

Table S19071.  Gene #1813: 'RXRA MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
RXRA MUTATED 1 1 5
RXRA WILD-TYPE 88 159 133
'RXRA MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S19072.  Gene #1813: 'RXRA MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
RXRA MUTATED 4 2 1
RXRA WILD-TYPE 178 131 71
'RXRA MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00273 (Fisher's exact test), Q value = 0.046

Table S19073.  Gene #1813: 'RXRA MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
RXRA MUTATED 0 6 1 1
RXRA WILD-TYPE 112 90 91 185

Figure S4705.  Get High-res Image Gene #1813: 'RXRA MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'RXRA MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 3e-05 (Fisher's exact test), Q value = 0.0022

Table S19074.  Gene #1813: 'RXRA MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
RXRA MUTATED 0 1 6 0 0 0 1
RXRA WILD-TYPE 60 49 43 40 63 125 98

Figure S4706.  Get High-res Image Gene #1813: 'RXRA MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'RXRA MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.492 (Fisher's exact test), Q value = 0.82

Table S19075.  Gene #1813: 'RXRA MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
RXRA MUTATED 4 1 0 3
RXRA WILD-TYPE 126 77 68 193
'RXRA MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0562 (Fisher's exact test), Q value = 0.26

Table S19076.  Gene #1813: 'RXRA MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
RXRA MUTATED 0 2 0 0 5 0 0 0 1
RXRA WILD-TYPE 40 60 28 80 64 48 43 28 73
'DOPEY2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00162 (Fisher's exact test), Q value = 0.033

Table S19077.  Gene #1814: 'DOPEY2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
DOPEY2 MUTATED 0 0 0 4
DOPEY2 WILD-TYPE 46 58 64 39

Figure S4707.  Get High-res Image Gene #1814: 'DOPEY2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'DOPEY2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0397 (Fisher's exact test), Q value = 0.21

Table S19078.  Gene #1814: 'DOPEY2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
DOPEY2 MUTATED 3 0 1
DOPEY2 WILD-TYPE 48 83 76

Figure S4708.  Get High-res Image Gene #1814: 'DOPEY2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'DOPEY2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00015 (Fisher's exact test), Q value = 0.0069

Table S19079.  Gene #1814: 'DOPEY2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
DOPEY2 MUTATED 14 0 2 0
DOPEY2 WILD-TYPE 164 183 99 20

Figure S4709.  Get High-res Image Gene #1814: 'DOPEY2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'DOPEY2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0379 (Fisher's exact test), Q value = 0.2

Table S19080.  Gene #1814: 'DOPEY2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
DOPEY2 MUTATED 4 0 7
DOPEY2 WILD-TYPE 83 80 93

Figure S4710.  Get High-res Image Gene #1814: 'DOPEY2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'DOPEY2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S19081.  Gene #1814: 'DOPEY2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
DOPEY2 MUTATED 3 5 5
DOPEY2 WILD-TYPE 86 155 133
'DOPEY2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.709 (Fisher's exact test), Q value = 0.98

Table S19082.  Gene #1814: 'DOPEY2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
DOPEY2 MUTATED 7 5 1
DOPEY2 WILD-TYPE 175 128 71
'DOPEY2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0476 (Fisher's exact test), Q value = 0.23

Table S19083.  Gene #1814: 'DOPEY2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
DOPEY2 MUTATED 2 8 2 4
DOPEY2 WILD-TYPE 110 88 90 182

Figure S4711.  Get High-res Image Gene #1814: 'DOPEY2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'DOPEY2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0156 (Fisher's exact test), Q value = 0.12

Table S19084.  Gene #1814: 'DOPEY2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
DOPEY2 MUTATED 2 2 5 2 1 0 4
DOPEY2 WILD-TYPE 58 48 44 38 62 125 95

Figure S4712.  Get High-res Image Gene #1814: 'DOPEY2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'DOPEY2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0721 (Fisher's exact test), Q value = 0.29

Table S19085.  Gene #1814: 'DOPEY2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
DOPEY2 MUTATED 8 3 0 4
DOPEY2 WILD-TYPE 122 75 68 192
'DOPEY2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0266 (Fisher's exact test), Q value = 0.17

Table S19086.  Gene #1814: 'DOPEY2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
DOPEY2 MUTATED 1 4 0 2 7 1 0 0 0
DOPEY2 WILD-TYPE 39 58 28 78 62 47 43 28 74

Figure S4713.  Get High-res Image Gene #1814: 'DOPEY2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'DOPEY2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.361 (Fisher's exact test), Q value = 0.69

Table S19087.  Gene #1814: 'DOPEY2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
DOPEY2 MUTATED 1 1 0 2
DOPEY2 WILD-TYPE 32 30 27 17
'DOPEY2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S19088.  Gene #1814: 'DOPEY2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
DOPEY2 MUTATED 2 0 1 1
DOPEY2 WILD-TYPE 52 10 23 21
'LCN9 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.537 (Fisher's exact test), Q value = 0.86

Table S19089.  Gene #1815: 'LCN9 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
LCN9 MUTATED 3 1 0 0
LCN9 WILD-TYPE 175 182 101 20
'LCN9 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S19090.  Gene #1815: 'LCN9 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
LCN9 MUTATED 1 1 1
LCN9 WILD-TYPE 86 79 99
'LCN9 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.92 (Fisher's exact test), Q value = 1

Table S19091.  Gene #1815: 'LCN9 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
LCN9 MUTATED 1 1 1 1
LCN9 WILD-TYPE 111 95 91 185
'LCN9 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.519 (Fisher's exact test), Q value = 0.84

Table S19092.  Gene #1815: 'LCN9 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
LCN9 MUTATED 1 0 0 1 1 1 0
LCN9 WILD-TYPE 59 50 49 39 62 124 99
'LCN9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.665 (Fisher's exact test), Q value = 0.95

Table S19093.  Gene #1815: 'LCN9 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
LCN9 MUTATED 1 1 1 1
LCN9 WILD-TYPE 129 77 67 195
'LCN9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.652 (Fisher's exact test), Q value = 0.94

Table S19094.  Gene #1815: 'LCN9 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
LCN9 MUTATED 1 1 0 1 0 0 1 0 0
LCN9 WILD-TYPE 39 61 28 79 69 48 42 28 74
'LAMB4 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00156 (Fisher's exact test), Q value = 0.033

Table S19095.  Gene #1816: 'LAMB4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
LAMB4 MUTATED 5 0 1 6
LAMB4 WILD-TYPE 41 58 63 37

Figure S4714.  Get High-res Image Gene #1816: 'LAMB4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'LAMB4 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0204 (Fisher's exact test), Q value = 0.14

Table S19096.  Gene #1816: 'LAMB4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
LAMB4 MUTATED 7 2 3
LAMB4 WILD-TYPE 44 81 74

Figure S4715.  Get High-res Image Gene #1816: 'LAMB4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'LAMB4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0469 (Fisher's exact test), Q value = 0.23

Table S19097.  Gene #1816: 'LAMB4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
LAMB4 MUTATED 17 5 6 1
LAMB4 WILD-TYPE 161 178 95 19

Figure S4716.  Get High-res Image Gene #1816: 'LAMB4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'LAMB4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.132 (Fisher's exact test), Q value = 0.41

Table S19098.  Gene #1816: 'LAMB4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
LAMB4 MUTATED 9 2 7
LAMB4 WILD-TYPE 78 78 93
'LAMB4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0823 (Fisher's exact test), Q value = 0.31

Table S19099.  Gene #1816: 'LAMB4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
LAMB4 MUTATED 6 6 14
LAMB4 WILD-TYPE 83 154 124
'LAMB4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.419 (Fisher's exact test), Q value = 0.75

Table S19100.  Gene #1816: 'LAMB4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
LAMB4 MUTATED 14 6 6
LAMB4 WILD-TYPE 168 127 66
'LAMB4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.585 (Fisher's exact test), Q value = 0.89

Table S19101.  Gene #1816: 'LAMB4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
LAMB4 MUTATED 6 9 5 10
LAMB4 WILD-TYPE 106 87 87 176
'LAMB4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.141 (Fisher's exact test), Q value = 0.42

Table S19102.  Gene #1816: 'LAMB4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
LAMB4 MUTATED 4 4 3 2 5 2 10
LAMB4 WILD-TYPE 56 46 46 38 58 123 89
'LAMB4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.884 (Fisher's exact test), Q value = 1

Table S19103.  Gene #1816: 'LAMB4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
LAMB4 MUTATED 8 6 3 12
LAMB4 WILD-TYPE 122 72 65 184
'LAMB4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.137 (Fisher's exact test), Q value = 0.41

Table S19104.  Gene #1816: 'LAMB4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
LAMB4 MUTATED 3 5 0 2 9 3 4 1 2
LAMB4 WILD-TYPE 37 57 28 78 60 45 39 27 72
'LAMB4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.792 (Fisher's exact test), Q value = 1

Table S19105.  Gene #1816: 'LAMB4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
LAMB4 MUTATED 2 3 1 2
LAMB4 WILD-TYPE 31 28 26 17
'LAMB4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.769 (Fisher's exact test), Q value = 1

Table S19106.  Gene #1816: 'LAMB4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
LAMB4 MUTATED 5 1 1 1
LAMB4 WILD-TYPE 49 9 23 21
'MED24 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.818 (Fisher's exact test), Q value = 1

Table S19107.  Gene #1817: 'MED24 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
MED24 MUTATED 1 1 1 2
MED24 WILD-TYPE 45 57 63 41
'MED24 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.638 (Fisher's exact test), Q value = 0.93

Table S19108.  Gene #1817: 'MED24 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
MED24 MUTATED 1 1 3
MED24 WILD-TYPE 50 82 74
'MED24 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.169 (Fisher's exact test), Q value = 0.46

Table S19109.  Gene #1817: 'MED24 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
MED24 MUTATED 8 2 1 0
MED24 WILD-TYPE 170 181 100 20
'MED24 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.195 (Fisher's exact test), Q value = 0.5

Table S19110.  Gene #1817: 'MED24 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
MED24 MUTATED 1 0 4
MED24 WILD-TYPE 86 80 96
'MED24 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.919 (Fisher's exact test), Q value = 1

Table S19111.  Gene #1817: 'MED24 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
MED24 MUTATED 2 5 3
MED24 WILD-TYPE 87 155 135
'MED24 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.359 (Fisher's exact test), Q value = 0.69

Table S19112.  Gene #1817: 'MED24 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
MED24 MUTATED 6 4 0
MED24 WILD-TYPE 176 129 72
'MED24 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.222 (Fisher's exact test), Q value = 0.54

Table S19113.  Gene #1817: 'MED24 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
MED24 MUTATED 0 2 3 6
MED24 WILD-TYPE 112 94 89 180
'MED24 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.324 (Fisher's exact test), Q value = 0.65

Table S19114.  Gene #1817: 'MED24 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
MED24 MUTATED 1 1 3 0 1 1 4
MED24 WILD-TYPE 59 49 46 40 62 124 95
'MED24 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.691 (Fisher's exact test), Q value = 0.97

Table S19115.  Gene #1817: 'MED24 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
MED24 MUTATED 2 2 0 5
MED24 WILD-TYPE 128 76 68 191
'MED24 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.119 (Fisher's exact test), Q value = 0.38

Table S19116.  Gene #1817: 'MED24 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
MED24 MUTATED 0 2 0 1 5 1 0 0 0
MED24 WILD-TYPE 40 60 28 79 64 47 43 28 74
'CUBN MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0228 (Fisher's exact test), Q value = 0.15

Table S19117.  Gene #1818: 'CUBN MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
CUBN MUTATED 9 3 3 7
CUBN WILD-TYPE 37 55 61 36

Figure S4717.  Get High-res Image Gene #1818: 'CUBN MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'CUBN MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0685 (Fisher's exact test), Q value = 0.28

Table S19118.  Gene #1818: 'CUBN MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
CUBN MUTATED 10 6 6
CUBN WILD-TYPE 41 77 71
'CUBN MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S19119.  Gene #1818: 'CUBN MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
CUBN MUTATED 39 12 4 2
CUBN WILD-TYPE 139 171 97 18

Figure S4718.  Get High-res Image Gene #1818: 'CUBN MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'CUBN MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0683 (Fisher's exact test), Q value = 0.28

Table S19120.  Gene #1818: 'CUBN MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
CUBN MUTATED 8 7 19
CUBN WILD-TYPE 79 73 81
'CUBN MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.979 (Fisher's exact test), Q value = 1

Table S19121.  Gene #1818: 'CUBN MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
CUBN MUTATED 11 19 18
CUBN WILD-TYPE 78 141 120
'CUBN MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S19122.  Gene #1818: 'CUBN MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
CUBN MUTATED 23 16 9
CUBN WILD-TYPE 159 117 63
'CUBN MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.06 (Fisher's exact test), Q value = 0.27

Table S19123.  Gene #1818: 'CUBN MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
CUBN MUTATED 7 12 17 21
CUBN WILD-TYPE 105 84 75 165
'CUBN MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 2e-04 (Fisher's exact test), Q value = 0.0083

Table S19124.  Gene #1818: 'CUBN MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
CUBN MUTATED 5 5 16 3 6 6 16
CUBN WILD-TYPE 55 45 33 37 57 119 83

Figure S4719.  Get High-res Image Gene #1818: 'CUBN MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CUBN MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0644 (Fisher's exact test), Q value = 0.28

Table S19125.  Gene #1818: 'CUBN MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
CUBN MUTATED 18 11 2 24
CUBN WILD-TYPE 112 67 66 172
'CUBN MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00011 (Fisher's exact test), Q value = 0.0056

Table S19126.  Gene #1818: 'CUBN MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
CUBN MUTATED 6 11 4 2 18 3 4 4 3
CUBN WILD-TYPE 34 51 24 78 51 45 39 24 71

Figure S4720.  Get High-res Image Gene #1818: 'CUBN MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'CUBN MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00029 (Fisher's exact test), Q value = 0.011

Table S19127.  Gene #1818: 'CUBN MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
CUBN MUTATED 7 1 0 7
CUBN WILD-TYPE 26 30 27 12

Figure S4721.  Get High-res Image Gene #1818: 'CUBN MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'CUBN MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.202 (Fisher's exact test), Q value = 0.51

Table S19128.  Gene #1818: 'CUBN MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
CUBN MUTATED 11 0 3 1
CUBN WILD-TYPE 43 10 21 21
'ACVR1C MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.785 (Fisher's exact test), Q value = 1

Table S19129.  Gene #1819: 'ACVR1C MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ACVR1C MUTATED 1 0 1 1
ACVR1C WILD-TYPE 45 58 63 42
'ACVR1C MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.348 (Fisher's exact test), Q value = 0.68

Table S19130.  Gene #1819: 'ACVR1C MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ACVR1C MUTATED 1 0 2
ACVR1C WILD-TYPE 50 83 75
'ACVR1C MUTATION STATUS' versus 'CN_CNMF'

P value = 0.609 (Fisher's exact test), Q value = 0.91

Table S19131.  Gene #1819: 'ACVR1C MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ACVR1C MUTATED 4 3 4 0
ACVR1C WILD-TYPE 174 180 97 20
'ACVR1C MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S19132.  Gene #1819: 'ACVR1C MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ACVR1C MUTATED 3 2 3
ACVR1C WILD-TYPE 84 78 97
'ACVR1C MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00817 (Fisher's exact test), Q value = 0.084

Table S19133.  Gene #1819: 'ACVR1C MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ACVR1C MUTATED 0 1 7
ACVR1C WILD-TYPE 89 159 131

Figure S4722.  Get High-res Image Gene #1819: 'ACVR1C MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'ACVR1C MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.288 (Fisher's exact test), Q value = 0.62

Table S19134.  Gene #1819: 'ACVR1C MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ACVR1C MUTATED 6 2 0
ACVR1C WILD-TYPE 176 131 72
'ACVR1C MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.663 (Fisher's exact test), Q value = 0.95

Table S19135.  Gene #1819: 'ACVR1C MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ACVR1C MUTATED 2 3 3 3
ACVR1C WILD-TYPE 110 93 89 183
'ACVR1C MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.44 (Fisher's exact test), Q value = 0.77

Table S19136.  Gene #1819: 'ACVR1C MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ACVR1C MUTATED 2 1 3 0 2 2 1
ACVR1C WILD-TYPE 58 49 46 40 61 123 98
'ACVR1C MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.113 (Fisher's exact test), Q value = 0.37

Table S19137.  Gene #1819: 'ACVR1C MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ACVR1C MUTATED 6 0 0 5
ACVR1C WILD-TYPE 124 78 68 191
'ACVR1C MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.542 (Fisher's exact test), Q value = 0.86

Table S19138.  Gene #1819: 'ACVR1C MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ACVR1C MUTATED 1 0 1 2 4 0 1 0 2
ACVR1C WILD-TYPE 39 62 27 78 65 48 42 28 72
'ACVR1C MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.254 (Fisher's exact test), Q value = 0.58

Table S19139.  Gene #1819: 'ACVR1C MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
ACVR1C MUTATED 2 0 0 1
ACVR1C WILD-TYPE 31 31 27 18
'ACVR1C MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S19140.  Gene #1819: 'ACVR1C MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
ACVR1C MUTATED 2 0 1 0
ACVR1C WILD-TYPE 52 10 23 22
'MKLN1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.222 (Fisher's exact test), Q value = 0.54

Table S19141.  Gene #1820: 'MKLN1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
MKLN1 MUTATED 2 1 0 2
MKLN1 WILD-TYPE 44 57 64 41
'MKLN1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.253 (Fisher's exact test), Q value = 0.58

Table S19142.  Gene #1820: 'MKLN1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
MKLN1 MUTATED 3 1 1
MKLN1 WILD-TYPE 48 82 76
'MKLN1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.211 (Fisher's exact test), Q value = 0.52

Table S19143.  Gene #1820: 'MKLN1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
MKLN1 MUTATED 7 4 0 0
MKLN1 WILD-TYPE 171 179 101 20
'MKLN1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.325 (Fisher's exact test), Q value = 0.65

Table S19144.  Gene #1820: 'MKLN1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
MKLN1 MUTATED 4 1 1
MKLN1 WILD-TYPE 83 79 99
'MKLN1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S19145.  Gene #1820: 'MKLN1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
MKLN1 MUTATED 2 4 4
MKLN1 WILD-TYPE 87 156 134
'MKLN1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.165 (Fisher's exact test), Q value = 0.46

Table S19146.  Gene #1820: 'MKLN1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
MKLN1 MUTATED 2 5 3
MKLN1 WILD-TYPE 180 128 69
'MKLN1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S19147.  Gene #1820: 'MKLN1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
MKLN1 MUTATED 3 2 2 4
MKLN1 WILD-TYPE 109 94 90 182
'MKLN1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.571 (Fisher's exact test), Q value = 0.88

Table S19148.  Gene #1820: 'MKLN1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
MKLN1 MUTATED 2 1 1 0 3 1 3
MKLN1 WILD-TYPE 58 49 48 40 60 124 96
'MKLN1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.548 (Fisher's exact test), Q value = 0.87

Table S19149.  Gene #1820: 'MKLN1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
MKLN1 MUTATED 1 2 2 6
MKLN1 WILD-TYPE 129 76 66 190
'MKLN1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.361 (Fisher's exact test), Q value = 0.69

Table S19150.  Gene #1820: 'MKLN1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
MKLN1 MUTATED 0 2 0 1 5 0 1 0 2
MKLN1 WILD-TYPE 40 60 28 79 64 48 42 28 72
'IFNA2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0746 (Fisher's exact test), Q value = 0.29

Table S19151.  Gene #1821: 'IFNA2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
IFNA2 MUTATED 2 0 0 2
IFNA2 WILD-TYPE 44 58 64 41
'IFNA2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0403 (Fisher's exact test), Q value = 0.21

Table S19152.  Gene #1821: 'IFNA2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
IFNA2 MUTATED 3 0 1
IFNA2 WILD-TYPE 48 83 76

Figure S4723.  Get High-res Image Gene #1821: 'IFNA2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'IFNA2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0117 (Fisher's exact test), Q value = 0.11

Table S19153.  Gene #1821: 'IFNA2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
IFNA2 MUTATED 9 1 0 0
IFNA2 WILD-TYPE 169 182 101 20

Figure S4724.  Get High-res Image Gene #1821: 'IFNA2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'IFNA2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.682 (Fisher's exact test), Q value = 0.96

Table S19154.  Gene #1821: 'IFNA2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
IFNA2 MUTATED 3 1 2
IFNA2 WILD-TYPE 84 79 98
'IFNA2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.212 (Fisher's exact test), Q value = 0.52

Table S19155.  Gene #1821: 'IFNA2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
IFNA2 MUTATED 0 4 5
IFNA2 WILD-TYPE 89 156 133
'IFNA2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.498 (Fisher's exact test), Q value = 0.82

Table S19156.  Gene #1821: 'IFNA2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
IFNA2 MUTATED 3 5 1
IFNA2 WILD-TYPE 179 128 71
'IFNA2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.846 (Fisher's exact test), Q value = 1

Table S19157.  Gene #1821: 'IFNA2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
IFNA2 MUTATED 2 3 1 4
IFNA2 WILD-TYPE 110 93 91 182
'IFNA2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0269 (Fisher's exact test), Q value = 0.17

Table S19158.  Gene #1821: 'IFNA2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
IFNA2 MUTATED 3 1 3 0 0 0 3
IFNA2 WILD-TYPE 57 49 46 40 63 125 96

Figure S4725.  Get High-res Image Gene #1821: 'IFNA2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'IFNA2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.475 (Fisher's exact test), Q value = 0.8

Table S19159.  Gene #1821: 'IFNA2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
IFNA2 MUTATED 4 2 0 3
IFNA2 WILD-TYPE 126 76 68 193
'IFNA2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.335 (Fisher's exact test), Q value = 0.66

Table S19160.  Gene #1821: 'IFNA2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
IFNA2 MUTATED 1 2 0 0 3 1 1 1 0
IFNA2 WILD-TYPE 39 60 28 80 66 47 42 27 74
'MPHOSPH9 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.439 (Fisher's exact test), Q value = 0.77

Table S19161.  Gene #1822: 'MPHOSPH9 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
MPHOSPH9 MUTATED 2 0 1 1
MPHOSPH9 WILD-TYPE 44 58 63 42
'MPHOSPH9 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.453 (Fisher's exact test), Q value = 0.78

Table S19162.  Gene #1822: 'MPHOSPH9 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
MPHOSPH9 MUTATED 0 3 1
MPHOSPH9 WILD-TYPE 51 80 76
'MPHOSPH9 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.277 (Fisher's exact test), Q value = 0.6

Table S19163.  Gene #1822: 'MPHOSPH9 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
MPHOSPH9 MUTATED 7 2 1 0
MPHOSPH9 WILD-TYPE 171 181 100 20
'MPHOSPH9 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.877 (Fisher's exact test), Q value = 1

Table S19164.  Gene #1822: 'MPHOSPH9 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
MPHOSPH9 MUTATED 2 1 3
MPHOSPH9 WILD-TYPE 85 79 97
'MPHOSPH9 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.818 (Fisher's exact test), Q value = 1

Table S19165.  Gene #1822: 'MPHOSPH9 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
MPHOSPH9 MUTATED 2 4 2
MPHOSPH9 WILD-TYPE 87 156 136
'MPHOSPH9 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.642 (Fisher's exact test), Q value = 0.93

Table S19166.  Gene #1822: 'MPHOSPH9 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
MPHOSPH9 MUTATED 3 4 1
MPHOSPH9 WILD-TYPE 179 129 71
'MPHOSPH9 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.691 (Fisher's exact test), Q value = 0.97

Table S19167.  Gene #1822: 'MPHOSPH9 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
MPHOSPH9 MUTATED 1 2 3 4
MPHOSPH9 WILD-TYPE 111 94 89 182
'MPHOSPH9 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0766 (Fisher's exact test), Q value = 0.3

Table S19168.  Gene #1822: 'MPHOSPH9 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
MPHOSPH9 MUTATED 2 0 4 0 0 3 1
MPHOSPH9 WILD-TYPE 58 50 45 40 63 122 98
'MPHOSPH9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.936 (Fisher's exact test), Q value = 1

Table S19169.  Gene #1822: 'MPHOSPH9 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
MPHOSPH9 MUTATED 2 2 1 5
MPHOSPH9 WILD-TYPE 128 76 67 191
'MPHOSPH9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.604 (Fisher's exact test), Q value = 0.91

Table S19170.  Gene #1822: 'MPHOSPH9 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
MPHOSPH9 MUTATED 0 1 0 2 4 0 1 1 1
MPHOSPH9 WILD-TYPE 40 61 28 78 65 48 42 27 73
'MPHOSPH9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.148 (Fisher's exact test), Q value = 0.43

Table S19171.  Gene #1822: 'MPHOSPH9 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
MPHOSPH9 MUTATED 3 0 0 1
MPHOSPH9 WILD-TYPE 30 31 27 18
'MPHOSPH9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S19172.  Gene #1822: 'MPHOSPH9 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
MPHOSPH9 MUTATED 2 0 1 1
MPHOSPH9 WILD-TYPE 52 10 23 21
'TM7SF4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0509 (Fisher's exact test), Q value = 0.24

Table S19173.  Gene #1823: 'TM7SF4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
TM7SF4 MUTATED 6 0 3 0
TM7SF4 WILD-TYPE 172 183 98 20
'TM7SF4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.821 (Fisher's exact test), Q value = 1

Table S19174.  Gene #1823: 'TM7SF4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
TM7SF4 MUTATED 2 2 4
TM7SF4 WILD-TYPE 85 78 96
'TM7SF4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.213 (Fisher's exact test), Q value = 0.52

Table S19175.  Gene #1823: 'TM7SF4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
TM7SF4 MUTATED 0 4 5
TM7SF4 WILD-TYPE 89 156 133
'TM7SF4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.823 (Fisher's exact test), Q value = 1

Table S19176.  Gene #1823: 'TM7SF4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
TM7SF4 MUTATED 4 4 1
TM7SF4 WILD-TYPE 178 129 71
'TM7SF4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.712 (Fisher's exact test), Q value = 0.98

Table S19177.  Gene #1823: 'TM7SF4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
TM7SF4 MUTATED 2 1 3 3
TM7SF4 WILD-TYPE 110 95 89 183
'TM7SF4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.609 (Fisher's exact test), Q value = 0.91

Table S19178.  Gene #1823: 'TM7SF4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
TM7SF4 MUTATED 1 0 2 1 1 1 3
TM7SF4 WILD-TYPE 59 50 47 39 62 124 96
'TM7SF4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.76 (Fisher's exact test), Q value = 1

Table S19179.  Gene #1823: 'TM7SF4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
TM7SF4 MUTATED 3 2 0 4
TM7SF4 WILD-TYPE 127 76 68 192
'TM7SF4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.752 (Fisher's exact test), Q value = 1

Table S19180.  Gene #1823: 'TM7SF4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
TM7SF4 MUTATED 1 3 1 1 1 0 1 0 1
TM7SF4 WILD-TYPE 39 59 27 79 68 48 42 28 73
'ZNF585B MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0657 (Fisher's exact test), Q value = 0.28

Table S19181.  Gene #1824: 'ZNF585B MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ZNF585B MUTATED 1 0 0 2
ZNF585B WILD-TYPE 45 58 64 41
'ZNF585B MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S19182.  Gene #1824: 'ZNF585B MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ZNF585B MUTATED 1 1 1
ZNF585B WILD-TYPE 50 82 76
'ZNF585B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.205 (Fisher's exact test), Q value = 0.51

Table S19183.  Gene #1824: 'ZNF585B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ZNF585B MUTATED 6 1 1 0
ZNF585B WILD-TYPE 172 182 100 20
'ZNF585B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.629 (Fisher's exact test), Q value = 0.93

Table S19184.  Gene #1824: 'ZNF585B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ZNF585B MUTATED 1 1 3
ZNF585B WILD-TYPE 86 79 97
'ZNF585B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0889 (Fisher's exact test), Q value = 0.32

Table S19185.  Gene #1824: 'ZNF585B MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ZNF585B MUTATED 2 5 0
ZNF585B WILD-TYPE 87 155 138
'ZNF585B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.166 (Fisher's exact test), Q value = 0.46

Table S19186.  Gene #1824: 'ZNF585B MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ZNF585B MUTATED 1 4 2
ZNF585B WILD-TYPE 181 129 70
'ZNF585B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.653 (Fisher's exact test), Q value = 0.94

Table S19187.  Gene #1824: 'ZNF585B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ZNF585B MUTATED 1 1 3 3
ZNF585B WILD-TYPE 111 95 89 183
'ZNF585B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.247 (Fisher's exact test), Q value = 0.57

Table S19188.  Gene #1824: 'ZNF585B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ZNF585B MUTATED 1 1 2 0 2 0 2
ZNF585B WILD-TYPE 59 49 47 40 61 125 97
'ZNF585B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.636 (Fisher's exact test), Q value = 0.93

Table S19189.  Gene #1824: 'ZNF585B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ZNF585B MUTATED 3 2 0 3
ZNF585B WILD-TYPE 127 76 68 193
'ZNF585B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.147 (Fisher's exact test), Q value = 0.43

Table S19190.  Gene #1824: 'ZNF585B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ZNF585B MUTATED 2 1 1 0 3 1 0 0 0
ZNF585B WILD-TYPE 38 61 27 80 66 47 43 28 74
'ATP1A4 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00877 (Fisher's exact test), Q value = 0.087

Table S19191.  Gene #1825: 'ATP1A4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ATP1A4 MUTATED 3 0 0 3
ATP1A4 WILD-TYPE 43 58 64 40

Figure S4726.  Get High-res Image Gene #1825: 'ATP1A4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'ATP1A4 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.337 (Fisher's exact test), Q value = 0.66

Table S19192.  Gene #1825: 'ATP1A4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ATP1A4 MUTATED 3 2 1
ATP1A4 WILD-TYPE 48 81 76
'ATP1A4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00304 (Fisher's exact test), Q value = 0.049

Table S19193.  Gene #1825: 'ATP1A4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ATP1A4 MUTATED 15 2 2 0
ATP1A4 WILD-TYPE 163 181 99 20

Figure S4727.  Get High-res Image Gene #1825: 'ATP1A4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ATP1A4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.725 (Fisher's exact test), Q value = 0.99

Table S19194.  Gene #1825: 'ATP1A4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ATP1A4 MUTATED 3 4 6
ATP1A4 WILD-TYPE 84 76 94
'ATP1A4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.319 (Fisher's exact test), Q value = 0.65

Table S19195.  Gene #1825: 'ATP1A4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ATP1A4 MUTATED 1 6 7
ATP1A4 WILD-TYPE 88 154 131
'ATP1A4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.364 (Fisher's exact test), Q value = 0.69

Table S19196.  Gene #1825: 'ATP1A4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ATP1A4 MUTATED 6 7 1
ATP1A4 WILD-TYPE 176 126 71
'ATP1A4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.851 (Fisher's exact test), Q value = 1

Table S19197.  Gene #1825: 'ATP1A4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ATP1A4 MUTATED 4 5 4 6
ATP1A4 WILD-TYPE 108 91 88 180
'ATP1A4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0216 (Fisher's exact test), Q value = 0.15

Table S19198.  Gene #1825: 'ATP1A4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ATP1A4 MUTATED 2 3 6 0 3 1 4
ATP1A4 WILD-TYPE 58 47 43 40 60 124 95

Figure S4728.  Get High-res Image Gene #1825: 'ATP1A4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ATP1A4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.912 (Fisher's exact test), Q value = 1

Table S19199.  Gene #1825: 'ATP1A4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ATP1A4 MUTATED 6 2 3 8
ATP1A4 WILD-TYPE 124 76 65 188
'ATP1A4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0105 (Fisher's exact test), Q value = 0.098

Table S19200.  Gene #1825: 'ATP1A4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ATP1A4 MUTATED 0 3 4 2 7 0 2 0 1
ATP1A4 WILD-TYPE 40 59 24 78 62 48 41 28 73

Figure S4729.  Get High-res Image Gene #1825: 'ATP1A4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'ATP1A4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.271 (Fisher's exact test), Q value = 0.6

Table S19201.  Gene #1825: 'ATP1A4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
ATP1A4 MUTATED 1 0 1 2
ATP1A4 WILD-TYPE 32 31 26 17
'ATP1A4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.015 (Fisher's exact test), Q value = 0.12

Table S19202.  Gene #1825: 'ATP1A4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
ATP1A4 MUTATED 0 1 3 0
ATP1A4 WILD-TYPE 54 9 21 22

Figure S4730.  Get High-res Image Gene #1825: 'ATP1A4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

'GUCY2F MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0265 (Fisher's exact test), Q value = 0.16

Table S19203.  Gene #1826: 'GUCY2F MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
GUCY2F MUTATED 3 1 0 4
GUCY2F WILD-TYPE 43 57 64 39

Figure S4731.  Get High-res Image Gene #1826: 'GUCY2F MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'GUCY2F MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.307 (Fisher's exact test), Q value = 0.64

Table S19204.  Gene #1826: 'GUCY2F MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
GUCY2F MUTATED 4 2 2
GUCY2F WILD-TYPE 47 81 75
'GUCY2F MUTATION STATUS' versus 'CN_CNMF'

P value = 0.15 (Fisher's exact test), Q value = 0.43

Table S19205.  Gene #1826: 'GUCY2F MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
GUCY2F MUTATED 14 6 3 0
GUCY2F WILD-TYPE 164 177 98 20
'GUCY2F MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.21 (Fisher's exact test), Q value = 0.52

Table S19206.  Gene #1826: 'GUCY2F MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
GUCY2F MUTATED 2 4 8
GUCY2F WILD-TYPE 85 76 92
'GUCY2F MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.9 (Fisher's exact test), Q value = 1

Table S19207.  Gene #1826: 'GUCY2F MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
GUCY2F MUTATED 4 7 5
GUCY2F WILD-TYPE 85 153 133
'GUCY2F MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.628 (Fisher's exact test), Q value = 0.92

Table S19208.  Gene #1826: 'GUCY2F MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
GUCY2F MUTATED 6 6 4
GUCY2F WILD-TYPE 176 127 68
'GUCY2F MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.92 (Fisher's exact test), Q value = 1

Table S19209.  Gene #1826: 'GUCY2F MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
GUCY2F MUTATED 6 5 3 9
GUCY2F WILD-TYPE 106 91 89 177
'GUCY2F MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0316 (Fisher's exact test), Q value = 0.18

Table S19210.  Gene #1826: 'GUCY2F MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
GUCY2F MUTATED 5 3 5 2 0 2 6
GUCY2F WILD-TYPE 55 47 44 38 63 123 93

Figure S4732.  Get High-res Image Gene #1826: 'GUCY2F MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'GUCY2F MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.324 (Fisher's exact test), Q value = 0.65

Table S19211.  Gene #1826: 'GUCY2F MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
GUCY2F MUTATED 6 1 3 13
GUCY2F WILD-TYPE 124 77 65 183
'GUCY2F MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0524 (Fisher's exact test), Q value = 0.25

Table S19212.  Gene #1826: 'GUCY2F MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
GUCY2F MUTATED 2 1 3 2 8 1 3 2 1
GUCY2F WILD-TYPE 38 61 25 78 61 47 40 26 73
'GUCY2F MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.382 (Fisher's exact test), Q value = 0.71

Table S19213.  Gene #1826: 'GUCY2F MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
GUCY2F MUTATED 3 0 2 1
GUCY2F WILD-TYPE 30 31 25 18
'GUCY2F MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.305 (Fisher's exact test), Q value = 0.63

Table S19214.  Gene #1826: 'GUCY2F MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
GUCY2F MUTATED 2 0 1 3
GUCY2F WILD-TYPE 52 10 23 19
'DRD3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0646 (Fisher's exact test), Q value = 0.28

Table S19215.  Gene #1827: 'DRD3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
DRD3 MUTATED 1 0 0 2
DRD3 WILD-TYPE 45 58 64 41
'DRD3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.253 (Fisher's exact test), Q value = 0.58

Table S19216.  Gene #1827: 'DRD3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
DRD3 MUTATED 2 1 0
DRD3 WILD-TYPE 49 82 77
'DRD3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.525 (Fisher's exact test), Q value = 0.85

Table S19217.  Gene #1827: 'DRD3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
DRD3 MUTATED 4 1 1 0
DRD3 WILD-TYPE 174 182 100 20
'DRD3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.296 (Fisher's exact test), Q value = 0.62

Table S19218.  Gene #1827: 'DRD3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
DRD3 MUTATED 2 1 0
DRD3 WILD-TYPE 85 79 100
'DRD3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.583 (Fisher's exact test), Q value = 0.89

Table S19219.  Gene #1827: 'DRD3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
DRD3 MUTATED 1 4 1
DRD3 WILD-TYPE 88 156 137
'DRD3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.859 (Fisher's exact test), Q value = 1

Table S19220.  Gene #1827: 'DRD3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
DRD3 MUTATED 2 3 1
DRD3 WILD-TYPE 180 130 71
'DRD3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S19221.  Gene #1827: 'DRD3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
DRD3 MUTATED 1 1 1 3
DRD3 WILD-TYPE 111 95 91 183
'DRD3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.365 (Fisher's exact test), Q value = 0.69

Table S19222.  Gene #1827: 'DRD3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
DRD3 MUTATED 1 1 0 0 1 0 3
DRD3 WILD-TYPE 59 49 49 40 62 125 96
'DRD3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.639 (Fisher's exact test), Q value = 0.93

Table S19223.  Gene #1827: 'DRD3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
DRD3 MUTATED 2 0 0 4
DRD3 WILD-TYPE 128 78 68 192
'DRD3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.788 (Fisher's exact test), Q value = 1

Table S19224.  Gene #1827: 'DRD3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
DRD3 MUTATED 0 0 1 1 2 1 0 0 1
DRD3 WILD-TYPE 40 62 27 79 67 47 43 28 73
'SMG7 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.856 (Fisher's exact test), Q value = 1

Table S19225.  Gene #1828: 'SMG7 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
SMG7 MUTATED 1 1 3 1
SMG7 WILD-TYPE 45 57 61 42
'SMG7 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.446 (Fisher's exact test), Q value = 0.77

Table S19226.  Gene #1828: 'SMG7 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
SMG7 MUTATED 0 3 3
SMG7 WILD-TYPE 51 80 74
'SMG7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.672 (Fisher's exact test), Q value = 0.95

Table S19227.  Gene #1828: 'SMG7 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
SMG7 MUTATED 5 4 2 1
SMG7 WILD-TYPE 173 179 99 19
'SMG7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.773 (Fisher's exact test), Q value = 1

Table S19228.  Gene #1828: 'SMG7 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
SMG7 MUTATED 1 2 3
SMG7 WILD-TYPE 86 78 97
'SMG7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0636 (Fisher's exact test), Q value = 0.27

Table S19229.  Gene #1828: 'SMG7 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
SMG7 MUTATED 0 6 1
SMG7 WILD-TYPE 89 154 137
'SMG7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.102 (Fisher's exact test), Q value = 0.35

Table S19230.  Gene #1828: 'SMG7 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
SMG7 MUTATED 1 3 3
SMG7 WILD-TYPE 181 130 69
'SMG7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.329 (Fisher's exact test), Q value = 0.66

Table S19231.  Gene #1828: 'SMG7 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
SMG7 MUTATED 4 3 0 5
SMG7 WILD-TYPE 108 93 92 181
'SMG7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.333 (Fisher's exact test), Q value = 0.66

Table S19232.  Gene #1828: 'SMG7 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
SMG7 MUTATED 3 1 1 1 1 5 0
SMG7 WILD-TYPE 57 49 48 39 62 120 99
'SMG7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.824 (Fisher's exact test), Q value = 1

Table S19233.  Gene #1828: 'SMG7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
SMG7 MUTATED 2 2 2 6
SMG7 WILD-TYPE 128 76 66 190
'SMG7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.453 (Fisher's exact test), Q value = 0.78

Table S19234.  Gene #1828: 'SMG7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
SMG7 MUTATED 1 0 0 1 3 3 2 0 2
SMG7 WILD-TYPE 39 62 28 79 66 45 41 28 72
'SMG7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.627 (Fisher's exact test), Q value = 0.92

Table S19235.  Gene #1828: 'SMG7 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
SMG7 MUTATED 0 1 1 1
SMG7 WILD-TYPE 33 30 26 18
'SMG7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.694 (Fisher's exact test), Q value = 0.97

Table S19236.  Gene #1828: 'SMG7 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
SMG7 MUTATED 1 0 1 1
SMG7 WILD-TYPE 53 10 23 21
'OR51T1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.12 (Fisher's exact test), Q value = 0.39

Table S19237.  Gene #1829: 'OR51T1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
OR51T1 MUTATED 2 0 0 1
OR51T1 WILD-TYPE 44 58 64 42
'OR51T1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S19238.  Gene #1829: 'OR51T1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
OR51T1 MUTATED 1 1 1
OR51T1 WILD-TYPE 50 82 76
'OR51T1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.683 (Fisher's exact test), Q value = 0.96

Table S19239.  Gene #1829: 'OR51T1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
OR51T1 MUTATED 6 4 1 0
OR51T1 WILD-TYPE 172 179 100 20
'OR51T1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.724 (Fisher's exact test), Q value = 0.99

Table S19240.  Gene #1829: 'OR51T1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
OR51T1 MUTATED 3 2 5
OR51T1 WILD-TYPE 84 78 95
'OR51T1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.199 (Fisher's exact test), Q value = 0.5

Table S19241.  Gene #1829: 'OR51T1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
OR51T1 MUTATED 1 3 7
OR51T1 WILD-TYPE 88 157 131
'OR51T1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.427 (Fisher's exact test), Q value = 0.75

Table S19242.  Gene #1829: 'OR51T1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
OR51T1 MUTATED 4 6 1
OR51T1 WILD-TYPE 178 127 71
'OR51T1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.62 (Fisher's exact test), Q value = 0.92

Table S19243.  Gene #1829: 'OR51T1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
OR51T1 MUTATED 4 3 3 3
OR51T1 WILD-TYPE 108 93 89 183
'OR51T1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0621 (Fisher's exact test), Q value = 0.27

Table S19244.  Gene #1829: 'OR51T1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
OR51T1 MUTATED 3 2 4 1 0 1 2
OR51T1 WILD-TYPE 57 48 45 39 63 124 97
'OR51T1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.569 (Fisher's exact test), Q value = 0.88

Table S19245.  Gene #1829: 'OR51T1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
OR51T1 MUTATED 6 2 1 4
OR51T1 WILD-TYPE 124 76 67 192
'OR51T1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.703 (Fisher's exact test), Q value = 0.97

Table S19246.  Gene #1829: 'OR51T1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
OR51T1 MUTATED 1 2 2 3 3 0 1 0 1
OR51T1 WILD-TYPE 39 60 26 77 66 48 42 28 73
'OR51T1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S19247.  Gene #1829: 'OR51T1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
OR51T1 MUTATED 1 1 1 1
OR51T1 WILD-TYPE 32 30 26 18
'OR51T1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S19248.  Gene #1829: 'OR51T1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
OR51T1 MUTATED 2 0 1 1
OR51T1 WILD-TYPE 52 10 23 21
'NPPB MUTATION STATUS' versus 'CN_CNMF'

P value = 0.22 (Fisher's exact test), Q value = 0.53

Table S19249.  Gene #1830: 'NPPB MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
NPPB MUTATED 3 0 2 0
NPPB WILD-TYPE 175 183 99 20
'NPPB MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.324 (Fisher's exact test), Q value = 0.65

Table S19250.  Gene #1830: 'NPPB MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
NPPB MUTATED 0 1 3
NPPB WILD-TYPE 87 79 97
'NPPB MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.554 (Fisher's exact test), Q value = 0.87

Table S19251.  Gene #1830: 'NPPB MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
NPPB MUTATED 0 3 1
NPPB WILD-TYPE 89 157 137
'NPPB MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.529 (Fisher's exact test), Q value = 0.85

Table S19252.  Gene #1830: 'NPPB MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
NPPB MUTATED 1 2 1
NPPB WILD-TYPE 181 131 71
'NPPB MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.603 (Fisher's exact test), Q value = 0.91

Table S19253.  Gene #1830: 'NPPB MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
NPPB MUTATED 1 2 1 1
NPPB WILD-TYPE 111 94 91 185
'NPPB MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.21 (Fisher's exact test), Q value = 0.52

Table S19254.  Gene #1830: 'NPPB MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
NPPB MUTATED 1 1 2 0 0 1 0
NPPB WILD-TYPE 59 49 47 40 63 124 99
'NPPB MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.326 (Fisher's exact test), Q value = 0.66

Table S19255.  Gene #1830: 'NPPB MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
NPPB MUTATED 3 0 1 1
NPPB WILD-TYPE 127 78 67 195
'NPPB MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.86 (Fisher's exact test), Q value = 1

Table S19256.  Gene #1830: 'NPPB MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
NPPB MUTATED 1 0 0 1 2 0 0 0 1
NPPB WILD-TYPE 39 62 28 79 67 48 43 28 73
'ZNF643 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0156 (Fisher's exact test), Q value = 0.12

Table S19257.  Gene #1831: 'ZNF643 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ZNF643 MUTATED 1 0 0 3
ZNF643 WILD-TYPE 45 58 64 40

Figure S4733.  Get High-res Image Gene #1831: 'ZNF643 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'ZNF643 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S19258.  Gene #1831: 'ZNF643 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ZNF643 MUTATED 1 2 1
ZNF643 WILD-TYPE 50 81 76
'ZNF643 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.625 (Fisher's exact test), Q value = 0.92

Table S19259.  Gene #1831: 'ZNF643 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ZNF643 MUTATED 6 3 1 0
ZNF643 WILD-TYPE 172 180 100 20
'ZNF643 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S19260.  Gene #1831: 'ZNF643 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ZNF643 MUTATED 2 2 2
ZNF643 WILD-TYPE 85 78 98
'ZNF643 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.31 (Fisher's exact test), Q value = 0.64

Table S19261.  Gene #1831: 'ZNF643 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ZNF643 MUTATED 0 4 4
ZNF643 WILD-TYPE 89 156 134
'ZNF643 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.253 (Fisher's exact test), Q value = 0.58

Table S19262.  Gene #1831: 'ZNF643 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ZNF643 MUTATED 2 5 1
ZNF643 WILD-TYPE 180 128 71
'ZNF643 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.849 (Fisher's exact test), Q value = 1

Table S19263.  Gene #1831: 'ZNF643 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ZNF643 MUTATED 2 3 1 4
ZNF643 WILD-TYPE 110 93 91 182
'ZNF643 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.181 (Fisher's exact test), Q value = 0.48

Table S19264.  Gene #1831: 'ZNF643 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ZNF643 MUTATED 1 3 1 2 0 1 2
ZNF643 WILD-TYPE 59 47 48 38 63 124 97
'ZNF643 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S19265.  Gene #1831: 'ZNF643 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ZNF643 MUTATED 3 1 1 4
ZNF643 WILD-TYPE 127 77 67 192
'ZNF643 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.423 (Fisher's exact test), Q value = 0.75

Table S19266.  Gene #1831: 'ZNF643 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ZNF643 MUTATED 3 1 1 1 1 0 1 0 1
ZNF643 WILD-TYPE 37 61 27 79 68 48 42 28 73
'DUSP7 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S19267.  Gene #1832: 'DUSP7 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
DUSP7 MUTATED 3 3 2 0
DUSP7 WILD-TYPE 175 180 99 20
'DUSP7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.382 (Fisher's exact test), Q value = 0.71

Table S19268.  Gene #1832: 'DUSP7 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
DUSP7 MUTATED 1 1 4
DUSP7 WILD-TYPE 86 79 96
'DUSP7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.443 (Fisher's exact test), Q value = 0.77

Table S19269.  Gene #1832: 'DUSP7 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
DUSP7 MUTATED 2 1 3
DUSP7 WILD-TYPE 87 159 135
'DUSP7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S19270.  Gene #1832: 'DUSP7 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
DUSP7 MUTATED 3 2 1
DUSP7 WILD-TYPE 179 131 71
'DUSP7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.036 (Fisher's exact test), Q value = 0.2

Table S19271.  Gene #1832: 'DUSP7 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
DUSP7 MUTATED 1 5 0 2
DUSP7 WILD-TYPE 111 91 92 184

Figure S4734.  Get High-res Image Gene #1832: 'DUSP7 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'DUSP7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0174 (Fisher's exact test), Q value = 0.13

Table S19272.  Gene #1832: 'DUSP7 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
DUSP7 MUTATED 0 4 1 1 0 2 0
DUSP7 WILD-TYPE 60 46 48 39 63 123 99

Figure S4735.  Get High-res Image Gene #1832: 'DUSP7 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'DUSP7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.954 (Fisher's exact test), Q value = 1

Table S19273.  Gene #1832: 'DUSP7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
DUSP7 MUTATED 3 1 1 3
DUSP7 WILD-TYPE 127 77 67 193
'DUSP7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.637 (Fisher's exact test), Q value = 0.93

Table S19274.  Gene #1832: 'DUSP7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
DUSP7 MUTATED 1 1 1 3 1 0 1 0 0
DUSP7 WILD-TYPE 39 61 27 77 68 48 42 28 74
'ZDHHC21 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.89 (Fisher's exact test), Q value = 1

Table S19275.  Gene #1833: 'ZDHHC21 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ZDHHC21 MUTATED 0 1 1 1
ZDHHC21 WILD-TYPE 46 57 63 42
'ZDHHC21 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.619 (Fisher's exact test), Q value = 0.92

Table S19276.  Gene #1833: 'ZDHHC21 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ZDHHC21 MUTATED 0 1 2
ZDHHC21 WILD-TYPE 51 82 75
'ZDHHC21 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.791 (Fisher's exact test), Q value = 1

Table S19277.  Gene #1833: 'ZDHHC21 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ZDHHC21 MUTATED 3 1 1 0
ZDHHC21 WILD-TYPE 175 182 100 20
'ZDHHC21 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.556 (Fisher's exact test), Q value = 0.87

Table S19278.  Gene #1833: 'ZDHHC21 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ZDHHC21 MUTATED 0 3 1
ZDHHC21 WILD-TYPE 89 157 137
'ZDHHC21 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.327 (Fisher's exact test), Q value = 0.66

Table S19279.  Gene #1833: 'ZDHHC21 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ZDHHC21 MUTATED 1 3 0
ZDHHC21 WILD-TYPE 181 130 72
'ZDHHC21 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.264 (Fisher's exact test), Q value = 0.59

Table S19280.  Gene #1833: 'ZDHHC21 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ZDHHC21 MUTATED 0 0 2 3
ZDHHC21 WILD-TYPE 112 96 90 183
'ZDHHC21 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.273 (Fisher's exact test), Q value = 0.6

Table S19281.  Gene #1833: 'ZDHHC21 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ZDHHC21 MUTATED 1 0 2 0 0 2 0
ZDHHC21 WILD-TYPE 59 50 47 40 63 123 99
'ZDHHC21 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.471 (Fisher's exact test), Q value = 0.8

Table S19282.  Gene #1833: 'ZDHHC21 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ZDHHC21 MUTATED 0 1 1 3
ZDHHC21 WILD-TYPE 130 77 67 193
'ZDHHC21 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.846 (Fisher's exact test), Q value = 1

Table S19283.  Gene #1833: 'ZDHHC21 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ZDHHC21 MUTATED 0 0 0 2 2 0 0 0 1
ZDHHC21 WILD-TYPE 40 62 28 78 67 48 43 28 73
'SOX6 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0225 (Fisher's exact test), Q value = 0.15

Table S19284.  Gene #1834: 'SOX6 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
SOX6 MUTATED 2 0 0 3
SOX6 WILD-TYPE 44 58 64 40

Figure S4736.  Get High-res Image Gene #1834: 'SOX6 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'SOX6 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S19285.  Gene #1834: 'SOX6 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
SOX6 MUTATED 1 2 2
SOX6 WILD-TYPE 50 81 75
'SOX6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00143 (Fisher's exact test), Q value = 0.031

Table S19286.  Gene #1834: 'SOX6 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
SOX6 MUTATED 13 2 0 1
SOX6 WILD-TYPE 165 181 101 19

Figure S4737.  Get High-res Image Gene #1834: 'SOX6 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'SOX6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.851 (Fisher's exact test), Q value = 1

Table S19287.  Gene #1834: 'SOX6 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
SOX6 MUTATED 4 2 4
SOX6 WILD-TYPE 83 78 96
'SOX6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.424 (Fisher's exact test), Q value = 0.75

Table S19288.  Gene #1834: 'SOX6 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
SOX6 MUTATED 2 3 6
SOX6 WILD-TYPE 87 157 132
'SOX6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.179 (Fisher's exact test), Q value = 0.48

Table S19289.  Gene #1834: 'SOX6 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
SOX6 MUTATED 8 3 0
SOX6 WILD-TYPE 174 130 72
'SOX6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.297 (Fisher's exact test), Q value = 0.63

Table S19290.  Gene #1834: 'SOX6 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
SOX6 MUTATED 2 3 6 5
SOX6 WILD-TYPE 110 93 86 181
'SOX6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0149 (Fisher's exact test), Q value = 0.12

Table S19291.  Gene #1834: 'SOX6 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
SOX6 MUTATED 3 2 6 0 1 1 3
SOX6 WILD-TYPE 57 48 43 40 62 124 96

Figure S4738.  Get High-res Image Gene #1834: 'SOX6 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'SOX6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.24 (Fisher's exact test), Q value = 0.56

Table S19292.  Gene #1834: 'SOX6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
SOX6 MUTATED 7 3 0 6
SOX6 WILD-TYPE 123 75 68 190
'SOX6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.275 (Fisher's exact test), Q value = 0.6

Table S19293.  Gene #1834: 'SOX6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
SOX6 MUTATED 2 4 2 1 2 2 0 2 1
SOX6 WILD-TYPE 38 58 26 79 67 46 43 26 73
'SOX6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0956 (Fisher's exact test), Q value = 0.34

Table S19294.  Gene #1834: 'SOX6 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
SOX6 MUTATED 2 0 0 2
SOX6 WILD-TYPE 31 31 27 17
'SOX6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.763 (Fisher's exact test), Q value = 1

Table S19295.  Gene #1834: 'SOX6 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
SOX6 MUTATED 3 0 0 1
SOX6 WILD-TYPE 51 10 24 21
'APBA1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.387 (Fisher's exact test), Q value = 0.71

Table S19296.  Gene #1835: 'APBA1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
APBA1 MUTATED 2 1 1 3
APBA1 WILD-TYPE 44 57 63 40
'APBA1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.548 (Fisher's exact test), Q value = 0.87

Table S19297.  Gene #1835: 'APBA1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
APBA1 MUTATED 3 2 2
APBA1 WILD-TYPE 48 81 75
'APBA1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0233 (Fisher's exact test), Q value = 0.16

Table S19298.  Gene #1835: 'APBA1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
APBA1 MUTATED 11 2 1 0
APBA1 WILD-TYPE 167 181 100 20

Figure S4739.  Get High-res Image Gene #1835: 'APBA1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'APBA1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.129 (Fisher's exact test), Q value = 0.4

Table S19299.  Gene #1835: 'APBA1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
APBA1 MUTATED 1 1 6
APBA1 WILD-TYPE 86 79 94
'APBA1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.42 (Fisher's exact test), Q value = 0.75

Table S19300.  Gene #1835: 'APBA1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
APBA1 MUTATED 4 3 3
APBA1 WILD-TYPE 85 157 135
'APBA1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0918 (Fisher's exact test), Q value = 0.33

Table S19301.  Gene #1835: 'APBA1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
APBA1 MUTATED 5 1 4
APBA1 WILD-TYPE 177 132 68
'APBA1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.188 (Fisher's exact test), Q value = 0.49

Table S19302.  Gene #1835: 'APBA1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
APBA1 MUTATED 1 5 1 7
APBA1 WILD-TYPE 111 91 91 179
'APBA1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.584 (Fisher's exact test), Q value = 0.89

Table S19303.  Gene #1835: 'APBA1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
APBA1 MUTATED 1 1 4 1 1 3 3
APBA1 WILD-TYPE 59 49 45 39 62 122 96
'APBA1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.115 (Fisher's exact test), Q value = 0.38

Table S19304.  Gene #1835: 'APBA1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
APBA1 MUTATED 3 0 1 10
APBA1 WILD-TYPE 127 78 67 186
'APBA1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.57 (Fisher's exact test), Q value = 0.88

Table S19305.  Gene #1835: 'APBA1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
APBA1 MUTATED 1 2 0 3 5 0 1 1 1
APBA1 WILD-TYPE 39 60 28 77 64 48 42 27 73
'APBA1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.783 (Fisher's exact test), Q value = 1

Table S19306.  Gene #1835: 'APBA1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
APBA1 MUTATED 1 0 1 1
APBA1 WILD-TYPE 32 31 26 18
'APBA1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.112 (Fisher's exact test), Q value = 0.37

Table S19307.  Gene #1835: 'APBA1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
APBA1 MUTATED 0 0 1 2
APBA1 WILD-TYPE 54 10 23 20
'RREB1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.121 (Fisher's exact test), Q value = 0.39

Table S19308.  Gene #1836: 'RREB1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
RREB1 MUTATED 2 0 0 1
RREB1 WILD-TYPE 44 58 64 42
'RREB1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.185 (Fisher's exact test), Q value = 0.49

Table S19309.  Gene #1836: 'RREB1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
RREB1 MUTATED 2 0 1
RREB1 WILD-TYPE 49 83 76
'RREB1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.349 (Fisher's exact test), Q value = 0.68

Table S19310.  Gene #1836: 'RREB1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
RREB1 MUTATED 7 3 2 1
RREB1 WILD-TYPE 171 180 99 19
'RREB1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.919 (Fisher's exact test), Q value = 1

Table S19311.  Gene #1836: 'RREB1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
RREB1 MUTATED 4 3 3
RREB1 WILD-TYPE 83 77 97
'RREB1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.183 (Fisher's exact test), Q value = 0.48

Table S19312.  Gene #1836: 'RREB1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
RREB1 MUTATED 0 6 5
RREB1 WILD-TYPE 89 154 133
'RREB1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S19313.  Gene #1836: 'RREB1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
RREB1 MUTATED 5 4 2
RREB1 WILD-TYPE 177 129 70
'RREB1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.547 (Fisher's exact test), Q value = 0.87

Table S19314.  Gene #1836: 'RREB1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
RREB1 MUTATED 3 3 4 3
RREB1 WILD-TYPE 109 93 88 183
'RREB1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0127 (Fisher's exact test), Q value = 0.11

Table S19315.  Gene #1836: 'RREB1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
RREB1 MUTATED 2 2 5 1 1 0 2
RREB1 WILD-TYPE 58 48 44 39 62 125 97

Figure S4740.  Get High-res Image Gene #1836: 'RREB1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'RREB1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.265 (Fisher's exact test), Q value = 0.59

Table S19316.  Gene #1836: 'RREB1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
RREB1 MUTATED 7 1 1 4
RREB1 WILD-TYPE 123 77 67 192
'RREB1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.483 (Fisher's exact test), Q value = 0.81

Table S19317.  Gene #1836: 'RREB1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
RREB1 MUTATED 1 3 1 1 4 0 2 0 1
RREB1 WILD-TYPE 39 59 27 79 65 48 41 28 73
'RREB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.781 (Fisher's exact test), Q value = 1

Table S19318.  Gene #1836: 'RREB1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
RREB1 MUTATED 1 0 1 1
RREB1 WILD-TYPE 32 31 26 18
'RREB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.38 (Fisher's exact test), Q value = 0.71

Table S19319.  Gene #1836: 'RREB1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
RREB1 MUTATED 2 1 0 0
RREB1 WILD-TYPE 52 9 24 22
'KIAA0355 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.547 (Fisher's exact test), Q value = 0.87

Table S19320.  Gene #1837: 'KIAA0355 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
KIAA0355 MUTATED 4 3 0 0
KIAA0355 WILD-TYPE 174 180 101 20
'KIAA0355 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.592 (Fisher's exact test), Q value = 0.9

Table S19321.  Gene #1837: 'KIAA0355 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
KIAA0355 MUTATED 1 3 2
KIAA0355 WILD-TYPE 86 77 98
'KIAA0355 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0156 (Fisher's exact test), Q value = 0.12

Table S19322.  Gene #1837: 'KIAA0355 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
KIAA0355 MUTATED 4 0 2
KIAA0355 WILD-TYPE 85 160 136

Figure S4741.  Get High-res Image Gene #1837: 'KIAA0355 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'KIAA0355 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0676 (Fisher's exact test), Q value = 0.28

Table S19323.  Gene #1837: 'KIAA0355 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
KIAA0355 MUTATED 3 0 3
KIAA0355 WILD-TYPE 179 133 69
'KIAA0355 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.297 (Fisher's exact test), Q value = 0.63

Table S19324.  Gene #1837: 'KIAA0355 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
KIAA0355 MUTATED 2 3 1 1
KIAA0355 WILD-TYPE 110 93 91 185
'KIAA0355 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.126 (Fisher's exact test), Q value = 0.39

Table S19325.  Gene #1837: 'KIAA0355 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
KIAA0355 MUTATED 0 2 1 1 2 0 1
KIAA0355 WILD-TYPE 60 48 48 39 61 125 98
'KIAA0355 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.336 (Fisher's exact test), Q value = 0.66

Table S19326.  Gene #1837: 'KIAA0355 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
KIAA0355 MUTATED 3 2 1 1
KIAA0355 WILD-TYPE 127 76 67 195
'KIAA0355 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0575 (Fisher's exact test), Q value = 0.26

Table S19327.  Gene #1837: 'KIAA0355 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
KIAA0355 MUTATED 3 2 0 0 1 0 1 0 0
KIAA0355 WILD-TYPE 37 60 28 80 68 48 42 28 74
'PTPN13 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.446 (Fisher's exact test), Q value = 0.77

Table S19328.  Gene #1838: 'PTPN13 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
PTPN13 MUTATED 1 1 1 3
PTPN13 WILD-TYPE 45 57 63 40
'PTPN13 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.657 (Fisher's exact test), Q value = 0.94

Table S19329.  Gene #1838: 'PTPN13 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
PTPN13 MUTATED 2 3 1
PTPN13 WILD-TYPE 49 80 76
'PTPN13 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00094 (Fisher's exact test), Q value = 0.023

Table S19330.  Gene #1838: 'PTPN13 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
PTPN13 MUTATED 19 3 3 0
PTPN13 WILD-TYPE 159 180 98 20

Figure S4742.  Get High-res Image Gene #1838: 'PTPN13 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'PTPN13 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0443 (Fisher's exact test), Q value = 0.22

Table S19331.  Gene #1838: 'PTPN13 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
PTPN13 MUTATED 8 1 9
PTPN13 WILD-TYPE 79 79 91

Figure S4743.  Get High-res Image Gene #1838: 'PTPN13 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'PTPN13 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.566 (Fisher's exact test), Q value = 0.87

Table S19332.  Gene #1838: 'PTPN13 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
PTPN13 MUTATED 5 7 10
PTPN13 WILD-TYPE 84 153 128
'PTPN13 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.742 (Fisher's exact test), Q value = 1

Table S19333.  Gene #1838: 'PTPN13 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
PTPN13 MUTATED 9 8 5
PTPN13 WILD-TYPE 173 125 67
'PTPN13 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0457 (Fisher's exact test), Q value = 0.23

Table S19334.  Gene #1838: 'PTPN13 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
PTPN13 MUTATED 3 10 6 6
PTPN13 WILD-TYPE 109 86 86 180

Figure S4744.  Get High-res Image Gene #1838: 'PTPN13 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'PTPN13 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00798 (Fisher's exact test), Q value = 0.084

Table S19335.  Gene #1838: 'PTPN13 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
PTPN13 MUTATED 2 3 8 4 2 2 4
PTPN13 WILD-TYPE 58 47 41 36 61 123 95

Figure S4745.  Get High-res Image Gene #1838: 'PTPN13 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'PTPN13 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.681 (Fisher's exact test), Q value = 0.96

Table S19336.  Gene #1838: 'PTPN13 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
PTPN13 MUTATED 9 3 2 10
PTPN13 WILD-TYPE 121 75 66 186
'PTPN13 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.272 (Fisher's exact test), Q value = 0.6

Table S19337.  Gene #1838: 'PTPN13 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
PTPN13 MUTATED 3 3 3 1 7 2 1 1 3
PTPN13 WILD-TYPE 37 59 25 79 62 46 42 27 71
'PTPN13 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.358 (Fisher's exact test), Q value = 0.69

Table S19338.  Gene #1838: 'PTPN13 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
PTPN13 MUTATED 1 0 2 0
PTPN13 WILD-TYPE 32 31 25 19
'PTPN13 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0271 (Fisher's exact test), Q value = 0.17

Table S19339.  Gene #1838: 'PTPN13 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
PTPN13 MUTATED 0 0 3 0
PTPN13 WILD-TYPE 54 10 21 22

Figure S4746.  Get High-res Image Gene #1838: 'PTPN13 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

'TNKS2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00382 (Fisher's exact test), Q value = 0.056

Table S19340.  Gene #1839: 'TNKS2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
TNKS2 MUTATED 3 0 0 4
TNKS2 WILD-TYPE 43 58 64 39

Figure S4747.  Get High-res Image Gene #1839: 'TNKS2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'TNKS2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.121 (Fisher's exact test), Q value = 0.39

Table S19341.  Gene #1839: 'TNKS2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
TNKS2 MUTATED 4 2 1
TNKS2 WILD-TYPE 47 81 76
'TNKS2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0315 (Fisher's exact test), Q value = 0.18

Table S19342.  Gene #1839: 'TNKS2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
TNKS2 MUTATED 15 4 3 0
TNKS2 WILD-TYPE 163 179 98 20

Figure S4748.  Get High-res Image Gene #1839: 'TNKS2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'TNKS2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.172 (Fisher's exact test), Q value = 0.47

Table S19343.  Gene #1839: 'TNKS2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
TNKS2 MUTATED 8 2 5
TNKS2 WILD-TYPE 79 78 95
'TNKS2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.171 (Fisher's exact test), Q value = 0.47

Table S19344.  Gene #1839: 'TNKS2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
TNKS2 MUTATED 1 9 8
TNKS2 WILD-TYPE 88 151 130
'TNKS2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.368 (Fisher's exact test), Q value = 0.7

Table S19345.  Gene #1839: 'TNKS2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
TNKS2 MUTATED 10 7 1
TNKS2 WILD-TYPE 172 126 71
'TNKS2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.891 (Fisher's exact test), Q value = 1

Table S19346.  Gene #1839: 'TNKS2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
TNKS2 MUTATED 4 5 5 8
TNKS2 WILD-TYPE 108 91 87 178
'TNKS2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0766 (Fisher's exact test), Q value = 0.3

Table S19347.  Gene #1839: 'TNKS2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
TNKS2 MUTATED 5 2 6 0 2 3 4
TNKS2 WILD-TYPE 55 48 43 40 61 122 95
'TNKS2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.953 (Fisher's exact test), Q value = 1

Table S19348.  Gene #1839: 'TNKS2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
TNKS2 MUTATED 6 4 2 9
TNKS2 WILD-TYPE 124 74 66 187
'TNKS2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.252 (Fisher's exact test), Q value = 0.58

Table S19349.  Gene #1839: 'TNKS2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
TNKS2 MUTATED 2 4 2 3 6 1 2 1 0
TNKS2 WILD-TYPE 38 58 26 77 63 47 41 27 74
'TNKS2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.46 (Fisher's exact test), Q value = 0.79

Table S19350.  Gene #1839: 'TNKS2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
TNKS2 MUTATED 1 0 2 1
TNKS2 WILD-TYPE 32 31 25 18
'TNKS2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.129 (Fisher's exact test), Q value = 0.4

Table S19351.  Gene #1839: 'TNKS2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
TNKS2 MUTATED 1 0 3 0
TNKS2 WILD-TYPE 53 10 21 22
'XPO4 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0754 (Fisher's exact test), Q value = 0.3

Table S19352.  Gene #1840: 'XPO4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
XPO4 MUTATED 2 0 0 2
XPO4 WILD-TYPE 44 58 64 41
'XPO4 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S19353.  Gene #1840: 'XPO4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
XPO4 MUTATED 1 2 1
XPO4 WILD-TYPE 50 81 76
'XPO4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00125 (Fisher's exact test), Q value = 0.029

Table S19354.  Gene #1840: 'XPO4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
XPO4 MUTATED 15 1 4 0
XPO4 WILD-TYPE 163 182 97 20

Figure S4749.  Get High-res Image Gene #1840: 'XPO4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'XPO4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0707 (Fisher's exact test), Q value = 0.29

Table S19355.  Gene #1840: 'XPO4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
XPO4 MUTATED 5 1 9
XPO4 WILD-TYPE 82 79 91
'XPO4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.689 (Fisher's exact test), Q value = 0.97

Table S19356.  Gene #1840: 'XPO4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
XPO4 MUTATED 2 7 5
XPO4 WILD-TYPE 87 153 133
'XPO4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.158 (Fisher's exact test), Q value = 0.45

Table S19357.  Gene #1840: 'XPO4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
XPO4 MUTATED 8 6 0
XPO4 WILD-TYPE 174 127 72
'XPO4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0998 (Fisher's exact test), Q value = 0.35

Table S19358.  Gene #1840: 'XPO4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
XPO4 MUTATED 2 7 6 5
XPO4 WILD-TYPE 110 89 86 181
'XPO4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0363 (Fisher's exact test), Q value = 0.2

Table S19359.  Gene #1840: 'XPO4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
XPO4 MUTATED 3 3 6 1 3 1 3
XPO4 WILD-TYPE 57 47 43 39 60 124 96

Figure S4750.  Get High-res Image Gene #1840: 'XPO4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'XPO4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.24 (Fisher's exact test), Q value = 0.56

Table S19360.  Gene #1840: 'XPO4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
XPO4 MUTATED 9 4 1 6
XPO4 WILD-TYPE 121 74 67 190
'XPO4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.27 (Fisher's exact test), Q value = 0.59

Table S19361.  Gene #1840: 'XPO4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
XPO4 MUTATED 2 6 2 3 4 1 0 1 1
XPO4 WILD-TYPE 38 56 26 77 65 47 43 27 73
'XPO4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.359 (Fisher's exact test), Q value = 0.69

Table S19362.  Gene #1840: 'XPO4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
XPO4 MUTATED 1 1 0 2
XPO4 WILD-TYPE 32 30 27 17
'XPO4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.603 (Fisher's exact test), Q value = 0.91

Table S19363.  Gene #1840: 'XPO4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
XPO4 MUTATED 2 1 1 0
XPO4 WILD-TYPE 52 9 23 22
'AKNA MUTATION STATUS' versus 'MRNA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S19364.  Gene #1841: 'AKNA MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
AKNA MUTATED 1 1 2 1
AKNA WILD-TYPE 45 57 62 42
'AKNA MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.178 (Fisher's exact test), Q value = 0.48

Table S19365.  Gene #1841: 'AKNA MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
AKNA MUTATED 0 1 4
AKNA WILD-TYPE 51 82 73
'AKNA MUTATION STATUS' versus 'CN_CNMF'

P value = 0.133 (Fisher's exact test), Q value = 0.41

Table S19366.  Gene #1841: 'AKNA MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
AKNA MUTATED 8 4 0 0
AKNA WILD-TYPE 170 179 101 20
'AKNA MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.179 (Fisher's exact test), Q value = 0.48

Table S19367.  Gene #1841: 'AKNA MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
AKNA MUTATED 4 0 3
AKNA WILD-TYPE 83 80 97
'AKNA MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.66 (Fisher's exact test), Q value = 0.95

Table S19368.  Gene #1841: 'AKNA MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
AKNA MUTATED 2 3 5
AKNA WILD-TYPE 87 157 133
'AKNA MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.763 (Fisher's exact test), Q value = 1

Table S19369.  Gene #1841: 'AKNA MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
AKNA MUTATED 6 3 1
AKNA WILD-TYPE 176 130 71
'AKNA MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.954 (Fisher's exact test), Q value = 1

Table S19370.  Gene #1841: 'AKNA MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
AKNA MUTATED 2 3 2 5
AKNA WILD-TYPE 110 93 90 181
'AKNA MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.477 (Fisher's exact test), Q value = 0.81

Table S19371.  Gene #1841: 'AKNA MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
AKNA MUTATED 2 0 3 1 2 3 1
AKNA WILD-TYPE 58 50 46 39 61 122 98
'AKNA MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.898 (Fisher's exact test), Q value = 1

Table S19372.  Gene #1841: 'AKNA MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
AKNA MUTATED 4 2 1 4
AKNA WILD-TYPE 126 76 67 192
'AKNA MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.403 (Fisher's exact test), Q value = 0.73

Table S19373.  Gene #1841: 'AKNA MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
AKNA MUTATED 1 2 0 2 1 2 3 0 0
AKNA WILD-TYPE 39 60 28 78 68 46 40 28 74
'AKNA MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.627 (Fisher's exact test), Q value = 0.92

Table S19374.  Gene #1841: 'AKNA MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
AKNA MUTATED 0 1 1 1
AKNA WILD-TYPE 33 30 26 18
'AKNA MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.696 (Fisher's exact test), Q value = 0.97

Table S19375.  Gene #1841: 'AKNA MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
AKNA MUTATED 1 0 1 1
AKNA WILD-TYPE 53 10 23 21
'TRIM36 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0607 (Fisher's exact test), Q value = 0.27

Table S19376.  Gene #1842: 'TRIM36 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
TRIM36 MUTATED 3 1 0 0
TRIM36 WILD-TYPE 43 57 64 43
'TRIM36 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.23 (Fisher's exact test), Q value = 0.55

Table S19377.  Gene #1842: 'TRIM36 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
TRIM36 MUTATED 2 2 0
TRIM36 WILD-TYPE 49 81 77
'TRIM36 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.918 (Fisher's exact test), Q value = 1

Table S19378.  Gene #1842: 'TRIM36 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
TRIM36 MUTATED 7 5 3 0
TRIM36 WILD-TYPE 171 178 98 20
'TRIM36 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.149 (Fisher's exact test), Q value = 0.43

Table S19379.  Gene #1842: 'TRIM36 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
TRIM36 MUTATED 3 1 7
TRIM36 WILD-TYPE 84 79 93
'TRIM36 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.391 (Fisher's exact test), Q value = 0.72

Table S19380.  Gene #1842: 'TRIM36 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
TRIM36 MUTATED 1 4 6
TRIM36 WILD-TYPE 88 156 132
'TRIM36 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.366 (Fisher's exact test), Q value = 0.69

Table S19381.  Gene #1842: 'TRIM36 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
TRIM36 MUTATED 4 3 4
TRIM36 WILD-TYPE 178 130 68
'TRIM36 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0269 (Fisher's exact test), Q value = 0.17

Table S19382.  Gene #1842: 'TRIM36 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
TRIM36 MUTATED 2 8 1 4
TRIM36 WILD-TYPE 110 88 91 182

Figure S4751.  Get High-res Image Gene #1842: 'TRIM36 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'TRIM36 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.102 (Fisher's exact test), Q value = 0.35

Table S19383.  Gene #1842: 'TRIM36 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
TRIM36 MUTATED 2 4 3 2 0 2 2
TRIM36 WILD-TYPE 58 46 46 38 63 123 97
'TRIM36 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.11 (Fisher's exact test), Q value = 0.37

Table S19384.  Gene #1842: 'TRIM36 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
TRIM36 MUTATED 6 0 4 5
TRIM36 WILD-TYPE 124 78 64 191
'TRIM36 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0178 (Fisher's exact test), Q value = 0.13

Table S19385.  Gene #1842: 'TRIM36 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
TRIM36 MUTATED 2 0 0 3 4 1 5 0 0
TRIM36 WILD-TYPE 38 62 28 77 65 47 38 28 74

Figure S4752.  Get High-res Image Gene #1842: 'TRIM36 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'TRIM36 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.18 (Fisher's exact test), Q value = 0.48

Table S19386.  Gene #1842: 'TRIM36 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
TRIM36 MUTATED 1 0 3 1
TRIM36 WILD-TYPE 32 31 24 18
'TRIM36 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.168 (Fisher's exact test), Q value = 0.46

Table S19387.  Gene #1842: 'TRIM36 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
TRIM36 MUTATED 1 0 3 1
TRIM36 WILD-TYPE 53 10 21 21
'DIAPH3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.23 (Fisher's exact test), Q value = 0.55

Table S19388.  Gene #1843: 'DIAPH3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
DIAPH3 MUTATED 2 1 0 0
DIAPH3 WILD-TYPE 44 57 64 43
'DIAPH3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.464 (Fisher's exact test), Q value = 0.79

Table S19389.  Gene #1843: 'DIAPH3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
DIAPH3 MUTATED 1 2 0
DIAPH3 WILD-TYPE 50 81 77
'DIAPH3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0275 (Fisher's exact test), Q value = 0.17

Table S19390.  Gene #1843: 'DIAPH3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
DIAPH3 MUTATED 10 2 4 2
DIAPH3 WILD-TYPE 168 181 97 18

Figure S4753.  Get High-res Image Gene #1843: 'DIAPH3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'DIAPH3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.103 (Fisher's exact test), Q value = 0.35

Table S19391.  Gene #1843: 'DIAPH3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
DIAPH3 MUTATED 6 1 8
DIAPH3 WILD-TYPE 81 79 92
'DIAPH3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.171 (Fisher's exact test), Q value = 0.47

Table S19392.  Gene #1843: 'DIAPH3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
DIAPH3 MUTATED 2 2 7
DIAPH3 WILD-TYPE 87 158 131
'DIAPH3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.558 (Fisher's exact test), Q value = 0.87

Table S19393.  Gene #1843: 'DIAPH3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
DIAPH3 MUTATED 7 3 1
DIAPH3 WILD-TYPE 175 130 71
'DIAPH3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0212 (Fisher's exact test), Q value = 0.15

Table S19394.  Gene #1843: 'DIAPH3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
DIAPH3 MUTATED 2 8 5 3
DIAPH3 WILD-TYPE 110 88 87 183

Figure S4754.  Get High-res Image Gene #1843: 'DIAPH3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'DIAPH3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0697 (Fisher's exact test), Q value = 0.28

Table S19395.  Gene #1843: 'DIAPH3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
DIAPH3 MUTATED 2 4 4 1 4 2 1
DIAPH3 WILD-TYPE 58 46 45 39 59 123 98
'DIAPH3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.225 (Fisher's exact test), Q value = 0.54

Table S19396.  Gene #1843: 'DIAPH3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
DIAPH3 MUTATED 7 5 2 4
DIAPH3 WILD-TYPE 123 73 66 192
'DIAPH3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.766 (Fisher's exact test), Q value = 1

Table S19397.  Gene #1843: 'DIAPH3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
DIAPH3 MUTATED 2 4 1 4 4 1 1 0 1
DIAPH3 WILD-TYPE 38 58 27 76 65 47 42 28 73
'DIAPH3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.758 (Fisher's exact test), Q value = 1

Table S19398.  Gene #1843: 'DIAPH3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
DIAPH3 MUTATED 1 1 2 0
DIAPH3 WILD-TYPE 32 30 25 19
'DIAPH3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.674 (Fisher's exact test), Q value = 0.96

Table S19399.  Gene #1843: 'DIAPH3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
DIAPH3 MUTATED 2 0 2 0
DIAPH3 WILD-TYPE 52 10 22 22
'KDR MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00386 (Fisher's exact test), Q value = 0.056

Table S19400.  Gene #1844: 'KDR MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
KDR MUTATED 3 0 0 4
KDR WILD-TYPE 43 58 64 39

Figure S4755.  Get High-res Image Gene #1844: 'KDR MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'KDR MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.126 (Fisher's exact test), Q value = 0.39

Table S19401.  Gene #1844: 'KDR MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
KDR MUTATED 4 2 1
KDR WILD-TYPE 47 81 76
'KDR MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00021 (Fisher's exact test), Q value = 0.0086

Table S19402.  Gene #1844: 'KDR MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
KDR MUTATED 23 5 2 2
KDR WILD-TYPE 155 178 99 18

Figure S4756.  Get High-res Image Gene #1844: 'KDR MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'KDR MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.857 (Fisher's exact test), Q value = 1

Table S19403.  Gene #1844: 'KDR MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
KDR MUTATED 7 6 10
KDR WILD-TYPE 80 74 90
'KDR MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0541 (Fisher's exact test), Q value = 0.25

Table S19404.  Gene #1844: 'KDR MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
KDR MUTATED 2 16 8
KDR WILD-TYPE 87 144 130
'KDR MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.123 (Fisher's exact test), Q value = 0.39

Table S19405.  Gene #1844: 'KDR MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
KDR MUTATED 9 14 3
KDR WILD-TYPE 173 119 69
'KDR MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.399 (Fisher's exact test), Q value = 0.72

Table S19406.  Gene #1844: 'KDR MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
KDR MUTATED 9 8 7 8
KDR WILD-TYPE 103 88 85 178
'KDR MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00509 (Fisher's exact test), Q value = 0.064

Table S19407.  Gene #1844: 'KDR MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
KDR MUTATED 8 3 6 4 3 1 7
KDR WILD-TYPE 52 47 43 36 60 124 92

Figure S4757.  Get High-res Image Gene #1844: 'KDR MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'KDR MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.347 (Fisher's exact test), Q value = 0.67

Table S19408.  Gene #1844: 'KDR MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
KDR MUTATED 12 6 2 11
KDR WILD-TYPE 118 72 66 185
'KDR MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.34 (Fisher's exact test), Q value = 0.67

Table S19409.  Gene #1844: 'KDR MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
KDR MUTATED 5 4 1 4 7 4 3 2 1
KDR WILD-TYPE 35 58 27 76 62 44 40 26 73
'KDR MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0582 (Fisher's exact test), Q value = 0.26

Table S19410.  Gene #1844: 'KDR MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
KDR MUTATED 0 1 2 3
KDR WILD-TYPE 33 30 25 16
'KDR MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.922 (Fisher's exact test), Q value = 1

Table S19411.  Gene #1844: 'KDR MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
KDR MUTATED 3 0 2 1
KDR WILD-TYPE 51 10 22 21
'STK40 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.016 (Fisher's exact test), Q value = 0.13

Table S19412.  Gene #1845: 'STK40 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
STK40 MUTATED 1 0 0 3
STK40 WILD-TYPE 45 58 64 40

Figure S4758.  Get High-res Image Gene #1845: 'STK40 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'STK40 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0395 (Fisher's exact test), Q value = 0.21

Table S19413.  Gene #1845: 'STK40 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
STK40 MUTATED 3 0 1
STK40 WILD-TYPE 48 83 76

Figure S4759.  Get High-res Image Gene #1845: 'STK40 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'STK40 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.234 (Fisher's exact test), Q value = 0.55

Table S19414.  Gene #1845: 'STK40 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
STK40 MUTATED 6 1 2 0
STK40 WILD-TYPE 172 182 99 20
'STK40 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S19415.  Gene #1845: 'STK40 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
STK40 MUTATED 2 1 2
STK40 WILD-TYPE 85 79 98
'STK40 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.616 (Fisher's exact test), Q value = 0.91

Table S19416.  Gene #1845: 'STK40 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
STK40 MUTATED 1 2 4
STK40 WILD-TYPE 88 158 134
'STK40 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S19417.  Gene #1845: 'STK40 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
STK40 MUTATED 4 2 1
STK40 WILD-TYPE 178 131 71
'STK40 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.402 (Fisher's exact test), Q value = 0.73

Table S19418.  Gene #1845: 'STK40 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
STK40 MUTATED 1 4 1 3
STK40 WILD-TYPE 111 92 91 183
'STK40 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0219 (Fisher's exact test), Q value = 0.15

Table S19419.  Gene #1845: 'STK40 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
STK40 MUTATED 2 0 1 3 0 0 3
STK40 WILD-TYPE 58 50 48 37 63 125 96

Figure S4760.  Get High-res Image Gene #1845: 'STK40 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'STK40 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S19420.  Gene #1845: 'STK40 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
STK40 MUTATED 3 1 1 4
STK40 WILD-TYPE 127 77 67 192
'STK40 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.218 (Fisher's exact test), Q value = 0.53

Table S19421.  Gene #1845: 'STK40 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
STK40 MUTATED 2 1 0 0 3 1 1 1 0
STK40 WILD-TYPE 38 61 28 80 66 47 42 27 74
'STK40 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.626 (Fisher's exact test), Q value = 0.92

Table S19422.  Gene #1845: 'STK40 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
STK40 MUTATED 0 1 1 1
STK40 WILD-TYPE 33 30 26 18
'STK40 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.694 (Fisher's exact test), Q value = 0.97

Table S19423.  Gene #1845: 'STK40 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
STK40 MUTATED 1 0 1 1
STK40 WILD-TYPE 53 10 23 21
'XRCC6 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.063 (Fisher's exact test), Q value = 0.27

Table S19424.  Gene #1846: 'XRCC6 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
XRCC6 MUTATED 1 0 0 2
XRCC6 WILD-TYPE 45 58 64 41
'XRCC6 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S19425.  Gene #1846: 'XRCC6 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
XRCC6 MUTATED 1 1 1
XRCC6 WILD-TYPE 50 82 76
'XRCC6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0598 (Fisher's exact test), Q value = 0.27

Table S19426.  Gene #1846: 'XRCC6 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
XRCC6 MUTATED 7 1 0 0
XRCC6 WILD-TYPE 171 182 101 20
'XRCC6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.331 (Fisher's exact test), Q value = 0.66

Table S19427.  Gene #1846: 'XRCC6 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
XRCC6 MUTATED 3 0 2
XRCC6 WILD-TYPE 84 80 98
'XRCC6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.733 (Fisher's exact test), Q value = 1

Table S19428.  Gene #1846: 'XRCC6 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
XRCC6 MUTATED 1 3 4
XRCC6 WILD-TYPE 88 157 134
'XRCC6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.64 (Fisher's exact test), Q value = 0.93

Table S19429.  Gene #1846: 'XRCC6 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
XRCC6 MUTATED 3 4 1
XRCC6 WILD-TYPE 179 129 71
'XRCC6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.288 (Fisher's exact test), Q value = 0.62

Table S19430.  Gene #1846: 'XRCC6 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
XRCC6 MUTATED 0 3 2 3
XRCC6 WILD-TYPE 112 93 90 183
'XRCC6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0142 (Fisher's exact test), Q value = 0.12

Table S19431.  Gene #1846: 'XRCC6 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
XRCC6 MUTATED 1 1 4 0 0 0 2
XRCC6 WILD-TYPE 59 49 45 40 63 125 97

Figure S4761.  Get High-res Image Gene #1846: 'XRCC6 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'XRCC6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.377 (Fisher's exact test), Q value = 0.71

Table S19432.  Gene #1846: 'XRCC6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
XRCC6 MUTATED 2 3 0 3
XRCC6 WILD-TYPE 128 75 68 193
'XRCC6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0744 (Fisher's exact test), Q value = 0.29

Table S19433.  Gene #1846: 'XRCC6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
XRCC6 MUTATED 0 2 1 0 4 0 1 0 0
XRCC6 WILD-TYPE 40 60 27 80 65 48 42 28 74
'PHLDB2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0837 (Fisher's exact test), Q value = 0.31

Table S19434.  Gene #1847: 'PHLDB2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
PHLDB2 MUTATED 2 0 2 4
PHLDB2 WILD-TYPE 44 58 62 39
'PHLDB2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.597 (Fisher's exact test), Q value = 0.9

Table S19435.  Gene #1847: 'PHLDB2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
PHLDB2 MUTATED 3 3 2
PHLDB2 WILD-TYPE 48 80 75
'PHLDB2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.208 (Fisher's exact test), Q value = 0.52

Table S19436.  Gene #1847: 'PHLDB2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
PHLDB2 MUTATED 12 6 2 0
PHLDB2 WILD-TYPE 166 177 99 20
'PHLDB2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.102 (Fisher's exact test), Q value = 0.35

Table S19437.  Gene #1847: 'PHLDB2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
PHLDB2 MUTATED 7 1 4
PHLDB2 WILD-TYPE 80 79 96
'PHLDB2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.21 (Fisher's exact test), Q value = 0.52

Table S19438.  Gene #1847: 'PHLDB2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
PHLDB2 MUTATED 1 9 7
PHLDB2 WILD-TYPE 88 151 131
'PHLDB2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.721 (Fisher's exact test), Q value = 0.99

Table S19439.  Gene #1847: 'PHLDB2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
PHLDB2 MUTATED 8 7 2
PHLDB2 WILD-TYPE 174 126 70
'PHLDB2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.182 (Fisher's exact test), Q value = 0.48

Table S19440.  Gene #1847: 'PHLDB2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
PHLDB2 MUTATED 2 7 2 9
PHLDB2 WILD-TYPE 110 89 90 177
'PHLDB2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.652 (Fisher's exact test), Q value = 0.94

Table S19441.  Gene #1847: 'PHLDB2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
PHLDB2 MUTATED 2 3 4 1 1 4 5
PHLDB2 WILD-TYPE 58 47 45 39 62 121 94
'PHLDB2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0803 (Fisher's exact test), Q value = 0.31

Table S19442.  Gene #1847: 'PHLDB2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
PHLDB2 MUTATED 8 1 0 10
PHLDB2 WILD-TYPE 122 77 68 186
'PHLDB2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.536 (Fisher's exact test), Q value = 0.86

Table S19443.  Gene #1847: 'PHLDB2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
PHLDB2 MUTATED 3 2 2 2 5 1 0 1 3
PHLDB2 WILD-TYPE 37 60 26 78 64 47 43 27 71
'MRPL44 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0272 (Fisher's exact test), Q value = 0.17

Table S19444.  Gene #1848: 'MRPL44 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
MRPL44 MUTATED 3 0 0 2
MRPL44 WILD-TYPE 43 58 64 41

Figure S4762.  Get High-res Image Gene #1848: 'MRPL44 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'MRPL44 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0065 (Fisher's exact test), Q value = 0.074

Table S19445.  Gene #1848: 'MRPL44 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
MRPL44 MUTATED 4 0 1
MRPL44 WILD-TYPE 47 83 76

Figure S4763.  Get High-res Image Gene #1848: 'MRPL44 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'MRPL44 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00527 (Fisher's exact test), Q value = 0.065

Table S19446.  Gene #1848: 'MRPL44 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
MRPL44 MUTATED 8 0 1 1
MRPL44 WILD-TYPE 170 183 100 19

Figure S4764.  Get High-res Image Gene #1848: 'MRPL44 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'MRPL44 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S19447.  Gene #1848: 'MRPL44 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
MRPL44 MUTATED 2 1 2
MRPL44 WILD-TYPE 85 79 98
'MRPL44 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.697 (Fisher's exact test), Q value = 0.97

Table S19448.  Gene #1848: 'MRPL44 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
MRPL44 MUTATED 1 5 3
MRPL44 WILD-TYPE 88 155 135
'MRPL44 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.45 (Fisher's exact test), Q value = 0.78

Table S19449.  Gene #1848: 'MRPL44 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
MRPL44 MUTATED 3 3 3
MRPL44 WILD-TYPE 179 130 69
'MRPL44 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.17 (Fisher's exact test), Q value = 0.47

Table S19450.  Gene #1848: 'MRPL44 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
MRPL44 MUTATED 0 4 2 4
MRPL44 WILD-TYPE 112 92 90 182
'MRPL44 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0519 (Fisher's exact test), Q value = 0.25

Table S19451.  Gene #1848: 'MRPL44 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
MRPL44 MUTATED 1 1 3 1 0 0 4
MRPL44 WILD-TYPE 59 49 46 39 63 125 95
'MRPL44 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.241 (Fisher's exact test), Q value = 0.56

Table S19452.  Gene #1848: 'MRPL44 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
MRPL44 MUTATED 4 0 0 6
MRPL44 WILD-TYPE 126 78 68 190
'MRPL44 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0417 (Fisher's exact test), Q value = 0.22

Table S19453.  Gene #1848: 'MRPL44 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
MRPL44 MUTATED 1 1 0 0 6 0 1 0 1
MRPL44 WILD-TYPE 39 61 28 80 63 48 42 28 73

Figure S4765.  Get High-res Image Gene #1848: 'MRPL44 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'MRPL44 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00444 (Fisher's exact test), Q value = 0.061

Table S19454.  Gene #1848: 'MRPL44 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
MRPL44 MUTATED 0 0 0 3
MRPL44 WILD-TYPE 33 31 27 16

Figure S4766.  Get High-res Image Gene #1848: 'MRPL44 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'MRPL44 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S19455.  Gene #1848: 'MRPL44 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
MRPL44 MUTATED 2 0 1 0
MRPL44 WILD-TYPE 52 10 23 22
'IDI1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.122 (Fisher's exact test), Q value = 0.39

Table S19456.  Gene #1849: 'IDI1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
IDI1 MUTATED 4 0 0 0
IDI1 WILD-TYPE 174 183 101 20
'IDI1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.78 (Fisher's exact test), Q value = 1

Table S19457.  Gene #1849: 'IDI1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
IDI1 MUTATED 1 0 2
IDI1 WILD-TYPE 86 80 98
'IDI1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S19458.  Gene #1849: 'IDI1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
IDI1 MUTATED 1 1 1
IDI1 WILD-TYPE 88 159 137
'IDI1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S19459.  Gene #1849: 'IDI1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
IDI1 MUTATED 2 1 0
IDI1 WILD-TYPE 180 132 72
'IDI1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.305 (Fisher's exact test), Q value = 0.63

Table S19460.  Gene #1849: 'IDI1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
IDI1 MUTATED 0 2 1 1
IDI1 WILD-TYPE 112 94 91 185
'IDI1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.147 (Fisher's exact test), Q value = 0.43

Table S19461.  Gene #1849: 'IDI1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
IDI1 MUTATED 0 1 2 0 0 1 0
IDI1 WILD-TYPE 60 49 47 40 63 124 99
'IDI1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.302 (Fisher's exact test), Q value = 0.63

Table S19462.  Gene #1849: 'IDI1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
IDI1 MUTATED 3 0 0 1
IDI1 WILD-TYPE 127 78 68 195
'IDI1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.391 (Fisher's exact test), Q value = 0.72

Table S19463.  Gene #1849: 'IDI1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
IDI1 MUTATED 0 0 1 1 2 0 0 0 0
IDI1 WILD-TYPE 40 62 27 79 67 48 43 28 74
'SMOX MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0659 (Fisher's exact test), Q value = 0.28

Table S19464.  Gene #1850: 'SMOX MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
SMOX MUTATED 1 0 0 2
SMOX WILD-TYPE 45 58 64 41
'SMOX MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.182 (Fisher's exact test), Q value = 0.48

Table S19465.  Gene #1850: 'SMOX MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
SMOX MUTATED 2 0 1
SMOX WILD-TYPE 49 83 76
'SMOX MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0603 (Fisher's exact test), Q value = 0.27

Table S19466.  Gene #1850: 'SMOX MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
SMOX MUTATED 7 1 0 0
SMOX WILD-TYPE 171 182 101 20
'SMOX MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.738 (Fisher's exact test), Q value = 1

Table S19467.  Gene #1850: 'SMOX MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
SMOX MUTATED 2 2 1
SMOX WILD-TYPE 85 78 99
'SMOX MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.731 (Fisher's exact test), Q value = 1

Table S19468.  Gene #1850: 'SMOX MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
SMOX MUTATED 1 3 4
SMOX WILD-TYPE 88 157 134
'SMOX MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S19469.  Gene #1850: 'SMOX MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
SMOX MUTATED 4 3 1
SMOX WILD-TYPE 178 130 71
'SMOX MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.381 (Fisher's exact test), Q value = 0.71

Table S19470.  Gene #1850: 'SMOX MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
SMOX MUTATED 2 0 3 3
SMOX WILD-TYPE 110 96 89 183
'SMOX MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0661 (Fisher's exact test), Q value = 0.28

Table S19471.  Gene #1850: 'SMOX MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
SMOX MUTATED 2 0 3 0 1 0 2
SMOX WILD-TYPE 58 50 46 40 62 125 97
'SMOX MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.132 (Fisher's exact test), Q value = 0.41

Table S19472.  Gene #1850: 'SMOX MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
SMOX MUTATED 0 3 1 4
SMOX WILD-TYPE 130 75 67 192
'SMOX MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0488 (Fisher's exact test), Q value = 0.24

Table S19473.  Gene #1850: 'SMOX MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
SMOX MUTATED 0 3 0 0 4 0 1 0 0
SMOX WILD-TYPE 40 59 28 80 65 48 42 28 74

Figure S4767.  Get High-res Image Gene #1850: 'SMOX MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'CENPJ MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.071 (Fisher's exact test), Q value = 0.29

Table S19474.  Gene #1851: 'CENPJ MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
CENPJ MUTATED 3 0 1 3
CENPJ WILD-TYPE 43 58 63 40
'CENPJ MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.548 (Fisher's exact test), Q value = 0.87

Table S19475.  Gene #1851: 'CENPJ MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
CENPJ MUTATED 3 2 2
CENPJ WILD-TYPE 48 81 75
'CENPJ MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S19476.  Gene #1851: 'CENPJ MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
CENPJ MUTATED 20 1 1 0
CENPJ WILD-TYPE 158 182 100 20

Figure S4768.  Get High-res Image Gene #1851: 'CENPJ MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'CENPJ MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.452 (Fisher's exact test), Q value = 0.78

Table S19477.  Gene #1851: 'CENPJ MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
CENPJ MUTATED 6 2 6
CENPJ WILD-TYPE 81 78 94
'CENPJ MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0399 (Fisher's exact test), Q value = 0.21

Table S19478.  Gene #1851: 'CENPJ MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
CENPJ MUTATED 5 3 11
CENPJ WILD-TYPE 84 157 127

Figure S4769.  Get High-res Image Gene #1851: 'CENPJ MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'CENPJ MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.674 (Fisher's exact test), Q value = 0.96

Table S19479.  Gene #1851: 'CENPJ MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
CENPJ MUTATED 9 8 2
CENPJ WILD-TYPE 173 125 70
'CENPJ MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.17 (Fisher's exact test), Q value = 0.47

Table S19480.  Gene #1851: 'CENPJ MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
CENPJ MUTATED 2 7 6 7
CENPJ WILD-TYPE 110 89 86 179
'CENPJ MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0409 (Fisher's exact test), Q value = 0.21

Table S19481.  Gene #1851: 'CENPJ MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
CENPJ MUTATED 2 3 6 1 3 1 6
CENPJ WILD-TYPE 58 47 43 39 60 124 93

Figure S4770.  Get High-res Image Gene #1851: 'CENPJ MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CENPJ MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.105 (Fisher's exact test), Q value = 0.36

Table S19482.  Gene #1851: 'CENPJ MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
CENPJ MUTATED 7 6 0 8
CENPJ WILD-TYPE 123 72 68 188
'CENPJ MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.444 (Fisher's exact test), Q value = 0.77

Table S19483.  Gene #1851: 'CENPJ MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
CENPJ MUTATED 3 4 1 3 6 0 1 1 2
CENPJ WILD-TYPE 37 58 27 77 63 48 42 27 72
'CENPJ MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.189 (Fisher's exact test), Q value = 0.49

Table S19484.  Gene #1851: 'CENPJ MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
CENPJ MUTATED 2 2 0 3
CENPJ WILD-TYPE 31 29 27 16
'CENPJ MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.132 (Fisher's exact test), Q value = 0.41

Table S19485.  Gene #1851: 'CENPJ MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
CENPJ MUTATED 6 1 0 0
CENPJ WILD-TYPE 48 9 24 22
'DUSP16 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0979 (Fisher's exact test), Q value = 0.34

Table S19486.  Gene #1852: 'DUSP16 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
DUSP16 MUTATED 2 1 0 3
DUSP16 WILD-TYPE 44 57 64 40
'DUSP16 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0724 (Fisher's exact test), Q value = 0.29

Table S19487.  Gene #1852: 'DUSP16 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
DUSP16 MUTATED 4 1 1
DUSP16 WILD-TYPE 47 82 76
'DUSP16 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.168 (Fisher's exact test), Q value = 0.46

Table S19488.  Gene #1852: 'DUSP16 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
DUSP16 MUTATED 8 2 1 0
DUSP16 WILD-TYPE 170 181 100 20
'DUSP16 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0536 (Fisher's exact test), Q value = 0.25

Table S19489.  Gene #1852: 'DUSP16 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
DUSP16 MUTATED 0 1 5
DUSP16 WILD-TYPE 87 79 95
'DUSP16 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0411 (Fisher's exact test), Q value = 0.21

Table S19490.  Gene #1852: 'DUSP16 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
DUSP16 MUTATED 0 7 1
DUSP16 WILD-TYPE 89 153 137

Figure S4771.  Get High-res Image Gene #1852: 'DUSP16 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'DUSP16 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.255 (Fisher's exact test), Q value = 0.58

Table S19491.  Gene #1852: 'DUSP16 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
DUSP16 MUTATED 2 5 1
DUSP16 WILD-TYPE 180 128 71
'DUSP16 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.264 (Fisher's exact test), Q value = 0.59

Table S19492.  Gene #1852: 'DUSP16 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
DUSP16 MUTATED 2 4 0 5
DUSP16 WILD-TYPE 110 92 92 181
'DUSP16 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.244 (Fisher's exact test), Q value = 0.57

Table S19493.  Gene #1852: 'DUSP16 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
DUSP16 MUTATED 2 0 2 0 1 1 5
DUSP16 WILD-TYPE 58 50 47 40 62 124 94
'DUSP16 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.474 (Fisher's exact test), Q value = 0.8

Table S19494.  Gene #1852: 'DUSP16 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
DUSP16 MUTATED 3 1 0 7
DUSP16 WILD-TYPE 127 77 68 189
'DUSP16 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.119 (Fisher's exact test), Q value = 0.38

Table S19495.  Gene #1852: 'DUSP16 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
DUSP16 MUTATED 0 1 1 1 6 1 0 0 1
DUSP16 WILD-TYPE 40 61 27 79 63 47 43 28 73
'ZHX3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.111 (Fisher's exact test), Q value = 0.37

Table S19496.  Gene #1853: 'ZHX3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ZHX3 MUTATED 2 0 1 3
ZHX3 WILD-TYPE 44 58 63 40
'ZHX3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0719 (Fisher's exact test), Q value = 0.29

Table S19497.  Gene #1853: 'ZHX3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ZHX3 MUTATED 4 1 1
ZHX3 WILD-TYPE 47 82 76
'ZHX3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00616 (Fisher's exact test), Q value = 0.072

Table S19498.  Gene #1853: 'ZHX3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ZHX3 MUTATED 11 1 1 1
ZHX3 WILD-TYPE 167 182 100 19

Figure S4772.  Get High-res Image Gene #1853: 'ZHX3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ZHX3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.715 (Fisher's exact test), Q value = 0.99

Table S19499.  Gene #1853: 'ZHX3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ZHX3 MUTATED 3 1 3
ZHX3 WILD-TYPE 84 79 97
'ZHX3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S19500.  Gene #1853: 'ZHX3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ZHX3 MUTATED 2 5 4
ZHX3 WILD-TYPE 87 155 134
'ZHX3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.43 (Fisher's exact test), Q value = 0.76

Table S19501.  Gene #1853: 'ZHX3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ZHX3 MUTATED 4 6 1
ZHX3 WILD-TYPE 178 127 71
'ZHX3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.507 (Fisher's exact test), Q value = 0.83

Table S19502.  Gene #1853: 'ZHX3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ZHX3 MUTATED 1 3 3 7
ZHX3 WILD-TYPE 111 93 89 179
'ZHX3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.155 (Fisher's exact test), Q value = 0.44

Table S19503.  Gene #1853: 'ZHX3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ZHX3 MUTATED 2 1 3 0 1 1 6
ZHX3 WILD-TYPE 58 49 46 40 62 124 93
'ZHX3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.293 (Fisher's exact test), Q value = 0.62

Table S19504.  Gene #1853: 'ZHX3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ZHX3 MUTATED 5 1 0 8
ZHX3 WILD-TYPE 125 77 68 188
'ZHX3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0122 (Fisher's exact test), Q value = 0.11

Table S19505.  Gene #1853: 'ZHX3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ZHX3 MUTATED 0 2 2 0 6 0 0 2 2
ZHX3 WILD-TYPE 40 60 26 80 63 48 43 26 72

Figure S4773.  Get High-res Image Gene #1853: 'ZHX3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'ZHX3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.136 (Fisher's exact test), Q value = 0.41

Table S19506.  Gene #1853: 'ZHX3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
ZHX3 MUTATED 1 0 0 2
ZHX3 WILD-TYPE 32 31 27 17
'ZHX3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S19507.  Gene #1853: 'ZHX3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
ZHX3 MUTATED 2 0 1 0
ZHX3 WILD-TYPE 52 10 23 22
'PDK1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0604 (Fisher's exact test), Q value = 0.27

Table S19508.  Gene #1854: 'PDK1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
PDK1 MUTATED 6 0 1 0
PDK1 WILD-TYPE 172 183 100 20
'PDK1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.63 (Fisher's exact test), Q value = 0.93

Table S19509.  Gene #1854: 'PDK1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
PDK1 MUTATED 1 1 3
PDK1 WILD-TYPE 86 79 97
'PDK1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.582 (Fisher's exact test), Q value = 0.89

Table S19510.  Gene #1854: 'PDK1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
PDK1 MUTATED 1 4 1
PDK1 WILD-TYPE 88 156 137
'PDK1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.204 (Fisher's exact test), Q value = 0.51

Table S19511.  Gene #1854: 'PDK1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
PDK1 MUTATED 1 4 1
PDK1 WILD-TYPE 181 129 71
'PDK1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.611 (Fisher's exact test), Q value = 0.91

Table S19512.  Gene #1854: 'PDK1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
PDK1 MUTATED 1 3 1 2
PDK1 WILD-TYPE 111 93 91 184
'PDK1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.109 (Fisher's exact test), Q value = 0.36

Table S19513.  Gene #1854: 'PDK1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
PDK1 MUTATED 2 2 1 1 0 0 1
PDK1 WILD-TYPE 58 48 48 39 63 125 98
'PDK1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.902 (Fisher's exact test), Q value = 1

Table S19514.  Gene #1854: 'PDK1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
PDK1 MUTATED 2 1 0 4
PDK1 WILD-TYPE 128 77 68 192
'PDK1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.168 (Fisher's exact test), Q value = 0.46

Table S19515.  Gene #1854: 'PDK1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
PDK1 MUTATED 1 0 2 0 2 1 0 0 1
PDK1 WILD-TYPE 39 62 26 80 67 47 43 28 73
'EPHA5 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.127 (Fisher's exact test), Q value = 0.4

Table S19516.  Gene #1855: 'EPHA5 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
EPHA5 MUTATED 4 3 1 5
EPHA5 WILD-TYPE 42 55 63 38
'EPHA5 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.188 (Fisher's exact test), Q value = 0.49

Table S19517.  Gene #1855: 'EPHA5 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
EPHA5 MUTATED 6 4 3
EPHA5 WILD-TYPE 45 79 74
'EPHA5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0432 (Fisher's exact test), Q value = 0.22

Table S19518.  Gene #1855: 'EPHA5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
EPHA5 MUTATED 22 9 8 0
EPHA5 WILD-TYPE 156 174 93 20

Figure S4774.  Get High-res Image Gene #1855: 'EPHA5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'EPHA5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0161 (Fisher's exact test), Q value = 0.13

Table S19519.  Gene #1855: 'EPHA5 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
EPHA5 MUTATED 12 2 12
EPHA5 WILD-TYPE 75 78 88

Figure S4775.  Get High-res Image Gene #1855: 'EPHA5 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'EPHA5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.209 (Fisher's exact test), Q value = 0.52

Table S19520.  Gene #1855: 'EPHA5 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
EPHA5 MUTATED 5 13 17
EPHA5 WILD-TYPE 84 147 121
'EPHA5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.523 (Fisher's exact test), Q value = 0.84

Table S19521.  Gene #1855: 'EPHA5 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
EPHA5 MUTATED 17 14 4
EPHA5 WILD-TYPE 165 119 68
'EPHA5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.579 (Fisher's exact test), Q value = 0.88

Table S19522.  Gene #1855: 'EPHA5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
EPHA5 MUTATED 7 10 9 13
EPHA5 WILD-TYPE 105 86 83 173
'EPHA5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.029 (Fisher's exact test), Q value = 0.17

Table S19523.  Gene #1855: 'EPHA5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
EPHA5 MUTATED 7 4 7 1 6 3 11
EPHA5 WILD-TYPE 53 46 42 39 57 122 88

Figure S4776.  Get High-res Image Gene #1855: 'EPHA5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'EPHA5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.701 (Fisher's exact test), Q value = 0.97

Table S19524.  Gene #1855: 'EPHA5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
EPHA5 MUTATED 12 8 4 14
EPHA5 WILD-TYPE 118 70 64 182
'EPHA5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.335 (Fisher's exact test), Q value = 0.66

Table S19525.  Gene #1855: 'EPHA5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
EPHA5 MUTATED 3 6 1 5 12 3 3 1 4
EPHA5 WILD-TYPE 37 56 27 75 57 45 40 27 70
'EPHA5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S19526.  Gene #1855: 'EPHA5 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
EPHA5 MUTATED 3 3 2 2
EPHA5 WILD-TYPE 30 28 25 17
'EPHA5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.888 (Fisher's exact test), Q value = 1

Table S19527.  Gene #1855: 'EPHA5 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
EPHA5 MUTATED 5 0 3 2
EPHA5 WILD-TYPE 49 10 21 20
'SPAST MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0269 (Fisher's exact test), Q value = 0.17

Table S19528.  Gene #1856: 'SPAST MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
SPAST MUTATED 3 0 0 2
SPAST WILD-TYPE 43 58 64 41

Figure S4777.  Get High-res Image Gene #1856: 'SPAST MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'SPAST MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00656 (Fisher's exact test), Q value = 0.074

Table S19529.  Gene #1856: 'SPAST MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
SPAST MUTATED 4 0 1
SPAST WILD-TYPE 47 83 76

Figure S4778.  Get High-res Image Gene #1856: 'SPAST MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'SPAST MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0114 (Fisher's exact test), Q value = 0.1

Table S19530.  Gene #1856: 'SPAST MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
SPAST MUTATED 9 1 0 0
SPAST WILD-TYPE 169 182 101 20

Figure S4779.  Get High-res Image Gene #1856: 'SPAST MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'SPAST MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0557 (Fisher's exact test), Q value = 0.26

Table S19531.  Gene #1856: 'SPAST MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
SPAST MUTATED 4 1 0
SPAST WILD-TYPE 83 79 100
'SPAST MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.911 (Fisher's exact test), Q value = 1

Table S19532.  Gene #1856: 'SPAST MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
SPAST MUTATED 2 3 4
SPAST WILD-TYPE 87 157 134
'SPAST MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0961 (Fisher's exact test), Q value = 0.34

Table S19533.  Gene #1856: 'SPAST MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
SPAST MUTATED 2 3 4
SPAST WILD-TYPE 180 130 68
'SPAST MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.805 (Fisher's exact test), Q value = 1

Table S19534.  Gene #1856: 'SPAST MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
SPAST MUTATED 1 2 2 5
SPAST WILD-TYPE 111 94 90 181
'SPAST MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0836 (Fisher's exact test), Q value = 0.31

Table S19535.  Gene #1856: 'SPAST MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
SPAST MUTATED 1 1 3 0 1 0 4
SPAST WILD-TYPE 59 49 46 40 62 125 95
'SPAST MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.218 (Fisher's exact test), Q value = 0.53

Table S19536.  Gene #1856: 'SPAST MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
SPAST MUTATED 1 3 0 6
SPAST WILD-TYPE 129 75 68 190
'SPAST MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0117 (Fisher's exact test), Q value = 0.11

Table S19537.  Gene #1856: 'SPAST MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
SPAST MUTATED 0 3 0 0 6 0 0 0 1
SPAST WILD-TYPE 40 59 28 80 63 48 43 28 73

Figure S4780.  Get High-res Image Gene #1856: 'SPAST MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'SPAST MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0251 (Fisher's exact test), Q value = 0.16

Table S19538.  Gene #1856: 'SPAST MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
SPAST MUTATED 1 0 0 3
SPAST WILD-TYPE 32 31 27 16

Figure S4781.  Get High-res Image Gene #1856: 'SPAST MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'SPAST MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.871 (Fisher's exact test), Q value = 1

Table S19539.  Gene #1856: 'SPAST MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
SPAST MUTATED 3 0 1 0
SPAST WILD-TYPE 51 10 23 22
'SIN3A MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0231 (Fisher's exact test), Q value = 0.15

Table S19540.  Gene #1857: 'SIN3A MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
SIN3A MUTATED 2 0 0 3
SIN3A WILD-TYPE 44 58 64 40

Figure S4782.  Get High-res Image Gene #1857: 'SIN3A MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'SIN3A MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.639 (Fisher's exact test), Q value = 0.93

Table S19541.  Gene #1857: 'SIN3A MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
SIN3A MUTATED 2 1 2
SIN3A WILD-TYPE 49 82 75
'SIN3A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00022 (Fisher's exact test), Q value = 0.0088

Table S19542.  Gene #1857: 'SIN3A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
SIN3A MUTATED 17 3 0 0
SIN3A WILD-TYPE 161 180 101 20

Figure S4783.  Get High-res Image Gene #1857: 'SIN3A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'SIN3A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.714 (Fisher's exact test), Q value = 0.98

Table S19543.  Gene #1857: 'SIN3A MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
SIN3A MUTATED 6 3 6
SIN3A WILD-TYPE 81 77 94
'SIN3A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.469 (Fisher's exact test), Q value = 0.8

Table S19544.  Gene #1857: 'SIN3A MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
SIN3A MUTATED 2 9 8
SIN3A WILD-TYPE 87 151 130
'SIN3A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.707 (Fisher's exact test), Q value = 0.98

Table S19545.  Gene #1857: 'SIN3A MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
SIN3A MUTATED 11 5 3
SIN3A WILD-TYPE 171 128 69
'SIN3A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.595 (Fisher's exact test), Q value = 0.9

Table S19546.  Gene #1857: 'SIN3A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
SIN3A MUTATED 4 4 6 6
SIN3A WILD-TYPE 108 92 86 180
'SIN3A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00256 (Fisher's exact test), Q value = 0.044

Table S19547.  Gene #1857: 'SIN3A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
SIN3A MUTATED 3 2 7 1 2 0 5
SIN3A WILD-TYPE 57 48 42 39 61 125 94

Figure S4784.  Get High-res Image Gene #1857: 'SIN3A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'SIN3A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.24 (Fisher's exact test), Q value = 0.56

Table S19548.  Gene #1857: 'SIN3A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
SIN3A MUTATED 9 4 1 6
SIN3A WILD-TYPE 121 74 67 190
'SIN3A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0202 (Fisher's exact test), Q value = 0.14

Table S19549.  Gene #1857: 'SIN3A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
SIN3A MUTATED 1 4 3 0 7 2 2 0 1
SIN3A WILD-TYPE 39 58 25 80 62 46 41 28 73

Figure S4785.  Get High-res Image Gene #1857: 'SIN3A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'SIN3A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.353 (Fisher's exact test), Q value = 0.68

Table S19550.  Gene #1857: 'SIN3A MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
SIN3A MUTATED 2 1 1 3
SIN3A WILD-TYPE 31 30 26 16
'SIN3A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S19551.  Gene #1857: 'SIN3A MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
SIN3A MUTATED 4 0 2 1
SIN3A WILD-TYPE 50 10 22 21
'C1ORF88 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.18 (Fisher's exact test), Q value = 0.48

Table S19552.  Gene #1858: 'C1ORF88 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
C1ORF88 MUTATED 5 1 0 0
C1ORF88 WILD-TYPE 173 182 101 20
'C1ORF88 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S19553.  Gene #1858: 'C1ORF88 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
C1ORF88 MUTATED 1 1 2
C1ORF88 WILD-TYPE 86 79 98
'C1ORF88 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.846 (Fisher's exact test), Q value = 1

Table S19554.  Gene #1858: 'C1ORF88 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
C1ORF88 MUTATED 1 3 1
C1ORF88 WILD-TYPE 88 157 137
'C1ORF88 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S19555.  Gene #1858: 'C1ORF88 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
C1ORF88 MUTATED 2 2 1
C1ORF88 WILD-TYPE 180 131 71
'C1ORF88 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.942 (Fisher's exact test), Q value = 1

Table S19556.  Gene #1858: 'C1ORF88 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
C1ORF88 MUTATED 2 1 1 2
C1ORF88 WILD-TYPE 110 95 91 184
'C1ORF88 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.415 (Fisher's exact test), Q value = 0.74

Table S19557.  Gene #1858: 'C1ORF88 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
C1ORF88 MUTATED 1 0 1 1 1 0 2
C1ORF88 WILD-TYPE 59 50 48 39 62 125 97
'C1ORF88 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.744 (Fisher's exact test), Q value = 1

Table S19558.  Gene #1858: 'C1ORF88 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
C1ORF88 MUTATED 3 1 0 2
C1ORF88 WILD-TYPE 127 77 68 194
'C1ORF88 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.39 (Fisher's exact test), Q value = 0.72

Table S19559.  Gene #1858: 'C1ORF88 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
C1ORF88 MUTATED 1 1 1 0 2 1 0 0 0
C1ORF88 WILD-TYPE 39 61 27 80 67 47 43 28 74
'GLB1L2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00605 (Fisher's exact test), Q value = 0.071

Table S19560.  Gene #1859: 'GLB1L2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
GLB1L2 MUTATED 4 0 0 1
GLB1L2 WILD-TYPE 42 58 64 42

Figure S4786.  Get High-res Image Gene #1859: 'GLB1L2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'GLB1L2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.019 (Fisher's exact test), Q value = 0.14

Table S19561.  Gene #1859: 'GLB1L2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
GLB1L2 MUTATED 4 1 0
GLB1L2 WILD-TYPE 47 82 77

Figure S4787.  Get High-res Image Gene #1859: 'GLB1L2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'GLB1L2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00357 (Fisher's exact test), Q value = 0.054

Table S19562.  Gene #1859: 'GLB1L2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
GLB1L2 MUTATED 12 1 1 0
GLB1L2 WILD-TYPE 166 182 100 20

Figure S4788.  Get High-res Image Gene #1859: 'GLB1L2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'GLB1L2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0322 (Fisher's exact test), Q value = 0.18

Table S19563.  Gene #1859: 'GLB1L2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
GLB1L2 MUTATED 2 0 7
GLB1L2 WILD-TYPE 85 80 93

Figure S4789.  Get High-res Image Gene #1859: 'GLB1L2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'GLB1L2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.932 (Fisher's exact test), Q value = 1

Table S19564.  Gene #1859: 'GLB1L2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
GLB1L2 MUTATED 2 5 5
GLB1L2 WILD-TYPE 87 155 133
'GLB1L2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.926 (Fisher's exact test), Q value = 1

Table S19565.  Gene #1859: 'GLB1L2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
GLB1L2 MUTATED 5 5 2
GLB1L2 WILD-TYPE 177 128 70
'GLB1L2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0111 (Fisher's exact test), Q value = 0.1

Table S19566.  Gene #1859: 'GLB1L2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
GLB1L2 MUTATED 0 2 7 5
GLB1L2 WILD-TYPE 112 94 85 181

Figure S4790.  Get High-res Image Gene #1859: 'GLB1L2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'GLB1L2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 2e-05 (Fisher's exact test), Q value = 0.0017

Table S19567.  Gene #1859: 'GLB1L2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
GLB1L2 MUTATED 0 0 8 0 1 0 5
GLB1L2 WILD-TYPE 60 50 41 40 62 125 94

Figure S4791.  Get High-res Image Gene #1859: 'GLB1L2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'GLB1L2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.48 (Fisher's exact test), Q value = 0.81

Table S19568.  Gene #1859: 'GLB1L2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
GLB1L2 MUTATED 5 2 0 7
GLB1L2 WILD-TYPE 125 76 68 189
'GLB1L2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00075 (Fisher's exact test), Q value = 0.02

Table S19569.  Gene #1859: 'GLB1L2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
GLB1L2 MUTATED 0 1 1 1 9 0 1 1 0
GLB1L2 WILD-TYPE 40 61 27 79 60 48 42 27 74

Figure S4792.  Get High-res Image Gene #1859: 'GLB1L2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'GLB1L2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 8e-05 (Fisher's exact test), Q value = 0.0045

Table S19570.  Gene #1859: 'GLB1L2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
GLB1L2 MUTATED 1 0 0 6
GLB1L2 WILD-TYPE 32 31 27 13

Figure S4793.  Get High-res Image Gene #1859: 'GLB1L2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'GLB1L2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.378 (Fisher's exact test), Q value = 0.71

Table S19571.  Gene #1859: 'GLB1L2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
GLB1L2 MUTATED 4 0 3 0
GLB1L2 WILD-TYPE 50 10 21 22
'OSBPL1A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.017 (Fisher's exact test), Q value = 0.13

Table S19572.  Gene #1860: 'OSBPL1A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
OSBPL1A MUTATED 8 0 2 0
OSBPL1A WILD-TYPE 170 183 99 20

Figure S4794.  Get High-res Image Gene #1860: 'OSBPL1A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'OSBPL1A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.477 (Fisher's exact test), Q value = 0.81

Table S19573.  Gene #1860: 'OSBPL1A MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
OSBPL1A MUTATED 4 1 4
OSBPL1A WILD-TYPE 83 79 96
'OSBPL1A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.047 (Fisher's exact test), Q value = 0.23

Table S19574.  Gene #1860: 'OSBPL1A MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
OSBPL1A MUTATED 2 1 7
OSBPL1A WILD-TYPE 87 159 131

Figure S4795.  Get High-res Image Gene #1860: 'OSBPL1A MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'OSBPL1A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.692 (Fisher's exact test), Q value = 0.97

Table S19575.  Gene #1860: 'OSBPL1A MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
OSBPL1A MUTATED 6 2 2
OSBPL1A WILD-TYPE 176 131 70
'OSBPL1A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.091 (Fisher's exact test), Q value = 0.33

Table S19576.  Gene #1860: 'OSBPL1A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
OSBPL1A MUTATED 1 5 3 2
OSBPL1A WILD-TYPE 111 91 89 184
'OSBPL1A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00672 (Fisher's exact test), Q value = 0.075

Table S19577.  Gene #1860: 'OSBPL1A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
OSBPL1A MUTATED 1 0 5 1 2 0 2
OSBPL1A WILD-TYPE 59 50 44 39 61 125 97

Figure S4796.  Get High-res Image Gene #1860: 'OSBPL1A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'OSBPL1A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.896 (Fisher's exact test), Q value = 1

Table S19578.  Gene #1860: 'OSBPL1A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
OSBPL1A MUTATED 4 2 1 4
OSBPL1A WILD-TYPE 126 76 67 192
'OSBPL1A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.23 (Fisher's exact test), Q value = 0.55

Table S19579.  Gene #1860: 'OSBPL1A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
OSBPL1A MUTATED 1 3 1 2 4 0 0 0 0
OSBPL1A WILD-TYPE 39 59 27 78 65 48 43 28 74
'OSBPL1A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.195 (Fisher's exact test), Q value = 0.5

Table S19580.  Gene #1860: 'OSBPL1A MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
OSBPL1A MUTATED 0 1 2 2
OSBPL1A WILD-TYPE 33 30 25 17
'OSBPL1A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.893 (Fisher's exact test), Q value = 1

Table S19581.  Gene #1860: 'OSBPL1A MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
OSBPL1A MUTATED 2 0 2 1
OSBPL1A WILD-TYPE 52 10 22 21
'AFM MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.029 (Fisher's exact test), Q value = 0.17

Table S19582.  Gene #1861: 'AFM MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
AFM MUTATED 1 1 0 4
AFM WILD-TYPE 45 57 64 39

Figure S4797.  Get High-res Image Gene #1861: 'AFM MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'AFM MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.338 (Fisher's exact test), Q value = 0.67

Table S19583.  Gene #1861: 'AFM MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
AFM MUTATED 3 2 1
AFM WILD-TYPE 48 81 76
'AFM MUTATION STATUS' versus 'CN_CNMF'

P value = 0.186 (Fisher's exact test), Q value = 0.49

Table S19584.  Gene #1861: 'AFM MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
AFM MUTATED 10 3 4 0
AFM WILD-TYPE 168 180 97 20
'AFM MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.319 (Fisher's exact test), Q value = 0.65

Table S19585.  Gene #1861: 'AFM MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
AFM MUTATED 2 3 7
AFM WILD-TYPE 85 77 93
'AFM MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.196 (Fisher's exact test), Q value = 0.5

Table S19586.  Gene #1861: 'AFM MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
AFM MUTATED 3 10 3
AFM WILD-TYPE 86 150 135
'AFM MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.628 (Fisher's exact test), Q value = 0.92

Table S19587.  Gene #1861: 'AFM MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
AFM MUTATED 6 6 4
AFM WILD-TYPE 176 127 68
'AFM MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.884 (Fisher's exact test), Q value = 1

Table S19588.  Gene #1861: 'AFM MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
AFM MUTATED 3 4 4 6
AFM WILD-TYPE 109 92 88 180
'AFM MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.292 (Fisher's exact test), Q value = 0.62

Table S19589.  Gene #1861: 'AFM MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
AFM MUTATED 4 2 3 1 2 1 4
AFM WILD-TYPE 56 48 46 39 61 124 95
'AFM MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.658 (Fisher's exact test), Q value = 0.94

Table S19590.  Gene #1861: 'AFM MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
AFM MUTATED 6 2 3 5
AFM WILD-TYPE 124 76 65 191
'AFM MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0242 (Fisher's exact test), Q value = 0.16

Table S19591.  Gene #1861: 'AFM MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
AFM MUTATED 2 3 3 6 2 0 0 0 0
AFM WILD-TYPE 38 59 25 74 67 48 43 28 74

Figure S4798.  Get High-res Image Gene #1861: 'AFM MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'AFM MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0131 (Fisher's exact test), Q value = 0.11

Table S19592.  Gene #1861: 'AFM MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
AFM MUTATED 0 0 2 3
AFM WILD-TYPE 33 31 25 16

Figure S4799.  Get High-res Image Gene #1861: 'AFM MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'AFM MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.041 (Fisher's exact test), Q value = 0.21

Table S19593.  Gene #1861: 'AFM MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
AFM MUTATED 1 0 4 0
AFM WILD-TYPE 53 10 20 22

Figure S4800.  Get High-res Image Gene #1861: 'AFM MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

'YIPF1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0666 (Fisher's exact test), Q value = 0.28

Table S19594.  Gene #1862: 'YIPF1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
YIPF1 MUTATED 1 0 0 2
YIPF1 WILD-TYPE 45 58 64 41
'YIPF1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.187 (Fisher's exact test), Q value = 0.49

Table S19595.  Gene #1862: 'YIPF1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
YIPF1 MUTATED 2 0 1
YIPF1 WILD-TYPE 49 83 76
'YIPF1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0221 (Fisher's exact test), Q value = 0.15

Table S19596.  Gene #1862: 'YIPF1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
YIPF1 MUTATED 6 0 0 0
YIPF1 WILD-TYPE 172 183 101 20

Figure S4801.  Get High-res Image Gene #1862: 'YIPF1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'YIPF1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S19597.  Gene #1862: 'YIPF1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
YIPF1 MUTATED 1 1 1
YIPF1 WILD-TYPE 86 79 99
'YIPF1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S19598.  Gene #1862: 'YIPF1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
YIPF1 MUTATED 1 2 1
YIPF1 WILD-TYPE 88 158 137
'YIPF1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0905 (Fisher's exact test), Q value = 0.33

Table S19599.  Gene #1862: 'YIPF1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
YIPF1 MUTATED 0 3 1
YIPF1 WILD-TYPE 182 130 71
'YIPF1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.726 (Fisher's exact test), Q value = 0.99

Table S19600.  Gene #1862: 'YIPF1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
YIPF1 MUTATED 1 2 0 3
YIPF1 WILD-TYPE 111 94 92 183
'YIPF1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0432 (Fisher's exact test), Q value = 0.22

Table S19601.  Gene #1862: 'YIPF1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
YIPF1 MUTATED 1 3 0 0 0 0 2
YIPF1 WILD-TYPE 59 47 49 40 63 125 97

Figure S4802.  Get High-res Image Gene #1862: 'YIPF1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'YIPF1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.639 (Fisher's exact test), Q value = 0.93

Table S19602.  Gene #1862: 'YIPF1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
YIPF1 MUTATED 2 0 0 4
YIPF1 WILD-TYPE 128 78 68 192
'YIPF1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.59 (Fisher's exact test), Q value = 0.89

Table S19603.  Gene #1862: 'YIPF1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
YIPF1 MUTATED 1 0 0 1 3 0 0 0 1
YIPF1 WILD-TYPE 39 62 28 79 66 48 43 28 73
'TSPAN7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.234 (Fisher's exact test), Q value = 0.55

Table S19604.  Gene #1863: 'TSPAN7 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
TSPAN7 MUTATED 6 1 2 0
TSPAN7 WILD-TYPE 172 182 99 20
'TSPAN7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.205 (Fisher's exact test), Q value = 0.51

Table S19605.  Gene #1863: 'TSPAN7 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
TSPAN7 MUTATED 3 0 4
TSPAN7 WILD-TYPE 84 80 96
'TSPAN7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.164 (Fisher's exact test), Q value = 0.46

Table S19606.  Gene #1863: 'TSPAN7 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
TSPAN7 MUTATED 1 1 5
TSPAN7 WILD-TYPE 88 159 133
'TSPAN7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.547 (Fisher's exact test), Q value = 0.87

Table S19607.  Gene #1863: 'TSPAN7 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
TSPAN7 MUTATED 5 1 1
TSPAN7 WILD-TYPE 177 132 71
'TSPAN7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.235 (Fisher's exact test), Q value = 0.56

Table S19608.  Gene #1863: 'TSPAN7 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
TSPAN7 MUTATED 1 2 4 2
TSPAN7 WILD-TYPE 111 94 88 184
'TSPAN7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00358 (Fisher's exact test), Q value = 0.054

Table S19609.  Gene #1863: 'TSPAN7 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
TSPAN7 MUTATED 1 0 5 0 1 0 2
TSPAN7 WILD-TYPE 59 50 44 40 62 125 97

Figure S4803.  Get High-res Image Gene #1863: 'TSPAN7 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'TSPAN7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.473 (Fisher's exact test), Q value = 0.8

Table S19610.  Gene #1863: 'TSPAN7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
TSPAN7 MUTATED 4 2 0 3
TSPAN7 WILD-TYPE 126 76 68 193
'TSPAN7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0477 (Fisher's exact test), Q value = 0.23

Table S19611.  Gene #1863: 'TSPAN7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
TSPAN7 MUTATED 0 4 0 1 4 0 0 0 0
TSPAN7 WILD-TYPE 40 58 28 79 65 48 43 28 74

Figure S4804.  Get High-res Image Gene #1863: 'TSPAN7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'TSPAN7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.874 (Fisher's exact test), Q value = 1

Table S19612.  Gene #1863: 'TSPAN7 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
TSPAN7 MUTATED 1 1 0 1
TSPAN7 WILD-TYPE 32 30 27 18
'TSPAN7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.562 (Fisher's exact test), Q value = 0.87

Table S19613.  Gene #1863: 'TSPAN7 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
TSPAN7 MUTATED 3 0 0 0
TSPAN7 WILD-TYPE 51 10 24 22
'MLLT10 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.359 (Fisher's exact test), Q value = 0.69

Table S19614.  Gene #1864: 'MLLT10 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
MLLT10 MUTATED 2 2 0 1
MLLT10 WILD-TYPE 44 56 64 42
'MLLT10 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.214 (Fisher's exact test), Q value = 0.52

Table S19615.  Gene #1864: 'MLLT10 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
MLLT10 MUTATED 2 3 0
MLLT10 WILD-TYPE 49 80 77
'MLLT10 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0309 (Fisher's exact test), Q value = 0.18

Table S19616.  Gene #1864: 'MLLT10 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
MLLT10 MUTATED 8 2 0 1
MLLT10 WILD-TYPE 170 181 101 19

Figure S4805.  Get High-res Image Gene #1864: 'MLLT10 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'MLLT10 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.529 (Fisher's exact test), Q value = 0.85

Table S19617.  Gene #1864: 'MLLT10 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
MLLT10 MUTATED 3 1 1
MLLT10 WILD-TYPE 84 79 99
'MLLT10 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0366 (Fisher's exact test), Q value = 0.2

Table S19618.  Gene #1864: 'MLLT10 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
MLLT10 MUTATED 1 1 7
MLLT10 WILD-TYPE 88 159 131

Figure S4806.  Get High-res Image Gene #1864: 'MLLT10 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'MLLT10 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.912 (Fisher's exact test), Q value = 1

Table S19619.  Gene #1864: 'MLLT10 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
MLLT10 MUTATED 4 3 2
MLLT10 WILD-TYPE 178 130 70
'MLLT10 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.763 (Fisher's exact test), Q value = 1

Table S19620.  Gene #1864: 'MLLT10 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
MLLT10 MUTATED 2 1 3 4
MLLT10 WILD-TYPE 110 95 89 182
'MLLT10 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.617 (Fisher's exact test), Q value = 0.92

Table S19621.  Gene #1864: 'MLLT10 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
MLLT10 MUTATED 0 1 1 0 3 2 3
MLLT10 WILD-TYPE 60 49 48 40 60 123 96
'MLLT10 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0184 (Fisher's exact test), Q value = 0.14

Table S19622.  Gene #1864: 'MLLT10 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
MLLT10 MUTATED 0 4 0 7
MLLT10 WILD-TYPE 130 74 68 189

Figure S4807.  Get High-res Image Gene #1864: 'MLLT10 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'MLLT10 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.437 (Fisher's exact test), Q value = 0.76

Table S19623.  Gene #1864: 'MLLT10 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
MLLT10 MUTATED 0 3 1 1 2 3 0 0 1
MLLT10 WILD-TYPE 40 59 27 79 67 45 43 28 73
'MLLT10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.554 (Fisher's exact test), Q value = 0.87

Table S19624.  Gene #1864: 'MLLT10 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
MLLT10 MUTATED 1 2 0 0
MLLT10 WILD-TYPE 32 29 27 19
'MLLT10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.195 (Fisher's exact test), Q value = 0.5

Table S19625.  Gene #1864: 'MLLT10 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
MLLT10 MUTATED 1 1 0 1
MLLT10 WILD-TYPE 53 9 24 21
'CCDC6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.03 (Fisher's exact test), Q value = 0.18

Table S19626.  Gene #1865: 'CCDC6 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
CCDC6 MUTATED 9 2 0 0
CCDC6 WILD-TYPE 169 181 101 20

Figure S4808.  Get High-res Image Gene #1865: 'CCDC6 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'CCDC6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0949 (Fisher's exact test), Q value = 0.34

Table S19627.  Gene #1865: 'CCDC6 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
CCDC6 MUTATED 5 0 4
CCDC6 WILD-TYPE 82 80 96
'CCDC6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.426 (Fisher's exact test), Q value = 0.75

Table S19628.  Gene #1865: 'CCDC6 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
CCDC6 MUTATED 2 3 6
CCDC6 WILD-TYPE 87 157 132
'CCDC6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.31 (Fisher's exact test), Q value = 0.64

Table S19629.  Gene #1865: 'CCDC6 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
CCDC6 MUTATED 8 2 1
CCDC6 WILD-TYPE 174 131 71
'CCDC6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.332 (Fisher's exact test), Q value = 0.66

Table S19630.  Gene #1865: 'CCDC6 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
CCDC6 MUTATED 1 4 3 3
CCDC6 WILD-TYPE 111 92 89 183
'CCDC6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.316 (Fisher's exact test), Q value = 0.64

Table S19631.  Gene #1865: 'CCDC6 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
CCDC6 MUTATED 1 2 3 0 2 1 2
CCDC6 WILD-TYPE 59 48 46 40 61 124 97
'CCDC6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0577 (Fisher's exact test), Q value = 0.26

Table S19632.  Gene #1865: 'CCDC6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
CCDC6 MUTATED 5 4 0 2
CCDC6 WILD-TYPE 125 74 68 194
'CCDC6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.915 (Fisher's exact test), Q value = 1

Table S19633.  Gene #1865: 'CCDC6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
CCDC6 MUTATED 1 3 1 1 2 1 1 0 1
CCDC6 WILD-TYPE 39 59 27 79 67 47 42 28 73
'SGOL2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0153 (Fisher's exact test), Q value = 0.12

Table S19634.  Gene #1866: 'SGOL2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
SGOL2 MUTATED 1 0 0 3
SGOL2 WILD-TYPE 45 58 64 40

Figure S4809.  Get High-res Image Gene #1866: 'SGOL2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'SGOL2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.833 (Fisher's exact test), Q value = 1

Table S19635.  Gene #1866: 'SGOL2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
SGOL2 MUTATED 1 1 2
SGOL2 WILD-TYPE 50 82 75
'SGOL2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0527 (Fisher's exact test), Q value = 0.25

Table S19636.  Gene #1866: 'SGOL2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
SGOL2 MUTATED 11 3 1 0
SGOL2 WILD-TYPE 167 180 100 20
'SGOL2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.576 (Fisher's exact test), Q value = 0.88

Table S19637.  Gene #1866: 'SGOL2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
SGOL2 MUTATED 4 5 3
SGOL2 WILD-TYPE 83 75 97
'SGOL2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.298 (Fisher's exact test), Q value = 0.63

Table S19638.  Gene #1866: 'SGOL2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
SGOL2 MUTATED 2 4 8
SGOL2 WILD-TYPE 87 156 130
'SGOL2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.635 (Fisher's exact test), Q value = 0.93

Table S19639.  Gene #1866: 'SGOL2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
SGOL2 MUTATED 8 5 1
SGOL2 WILD-TYPE 174 128 71
'SGOL2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.784 (Fisher's exact test), Q value = 1

Table S19640.  Gene #1866: 'SGOL2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
SGOL2 MUTATED 3 4 4 5
SGOL2 WILD-TYPE 109 92 88 181
'SGOL2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.131 (Fisher's exact test), Q value = 0.4

Table S19641.  Gene #1866: 'SGOL2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
SGOL2 MUTATED 3 2 4 0 3 1 3
SGOL2 WILD-TYPE 57 48 45 40 60 124 96
'SGOL2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.239 (Fisher's exact test), Q value = 0.56

Table S19642.  Gene #1866: 'SGOL2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
SGOL2 MUTATED 7 3 0 6
SGOL2 WILD-TYPE 123 75 68 190
'SGOL2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0567 (Fisher's exact test), Q value = 0.26

Table S19643.  Gene #1866: 'SGOL2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
SGOL2 MUTATED 0 4 4 3 3 0 1 0 1
SGOL2 WILD-TYPE 40 58 24 77 66 48 42 28 73
'SGOL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.626 (Fisher's exact test), Q value = 0.92

Table S19644.  Gene #1866: 'SGOL2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
SGOL2 MUTATED 0 1 1 1
SGOL2 WILD-TYPE 33 30 26 18
'SGOL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S19645.  Gene #1866: 'SGOL2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
SGOL2 MUTATED 2 0 1 0
SGOL2 WILD-TYPE 52 10 23 22
'HECW1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.036 (Fisher's exact test), Q value = 0.2

Table S19646.  Gene #1867: 'HECW1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
HECW1 MUTATED 1 0 1 4
HECW1 WILD-TYPE 45 58 63 39

Figure S4810.  Get High-res Image Gene #1867: 'HECW1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'HECW1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.58 (Fisher's exact test), Q value = 0.88

Table S19647.  Gene #1867: 'HECW1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
HECW1 MUTATED 2 1 3
HECW1 WILD-TYPE 49 82 74
'HECW1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00132 (Fisher's exact test), Q value = 0.029

Table S19648.  Gene #1867: 'HECW1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
HECW1 MUTATED 24 8 3 3
HECW1 WILD-TYPE 154 175 98 17

Figure S4811.  Get High-res Image Gene #1867: 'HECW1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'HECW1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.292 (Fisher's exact test), Q value = 0.62

Table S19649.  Gene #1867: 'HECW1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
HECW1 MUTATED 13 6 13
HECW1 WILD-TYPE 74 74 87
'HECW1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.672 (Fisher's exact test), Q value = 0.95

Table S19650.  Gene #1867: 'HECW1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
HECW1 MUTATED 7 13 15
HECW1 WILD-TYPE 82 147 123
'HECW1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.506 (Fisher's exact test), Q value = 0.83

Table S19651.  Gene #1867: 'HECW1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
HECW1 MUTATED 19 12 4
HECW1 WILD-TYPE 163 121 68
'HECW1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0286 (Fisher's exact test), Q value = 0.17

Table S19652.  Gene #1867: 'HECW1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
HECW1 MUTATED 9 14 8 8
HECW1 WILD-TYPE 103 82 84 178

Figure S4812.  Get High-res Image Gene #1867: 'HECW1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'HECW1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 2e-05 (Fisher's exact test), Q value = 0.0017

Table S19653.  Gene #1867: 'HECW1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
HECW1 MUTATED 6 5 11 7 3 1 6
HECW1 WILD-TYPE 54 45 38 33 60 124 93

Figure S4813.  Get High-res Image Gene #1867: 'HECW1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'HECW1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0844 (Fisher's exact test), Q value = 0.31

Table S19654.  Gene #1867: 'HECW1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
HECW1 MUTATED 17 6 5 10
HECW1 WILD-TYPE 113 72 63 186
'HECW1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0433 (Fisher's exact test), Q value = 0.22

Table S19655.  Gene #1867: 'HECW1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
HECW1 MUTATED 4 6 4 5 9 3 6 0 1
HECW1 WILD-TYPE 36 56 24 75 60 45 37 28 73

Figure S4814.  Get High-res Image Gene #1867: 'HECW1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'HECW1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00315 (Fisher's exact test), Q value = 0.05

Table S19656.  Gene #1867: 'HECW1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
HECW1 MUTATED 10 0 3 3
HECW1 WILD-TYPE 23 31 24 16

Figure S4815.  Get High-res Image Gene #1867: 'HECW1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'HECW1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.56 (Fisher's exact test), Q value = 0.87

Table S19657.  Gene #1867: 'HECW1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
HECW1 MUTATED 8 0 5 3
HECW1 WILD-TYPE 46 10 19 19
'C14ORF180 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.535 (Fisher's exact test), Q value = 0.85

Table S19658.  Gene #1868: 'C14ORF180 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
C14ORF180 MUTATED 3 1 0 0
C14ORF180 WILD-TYPE 175 182 101 20
'C14ORF180 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S19659.  Gene #1868: 'C14ORF180 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
C14ORF180 MUTATED 1 1 2
C14ORF180 WILD-TYPE 86 79 98
'C14ORF180 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.683 (Fisher's exact test), Q value = 0.96

Table S19660.  Gene #1868: 'C14ORF180 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
C14ORF180 MUTATED 0 2 2
C14ORF180 WILD-TYPE 89 158 136
'C14ORF180 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.828 (Fisher's exact test), Q value = 1

Table S19661.  Gene #1868: 'C14ORF180 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
C14ORF180 MUTATED 2 2 0
C14ORF180 WILD-TYPE 180 131 72
'C14ORF180 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.139 (Fisher's exact test), Q value = 0.41

Table S19662.  Gene #1868: 'C14ORF180 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
C14ORF180 MUTATED 1 1 2 0
C14ORF180 WILD-TYPE 111 95 90 186
'C14ORF180 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00325 (Fisher's exact test), Q value = 0.051

Table S19663.  Gene #1868: 'C14ORF180 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
C14ORF180 MUTATED 0 1 3 0 0 0 0
C14ORF180 WILD-TYPE 60 49 46 40 63 125 99

Figure S4816.  Get High-res Image Gene #1868: 'C14ORF180 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'C14ORF180 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0681 (Fisher's exact test), Q value = 0.28

Table S19664.  Gene #1868: 'C14ORF180 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
C14ORF180 MUTATED 3 0 1 0
C14ORF180 WILD-TYPE 127 78 67 196
'C14ORF180 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.248 (Fisher's exact test), Q value = 0.57

Table S19665.  Gene #1868: 'C14ORF180 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
C14ORF180 MUTATED 0 1 0 0 1 0 2 0 0
C14ORF180 WILD-TYPE 40 61 28 80 68 48 41 28 74
'C14ORF180 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.138 (Fisher's exact test), Q value = 0.41

Table S19666.  Gene #1868: 'C14ORF180 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
C14ORF180 MUTATED 1 0 0 2
C14ORF180 WILD-TYPE 32 31 27 17
'C14ORF180 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.693 (Fisher's exact test), Q value = 0.97

Table S19667.  Gene #1868: 'C14ORF180 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
C14ORF180 MUTATED 1 0 1 1
C14ORF180 WILD-TYPE 53 10 23 21
'USP14 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0058 (Fisher's exact test), Q value = 0.069

Table S19668.  Gene #1869: 'USP14 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
USP14 MUTATED 6 0 0 1
USP14 WILD-TYPE 172 183 101 19

Figure S4817.  Get High-res Image Gene #1869: 'USP14 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'USP14 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.141 (Fisher's exact test), Q value = 0.42

Table S19669.  Gene #1869: 'USP14 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
USP14 MUTATED 4 0 2
USP14 WILD-TYPE 83 80 98
'USP14 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.509 (Fisher's exact test), Q value = 0.83

Table S19670.  Gene #1869: 'USP14 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
USP14 MUTATED 0 3 3
USP14 WILD-TYPE 89 157 135
'USP14 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.579 (Fisher's exact test), Q value = 0.88

Table S19671.  Gene #1869: 'USP14 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
USP14 MUTATED 3 3 0
USP14 WILD-TYPE 179 130 72
'USP14 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.169 (Fisher's exact test), Q value = 0.47

Table S19672.  Gene #1869: 'USP14 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
USP14 MUTATED 0 2 3 2
USP14 WILD-TYPE 112 94 89 184
'USP14 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0657 (Fisher's exact test), Q value = 0.28

Table S19673.  Gene #1869: 'USP14 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
USP14 MUTATED 0 1 3 0 1 0 2
USP14 WILD-TYPE 60 49 46 40 62 125 97
'USP14 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.48 (Fisher's exact test), Q value = 0.81

Table S19674.  Gene #1869: 'USP14 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
USP14 MUTATED 3 2 0 2
USP14 WILD-TYPE 127 76 68 194
'USP14 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.908 (Fisher's exact test), Q value = 1

Table S19675.  Gene #1869: 'USP14 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
USP14 MUTATED 1 2 0 1 2 0 0 0 1
USP14 WILD-TYPE 39 60 28 79 67 48 43 28 73
'USP14 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.872 (Fisher's exact test), Q value = 1

Table S19676.  Gene #1869: 'USP14 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
USP14 MUTATED 1 1 0 1
USP14 WILD-TYPE 32 30 27 18
'USP14 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.841 (Fisher's exact test), Q value = 1

Table S19677.  Gene #1869: 'USP14 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
USP14 MUTATED 2 0 0 1
USP14 WILD-TYPE 52 10 24 21
'TMEM144 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.309 (Fisher's exact test), Q value = 0.64

Table S19678.  Gene #1870: 'TMEM144 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
TMEM144 MUTATED 1 1 0 2
TMEM144 WILD-TYPE 45 57 64 41
'TMEM144 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.177 (Fisher's exact test), Q value = 0.48

Table S19679.  Gene #1870: 'TMEM144 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
TMEM144 MUTATED 1 0 3
TMEM144 WILD-TYPE 50 83 74
'TMEM144 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0612 (Fisher's exact test), Q value = 0.27

Table S19680.  Gene #1870: 'TMEM144 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
TMEM144 MUTATED 7 1 0 0
TMEM144 WILD-TYPE 171 182 101 20
'TMEM144 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.393 (Fisher's exact test), Q value = 0.72

Table S19681.  Gene #1870: 'TMEM144 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
TMEM144 MUTATED 1 0 3
TMEM144 WILD-TYPE 86 80 97
'TMEM144 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S19682.  Gene #1870: 'TMEM144 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
TMEM144 MUTATED 1 3 2
TMEM144 WILD-TYPE 88 157 136
'TMEM144 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.76 (Fisher's exact test), Q value = 1

Table S19683.  Gene #1870: 'TMEM144 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
TMEM144 MUTATED 4 1 1
TMEM144 WILD-TYPE 178 132 71
'TMEM144 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.414 (Fisher's exact test), Q value = 0.74

Table S19684.  Gene #1870: 'TMEM144 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
TMEM144 MUTATED 0 2 2 4
TMEM144 WILD-TYPE 112 94 90 182
'TMEM144 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0473 (Fisher's exact test), Q value = 0.23

Table S19685.  Gene #1870: 'TMEM144 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
TMEM144 MUTATED 1 0 4 0 0 1 2
TMEM144 WILD-TYPE 59 50 45 40 63 124 97

Figure S4818.  Get High-res Image Gene #1870: 'TMEM144 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'TMEM144 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.733 (Fisher's exact test), Q value = 1

Table S19686.  Gene #1870: 'TMEM144 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
TMEM144 MUTATED 2 1 0 5
TMEM144 WILD-TYPE 128 77 68 191
'TMEM144 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.118 (Fisher's exact test), Q value = 0.38

Table S19687.  Gene #1870: 'TMEM144 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
TMEM144 MUTATED 1 1 1 0 4 1 0 0 0
TMEM144 WILD-TYPE 39 61 27 80 65 47 43 28 74
'TMEM144 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.136 (Fisher's exact test), Q value = 0.41

Table S19688.  Gene #1870: 'TMEM144 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
TMEM144 MUTATED 1 0 0 2
TMEM144 WILD-TYPE 32 31 27 17
'TMEM144 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S19689.  Gene #1870: 'TMEM144 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
TMEM144 MUTATED 2 0 1 0
TMEM144 WILD-TYPE 52 10 23 22
'PIAS2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0652 (Fisher's exact test), Q value = 0.28

Table S19690.  Gene #1871: 'PIAS2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
PIAS2 MUTATED 1 0 0 2
PIAS2 WILD-TYPE 45 58 64 41
'PIAS2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S19691.  Gene #1871: 'PIAS2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
PIAS2 MUTATED 1 1 1
PIAS2 WILD-TYPE 50 82 76
'PIAS2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.383 (Fisher's exact test), Q value = 0.71

Table S19692.  Gene #1871: 'PIAS2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
PIAS2 MUTATED 4 1 0 0
PIAS2 WILD-TYPE 174 182 101 20
'PIAS2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.686 (Fisher's exact test), Q value = 0.96

Table S19693.  Gene #1871: 'PIAS2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
PIAS2 MUTATED 0 2 2
PIAS2 WILD-TYPE 89 158 136
'PIAS2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.674 (Fisher's exact test), Q value = 0.96

Table S19694.  Gene #1871: 'PIAS2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
PIAS2 MUTATED 3 1 0
PIAS2 WILD-TYPE 179 132 72
'PIAS2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.265 (Fisher's exact test), Q value = 0.59

Table S19695.  Gene #1871: 'PIAS2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
PIAS2 MUTATED 0 0 2 3
PIAS2 WILD-TYPE 112 96 90 183
'PIAS2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.797 (Fisher's exact test), Q value = 1

Table S19696.  Gene #1871: 'PIAS2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
PIAS2 MUTATED 1 1 1 0 0 1 1
PIAS2 WILD-TYPE 59 49 48 40 63 124 98
'PIAS2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.932 (Fisher's exact test), Q value = 1

Table S19697.  Gene #1871: 'PIAS2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
PIAS2 MUTATED 1 1 0 3
PIAS2 WILD-TYPE 129 77 68 193
'PIAS2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.801 (Fisher's exact test), Q value = 1

Table S19698.  Gene #1871: 'PIAS2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
PIAS2 MUTATED 1 1 0 1 2 0 0 0 0
PIAS2 WILD-TYPE 39 61 28 79 67 48 43 28 74
'HIST4H4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.66 (Fisher's exact test), Q value = 0.95

Table S19699.  Gene #1872: 'HIST4H4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
HIST4H4 MUTATED 2 1 0 0
HIST4H4 WILD-TYPE 176 182 101 20
'HIST4H4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.778 (Fisher's exact test), Q value = 1

Table S19700.  Gene #1872: 'HIST4H4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
HIST4H4 MUTATED 1 0 2
HIST4H4 WILD-TYPE 86 80 98
'HIST4H4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0139 (Fisher's exact test), Q value = 0.12

Table S19701.  Gene #1872: 'HIST4H4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
HIST4H4 MUTATED 0 3 0 0
HIST4H4 WILD-TYPE 112 93 92 186

Figure S4819.  Get High-res Image Gene #1872: 'HIST4H4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'HIST4H4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00821 (Fisher's exact test), Q value = 0.084

Table S19702.  Gene #1872: 'HIST4H4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
HIST4H4 MUTATED 0 1 0 2 0 0 0
HIST4H4 WILD-TYPE 60 49 49 38 63 125 99

Figure S4820.  Get High-res Image Gene #1872: 'HIST4H4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'HIST4H4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0672 (Fisher's exact test), Q value = 0.28

Table S19703.  Gene #1872: 'HIST4H4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
HIST4H4 MUTATED 3 0 0 0
HIST4H4 WILD-TYPE 127 78 68 196
'HIST4H4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0348 (Fisher's exact test), Q value = 0.19

Table S19704.  Gene #1872: 'HIST4H4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
HIST4H4 MUTATED 2 0 0 0 0 0 1 0 0
HIST4H4 WILD-TYPE 38 62 28 80 69 48 42 28 74

Figure S4821.  Get High-res Image Gene #1872: 'HIST4H4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'ASTE1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00377 (Fisher's exact test), Q value = 0.056

Table S19705.  Gene #1873: 'ASTE1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ASTE1 MUTATED 1 0 0 4
ASTE1 WILD-TYPE 45 58 64 39

Figure S4822.  Get High-res Image Gene #1873: 'ASTE1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'ASTE1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0447 (Fisher's exact test), Q value = 0.22

Table S19706.  Gene #1873: 'ASTE1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ASTE1 MUTATED 3 0 2
ASTE1 WILD-TYPE 48 83 75

Figure S4823.  Get High-res Image Gene #1873: 'ASTE1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'ASTE1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0126 (Fisher's exact test), Q value = 0.11

Table S19707.  Gene #1873: 'ASTE1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ASTE1 MUTATED 8 1 0 1
ASTE1 WILD-TYPE 170 182 101 19

Figure S4824.  Get High-res Image Gene #1873: 'ASTE1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ASTE1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.627 (Fisher's exact test), Q value = 0.92

Table S19708.  Gene #1873: 'ASTE1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ASTE1 MUTATED 1 1 3
ASTE1 WILD-TYPE 86 79 97
'ASTE1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.815 (Fisher's exact test), Q value = 1

Table S19709.  Gene #1873: 'ASTE1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ASTE1 MUTATED 2 4 2
ASTE1 WILD-TYPE 87 156 136
'ASTE1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.725 (Fisher's exact test), Q value = 0.99

Table S19710.  Gene #1873: 'ASTE1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ASTE1 MUTATED 3 3 2
ASTE1 WILD-TYPE 179 130 70
'ASTE1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.806 (Fisher's exact test), Q value = 1

Table S19711.  Gene #1873: 'ASTE1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ASTE1 MUTATED 1 2 2 5
ASTE1 WILD-TYPE 111 94 90 181
'ASTE1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0509 (Fisher's exact test), Q value = 0.24

Table S19712.  Gene #1873: 'ASTE1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ASTE1 MUTATED 1 1 3 1 0 0 4
ASTE1 WILD-TYPE 59 49 46 39 63 125 95
'ASTE1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.622 (Fisher's exact test), Q value = 0.92

Table S19713.  Gene #1873: 'ASTE1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ASTE1 MUTATED 4 1 0 5
ASTE1 WILD-TYPE 126 77 68 191
'ASTE1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0549 (Fisher's exact test), Q value = 0.25

Table S19714.  Gene #1873: 'ASTE1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ASTE1 MUTATED 1 2 1 0 5 1 0 0 0
ASTE1 WILD-TYPE 39 60 27 80 64 47 43 28 74
'FBXO38 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.368 (Fisher's exact test), Q value = 0.7

Table S19715.  Gene #1874: 'FBXO38 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
FBXO38 MUTATED 2 1 0 1
FBXO38 WILD-TYPE 44 57 64 42
'FBXO38 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0403 (Fisher's exact test), Q value = 0.21

Table S19716.  Gene #1874: 'FBXO38 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
FBXO38 MUTATED 3 0 1
FBXO38 WILD-TYPE 48 83 76

Figure S4825.  Get High-res Image Gene #1874: 'FBXO38 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'FBXO38 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0517 (Fisher's exact test), Q value = 0.25

Table S19717.  Gene #1874: 'FBXO38 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
FBXO38 MUTATED 12 3 2 1
FBXO38 WILD-TYPE 166 180 99 19
'FBXO38 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.111 (Fisher's exact test), Q value = 0.37

Table S19718.  Gene #1874: 'FBXO38 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
FBXO38 MUTATED 7 1 6
FBXO38 WILD-TYPE 80 79 94
'FBXO38 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0541 (Fisher's exact test), Q value = 0.25

Table S19719.  Gene #1874: 'FBXO38 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
FBXO38 MUTATED 1 3 9
FBXO38 WILD-TYPE 88 157 129
'FBXO38 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.612 (Fisher's exact test), Q value = 0.91

Table S19720.  Gene #1874: 'FBXO38 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
FBXO38 MUTATED 8 3 2
FBXO38 WILD-TYPE 174 130 70
'FBXO38 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.084 (Fisher's exact test), Q value = 0.31

Table S19721.  Gene #1874: 'FBXO38 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
FBXO38 MUTATED 2 5 7 4
FBXO38 WILD-TYPE 110 91 85 182
'FBXO38 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00035 (Fisher's exact test), Q value = 0.012

Table S19722.  Gene #1874: 'FBXO38 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
FBXO38 MUTATED 1 2 8 1 2 0 4
FBXO38 WILD-TYPE 59 48 41 39 61 125 95

Figure S4826.  Get High-res Image Gene #1874: 'FBXO38 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'FBXO38 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0785 (Fisher's exact test), Q value = 0.3

Table S19723.  Gene #1874: 'FBXO38 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
FBXO38 MUTATED 7 5 0 5
FBXO38 WILD-TYPE 123 73 68 191
'FBXO38 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.269 (Fisher's exact test), Q value = 0.59

Table S19724.  Gene #1874: 'FBXO38 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
FBXO38 MUTATED 2 5 1 1 5 1 1 0 1
FBXO38 WILD-TYPE 38 57 27 79 64 47 42 28 73
'FBXO38 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.025 (Fisher's exact test), Q value = 0.16

Table S19725.  Gene #1874: 'FBXO38 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
FBXO38 MUTATED 3 0 0 3
FBXO38 WILD-TYPE 30 31 27 16

Figure S4827.  Get High-res Image Gene #1874: 'FBXO38 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'FBXO38 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.462 (Fisher's exact test), Q value = 0.79

Table S19726.  Gene #1874: 'FBXO38 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
FBXO38 MUTATED 5 0 0 1
FBXO38 WILD-TYPE 49 10 24 21
'HAP1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.627 (Fisher's exact test), Q value = 0.92

Table S19727.  Gene #1875: 'HAP1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
HAP1 MUTATED 1 1 0 1
HAP1 WILD-TYPE 45 57 64 42
'HAP1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.25 (Fisher's exact test), Q value = 0.58

Table S19728.  Gene #1875: 'HAP1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
HAP1 MUTATED 2 1 0
HAP1 WILD-TYPE 49 82 77
'HAP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0601 (Fisher's exact test), Q value = 0.27

Table S19729.  Gene #1875: 'HAP1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
HAP1 MUTATED 7 1 0 0
HAP1 WILD-TYPE 171 182 101 20
'HAP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.389 (Fisher's exact test), Q value = 0.72

Table S19730.  Gene #1875: 'HAP1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
HAP1 MUTATED 1 0 3
HAP1 WILD-TYPE 86 80 97
'HAP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.277 (Fisher's exact test), Q value = 0.6

Table S19731.  Gene #1875: 'HAP1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
HAP1 MUTATED 0 5 3
HAP1 WILD-TYPE 89 155 135
'HAP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S19732.  Gene #1875: 'HAP1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
HAP1 MUTATED 4 3 1
HAP1 WILD-TYPE 178 130 71
'HAP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.858 (Fisher's exact test), Q value = 1

Table S19733.  Gene #1875: 'HAP1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
HAP1 MUTATED 1 2 2 3
HAP1 WILD-TYPE 111 94 90 183
'HAP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.557 (Fisher's exact test), Q value = 0.87

Table S19734.  Gene #1875: 'HAP1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
HAP1 MUTATED 1 1 2 1 0 1 2
HAP1 WILD-TYPE 59 49 47 39 63 124 97
'HAP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.386 (Fisher's exact test), Q value = 0.71

Table S19735.  Gene #1875: 'HAP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
HAP1 MUTATED 4 1 0 2
HAP1 WILD-TYPE 126 77 68 194
'HAP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.652 (Fisher's exact test), Q value = 0.94

Table S19736.  Gene #1875: 'HAP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
HAP1 MUTATED 0 2 0 3 1 1 0 0 0
HAP1 WILD-TYPE 40 60 28 77 68 47 43 28 74
'TRAF3IP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.28 (Fisher's exact test), Q value = 0.61

Table S19737.  Gene #1876: 'TRAF3IP1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
TRAF3IP1 MUTATED 5 2 0 0
TRAF3IP1 WILD-TYPE 173 181 101 20
'TRAF3IP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0762 (Fisher's exact test), Q value = 0.3

Table S19738.  Gene #1876: 'TRAF3IP1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
TRAF3IP1 MUTATED 4 0 1
TRAF3IP1 WILD-TYPE 83 80 99
'TRAF3IP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.138 (Fisher's exact test), Q value = 0.41

Table S19739.  Gene #1876: 'TRAF3IP1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
TRAF3IP1 MUTATED 0 1 4
TRAF3IP1 WILD-TYPE 89 159 134
'TRAF3IP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.505 (Fisher's exact test), Q value = 0.83

Table S19740.  Gene #1876: 'TRAF3IP1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
TRAF3IP1 MUTATED 4 1 0
TRAF3IP1 WILD-TYPE 178 132 72
'TRAF3IP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.168 (Fisher's exact test), Q value = 0.46

Table S19741.  Gene #1876: 'TRAF3IP1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
TRAF3IP1 MUTATED 0 2 3 2
TRAF3IP1 WILD-TYPE 112 94 89 184
'TRAF3IP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.208 (Fisher's exact test), Q value = 0.52

Table S19742.  Gene #1876: 'TRAF3IP1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
TRAF3IP1 MUTATED 0 1 3 0 1 1 1
TRAF3IP1 WILD-TYPE 60 49 46 40 62 124 98
'TRAF3IP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0623 (Fisher's exact test), Q value = 0.27

Table S19743.  Gene #1876: 'TRAF3IP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
TRAF3IP1 MUTATED 1 4 0 2
TRAF3IP1 WILD-TYPE 129 74 68 194
'TRAF3IP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.117 (Fisher's exact test), Q value = 0.38

Table S19744.  Gene #1876: 'TRAF3IP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
TRAF3IP1 MUTATED 0 4 1 1 0 0 0 0 1
TRAF3IP1 WILD-TYPE 40 58 27 79 69 48 43 28 73
'ZNF318 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00222 (Fisher's exact test), Q value = 0.04

Table S19745.  Gene #1877: 'ZNF318 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ZNF318 MUTATED 4 0 1 6
ZNF318 WILD-TYPE 42 58 63 37

Figure S4828.  Get High-res Image Gene #1877: 'ZNF318 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'ZNF318 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 2e-05 (Fisher's exact test), Q value = 0.0017

Table S19746.  Gene #1877: 'ZNF318 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ZNF318 MUTATED 9 0 2
ZNF318 WILD-TYPE 42 83 75

Figure S4829.  Get High-res Image Gene #1877: 'ZNF318 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'ZNF318 MUTATION STATUS' versus 'CN_CNMF'

P value = 7e-05 (Fisher's exact test), Q value = 0.0041

Table S19747.  Gene #1877: 'ZNF318 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ZNF318 MUTATED 23 4 2 0
ZNF318 WILD-TYPE 155 179 99 20

Figure S4830.  Get High-res Image Gene #1877: 'ZNF318 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ZNF318 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.24 (Fisher's exact test), Q value = 0.56

Table S19748.  Gene #1877: 'ZNF318 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ZNF318 MUTATED 9 3 6
ZNF318 WILD-TYPE 78 77 94
'ZNF318 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0402 (Fisher's exact test), Q value = 0.21

Table S19749.  Gene #1877: 'ZNF318 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ZNF318 MUTATED 4 6 15
ZNF318 WILD-TYPE 85 154 123

Figure S4831.  Get High-res Image Gene #1877: 'ZNF318 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'ZNF318 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.709 (Fisher's exact test), Q value = 0.98

Table S19750.  Gene #1877: 'ZNF318 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ZNF318 MUTATED 14 7 4
ZNF318 WILD-TYPE 168 126 68
'ZNF318 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.206 (Fisher's exact test), Q value = 0.51

Table S19751.  Gene #1877: 'ZNF318 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ZNF318 MUTATED 3 8 8 11
ZNF318 WILD-TYPE 109 88 84 175
'ZNF318 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 8e-05 (Fisher's exact test), Q value = 0.0045

Table S19752.  Gene #1877: 'ZNF318 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ZNF318 MUTATED 2 3 7 0 6 0 12
ZNF318 WILD-TYPE 58 47 42 40 57 125 87

Figure S4832.  Get High-res Image Gene #1877: 'ZNF318 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ZNF318 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.415 (Fisher's exact test), Q value = 0.74

Table S19753.  Gene #1877: 'ZNF318 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ZNF318 MUTATED 6 5 2 16
ZNF318 WILD-TYPE 124 73 66 180
'ZNF318 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00166 (Fisher's exact test), Q value = 0.034

Table S19754.  Gene #1877: 'ZNF318 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ZNF318 MUTATED 1 5 1 3 14 1 2 0 2
ZNF318 WILD-TYPE 39 57 27 77 55 47 41 28 72

Figure S4833.  Get High-res Image Gene #1877: 'ZNF318 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'ZNF318 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.307 (Fisher's exact test), Q value = 0.64

Table S19755.  Gene #1877: 'ZNF318 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
ZNF318 MUTATED 3 1 0 2
ZNF318 WILD-TYPE 30 30 27 17
'ZNF318 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S19756.  Gene #1877: 'ZNF318 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
ZNF318 MUTATED 4 0 1 1
ZNF318 WILD-TYPE 50 10 23 21
'NUP133 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00579 (Fisher's exact test), Q value = 0.069

Table S19757.  Gene #1878: 'NUP133 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
NUP133 MUTATED 2 0 0 4
NUP133 WILD-TYPE 44 58 64 39

Figure S4834.  Get High-res Image Gene #1878: 'NUP133 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'NUP133 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.58 (Fisher's exact test), Q value = 0.89

Table S19758.  Gene #1878: 'NUP133 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
NUP133 MUTATED 2 1 3
NUP133 WILD-TYPE 49 82 74
'NUP133 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00012 (Fisher's exact test), Q value = 0.0059

Table S19759.  Gene #1878: 'NUP133 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
NUP133 MUTATED 16 1 1 1
NUP133 WILD-TYPE 162 182 100 19

Figure S4835.  Get High-res Image Gene #1878: 'NUP133 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'NUP133 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.236 (Fisher's exact test), Q value = 0.56

Table S19760.  Gene #1878: 'NUP133 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
NUP133 MUTATED 5 1 6
NUP133 WILD-TYPE 82 79 94
'NUP133 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.65 (Fisher's exact test), Q value = 0.94

Table S19761.  Gene #1878: 'NUP133 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
NUP133 MUTATED 2 8 6
NUP133 WILD-TYPE 87 152 132
'NUP133 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.47 (Fisher's exact test), Q value = 0.8

Table S19762.  Gene #1878: 'NUP133 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
NUP133 MUTATED 8 7 1
NUP133 WILD-TYPE 174 126 71
'NUP133 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.178 (Fisher's exact test), Q value = 0.48

Table S19763.  Gene #1878: 'NUP133 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
NUP133 MUTATED 1 6 4 8
NUP133 WILD-TYPE 111 90 88 178
'NUP133 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.045 (Fisher's exact test), Q value = 0.23

Table S19764.  Gene #1878: 'NUP133 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
NUP133 MUTATED 2 2 5 1 1 1 7
NUP133 WILD-TYPE 58 48 44 39 62 124 92

Figure S4836.  Get High-res Image Gene #1878: 'NUP133 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'NUP133 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.838 (Fisher's exact test), Q value = 1

Table S19765.  Gene #1878: 'NUP133 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
NUP133 MUTATED 4 3 2 10
NUP133 WILD-TYPE 126 75 66 186
'NUP133 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.317 (Fisher's exact test), Q value = 0.65

Table S19766.  Gene #1878: 'NUP133 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
NUP133 MUTATED 4 3 2 1 3 0 2 1 3
NUP133 WILD-TYPE 36 59 26 79 66 48 41 27 71
'ARAF MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0651 (Fisher's exact test), Q value = 0.28

Table S19767.  Gene #1879: 'ARAF MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ARAF MUTATED 1 0 0 2
ARAF WILD-TYPE 45 58 64 41
'ARAF MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0138 (Fisher's exact test), Q value = 0.12

Table S19768.  Gene #1879: 'ARAF MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ARAF MUTATED 3 0 0
ARAF WILD-TYPE 48 83 77

Figure S4837.  Get High-res Image Gene #1879: 'ARAF MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'ARAF MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00064 (Fisher's exact test), Q value = 0.018

Table S19769.  Gene #1879: 'ARAF MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ARAF MUTATED 10 0 0 0
ARAF WILD-TYPE 168 183 101 20

Figure S4838.  Get High-res Image Gene #1879: 'ARAF MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ARAF MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.18 (Fisher's exact test), Q value = 0.48

Table S19770.  Gene #1879: 'ARAF MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ARAF MUTATED 4 0 3
ARAF WILD-TYPE 83 80 97
'ARAF MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0235 (Fisher's exact test), Q value = 0.16

Table S19771.  Gene #1879: 'ARAF MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ARAF MUTATED 3 0 5
ARAF WILD-TYPE 86 160 133

Figure S4839.  Get High-res Image Gene #1879: 'ARAF MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'ARAF MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0492 (Fisher's exact test), Q value = 0.24

Table S19772.  Gene #1879: 'ARAF MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ARAF MUTATED 5 0 3
ARAF WILD-TYPE 177 133 69

Figure S4840.  Get High-res Image Gene #1879: 'ARAF MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'ARAF MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.414 (Fisher's exact test), Q value = 0.74

Table S19773.  Gene #1879: 'ARAF MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ARAF MUTATED 1 2 4 3
ARAF WILD-TYPE 111 94 88 183
'ARAF MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00455 (Fisher's exact test), Q value = 0.061

Table S19774.  Gene #1879: 'ARAF MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ARAF MUTATED 1 0 5 0 1 0 3
ARAF WILD-TYPE 59 50 44 40 62 125 96

Figure S4841.  Get High-res Image Gene #1879: 'ARAF MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ARAF MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.737 (Fisher's exact test), Q value = 1

Table S19775.  Gene #1879: 'ARAF MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ARAF MUTATED 2 3 1 4
ARAF WILD-TYPE 128 75 67 192
'ARAF MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.17 (Fisher's exact test), Q value = 0.47

Table S19776.  Gene #1879: 'ARAF MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ARAF MUTATED 0 3 1 1 4 0 1 0 0
ARAF WILD-TYPE 40 59 27 79 65 48 42 28 74
'ARAF MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.394 (Fisher's exact test), Q value = 0.72

Table S19777.  Gene #1879: 'ARAF MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
ARAF MUTATED 2 1 0 2
ARAF WILD-TYPE 31 30 27 17
'ARAF MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.266 (Fisher's exact test), Q value = 0.59

Table S19778.  Gene #1879: 'ARAF MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
ARAF MUTATED 5 0 0 0
ARAF WILD-TYPE 49 10 24 22
'MXRA5 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00648 (Fisher's exact test), Q value = 0.074

Table S19779.  Gene #1880: 'MXRA5 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
MXRA5 MUTATED 3 2 0 6
MXRA5 WILD-TYPE 43 56 64 37

Figure S4842.  Get High-res Image Gene #1880: 'MXRA5 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'MXRA5 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.578 (Fisher's exact test), Q value = 0.88

Table S19780.  Gene #1880: 'MXRA5 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
MXRA5 MUTATED 4 3 4
MXRA5 WILD-TYPE 47 80 73
'MXRA5 MUTATION STATUS' versus 'CN_CNMF'

P value = 3e-05 (Fisher's exact test), Q value = 0.0022

Table S19781.  Gene #1880: 'MXRA5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
MXRA5 MUTATED 32 10 4 0
MXRA5 WILD-TYPE 146 173 97 20

Figure S4843.  Get High-res Image Gene #1880: 'MXRA5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'MXRA5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0998 (Fisher's exact test), Q value = 0.35

Table S19782.  Gene #1880: 'MXRA5 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
MXRA5 MUTATED 7 8 18
MXRA5 WILD-TYPE 80 72 82
'MXRA5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.795 (Fisher's exact test), Q value = 1

Table S19783.  Gene #1880: 'MXRA5 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
MXRA5 MUTATED 9 16 17
MXRA5 WILD-TYPE 80 144 121
'MXRA5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.115 (Fisher's exact test), Q value = 0.38

Table S19784.  Gene #1880: 'MXRA5 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
MXRA5 MUTATED 23 16 3
MXRA5 WILD-TYPE 159 117 69
'MXRA5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00246 (Fisher's exact test), Q value = 0.043

Table S19785.  Gene #1880: 'MXRA5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
MXRA5 MUTATED 6 18 11 11
MXRA5 WILD-TYPE 106 78 81 175

Figure S4844.  Get High-res Image Gene #1880: 'MXRA5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'MXRA5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 4e-05 (Fisher's exact test), Q value = 0.0027

Table S19786.  Gene #1880: 'MXRA5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
MXRA5 MUTATED 4 7 14 4 5 2 10
MXRA5 WILD-TYPE 56 43 35 36 58 123 89

Figure S4845.  Get High-res Image Gene #1880: 'MXRA5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'MXRA5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.18 (Fisher's exact test), Q value = 0.48

Table S19787.  Gene #1880: 'MXRA5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
MXRA5 MUTATED 18 7 4 14
MXRA5 WILD-TYPE 112 71 64 182
'MXRA5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.277 (Fisher's exact test), Q value = 0.6

Table S19788.  Gene #1880: 'MXRA5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
MXRA5 MUTATED 4 7 2 4 10 4 7 2 3
MXRA5 WILD-TYPE 36 55 26 76 59 44 36 26 71
'MXRA5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.064 (Fisher's exact test), Q value = 0.27

Table S19789.  Gene #1880: 'MXRA5 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
MXRA5 MUTATED 3 2 2 6
MXRA5 WILD-TYPE 30 29 25 13
'MXRA5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.78 (Fisher's exact test), Q value = 1

Table S19790.  Gene #1880: 'MXRA5 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
MXRA5 MUTATED 7 2 2 2
MXRA5 WILD-TYPE 47 8 22 20
'PAX2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0645 (Fisher's exact test), Q value = 0.28

Table S19791.  Gene #1881: 'PAX2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
PAX2 MUTATED 1 0 0 2
PAX2 WILD-TYPE 45 58 64 41
'PAX2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.35 (Fisher's exact test), Q value = 0.68

Table S19792.  Gene #1881: 'PAX2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
PAX2 MUTATED 1 0 2
PAX2 WILD-TYPE 50 83 75
'PAX2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0999 (Fisher's exact test), Q value = 0.35

Table S19793.  Gene #1881: 'PAX2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
PAX2 MUTATED 5 0 2 0
PAX2 WILD-TYPE 173 183 99 20
'PAX2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0371 (Fisher's exact test), Q value = 0.2

Table S19794.  Gene #1881: 'PAX2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
PAX2 MUTATED 0 0 4
PAX2 WILD-TYPE 87 80 96

Figure S4846.  Get High-res Image Gene #1881: 'PAX2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'PAX2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.509 (Fisher's exact test), Q value = 0.83

Table S19795.  Gene #1881: 'PAX2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
PAX2 MUTATED 0 3 3
PAX2 WILD-TYPE 89 157 135
'PAX2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.294 (Fisher's exact test), Q value = 0.62

Table S19796.  Gene #1881: 'PAX2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
PAX2 MUTATED 2 4 0
PAX2 WILD-TYPE 180 129 72
'PAX2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0114 (Fisher's exact test), Q value = 0.1

Table S19797.  Gene #1881: 'PAX2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
PAX2 MUTATED 0 5 0 2
PAX2 WILD-TYPE 112 91 92 184

Figure S4847.  Get High-res Image Gene #1881: 'PAX2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'PAX2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00558 (Fisher's exact test), Q value = 0.068

Table S19798.  Gene #1881: 'PAX2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
PAX2 MUTATED 1 0 4 1 0 0 1
PAX2 WILD-TYPE 59 50 45 39 63 125 98

Figure S4848.  Get High-res Image Gene #1881: 'PAX2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'PAX2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.351 (Fisher's exact test), Q value = 0.68

Table S19799.  Gene #1881: 'PAX2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
PAX2 MUTATED 4 0 1 2
PAX2 WILD-TYPE 126 78 67 194
'PAX2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0208 (Fisher's exact test), Q value = 0.15

Table S19800.  Gene #1881: 'PAX2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
PAX2 MUTATED 1 1 0 0 5 0 0 0 0
PAX2 WILD-TYPE 39 61 28 80 64 48 43 28 74

Figure S4849.  Get High-res Image Gene #1881: 'PAX2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'FZD3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00089 (Fisher's exact test), Q value = 0.023

Table S19801.  Gene #1882: 'FZD3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
FZD3 MUTATED 4 0 0 5
FZD3 WILD-TYPE 42 58 64 38

Figure S4850.  Get High-res Image Gene #1882: 'FZD3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'FZD3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.017 (Fisher's exact test), Q value = 0.13

Table S19802.  Gene #1882: 'FZD3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
FZD3 MUTATED 6 2 1
FZD3 WILD-TYPE 45 81 76

Figure S4851.  Get High-res Image Gene #1882: 'FZD3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'FZD3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00015 (Fisher's exact test), Q value = 0.0069

Table S19803.  Gene #1882: 'FZD3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
FZD3 MUTATED 13 0 1 0
FZD3 WILD-TYPE 165 183 100 20

Figure S4852.  Get High-res Image Gene #1882: 'FZD3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'FZD3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.204 (Fisher's exact test), Q value = 0.51

Table S19804.  Gene #1882: 'FZD3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
FZD3 MUTATED 3 0 1
FZD3 WILD-TYPE 84 80 99
'FZD3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S19805.  Gene #1882: 'FZD3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
FZD3 MUTATED 2 5 4
FZD3 WILD-TYPE 87 155 134
'FZD3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.783 (Fisher's exact test), Q value = 1

Table S19806.  Gene #1882: 'FZD3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
FZD3 MUTATED 5 5 1
FZD3 WILD-TYPE 177 128 71
'FZD3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0228 (Fisher's exact test), Q value = 0.15

Table S19807.  Gene #1882: 'FZD3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
FZD3 MUTATED 0 1 3 10
FZD3 WILD-TYPE 112 95 89 176

Figure S4853.  Get High-res Image Gene #1882: 'FZD3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'FZD3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0334 (Fisher's exact test), Q value = 0.19

Table S19808.  Gene #1882: 'FZD3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
FZD3 MUTATED 1 0 2 0 2 1 8
FZD3 WILD-TYPE 59 50 47 40 61 124 91

Figure S4854.  Get High-res Image Gene #1882: 'FZD3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'FZD3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.411 (Fisher's exact test), Q value = 0.74

Table S19809.  Gene #1882: 'FZD3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
FZD3 MUTATED 2 2 0 7
FZD3 WILD-TYPE 128 76 68 189
'FZD3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0377 (Fisher's exact test), Q value = 0.2

Table S19810.  Gene #1882: 'FZD3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
FZD3 MUTATED 1 2 1 1 6 0 0 0 0
FZD3 WILD-TYPE 39 60 27 79 63 48 43 28 74

Figure S4855.  Get High-res Image Gene #1882: 'FZD3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'LRRFIP2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0012 (Fisher's exact test), Q value = 0.028

Table S19811.  Gene #1883: 'LRRFIP2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
LRRFIP2 MUTATED 3 0 0 5
LRRFIP2 WILD-TYPE 43 58 64 38

Figure S4856.  Get High-res Image Gene #1883: 'LRRFIP2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'LRRFIP2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.133 (Fisher's exact test), Q value = 0.41

Table S19812.  Gene #1883: 'LRRFIP2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
LRRFIP2 MUTATED 4 1 3
LRRFIP2 WILD-TYPE 47 82 74
'LRRFIP2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00704 (Fisher's exact test), Q value = 0.077

Table S19813.  Gene #1883: 'LRRFIP2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
LRRFIP2 MUTATED 12 3 0 0
LRRFIP2 WILD-TYPE 166 180 101 20

Figure S4857.  Get High-res Image Gene #1883: 'LRRFIP2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'LRRFIP2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.398 (Fisher's exact test), Q value = 0.72

Table S19814.  Gene #1883: 'LRRFIP2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
LRRFIP2 MUTATED 2 1 5
LRRFIP2 WILD-TYPE 85 79 95
'LRRFIP2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.939 (Fisher's exact test), Q value = 1

Table S19815.  Gene #1883: 'LRRFIP2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
LRRFIP2 MUTATED 3 5 6
LRRFIP2 WILD-TYPE 86 155 132
'LRRFIP2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.453 (Fisher's exact test), Q value = 0.78

Table S19816.  Gene #1883: 'LRRFIP2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
LRRFIP2 MUTATED 9 3 2
LRRFIP2 WILD-TYPE 173 130 70
'LRRFIP2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.291 (Fisher's exact test), Q value = 0.62

Table S19817.  Gene #1883: 'LRRFIP2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
LRRFIP2 MUTATED 1 3 5 7
LRRFIP2 WILD-TYPE 111 93 87 179
'LRRFIP2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.003 (Fisher's exact test), Q value = 0.049

Table S19818.  Gene #1883: 'LRRFIP2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
LRRFIP2 MUTATED 2 1 5 0 1 0 7
LRRFIP2 WILD-TYPE 58 49 44 40 62 125 92

Figure S4858.  Get High-res Image Gene #1883: 'LRRFIP2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'LRRFIP2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.339 (Fisher's exact test), Q value = 0.67

Table S19819.  Gene #1883: 'LRRFIP2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
LRRFIP2 MUTATED 4 3 0 9
LRRFIP2 WILD-TYPE 126 75 68 187
'LRRFIP2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 3e-05 (Fisher's exact test), Q value = 0.0022

Table S19820.  Gene #1883: 'LRRFIP2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
LRRFIP2 MUTATED 1 3 4 0 8 0 0 0 0
LRRFIP2 WILD-TYPE 39 59 24 80 61 48 43 28 74

Figure S4859.  Get High-res Image Gene #1883: 'LRRFIP2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'LRRFIP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00793 (Fisher's exact test), Q value = 0.083

Table S19821.  Gene #1883: 'LRRFIP2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
LRRFIP2 MUTATED 0 0 1 3
LRRFIP2 WILD-TYPE 33 31 26 16

Figure S4860.  Get High-res Image Gene #1883: 'LRRFIP2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'LRRFIP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.87 (Fisher's exact test), Q value = 1

Table S19822.  Gene #1883: 'LRRFIP2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
LRRFIP2 MUTATED 3 0 1 0
LRRFIP2 WILD-TYPE 51 10 23 22
'SEZ6L MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.158 (Fisher's exact test), Q value = 0.45

Table S19823.  Gene #1884: 'SEZ6L MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
SEZ6L MUTATED 4 1 1 3
SEZ6L WILD-TYPE 42 57 63 40
'SEZ6L MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.34 (Fisher's exact test), Q value = 0.67

Table S19824.  Gene #1884: 'SEZ6L MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
SEZ6L MUTATED 4 2 3
SEZ6L WILD-TYPE 47 81 74
'SEZ6L MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0143 (Fisher's exact test), Q value = 0.12

Table S19825.  Gene #1884: 'SEZ6L MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
SEZ6L MUTATED 14 4 1 1
SEZ6L WILD-TYPE 164 179 100 19

Figure S4861.  Get High-res Image Gene #1884: 'SEZ6L MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'SEZ6L MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.507 (Fisher's exact test), Q value = 0.83

Table S19826.  Gene #1884: 'SEZ6L MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
SEZ6L MUTATED 3 2 6
SEZ6L WILD-TYPE 84 78 94
'SEZ6L MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.306 (Fisher's exact test), Q value = 0.64

Table S19827.  Gene #1884: 'SEZ6L MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
SEZ6L MUTATED 6 5 4
SEZ6L WILD-TYPE 83 155 134
'SEZ6L MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.649 (Fisher's exact test), Q value = 0.94

Table S19828.  Gene #1884: 'SEZ6L MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
SEZ6L MUTATED 7 4 4
SEZ6L WILD-TYPE 175 129 68
'SEZ6L MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S19829.  Gene #1884: 'SEZ6L MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
SEZ6L MUTATED 4 4 4 8
SEZ6L WILD-TYPE 108 92 88 178
'SEZ6L MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.652 (Fisher's exact test), Q value = 0.94

Table S19830.  Gene #1884: 'SEZ6L MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
SEZ6L MUTATED 2 3 4 1 1 4 5
SEZ6L WILD-TYPE 58 47 45 39 62 121 94
'SEZ6L MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.426 (Fisher's exact test), Q value = 0.75

Table S19831.  Gene #1884: 'SEZ6L MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
SEZ6L MUTATED 8 2 1 8
SEZ6L WILD-TYPE 122 76 67 188
'SEZ6L MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.268 (Fisher's exact test), Q value = 0.59

Table S19832.  Gene #1884: 'SEZ6L MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
SEZ6L MUTATED 3 3 2 2 6 1 0 0 2
SEZ6L WILD-TYPE 37 59 26 78 63 47 43 28 72
'SEZ6L MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0969 (Fisher's exact test), Q value = 0.34

Table S19833.  Gene #1884: 'SEZ6L MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
SEZ6L MUTATED 2 0 0 2
SEZ6L WILD-TYPE 31 31 27 17
'SEZ6L MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.869 (Fisher's exact test), Q value = 1

Table S19834.  Gene #1884: 'SEZ6L MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
SEZ6L MUTATED 3 0 1 0
SEZ6L WILD-TYPE 51 10 23 22
'ENTHD1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.032 (Fisher's exact test), Q value = 0.18

Table S19835.  Gene #1885: 'ENTHD1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ENTHD1 MUTATED 9 1 1 0
ENTHD1 WILD-TYPE 169 182 100 20

Figure S4862.  Get High-res Image Gene #1885: 'ENTHD1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ENTHD1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0374 (Fisher's exact test), Q value = 0.2

Table S19836.  Gene #1885: 'ENTHD1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ENTHD1 MUTATED 6 0 3
ENTHD1 WILD-TYPE 81 80 97

Figure S4863.  Get High-res Image Gene #1885: 'ENTHD1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'ENTHD1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.659 (Fisher's exact test), Q value = 0.95

Table S19837.  Gene #1885: 'ENTHD1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ENTHD1 MUTATED 2 3 5
ENTHD1 WILD-TYPE 87 157 133
'ENTHD1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.695 (Fisher's exact test), Q value = 0.97

Table S19838.  Gene #1885: 'ENTHD1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ENTHD1 MUTATED 6 2 2
ENTHD1 WILD-TYPE 176 131 70
'ENTHD1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.116 (Fisher's exact test), Q value = 0.38

Table S19839.  Gene #1885: 'ENTHD1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ENTHD1 MUTATED 1 4 4 2
ENTHD1 WILD-TYPE 111 92 88 184
'ENTHD1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0136 (Fisher's exact test), Q value = 0.11

Table S19840.  Gene #1885: 'ENTHD1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ENTHD1 MUTATED 1 2 4 0 3 1 0
ENTHD1 WILD-TYPE 59 48 45 40 60 124 99

Figure S4864.  Get High-res Image Gene #1885: 'ENTHD1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ENTHD1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.897 (Fisher's exact test), Q value = 1

Table S19841.  Gene #1885: 'ENTHD1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ENTHD1 MUTATED 4 2 1 4
ENTHD1 WILD-TYPE 126 76 67 192
'ENTHD1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.276 (Fisher's exact test), Q value = 0.6

Table S19842.  Gene #1885: 'ENTHD1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ENTHD1 MUTATED 1 5 0 2 2 0 0 0 1
ENTHD1 WILD-TYPE 39 57 28 78 67 48 43 28 73
'NEDD9 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00827 (Fisher's exact test), Q value = 0.085

Table S19843.  Gene #1886: 'NEDD9 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
NEDD9 MUTATED 3 0 0 3
NEDD9 WILD-TYPE 43 58 64 40

Figure S4865.  Get High-res Image Gene #1886: 'NEDD9 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'NEDD9 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0719 (Fisher's exact test), Q value = 0.29

Table S19844.  Gene #1886: 'NEDD9 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
NEDD9 MUTATED 4 1 1
NEDD9 WILD-TYPE 47 82 76
'NEDD9 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00033 (Fisher's exact test), Q value = 0.012

Table S19845.  Gene #1886: 'NEDD9 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
NEDD9 MUTATED 12 0 1 0
NEDD9 WILD-TYPE 166 183 100 20

Figure S4866.  Get High-res Image Gene #1886: 'NEDD9 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'NEDD9 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.124 (Fisher's exact test), Q value = 0.39

Table S19846.  Gene #1886: 'NEDD9 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
NEDD9 MUTATED 2 0 5
NEDD9 WILD-TYPE 85 80 95
'NEDD9 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.601 (Fisher's exact test), Q value = 0.9

Table S19847.  Gene #1886: 'NEDD9 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
NEDD9 MUTATED 1 4 5
NEDD9 WILD-TYPE 88 156 133
'NEDD9 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.636 (Fisher's exact test), Q value = 0.93

Table S19848.  Gene #1886: 'NEDD9 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
NEDD9 MUTATED 4 5 1
NEDD9 WILD-TYPE 178 128 71
'NEDD9 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.146 (Fisher's exact test), Q value = 0.43

Table S19849.  Gene #1886: 'NEDD9 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
NEDD9 MUTATED 0 4 3 6
NEDD9 WILD-TYPE 112 92 89 180
'NEDD9 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00636 (Fisher's exact test), Q value = 0.073

Table S19850.  Gene #1886: 'NEDD9 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
NEDD9 MUTATED 1 1 5 0 1 0 5
NEDD9 WILD-TYPE 59 49 44 40 62 125 94

Figure S4867.  Get High-res Image Gene #1886: 'NEDD9 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'NEDD9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.215 (Fisher's exact test), Q value = 0.53

Table S19851.  Gene #1886: 'NEDD9 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
NEDD9 MUTATED 3 1 0 9
NEDD9 WILD-TYPE 127 77 68 187
'NEDD9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0425 (Fisher's exact test), Q value = 0.22

Table S19852.  Gene #1886: 'NEDD9 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
NEDD9 MUTATED 1 1 2 0 5 0 1 2 1
NEDD9 WILD-TYPE 39 61 26 80 64 48 42 26 73

Figure S4868.  Get High-res Image Gene #1886: 'NEDD9 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'GDF6 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0177 (Fisher's exact test), Q value = 0.13

Table S19853.  Gene #1887: 'GDF6 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
GDF6 MUTATED 3 0 0 0
GDF6 WILD-TYPE 43 58 64 43

Figure S4869.  Get High-res Image Gene #1887: 'GDF6 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'GDF6 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.462 (Fisher's exact test), Q value = 0.79

Table S19854.  Gene #1887: 'GDF6 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
GDF6 MUTATED 1 2 0
GDF6 WILD-TYPE 50 81 77
'GDF6 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S19855.  Gene #1887: 'GDF6 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
GDF6 MUTATED 3 3 1 0
GDF6 WILD-TYPE 175 180 100 20
'GDF6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.392 (Fisher's exact test), Q value = 0.72

Table S19856.  Gene #1887: 'GDF6 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
GDF6 MUTATED 1 0 3
GDF6 WILD-TYPE 86 80 97
'GDF6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S19857.  Gene #1887: 'GDF6 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
GDF6 MUTATED 1 2 2
GDF6 WILD-TYPE 88 158 136
'GDF6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S19858.  Gene #1887: 'GDF6 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
GDF6 MUTATED 2 2 1
GDF6 WILD-TYPE 180 131 71
'GDF6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.351 (Fisher's exact test), Q value = 0.68

Table S19859.  Gene #1887: 'GDF6 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
GDF6 MUTATED 1 3 0 3
GDF6 WILD-TYPE 111 93 92 183
'GDF6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.217 (Fisher's exact test), Q value = 0.53

Table S19860.  Gene #1887: 'GDF6 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
GDF6 MUTATED 0 3 1 0 0 2 1
GDF6 WILD-TYPE 60 47 48 40 63 123 98
'GDF6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.496 (Fisher's exact test), Q value = 0.82

Table S19861.  Gene #1887: 'GDF6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
GDF6 MUTATED 3 0 0 4
GDF6 WILD-TYPE 127 78 68 192
'GDF6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.574 (Fisher's exact test), Q value = 0.88

Table S19862.  Gene #1887: 'GDF6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
GDF6 MUTATED 0 0 1 2 2 0 0 1 1
GDF6 WILD-TYPE 40 62 27 78 67 48 43 27 73
'ZNF259 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.276 (Fisher's exact test), Q value = 0.6

Table S19863.  Gene #1888: 'ZNF259 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ZNF259 MUTATED 3 0 0 0
ZNF259 WILD-TYPE 175 183 101 20
'ZNF259 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.692 (Fisher's exact test), Q value = 0.97

Table S19864.  Gene #1888: 'ZNF259 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ZNF259 MUTATED 0 1 0 2
ZNF259 WILD-TYPE 112 95 92 184
'ZNF259 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.566 (Fisher's exact test), Q value = 0.87

Table S19865.  Gene #1888: 'ZNF259 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ZNF259 MUTATED 1 0 1 0 0 1 0
ZNF259 WILD-TYPE 59 50 48 40 63 124 99
'ZNF259 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.39 (Fisher's exact test), Q value = 0.72

Table S19866.  Gene #1888: 'ZNF259 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ZNF259 MUTATED 0 0 0 3
ZNF259 WILD-TYPE 130 78 68 193
'ZNF259 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.672 (Fisher's exact test), Q value = 0.95

Table S19867.  Gene #1888: 'ZNF259 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ZNF259 MUTATED 0 0 0 1 2 0 0 0 0
ZNF259 WILD-TYPE 40 62 28 79 67 48 43 28 74
'SRL MUTATION STATUS' versus 'CN_CNMF'

P value = 0.079 (Fisher's exact test), Q value = 0.3

Table S19868.  Gene #1889: 'SRL MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
SRL MUTATED 8 1 3 0
SRL WILD-TYPE 170 182 98 20
'SRL MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.504 (Fisher's exact test), Q value = 0.83

Table S19869.  Gene #1889: 'SRL MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
SRL MUTATED 3 2 6
SRL WILD-TYPE 84 78 94
'SRL MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.318 (Fisher's exact test), Q value = 0.65

Table S19870.  Gene #1889: 'SRL MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
SRL MUTATED 1 3 6
SRL WILD-TYPE 88 157 132
'SRL MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.765 (Fisher's exact test), Q value = 1

Table S19871.  Gene #1889: 'SRL MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
SRL MUTATED 6 3 1
SRL WILD-TYPE 176 130 71
'SRL MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.168 (Fisher's exact test), Q value = 0.46

Table S19872.  Gene #1889: 'SRL MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
SRL MUTATED 2 5 3 2
SRL WILD-TYPE 110 91 89 184
'SRL MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0576 (Fisher's exact test), Q value = 0.26

Table S19873.  Gene #1889: 'SRL MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
SRL MUTATED 1 2 4 0 3 1 1
SRL WILD-TYPE 59 48 45 40 60 124 98
'SRL MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.295 (Fisher's exact test), Q value = 0.62

Table S19874.  Gene #1889: 'SRL MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
SRL MUTATED 5 2 2 2
SRL WILD-TYPE 125 76 66 194
'SRL MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.417 (Fisher's exact test), Q value = 0.74

Table S19875.  Gene #1889: 'SRL MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
SRL MUTATED 1 2 2 3 2 0 1 0 0
SRL WILD-TYPE 39 60 26 77 67 48 42 28 74
'SRL MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.703 (Fisher's exact test), Q value = 0.98

Table S19876.  Gene #1889: 'SRL MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
SRL MUTATED 2 1 0 0
SRL WILD-TYPE 31 30 27 19
'SRL MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.693 (Fisher's exact test), Q value = 0.97

Table S19877.  Gene #1889: 'SRL MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
SRL MUTATED 1 0 1 1
SRL WILD-TYPE 53 10 23 21
'G3BP1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00851 (Fisher's exact test), Q value = 0.086

Table S19878.  Gene #1890: 'G3BP1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
G3BP1 MUTATED 3 0 0 3
G3BP1 WILD-TYPE 43 58 64 40

Figure S4870.  Get High-res Image Gene #1890: 'G3BP1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'G3BP1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00175 (Fisher's exact test), Q value = 0.035

Table S19879.  Gene #1890: 'G3BP1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
G3BP1 MUTATED 5 0 1
G3BP1 WILD-TYPE 46 83 76

Figure S4871.  Get High-res Image Gene #1890: 'G3BP1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'G3BP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 2e-04 (Fisher's exact test), Q value = 0.0083

Table S19880.  Gene #1890: 'G3BP1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
G3BP1 MUTATED 12 0 0 0
G3BP1 WILD-TYPE 166 183 101 20

Figure S4872.  Get High-res Image Gene #1890: 'G3BP1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'G3BP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.289 (Fisher's exact test), Q value = 0.62

Table S19881.  Gene #1890: 'G3BP1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
G3BP1 MUTATED 3 0 3
G3BP1 WILD-TYPE 84 80 97
'G3BP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.318 (Fisher's exact test), Q value = 0.65

Table S19882.  Gene #1890: 'G3BP1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
G3BP1 MUTATED 1 3 6
G3BP1 WILD-TYPE 88 157 132
'G3BP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.583 (Fisher's exact test), Q value = 0.89

Table S19883.  Gene #1890: 'G3BP1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
G3BP1 MUTATED 4 3 3
G3BP1 WILD-TYPE 178 130 69
'G3BP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.192 (Fisher's exact test), Q value = 0.5

Table S19884.  Gene #1890: 'G3BP1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
G3BP1 MUTATED 0 3 3 6
G3BP1 WILD-TYPE 112 93 89 180
'G3BP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0189 (Fisher's exact test), Q value = 0.14

Table S19885.  Gene #1890: 'G3BP1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
G3BP1 MUTATED 1 1 4 0 1 0 5
G3BP1 WILD-TYPE 59 49 45 40 62 125 94

Figure S4873.  Get High-res Image Gene #1890: 'G3BP1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'G3BP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.649 (Fisher's exact test), Q value = 0.94

Table S19886.  Gene #1890: 'G3BP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
G3BP1 MUTATED 3 2 0 6
G3BP1 WILD-TYPE 127 76 68 190
'G3BP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00087 (Fisher's exact test), Q value = 0.022

Table S19887.  Gene #1890: 'G3BP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
G3BP1 MUTATED 0 2 0 0 8 0 0 0 1
G3BP1 WILD-TYPE 40 60 28 80 61 48 43 28 73

Figure S4874.  Get High-res Image Gene #1890: 'G3BP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'CYP4F11 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00616 (Fisher's exact test), Q value = 0.072

Table S19888.  Gene #1891: 'CYP4F11 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
CYP4F11 MUTATED 6 0 0 1
CYP4F11 WILD-TYPE 172 183 101 19

Figure S4875.  Get High-res Image Gene #1891: 'CYP4F11 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'CYP4F11 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.384 (Fisher's exact test), Q value = 0.71

Table S19889.  Gene #1891: 'CYP4F11 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
CYP4F11 MUTATED 2 0 3
CYP4F11 WILD-TYPE 85 80 97
'CYP4F11 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0644 (Fisher's exact test), Q value = 0.28

Table S19890.  Gene #1891: 'CYP4F11 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
CYP4F11 MUTATED 2 0 4
CYP4F11 WILD-TYPE 87 160 134
'CYP4F11 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.758 (Fisher's exact test), Q value = 1

Table S19891.  Gene #1891: 'CYP4F11 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
CYP4F11 MUTATED 4 1 1
CYP4F11 WILD-TYPE 178 132 71
'CYP4F11 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.168 (Fisher's exact test), Q value = 0.46

Table S19892.  Gene #1891: 'CYP4F11 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
CYP4F11 MUTATED 0 2 3 2
CYP4F11 WILD-TYPE 112 94 89 184
'CYP4F11 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0175 (Fisher's exact test), Q value = 0.13

Table S19893.  Gene #1891: 'CYP4F11 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
CYP4F11 MUTATED 0 0 4 1 0 1 1
CYP4F11 WILD-TYPE 60 50 45 39 63 124 98

Figure S4876.  Get High-res Image Gene #1891: 'CYP4F11 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CYP4F11 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0472 (Fisher's exact test), Q value = 0.23

Table S19894.  Gene #1891: 'CYP4F11 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
CYP4F11 MUTATED 4 1 1 0
CYP4F11 WILD-TYPE 126 77 67 196

Figure S4877.  Get High-res Image Gene #1891: 'CYP4F11 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'CYP4F11 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.23 (Fisher's exact test), Q value = 0.55

Table S19895.  Gene #1891: 'CYP4F11 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
CYP4F11 MUTATED 2 2 0 0 1 1 0 0 0
CYP4F11 WILD-TYPE 38 60 28 80 68 47 43 28 74
'CYP4F11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.135 (Fisher's exact test), Q value = 0.41

Table S19896.  Gene #1891: 'CYP4F11 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
CYP4F11 MUTATED 1 0 0 2
CYP4F11 WILD-TYPE 32 31 27 17
'CYP4F11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.561 (Fisher's exact test), Q value = 0.87

Table S19897.  Gene #1891: 'CYP4F11 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
CYP4F11 MUTATED 3 0 0 0
CYP4F11 WILD-TYPE 51 10 24 22
'UBE3C MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.041 (Fisher's exact test), Q value = 0.21

Table S19898.  Gene #1892: 'UBE3C MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
UBE3C MUTATED 2 0 1 4
UBE3C WILD-TYPE 44 58 63 39

Figure S4878.  Get High-res Image Gene #1892: 'UBE3C MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'UBE3C MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.307 (Fisher's exact test), Q value = 0.64

Table S19899.  Gene #1892: 'UBE3C MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
UBE3C MUTATED 3 1 3
UBE3C WILD-TYPE 48 82 74
'UBE3C MUTATION STATUS' versus 'CN_CNMF'

P value = 0.202 (Fisher's exact test), Q value = 0.51

Table S19900.  Gene #1892: 'UBE3C MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
UBE3C MUTATED 11 4 3 1
UBE3C WILD-TYPE 167 179 98 19
'UBE3C MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.397 (Fisher's exact test), Q value = 0.72

Table S19901.  Gene #1892: 'UBE3C MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
UBE3C MUTATED 6 2 4
UBE3C WILD-TYPE 81 78 96
'UBE3C MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.348 (Fisher's exact test), Q value = 0.68

Table S19902.  Gene #1892: 'UBE3C MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
UBE3C MUTATED 3 5 9
UBE3C WILD-TYPE 86 155 129
'UBE3C MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.852 (Fisher's exact test), Q value = 1

Table S19903.  Gene #1892: 'UBE3C MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
UBE3C MUTATED 9 6 2
UBE3C WILD-TYPE 173 127 70
'UBE3C MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.94 (Fisher's exact test), Q value = 1

Table S19904.  Gene #1892: 'UBE3C MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
UBE3C MUTATED 5 3 4 7
UBE3C WILD-TYPE 107 93 88 179
'UBE3C MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.226 (Fisher's exact test), Q value = 0.54

Table S19905.  Gene #1892: 'UBE3C MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
UBE3C MUTATED 4 1 3 2 3 1 5
UBE3C WILD-TYPE 56 49 46 38 60 124 94
'UBE3C MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.576 (Fisher's exact test), Q value = 0.88

Table S19906.  Gene #1892: 'UBE3C MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
UBE3C MUTATED 6 4 1 6
UBE3C WILD-TYPE 124 74 67 190
'UBE3C MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00853 (Fisher's exact test), Q value = 0.086

Table S19907.  Gene #1892: 'UBE3C MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
UBE3C MUTATED 0 6 3 0 3 1 3 0 1
UBE3C WILD-TYPE 40 56 25 80 66 47 40 28 73

Figure S4879.  Get High-res Image Gene #1892: 'UBE3C MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'UBE3C MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.761 (Fisher's exact test), Q value = 1

Table S19908.  Gene #1892: 'UBE3C MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
UBE3C MUTATED 1 3 1 1
UBE3C WILD-TYPE 32 28 26 18
'UBE3C MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S19909.  Gene #1892: 'UBE3C MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
UBE3C MUTATED 4 0 1 1
UBE3C WILD-TYPE 50 10 23 21
'LIPH MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0663 (Fisher's exact test), Q value = 0.28

Table S19910.  Gene #1893: 'LIPH MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
LIPH MUTATED 1 0 0 2
LIPH WILD-TYPE 45 58 64 41
'LIPH MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S19911.  Gene #1893: 'LIPH MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
LIPH MUTATED 1 1 1
LIPH WILD-TYPE 50 82 76
'LIPH MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0572 (Fisher's exact test), Q value = 0.26

Table S19912.  Gene #1893: 'LIPH MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
LIPH MUTATED 8 2 0 0
LIPH WILD-TYPE 170 181 101 20
'LIPH MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S19913.  Gene #1893: 'LIPH MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
LIPH MUTATED 2 2 3
LIPH WILD-TYPE 85 78 97
'LIPH MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.513 (Fisher's exact test), Q value = 0.83

Table S19914.  Gene #1893: 'LIPH MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
LIPH MUTATED 1 3 5
LIPH WILD-TYPE 88 157 133
'LIPH MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.267 (Fisher's exact test), Q value = 0.59

Table S19915.  Gene #1893: 'LIPH MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
LIPH MUTATED 2 5 2
LIPH WILD-TYPE 180 128 70
'LIPH MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.497 (Fisher's exact test), Q value = 0.82

Table S19916.  Gene #1893: 'LIPH MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
LIPH MUTATED 2 4 1 3
LIPH WILD-TYPE 110 92 91 183
'LIPH MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.202 (Fisher's exact test), Q value = 0.51

Table S19917.  Gene #1893: 'LIPH MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
LIPH MUTATED 2 2 2 1 1 0 2
LIPH WILD-TYPE 58 48 47 39 62 125 97
'LIPH MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S19918.  Gene #1893: 'LIPH MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
LIPH MUTATED 3 2 1 4
LIPH WILD-TYPE 127 76 67 192
'LIPH MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0266 (Fisher's exact test), Q value = 0.17

Table S19919.  Gene #1893: 'LIPH MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
LIPH MUTATED 3 1 1 0 4 0 1 0 0
LIPH WILD-TYPE 37 61 27 80 65 48 42 28 74

Figure S4880.  Get High-res Image Gene #1893: 'LIPH MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'GLT8D1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.628 (Fisher's exact test), Q value = 0.92

Table S19920.  Gene #1894: 'GLT8D1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
GLT8D1 MUTATED 1 1 0 1
GLT8D1 WILD-TYPE 45 57 64 42
'GLT8D1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.12 (Fisher's exact test), Q value = 0.39

Table S19921.  Gene #1894: 'GLT8D1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
GLT8D1 MUTATED 0 3 0
GLT8D1 WILD-TYPE 51 80 77
'GLT8D1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.127 (Fisher's exact test), Q value = 0.4

Table S19922.  Gene #1894: 'GLT8D1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
GLT8D1 MUTATED 7 1 1 0
GLT8D1 WILD-TYPE 171 182 100 20
'GLT8D1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.254 (Fisher's exact test), Q value = 0.58

Table S19923.  Gene #1894: 'GLT8D1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
GLT8D1 MUTATED 2 0 4
GLT8D1 WILD-TYPE 85 80 96
'GLT8D1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.332 (Fisher's exact test), Q value = 0.66

Table S19924.  Gene #1894: 'GLT8D1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
GLT8D1 MUTATED 1 1 4
GLT8D1 WILD-TYPE 88 159 134
'GLT8D1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.864 (Fisher's exact test), Q value = 1

Table S19925.  Gene #1894: 'GLT8D1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
GLT8D1 MUTATED 2 3 1
GLT8D1 WILD-TYPE 180 130 71
'GLT8D1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.395 (Fisher's exact test), Q value = 0.72

Table S19926.  Gene #1894: 'GLT8D1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
GLT8D1 MUTATED 1 3 3 2
GLT8D1 WILD-TYPE 111 93 89 184
'GLT8D1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0355 (Fisher's exact test), Q value = 0.2

Table S19927.  Gene #1894: 'GLT8D1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
GLT8D1 MUTATED 0 2 4 0 0 2 1
GLT8D1 WILD-TYPE 60 48 45 40 63 123 98

Figure S4881.  Get High-res Image Gene #1894: 'GLT8D1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'GLT8D1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.696 (Fisher's exact test), Q value = 0.97

Table S19928.  Gene #1894: 'GLT8D1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
GLT8D1 MUTATED 2 2 0 5
GLT8D1 WILD-TYPE 128 76 68 191
'GLT8D1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.784 (Fisher's exact test), Q value = 1

Table S19929.  Gene #1894: 'GLT8D1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
GLT8D1 MUTATED 0 3 1 2 1 1 0 0 1
GLT8D1 WILD-TYPE 40 59 27 78 68 47 43 28 73
'C20ORF43 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.037 (Fisher's exact test), Q value = 0.2

Table S19930.  Gene #1895: 'C20ORF43 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
C20ORF43 MUTATED 3 0 0 1
C20ORF43 WILD-TYPE 175 183 101 19

Figure S4882.  Get High-res Image Gene #1895: 'C20ORF43 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'C20ORF43 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.513 (Fisher's exact test), Q value = 0.83

Table S19931.  Gene #1895: 'C20ORF43 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
C20ORF43 MUTATED 2 0 1
C20ORF43 WILD-TYPE 85 80 99
'C20ORF43 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.764 (Fisher's exact test), Q value = 1

Table S19932.  Gene #1895: 'C20ORF43 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
C20ORF43 MUTATED 0 1 1 2
C20ORF43 WILD-TYPE 112 95 91 184
'C20ORF43 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.225 (Fisher's exact test), Q value = 0.54

Table S19933.  Gene #1895: 'C20ORF43 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
C20ORF43 MUTATED 0 0 1 1 0 0 2
C20ORF43 WILD-TYPE 60 50 48 39 63 125 97
'C20ORF43 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.746 (Fisher's exact test), Q value = 1

Table S19934.  Gene #1895: 'C20ORF43 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
C20ORF43 MUTATED 2 0 0 2
C20ORF43 WILD-TYPE 128 78 68 194
'C20ORF43 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0593 (Fisher's exact test), Q value = 0.27

Table S19935.  Gene #1895: 'C20ORF43 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
C20ORF43 MUTATED 2 0 1 0 0 0 0 0 1
C20ORF43 WILD-TYPE 38 62 27 80 69 48 43 28 73
'GOLIM4 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00415 (Fisher's exact test), Q value = 0.059

Table S19936.  Gene #1896: 'GOLIM4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
GOLIM4 MUTATED 3 0 0 4
GOLIM4 WILD-TYPE 43 58 64 39

Figure S4883.  Get High-res Image Gene #1896: 'GOLIM4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'GOLIM4 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.123 (Fisher's exact test), Q value = 0.39

Table S19937.  Gene #1896: 'GOLIM4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
GOLIM4 MUTATED 4 2 1
GOLIM4 WILD-TYPE 47 81 76
'GOLIM4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0291 (Fisher's exact test), Q value = 0.17

Table S19938.  Gene #1896: 'GOLIM4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
GOLIM4 MUTATED 9 2 0 0
GOLIM4 WILD-TYPE 169 181 101 20

Figure S4884.  Get High-res Image Gene #1896: 'GOLIM4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'GOLIM4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.74 (Fisher's exact test), Q value = 1

Table S19939.  Gene #1896: 'GOLIM4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
GOLIM4 MUTATED 2 2 1
GOLIM4 WILD-TYPE 85 78 99
'GOLIM4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.658 (Fisher's exact test), Q value = 0.94

Table S19940.  Gene #1896: 'GOLIM4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
GOLIM4 MUTATED 2 3 5
GOLIM4 WILD-TYPE 87 157 133
'GOLIM4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S19941.  Gene #1896: 'GOLIM4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
GOLIM4 MUTATED 5 3 2
GOLIM4 WILD-TYPE 177 130 70
'GOLIM4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.43 (Fisher's exact test), Q value = 0.76

Table S19942.  Gene #1896: 'GOLIM4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
GOLIM4 MUTATED 1 1 2 7
GOLIM4 WILD-TYPE 111 95 90 179
'GOLIM4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.131 (Fisher's exact test), Q value = 0.4

Table S19943.  Gene #1896: 'GOLIM4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
GOLIM4 MUTATED 1 0 2 0 1 1 6
GOLIM4 WILD-TYPE 59 50 47 40 62 124 93
'GOLIM4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.399 (Fisher's exact test), Q value = 0.72

Table S19944.  Gene #1896: 'GOLIM4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
GOLIM4 MUTATED 1 1 1 7
GOLIM4 WILD-TYPE 129 77 67 189
'GOLIM4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0599 (Fisher's exact test), Q value = 0.27

Table S19945.  Gene #1896: 'GOLIM4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
GOLIM4 MUTATED 0 2 1 0 5 0 0 1 1
GOLIM4 WILD-TYPE 40 60 27 80 64 48 43 27 73
'MTMR1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.258 (Fisher's exact test), Q value = 0.58

Table S19946.  Gene #1897: 'MTMR1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
MTMR1 MUTATED 2 0 1 2
MTMR1 WILD-TYPE 44 58 63 41
'MTMR1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0467 (Fisher's exact test), Q value = 0.23

Table S19947.  Gene #1897: 'MTMR1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
MTMR1 MUTATED 3 0 2
MTMR1 WILD-TYPE 48 83 75

Figure S4885.  Get High-res Image Gene #1897: 'MTMR1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'MTMR1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0292 (Fisher's exact test), Q value = 0.17

Table S19948.  Gene #1897: 'MTMR1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
MTMR1 MUTATED 9 1 2 1
MTMR1 WILD-TYPE 169 182 99 19

Figure S4886.  Get High-res Image Gene #1897: 'MTMR1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'MTMR1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.496 (Fisher's exact test), Q value = 0.82

Table S19949.  Gene #1897: 'MTMR1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
MTMR1 MUTATED 4 1 3
MTMR1 WILD-TYPE 83 79 97
'MTMR1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.349 (Fisher's exact test), Q value = 0.68

Table S19950.  Gene #1897: 'MTMR1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
MTMR1 MUTATED 3 2 5
MTMR1 WILD-TYPE 86 158 133
'MTMR1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.691 (Fisher's exact test), Q value = 0.97

Table S19951.  Gene #1897: 'MTMR1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
MTMR1 MUTATED 6 2 2
MTMR1 WILD-TYPE 176 131 70
'MTMR1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.406 (Fisher's exact test), Q value = 0.73

Table S19952.  Gene #1897: 'MTMR1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
MTMR1 MUTATED 1 2 4 6
MTMR1 WILD-TYPE 111 94 88 180
'MTMR1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.197 (Fisher's exact test), Q value = 0.5

Table S19953.  Gene #1897: 'MTMR1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
MTMR1 MUTATED 1 0 4 0 2 2 4
MTMR1 WILD-TYPE 59 50 45 40 61 123 95
'MTMR1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.598 (Fisher's exact test), Q value = 0.9

Table S19954.  Gene #1897: 'MTMR1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
MTMR1 MUTATED 4 2 0 6
MTMR1 WILD-TYPE 126 76 68 190
'MTMR1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.436 (Fisher's exact test), Q value = 0.76

Table S19955.  Gene #1897: 'MTMR1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
MTMR1 MUTATED 0 2 1 2 5 1 0 0 1
MTMR1 WILD-TYPE 40 60 27 78 64 47 43 28 73
'TRPM6 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0651 (Fisher's exact test), Q value = 0.28

Table S19956.  Gene #1898: 'TRPM6 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
TRPM6 MUTATED 3 1 1 5
TRPM6 WILD-TYPE 43 57 63 38
'TRPM6 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0399 (Fisher's exact test), Q value = 0.21

Table S19957.  Gene #1898: 'TRPM6 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
TRPM6 MUTATED 6 2 2
TRPM6 WILD-TYPE 45 81 75

Figure S4887.  Get High-res Image Gene #1898: 'TRPM6 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'TRPM6 MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S19958.  Gene #1898: 'TRPM6 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
TRPM6 MUTATED 24 3 1 2
TRPM6 WILD-TYPE 154 180 100 18

Figure S4888.  Get High-res Image Gene #1898: 'TRPM6 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'TRPM6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.182 (Fisher's exact test), Q value = 0.48

Table S19959.  Gene #1898: 'TRPM6 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
TRPM6 MUTATED 7 2 9
TRPM6 WILD-TYPE 80 78 91
'TRPM6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.282 (Fisher's exact test), Q value = 0.61

Table S19960.  Gene #1898: 'TRPM6 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
TRPM6 MUTATED 3 11 12
TRPM6 WILD-TYPE 86 149 126
'TRPM6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.095 (Fisher's exact test), Q value = 0.34

Table S19961.  Gene #1898: 'TRPM6 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
TRPM6 MUTATED 13 12 1
TRPM6 WILD-TYPE 169 121 71
'TRPM6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0621 (Fisher's exact test), Q value = 0.27

Table S19962.  Gene #1898: 'TRPM6 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
TRPM6 MUTATED 2 10 6 12
TRPM6 WILD-TYPE 110 86 86 174
'TRPM6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0014 (Fisher's exact test), Q value = 0.031

Table S19963.  Gene #1898: 'TRPM6 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
TRPM6 MUTATED 3 4 8 1 1 2 11
TRPM6 WILD-TYPE 57 46 41 39 62 123 88

Figure S4889.  Get High-res Image Gene #1898: 'TRPM6 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'TRPM6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.316 (Fisher's exact test), Q value = 0.64

Table S19964.  Gene #1898: 'TRPM6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
TRPM6 MUTATED 8 4 1 15
TRPM6 WILD-TYPE 122 74 67 181
'TRPM6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0129 (Fisher's exact test), Q value = 0.11

Table S19965.  Gene #1898: 'TRPM6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
TRPM6 MUTATED 5 4 1 2 11 2 1 0 2
TRPM6 WILD-TYPE 35 58 27 78 58 46 42 28 72

Figure S4890.  Get High-res Image Gene #1898: 'TRPM6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'TRPM6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0918 (Fisher's exact test), Q value = 0.33

Table S19966.  Gene #1898: 'TRPM6 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
TRPM6 MUTATED 2 0 1 3
TRPM6 WILD-TYPE 31 31 26 16
'TRPM6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.683 (Fisher's exact test), Q value = 0.96

Table S19967.  Gene #1898: 'TRPM6 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
TRPM6 MUTATED 4 0 2 0
TRPM6 WILD-TYPE 50 10 22 22
'GABRA4 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.389 (Fisher's exact test), Q value = 0.72

Table S19968.  Gene #1899: 'GABRA4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
GABRA4 MUTATED 2 1 1 3
GABRA4 WILD-TYPE 44 57 63 40
'GABRA4 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S19969.  Gene #1899: 'GABRA4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
GABRA4 MUTATED 1 3 3
GABRA4 WILD-TYPE 50 80 74
'GABRA4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0862 (Fisher's exact test), Q value = 0.32

Table S19970.  Gene #1899: 'GABRA4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
GABRA4 MUTATED 8 4 0 1
GABRA4 WILD-TYPE 170 179 101 19
'GABRA4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S19971.  Gene #1899: 'GABRA4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
GABRA4 MUTATED 2 2 2
GABRA4 WILD-TYPE 85 78 98
'GABRA4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.384 (Fisher's exact test), Q value = 0.71

Table S19972.  Gene #1899: 'GABRA4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
GABRA4 MUTATED 4 4 2
GABRA4 WILD-TYPE 85 156 136
'GABRA4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.209 (Fisher's exact test), Q value = 0.52

Table S19973.  Gene #1899: 'GABRA4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
GABRA4 MUTATED 3 3 4
GABRA4 WILD-TYPE 179 130 68
'GABRA4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.15 (Fisher's exact test), Q value = 0.43

Table S19974.  Gene #1899: 'GABRA4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
GABRA4 MUTATED 2 0 4 7
GABRA4 WILD-TYPE 110 96 88 179
'GABRA4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.773 (Fisher's exact test), Q value = 1

Table S19975.  Gene #1899: 'GABRA4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
GABRA4 MUTATED 1 1 3 0 2 4 2
GABRA4 WILD-TYPE 59 49 46 40 61 121 97
'GABRA4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.621 (Fisher's exact test), Q value = 0.92

Table S19976.  Gene #1899: 'GABRA4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
GABRA4 MUTATED 2 3 1 7
GABRA4 WILD-TYPE 128 75 67 189
'GABRA4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.768 (Fisher's exact test), Q value = 1

Table S19977.  Gene #1899: 'GABRA4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
GABRA4 MUTATED 0 3 1 2 3 0 1 0 3
GABRA4 WILD-TYPE 40 59 27 78 66 48 42 28 71
'GABRA4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0965 (Fisher's exact test), Q value = 0.34

Table S19978.  Gene #1899: 'GABRA4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
GABRA4 MUTATED 2 0 0 2
GABRA4 WILD-TYPE 31 31 27 17
'GABRA4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.767 (Fisher's exact test), Q value = 1

Table S19979.  Gene #1899: 'GABRA4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
GABRA4 MUTATED 3 0 0 1
GABRA4 WILD-TYPE 51 10 24 21
'C17ORF71 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00584 (Fisher's exact test), Q value = 0.069

Table S19980.  Gene #1900: 'C17ORF71 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
C17ORF71 MUTATED 2 0 0 4
C17ORF71 WILD-TYPE 44 58 64 39

Figure S4891.  Get High-res Image Gene #1900: 'C17ORF71 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'C17ORF71 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.241 (Fisher's exact test), Q value = 0.57

Table S19981.  Gene #1900: 'C17ORF71 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
C17ORF71 MUTATED 3 1 2
C17ORF71 WILD-TYPE 48 82 75
'C17ORF71 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.628 (Fisher's exact test), Q value = 0.92

Table S19982.  Gene #1900: 'C17ORF71 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
C17ORF71 MUTATED 6 3 1 0
C17ORF71 WILD-TYPE 172 180 100 20
'C17ORF71 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S19983.  Gene #1900: 'C17ORF71 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
C17ORF71 MUTATED 2 1 2
C17ORF71 WILD-TYPE 85 79 98
'C17ORF71 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S19984.  Gene #1900: 'C17ORF71 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
C17ORF71 MUTATED 2 4 4
C17ORF71 WILD-TYPE 87 156 134
'C17ORF71 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.84 (Fisher's exact test), Q value = 1

Table S19985.  Gene #1900: 'C17ORF71 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
C17ORF71 MUTATED 4 4 2
C17ORF71 WILD-TYPE 178 129 70
'C17ORF71 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.079 (Fisher's exact test), Q value = 0.3

Table S19986.  Gene #1900: 'C17ORF71 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
C17ORF71 MUTATED 0 1 4 6
C17ORF71 WILD-TYPE 112 95 88 180
'C17ORF71 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0753 (Fisher's exact test), Q value = 0.29

Table S19987.  Gene #1900: 'C17ORF71 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
C17ORF71 MUTATED 1 1 0 1 3 0 5
C17ORF71 WILD-TYPE 59 49 49 39 60 125 94
'C17ORF71 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.702 (Fisher's exact test), Q value = 0.97

Table S19988.  Gene #1900: 'C17ORF71 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
C17ORF71 MUTATED 3 2 0 5
C17ORF71 WILD-TYPE 127 76 68 191
'C17ORF71 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0132 (Fisher's exact test), Q value = 0.11

Table S19989.  Gene #1900: 'C17ORF71 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
C17ORF71 MUTATED 3 2 2 0 3 0 0 0 0
C17ORF71 WILD-TYPE 37 60 26 80 66 48 43 28 74

Figure S4892.  Get High-res Image Gene #1900: 'C17ORF71 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'C17ORF71 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.704 (Fisher's exact test), Q value = 0.98

Table S19990.  Gene #1900: 'C17ORF71 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
C17ORF71 MUTATED 2 1 0 0
C17ORF71 WILD-TYPE 31 30 27 19
'C17ORF71 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.56 (Fisher's exact test), Q value = 0.87

Table S19991.  Gene #1900: 'C17ORF71 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
C17ORF71 MUTATED 3 0 0 0
C17ORF71 WILD-TYPE 51 10 24 22
'VCAN MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0624 (Fisher's exact test), Q value = 0.27

Table S19992.  Gene #1901: 'VCAN MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
VCAN MUTATED 5 5 1 6
VCAN WILD-TYPE 41 53 63 37
'VCAN MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.557 (Fisher's exact test), Q value = 0.87

Table S19993.  Gene #1901: 'VCAN MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
VCAN MUTATED 6 6 5
VCAN WILD-TYPE 45 77 72
'VCAN MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0506 (Fisher's exact test), Q value = 0.24

Table S19994.  Gene #1901: 'VCAN MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
VCAN MUTATED 21 13 5 4
VCAN WILD-TYPE 157 170 96 16
'VCAN MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.671 (Fisher's exact test), Q value = 0.95

Table S19995.  Gene #1901: 'VCAN MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
VCAN MUTATED 10 6 9
VCAN WILD-TYPE 77 74 91
'VCAN MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.221 (Fisher's exact test), Q value = 0.53

Table S19996.  Gene #1901: 'VCAN MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
VCAN MUTATED 4 17 14
VCAN WILD-TYPE 85 143 124
'VCAN MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.211 (Fisher's exact test), Q value = 0.52

Table S19997.  Gene #1901: 'VCAN MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
VCAN MUTATED 17 15 3
VCAN WILD-TYPE 165 118 69
'VCAN MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.911 (Fisher's exact test), Q value = 1

Table S19998.  Gene #1901: 'VCAN MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
VCAN MUTATED 8 8 9 17
VCAN WILD-TYPE 104 88 83 169
'VCAN MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.335 (Fisher's exact test), Q value = 0.66

Table S19999.  Gene #1901: 'VCAN MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
VCAN MUTATED 6 5 8 3 3 7 10
VCAN WILD-TYPE 54 45 41 37 60 118 89
'VCAN MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.448 (Fisher's exact test), Q value = 0.77

Table S20000.  Gene #1901: 'VCAN MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
VCAN MUTATED 12 4 4 21
VCAN WILD-TYPE 118 74 64 175
'VCAN MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.46 (Fisher's exact test), Q value = 0.79

Table S20001.  Gene #1901: 'VCAN MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
VCAN MUTATED 4 5 5 6 9 4 4 1 3
VCAN WILD-TYPE 36 57 23 74 60 44 39 27 71
'VCAN MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0614 (Fisher's exact test), Q value = 0.27

Table S20002.  Gene #1901: 'VCAN MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
VCAN MUTATED 2 1 2 5
VCAN WILD-TYPE 31 30 25 14
'VCAN MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.794 (Fisher's exact test), Q value = 1

Table S20003.  Gene #1901: 'VCAN MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
VCAN MUTATED 5 1 3 1
VCAN WILD-TYPE 49 9 21 21
'CDH24 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0272 (Fisher's exact test), Q value = 0.17

Table S20004.  Gene #1902: 'CDH24 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
CDH24 MUTATED 3 0 0 2
CDH24 WILD-TYPE 43 58 64 41

Figure S4893.  Get High-res Image Gene #1902: 'CDH24 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'CDH24 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.253 (Fisher's exact test), Q value = 0.58

Table S20005.  Gene #1902: 'CDH24 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
CDH24 MUTATED 3 1 1
CDH24 WILD-TYPE 48 82 76
'CDH24 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0466 (Fisher's exact test), Q value = 0.23

Table S20006.  Gene #1902: 'CDH24 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
CDH24 MUTATED 9 1 2 0
CDH24 WILD-TYPE 169 182 99 20

Figure S4894.  Get High-res Image Gene #1902: 'CDH24 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'CDH24 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0261 (Fisher's exact test), Q value = 0.16

Table S20007.  Gene #1902: 'CDH24 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
CDH24 MUTATED 1 0 6
CDH24 WILD-TYPE 86 80 94

Figure S4895.  Get High-res Image Gene #1902: 'CDH24 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'CDH24 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.845 (Fisher's exact test), Q value = 1

Table S20008.  Gene #1902: 'CDH24 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
CDH24 MUTATED 3 4 3
CDH24 WILD-TYPE 86 156 135
'CDH24 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.164 (Fisher's exact test), Q value = 0.46

Table S20009.  Gene #1902: 'CDH24 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
CDH24 MUTATED 2 5 3
CDH24 WILD-TYPE 180 128 69
'CDH24 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0251 (Fisher's exact test), Q value = 0.16

Table S20010.  Gene #1902: 'CDH24 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
CDH24 MUTATED 0 6 1 5
CDH24 WILD-TYPE 112 90 91 181

Figure S4896.  Get High-res Image Gene #1902: 'CDH24 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'CDH24 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00609 (Fisher's exact test), Q value = 0.071

Table S20011.  Gene #1902: 'CDH24 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
CDH24 MUTATED 0 3 3 1 0 0 5
CDH24 WILD-TYPE 60 47 46 39 63 125 94

Figure S4897.  Get High-res Image Gene #1902: 'CDH24 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CDH24 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.416 (Fisher's exact test), Q value = 0.74

Table S20012.  Gene #1902: 'CDH24 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
CDH24 MUTATED 5 1 0 6
CDH24 WILD-TYPE 125 77 68 190
'CDH24 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00462 (Fisher's exact test), Q value = 0.062

Table S20013.  Gene #1902: 'CDH24 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
CDH24 MUTATED 5 1 1 0 3 1 0 1 0
CDH24 WILD-TYPE 35 61 27 80 66 47 43 27 74

Figure S4898.  Get High-res Image Gene #1902: 'CDH24 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'SMARCA1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0109 (Fisher's exact test), Q value = 0.1

Table S20014.  Gene #1903: 'SMARCA1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
SMARCA1 MUTATED 2 0 1 5
SMARCA1 WILD-TYPE 44 58 63 38

Figure S4899.  Get High-res Image Gene #1903: 'SMARCA1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'SMARCA1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0312 (Fisher's exact test), Q value = 0.18

Table S20015.  Gene #1903: 'SMARCA1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
SMARCA1 MUTATED 3 0 5
SMARCA1 WILD-TYPE 48 83 72

Figure S4900.  Get High-res Image Gene #1903: 'SMARCA1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'SMARCA1 MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-04 (Fisher's exact test), Q value = 0.0052

Table S20016.  Gene #1903: 'SMARCA1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
SMARCA1 MUTATED 21 4 1 0
SMARCA1 WILD-TYPE 157 179 100 20

Figure S4901.  Get High-res Image Gene #1903: 'SMARCA1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'SMARCA1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00905 (Fisher's exact test), Q value = 0.089

Table S20017.  Gene #1903: 'SMARCA1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
SMARCA1 MUTATED 7 0 9
SMARCA1 WILD-TYPE 80 80 91

Figure S4902.  Get High-res Image Gene #1903: 'SMARCA1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'SMARCA1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.6 (Fisher's exact test), Q value = 0.9

Table S20018.  Gene #1903: 'SMARCA1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
SMARCA1 MUTATED 4 11 6
SMARCA1 WILD-TYPE 85 149 132
'SMARCA1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.608 (Fisher's exact test), Q value = 0.91

Table S20019.  Gene #1903: 'SMARCA1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
SMARCA1 MUTATED 11 8 2
SMARCA1 WILD-TYPE 171 125 70
'SMARCA1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.555 (Fisher's exact test), Q value = 0.87

Table S20020.  Gene #1903: 'SMARCA1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
SMARCA1 MUTATED 4 7 6 8
SMARCA1 WILD-TYPE 108 89 86 178
'SMARCA1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0134 (Fisher's exact test), Q value = 0.11

Table S20021.  Gene #1903: 'SMARCA1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
SMARCA1 MUTATED 6 2 7 2 1 2 5
SMARCA1 WILD-TYPE 54 48 42 38 62 123 94

Figure S4903.  Get High-res Image Gene #1903: 'SMARCA1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'SMARCA1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.543 (Fisher's exact test), Q value = 0.86

Table S20022.  Gene #1903: 'SMARCA1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
SMARCA1 MUTATED 10 4 2 9
SMARCA1 WILD-TYPE 120 74 66 187
'SMARCA1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.156 (Fisher's exact test), Q value = 0.44

Table S20023.  Gene #1903: 'SMARCA1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
SMARCA1 MUTATED 4 5 1 7 4 2 1 1 0
SMARCA1 WILD-TYPE 36 57 27 73 65 46 42 27 74
'SMARCA1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.32 (Fisher's exact test), Q value = 0.65

Table S20024.  Gene #1903: 'SMARCA1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
SMARCA1 MUTATED 2 0 3 1
SMARCA1 WILD-TYPE 31 31 24 18
'SMARCA1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.79 (Fisher's exact test), Q value = 1

Table S20025.  Gene #1903: 'SMARCA1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
SMARCA1 MUTATED 3 1 1 1
SMARCA1 WILD-TYPE 51 9 23 21
'MORC1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.282 (Fisher's exact test), Q value = 0.61

Table S20026.  Gene #1904: 'MORC1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
MORC1 MUTATED 3 1 1 3
MORC1 WILD-TYPE 43 57 63 40
'MORC1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.901 (Fisher's exact test), Q value = 1

Table S20027.  Gene #1904: 'MORC1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
MORC1 MUTATED 2 4 2
MORC1 WILD-TYPE 49 79 75
'MORC1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.23 (Fisher's exact test), Q value = 0.55

Table S20028.  Gene #1904: 'MORC1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
MORC1 MUTATED 11 4 3 0
MORC1 WILD-TYPE 167 179 98 20
'MORC1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.16 (Fisher's exact test), Q value = 0.45

Table S20029.  Gene #1904: 'MORC1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
MORC1 MUTATED 5 4 1
MORC1 WILD-TYPE 82 76 99
'MORC1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0419 (Fisher's exact test), Q value = 0.22

Table S20030.  Gene #1904: 'MORC1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
MORC1 MUTATED 1 4 10
MORC1 WILD-TYPE 88 156 128

Figure S4904.  Get High-res Image Gene #1904: 'MORC1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'MORC1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0907 (Fisher's exact test), Q value = 0.33

Table S20031.  Gene #1904: 'MORC1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
MORC1 MUTATED 10 5 0
MORC1 WILD-TYPE 172 128 72
'MORC1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.813 (Fisher's exact test), Q value = 1

Table S20032.  Gene #1904: 'MORC1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
MORC1 MUTATED 5 2 3 8
MORC1 WILD-TYPE 107 94 89 178
'MORC1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.779 (Fisher's exact test), Q value = 1

Table S20033.  Gene #1904: 'MORC1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
MORC1 MUTATED 3 1 3 0 3 4 4
MORC1 WILD-TYPE 57 49 46 40 60 121 95
'MORC1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.136 (Fisher's exact test), Q value = 0.41

Table S20034.  Gene #1904: 'MORC1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
MORC1 MUTATED 3 3 0 11
MORC1 WILD-TYPE 127 75 68 185
'MORC1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.546 (Fisher's exact test), Q value = 0.86

Table S20035.  Gene #1904: 'MORC1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
MORC1 MUTATED 0 3 2 4 4 2 0 0 2
MORC1 WILD-TYPE 40 59 26 76 65 46 43 28 72
'MORC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0243 (Fisher's exact test), Q value = 0.16

Table S20036.  Gene #1904: 'MORC1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
MORC1 MUTATED 1 0 0 3
MORC1 WILD-TYPE 32 31 27 16

Figure S4905.  Get High-res Image Gene #1904: 'MORC1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'MORC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.321 (Fisher's exact test), Q value = 0.65

Table S20037.  Gene #1904: 'MORC1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
MORC1 MUTATED 1 0 1 2
MORC1 WILD-TYPE 53 10 23 20
'ABL1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00906 (Fisher's exact test), Q value = 0.089

Table S20038.  Gene #1905: 'ABL1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ABL1 MUTATED 17 7 2 3
ABL1 WILD-TYPE 161 176 99 17

Figure S4906.  Get High-res Image Gene #1905: 'ABL1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ABL1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0318 (Fisher's exact test), Q value = 0.18

Table S20039.  Gene #1905: 'ABL1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ABL1 MUTATED 6 4 16
ABL1 WILD-TYPE 81 76 84

Figure S4907.  Get High-res Image Gene #1905: 'ABL1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'ABL1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.603 (Fisher's exact test), Q value = 0.91

Table S20040.  Gene #1905: 'ABL1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ABL1 MUTATED 7 8 10
ABL1 WILD-TYPE 82 152 128
'ABL1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.892 (Fisher's exact test), Q value = 1

Table S20041.  Gene #1905: 'ABL1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ABL1 MUTATED 13 8 4
ABL1 WILD-TYPE 169 125 68
'ABL1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00145 (Fisher's exact test), Q value = 0.031

Table S20042.  Gene #1905: 'ABL1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ABL1 MUTATED 8 12 7 3
ABL1 WILD-TYPE 104 84 85 183

Figure S4908.  Get High-res Image Gene #1905: 'ABL1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'ABL1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S20043.  Gene #1905: 'ABL1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ABL1 MUTATED 6 2 12 4 3 0 3
ABL1 WILD-TYPE 54 48 37 36 60 125 96

Figure S4909.  Get High-res Image Gene #1905: 'ABL1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ABL1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00101 (Fisher's exact test), Q value = 0.025

Table S20044.  Gene #1905: 'ABL1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ABL1 MUTATED 17 6 1 6
ABL1 WILD-TYPE 113 72 67 190

Figure S4910.  Get High-res Image Gene #1905: 'ABL1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'ABL1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00034 (Fisher's exact test), Q value = 0.012

Table S20045.  Gene #1905: 'ABL1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ABL1 MUTATED 6 4 1 2 12 2 3 0 0
ABL1 WILD-TYPE 34 58 27 78 57 46 40 28 74

Figure S4911.  Get High-res Image Gene #1905: 'ABL1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'ABL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00502 (Fisher's exact test), Q value = 0.064

Table S20046.  Gene #1905: 'ABL1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
ABL1 MUTATED 2 0 0 4
ABL1 WILD-TYPE 31 31 27 15

Figure S4912.  Get High-res Image Gene #1905: 'ABL1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'ABL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.681 (Fisher's exact test), Q value = 0.96

Table S20047.  Gene #1905: 'ABL1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
ABL1 MUTATED 4 0 2 0
ABL1 WILD-TYPE 50 10 22 22
'TTC13 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0155 (Fisher's exact test), Q value = 0.12

Table S20048.  Gene #1906: 'TTC13 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
TTC13 MUTATED 1 0 0 3
TTC13 WILD-TYPE 45 58 64 40

Figure S4913.  Get High-res Image Gene #1906: 'TTC13 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'TTC13 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0386 (Fisher's exact test), Q value = 0.21

Table S20049.  Gene #1906: 'TTC13 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
TTC13 MUTATED 3 0 1
TTC13 WILD-TYPE 48 83 76

Figure S4914.  Get High-res Image Gene #1906: 'TTC13 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'TTC13 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00035 (Fisher's exact test), Q value = 0.012

Table S20050.  Gene #1906: 'TTC13 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
TTC13 MUTATED 8 0 0 2
TTC13 WILD-TYPE 170 183 101 18

Figure S4915.  Get High-res Image Gene #1906: 'TTC13 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'TTC13 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.195 (Fisher's exact test), Q value = 0.5

Table S20051.  Gene #1906: 'TTC13 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
TTC13 MUTATED 1 0 4
TTC13 WILD-TYPE 86 80 96
'TTC13 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.17 (Fisher's exact test), Q value = 0.47

Table S20052.  Gene #1906: 'TTC13 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
TTC13 MUTATED 0 6 3
TTC13 WILD-TYPE 89 154 135
'TTC13 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.669 (Fisher's exact test), Q value = 0.95

Table S20053.  Gene #1906: 'TTC13 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
TTC13 MUTATED 3 4 2
TTC13 WILD-TYPE 179 129 70
'TTC13 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.113 (Fisher's exact test), Q value = 0.37

Table S20054.  Gene #1906: 'TTC13 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
TTC13 MUTATED 0 4 1 5
TTC13 WILD-TYPE 112 92 91 181
'TTC13 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0116 (Fisher's exact test), Q value = 0.11

Table S20055.  Gene #1906: 'TTC13 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
TTC13 MUTATED 1 1 4 0 0 0 4
TTC13 WILD-TYPE 59 49 45 40 63 125 95

Figure S4916.  Get High-res Image Gene #1906: 'TTC13 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'TTC13 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.283 (Fisher's exact test), Q value = 0.61

Table S20056.  Gene #1906: 'TTC13 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
TTC13 MUTATED 4 0 0 5
TTC13 WILD-TYPE 126 78 68 191
'TTC13 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0273 (Fisher's exact test), Q value = 0.17

Table S20057.  Gene #1906: 'TTC13 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
TTC13 MUTATED 0 1 0 1 6 0 1 0 0
TTC13 WILD-TYPE 40 61 28 79 63 48 42 28 74

Figure S4917.  Get High-res Image Gene #1906: 'TTC13 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'PTPMT1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0803 (Fisher's exact test), Q value = 0.31

Table S20058.  Gene #1907: 'PTPMT1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
PTPMT1 MUTATED 5 1 0 1
PTPMT1 WILD-TYPE 173 182 101 19
'PTPMT1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.327 (Fisher's exact test), Q value = 0.66

Table S20059.  Gene #1907: 'PTPMT1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
PTPMT1 MUTATED 3 0 2
PTPMT1 WILD-TYPE 84 80 98
'PTPMT1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.138 (Fisher's exact test), Q value = 0.41

Table S20060.  Gene #1907: 'PTPMT1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
PTPMT1 MUTATED 0 1 4
PTPMT1 WILD-TYPE 89 159 134
'PTPMT1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.507 (Fisher's exact test), Q value = 0.83

Table S20061.  Gene #1907: 'PTPMT1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
PTPMT1 MUTATED 4 1 0
PTPMT1 WILD-TYPE 178 132 72
'PTPMT1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.128 (Fisher's exact test), Q value = 0.4

Table S20062.  Gene #1907: 'PTPMT1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
PTPMT1 MUTATED 1 4 0 2
PTPMT1 WILD-TYPE 111 92 92 184
'PTPMT1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.208 (Fisher's exact test), Q value = 0.51

Table S20063.  Gene #1907: 'PTPMT1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
PTPMT1 MUTATED 0 0 2 2 1 1 1
PTPMT1 WILD-TYPE 60 50 47 38 62 124 98
'PTPMT1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.321 (Fisher's exact test), Q value = 0.65

Table S20064.  Gene #1907: 'PTPMT1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
PTPMT1 MUTATED 4 0 0 3
PTPMT1 WILD-TYPE 126 78 68 193
'PTPMT1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.3 (Fisher's exact test), Q value = 0.63

Table S20065.  Gene #1907: 'PTPMT1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
PTPMT1 MUTATED 0 0 0 3 3 1 0 0 0
PTPMT1 WILD-TYPE 40 62 28 77 66 47 43 28 74
'PTPMT1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.167 (Fisher's exact test), Q value = 0.46

Table S20066.  Gene #1907: 'PTPMT1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
PTPMT1 MUTATED 0 0 2 1
PTPMT1 WILD-TYPE 33 31 25 18
'PTPMT1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.139 (Fisher's exact test), Q value = 0.42

Table S20067.  Gene #1907: 'PTPMT1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
PTPMT1 MUTATED 0 0 2 1
PTPMT1 WILD-TYPE 54 10 22 21
'HEXIM2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.284 (Fisher's exact test), Q value = 0.61

Table S20068.  Gene #1908: 'HEXIM2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
HEXIM2 MUTATED 5 2 0 0
HEXIM2 WILD-TYPE 173 181 101 20
'HEXIM2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.875 (Fisher's exact test), Q value = 1

Table S20069.  Gene #1908: 'HEXIM2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
HEXIM2 MUTATED 2 1 3
HEXIM2 WILD-TYPE 85 79 97
'HEXIM2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.615 (Fisher's exact test), Q value = 0.91

Table S20070.  Gene #1908: 'HEXIM2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
HEXIM2 MUTATED 1 2 4
HEXIM2 WILD-TYPE 88 158 134
'HEXIM2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.686 (Fisher's exact test), Q value = 0.96

Table S20071.  Gene #1908: 'HEXIM2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
HEXIM2 MUTATED 4 3 0
HEXIM2 WILD-TYPE 178 130 72
'HEXIM2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.299 (Fisher's exact test), Q value = 0.63

Table S20072.  Gene #1908: 'HEXIM2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
HEXIM2 MUTATED 2 3 1 1
HEXIM2 WILD-TYPE 110 93 91 185
'HEXIM2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.298 (Fisher's exact test), Q value = 0.63

Table S20073.  Gene #1908: 'HEXIM2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
HEXIM2 MUTATED 1 1 2 0 1 0 2
HEXIM2 WILD-TYPE 59 49 47 40 62 125 97
'HEXIM2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.902 (Fisher's exact test), Q value = 1

Table S20074.  Gene #1908: 'HEXIM2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
HEXIM2 MUTATED 2 1 0 4
HEXIM2 WILD-TYPE 128 77 68 192
'HEXIM2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0897 (Fisher's exact test), Q value = 0.33

Table S20075.  Gene #1908: 'HEXIM2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
HEXIM2 MUTATED 0 0 1 0 4 0 1 0 1
HEXIM2 WILD-TYPE 40 62 27 80 65 48 42 28 73
'ST14 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.208 (Fisher's exact test), Q value = 0.52

Table S20076.  Gene #1909: 'ST14 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ST14 MUTATED 7 2 2 1
ST14 WILD-TYPE 171 181 99 19
'ST14 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.763 (Fisher's exact test), Q value = 1

Table S20077.  Gene #1909: 'ST14 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ST14 MUTATED 4 2 3
ST14 WILD-TYPE 83 78 97
'ST14 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.692 (Fisher's exact test), Q value = 0.97

Table S20078.  Gene #1909: 'ST14 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ST14 MUTATED 1 5 3
ST14 WILD-TYPE 88 155 135
'ST14 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.498 (Fisher's exact test), Q value = 0.82

Table S20079.  Gene #1909: 'ST14 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ST14 MUTATED 3 5 1
ST14 WILD-TYPE 179 128 71
'ST14 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.264 (Fisher's exact test), Q value = 0.59

Table S20080.  Gene #1909: 'ST14 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ST14 MUTATED 3 5 1 3
ST14 WILD-TYPE 109 91 91 183
'ST14 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00835 (Fisher's exact test), Q value = 0.085

Table S20081.  Gene #1909: 'ST14 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ST14 MUTATED 1 1 5 2 1 0 2
ST14 WILD-TYPE 59 49 44 38 62 125 97

Figure S4918.  Get High-res Image Gene #1909: 'ST14 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ST14 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.39 (Fisher's exact test), Q value = 0.72

Table S20082.  Gene #1909: 'ST14 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ST14 MUTATED 6 2 1 3
ST14 WILD-TYPE 124 76 67 193
'ST14 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.194 (Fisher's exact test), Q value = 0.5

Table S20083.  Gene #1909: 'ST14 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ST14 MUTATED 2 3 0 1 4 0 1 1 0
ST14 WILD-TYPE 38 59 28 79 65 48 42 27 74
'ST14 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.703 (Fisher's exact test), Q value = 0.97

Table S20084.  Gene #1909: 'ST14 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
ST14 MUTATED 2 1 0 0
ST14 WILD-TYPE 31 30 27 19
'ST14 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.839 (Fisher's exact test), Q value = 1

Table S20085.  Gene #1909: 'ST14 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
ST14 MUTATED 2 0 0 1
ST14 WILD-TYPE 52 10 24 21
'DPPA2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.165 (Fisher's exact test), Q value = 0.46

Table S20086.  Gene #1910: 'DPPA2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
DPPA2 MUTATED 6 2 0 0
DPPA2 WILD-TYPE 172 181 101 20
'DPPA2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.876 (Fisher's exact test), Q value = 1

Table S20087.  Gene #1910: 'DPPA2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
DPPA2 MUTATED 2 1 3
DPPA2 WILD-TYPE 85 79 97
'DPPA2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0613 (Fisher's exact test), Q value = 0.27

Table S20088.  Gene #1910: 'DPPA2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
DPPA2 MUTATED 1 0 4
DPPA2 WILD-TYPE 88 160 134
'DPPA2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.101 (Fisher's exact test), Q value = 0.35

Table S20089.  Gene #1910: 'DPPA2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
DPPA2 MUTATED 5 0 0
DPPA2 WILD-TYPE 177 133 72
'DPPA2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.543 (Fisher's exact test), Q value = 0.86

Table S20090.  Gene #1910: 'DPPA2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
DPPA2 MUTATED 1 2 3 2
DPPA2 WILD-TYPE 111 94 89 184
'DPPA2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0561 (Fisher's exact test), Q value = 0.26

Table S20091.  Gene #1910: 'DPPA2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
DPPA2 MUTATED 0 1 3 0 2 0 2
DPPA2 WILD-TYPE 60 49 46 40 61 125 97
'DPPA2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.331 (Fisher's exact test), Q value = 0.66

Table S20092.  Gene #1910: 'DPPA2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
DPPA2 MUTATED 4 2 0 2
DPPA2 WILD-TYPE 126 76 68 194
'DPPA2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0715 (Fisher's exact test), Q value = 0.29

Table S20093.  Gene #1910: 'DPPA2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
DPPA2 MUTATED 2 3 1 0 2 0 0 0 0
DPPA2 WILD-TYPE 38 59 27 80 67 48 43 28 74
'MUC2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0179 (Fisher's exact test), Q value = 0.13

Table S20094.  Gene #1911: 'MUC2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
MUC2 MUTATED 3 0 0 0
MUC2 WILD-TYPE 43 58 64 43

Figure S4919.  Get High-res Image Gene #1911: 'MUC2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'MUC2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0133 (Fisher's exact test), Q value = 0.11

Table S20095.  Gene #1911: 'MUC2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
MUC2 MUTATED 3 0 0
MUC2 WILD-TYPE 48 83 77

Figure S4920.  Get High-res Image Gene #1911: 'MUC2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'MUC2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00306 (Fisher's exact test), Q value = 0.049

Table S20096.  Gene #1911: 'MUC2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
MUC2 MUTATED 18 4 2 1
MUC2 WILD-TYPE 160 179 99 19

Figure S4921.  Get High-res Image Gene #1911: 'MUC2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'MUC2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0667 (Fisher's exact test), Q value = 0.28

Table S20097.  Gene #1911: 'MUC2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
MUC2 MUTATED 5 3 13
MUC2 WILD-TYPE 82 77 87
'MUC2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.959 (Fisher's exact test), Q value = 1

Table S20098.  Gene #1911: 'MUC2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
MUC2 MUTATED 5 10 7
MUC2 WILD-TYPE 84 150 131
'MUC2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.621 (Fisher's exact test), Q value = 0.92

Table S20099.  Gene #1911: 'MUC2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
MUC2 MUTATED 9 10 3
MUC2 WILD-TYPE 173 123 69
'MUC2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0137 (Fisher's exact test), Q value = 0.12

Table S20100.  Gene #1911: 'MUC2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
MUC2 MUTATED 4 10 7 4
MUC2 WILD-TYPE 108 86 85 182

Figure S4922.  Get High-res Image Gene #1911: 'MUC2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'MUC2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 7e-05 (Fisher's exact test), Q value = 0.0041

Table S20101.  Gene #1911: 'MUC2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
MUC2 MUTATED 2 5 9 3 2 0 4
MUC2 WILD-TYPE 58 45 40 37 61 125 95

Figure S4923.  Get High-res Image Gene #1911: 'MUC2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'MUC2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00556 (Fisher's exact test), Q value = 0.068

Table S20102.  Gene #1911: 'MUC2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
MUC2 MUTATED 15 3 2 5
MUC2 WILD-TYPE 115 75 66 191

Figure S4924.  Get High-res Image Gene #1911: 'MUC2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'MUC2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.587 (Fisher's exact test), Q value = 0.89

Table S20103.  Gene #1911: 'MUC2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
MUC2 MUTATED 4 4 2 2 6 2 2 1 2
MUC2 WILD-TYPE 36 58 26 78 63 46 41 27 72
'MUC2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0163 (Fisher's exact test), Q value = 0.13

Table S20104.  Gene #1911: 'MUC2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
MUC2 MUTATED 1 1 0 4
MUC2 WILD-TYPE 32 30 27 15

Figure S4925.  Get High-res Image Gene #1911: 'MUC2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'MUC2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.462 (Fisher's exact test), Q value = 0.79

Table S20105.  Gene #1911: 'MUC2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
MUC2 MUTATED 4 1 0 1
MUC2 WILD-TYPE 50 9 24 21
'CTTN MUTATION STATUS' versus 'CN_CNMF'

P value = 0.176 (Fisher's exact test), Q value = 0.48

Table S20106.  Gene #1912: 'CTTN MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
CTTN MUTATED 4 0 1 0
CTTN WILD-TYPE 174 183 100 20
'CTTN MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.555 (Fisher's exact test), Q value = 0.87

Table S20107.  Gene #1912: 'CTTN MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
CTTN MUTATED 2 0 2
CTTN WILD-TYPE 85 80 98
'CTTN MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.613 (Fisher's exact test), Q value = 0.91

Table S20108.  Gene #1912: 'CTTN MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
CTTN MUTATED 0 1 2
CTTN WILD-TYPE 89 159 136
'CTTN MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.592 (Fisher's exact test), Q value = 0.9

Table S20109.  Gene #1912: 'CTTN MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
CTTN MUTATED 1 2 0
CTTN WILD-TYPE 181 131 72
'CTTN MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.114 (Fisher's exact test), Q value = 0.37

Table S20110.  Gene #1912: 'CTTN MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
CTTN MUTATED 0 3 1 1
CTTN WILD-TYPE 112 93 91 185
'CTTN MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0427 (Fisher's exact test), Q value = 0.22

Table S20111.  Gene #1912: 'CTTN MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
CTTN MUTATED 1 1 2 1 0 0 0
CTTN WILD-TYPE 59 49 47 39 63 125 99

Figure S4926.  Get High-res Image Gene #1912: 'CTTN MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CTTN MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.504 (Fisher's exact test), Q value = 0.83

Table S20112.  Gene #1912: 'CTTN MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
CTTN MUTATED 3 0 0 2
CTTN WILD-TYPE 127 78 68 194
'CTTN MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.749 (Fisher's exact test), Q value = 1

Table S20113.  Gene #1912: 'CTTN MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
CTTN MUTATED 1 1 0 0 2 0 0 0 1
CTTN WILD-TYPE 39 61 28 80 67 48 43 28 73
'NFIB MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.223 (Fisher's exact test), Q value = 0.54

Table S20114.  Gene #1913: 'NFIB MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
NFIB MUTATED 2 1 0 2
NFIB WILD-TYPE 44 57 64 41
'NFIB MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.739 (Fisher's exact test), Q value = 1

Table S20115.  Gene #1913: 'NFIB MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
NFIB MUTATED 2 2 1
NFIB WILD-TYPE 49 81 76
'NFIB MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00304 (Fisher's exact test), Q value = 0.049

Table S20116.  Gene #1913: 'NFIB MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
NFIB MUTATED 12 2 0 0
NFIB WILD-TYPE 166 181 101 20

Figure S4927.  Get High-res Image Gene #1913: 'NFIB MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'NFIB MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.142 (Fisher's exact test), Q value = 0.42

Table S20117.  Gene #1913: 'NFIB MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
NFIB MUTATED 4 0 4
NFIB WILD-TYPE 83 80 96
'NFIB MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.523 (Fisher's exact test), Q value = 0.84

Table S20118.  Gene #1913: 'NFIB MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
NFIB MUTATED 1 6 5
NFIB WILD-TYPE 88 154 133
'NFIB MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.265 (Fisher's exact test), Q value = 0.59

Table S20119.  Gene #1913: 'NFIB MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
NFIB MUTATED 4 7 1
NFIB WILD-TYPE 178 126 71
'NFIB MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.38 (Fisher's exact test), Q value = 0.71

Table S20120.  Gene #1913: 'NFIB MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
NFIB MUTATED 1 2 4 7
NFIB WILD-TYPE 111 94 88 179
'NFIB MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0972 (Fisher's exact test), Q value = 0.34

Table S20121.  Gene #1913: 'NFIB MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
NFIB MUTATED 1 2 4 0 0 2 5
NFIB WILD-TYPE 59 48 45 40 63 123 94
'NFIB MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.597 (Fisher's exact test), Q value = 0.9

Table S20122.  Gene #1913: 'NFIB MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
NFIB MUTATED 2 2 1 8
NFIB WILD-TYPE 128 76 67 188
'NFIB MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.111 (Fisher's exact test), Q value = 0.37

Table S20123.  Gene #1913: 'NFIB MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
NFIB MUTATED 0 1 0 4 6 0 0 0 2
NFIB WILD-TYPE 40 61 28 76 63 48 43 28 72
'NFIB MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.78 (Fisher's exact test), Q value = 1

Table S20124.  Gene #1913: 'NFIB MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
NFIB MUTATED 1 0 1 1
NFIB WILD-TYPE 32 31 26 18
'NFIB MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S20125.  Gene #1913: 'NFIB MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
NFIB MUTATED 2 0 1 0
NFIB WILD-TYPE 52 10 23 22
'IFNA1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.231 (Fisher's exact test), Q value = 0.55

Table S20126.  Gene #1914: 'IFNA1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
IFNA1 MUTATED 3 1 2 1
IFNA1 WILD-TYPE 175 182 99 19
'IFNA1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.879 (Fisher's exact test), Q value = 1

Table S20127.  Gene #1914: 'IFNA1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
IFNA1 MUTATED 2 1 3
IFNA1 WILD-TYPE 85 79 97
'IFNA1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.445 (Fisher's exact test), Q value = 0.77

Table S20128.  Gene #1914: 'IFNA1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
IFNA1 MUTATED 2 1 3
IFNA1 WILD-TYPE 87 159 135
'IFNA1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0412 (Fisher's exact test), Q value = 0.21

Table S20129.  Gene #1914: 'IFNA1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
IFNA1 MUTATED 6 0 0
IFNA1 WILD-TYPE 176 133 72

Figure S4928.  Get High-res Image Gene #1914: 'IFNA1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'IFNA1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.222 (Fisher's exact test), Q value = 0.54

Table S20130.  Gene #1914: 'IFNA1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
IFNA1 MUTATED 1 2 3 1
IFNA1 WILD-TYPE 111 94 89 185
'IFNA1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0253 (Fisher's exact test), Q value = 0.16

Table S20131.  Gene #1914: 'IFNA1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
IFNA1 MUTATED 0 3 2 0 1 0 1
IFNA1 WILD-TYPE 60 47 47 40 62 125 98

Figure S4929.  Get High-res Image Gene #1914: 'IFNA1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'IFNA1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.181 (Fisher's exact test), Q value = 0.48

Table S20132.  Gene #1914: 'IFNA1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
IFNA1 MUTATED 4 1 0 1
IFNA1 WILD-TYPE 126 77 68 195
'IFNA1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.375 (Fisher's exact test), Q value = 0.71

Table S20133.  Gene #1914: 'IFNA1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
IFNA1 MUTATED 2 1 1 1 1 0 0 0 0
IFNA1 WILD-TYPE 38 61 27 79 68 48 43 28 74
'RGS3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0041 (Fisher's exact test), Q value = 0.058

Table S20134.  Gene #1915: 'RGS3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
RGS3 MUTATED 3 0 0 4
RGS3 WILD-TYPE 43 58 64 39

Figure S4930.  Get High-res Image Gene #1915: 'RGS3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'RGS3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00466 (Fisher's exact test), Q value = 0.062

Table S20135.  Gene #1915: 'RGS3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
RGS3 MUTATED 5 0 2
RGS3 WILD-TYPE 46 83 75

Figure S4931.  Get High-res Image Gene #1915: 'RGS3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'RGS3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00022 (Fisher's exact test), Q value = 0.0088

Table S20136.  Gene #1915: 'RGS3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
RGS3 MUTATED 15 2 0 1
RGS3 WILD-TYPE 163 181 101 19

Figure S4932.  Get High-res Image Gene #1915: 'RGS3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'RGS3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S20137.  Gene #1915: 'RGS3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
RGS3 MUTATED 4 3 4
RGS3 WILD-TYPE 83 77 96
'RGS3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.802 (Fisher's exact test), Q value = 1

Table S20138.  Gene #1915: 'RGS3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
RGS3 MUTATED 3 6 7
RGS3 WILD-TYPE 86 154 131
'RGS3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.395 (Fisher's exact test), Q value = 0.72

Table S20139.  Gene #1915: 'RGS3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
RGS3 MUTATED 5 7 4
RGS3 WILD-TYPE 177 126 68
'RGS3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.924 (Fisher's exact test), Q value = 1

Table S20140.  Gene #1915: 'RGS3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
RGS3 MUTATED 3 4 3 8
RGS3 WILD-TYPE 109 92 89 178
'RGS3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00411 (Fisher's exact test), Q value = 0.058

Table S20141.  Gene #1915: 'RGS3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
RGS3 MUTATED 3 3 4 1 0 0 7
RGS3 WILD-TYPE 57 47 45 39 63 125 92

Figure S4933.  Get High-res Image Gene #1915: 'RGS3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'RGS3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.968 (Fisher's exact test), Q value = 1

Table S20142.  Gene #1915: 'RGS3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
RGS3 MUTATED 5 2 2 8
RGS3 WILD-TYPE 125 76 66 188
'RGS3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0218 (Fisher's exact test), Q value = 0.15

Table S20143.  Gene #1915: 'RGS3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
RGS3 MUTATED 3 3 2 0 6 0 2 0 1
RGS3 WILD-TYPE 37 59 26 80 63 48 41 28 73

Figure S4934.  Get High-res Image Gene #1915: 'RGS3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'RGS3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0506 (Fisher's exact test), Q value = 0.24

Table S20144.  Gene #1915: 'RGS3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
RGS3 MUTATED 4 0 0 1
RGS3 WILD-TYPE 29 31 27 18
'RGS3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.633 (Fisher's exact test), Q value = 0.93

Table S20145.  Gene #1915: 'RGS3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
RGS3 MUTATED 4 0 0 1
RGS3 WILD-TYPE 50 10 24 21
'CCDC89 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.122 (Fisher's exact test), Q value = 0.39

Table S20146.  Gene #1916: 'CCDC89 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
CCDC89 MUTATED 4 0 0 0
CCDC89 WILD-TYPE 174 183 101 20
'CCDC89 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.557 (Fisher's exact test), Q value = 0.87

Table S20147.  Gene #1916: 'CCDC89 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
CCDC89 MUTATED 2 0 2
CCDC89 WILD-TYPE 85 80 98
'CCDC89 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S20148.  Gene #1916: 'CCDC89 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
CCDC89 MUTATED 1 1 1
CCDC89 WILD-TYPE 88 159 137
'CCDC89 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0413 (Fisher's exact test), Q value = 0.21

Table S20149.  Gene #1916: 'CCDC89 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
CCDC89 MUTATED 0 1 2
CCDC89 WILD-TYPE 182 132 70

Figure S4935.  Get High-res Image Gene #1916: 'CCDC89 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'CCDC89 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0169 (Fisher's exact test), Q value = 0.13

Table S20150.  Gene #1916: 'CCDC89 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
CCDC89 MUTATED 0 3 1 0
CCDC89 WILD-TYPE 112 93 91 186

Figure S4936.  Get High-res Image Gene #1916: 'CCDC89 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'CCDC89 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0031 (Fisher's exact test), Q value = 0.05

Table S20151.  Gene #1916: 'CCDC89 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
CCDC89 MUTATED 0 1 3 0 0 0 0
CCDC89 WILD-TYPE 60 49 46 40 63 125 99

Figure S4937.  Get High-res Image Gene #1916: 'CCDC89 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CCDC89 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S20152.  Gene #1916: 'CCDC89 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
CCDC89 MUTATED 1 1 0 2
CCDC89 WILD-TYPE 129 77 68 194
'CCDC89 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.802 (Fisher's exact test), Q value = 1

Table S20153.  Gene #1916: 'CCDC89 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
CCDC89 MUTATED 0 1 0 0 2 0 0 0 1
CCDC89 WILD-TYPE 40 61 28 80 67 48 43 28 73
'MIA2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.193 (Fisher's exact test), Q value = 0.5

Table S20154.  Gene #1917: 'MIA2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
MIA2 MUTATED 0 0 1 2
MIA2 WILD-TYPE 46 58 63 41
'MIA2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.789 (Fisher's exact test), Q value = 1

Table S20155.  Gene #1917: 'MIA2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
MIA2 MUTATED 0 2 1
MIA2 WILD-TYPE 51 81 76
'MIA2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.425 (Fisher's exact test), Q value = 0.75

Table S20156.  Gene #1917: 'MIA2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
MIA2 MUTATED 6 4 1 1
MIA2 WILD-TYPE 172 179 100 19
'MIA2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.399 (Fisher's exact test), Q value = 0.72

Table S20157.  Gene #1917: 'MIA2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
MIA2 MUTATED 5 2 2
MIA2 WILD-TYPE 82 78 98
'MIA2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.54 (Fisher's exact test), Q value = 0.86

Table S20158.  Gene #1917: 'MIA2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
MIA2 MUTATED 1 6 4
MIA2 WILD-TYPE 88 154 134
'MIA2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.783 (Fisher's exact test), Q value = 1

Table S20159.  Gene #1917: 'MIA2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
MIA2 MUTATED 5 5 1
MIA2 WILD-TYPE 177 128 71
'MIA2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.173 (Fisher's exact test), Q value = 0.47

Table S20160.  Gene #1917: 'MIA2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
MIA2 MUTATED 4 0 4 4
MIA2 WILD-TYPE 108 96 88 182
'MIA2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0824 (Fisher's exact test), Q value = 0.31

Table S20161.  Gene #1917: 'MIA2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
MIA2 MUTATED 4 0 3 0 2 1 2
MIA2 WILD-TYPE 56 50 46 40 61 124 97
'MIA2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.772 (Fisher's exact test), Q value = 1

Table S20162.  Gene #1917: 'MIA2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
MIA2 MUTATED 4 3 1 4
MIA2 WILD-TYPE 126 75 67 192
'MIA2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0372 (Fisher's exact test), Q value = 0.2

Table S20163.  Gene #1917: 'MIA2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
MIA2 MUTATED 1 3 4 2 1 0 0 0 1
MIA2 WILD-TYPE 39 59 24 78 68 48 43 28 73

Figure S4938.  Get High-res Image Gene #1917: 'MIA2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'MIA2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.463 (Fisher's exact test), Q value = 0.79

Table S20164.  Gene #1917: 'MIA2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
MIA2 MUTATED 1 0 2 1
MIA2 WILD-TYPE 32 31 25 18
'MIA2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.603 (Fisher's exact test), Q value = 0.91

Table S20165.  Gene #1917: 'MIA2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
MIA2 MUTATED 2 1 1 0
MIA2 WILD-TYPE 52 9 23 22
'DDR2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.174 (Fisher's exact test), Q value = 0.47

Table S20166.  Gene #1918: 'DDR2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
DDR2 MUTATED 1 0 2 3
DDR2 WILD-TYPE 45 58 62 40
'DDR2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.881 (Fisher's exact test), Q value = 1

Table S20167.  Gene #1918: 'DDR2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
DDR2 MUTATED 2 2 2
DDR2 WILD-TYPE 49 81 75
'DDR2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.594 (Fisher's exact test), Q value = 0.9

Table S20168.  Gene #1918: 'DDR2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
DDR2 MUTATED 8 4 3 0
DDR2 WILD-TYPE 170 179 98 20
'DDR2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.836 (Fisher's exact test), Q value = 1

Table S20169.  Gene #1918: 'DDR2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
DDR2 MUTATED 2 3 4
DDR2 WILD-TYPE 85 77 96
'DDR2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.583 (Fisher's exact test), Q value = 0.89

Table S20170.  Gene #1918: 'DDR2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
DDR2 MUTATED 4 4 3
DDR2 WILD-TYPE 85 156 135
'DDR2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.849 (Fisher's exact test), Q value = 1

Table S20171.  Gene #1918: 'DDR2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
DDR2 MUTATED 6 4 1
DDR2 WILD-TYPE 176 129 71
'DDR2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.79 (Fisher's exact test), Q value = 1

Table S20172.  Gene #1918: 'DDR2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
DDR2 MUTATED 2 4 3 6
DDR2 WILD-TYPE 110 92 89 180
'DDR2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.724 (Fisher's exact test), Q value = 0.99

Table S20173.  Gene #1918: 'DDR2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
DDR2 MUTATED 1 2 3 1 2 2 4
DDR2 WILD-TYPE 59 48 46 39 61 123 95
'DDR2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.707 (Fisher's exact test), Q value = 0.98

Table S20174.  Gene #1918: 'DDR2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
DDR2 MUTATED 5 3 2 4
DDR2 WILD-TYPE 125 75 66 192
'DDR2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.36 (Fisher's exact test), Q value = 0.69

Table S20175.  Gene #1918: 'DDR2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
DDR2 MUTATED 1 3 3 1 2 1 2 0 1
DDR2 WILD-TYPE 39 59 25 79 67 47 41 28 73
'DDR2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.728 (Fisher's exact test), Q value = 1

Table S20176.  Gene #1918: 'DDR2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
DDR2 MUTATED 2 1 1 2
DDR2 WILD-TYPE 31 30 26 17
'DDR2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.681 (Fisher's exact test), Q value = 0.96

Table S20177.  Gene #1918: 'DDR2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
DDR2 MUTATED 4 0 2 0
DDR2 WILD-TYPE 50 10 22 22
'IL3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.274 (Fisher's exact test), Q value = 0.6

Table S20178.  Gene #1919: 'IL3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
IL3 MUTATED 2 0 1 0
IL3 WILD-TYPE 44 58 63 43
'IL3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.184 (Fisher's exact test), Q value = 0.48

Table S20179.  Gene #1919: 'IL3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
IL3 MUTATED 2 0 1
IL3 WILD-TYPE 49 83 76
'IL3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.906 (Fisher's exact test), Q value = 1

Table S20180.  Gene #1919: 'IL3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
IL3 MUTATED 3 2 1 0
IL3 WILD-TYPE 175 181 100 20
'IL3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.201 (Fisher's exact test), Q value = 0.51

Table S20181.  Gene #1919: 'IL3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
IL3 MUTATED 1 2 0
IL3 WILD-TYPE 86 78 100
'IL3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0105 (Fisher's exact test), Q value = 0.098

Table S20182.  Gene #1919: 'IL3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
IL3 MUTATED 0 0 5
IL3 WILD-TYPE 89 160 133

Figure S4939.  Get High-res Image Gene #1919: 'IL3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'IL3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.505 (Fisher's exact test), Q value = 0.83

Table S20183.  Gene #1919: 'IL3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
IL3 MUTATED 4 1 0
IL3 WILD-TYPE 178 132 72
'IL3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.76 (Fisher's exact test), Q value = 1

Table S20184.  Gene #1919: 'IL3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
IL3 MUTATED 2 0 1 3
IL3 WILD-TYPE 110 96 91 183
'IL3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.707 (Fisher's exact test), Q value = 0.98

Table S20185.  Gene #1919: 'IL3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
IL3 MUTATED 1 0 0 0 2 1 2
IL3 WILD-TYPE 59 50 49 40 61 124 97
'IL3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S20186.  Gene #1919: 'IL3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
IL3 MUTATED 1 1 1 2
IL3 WILD-TYPE 129 77 67 194
'IL3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.032 (Fisher's exact test), Q value = 0.18

Table S20187.  Gene #1919: 'IL3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
IL3 MUTATED 1 1 0 0 0 0 1 2 0
IL3 WILD-TYPE 39 61 28 80 69 48 42 26 74

Figure S4940.  Get High-res Image Gene #1919: 'IL3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'NCF2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.902 (Fisher's exact test), Q value = 1

Table S20188.  Gene #1920: 'NCF2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
NCF2 MUTATED 5 3 2 0
NCF2 WILD-TYPE 173 180 99 20
'NCF2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.221 (Fisher's exact test), Q value = 0.53

Table S20189.  Gene #1920: 'NCF2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
NCF2 MUTATED 5 1 2
NCF2 WILD-TYPE 82 79 98
'NCF2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.421 (Fisher's exact test), Q value = 0.75

Table S20190.  Gene #1920: 'NCF2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
NCF2 MUTATED 2 2 5
NCF2 WILD-TYPE 87 158 133
'NCF2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.327 (Fisher's exact test), Q value = 0.66

Table S20191.  Gene #1920: 'NCF2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
NCF2 MUTATED 6 1 2
NCF2 WILD-TYPE 176 132 70
'NCF2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.488 (Fisher's exact test), Q value = 0.81

Table S20192.  Gene #1920: 'NCF2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
NCF2 MUTATED 2 3 3 2
NCF2 WILD-TYPE 110 93 89 184
'NCF2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.126 (Fisher's exact test), Q value = 0.39

Table S20193.  Gene #1920: 'NCF2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
NCF2 MUTATED 0 1 3 1 3 1 1
NCF2 WILD-TYPE 60 49 46 39 60 124 98
'NCF2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.293 (Fisher's exact test), Q value = 0.62

Table S20194.  Gene #1920: 'NCF2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
NCF2 MUTATED 4 3 0 3
NCF2 WILD-TYPE 126 75 68 193
'NCF2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.255 (Fisher's exact test), Q value = 0.58

Table S20195.  Gene #1920: 'NCF2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
NCF2 MUTATED 2 2 1 1 3 0 0 1 0
NCF2 WILD-TYPE 38 60 27 79 66 48 43 27 74
'DCLRE1A MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0975 (Fisher's exact test), Q value = 0.34

Table S20196.  Gene #1921: 'DCLRE1A MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
DCLRE1A MUTATED 2 1 0 3
DCLRE1A WILD-TYPE 44 57 64 40
'DCLRE1A MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0573 (Fisher's exact test), Q value = 0.26

Table S20197.  Gene #1921: 'DCLRE1A MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
DCLRE1A MUTATED 3 0 3
DCLRE1A WILD-TYPE 48 83 74
'DCLRE1A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0239 (Fisher's exact test), Q value = 0.16

Table S20198.  Gene #1921: 'DCLRE1A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
DCLRE1A MUTATED 10 1 2 0
DCLRE1A WILD-TYPE 168 182 99 20

Figure S4941.  Get High-res Image Gene #1921: 'DCLRE1A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'DCLRE1A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.865 (Fisher's exact test), Q value = 1

Table S20199.  Gene #1921: 'DCLRE1A MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
DCLRE1A MUTATED 1 2 2
DCLRE1A WILD-TYPE 86 78 98
'DCLRE1A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.847 (Fisher's exact test), Q value = 1

Table S20200.  Gene #1921: 'DCLRE1A MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
DCLRE1A MUTATED 3 4 3
DCLRE1A WILD-TYPE 86 156 135
'DCLRE1A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.131 (Fisher's exact test), Q value = 0.4

Table S20201.  Gene #1921: 'DCLRE1A MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
DCLRE1A MUTATED 2 6 2
DCLRE1A WILD-TYPE 180 127 70
'DCLRE1A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.823 (Fisher's exact test), Q value = 1

Table S20202.  Gene #1921: 'DCLRE1A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
DCLRE1A MUTATED 2 2 2 7
DCLRE1A WILD-TYPE 110 94 90 179
'DCLRE1A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.24 (Fisher's exact test), Q value = 0.56

Table S20203.  Gene #1921: 'DCLRE1A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
DCLRE1A MUTATED 2 1 3 0 1 1 5
DCLRE1A WILD-TYPE 58 49 46 40 62 124 94
'DCLRE1A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.404 (Fisher's exact test), Q value = 0.73

Table S20204.  Gene #1921: 'DCLRE1A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
DCLRE1A MUTATED 3 0 2 7
DCLRE1A WILD-TYPE 127 78 66 189
'DCLRE1A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00466 (Fisher's exact test), Q value = 0.062

Table S20205.  Gene #1921: 'DCLRE1A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
DCLRE1A MUTATED 0 1 2 0 5 0 3 1 0
DCLRE1A WILD-TYPE 40 61 26 80 64 48 40 27 74

Figure S4942.  Get High-res Image Gene #1921: 'DCLRE1A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'DCLRE1A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.254 (Fisher's exact test), Q value = 0.58

Table S20206.  Gene #1921: 'DCLRE1A MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
DCLRE1A MUTATED 2 0 0 1
DCLRE1A WILD-TYPE 31 31 27 18
'DCLRE1A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.694 (Fisher's exact test), Q value = 0.97

Table S20207.  Gene #1921: 'DCLRE1A MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
DCLRE1A MUTATED 1 0 1 1
DCLRE1A WILD-TYPE 53 10 23 21
'ORC4L MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00797 (Fisher's exact test), Q value = 0.084

Table S20208.  Gene #1922: 'ORC4L MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ORC4L MUTATED 0 0 0 3
ORC4L WILD-TYPE 46 58 64 40

Figure S4943.  Get High-res Image Gene #1922: 'ORC4L MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'ORC4L MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.253 (Fisher's exact test), Q value = 0.58

Table S20209.  Gene #1922: 'ORC4L MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ORC4L MUTATED 2 1 0
ORC4L WILD-TYPE 49 82 77
'ORC4L MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00578 (Fisher's exact test), Q value = 0.069

Table S20210.  Gene #1922: 'ORC4L MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ORC4L MUTATED 6 0 0 1
ORC4L WILD-TYPE 172 183 101 19

Figure S4944.  Get High-res Image Gene #1922: 'ORC4L MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ORC4L MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.391 (Fisher's exact test), Q value = 0.72

Table S20211.  Gene #1922: 'ORC4L MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ORC4L MUTATED 1 0 3
ORC4L WILD-TYPE 86 80 97
'ORC4L MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.875 (Fisher's exact test), Q value = 1

Table S20212.  Gene #1922: 'ORC4L MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ORC4L MUTATED 1 2 3
ORC4L WILD-TYPE 88 158 135
'ORC4L MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.58 (Fisher's exact test), Q value = 0.89

Table S20213.  Gene #1922: 'ORC4L MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ORC4L MUTATED 3 3 0
ORC4L WILD-TYPE 179 130 72
'ORC4L MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.262 (Fisher's exact test), Q value = 0.59

Table S20214.  Gene #1922: 'ORC4L MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ORC4L MUTATED 0 3 1 3
ORC4L WILD-TYPE 112 93 91 183
'ORC4L MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0949 (Fisher's exact test), Q value = 0.34

Table S20215.  Gene #1922: 'ORC4L MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ORC4L MUTATED 0 2 1 1 0 0 3
ORC4L WILD-TYPE 60 48 48 39 63 125 96
'ORC4L MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.261 (Fisher's exact test), Q value = 0.58

Table S20216.  Gene #1922: 'ORC4L MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ORC4L MUTATED 4 0 0 2
ORC4L WILD-TYPE 126 78 68 194
'ORC4L MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.155 (Fisher's exact test), Q value = 0.44

Table S20217.  Gene #1922: 'ORC4L MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ORC4L MUTATED 1 0 2 1 1 0 1 0 0
ORC4L WILD-TYPE 39 62 26 79 68 48 42 28 74
'LRRN1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0052 (Fisher's exact test), Q value = 0.065

Table S20218.  Gene #1923: 'LRRN1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
LRRN1 MUTATED 2 0 0 4
LRRN1 WILD-TYPE 44 58 64 39

Figure S4945.  Get High-res Image Gene #1923: 'LRRN1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'LRRN1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0148 (Fisher's exact test), Q value = 0.12

Table S20219.  Gene #1923: 'LRRN1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
LRRN1 MUTATED 4 0 2
LRRN1 WILD-TYPE 47 83 75

Figure S4946.  Get High-res Image Gene #1923: 'LRRN1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'LRRN1 MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S20220.  Gene #1923: 'LRRN1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
LRRN1 MUTATED 18 0 1 0
LRRN1 WILD-TYPE 160 183 100 20

Figure S4947.  Get High-res Image Gene #1923: 'LRRN1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'LRRN1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0107 (Fisher's exact test), Q value = 0.099

Table S20221.  Gene #1923: 'LRRN1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
LRRN1 MUTATED 4 0 9
LRRN1 WILD-TYPE 83 80 91

Figure S4948.  Get High-res Image Gene #1923: 'LRRN1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'LRRN1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.282 (Fisher's exact test), Q value = 0.61

Table S20222.  Gene #1923: 'LRRN1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
LRRN1 MUTATED 4 3 7
LRRN1 WILD-TYPE 85 157 131
'LRRN1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.275 (Fisher's exact test), Q value = 0.6

Table S20223.  Gene #1923: 'LRRN1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
LRRN1 MUTATED 9 2 3
LRRN1 WILD-TYPE 173 131 69
'LRRN1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.036 (Fisher's exact test), Q value = 0.2

Table S20224.  Gene #1923: 'LRRN1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
LRRN1 MUTATED 1 6 7 5
LRRN1 WILD-TYPE 111 90 85 181

Figure S4949.  Get High-res Image Gene #1923: 'LRRN1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'LRRN1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 2e-05 (Fisher's exact test), Q value = 0.0017

Table S20225.  Gene #1923: 'LRRN1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
LRRN1 MUTATED 1 2 10 1 1 0 4
LRRN1 WILD-TYPE 59 48 39 39 62 125 95

Figure S4950.  Get High-res Image Gene #1923: 'LRRN1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'LRRN1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.222 (Fisher's exact test), Q value = 0.54

Table S20226.  Gene #1923: 'LRRN1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
LRRN1 MUTATED 7 4 0 7
LRRN1 WILD-TYPE 123 74 68 189
'LRRN1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 5e-05 (Fisher's exact test), Q value = 0.0032

Table S20227.  Gene #1923: 'LRRN1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
LRRN1 MUTATED 2 6 1 0 9 0 0 0 0
LRRN1 WILD-TYPE 38 56 27 80 60 48 43 28 74

Figure S4951.  Get High-res Image Gene #1923: 'LRRN1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'LRRN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00014 (Fisher's exact test), Q value = 0.0066

Table S20228.  Gene #1923: 'LRRN1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
LRRN1 MUTATED 1 0 0 6
LRRN1 WILD-TYPE 32 31 27 13

Figure S4952.  Get High-res Image Gene #1923: 'LRRN1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'LRRN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.339 (Fisher's exact test), Q value = 0.67

Table S20229.  Gene #1923: 'LRRN1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
LRRN1 MUTATED 6 0 1 0
LRRN1 WILD-TYPE 48 10 23 22
'KIAA1267 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0911 (Fisher's exact test), Q value = 0.33

Table S20230.  Gene #1924: 'KIAA1267 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
KIAA1267 MUTATED 4 0 2 1
KIAA1267 WILD-TYPE 42 58 62 42
'KIAA1267 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.104 (Fisher's exact test), Q value = 0.36

Table S20231.  Gene #1924: 'KIAA1267 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
KIAA1267 MUTATED 4 1 2
KIAA1267 WILD-TYPE 47 82 75
'KIAA1267 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00098 (Fisher's exact test), Q value = 0.024

Table S20232.  Gene #1924: 'KIAA1267 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
KIAA1267 MUTATED 15 1 3 0
KIAA1267 WILD-TYPE 163 182 98 20

Figure S4953.  Get High-res Image Gene #1924: 'KIAA1267 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'KIAA1267 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0242 (Fisher's exact test), Q value = 0.16

Table S20233.  Gene #1924: 'KIAA1267 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
KIAA1267 MUTATED 7 0 4
KIAA1267 WILD-TYPE 80 80 96

Figure S4954.  Get High-res Image Gene #1924: 'KIAA1267 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'KIAA1267 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S20234.  Gene #1924: 'KIAA1267 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
KIAA1267 MUTATED 3 6 6
KIAA1267 WILD-TYPE 86 154 132
'KIAA1267 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.537 (Fisher's exact test), Q value = 0.86

Table S20235.  Gene #1924: 'KIAA1267 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
KIAA1267 MUTATED 5 7 3
KIAA1267 WILD-TYPE 177 126 69
'KIAA1267 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.116 (Fisher's exact test), Q value = 0.38

Table S20236.  Gene #1924: 'KIAA1267 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
KIAA1267 MUTATED 1 7 4 7
KIAA1267 WILD-TYPE 111 89 88 179
'KIAA1267 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0042 (Fisher's exact test), Q value = 0.059

Table S20237.  Gene #1924: 'KIAA1267 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
KIAA1267 MUTATED 1 1 8 1 1 2 5
KIAA1267 WILD-TYPE 59 49 41 39 62 123 94

Figure S4955.  Get High-res Image Gene #1924: 'KIAA1267 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'KIAA1267 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.265 (Fisher's exact test), Q value = 0.59

Table S20238.  Gene #1924: 'KIAA1267 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
KIAA1267 MUTATED 6 4 0 9
KIAA1267 WILD-TYPE 124 74 68 187
'KIAA1267 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00045 (Fisher's exact test), Q value = 0.014

Table S20239.  Gene #1924: 'KIAA1267 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
KIAA1267 MUTATED 1 6 0 0 9 0 0 1 2
KIAA1267 WILD-TYPE 39 56 28 80 60 48 43 27 72

Figure S4956.  Get High-res Image Gene #1924: 'KIAA1267 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'KIAA1267 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0854 (Fisher's exact test), Q value = 0.32

Table S20240.  Gene #1924: 'KIAA1267 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
KIAA1267 MUTATED 1 1 0 3
KIAA1267 WILD-TYPE 32 30 27 16
'KIAA1267 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.578 (Fisher's exact test), Q value = 0.88

Table S20241.  Gene #1924: 'KIAA1267 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
KIAA1267 MUTATED 3 0 2 0
KIAA1267 WILD-TYPE 51 10 22 22
'RPS6KA6 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.697 (Fisher's exact test), Q value = 0.97

Table S20242.  Gene #1925: 'RPS6KA6 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
RPS6KA6 MUTATED 2 1 1 2
RPS6KA6 WILD-TYPE 44 57 63 41
'RPS6KA6 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.656 (Fisher's exact test), Q value = 0.94

Table S20243.  Gene #1925: 'RPS6KA6 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
RPS6KA6 MUTATED 2 3 1
RPS6KA6 WILD-TYPE 49 80 76
'RPS6KA6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.25 (Fisher's exact test), Q value = 0.58

Table S20244.  Gene #1925: 'RPS6KA6 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
RPS6KA6 MUTATED 11 5 2 0
RPS6KA6 WILD-TYPE 167 178 99 20
'RPS6KA6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.864 (Fisher's exact test), Q value = 1

Table S20245.  Gene #1925: 'RPS6KA6 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
RPS6KA6 MUTATED 3 3 5
RPS6KA6 WILD-TYPE 84 77 95
'RPS6KA6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.523 (Fisher's exact test), Q value = 0.84

Table S20246.  Gene #1925: 'RPS6KA6 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
RPS6KA6 MUTATED 5 6 4
RPS6KA6 WILD-TYPE 84 154 134
'RPS6KA6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.51 (Fisher's exact test), Q value = 0.83

Table S20247.  Gene #1925: 'RPS6KA6 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
RPS6KA6 MUTATED 9 5 1
RPS6KA6 WILD-TYPE 173 128 71
'RPS6KA6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.652 (Fisher's exact test), Q value = 0.94

Table S20248.  Gene #1925: 'RPS6KA6 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
RPS6KA6 MUTATED 2 4 4 8
RPS6KA6 WILD-TYPE 110 92 88 178
'RPS6KA6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.123 (Fisher's exact test), Q value = 0.39

Table S20249.  Gene #1925: 'RPS6KA6 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
RPS6KA6 MUTATED 3 1 5 1 0 3 5
RPS6KA6 WILD-TYPE 57 49 44 39 63 122 94
'RPS6KA6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.163 (Fisher's exact test), Q value = 0.46

Table S20250.  Gene #1925: 'RPS6KA6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
RPS6KA6 MUTATED 8 2 0 8
RPS6KA6 WILD-TYPE 122 76 68 188
'RPS6KA6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.219 (Fisher's exact test), Q value = 0.53

Table S20251.  Gene #1925: 'RPS6KA6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
RPS6KA6 MUTATED 3 3 2 3 4 0 0 2 1
RPS6KA6 WILD-TYPE 37 59 26 77 65 48 43 26 73
'RPS6KA6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00255 (Fisher's exact test), Q value = 0.044

Table S20252.  Gene #1925: 'RPS6KA6 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
RPS6KA6 MUTATED 0 1 0 4
RPS6KA6 WILD-TYPE 33 30 27 15

Figure S4957.  Get High-res Image Gene #1925: 'RPS6KA6 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'RPS6KA6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.755 (Fisher's exact test), Q value = 1

Table S20253.  Gene #1925: 'RPS6KA6 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
RPS6KA6 MUTATED 4 0 1 0
RPS6KA6 WILD-TYPE 50 10 23 22
'GPRIN3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.073 (Fisher's exact test), Q value = 0.29

Table S20254.  Gene #1926: 'GPRIN3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
GPRIN3 MUTATED 2 0 0 2
GPRIN3 WILD-TYPE 44 58 64 41
'GPRIN3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.039 (Fisher's exact test), Q value = 0.21

Table S20255.  Gene #1926: 'GPRIN3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
GPRIN3 MUTATED 3 0 1
GPRIN3 WILD-TYPE 48 83 76

Figure S4958.  Get High-res Image Gene #1926: 'GPRIN3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'GPRIN3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.491 (Fisher's exact test), Q value = 0.82

Table S20256.  Gene #1926: 'GPRIN3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
GPRIN3 MUTATED 6 2 2 0
GPRIN3 WILD-TYPE 172 181 99 20
'GPRIN3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.523 (Fisher's exact test), Q value = 0.84

Table S20257.  Gene #1926: 'GPRIN3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
GPRIN3 MUTATED 3 2 1
GPRIN3 WILD-TYPE 84 78 99
'GPRIN3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00484 (Fisher's exact test), Q value = 0.063

Table S20258.  Gene #1926: 'GPRIN3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
GPRIN3 MUTATED 1 0 7
GPRIN3 WILD-TYPE 88 160 131

Figure S4959.  Get High-res Image Gene #1926: 'GPRIN3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'GPRIN3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.811 (Fisher's exact test), Q value = 1

Table S20259.  Gene #1926: 'GPRIN3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
GPRIN3 MUTATED 4 2 2
GPRIN3 WILD-TYPE 178 131 70
'GPRIN3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.225 (Fisher's exact test), Q value = 0.54

Table S20260.  Gene #1926: 'GPRIN3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
GPRIN3 MUTATED 2 0 4 4
GPRIN3 WILD-TYPE 110 96 88 182
'GPRIN3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0712 (Fisher's exact test), Q value = 0.29

Table S20261.  Gene #1926: 'GPRIN3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
GPRIN3 MUTATED 0 1 2 2 1 0 4
GPRIN3 WILD-TYPE 60 49 47 38 62 125 95
'GPRIN3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.782 (Fisher's exact test), Q value = 1

Table S20262.  Gene #1926: 'GPRIN3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
GPRIN3 MUTATED 2 2 2 3
GPRIN3 WILD-TYPE 128 76 66 193
'GPRIN3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.801 (Fisher's exact test), Q value = 1

Table S20263.  Gene #1926: 'GPRIN3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
GPRIN3 MUTATED 1 1 0 1 2 0 2 1 1
GPRIN3 WILD-TYPE 39 61 28 79 67 48 41 27 73
'DHDDS MUTATION STATUS' versus 'CN_CNMF'

P value = 0.182 (Fisher's exact test), Q value = 0.48

Table S20264.  Gene #1927: 'DHDDS MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
DHDDS MUTATED 5 1 0 0
DHDDS WILD-TYPE 173 182 101 20
'DHDDS MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.629 (Fisher's exact test), Q value = 0.93

Table S20265.  Gene #1927: 'DHDDS MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
DHDDS MUTATED 1 1 3
DHDDS WILD-TYPE 86 79 97
'DHDDS MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.453 (Fisher's exact test), Q value = 0.78

Table S20266.  Gene #1927: 'DHDDS MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
DHDDS MUTATED 2 1 1
DHDDS WILD-TYPE 87 159 137
'DHDDS MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.251 (Fisher's exact test), Q value = 0.58

Table S20267.  Gene #1927: 'DHDDS MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
DHDDS MUTATED 1 1 2
DHDDS WILD-TYPE 181 132 70
'DHDDS MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.152 (Fisher's exact test), Q value = 0.44

Table S20268.  Gene #1927: 'DHDDS MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
DHDDS MUTATED 2 3 0 1
DHDDS WILD-TYPE 110 93 92 185
'DHDDS MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.148 (Fisher's exact test), Q value = 0.43

Table S20269.  Gene #1927: 'DHDDS MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
DHDDS MUTATED 1 1 2 1 0 0 1
DHDDS WILD-TYPE 59 49 47 39 63 125 98
'DHDDS MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.401 (Fisher's exact test), Q value = 0.73

Table S20270.  Gene #1927: 'DHDDS MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
DHDDS MUTATED 2 0 2 2
DHDDS WILD-TYPE 128 78 66 194
'DHDDS MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.119 (Fisher's exact test), Q value = 0.38

Table S20271.  Gene #1927: 'DHDDS MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
DHDDS MUTATED 1 0 1 0 2 2 0 0 0
DHDDS WILD-TYPE 39 62 27 80 67 46 43 28 74
'ARL11 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0991 (Fisher's exact test), Q value = 0.35

Table S20272.  Gene #1928: 'ARL11 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ARL11 MUTATED 5 0 2 0
ARL11 WILD-TYPE 173 183 99 20
'ARL11 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S20273.  Gene #1928: 'ARL11 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ARL11 MUTATED 2 1 2
ARL11 WILD-TYPE 85 79 98
'ARL11 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.329 (Fisher's exact test), Q value = 0.66

Table S20274.  Gene #1928: 'ARL11 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ARL11 MUTATED 1 1 4
ARL11 WILD-TYPE 88 159 134
'ARL11 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.338 (Fisher's exact test), Q value = 0.67

Table S20275.  Gene #1928: 'ARL11 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ARL11 MUTATED 5 1 0
ARL11 WILD-TYPE 177 132 72
'ARL11 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.76 (Fisher's exact test), Q value = 1

Table S20276.  Gene #1928: 'ARL11 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ARL11 MUTATED 1 2 2 2
ARL11 WILD-TYPE 111 94 90 184
'ARL11 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.106 (Fisher's exact test), Q value = 0.36

Table S20277.  Gene #1928: 'ARL11 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ARL11 MUTATED 1 2 2 0 0 0 2
ARL11 WILD-TYPE 59 48 47 40 63 125 97
'ARL11 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.323 (Fisher's exact test), Q value = 0.65

Table S20278.  Gene #1928: 'ARL11 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ARL11 MUTATED 4 0 0 3
ARL11 WILD-TYPE 126 78 68 193
'ARL11 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.539 (Fisher's exact test), Q value = 0.86

Table S20279.  Gene #1928: 'ARL11 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ARL11 MUTATED 1 2 1 1 2 0 0 0 0
ARL11 WILD-TYPE 39 60 27 79 67 48 43 28 74
'ATP2A2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00861 (Fisher's exact test), Q value = 0.087

Table S20280.  Gene #1929: 'ATP2A2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ATP2A2 MUTATED 3 0 0 3
ATP2A2 WILD-TYPE 43 58 64 40

Figure S4960.  Get High-res Image Gene #1929: 'ATP2A2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'ATP2A2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0015 (Fisher's exact test), Q value = 0.032

Table S20281.  Gene #1929: 'ATP2A2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ATP2A2 MUTATED 5 0 1
ATP2A2 WILD-TYPE 46 83 76

Figure S4961.  Get High-res Image Gene #1929: 'ATP2A2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'ATP2A2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00126 (Fisher's exact test), Q value = 0.029

Table S20282.  Gene #1929: 'ATP2A2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ATP2A2 MUTATED 13 2 0 0
ATP2A2 WILD-TYPE 165 181 101 20

Figure S4962.  Get High-res Image Gene #1929: 'ATP2A2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ATP2A2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.124 (Fisher's exact test), Q value = 0.39

Table S20283.  Gene #1929: 'ATP2A2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ATP2A2 MUTATED 2 1 7
ATP2A2 WILD-TYPE 85 79 93
'ATP2A2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0509 (Fisher's exact test), Q value = 0.24

Table S20284.  Gene #1929: 'ATP2A2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ATP2A2 MUTATED 0 6 8
ATP2A2 WILD-TYPE 89 154 130
'ATP2A2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.135 (Fisher's exact test), Q value = 0.41

Table S20285.  Gene #1929: 'ATP2A2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ATP2A2 MUTATED 7 7 0
ATP2A2 WILD-TYPE 175 126 72
'ATP2A2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.615 (Fisher's exact test), Q value = 0.91

Table S20286.  Gene #1929: 'ATP2A2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ATP2A2 MUTATED 2 5 3 6
ATP2A2 WILD-TYPE 110 91 89 180
'ATP2A2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00087 (Fisher's exact test), Q value = 0.022

Table S20287.  Gene #1929: 'ATP2A2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ATP2A2 MUTATED 2 2 5 0 0 0 7
ATP2A2 WILD-TYPE 58 48 44 40 63 125 92

Figure S4963.  Get High-res Image Gene #1929: 'ATP2A2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ATP2A2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.214 (Fisher's exact test), Q value = 0.52

Table S20288.  Gene #1929: 'ATP2A2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ATP2A2 MUTATED 6 0 1 7
ATP2A2 WILD-TYPE 124 78 67 189
'ATP2A2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00733 (Fisher's exact test), Q value = 0.079

Table S20289.  Gene #1929: 'ATP2A2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ATP2A2 MUTATED 0 1 3 1 7 0 1 0 1
ATP2A2 WILD-TYPE 40 61 25 79 62 48 42 28 73

Figure S4964.  Get High-res Image Gene #1929: 'ATP2A2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'HSF5 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.12 (Fisher's exact test), Q value = 0.39

Table S20290.  Gene #1930: 'HSF5 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
HSF5 MUTATED 2 0 0 1
HSF5 WILD-TYPE 44 58 64 42
'HSF5 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.252 (Fisher's exact test), Q value = 0.58

Table S20291.  Gene #1930: 'HSF5 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
HSF5 MUTATED 2 1 0
HSF5 WILD-TYPE 49 82 77
'HSF5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.23 (Fisher's exact test), Q value = 0.55

Table S20292.  Gene #1930: 'HSF5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
HSF5 MUTATED 4 3 0 1
HSF5 WILD-TYPE 174 180 101 19
'HSF5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.739 (Fisher's exact test), Q value = 1

Table S20293.  Gene #1930: 'HSF5 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
HSF5 MUTATED 2 2 1
HSF5 WILD-TYPE 85 78 99
'HSF5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.197 (Fisher's exact test), Q value = 0.5

Table S20294.  Gene #1930: 'HSF5 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
HSF5 MUTATED 0 5 2
HSF5 WILD-TYPE 89 155 136
'HSF5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.164 (Fisher's exact test), Q value = 0.46

Table S20295.  Gene #1930: 'HSF5 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
HSF5 MUTATED 1 4 2
HSF5 WILD-TYPE 181 129 70
'HSF5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S20296.  Gene #1930: 'HSF5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
HSF5 MUTATED 2 2 1 3
HSF5 WILD-TYPE 110 94 91 183
'HSF5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0636 (Fisher's exact test), Q value = 0.27

Table S20297.  Gene #1930: 'HSF5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
HSF5 MUTATED 0 3 1 0 1 0 3
HSF5 WILD-TYPE 60 47 48 40 62 125 96
'HSF5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.709 (Fisher's exact test), Q value = 0.98

Table S20298.  Gene #1930: 'HSF5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
HSF5 MUTATED 3 0 1 4
HSF5 WILD-TYPE 127 78 67 192
'HSF5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.631 (Fisher's exact test), Q value = 0.93

Table S20299.  Gene #1930: 'HSF5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
HSF5 MUTATED 1 0 1 1 3 1 0 0 1
HSF5 WILD-TYPE 39 62 27 79 66 47 43 28 73
'HSF5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.781 (Fisher's exact test), Q value = 1

Table S20300.  Gene #1930: 'HSF5 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
HSF5 MUTATED 1 0 1 1
HSF5 WILD-TYPE 32 31 26 18
'HSF5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.311 (Fisher's exact test), Q value = 0.64

Table S20301.  Gene #1930: 'HSF5 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
HSF5 MUTATED 1 1 1 0
HSF5 WILD-TYPE 53 9 23 22
'ACCN5 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00354 (Fisher's exact test), Q value = 0.054

Table S20302.  Gene #1931: 'ACCN5 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ACCN5 MUTATED 1 0 0 4
ACCN5 WILD-TYPE 45 58 64 39

Figure S4965.  Get High-res Image Gene #1931: 'ACCN5 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'ACCN5 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S20303.  Gene #1931: 'ACCN5 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ACCN5 MUTATED 1 2 2
ACCN5 WILD-TYPE 50 81 75
'ACCN5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.267 (Fisher's exact test), Q value = 0.59

Table S20304.  Gene #1931: 'ACCN5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ACCN5 MUTATED 9 3 2 0
ACCN5 WILD-TYPE 169 180 99 20
'ACCN5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.763 (Fisher's exact test), Q value = 1

Table S20305.  Gene #1931: 'ACCN5 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ACCN5 MUTATED 4 2 3
ACCN5 WILD-TYPE 83 78 97
'ACCN5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.116 (Fisher's exact test), Q value = 0.38

Table S20306.  Gene #1931: 'ACCN5 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ACCN5 MUTATED 0 4 6
ACCN5 WILD-TYPE 89 156 132
'ACCN5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.327 (Fisher's exact test), Q value = 0.66

Table S20307.  Gene #1931: 'ACCN5 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ACCN5 MUTATED 5 5 0
ACCN5 WILD-TYPE 177 128 72
'ACCN5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.945 (Fisher's exact test), Q value = 1

Table S20308.  Gene #1931: 'ACCN5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ACCN5 MUTATED 4 3 2 5
ACCN5 WILD-TYPE 108 93 90 181
'ACCN5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0275 (Fisher's exact test), Q value = 0.17

Table S20309.  Gene #1931: 'ACCN5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ACCN5 MUTATED 5 3 1 0 0 1 4
ACCN5 WILD-TYPE 55 47 48 40 63 124 95

Figure S4966.  Get High-res Image Gene #1931: 'ACCN5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ACCN5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.248 (Fisher's exact test), Q value = 0.57

Table S20310.  Gene #1931: 'ACCN5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ACCN5 MUTATED 6 0 2 5
ACCN5 WILD-TYPE 124 78 66 191
'ACCN5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.751 (Fisher's exact test), Q value = 1

Table S20311.  Gene #1931: 'ACCN5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ACCN5 MUTATED 2 2 1 2 3 0 2 0 1
ACCN5 WILD-TYPE 38 60 27 78 66 48 41 28 73
'ACCN5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.784 (Fisher's exact test), Q value = 1

Table S20312.  Gene #1931: 'ACCN5 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
ACCN5 MUTATED 1 0 1 1
ACCN5 WILD-TYPE 32 31 26 18
'ACCN5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S20313.  Gene #1931: 'ACCN5 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
ACCN5 MUTATED 2 0 1 0
ACCN5 WILD-TYPE 52 10 23 22
'LRRTM2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.132 (Fisher's exact test), Q value = 0.41

Table S20314.  Gene #1932: 'LRRTM2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
LRRTM2 MUTATED 1 0 1 3
LRRTM2 WILD-TYPE 45 58 63 40
'LRRTM2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0666 (Fisher's exact test), Q value = 0.28

Table S20315.  Gene #1932: 'LRRTM2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
LRRTM2 MUTATED 1 0 4
LRRTM2 WILD-TYPE 50 83 73
'LRRTM2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.109 (Fisher's exact test), Q value = 0.37

Table S20316.  Gene #1932: 'LRRTM2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
LRRTM2 MUTATED 7 2 0 0
LRRTM2 WILD-TYPE 171 181 101 20
'LRRTM2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0186 (Fisher's exact test), Q value = 0.14

Table S20317.  Gene #1932: 'LRRTM2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
LRRTM2 MUTATED 4 0 0
LRRTM2 WILD-TYPE 83 80 100

Figure S4967.  Get High-res Image Gene #1932: 'LRRTM2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'LRRTM2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0803 (Fisher's exact test), Q value = 0.31

Table S20318.  Gene #1932: 'LRRTM2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
LRRTM2 MUTATED 0 1 5
LRRTM2 WILD-TYPE 89 159 133
'LRRTM2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.336 (Fisher's exact test), Q value = 0.66

Table S20319.  Gene #1932: 'LRRTM2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
LRRTM2 MUTATED 5 1 0
LRRTM2 WILD-TYPE 177 132 72
'LRRTM2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S20320.  Gene #1932: 'LRRTM2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
LRRTM2 MUTATED 2 2 1 4
LRRTM2 WILD-TYPE 110 94 91 182
'LRRTM2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.67 (Fisher's exact test), Q value = 0.95

Table S20321.  Gene #1932: 'LRRTM2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
LRRTM2 MUTATED 2 2 1 0 0 2 2
LRRTM2 WILD-TYPE 58 48 48 40 63 123 97
'LRRTM2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.341 (Fisher's exact test), Q value = 0.67

Table S20322.  Gene #1932: 'LRRTM2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
LRRTM2 MUTATED 4 0 0 4
LRRTM2 WILD-TYPE 126 78 68 192
'LRRTM2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.117 (Fisher's exact test), Q value = 0.38

Table S20323.  Gene #1932: 'LRRTM2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
LRRTM2 MUTATED 2 1 2 1 1 0 0 1 0
LRRTM2 WILD-TYPE 38 61 26 79 68 48 43 27 74
'ATR MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00349 (Fisher's exact test), Q value = 0.054

Table S20324.  Gene #1933: 'ATR MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ATR MUTATED 5 1 0 5
ATR WILD-TYPE 41 57 64 38

Figure S4968.  Get High-res Image Gene #1933: 'ATR MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'ATR MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.274 (Fisher's exact test), Q value = 0.6

Table S20325.  Gene #1933: 'ATR MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ATR MUTATED 5 3 3
ATR WILD-TYPE 46 80 74
'ATR MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00446 (Fisher's exact test), Q value = 0.061

Table S20326.  Gene #1933: 'ATR MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ATR MUTATED 22 7 3 1
ATR WILD-TYPE 156 176 98 19

Figure S4969.  Get High-res Image Gene #1933: 'ATR MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ATR MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.723 (Fisher's exact test), Q value = 0.99

Table S20327.  Gene #1933: 'ATR MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ATR MUTATED 6 6 10
ATR WILD-TYPE 81 74 90
'ATR MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.315 (Fisher's exact test), Q value = 0.64

Table S20328.  Gene #1933: 'ATR MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ATR MUTATED 3 13 11
ATR WILD-TYPE 86 147 127
'ATR MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.749 (Fisher's exact test), Q value = 1

Table S20329.  Gene #1933: 'ATR MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ATR MUTATED 11 11 5
ATR WILD-TYPE 171 122 67
'ATR MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.743 (Fisher's exact test), Q value = 1

Table S20330.  Gene #1933: 'ATR MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ATR MUTATED 7 9 6 11
ATR WILD-TYPE 105 87 86 175
'ATR MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0263 (Fisher's exact test), Q value = 0.16

Table S20331.  Gene #1933: 'ATR MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ATR MUTATED 7 5 5 4 2 2 8
ATR WILD-TYPE 53 45 44 36 61 123 91

Figure S4970.  Get High-res Image Gene #1933: 'ATR MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ATR MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0103 (Fisher's exact test), Q value = 0.097

Table S20332.  Gene #1933: 'ATR MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ATR MUTATED 17 3 1 12
ATR WILD-TYPE 113 75 67 184

Figure S4971.  Get High-res Image Gene #1933: 'ATR MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'ATR MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00698 (Fisher's exact test), Q value = 0.077

Table S20333.  Gene #1933: 'ATR MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ATR MUTATED 5 4 5 4 8 3 4 0 0
ATR WILD-TYPE 35 58 23 76 61 45 39 28 74

Figure S4972.  Get High-res Image Gene #1933: 'ATR MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'ATR MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0945 (Fisher's exact test), Q value = 0.34

Table S20334.  Gene #1933: 'ATR MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
ATR MUTATED 2 0 0 2
ATR WILD-TYPE 31 31 27 17
'ATR MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S20335.  Gene #1933: 'ATR MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
ATR MUTATED 2 0 1 1
ATR WILD-TYPE 52 10 23 21
'FBLIM1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0945 (Fisher's exact test), Q value = 0.34

Table S20336.  Gene #1934: 'FBLIM1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
FBLIM1 MUTATED 5 0 1 0
FBLIM1 WILD-TYPE 173 183 100 20
'FBLIM1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.195 (Fisher's exact test), Q value = 0.5

Table S20337.  Gene #1934: 'FBLIM1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
FBLIM1 MUTATED 1 0 4
FBLIM1 WILD-TYPE 86 80 96
'FBLIM1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S20338.  Gene #1934: 'FBLIM1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
FBLIM1 MUTATED 1 2 2
FBLIM1 WILD-TYPE 88 158 136
'FBLIM1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S20339.  Gene #1934: 'FBLIM1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
FBLIM1 MUTATED 2 2 1
FBLIM1 WILD-TYPE 180 131 71
'FBLIM1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00254 (Fisher's exact test), Q value = 0.044

Table S20340.  Gene #1934: 'FBLIM1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
FBLIM1 MUTATED 0 5 0 1
FBLIM1 WILD-TYPE 112 91 92 185

Figure S4973.  Get High-res Image Gene #1934: 'FBLIM1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'FBLIM1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00764 (Fisher's exact test), Q value = 0.082

Table S20341.  Gene #1934: 'FBLIM1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
FBLIM1 MUTATED 0 0 3 2 0 1 0
FBLIM1 WILD-TYPE 60 50 46 38 63 124 99

Figure S4974.  Get High-res Image Gene #1934: 'FBLIM1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'FBLIM1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0389 (Fisher's exact test), Q value = 0.21

Table S20342.  Gene #1934: 'FBLIM1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
FBLIM1 MUTATED 5 0 0 1
FBLIM1 WILD-TYPE 125 78 68 195

Figure S4975.  Get High-res Image Gene #1934: 'FBLIM1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'FBLIM1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.453 (Fisher's exact test), Q value = 0.78

Table S20343.  Gene #1934: 'FBLIM1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
FBLIM1 MUTATED 2 1 0 1 2 0 0 0 0
FBLIM1 WILD-TYPE 38 61 28 79 67 48 43 28 74
'CCDC14 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.122 (Fisher's exact test), Q value = 0.39

Table S20344.  Gene #1935: 'CCDC14 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
CCDC14 MUTATED 2 0 0 1
CCDC14 WILD-TYPE 44 58 64 42
'CCDC14 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0137 (Fisher's exact test), Q value = 0.12

Table S20345.  Gene #1935: 'CCDC14 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
CCDC14 MUTATED 3 0 0
CCDC14 WILD-TYPE 48 83 77

Figure S4976.  Get High-res Image Gene #1935: 'CCDC14 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'CCDC14 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00508 (Fisher's exact test), Q value = 0.064

Table S20346.  Gene #1935: 'CCDC14 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
CCDC14 MUTATED 10 1 0 0
CCDC14 WILD-TYPE 168 182 101 20

Figure S4977.  Get High-res Image Gene #1935: 'CCDC14 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'CCDC14 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0784 (Fisher's exact test), Q value = 0.3

Table S20347.  Gene #1935: 'CCDC14 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
CCDC14 MUTATED 5 0 3
CCDC14 WILD-TYPE 82 80 97
'CCDC14 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.136 (Fisher's exact test), Q value = 0.41

Table S20348.  Gene #1935: 'CCDC14 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
CCDC14 MUTATED 3 1 5
CCDC14 WILD-TYPE 86 159 133
'CCDC14 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.605 (Fisher's exact test), Q value = 0.91

Table S20349.  Gene #1935: 'CCDC14 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
CCDC14 MUTATED 6 2 1
CCDC14 WILD-TYPE 176 131 71
'CCDC14 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.466 (Fisher's exact test), Q value = 0.79

Table S20350.  Gene #1935: 'CCDC14 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
CCDC14 MUTATED 1 2 4 4
CCDC14 WILD-TYPE 111 94 88 182
'CCDC14 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0576 (Fisher's exact test), Q value = 0.26

Table S20351.  Gene #1935: 'CCDC14 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
CCDC14 MUTATED 0 1 3 1 2 0 4
CCDC14 WILD-TYPE 60 49 46 39 61 125 95
'CCDC14 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.475 (Fisher's exact test), Q value = 0.8

Table S20352.  Gene #1935: 'CCDC14 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
CCDC14 MUTATED 3 3 0 4
CCDC14 WILD-TYPE 127 75 68 192
'CCDC14 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.763 (Fisher's exact test), Q value = 1

Table S20353.  Gene #1935: 'CCDC14 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
CCDC14 MUTATED 1 2 1 1 3 0 0 0 2
CCDC14 WILD-TYPE 39 60 27 79 66 48 43 28 72
'CCDC14 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.135 (Fisher's exact test), Q value = 0.41

Table S20354.  Gene #1935: 'CCDC14 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
CCDC14 MUTATED 1 0 0 2
CCDC14 WILD-TYPE 32 31 27 17
'CCDC14 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.563 (Fisher's exact test), Q value = 0.87

Table S20355.  Gene #1935: 'CCDC14 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
CCDC14 MUTATED 3 0 0 0
CCDC14 WILD-TYPE 51 10 24 22
'SKAP2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.63 (Fisher's exact test), Q value = 0.93

Table S20356.  Gene #1936: 'SKAP2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
SKAP2 MUTATED 1 1 0 1
SKAP2 WILD-TYPE 45 57 64 42
'SKAP2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.251 (Fisher's exact test), Q value = 0.58

Table S20357.  Gene #1936: 'SKAP2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
SKAP2 MUTATED 2 1 0
SKAP2 WILD-TYPE 49 82 77
'SKAP2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.384 (Fisher's exact test), Q value = 0.71

Table S20358.  Gene #1936: 'SKAP2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
SKAP2 MUTATED 4 1 0 0
SKAP2 WILD-TYPE 174 182 101 20
'SKAP2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.295 (Fisher's exact test), Q value = 0.62

Table S20359.  Gene #1936: 'SKAP2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
SKAP2 MUTATED 2 1 0
SKAP2 WILD-TYPE 85 79 100
'SKAP2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.363 (Fisher's exact test), Q value = 0.69

Table S20360.  Gene #1936: 'SKAP2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
SKAP2 MUTATED 0 1 3
SKAP2 WILD-TYPE 89 159 135
'SKAP2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.83 (Fisher's exact test), Q value = 1

Table S20361.  Gene #1936: 'SKAP2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
SKAP2 MUTATED 2 2 0
SKAP2 WILD-TYPE 180 131 72
'SKAP2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S20362.  Gene #1936: 'SKAP2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
SKAP2 MUTATED 1 1 1 2
SKAP2 WILD-TYPE 111 95 91 184
'SKAP2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.704 (Fisher's exact test), Q value = 0.98

Table S20363.  Gene #1936: 'SKAP2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
SKAP2 MUTATED 0 1 1 0 0 1 2
SKAP2 WILD-TYPE 60 49 48 40 63 124 97
'SKAP2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.477 (Fisher's exact test), Q value = 0.81

Table S20364.  Gene #1936: 'SKAP2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
SKAP2 MUTATED 0 1 1 2
SKAP2 WILD-TYPE 130 77 67 194
'SKAP2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.841 (Fisher's exact test), Q value = 1

Table S20365.  Gene #1936: 'SKAP2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
SKAP2 MUTATED 0 1 0 0 1 0 0 0 2
SKAP2 WILD-TYPE 40 61 28 80 68 48 43 28 72
'MYO1D MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00393 (Fisher's exact test), Q value = 0.057

Table S20366.  Gene #1937: 'MYO1D MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
MYO1D MUTATED 1 0 0 4
MYO1D WILD-TYPE 45 58 64 39

Figure S4978.  Get High-res Image Gene #1937: 'MYO1D MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'MYO1D MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0461 (Fisher's exact test), Q value = 0.23

Table S20367.  Gene #1937: 'MYO1D MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
MYO1D MUTATED 3 0 2
MYO1D WILD-TYPE 48 83 75

Figure S4979.  Get High-res Image Gene #1937: 'MYO1D MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'MYO1D MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0358 (Fisher's exact test), Q value = 0.2

Table S20368.  Gene #1937: 'MYO1D MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
MYO1D MUTATED 8 1 1 1
MYO1D WILD-TYPE 170 182 100 19

Figure S4980.  Get High-res Image Gene #1937: 'MYO1D MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'MYO1D MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.522 (Fisher's exact test), Q value = 0.84

Table S20369.  Gene #1937: 'MYO1D MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
MYO1D MUTATED 3 2 1
MYO1D WILD-TYPE 84 78 99
'MYO1D MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.83 (Fisher's exact test), Q value = 1

Table S20370.  Gene #1937: 'MYO1D MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
MYO1D MUTATED 1 4 4
MYO1D WILD-TYPE 88 156 134
'MYO1D MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.545 (Fisher's exact test), Q value = 0.86

Table S20371.  Gene #1937: 'MYO1D MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
MYO1D MUTATED 4 2 3
MYO1D WILD-TYPE 178 131 69
'MYO1D MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.756 (Fisher's exact test), Q value = 1

Table S20372.  Gene #1937: 'MYO1D MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
MYO1D MUTATED 2 1 2 6
MYO1D WILD-TYPE 110 95 90 180
'MYO1D MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0659 (Fisher's exact test), Q value = 0.28

Table S20373.  Gene #1937: 'MYO1D MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
MYO1D MUTATED 2 0 1 2 1 0 5
MYO1D WILD-TYPE 58 50 48 38 62 125 94
'MYO1D MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.702 (Fisher's exact test), Q value = 0.97

Table S20374.  Gene #1937: 'MYO1D MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
MYO1D MUTATED 3 2 0 5
MYO1D WILD-TYPE 127 76 68 191
'MYO1D MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.551 (Fisher's exact test), Q value = 0.87

Table S20375.  Gene #1937: 'MYO1D MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
MYO1D MUTATED 2 2 1 1 3 0 0 0 1
MYO1D WILD-TYPE 38 60 27 79 66 48 43 28 73
'ZNF608 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.403 (Fisher's exact test), Q value = 0.73

Table S20376.  Gene #1938: 'ZNF608 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ZNF608 MUTATED 1 0 1 2
ZNF608 WILD-TYPE 45 58 63 41
'ZNF608 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.677 (Fisher's exact test), Q value = 0.96

Table S20377.  Gene #1938: 'ZNF608 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ZNF608 MUTATED 0 2 2
ZNF608 WILD-TYPE 51 81 75
'ZNF608 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0233 (Fisher's exact test), Q value = 0.16

Table S20378.  Gene #1938: 'ZNF608 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ZNF608 MUTATED 10 1 2 0
ZNF608 WILD-TYPE 168 182 99 20

Figure S4981.  Get High-res Image Gene #1938: 'ZNF608 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ZNF608 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.113 (Fisher's exact test), Q value = 0.37

Table S20379.  Gene #1938: 'ZNF608 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ZNF608 MUTATED 4 0 5
ZNF608 WILD-TYPE 83 80 95
'ZNF608 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.911 (Fisher's exact test), Q value = 1

Table S20380.  Gene #1938: 'ZNF608 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ZNF608 MUTATED 2 3 4
ZNF608 WILD-TYPE 87 157 134
'ZNF608 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.605 (Fisher's exact test), Q value = 0.91

Table S20381.  Gene #1938: 'ZNF608 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ZNF608 MUTATED 6 2 1
ZNF608 WILD-TYPE 176 131 71
'ZNF608 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.433 (Fisher's exact test), Q value = 0.76

Table S20382.  Gene #1938: 'ZNF608 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ZNF608 MUTATED 1 3 4 5
ZNF608 WILD-TYPE 111 93 88 181
'ZNF608 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.25 (Fisher's exact test), Q value = 0.58

Table S20383.  Gene #1938: 'ZNF608 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ZNF608 MUTATED 1 1 4 1 2 1 3
ZNF608 WILD-TYPE 59 49 45 39 61 124 96
'ZNF608 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.766 (Fisher's exact test), Q value = 1

Table S20384.  Gene #1938: 'ZNF608 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ZNF608 MUTATED 5 2 2 4
ZNF608 WILD-TYPE 125 76 66 192
'ZNF608 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.838 (Fisher's exact test), Q value = 1

Table S20385.  Gene #1938: 'ZNF608 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ZNF608 MUTATED 1 2 2 1 2 1 2 0 2
ZNF608 WILD-TYPE 39 60 26 79 67 47 41 28 72
'ZNF608 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.597 (Fisher's exact test), Q value = 0.9

Table S20386.  Gene #1938: 'ZNF608 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
ZNF608 MUTATED 2 0 1 1
ZNF608 WILD-TYPE 31 31 26 18
'ZNF608 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S20387.  Gene #1938: 'ZNF608 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
ZNF608 MUTATED 2 0 1 1
ZNF608 WILD-TYPE 52 10 23 21
'IDE MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.171 (Fisher's exact test), Q value = 0.47

Table S20388.  Gene #1939: 'IDE MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
IDE MUTATED 1 0 2 3
IDE WILD-TYPE 45 58 62 40
'IDE MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.445 (Fisher's exact test), Q value = 0.77

Table S20389.  Gene #1939: 'IDE MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
IDE MUTATED 0 3 3
IDE WILD-TYPE 51 80 74
'IDE MUTATION STATUS' versus 'CN_CNMF'

P value = 0.535 (Fisher's exact test), Q value = 0.85

Table S20390.  Gene #1939: 'IDE MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
IDE MUTATED 7 5 1 0
IDE WILD-TYPE 171 178 100 20
'IDE MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.161 (Fisher's exact test), Q value = 0.45

Table S20391.  Gene #1939: 'IDE MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
IDE MUTATED 0 3 4
IDE WILD-TYPE 87 77 96
'IDE MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0148 (Fisher's exact test), Q value = 0.12

Table S20392.  Gene #1939: 'IDE MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
IDE MUTATED 2 8 0
IDE WILD-TYPE 87 152 138

Figure S4982.  Get High-res Image Gene #1939: 'IDE MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'IDE MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.582 (Fisher's exact test), Q value = 0.89

Table S20393.  Gene #1939: 'IDE MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
IDE MUTATED 4 3 3
IDE WILD-TYPE 178 130 69
'IDE MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.87 (Fisher's exact test), Q value = 1

Table S20394.  Gene #1939: 'IDE MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
IDE MUTATED 2 2 3 6
IDE WILD-TYPE 110 94 89 180
'IDE MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.943 (Fisher's exact test), Q value = 1

Table S20395.  Gene #1939: 'IDE MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
IDE MUTATED 2 2 2 1 1 3 2
IDE WILD-TYPE 58 48 47 39 62 122 97
'IDE MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.794 (Fisher's exact test), Q value = 1

Table S20396.  Gene #1939: 'IDE MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
IDE MUTATED 4 1 1 7
IDE WILD-TYPE 126 77 67 189
'IDE MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.628 (Fisher's exact test), Q value = 0.92

Table S20397.  Gene #1939: 'IDE MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
IDE MUTATED 2 2 2 2 2 0 0 1 2
IDE WILD-TYPE 38 60 26 78 67 48 43 27 72
'BEX5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.154 (Fisher's exact test), Q value = 0.44

Table S20398.  Gene #1940: 'BEX5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
BEX5 MUTATED 2 1 4 0
BEX5 WILD-TYPE 176 182 97 20
'BEX5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S20399.  Gene #1940: 'BEX5 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
BEX5 MUTATED 2 1 2
BEX5 WILD-TYPE 85 79 98
'BEX5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.542 (Fisher's exact test), Q value = 0.86

Table S20400.  Gene #1940: 'BEX5 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
BEX5 MUTATED 1 1 3
BEX5 WILD-TYPE 88 159 135
'BEX5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.505 (Fisher's exact test), Q value = 0.83

Table S20401.  Gene #1940: 'BEX5 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
BEX5 MUTATED 4 1 0
BEX5 WILD-TYPE 178 132 72
'BEX5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.221 (Fisher's exact test), Q value = 0.54

Table S20402.  Gene #1940: 'BEX5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
BEX5 MUTATED 1 2 3 1
BEX5 WILD-TYPE 111 94 89 185
'BEX5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.157 (Fisher's exact test), Q value = 0.45

Table S20403.  Gene #1940: 'BEX5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
BEX5 MUTATED 0 2 1 0 2 0 2
BEX5 WILD-TYPE 60 48 48 40 61 125 97
'BEX5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.48 (Fisher's exact test), Q value = 0.81

Table S20404.  Gene #1940: 'BEX5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
BEX5 MUTATED 3 2 0 2
BEX5 WILD-TYPE 127 76 68 194
'BEX5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.372 (Fisher's exact test), Q value = 0.7

Table S20405.  Gene #1940: 'BEX5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
BEX5 MUTATED 2 1 1 1 2 0 0 0 0
BEX5 WILD-TYPE 38 61 27 79 67 48 43 28 74
'AGBL5 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00819 (Fisher's exact test), Q value = 0.084

Table S20406.  Gene #1941: 'AGBL5 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
AGBL5 MUTATED 0 0 0 3
AGBL5 WILD-TYPE 46 58 64 40

Figure S4983.  Get High-res Image Gene #1941: 'AGBL5 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'AGBL5 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.184 (Fisher's exact test), Q value = 0.48

Table S20407.  Gene #1941: 'AGBL5 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
AGBL5 MUTATED 2 0 1
AGBL5 WILD-TYPE 49 83 76
'AGBL5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00075 (Fisher's exact test), Q value = 0.02

Table S20408.  Gene #1941: 'AGBL5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
AGBL5 MUTATED 12 1 0 0
AGBL5 WILD-TYPE 166 182 101 20

Figure S4984.  Get High-res Image Gene #1941: 'AGBL5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'AGBL5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.12 (Fisher's exact test), Q value = 0.39

Table S20409.  Gene #1941: 'AGBL5 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
AGBL5 MUTATED 2 1 7
AGBL5 WILD-TYPE 85 79 93
'AGBL5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.39 (Fisher's exact test), Q value = 0.72

Table S20410.  Gene #1941: 'AGBL5 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
AGBL5 MUTATED 1 4 6
AGBL5 WILD-TYPE 88 156 132
'AGBL5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.311 (Fisher's exact test), Q value = 0.64

Table S20411.  Gene #1941: 'AGBL5 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
AGBL5 MUTATED 8 2 1
AGBL5 WILD-TYPE 174 131 71
'AGBL5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0864 (Fisher's exact test), Q value = 0.32

Table S20412.  Gene #1941: 'AGBL5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
AGBL5 MUTATED 1 6 3 3
AGBL5 WILD-TYPE 111 90 89 183
'AGBL5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 3e-05 (Fisher's exact test), Q value = 0.0022

Table S20413.  Gene #1941: 'AGBL5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
AGBL5 MUTATED 1 0 8 0 0 0 4
AGBL5 WILD-TYPE 59 50 41 40 63 125 95

Figure S4985.  Get High-res Image Gene #1941: 'AGBL5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'AGBL5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.756 (Fisher's exact test), Q value = 1

Table S20414.  Gene #1941: 'AGBL5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
AGBL5 MUTATED 5 2 1 4
AGBL5 WILD-TYPE 125 76 67 192
'AGBL5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0135 (Fisher's exact test), Q value = 0.11

Table S20415.  Gene #1941: 'AGBL5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
AGBL5 MUTATED 1 3 1 0 6 0 1 0 0
AGBL5 WILD-TYPE 39 59 27 80 63 48 42 28 74

Figure S4986.  Get High-res Image Gene #1941: 'AGBL5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'AGBL5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0243 (Fisher's exact test), Q value = 0.16

Table S20416.  Gene #1941: 'AGBL5 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
AGBL5 MUTATED 1 0 0 3
AGBL5 WILD-TYPE 32 31 27 16

Figure S4987.  Get High-res Image Gene #1941: 'AGBL5 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'AGBL5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.673 (Fisher's exact test), Q value = 0.95

Table S20417.  Gene #1941: 'AGBL5 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
AGBL5 MUTATED 2 0 2 0
AGBL5 WILD-TYPE 52 10 22 22
'LDLR MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00405 (Fisher's exact test), Q value = 0.058

Table S20418.  Gene #1942: 'LDLR MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
LDLR MUTATED 1 0 0 4
LDLR WILD-TYPE 45 58 64 39

Figure S4988.  Get High-res Image Gene #1942: 'LDLR MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'LDLR MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00637 (Fisher's exact test), Q value = 0.073

Table S20419.  Gene #1942: 'LDLR MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
LDLR MUTATED 4 0 1
LDLR WILD-TYPE 47 83 76

Figure S4989.  Get High-res Image Gene #1942: 'LDLR MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'LDLR MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0513 (Fisher's exact test), Q value = 0.24

Table S20420.  Gene #1942: 'LDLR MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
LDLR MUTATED 9 3 0 0
LDLR WILD-TYPE 169 180 101 20
'LDLR MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.503 (Fisher's exact test), Q value = 0.83

Table S20421.  Gene #1942: 'LDLR MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
LDLR MUTATED 1 2 4
LDLR WILD-TYPE 86 78 96
'LDLR MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.92 (Fisher's exact test), Q value = 1

Table S20422.  Gene #1942: 'LDLR MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
LDLR MUTATED 2 5 3
LDLR WILD-TYPE 87 155 135
'LDLR MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.133 (Fisher's exact test), Q value = 0.41

Table S20423.  Gene #1942: 'LDLR MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
LDLR MUTATED 2 6 2
LDLR WILD-TYPE 180 127 70
'LDLR MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.839 (Fisher's exact test), Q value = 1

Table S20424.  Gene #1942: 'LDLR MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
LDLR MUTATED 3 3 1 5
LDLR WILD-TYPE 109 93 91 181
'LDLR MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.112 (Fisher's exact test), Q value = 0.37

Table S20425.  Gene #1942: 'LDLR MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
LDLR MUTATED 3 1 2 0 2 0 4
LDLR WILD-TYPE 57 49 47 40 61 125 95
'LDLR MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.635 (Fisher's exact test), Q value = 0.93

Table S20426.  Gene #1942: 'LDLR MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
LDLR MUTATED 4 2 0 5
LDLR WILD-TYPE 126 76 68 191
'LDLR MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.131 (Fisher's exact test), Q value = 0.4

Table S20427.  Gene #1942: 'LDLR MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
LDLR MUTATED 2 2 0 1 5 1 0 0 0
LDLR WILD-TYPE 38 60 28 79 64 47 43 28 74
'NUF2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00177 (Fisher's exact test), Q value = 0.035

Table S20428.  Gene #1943: 'NUF2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
NUF2 MUTATED 0 0 0 4
NUF2 WILD-TYPE 46 58 64 39

Figure S4990.  Get High-res Image Gene #1943: 'NUF2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'NUF2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.554 (Fisher's exact test), Q value = 0.87

Table S20429.  Gene #1943: 'NUF2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
NUF2 MUTATED 2 1 1
NUF2 WILD-TYPE 49 82 76
'NUF2 MUTATION STATUS' versus 'CN_CNMF'

P value = 9e-05 (Fisher's exact test), Q value = 0.0048

Table S20430.  Gene #1943: 'NUF2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
NUF2 MUTATED 14 1 0 1
NUF2 WILD-TYPE 164 182 101 19

Figure S4991.  Get High-res Image Gene #1943: 'NUF2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'NUF2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.236 (Fisher's exact test), Q value = 0.56

Table S20431.  Gene #1943: 'NUF2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
NUF2 MUTATED 5 1 6
NUF2 WILD-TYPE 82 79 94
'NUF2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.607 (Fisher's exact test), Q value = 0.91

Table S20432.  Gene #1943: 'NUF2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
NUF2 MUTATED 2 5 7
NUF2 WILD-TYPE 87 155 131
'NUF2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.454 (Fisher's exact test), Q value = 0.78

Table S20433.  Gene #1943: 'NUF2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
NUF2 MUTATED 9 3 2
NUF2 WILD-TYPE 173 130 70
'NUF2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0518 (Fisher's exact test), Q value = 0.25

Table S20434.  Gene #1943: 'NUF2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
NUF2 MUTATED 1 7 4 4
NUF2 WILD-TYPE 111 89 88 182
'NUF2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0042 (Fisher's exact test), Q value = 0.059

Table S20435.  Gene #1943: 'NUF2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
NUF2 MUTATED 2 2 6 2 1 0 3
NUF2 WILD-TYPE 58 48 43 38 62 125 96

Figure S4992.  Get High-res Image Gene #1943: 'NUF2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'NUF2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.211 (Fisher's exact test), Q value = 0.52

Table S20436.  Gene #1943: 'NUF2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
NUF2 MUTATED 8 2 1 4
NUF2 WILD-TYPE 122 76 67 192
'NUF2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0104 (Fisher's exact test), Q value = 0.098

Table S20437.  Gene #1943: 'NUF2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
NUF2 MUTATED 3 4 1 0 5 0 2 0 0
NUF2 WILD-TYPE 37 58 27 80 64 48 41 28 74

Figure S4993.  Get High-res Image Gene #1943: 'NUF2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'NUF2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0137 (Fisher's exact test), Q value = 0.12

Table S20438.  Gene #1943: 'NUF2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
NUF2 MUTATED 0 1 0 3
NUF2 WILD-TYPE 33 30 27 16

Figure S4994.  Get High-res Image Gene #1943: 'NUF2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'NUF2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.672 (Fisher's exact test), Q value = 0.95

Table S20439.  Gene #1943: 'NUF2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
NUF2 MUTATED 2 0 2 0
NUF2 WILD-TYPE 52 10 22 22
'ZNF521 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.104 (Fisher's exact test), Q value = 0.36

Table S20440.  Gene #1944: 'ZNF521 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ZNF521 MUTATED 5 2 1 4
ZNF521 WILD-TYPE 41 56 63 39
'ZNF521 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.387 (Fisher's exact test), Q value = 0.71

Table S20441.  Gene #1944: 'ZNF521 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ZNF521 MUTATED 5 4 3
ZNF521 WILD-TYPE 46 79 74
'ZNF521 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00841 (Fisher's exact test), Q value = 0.085

Table S20442.  Gene #1944: 'ZNF521 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ZNF521 MUTATED 22 7 5 0
ZNF521 WILD-TYPE 156 176 96 20

Figure S4995.  Get High-res Image Gene #1944: 'ZNF521 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ZNF521 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0209 (Fisher's exact test), Q value = 0.15

Table S20443.  Gene #1944: 'ZNF521 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ZNF521 MUTATED 13 5 4
ZNF521 WILD-TYPE 74 75 96

Figure S4996.  Get High-res Image Gene #1944: 'ZNF521 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'ZNF521 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.37 (Fisher's exact test), Q value = 0.7

Table S20444.  Gene #1944: 'ZNF521 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ZNF521 MUTATED 4 10 13
ZNF521 WILD-TYPE 85 150 125
'ZNF521 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.4 (Fisher's exact test), Q value = 0.73

Table S20445.  Gene #1944: 'ZNF521 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ZNF521 MUTATED 16 8 3
ZNF521 WILD-TYPE 166 125 69
'ZNF521 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0908 (Fisher's exact test), Q value = 0.33

Table S20446.  Gene #1944: 'ZNF521 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ZNF521 MUTATED 5 7 12 10
ZNF521 WILD-TYPE 107 89 80 176
'ZNF521 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0305 (Fisher's exact test), Q value = 0.18

Table S20447.  Gene #1944: 'ZNF521 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ZNF521 MUTATED 5 1 9 1 6 5 7
ZNF521 WILD-TYPE 55 49 40 39 57 120 92

Figure S4997.  Get High-res Image Gene #1944: 'ZNF521 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ZNF521 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0359 (Fisher's exact test), Q value = 0.2

Table S20448.  Gene #1944: 'ZNF521 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ZNF521 MUTATED 6 12 3 13
ZNF521 WILD-TYPE 124 66 65 183

Figure S4998.  Get High-res Image Gene #1944: 'ZNF521 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'ZNF521 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0249 (Fisher's exact test), Q value = 0.16

Table S20449.  Gene #1944: 'ZNF521 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ZNF521 MUTATED 1 11 2 3 9 3 1 1 3
ZNF521 WILD-TYPE 39 51 26 77 60 45 42 27 71

Figure S4999.  Get High-res Image Gene #1944: 'ZNF521 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'ZNF521 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.602 (Fisher's exact test), Q value = 0.9

Table S20450.  Gene #1944: 'ZNF521 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
ZNF521 MUTATED 2 4 2 3
ZNF521 WILD-TYPE 31 27 25 16
'ZNF521 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.268 (Fisher's exact test), Q value = 0.59

Table S20451.  Gene #1944: 'ZNF521 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
ZNF521 MUTATED 8 1 2 0
ZNF521 WILD-TYPE 46 9 22 22
'OR4N2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.152 (Fisher's exact test), Q value = 0.44

Table S20452.  Gene #1945: 'OR4N2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
OR4N2 MUTATED 7 1 2 0
OR4N2 WILD-TYPE 171 182 99 20
'OR4N2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.397 (Fisher's exact test), Q value = 0.72

Table S20453.  Gene #1945: 'OR4N2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
OR4N2 MUTATED 2 1 5
OR4N2 WILD-TYPE 85 79 95
'OR4N2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.817 (Fisher's exact test), Q value = 1

Table S20454.  Gene #1945: 'OR4N2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
OR4N2 MUTATED 2 4 2
OR4N2 WILD-TYPE 87 156 136
'OR4N2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.419 (Fisher's exact test), Q value = 0.75

Table S20455.  Gene #1945: 'OR4N2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
OR4N2 MUTATED 2 4 2
OR4N2 WILD-TYPE 180 129 70
'OR4N2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0304 (Fisher's exact test), Q value = 0.18

Table S20456.  Gene #1945: 'OR4N2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
OR4N2 MUTATED 1 6 1 2
OR4N2 WILD-TYPE 111 90 91 184

Figure S5000.  Get High-res Image Gene #1945: 'OR4N2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'OR4N2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0487 (Fisher's exact test), Q value = 0.24

Table S20457.  Gene #1945: 'OR4N2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
OR4N2 MUTATED 1 2 4 1 0 1 1
OR4N2 WILD-TYPE 59 48 45 39 63 124 98

Figure S5001.  Get High-res Image Gene #1945: 'OR4N2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'OR4N2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.333 (Fisher's exact test), Q value = 0.66

Table S20458.  Gene #1945: 'OR4N2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
OR4N2 MUTATED 5 0 1 4
OR4N2 WILD-TYPE 125 78 67 192
'OR4N2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0535 (Fisher's exact test), Q value = 0.25

Table S20459.  Gene #1945: 'OR4N2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
OR4N2 MUTATED 1 0 0 0 5 0 2 0 2
OR4N2 WILD-TYPE 39 62 28 80 64 48 41 28 72
'CELSR1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.867 (Fisher's exact test), Q value = 1

Table S20460.  Gene #1946: 'CELSR1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
CELSR1 MUTATED 2 1 1 1
CELSR1 WILD-TYPE 44 57 63 42
'CELSR1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0447 (Fisher's exact test), Q value = 0.22

Table S20461.  Gene #1946: 'CELSR1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
CELSR1 MUTATED 3 0 2
CELSR1 WILD-TYPE 48 83 75

Figure S5002.  Get High-res Image Gene #1946: 'CELSR1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'CELSR1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00366 (Fisher's exact test), Q value = 0.055

Table S20462.  Gene #1946: 'CELSR1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
CELSR1 MUTATED 17 3 3 0
CELSR1 WILD-TYPE 161 180 98 20

Figure S5003.  Get High-res Image Gene #1946: 'CELSR1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'CELSR1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0656 (Fisher's exact test), Q value = 0.28

Table S20463.  Gene #1946: 'CELSR1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
CELSR1 MUTATED 4 2 11
CELSR1 WILD-TYPE 83 78 89
'CELSR1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.293 (Fisher's exact test), Q value = 0.62

Table S20464.  Gene #1946: 'CELSR1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
CELSR1 MUTATED 3 6 10
CELSR1 WILD-TYPE 86 154 128
'CELSR1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.708 (Fisher's exact test), Q value = 0.98

Table S20465.  Gene #1946: 'CELSR1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
CELSR1 MUTATED 11 5 3
CELSR1 WILD-TYPE 171 128 69
'CELSR1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0728 (Fisher's exact test), Q value = 0.29

Table S20466.  Gene #1946: 'CELSR1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
CELSR1 MUTATED 2 9 5 7
CELSR1 WILD-TYPE 110 87 87 179
'CELSR1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S20467.  Gene #1946: 'CELSR1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
CELSR1 MUTATED 2 1 12 1 0 3 4
CELSR1 WILD-TYPE 58 49 37 39 63 122 95

Figure S5004.  Get High-res Image Gene #1946: 'CELSR1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CELSR1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.298 (Fisher's exact test), Q value = 0.63

Table S20468.  Gene #1946: 'CELSR1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
CELSR1 MUTATED 10 2 3 7
CELSR1 WILD-TYPE 120 76 65 189
'CELSR1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0382 (Fisher's exact test), Q value = 0.2

Table S20469.  Gene #1946: 'CELSR1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
CELSR1 MUTATED 1 6 0 0 6 2 4 1 2
CELSR1 WILD-TYPE 39 56 28 80 63 46 39 27 72

Figure S5005.  Get High-res Image Gene #1946: 'CELSR1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'CELSR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00401 (Fisher's exact test), Q value = 0.058

Table S20470.  Gene #1946: 'CELSR1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
CELSR1 MUTATED 1 0 2 5
CELSR1 WILD-TYPE 32 31 25 14

Figure S5006.  Get High-res Image Gene #1946: 'CELSR1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'CELSR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.293 (Fisher's exact test), Q value = 0.62

Table S20471.  Gene #1946: 'CELSR1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
CELSR1 MUTATED 3 0 4 1
CELSR1 WILD-TYPE 51 10 20 21
'SDAD1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0624 (Fisher's exact test), Q value = 0.27

Table S20472.  Gene #1947: 'SDAD1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
SDAD1 MUTATED 7 1 0 0
SDAD1 WILD-TYPE 171 182 101 20
'SDAD1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0699 (Fisher's exact test), Q value = 0.28

Table S20473.  Gene #1947: 'SDAD1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
SDAD1 MUTATED 5 0 2
SDAD1 WILD-TYPE 82 80 98
'SDAD1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.616 (Fisher's exact test), Q value = 0.91

Table S20474.  Gene #1947: 'SDAD1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
SDAD1 MUTATED 1 2 4
SDAD1 WILD-TYPE 88 158 134
'SDAD1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.775 (Fisher's exact test), Q value = 1

Table S20475.  Gene #1947: 'SDAD1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
SDAD1 MUTATED 3 2 2
SDAD1 WILD-TYPE 179 131 70
'SDAD1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.101 (Fisher's exact test), Q value = 0.35

Table S20476.  Gene #1947: 'SDAD1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
SDAD1 MUTATED 1 4 2 1
SDAD1 WILD-TYPE 111 92 90 185
'SDAD1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0239 (Fisher's exact test), Q value = 0.16

Table S20477.  Gene #1947: 'SDAD1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
SDAD1 MUTATED 0 2 3 0 2 0 1
SDAD1 WILD-TYPE 60 48 46 40 61 125 98

Figure S5007.  Get High-res Image Gene #1947: 'SDAD1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'SDAD1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0415 (Fisher's exact test), Q value = 0.21

Table S20478.  Gene #1947: 'SDAD1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
SDAD1 MUTATED 2 4 0 1
SDAD1 WILD-TYPE 128 74 68 195

Figure S5008.  Get High-res Image Gene #1947: 'SDAD1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'SDAD1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.499 (Fisher's exact test), Q value = 0.83

Table S20479.  Gene #1947: 'SDAD1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
SDAD1 MUTATED 2 2 0 0 1 1 0 0 1
SDAD1 WILD-TYPE 38 60 28 80 68 47 43 28 73
'SDAD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.872 (Fisher's exact test), Q value = 1

Table S20480.  Gene #1947: 'SDAD1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
SDAD1 MUTATED 1 1 0 1
SDAD1 WILD-TYPE 32 30 27 18
'SDAD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.842 (Fisher's exact test), Q value = 1

Table S20481.  Gene #1947: 'SDAD1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
SDAD1 MUTATED 2 0 0 1
SDAD1 WILD-TYPE 52 10 24 21
'GTDC1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.307 (Fisher's exact test), Q value = 0.64

Table S20482.  Gene #1948: 'GTDC1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
GTDC1 MUTATED 1 1 0 2
GTDC1 WILD-TYPE 45 57 64 41
'GTDC1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0626 (Fisher's exact test), Q value = 0.27

Table S20483.  Gene #1948: 'GTDC1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
GTDC1 MUTATED 3 1 0
GTDC1 WILD-TYPE 48 82 77
'GTDC1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0573 (Fisher's exact test), Q value = 0.26

Table S20484.  Gene #1948: 'GTDC1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
GTDC1 MUTATED 8 2 0 0
GTDC1 WILD-TYPE 170 181 101 20
'GTDC1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.679 (Fisher's exact test), Q value = 0.96

Table S20485.  Gene #1948: 'GTDC1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
GTDC1 MUTATED 3 1 2
GTDC1 WILD-TYPE 84 79 98
'GTDC1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.194 (Fisher's exact test), Q value = 0.5

Table S20486.  Gene #1948: 'GTDC1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
GTDC1 MUTATED 1 2 6
GTDC1 WILD-TYPE 88 158 132
'GTDC1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.167 (Fisher's exact test), Q value = 0.46

Table S20487.  Gene #1948: 'GTDC1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
GTDC1 MUTATED 7 2 0
GTDC1 WILD-TYPE 175 131 72
'GTDC1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.388 (Fisher's exact test), Q value = 0.72

Table S20488.  Gene #1948: 'GTDC1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
GTDC1 MUTATED 1 1 4 4
GTDC1 WILD-TYPE 111 95 88 182
'GTDC1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.103 (Fisher's exact test), Q value = 0.36

Table S20489.  Gene #1948: 'GTDC1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
GTDC1 MUTATED 1 0 4 0 1 1 3
GTDC1 WILD-TYPE 59 50 45 40 62 124 96
'GTDC1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.963 (Fisher's exact test), Q value = 1

Table S20490.  Gene #1948: 'GTDC1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
GTDC1 MUTATED 2 2 1 4
GTDC1 WILD-TYPE 128 76 67 192
'GTDC1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.172 (Fisher's exact test), Q value = 0.47

Table S20491.  Gene #1948: 'GTDC1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
GTDC1 MUTATED 0 3 0 0 4 1 0 0 1
GTDC1 WILD-TYPE 40 59 28 80 65 47 43 28 73
'PLCG1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.154 (Fisher's exact test), Q value = 0.44

Table S20492.  Gene #1949: 'PLCG1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
PLCG1 MUTATED 0 1 0 2
PLCG1 WILD-TYPE 46 57 64 41
'PLCG1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.184 (Fisher's exact test), Q value = 0.48

Table S20493.  Gene #1949: 'PLCG1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
PLCG1 MUTATED 2 0 1
PLCG1 WILD-TYPE 49 83 76
'PLCG1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.243 (Fisher's exact test), Q value = 0.57

Table S20494.  Gene #1949: 'PLCG1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
PLCG1 MUTATED 11 4 4 0
PLCG1 WILD-TYPE 167 179 97 20
'PLCG1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.945 (Fisher's exact test), Q value = 1

Table S20495.  Gene #1949: 'PLCG1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
PLCG1 MUTATED 5 5 5
PLCG1 WILD-TYPE 82 75 95
'PLCG1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0725 (Fisher's exact test), Q value = 0.29

Table S20496.  Gene #1949: 'PLCG1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
PLCG1 MUTATED 4 3 10
PLCG1 WILD-TYPE 85 157 128
'PLCG1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.641 (Fisher's exact test), Q value = 0.93

Table S20497.  Gene #1949: 'PLCG1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
PLCG1 MUTATED 10 4 3
PLCG1 WILD-TYPE 172 129 69
'PLCG1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.2 (Fisher's exact test), Q value = 0.51

Table S20498.  Gene #1949: 'PLCG1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
PLCG1 MUTATED 4 7 4 4
PLCG1 WILD-TYPE 108 89 88 182
'PLCG1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00258 (Fisher's exact test), Q value = 0.044

Table S20499.  Gene #1949: 'PLCG1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
PLCG1 MUTATED 2 1 8 1 3 1 3
PLCG1 WILD-TYPE 58 49 41 39 60 124 96

Figure S5009.  Get High-res Image Gene #1949: 'PLCG1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'PLCG1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.176 (Fisher's exact test), Q value = 0.48

Table S20500.  Gene #1949: 'PLCG1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
PLCG1 MUTATED 6 6 1 5
PLCG1 WILD-TYPE 124 72 67 191
'PLCG1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00825 (Fisher's exact test), Q value = 0.085

Table S20501.  Gene #1949: 'PLCG1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
PLCG1 MUTATED 1 6 0 0 7 2 0 0 2
PLCG1 WILD-TYPE 39 56 28 80 62 46 43 28 72

Figure S5010.  Get High-res Image Gene #1949: 'PLCG1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'PLCG1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.933 (Fisher's exact test), Q value = 1

Table S20502.  Gene #1949: 'PLCG1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
PLCG1 MUTATED 1 2 1 1
PLCG1 WILD-TYPE 32 29 26 18
'PLCG1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.692 (Fisher's exact test), Q value = 0.97

Table S20503.  Gene #1949: 'PLCG1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
PLCG1 MUTATED 2 1 1 1
PLCG1 WILD-TYPE 52 9 23 21
'SMC4 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0491 (Fisher's exact test), Q value = 0.24

Table S20504.  Gene #1950: 'SMC4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
SMC4 MUTATED 5 1 1 4
SMC4 WILD-TYPE 41 57 63 39

Figure S5011.  Get High-res Image Gene #1950: 'SMC4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'SMC4 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0771 (Fisher's exact test), Q value = 0.3

Table S20505.  Gene #1950: 'SMC4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
SMC4 MUTATED 6 3 2
SMC4 WILD-TYPE 45 80 75
'SMC4 MUTATION STATUS' versus 'CN_CNMF'

P value = 3e-05 (Fisher's exact test), Q value = 0.0022

Table S20506.  Gene #1950: 'SMC4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
SMC4 MUTATED 17 2 0 0
SMC4 WILD-TYPE 161 181 101 20

Figure S5012.  Get High-res Image Gene #1950: 'SMC4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'SMC4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.602 (Fisher's exact test), Q value = 0.91

Table S20507.  Gene #1950: 'SMC4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
SMC4 MUTATED 3 1 4
SMC4 WILD-TYPE 84 79 96
'SMC4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.506 (Fisher's exact test), Q value = 0.83

Table S20508.  Gene #1950: 'SMC4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
SMC4 MUTATED 2 4 7
SMC4 WILD-TYPE 87 156 131
'SMC4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.569 (Fisher's exact test), Q value = 0.88

Table S20509.  Gene #1950: 'SMC4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
SMC4 MUTATED 6 6 1
SMC4 WILD-TYPE 176 127 71
'SMC4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0219 (Fisher's exact test), Q value = 0.15

Table S20510.  Gene #1950: 'SMC4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
SMC4 MUTATED 1 5 1 13
SMC4 WILD-TYPE 111 91 91 173

Figure S5013.  Get High-res Image Gene #1950: 'SMC4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'SMC4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0307 (Fisher's exact test), Q value = 0.18

Table S20511.  Gene #1950: 'SMC4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
SMC4 MUTATED 2 2 4 0 0 3 9
SMC4 WILD-TYPE 58 48 45 40 63 122 90

Figure S5014.  Get High-res Image Gene #1950: 'SMC4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'SMC4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.789 (Fisher's exact test), Q value = 1

Table S20512.  Gene #1950: 'SMC4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
SMC4 MUTATED 4 2 2 10
SMC4 WILD-TYPE 126 76 66 186
'SMC4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.143 (Fisher's exact test), Q value = 0.42

Table S20513.  Gene #1950: 'SMC4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
SMC4 MUTATED 0 1 1 2 7 2 0 2 3
SMC4 WILD-TYPE 40 61 27 78 62 46 43 26 71
'NDUFV2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0361 (Fisher's exact test), Q value = 0.2

Table S20514.  Gene #1951: 'NDUFV2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
NDUFV2 MUTATED 2 0 0 1
NDUFV2 WILD-TYPE 176 183 101 19

Figure S5015.  Get High-res Image Gene #1951: 'NDUFV2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'NDUFV2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S20515.  Gene #1951: 'NDUFV2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
NDUFV2 MUTATED 1 1 1
NDUFV2 WILD-TYPE 86 79 99
'NDUFV2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.318 (Fisher's exact test), Q value = 0.65

Table S20516.  Gene #1951: 'NDUFV2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
NDUFV2 MUTATED 1 1 1 0
NDUFV2 WILD-TYPE 111 95 91 186
'NDUFV2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.031 (Fisher's exact test), Q value = 0.18

Table S20517.  Gene #1951: 'NDUFV2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
NDUFV2 MUTATED 1 0 2 0 0 0 0
NDUFV2 WILD-TYPE 59 50 47 40 63 125 99

Figure S5016.  Get High-res Image Gene #1951: 'NDUFV2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'NDUFV2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.643 (Fisher's exact test), Q value = 0.93

Table S20518.  Gene #1951: 'NDUFV2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
NDUFV2 MUTATED 2 0 0 1
NDUFV2 WILD-TYPE 128 78 68 195
'NDUFV2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.365 (Fisher's exact test), Q value = 0.69

Table S20519.  Gene #1951: 'NDUFV2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
NDUFV2 MUTATED 1 1 0 0 0 1 0 0 0
NDUFV2 WILD-TYPE 39 61 28 80 69 47 43 28 74
'SYT2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0077 (Fisher's exact test), Q value = 0.082

Table S20520.  Gene #1952: 'SYT2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
SYT2 MUTATED 0 0 0 3
SYT2 WILD-TYPE 46 58 64 40

Figure S5017.  Get High-res Image Gene #1952: 'SYT2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'SYT2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S20521.  Gene #1952: 'SYT2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
SYT2 MUTATED 1 1 1
SYT2 WILD-TYPE 50 82 76
'SYT2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.462 (Fisher's exact test), Q value = 0.79

Table S20522.  Gene #1952: 'SYT2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
SYT2 MUTATED 6 2 1 0
SYT2 WILD-TYPE 172 181 100 20
'SYT2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0658 (Fisher's exact test), Q value = 0.28

Table S20523.  Gene #1952: 'SYT2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
SYT2 MUTATED 1 0 5
SYT2 WILD-TYPE 86 80 95
'SYT2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.276 (Fisher's exact test), Q value = 0.6

Table S20524.  Gene #1952: 'SYT2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
SYT2 MUTATED 0 5 3
SYT2 WILD-TYPE 89 155 135
'SYT2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.512 (Fisher's exact test), Q value = 0.83

Table S20525.  Gene #1952: 'SYT2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
SYT2 MUTATED 4 4 0
SYT2 WILD-TYPE 178 129 72
'SYT2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.319 (Fisher's exact test), Q value = 0.65

Table S20526.  Gene #1952: 'SYT2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
SYT2 MUTATED 0 3 2 4
SYT2 WILD-TYPE 112 93 90 182
'SYT2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.171 (Fisher's exact test), Q value = 0.47

Table S20527.  Gene #1952: 'SYT2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
SYT2 MUTATED 1 2 3 0 0 1 2
SYT2 WILD-TYPE 59 48 46 40 63 124 97
'SYT2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.144 (Fisher's exact test), Q value = 0.42

Table S20528.  Gene #1952: 'SYT2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
SYT2 MUTATED 5 0 0 3
SYT2 WILD-TYPE 125 78 68 193
'SYT2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0121 (Fisher's exact test), Q value = 0.11

Table S20529.  Gene #1952: 'SYT2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
SYT2 MUTATED 0 0 3 2 3 0 0 0 0
SYT2 WILD-TYPE 40 62 25 78 66 48 43 28 74

Figure S5018.  Get High-res Image Gene #1952: 'SYT2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'KIT MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0342 (Fisher's exact test), Q value = 0.19

Table S20530.  Gene #1953: 'KIT MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
KIT MUTATED 2 1 0 4
KIT WILD-TYPE 44 57 64 39

Figure S5019.  Get High-res Image Gene #1953: 'KIT MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'KIT MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S20531.  Gene #1953: 'KIT MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
KIT MUTATED 2 3 2
KIT WILD-TYPE 49 80 75
'KIT MUTATION STATUS' versus 'CN_CNMF'

P value = 0.309 (Fisher's exact test), Q value = 0.64

Table S20532.  Gene #1953: 'KIT MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
KIT MUTATED 50 38 20 4
KIT WILD-TYPE 128 145 81 16
'KIT MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.834 (Fisher's exact test), Q value = 1

Table S20533.  Gene #1953: 'KIT MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
KIT MUTATED 33 34 39
KIT WILD-TYPE 54 46 61
'KIT MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0213 (Fisher's exact test), Q value = 0.15

Table S20534.  Gene #1953: 'KIT MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
KIT MUTATED 14 40 44
KIT WILD-TYPE 75 120 94

Figure S5020.  Get High-res Image Gene #1953: 'KIT MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'KIT MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.271 (Fisher's exact test), Q value = 0.6

Table S20535.  Gene #1953: 'KIT MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
KIT MUTATED 53 30 15
KIT WILD-TYPE 129 103 57
'KIT MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S20536.  Gene #1953: 'KIT MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
KIT MUTATED 46 32 28 6
KIT WILD-TYPE 66 64 64 180

Figure S5021.  Get High-res Image Gene #1953: 'KIT MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'KIT MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S20537.  Gene #1953: 'KIT MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
KIT MUTATED 28 20 25 12 20 3 4
KIT WILD-TYPE 32 30 24 28 43 122 95

Figure S5022.  Get High-res Image Gene #1953: 'KIT MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'KIT MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S20538.  Gene #1953: 'KIT MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
KIT MUTATED 65 23 12 11
KIT WILD-TYPE 65 55 56 185

Figure S5023.  Get High-res Image Gene #1953: 'KIT MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'KIT MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S20539.  Gene #1953: 'KIT MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
KIT MUTATED 20 22 9 21 13 10 14 0 2
KIT WILD-TYPE 20 40 19 59 56 38 29 28 72

Figure S5024.  Get High-res Image Gene #1953: 'KIT MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'KIT MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.481 (Fisher's exact test), Q value = 0.81

Table S20540.  Gene #1953: 'KIT MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
KIT MUTATED 9 9 8 9
KIT WILD-TYPE 24 22 19 10
'KIT MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.743 (Fisher's exact test), Q value = 1

Table S20541.  Gene #1953: 'KIT MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
KIT MUTATED 16 2 9 8
KIT WILD-TYPE 38 8 15 14
'ERMP1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.135 (Fisher's exact test), Q value = 0.41

Table S20542.  Gene #1954: 'ERMP1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ERMP1 MUTATED 3 0 1 2
ERMP1 WILD-TYPE 43 58 63 41
'ERMP1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S20543.  Gene #1954: 'ERMP1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ERMP1 MUTATED 1 3 2
ERMP1 WILD-TYPE 50 80 75
'ERMP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0288 (Fisher's exact test), Q value = 0.17

Table S20544.  Gene #1954: 'ERMP1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ERMP1 MUTATED 9 2 0 0
ERMP1 WILD-TYPE 169 181 101 20

Figure S5025.  Get High-res Image Gene #1954: 'ERMP1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ERMP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0757 (Fisher's exact test), Q value = 0.3

Table S20545.  Gene #1954: 'ERMP1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ERMP1 MUTATED 4 0 1
ERMP1 WILD-TYPE 83 80 99
'ERMP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.513 (Fisher's exact test), Q value = 0.83

Table S20546.  Gene #1954: 'ERMP1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ERMP1 MUTATED 1 3 5
ERMP1 WILD-TYPE 88 157 133
'ERMP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.911 (Fisher's exact test), Q value = 1

Table S20547.  Gene #1954: 'ERMP1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ERMP1 MUTATED 4 3 2
ERMP1 WILD-TYPE 178 130 70
'ERMP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.633 (Fisher's exact test), Q value = 0.93

Table S20548.  Gene #1954: 'ERMP1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ERMP1 MUTATED 1 2 3 5
ERMP1 WILD-TYPE 111 94 89 181
'ERMP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.654 (Fisher's exact test), Q value = 0.94

Table S20549.  Gene #1954: 'ERMP1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ERMP1 MUTATED 1 1 3 0 1 2 3
ERMP1 WILD-TYPE 59 49 46 40 62 123 96
'ERMP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.474 (Fisher's exact test), Q value = 0.8

Table S20550.  Gene #1954: 'ERMP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ERMP1 MUTATED 3 1 0 7
ERMP1 WILD-TYPE 127 77 68 189
'ERMP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.641 (Fisher's exact test), Q value = 0.93

Table S20551.  Gene #1954: 'ERMP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ERMP1 MUTATED 0 3 1 2 3 0 0 0 2
ERMP1 WILD-TYPE 40 59 27 78 66 48 43 28 72
'NOV MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S20552.  Gene #1955: 'NOV MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
NOV MUTATED 4 4 2 0
NOV WILD-TYPE 174 179 99 20
'NOV MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.177 (Fisher's exact test), Q value = 0.48

Table S20553.  Gene #1955: 'NOV MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
NOV MUTATED 1 5 2
NOV WILD-TYPE 86 75 98
'NOV MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.172 (Fisher's exact test), Q value = 0.47

Table S20554.  Gene #1955: 'NOV MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
NOV MUTATED 0 6 3
NOV WILD-TYPE 89 154 135
'NOV MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.11 (Fisher's exact test), Q value = 0.37

Table S20555.  Gene #1955: 'NOV MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
NOV MUTATED 3 6 0
NOV WILD-TYPE 179 127 72
'NOV MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0837 (Fisher's exact test), Q value = 0.31

Table S20556.  Gene #1955: 'NOV MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
NOV MUTATED 6 1 1 2
NOV WILD-TYPE 106 95 91 184
'NOV MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0327 (Fisher's exact test), Q value = 0.18

Table S20557.  Gene #1955: 'NOV MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
NOV MUTATED 4 2 1 0 2 0 1
NOV WILD-TYPE 56 48 48 40 61 125 98

Figure S5026.  Get High-res Image Gene #1955: 'NOV MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'NOV MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.43 (Fisher's exact test), Q value = 0.76

Table S20558.  Gene #1955: 'NOV MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
NOV MUTATED 4 2 2 2
NOV WILD-TYPE 126 76 66 194
'NOV MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.163 (Fisher's exact test), Q value = 0.46

Table S20559.  Gene #1955: 'NOV MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
NOV MUTATED 1 1 2 1 1 1 3 0 0
NOV WILD-TYPE 39 61 26 79 68 47 40 28 74
'MYOG MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0928 (Fisher's exact test), Q value = 0.33

Table S20560.  Gene #1956: 'MYOG MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
MYOG MUTATED 5 0 1 0
MYOG WILD-TYPE 173 183 100 20
'MYOG MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.384 (Fisher's exact test), Q value = 0.71

Table S20561.  Gene #1956: 'MYOG MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
MYOG MUTATED 2 0 3
MYOG WILD-TYPE 85 80 97
'MYOG MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.731 (Fisher's exact test), Q value = 1

Table S20562.  Gene #1956: 'MYOG MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
MYOG MUTATED 2 2 1
MYOG WILD-TYPE 87 158 137
'MYOG MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.344 (Fisher's exact test), Q value = 0.67

Table S20563.  Gene #1956: 'MYOG MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
MYOG MUTATED 1 3 1
MYOG WILD-TYPE 181 130 71
'MYOG MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.215 (Fisher's exact test), Q value = 0.52

Table S20564.  Gene #1956: 'MYOG MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
MYOG MUTATED 0 1 3 2
MYOG WILD-TYPE 112 95 89 184
'MYOG MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.196 (Fisher's exact test), Q value = 0.5

Table S20565.  Gene #1956: 'MYOG MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
MYOG MUTATED 1 0 2 1 1 0 1
MYOG WILD-TYPE 59 50 47 39 62 125 98
'MYOG MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.744 (Fisher's exact test), Q value = 1

Table S20566.  Gene #1956: 'MYOG MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
MYOG MUTATED 3 1 0 2
MYOG WILD-TYPE 127 77 68 194
'MYOG MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.987 (Fisher's exact test), Q value = 1

Table S20567.  Gene #1956: 'MYOG MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
MYOG MUTATED 1 1 0 1 1 0 1 0 1
MYOG WILD-TYPE 39 61 28 79 68 48 42 28 73
'NTN4 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.566 (Fisher's exact test), Q value = 0.87

Table S20568.  Gene #1957: 'NTN4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
NTN4 MUTATED 0 1 1 2
NTN4 WILD-TYPE 46 57 63 41
'NTN4 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.676 (Fisher's exact test), Q value = 0.96

Table S20569.  Gene #1957: 'NTN4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
NTN4 MUTATED 0 2 2
NTN4 WILD-TYPE 51 81 75
'NTN4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0379 (Fisher's exact test), Q value = 0.2

Table S20570.  Gene #1957: 'NTN4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
NTN4 MUTATED 7 0 2 0
NTN4 WILD-TYPE 171 183 99 20

Figure S5027.  Get High-res Image Gene #1957: 'NTN4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'NTN4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0369 (Fisher's exact test), Q value = 0.2

Table S20571.  Gene #1957: 'NTN4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
NTN4 MUTATED 0 0 4
NTN4 WILD-TYPE 87 80 96

Figure S5028.  Get High-res Image Gene #1957: 'NTN4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'NTN4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.108 (Fisher's exact test), Q value = 0.36

Table S20572.  Gene #1957: 'NTN4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
NTN4 MUTATED 1 7 1
NTN4 WILD-TYPE 88 153 137
'NTN4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0326 (Fisher's exact test), Q value = 0.18

Table S20573.  Gene #1957: 'NTN4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
NTN4 MUTATED 2 7 0
NTN4 WILD-TYPE 180 126 72

Figure S5029.  Get High-res Image Gene #1957: 'NTN4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'NTN4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.672 (Fisher's exact test), Q value = 0.95

Table S20574.  Gene #1957: 'NTN4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
NTN4 MUTATED 1 3 1 4
NTN4 WILD-TYPE 111 93 91 182
'NTN4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.695 (Fisher's exact test), Q value = 0.97

Table S20575.  Gene #1957: 'NTN4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
NTN4 MUTATED 1 1 2 0 0 2 3
NTN4 WILD-TYPE 59 49 47 40 63 123 96
'NTN4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.392 (Fisher's exact test), Q value = 0.72

Table S20576.  Gene #1957: 'NTN4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
NTN4 MUTATED 3 0 0 5
NTN4 WILD-TYPE 127 78 68 191
'NTN4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0265 (Fisher's exact test), Q value = 0.16

Table S20577.  Gene #1957: 'NTN4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
NTN4 MUTATED 2 0 1 0 4 1 0 0 0
NTN4 WILD-TYPE 38 62 27 80 65 47 43 28 74

Figure S5030.  Get High-res Image Gene #1957: 'NTN4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'XRN1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.158 (Fisher's exact test), Q value = 0.45

Table S20578.  Gene #1958: 'XRN1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
XRN1 MUTATED 4 1 1 3
XRN1 WILD-TYPE 42 57 63 40
'XRN1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.377 (Fisher's exact test), Q value = 0.71

Table S20579.  Gene #1958: 'XRN1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
XRN1 MUTATED 4 3 2
XRN1 WILD-TYPE 47 80 75
'XRN1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0459 (Fisher's exact test), Q value = 0.23

Table S20580.  Gene #1958: 'XRN1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
XRN1 MUTATED 15 4 5 0
XRN1 WILD-TYPE 163 179 96 20

Figure S5031.  Get High-res Image Gene #1958: 'XRN1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'XRN1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.526 (Fisher's exact test), Q value = 0.85

Table S20581.  Gene #1958: 'XRN1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
XRN1 MUTATED 5 3 8
XRN1 WILD-TYPE 82 77 92
'XRN1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.207 (Fisher's exact test), Q value = 0.51

Table S20582.  Gene #1958: 'XRN1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
XRN1 MUTATED 1 9 7
XRN1 WILD-TYPE 88 151 131
'XRN1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.414 (Fisher's exact test), Q value = 0.74

Table S20583.  Gene #1958: 'XRN1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
XRN1 MUTATED 9 7 1
XRN1 WILD-TYPE 173 126 71
'XRN1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.425 (Fisher's exact test), Q value = 0.75

Table S20584.  Gene #1958: 'XRN1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
XRN1 MUTATED 4 8 4 8
XRN1 WILD-TYPE 108 88 88 178
'XRN1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.375 (Fisher's exact test), Q value = 0.71

Table S20585.  Gene #1958: 'XRN1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
XRN1 MUTATED 4 3 5 1 2 3 6
XRN1 WILD-TYPE 56 47 44 39 61 122 93
'XRN1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.518 (Fisher's exact test), Q value = 0.84

Table S20586.  Gene #1958: 'XRN1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
XRN1 MUTATED 9 2 2 10
XRN1 WILD-TYPE 121 76 66 186
'XRN1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.104 (Fisher's exact test), Q value = 0.36

Table S20587.  Gene #1958: 'XRN1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
XRN1 MUTATED 4 2 2 7 5 0 2 0 1
XRN1 WILD-TYPE 36 60 26 73 64 48 41 28 73
'XRN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0579 (Fisher's exact test), Q value = 0.26

Table S20588.  Gene #1958: 'XRN1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
XRN1 MUTATED 0 1 2 3
XRN1 WILD-TYPE 33 30 25 16
'XRN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.362 (Fisher's exact test), Q value = 0.69

Table S20589.  Gene #1958: 'XRN1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
XRN1 MUTATED 2 0 3 1
XRN1 WILD-TYPE 52 10 21 21
'FAM175A MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0081 (Fisher's exact test), Q value = 0.084

Table S20590.  Gene #1959: 'FAM175A MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
FAM175A MUTATED 0 0 0 3
FAM175A WILD-TYPE 46 58 64 40

Figure S5032.  Get High-res Image Gene #1959: 'FAM175A MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'FAM175A MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.254 (Fisher's exact test), Q value = 0.58

Table S20591.  Gene #1959: 'FAM175A MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
FAM175A MUTATED 2 1 0
FAM175A WILD-TYPE 49 82 77
'FAM175A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0606 (Fisher's exact test), Q value = 0.27

Table S20592.  Gene #1959: 'FAM175A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
FAM175A MUTATED 7 1 0 0
FAM175A WILD-TYPE 171 182 101 20
'FAM175A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S20593.  Gene #1959: 'FAM175A MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
FAM175A MUTATED 2 1 2
FAM175A WILD-TYPE 85 79 98
'FAM175A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.275 (Fisher's exact test), Q value = 0.6

Table S20594.  Gene #1959: 'FAM175A MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
FAM175A MUTATED 0 5 3
FAM175A WILD-TYPE 89 155 135
'FAM175A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.641 (Fisher's exact test), Q value = 0.93

Table S20595.  Gene #1959: 'FAM175A MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
FAM175A MUTATED 3 4 1
FAM175A WILD-TYPE 179 129 71
'FAM175A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.674 (Fisher's exact test), Q value = 0.96

Table S20596.  Gene #1959: 'FAM175A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
FAM175A MUTATED 1 3 1 3
FAM175A WILD-TYPE 111 93 91 183
'FAM175A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.114 (Fisher's exact test), Q value = 0.37

Table S20597.  Gene #1959: 'FAM175A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
FAM175A MUTATED 2 1 2 0 0 0 3
FAM175A WILD-TYPE 58 49 47 40 63 125 96
'FAM175A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.15 (Fisher's exact test), Q value = 0.43

Table S20598.  Gene #1959: 'FAM175A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
FAM175A MUTATED 4 0 1 1
FAM175A WILD-TYPE 126 78 67 195
'FAM175A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.332 (Fisher's exact test), Q value = 0.66

Table S20599.  Gene #1959: 'FAM175A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
FAM175A MUTATED 0 0 1 1 1 1 2 0 0
FAM175A WILD-TYPE 40 62 27 79 68 47 41 28 74
'CSF3R MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0371 (Fisher's exact test), Q value = 0.2

Table S20600.  Gene #1960: 'CSF3R MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
CSF3R MUTATED 1 0 1 4
CSF3R WILD-TYPE 45 58 63 39

Figure S5033.  Get High-res Image Gene #1960: 'CSF3R MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'CSF3R MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0222 (Fisher's exact test), Q value = 0.15

Table S20601.  Gene #1960: 'CSF3R MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
CSF3R MUTATED 4 2 0
CSF3R WILD-TYPE 47 81 77

Figure S5034.  Get High-res Image Gene #1960: 'CSF3R MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'CSF3R MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00167 (Fisher's exact test), Q value = 0.034

Table S20602.  Gene #1960: 'CSF3R MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
CSF3R MUTATED 13 1 1 0
CSF3R WILD-TYPE 165 182 100 20

Figure S5035.  Get High-res Image Gene #1960: 'CSF3R MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'CSF3R MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00956 (Fisher's exact test), Q value = 0.093

Table S20603.  Gene #1960: 'CSF3R MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
CSF3R MUTATED 1 0 7
CSF3R WILD-TYPE 86 80 93

Figure S5036.  Get High-res Image Gene #1960: 'CSF3R MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'CSF3R MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.428 (Fisher's exact test), Q value = 0.76

Table S20604.  Gene #1960: 'CSF3R MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
CSF3R MUTATED 5 4 4
CSF3R WILD-TYPE 84 156 134
'CSF3R MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.532 (Fisher's exact test), Q value = 0.85

Table S20605.  Gene #1960: 'CSF3R MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
CSF3R MUTATED 8 4 1
CSF3R WILD-TYPE 174 129 71
'CSF3R MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0642 (Fisher's exact test), Q value = 0.28

Table S20606.  Gene #1960: 'CSF3R MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
CSF3R MUTATED 0 5 4 6
CSF3R WILD-TYPE 112 91 88 180
'CSF3R MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S20607.  Gene #1960: 'CSF3R MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
CSF3R MUTATED 0 0 8 0 0 0 7
CSF3R WILD-TYPE 60 50 41 40 63 125 92

Figure S5037.  Get High-res Image Gene #1960: 'CSF3R MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CSF3R MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0557 (Fisher's exact test), Q value = 0.26

Table S20608.  Gene #1960: 'CSF3R MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
CSF3R MUTATED 7 0 0 7
CSF3R WILD-TYPE 123 78 68 189
'CSF3R MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 4e-05 (Fisher's exact test), Q value = 0.0027

Table S20609.  Gene #1960: 'CSF3R MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
CSF3R MUTATED 0 2 1 0 10 0 0 1 0
CSF3R WILD-TYPE 40 60 27 80 59 48 43 27 74

Figure S5038.  Get High-res Image Gene #1960: 'CSF3R MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'CSF3R MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0045 (Fisher's exact test), Q value = 0.061

Table S20610.  Gene #1960: 'CSF3R MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
CSF3R MUTATED 0 0 0 3
CSF3R WILD-TYPE 33 31 27 16

Figure S5039.  Get High-res Image Gene #1960: 'CSF3R MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'CSF3R MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S20611.  Gene #1960: 'CSF3R MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
CSF3R MUTATED 2 0 1 0
CSF3R WILD-TYPE 52 10 23 22
'RAB22A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.276 (Fisher's exact test), Q value = 0.6

Table S20612.  Gene #1961: 'RAB22A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
RAB22A MUTATED 3 0 0 0
RAB22A WILD-TYPE 175 183 101 20
'RAB22A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.612 (Fisher's exact test), Q value = 0.91

Table S20613.  Gene #1961: 'RAB22A MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
RAB22A MUTATED 0 1 2
RAB22A WILD-TYPE 89 159 136
'RAB22A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S20614.  Gene #1961: 'RAB22A MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
RAB22A MUTATED 2 1 0
RAB22A WILD-TYPE 180 132 72
'RAB22A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.517 (Fisher's exact test), Q value = 0.84

Table S20615.  Gene #1961: 'RAB22A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
RAB22A MUTATED 0 0 1 2
RAB22A WILD-TYPE 112 96 91 184
'RAB22A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.29 (Fisher's exact test), Q value = 0.62

Table S20616.  Gene #1961: 'RAB22A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
RAB22A MUTATED 0 0 1 0 0 0 2
RAB22A WILD-TYPE 60 50 48 40 63 125 97
'RAB22A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.549 (Fisher's exact test), Q value = 0.87

Table S20617.  Gene #1961: 'RAB22A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
RAB22A MUTATED 0 1 0 2
RAB22A WILD-TYPE 130 77 68 194
'RAB22A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.376 (Fisher's exact test), Q value = 0.71

Table S20618.  Gene #1961: 'RAB22A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
RAB22A MUTATED 0 1 1 0 1 0 0 0 0
RAB22A WILD-TYPE 40 61 27 80 68 48 43 28 74
'SAMD4A MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.205 (Fisher's exact test), Q value = 0.51

Table S20619.  Gene #1962: 'SAMD4A MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
SAMD4A MUTATED 0 0 2 2
SAMD4A WILD-TYPE 46 58 62 41
'SAMD4A MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.833 (Fisher's exact test), Q value = 1

Table S20620.  Gene #1962: 'SAMD4A MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
SAMD4A MUTATED 1 1 2
SAMD4A WILD-TYPE 50 82 75
'SAMD4A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0324 (Fisher's exact test), Q value = 0.18

Table S20621.  Gene #1962: 'SAMD4A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
SAMD4A MUTATED 9 1 1 0
SAMD4A WILD-TYPE 169 182 100 20

Figure S5040.  Get High-res Image Gene #1962: 'SAMD4A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'SAMD4A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.326 (Fisher's exact test), Q value = 0.66

Table S20622.  Gene #1962: 'SAMD4A MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
SAMD4A MUTATED 3 0 2
SAMD4A WILD-TYPE 84 80 98
'SAMD4A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.474 (Fisher's exact test), Q value = 0.8

Table S20623.  Gene #1962: 'SAMD4A MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
SAMD4A MUTATED 3 2 3
SAMD4A WILD-TYPE 86 158 135
'SAMD4A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.562 (Fisher's exact test), Q value = 0.87

Table S20624.  Gene #1962: 'SAMD4A MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
SAMD4A MUTATED 5 3 0
SAMD4A WILD-TYPE 177 130 72
'SAMD4A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.161 (Fisher's exact test), Q value = 0.45

Table S20625.  Gene #1962: 'SAMD4A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
SAMD4A MUTATED 0 2 4 5
SAMD4A WILD-TYPE 112 94 88 181
'SAMD4A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.304 (Fisher's exact test), Q value = 0.63

Table S20626.  Gene #1962: 'SAMD4A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
SAMD4A MUTATED 1 1 4 0 1 2 2
SAMD4A WILD-TYPE 59 49 45 40 62 123 97
'SAMD4A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.649 (Fisher's exact test), Q value = 0.94

Table S20627.  Gene #1962: 'SAMD4A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
SAMD4A MUTATED 3 2 0 6
SAMD4A WILD-TYPE 127 76 68 190
'SAMD4A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.143 (Fisher's exact test), Q value = 0.42

Table S20628.  Gene #1962: 'SAMD4A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
SAMD4A MUTATED 0 3 0 1 5 0 0 1 1
SAMD4A WILD-TYPE 40 59 28 79 64 48 43 27 73
'CCDC11 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0629 (Fisher's exact test), Q value = 0.27

Table S20629.  Gene #1963: 'CCDC11 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
CCDC11 MUTATED 1 0 0 2
CCDC11 WILD-TYPE 45 58 64 41
'CCDC11 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.253 (Fisher's exact test), Q value = 0.58

Table S20630.  Gene #1963: 'CCDC11 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
CCDC11 MUTATED 2 1 0
CCDC11 WILD-TYPE 49 82 77
'CCDC11 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.623 (Fisher's exact test), Q value = 0.92

Table S20631.  Gene #1963: 'CCDC11 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
CCDC11 MUTATED 6 3 1 0
CCDC11 WILD-TYPE 172 180 100 20
'CCDC11 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.774 (Fisher's exact test), Q value = 1

Table S20632.  Gene #1963: 'CCDC11 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
CCDC11 MUTATED 1 2 3
CCDC11 WILD-TYPE 86 78 97
'CCDC11 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.279 (Fisher's exact test), Q value = 0.61

Table S20633.  Gene #1963: 'CCDC11 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
CCDC11 MUTATED 0 5 3
CCDC11 WILD-TYPE 89 155 135
'CCDC11 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.636 (Fisher's exact test), Q value = 0.93

Table S20634.  Gene #1963: 'CCDC11 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
CCDC11 MUTATED 3 4 1
CCDC11 WILD-TYPE 179 129 71
'CCDC11 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.969 (Fisher's exact test), Q value = 1

Table S20635.  Gene #1963: 'CCDC11 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
CCDC11 MUTATED 3 2 1 4
CCDC11 WILD-TYPE 109 94 91 182
'CCDC11 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0075 (Fisher's exact test), Q value = 0.081

Table S20636.  Gene #1963: 'CCDC11 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
CCDC11 MUTATED 0 1 1 3 0 0 5
CCDC11 WILD-TYPE 60 49 48 37 63 125 94

Figure S5041.  Get High-res Image Gene #1963: 'CCDC11 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CCDC11 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.208 (Fisher's exact test), Q value = 0.52

Table S20637.  Gene #1963: 'CCDC11 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
CCDC11 MUTATED 5 0 0 4
CCDC11 WILD-TYPE 125 78 68 192
'CCDC11 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.815 (Fisher's exact test), Q value = 1

Table S20638.  Gene #1963: 'CCDC11 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
CCDC11 MUTATED 2 1 1 1 2 1 0 0 1
CCDC11 WILD-TYPE 38 61 27 79 67 47 43 28 73
'TRPM2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00945 (Fisher's exact test), Q value = 0.092

Table S20639.  Gene #1964: 'TRPM2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
TRPM2 MUTATED 3 1 0 5
TRPM2 WILD-TYPE 43 57 64 38

Figure S5042.  Get High-res Image Gene #1964: 'TRPM2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'TRPM2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.017 (Fisher's exact test), Q value = 0.13

Table S20640.  Gene #1964: 'TRPM2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
TRPM2 MUTATED 6 2 1
TRPM2 WILD-TYPE 45 81 76

Figure S5043.  Get High-res Image Gene #1964: 'TRPM2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'TRPM2 MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S20641.  Gene #1964: 'TRPM2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
TRPM2 MUTATED 23 1 2 0
TRPM2 WILD-TYPE 155 182 99 20

Figure S5044.  Get High-res Image Gene #1964: 'TRPM2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'TRPM2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00936 (Fisher's exact test), Q value = 0.091

Table S20642.  Gene #1964: 'TRPM2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
TRPM2 MUTATED 7 0 9
TRPM2 WILD-TYPE 80 80 91

Figure S5045.  Get High-res Image Gene #1964: 'TRPM2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'TRPM2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.464 (Fisher's exact test), Q value = 0.79

Table S20643.  Gene #1964: 'TRPM2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
TRPM2 MUTATED 3 8 10
TRPM2 WILD-TYPE 86 152 128
'TRPM2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.25 (Fisher's exact test), Q value = 0.58

Table S20644.  Gene #1964: 'TRPM2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
TRPM2 MUTATED 11 9 1
TRPM2 WILD-TYPE 171 124 71
'TRPM2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00342 (Fisher's exact test), Q value = 0.053

Table S20645.  Gene #1964: 'TRPM2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
TRPM2 MUTATED 0 8 8 10
TRPM2 WILD-TYPE 112 88 84 176

Figure S5046.  Get High-res Image Gene #1964: 'TRPM2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'TRPM2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 3e-05 (Fisher's exact test), Q value = 0.0022

Table S20646.  Gene #1964: 'TRPM2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
TRPM2 MUTATED 1 3 11 1 1 1 8
TRPM2 WILD-TYPE 59 47 38 39 62 124 91

Figure S5047.  Get High-res Image Gene #1964: 'TRPM2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'TRPM2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.498 (Fisher's exact test), Q value = 0.82

Table S20647.  Gene #1964: 'TRPM2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
TRPM2 MUTATED 8 4 1 12
TRPM2 WILD-TYPE 122 74 67 184
'TRPM2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00049 (Fisher's exact test), Q value = 0.015

Table S20648.  Gene #1964: 'TRPM2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
TRPM2 MUTATED 2 5 2 1 12 0 0 1 2
TRPM2 WILD-TYPE 38 57 26 79 57 48 43 27 72

Figure S5048.  Get High-res Image Gene #1964: 'TRPM2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'TRPM2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00368 (Fisher's exact test), Q value = 0.055

Table S20649.  Gene #1964: 'TRPM2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
TRPM2 MUTATED 1 0 0 4
TRPM2 WILD-TYPE 32 31 27 15

Figure S5049.  Get High-res Image Gene #1964: 'TRPM2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'TRPM2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.574 (Fisher's exact test), Q value = 0.88

Table S20650.  Gene #1964: 'TRPM2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
TRPM2 MUTATED 3 0 2 0
TRPM2 WILD-TYPE 51 10 22 22
'TRIP12 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00016 (Fisher's exact test), Q value = 0.0072

Table S20651.  Gene #1965: 'TRIP12 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
TRIP12 MUTATED 7 0 0 4
TRIP12 WILD-TYPE 39 58 64 39

Figure S5050.  Get High-res Image Gene #1965: 'TRIP12 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'TRIP12 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0167 (Fisher's exact test), Q value = 0.13

Table S20652.  Gene #1965: 'TRIP12 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
TRIP12 MUTATED 7 2 2
TRIP12 WILD-TYPE 44 81 75

Figure S5051.  Get High-res Image Gene #1965: 'TRIP12 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'TRIP12 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00013 (Fisher's exact test), Q value = 0.0063

Table S20653.  Gene #1965: 'TRIP12 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
TRIP12 MUTATED 23 5 2 0
TRIP12 WILD-TYPE 155 178 99 20

Figure S5052.  Get High-res Image Gene #1965: 'TRIP12 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'TRIP12 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00268 (Fisher's exact test), Q value = 0.045

Table S20654.  Gene #1965: 'TRIP12 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
TRIP12 MUTATED 8 0 11
TRIP12 WILD-TYPE 79 80 89

Figure S5053.  Get High-res Image Gene #1965: 'TRIP12 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'TRIP12 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.189 (Fisher's exact test), Q value = 0.49

Table S20655.  Gene #1965: 'TRIP12 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
TRIP12 MUTATED 3 7 12
TRIP12 WILD-TYPE 86 153 126
'TRIP12 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.418 (Fisher's exact test), Q value = 0.75

Table S20656.  Gene #1965: 'TRIP12 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
TRIP12 MUTATED 13 7 2
TRIP12 WILD-TYPE 169 126 70
'TRIP12 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.154 (Fisher's exact test), Q value = 0.44

Table S20657.  Gene #1965: 'TRIP12 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
TRIP12 MUTATED 3 9 8 11
TRIP12 WILD-TYPE 109 87 84 175
'TRIP12 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S20658.  Gene #1965: 'TRIP12 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
TRIP12 MUTATED 4 2 12 1 1 1 10
TRIP12 WILD-TYPE 56 48 37 39 62 124 89

Figure S5054.  Get High-res Image Gene #1965: 'TRIP12 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'TRIP12 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.697 (Fisher's exact test), Q value = 0.97

Table S20659.  Gene #1965: 'TRIP12 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
TRIP12 MUTATED 9 5 2 14
TRIP12 WILD-TYPE 121 73 66 182
'TRIP12 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00239 (Fisher's exact test), Q value = 0.042

Table S20660.  Gene #1965: 'TRIP12 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
TRIP12 MUTATED 2 5 3 1 12 1 3 2 1
TRIP12 WILD-TYPE 38 57 25 79 57 47 40 26 73

Figure S5055.  Get High-res Image Gene #1965: 'TRIP12 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'TRIP12 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0872 (Fisher's exact test), Q value = 0.32

Table S20661.  Gene #1965: 'TRIP12 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
TRIP12 MUTATED 5 1 0 1
TRIP12 WILD-TYPE 28 30 27 18
'TRIP12 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.779 (Fisher's exact test), Q value = 1

Table S20662.  Gene #1965: 'TRIP12 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
TRIP12 MUTATED 3 0 2 2
TRIP12 WILD-TYPE 51 10 22 20
'BBS2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00554 (Fisher's exact test), Q value = 0.067

Table S20663.  Gene #1966: 'BBS2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
BBS2 MUTATED 2 0 0 4
BBS2 WILD-TYPE 44 58 64 39

Figure S5056.  Get High-res Image Gene #1966: 'BBS2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'BBS2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.881 (Fisher's exact test), Q value = 1

Table S20664.  Gene #1966: 'BBS2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
BBS2 MUTATED 2 2 2
BBS2 WILD-TYPE 49 81 75
'BBS2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0456 (Fisher's exact test), Q value = 0.23

Table S20665.  Gene #1966: 'BBS2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
BBS2 MUTATED 10 2 1 0
BBS2 WILD-TYPE 168 181 100 20

Figure S5057.  Get High-res Image Gene #1966: 'BBS2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'BBS2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.665 (Fisher's exact test), Q value = 0.95

Table S20666.  Gene #1966: 'BBS2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
BBS2 MUTATED 4 2 2
BBS2 WILD-TYPE 83 78 98
'BBS2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0185 (Fisher's exact test), Q value = 0.14

Table S20667.  Gene #1966: 'BBS2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
BBS2 MUTATED 0 4 9
BBS2 WILD-TYPE 89 156 129

Figure S5058.  Get High-res Image Gene #1966: 'BBS2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'BBS2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.203 (Fisher's exact test), Q value = 0.51

Table S20668.  Gene #1966: 'BBS2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
BBS2 MUTATED 7 6 0
BBS2 WILD-TYPE 175 127 72
'BBS2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.881 (Fisher's exact test), Q value = 1

Table S20669.  Gene #1966: 'BBS2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
BBS2 MUTATED 2 3 3 6
BBS2 WILD-TYPE 110 93 89 180
'BBS2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.633 (Fisher's exact test), Q value = 0.93

Table S20670.  Gene #1966: 'BBS2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
BBS2 MUTATED 2 2 2 1 2 1 4
BBS2 WILD-TYPE 58 48 47 39 61 124 95
'BBS2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.878 (Fisher's exact test), Q value = 1

Table S20671.  Gene #1966: 'BBS2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
BBS2 MUTATED 3 3 1 6
BBS2 WILD-TYPE 127 75 67 190
'BBS2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.949 (Fisher's exact test), Q value = 1

Table S20672.  Gene #1966: 'BBS2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
BBS2 MUTATED 1 2 1 3 3 0 1 0 2
BBS2 WILD-TYPE 39 60 27 77 66 48 42 28 72
'PDGFC MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0636 (Fisher's exact test), Q value = 0.27

Table S20673.  Gene #1967: 'PDGFC MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
PDGFC MUTATED 1 0 0 2
PDGFC WILD-TYPE 45 58 64 41
'PDGFC MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S20674.  Gene #1967: 'PDGFC MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
PDGFC MUTATED 1 1 1
PDGFC WILD-TYPE 50 82 76
'PDGFC MUTATION STATUS' versus 'CN_CNMF'

P value = 0.127 (Fisher's exact test), Q value = 0.4

Table S20675.  Gene #1967: 'PDGFC MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
PDGFC MUTATED 7 1 1 0
PDGFC WILD-TYPE 171 182 100 20
'PDGFC MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.14 (Fisher's exact test), Q value = 0.42

Table S20676.  Gene #1967: 'PDGFC MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
PDGFC MUTATED 4 0 2
PDGFC WILD-TYPE 83 80 98
'PDGFC MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.511 (Fisher's exact test), Q value = 0.83

Table S20677.  Gene #1967: 'PDGFC MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
PDGFC MUTATED 1 3 5
PDGFC WILD-TYPE 88 157 133
'PDGFC MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S20678.  Gene #1967: 'PDGFC MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
PDGFC MUTATED 5 3 1
PDGFC WILD-TYPE 177 130 71
'PDGFC MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.782 (Fisher's exact test), Q value = 1

Table S20679.  Gene #1967: 'PDGFC MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
PDGFC MUTATED 2 2 3 3
PDGFC WILD-TYPE 110 94 89 183
'PDGFC MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.162 (Fisher's exact test), Q value = 0.45

Table S20680.  Gene #1967: 'PDGFC MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
PDGFC MUTATED 2 2 2 0 2 0 2
PDGFC WILD-TYPE 58 48 47 40 61 125 97
'PDGFC MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.738 (Fisher's exact test), Q value = 1

Table S20681.  Gene #1967: 'PDGFC MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
PDGFC MUTATED 2 3 1 4
PDGFC WILD-TYPE 128 75 67 192
'PDGFC MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.585 (Fisher's exact test), Q value = 0.89

Table S20682.  Gene #1967: 'PDGFC MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
PDGFC MUTATED 1 2 1 2 2 0 2 0 0
PDGFC WILD-TYPE 39 60 27 78 67 48 41 28 74
'PDGFC MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.907 (Fisher's exact test), Q value = 1

Table S20683.  Gene #1967: 'PDGFC MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
PDGFC MUTATED 2 1 1 0
PDGFC WILD-TYPE 31 30 26 19
'PDGFC MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.868 (Fisher's exact test), Q value = 1

Table S20684.  Gene #1967: 'PDGFC MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
PDGFC MUTATED 3 0 1 0
PDGFC WILD-TYPE 51 10 23 22
'KIF13A MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0413 (Fisher's exact test), Q value = 0.21

Table S20685.  Gene #1968: 'KIF13A MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
KIF13A MUTATED 2 0 1 4
KIF13A WILD-TYPE 44 58 63 39

Figure S5059.  Get High-res Image Gene #1968: 'KIF13A MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'KIF13A MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S20686.  Gene #1968: 'KIF13A MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
KIF13A MUTATED 2 3 2
KIF13A WILD-TYPE 49 80 75
'KIF13A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00718 (Fisher's exact test), Q value = 0.078

Table S20687.  Gene #1968: 'KIF13A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
KIF13A MUTATED 16 3 3 0
KIF13A WILD-TYPE 162 180 98 20

Figure S5060.  Get High-res Image Gene #1968: 'KIF13A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'KIF13A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.133 (Fisher's exact test), Q value = 0.41

Table S20688.  Gene #1968: 'KIF13A MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
KIF13A MUTATED 3 2 9
KIF13A WILD-TYPE 84 78 91
'KIF13A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.14 (Fisher's exact test), Q value = 0.42

Table S20689.  Gene #1968: 'KIF13A MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
KIF13A MUTATED 1 8 9
KIF13A WILD-TYPE 88 152 129
'KIF13A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.295 (Fisher's exact test), Q value = 0.62

Table S20690.  Gene #1968: 'KIF13A MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
KIF13A MUTATED 12 4 2
KIF13A WILD-TYPE 170 129 70
'KIF13A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00343 (Fisher's exact test), Q value = 0.053

Table S20691.  Gene #1968: 'KIF13A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
KIF13A MUTATED 0 8 7 7
KIF13A WILD-TYPE 112 88 85 179

Figure S5061.  Get High-res Image Gene #1968: 'KIF13A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'KIF13A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.003 (Fisher's exact test), Q value = 0.049

Table S20692.  Gene #1968: 'KIF13A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
KIF13A MUTATED 2 1 9 1 2 2 5
KIF13A WILD-TYPE 58 49 40 39 61 123 94

Figure S5062.  Get High-res Image Gene #1968: 'KIF13A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'KIF13A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0679 (Fisher's exact test), Q value = 0.28

Table S20693.  Gene #1968: 'KIF13A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
KIF13A MUTATED 8 6 0 7
KIF13A WILD-TYPE 122 72 68 189
'KIF13A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0391 (Fisher's exact test), Q value = 0.21

Table S20694.  Gene #1968: 'KIF13A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
KIF13A MUTATED 3 8 1 2 4 0 0 1 2
KIF13A WILD-TYPE 37 54 27 78 65 48 43 27 72

Figure S5063.  Get High-res Image Gene #1968: 'KIF13A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'KIF13A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.357 (Fisher's exact test), Q value = 0.69

Table S20695.  Gene #1968: 'KIF13A MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
KIF13A MUTATED 1 1 0 2
KIF13A WILD-TYPE 32 30 27 17
'KIF13A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.219 (Fisher's exact test), Q value = 0.53

Table S20696.  Gene #1968: 'KIF13A MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
KIF13A MUTATED 3 1 0 0
KIF13A WILD-TYPE 51 9 24 22
'KNTC1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00393 (Fisher's exact test), Q value = 0.057

Table S20697.  Gene #1969: 'KNTC1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
KNTC1 MUTATED 3 0 0 4
KNTC1 WILD-TYPE 43 58 64 39

Figure S5064.  Get High-res Image Gene #1969: 'KNTC1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'KNTC1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.549 (Fisher's exact test), Q value = 0.87

Table S20698.  Gene #1969: 'KNTC1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
KNTC1 MUTATED 3 2 2
KNTC1 WILD-TYPE 48 81 75
'KNTC1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00019 (Fisher's exact test), Q value = 0.008

Table S20699.  Gene #1969: 'KNTC1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
KNTC1 MUTATED 20 4 1 0
KNTC1 WILD-TYPE 158 179 100 20

Figure S5065.  Get High-res Image Gene #1969: 'KNTC1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'KNTC1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0298 (Fisher's exact test), Q value = 0.18

Table S20700.  Gene #1969: 'KNTC1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
KNTC1 MUTATED 9 1 9
KNTC1 WILD-TYPE 78 79 91

Figure S5066.  Get High-res Image Gene #1969: 'KNTC1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'KNTC1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.134 (Fisher's exact test), Q value = 0.41

Table S20701.  Gene #1969: 'KNTC1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
KNTC1 MUTATED 2 9 12
KNTC1 WILD-TYPE 87 151 126
'KNTC1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0584 (Fisher's exact test), Q value = 0.26

Table S20702.  Gene #1969: 'KNTC1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
KNTC1 MUTATED 16 6 1
KNTC1 WILD-TYPE 166 127 71
'KNTC1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00126 (Fisher's exact test), Q value = 0.029

Table S20703.  Gene #1969: 'KNTC1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
KNTC1 MUTATED 1 5 12 7
KNTC1 WILD-TYPE 111 91 80 179

Figure S5067.  Get High-res Image Gene #1969: 'KNTC1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'KNTC1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 2e-05 (Fisher's exact test), Q value = 0.0017

Table S20704.  Gene #1969: 'KNTC1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
KNTC1 MUTATED 4 1 11 0 3 1 5
KNTC1 WILD-TYPE 56 49 38 40 60 124 94

Figure S5068.  Get High-res Image Gene #1969: 'KNTC1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'KNTC1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0141 (Fisher's exact test), Q value = 0.12

Table S20705.  Gene #1969: 'KNTC1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
KNTC1 MUTATED 9 8 0 7
KNTC1 WILD-TYPE 121 70 68 189

Figure S5069.  Get High-res Image Gene #1969: 'KNTC1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'KNTC1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0477 (Fisher's exact test), Q value = 0.23

Table S20706.  Gene #1969: 'KNTC1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
KNTC1 MUTATED 2 9 2 4 3 0 2 1 1
KNTC1 WILD-TYPE 38 53 26 76 66 48 41 27 73

Figure S5070.  Get High-res Image Gene #1969: 'KNTC1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'KNTC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0191 (Fisher's exact test), Q value = 0.14

Table S20707.  Gene #1969: 'KNTC1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
KNTC1 MUTATED 2 3 0 5
KNTC1 WILD-TYPE 31 28 27 14

Figure S5071.  Get High-res Image Gene #1969: 'KNTC1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'KNTC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.211 (Fisher's exact test), Q value = 0.52

Table S20708.  Gene #1969: 'KNTC1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
KNTC1 MUTATED 8 0 2 0
KNTC1 WILD-TYPE 46 10 22 22
'TRIM45 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0221 (Fisher's exact test), Q value = 0.15

Table S20709.  Gene #1970: 'TRIM45 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
TRIM45 MUTATED 2 0 0 3
TRIM45 WILD-TYPE 44 58 64 40

Figure S5072.  Get High-res Image Gene #1970: 'TRIM45 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'TRIM45 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00064 (Fisher's exact test), Q value = 0.018

Table S20710.  Gene #1970: 'TRIM45 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
TRIM45 MUTATED 5 0 0
TRIM45 WILD-TYPE 46 83 77

Figure S5073.  Get High-res Image Gene #1970: 'TRIM45 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'TRIM45 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00133 (Fisher's exact test), Q value = 0.03

Table S20711.  Gene #1970: 'TRIM45 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
TRIM45 MUTATED 11 0 2 1
TRIM45 WILD-TYPE 167 183 99 19

Figure S5074.  Get High-res Image Gene #1970: 'TRIM45 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'TRIM45 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0775 (Fisher's exact test), Q value = 0.3

Table S20712.  Gene #1970: 'TRIM45 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
TRIM45 MUTATED 3 0 6
TRIM45 WILD-TYPE 84 80 94
'TRIM45 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.679 (Fisher's exact test), Q value = 0.96

Table S20713.  Gene #1970: 'TRIM45 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
TRIM45 MUTATED 3 3 5
TRIM45 WILD-TYPE 86 157 133
'TRIM45 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.162 (Fisher's exact test), Q value = 0.45

Table S20714.  Gene #1970: 'TRIM45 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
TRIM45 MUTATED 7 1 3
TRIM45 WILD-TYPE 175 132 69
'TRIM45 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0609 (Fisher's exact test), Q value = 0.27

Table S20715.  Gene #1970: 'TRIM45 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
TRIM45 MUTATED 0 5 4 5
TRIM45 WILD-TYPE 112 91 88 181
'TRIM45 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00064 (Fisher's exact test), Q value = 0.018

Table S20716.  Gene #1970: 'TRIM45 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
TRIM45 MUTATED 0 1 6 0 2 0 5
TRIM45 WILD-TYPE 60 49 43 40 61 125 94

Figure S5075.  Get High-res Image Gene #1970: 'TRIM45 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'TRIM45 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.481 (Fisher's exact test), Q value = 0.81

Table S20717.  Gene #1970: 'TRIM45 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
TRIM45 MUTATED 5 2 0 7
TRIM45 WILD-TYPE 125 76 68 189
'TRIM45 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00602 (Fisher's exact test), Q value = 0.071

Table S20718.  Gene #1970: 'TRIM45 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
TRIM45 MUTATED 1 3 2 1 7 0 0 0 0
TRIM45 WILD-TYPE 39 59 26 79 62 48 43 28 74

Figure S5076.  Get High-res Image Gene #1970: 'TRIM45 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'UEVLD MUTATION STATUS' versus 'CN_CNMF'

P value = 0.34 (Fisher's exact test), Q value = 0.67

Table S20719.  Gene #1971: 'UEVLD MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
UEVLD MUTATED 3 0 1 0
UEVLD WILD-TYPE 175 183 100 20
'UEVLD MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.512 (Fisher's exact test), Q value = 0.83

Table S20720.  Gene #1971: 'UEVLD MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
UEVLD MUTATED 2 0 1
UEVLD WILD-TYPE 85 80 99
'UEVLD MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.3 (Fisher's exact test), Q value = 0.63

Table S20721.  Gene #1971: 'UEVLD MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
UEVLD MUTATED 0 2 1 1
UEVLD WILD-TYPE 112 94 91 185
'UEVLD MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0429 (Fisher's exact test), Q value = 0.22

Table S20722.  Gene #1971: 'UEVLD MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
UEVLD MUTATED 1 1 2 0 0 0 0
UEVLD WILD-TYPE 59 49 47 40 63 125 99

Figure S5077.  Get High-res Image Gene #1971: 'UEVLD MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'UEVLD MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S20723.  Gene #1971: 'UEVLD MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
UEVLD MUTATED 1 1 0 2
UEVLD WILD-TYPE 129 77 68 194
'UEVLD MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.834 (Fisher's exact test), Q value = 1

Table S20724.  Gene #1971: 'UEVLD MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
UEVLD MUTATED 0 0 1 1 1 0 0 0 1
UEVLD WILD-TYPE 40 62 27 79 68 48 43 28 73
'PEX2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00069 (Fisher's exact test), Q value = 0.019

Table S20725.  Gene #1972: 'PEX2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
PEX2 MUTATED 10 0 0 0
PEX2 WILD-TYPE 168 183 101 20

Figure S5078.  Get High-res Image Gene #1972: 'PEX2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'PEX2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.032 (Fisher's exact test), Q value = 0.18

Table S20726.  Gene #1972: 'PEX2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
PEX2 MUTATED 2 0 7
PEX2 WILD-TYPE 85 80 93

Figure S5079.  Get High-res Image Gene #1972: 'PEX2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'PEX2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.121 (Fisher's exact test), Q value = 0.39

Table S20727.  Gene #1972: 'PEX2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
PEX2 MUTATED 0 3 6
PEX2 WILD-TYPE 89 157 132
'PEX2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.367 (Fisher's exact test), Q value = 0.7

Table S20728.  Gene #1972: 'PEX2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
PEX2 MUTATED 6 3 0
PEX2 WILD-TYPE 176 130 72
'PEX2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00259 (Fisher's exact test), Q value = 0.044

Table S20729.  Gene #1972: 'PEX2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
PEX2 MUTATED 0 6 3 1
PEX2 WILD-TYPE 112 90 89 185

Figure S5080.  Get High-res Image Gene #1972: 'PEX2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'PEX2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00148 (Fisher's exact test), Q value = 0.031

Table S20730.  Gene #1972: 'PEX2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
PEX2 MUTATED 0 2 5 0 2 0 1
PEX2 WILD-TYPE 60 48 44 40 61 125 98

Figure S5081.  Get High-res Image Gene #1972: 'PEX2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'PEX2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0017 (Fisher's exact test), Q value = 0.034

Table S20731.  Gene #1972: 'PEX2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
PEX2 MUTATED 7 2 0 0
PEX2 WILD-TYPE 123 76 68 196

Figure S5082.  Get High-res Image Gene #1972: 'PEX2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'PEX2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.219 (Fisher's exact test), Q value = 0.53

Table S20732.  Gene #1972: 'PEX2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
PEX2 MUTATED 1 2 1 1 4 0 0 0 0
PEX2 WILD-TYPE 39 60 27 79 65 48 43 28 74
'C16ORF71 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0327 (Fisher's exact test), Q value = 0.18

Table S20733.  Gene #1973: 'C16ORF71 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
C16ORF71 MUTATED 3 0 0 1
C16ORF71 WILD-TYPE 43 58 64 42

Figure S5083.  Get High-res Image Gene #1973: 'C16ORF71 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'C16ORF71 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0609 (Fisher's exact test), Q value = 0.27

Table S20734.  Gene #1973: 'C16ORF71 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
C16ORF71 MUTATED 3 1 0
C16ORF71 WILD-TYPE 48 82 77
'C16ORF71 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0103 (Fisher's exact test), Q value = 0.097

Table S20735.  Gene #1973: 'C16ORF71 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
C16ORF71 MUTATED 7 0 0 0
C16ORF71 WILD-TYPE 171 183 101 20

Figure S5084.  Get High-res Image Gene #1973: 'C16ORF71 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'C16ORF71 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.545 (Fisher's exact test), Q value = 0.86

Table S20736.  Gene #1973: 'C16ORF71 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
C16ORF71 MUTATED 1 1 3
C16ORF71 WILD-TYPE 88 159 135
'C16ORF71 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.719 (Fisher's exact test), Q value = 0.99

Table S20737.  Gene #1973: 'C16ORF71 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
C16ORF71 MUTATED 3 2 0
C16ORF71 WILD-TYPE 179 131 72
'C16ORF71 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.912 (Fisher's exact test), Q value = 1

Table S20738.  Gene #1973: 'C16ORF71 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
C16ORF71 MUTATED 1 1 1 4
C16ORF71 WILD-TYPE 111 95 91 182
'C16ORF71 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.829 (Fisher's exact test), Q value = 1

Table S20739.  Gene #1973: 'C16ORF71 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
C16ORF71 MUTATED 1 1 0 0 1 1 3
C16ORF71 WILD-TYPE 59 49 49 40 62 124 96
'C16ORF71 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.527 (Fisher's exact test), Q value = 0.85

Table S20740.  Gene #1973: 'C16ORF71 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
C16ORF71 MUTATED 1 1 0 5
C16ORF71 WILD-TYPE 129 77 68 191
'C16ORF71 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.81 (Fisher's exact test), Q value = 1

Table S20741.  Gene #1973: 'C16ORF71 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
C16ORF71 MUTATED 0 1 0 2 3 0 0 0 1
C16ORF71 WILD-TYPE 40 61 28 78 66 48 43 28 73
'SLC6A3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.206 (Fisher's exact test), Q value = 0.51

Table S20742.  Gene #1974: 'SLC6A3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
SLC6A3 MUTATED 6 1 1 0
SLC6A3 WILD-TYPE 172 182 100 20
'SLC6A3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0202 (Fisher's exact test), Q value = 0.14

Table S20743.  Gene #1974: 'SLC6A3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
SLC6A3 MUTATED 0 1 6
SLC6A3 WILD-TYPE 87 79 94

Figure S5085.  Get High-res Image Gene #1974: 'SLC6A3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'SLC6A3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.51 (Fisher's exact test), Q value = 0.83

Table S20744.  Gene #1974: 'SLC6A3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
SLC6A3 MUTATED 0 3 3
SLC6A3 WILD-TYPE 89 157 135
'SLC6A3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.578 (Fisher's exact test), Q value = 0.88

Table S20745.  Gene #1974: 'SLC6A3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
SLC6A3 MUTATED 3 3 0
SLC6A3 WILD-TYPE 179 130 72
'SLC6A3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0097 (Fisher's exact test), Q value = 0.094

Table S20746.  Gene #1974: 'SLC6A3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
SLC6A3 MUTATED 1 4 3 0
SLC6A3 WILD-TYPE 111 92 89 186

Figure S5086.  Get High-res Image Gene #1974: 'SLC6A3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'SLC6A3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00146 (Fisher's exact test), Q value = 0.031

Table S20747.  Gene #1974: 'SLC6A3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
SLC6A3 MUTATED 1 0 5 0 0 0 2
SLC6A3 WILD-TYPE 59 50 44 40 63 125 97

Figure S5087.  Get High-res Image Gene #1974: 'SLC6A3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'SLC6A3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.567 (Fisher's exact test), Q value = 0.87

Table S20748.  Gene #1974: 'SLC6A3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
SLC6A3 MUTATED 4 1 1 2
SLC6A3 WILD-TYPE 126 77 67 194
'SLC6A3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.212 (Fisher's exact test), Q value = 0.52

Table S20749.  Gene #1974: 'SLC6A3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
SLC6A3 MUTATED 1 1 0 1 4 0 0 1 0
SLC6A3 WILD-TYPE 39 61 28 79 65 48 43 27 74
'MLNR MUTATION STATUS' versus 'CN_CNMF'

P value = 0.276 (Fisher's exact test), Q value = 0.6

Table S20750.  Gene #1975: 'MLNR MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
MLNR MUTATED 3 0 0 0
MLNR WILD-TYPE 175 183 101 20
'MLNR MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.112 (Fisher's exact test), Q value = 0.37

Table S20751.  Gene #1975: 'MLNR MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
MLNR MUTATED 2 0 1
MLNR WILD-TYPE 87 160 137
'MLNR MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.592 (Fisher's exact test), Q value = 0.9

Table S20752.  Gene #1975: 'MLNR MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
MLNR MUTATED 1 2 0
MLNR WILD-TYPE 181 131 72
'MLNR MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.84 (Fisher's exact test), Q value = 1

Table S20753.  Gene #1975: 'MLNR MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
MLNR MUTATED 1 0 1 2
MLNR WILD-TYPE 111 96 91 184
'MLNR MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.354 (Fisher's exact test), Q value = 0.68

Table S20754.  Gene #1975: 'MLNR MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
MLNR MUTATED 1 0 1 0 0 0 2
MLNR WILD-TYPE 59 50 48 40 63 125 97
'MLNR MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.823 (Fisher's exact test), Q value = 1

Table S20755.  Gene #1975: 'MLNR MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
MLNR MUTATED 1 0 0 3
MLNR WILD-TYPE 129 78 68 193
'MLNR MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.39 (Fisher's exact test), Q value = 0.72

Table S20756.  Gene #1975: 'MLNR MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
MLNR MUTATED 0 0 0 1 2 0 0 1 0
MLNR WILD-TYPE 40 62 28 79 67 48 43 27 74
'GSK3B MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.136 (Fisher's exact test), Q value = 0.41

Table S20757.  Gene #1976: 'GSK3B MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
GSK3B MUTATED 3 0 1 2
GSK3B WILD-TYPE 43 58 63 41
'GSK3B MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.119 (Fisher's exact test), Q value = 0.38

Table S20758.  Gene #1976: 'GSK3B MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
GSK3B MUTATED 3 3 0
GSK3B WILD-TYPE 48 80 77
'GSK3B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0929 (Fisher's exact test), Q value = 0.33

Table S20759.  Gene #1976: 'GSK3B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
GSK3B MUTATED 10 3 1 0
GSK3B WILD-TYPE 168 180 100 20
'GSK3B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.477 (Fisher's exact test), Q value = 0.81

Table S20760.  Gene #1976: 'GSK3B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
GSK3B MUTATED 4 1 4
GSK3B WILD-TYPE 83 79 96
'GSK3B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.795 (Fisher's exact test), Q value = 1

Table S20761.  Gene #1976: 'GSK3B MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
GSK3B MUTATED 2 4 5
GSK3B WILD-TYPE 87 156 133
'GSK3B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.782 (Fisher's exact test), Q value = 1

Table S20762.  Gene #1976: 'GSK3B MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
GSK3B MUTATED 5 5 1
GSK3B WILD-TYPE 177 128 71
'GSK3B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.301 (Fisher's exact test), Q value = 0.63

Table S20763.  Gene #1976: 'GSK3B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
GSK3B MUTATED 2 6 2 5
GSK3B WILD-TYPE 110 90 90 181
'GSK3B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.739 (Fisher's exact test), Q value = 1

Table S20764.  Gene #1976: 'GSK3B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
GSK3B MUTATED 1 3 2 1 2 2 4
GSK3B WILD-TYPE 59 47 47 39 61 123 95
'GSK3B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.388 (Fisher's exact test), Q value = 0.71

Table S20765.  Gene #1976: 'GSK3B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
GSK3B MUTATED 5 2 0 8
GSK3B WILD-TYPE 125 76 68 188
'GSK3B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.811 (Fisher's exact test), Q value = 1

Table S20766.  Gene #1976: 'GSK3B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
GSK3B MUTATED 1 2 2 2 3 0 2 1 2
GSK3B WILD-TYPE 39 60 26 78 66 48 41 27 72
'ZNF462 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0134 (Fisher's exact test), Q value = 0.11

Table S20767.  Gene #1977: 'ZNF462 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ZNF462 MUTATED 5 1 0 2
ZNF462 WILD-TYPE 41 57 64 41

Figure S5088.  Get High-res Image Gene #1977: 'ZNF462 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'ZNF462 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.152 (Fisher's exact test), Q value = 0.44

Table S20768.  Gene #1977: 'ZNF462 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ZNF462 MUTATED 4 3 1
ZNF462 WILD-TYPE 47 80 76
'ZNF462 MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S20769.  Gene #1977: 'ZNF462 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ZNF462 MUTATED 22 3 0 3
ZNF462 WILD-TYPE 156 180 101 17

Figure S5089.  Get High-res Image Gene #1977: 'ZNF462 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ZNF462 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.184 (Fisher's exact test), Q value = 0.48

Table S20770.  Gene #1977: 'ZNF462 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ZNF462 MUTATED 7 2 9
ZNF462 WILD-TYPE 80 78 91
'ZNF462 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0613 (Fisher's exact test), Q value = 0.27

Table S20771.  Gene #1977: 'ZNF462 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ZNF462 MUTATED 2 7 13
ZNF462 WILD-TYPE 87 153 125
'ZNF462 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.168 (Fisher's exact test), Q value = 0.46

Table S20772.  Gene #1977: 'ZNF462 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ZNF462 MUTATED 11 10 1
ZNF462 WILD-TYPE 171 123 71
'ZNF462 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.218 (Fisher's exact test), Q value = 0.53

Table S20773.  Gene #1977: 'ZNF462 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ZNF462 MUTATED 4 8 8 8
ZNF462 WILD-TYPE 108 88 84 178
'ZNF462 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 4e-05 (Fisher's exact test), Q value = 0.0027

Table S20774.  Gene #1977: 'ZNF462 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ZNF462 MUTATED 1 5 11 0 3 2 6
ZNF462 WILD-TYPE 59 45 38 40 60 123 93

Figure S5090.  Get High-res Image Gene #1977: 'ZNF462 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ZNF462 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.39 (Fisher's exact test), Q value = 0.72

Table S20775.  Gene #1977: 'ZNF462 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ZNF462 MUTATED 9 4 1 13
ZNF462 WILD-TYPE 121 74 67 183
'ZNF462 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00262 (Fisher's exact test), Q value = 0.045

Table S20776.  Gene #1977: 'ZNF462 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ZNF462 MUTATED 3 7 1 3 10 0 0 2 1
ZNF462 WILD-TYPE 37 55 27 77 59 48 43 26 73

Figure S5091.  Get High-res Image Gene #1977: 'ZNF462 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'ZNF462 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0696 (Fisher's exact test), Q value = 0.28

Table S20777.  Gene #1977: 'ZNF462 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
ZNF462 MUTATED 1 1 1 4
ZNF462 WILD-TYPE 32 30 26 15
'ZNF462 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.142 (Fisher's exact test), Q value = 0.42

Table S20778.  Gene #1977: 'ZNF462 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
ZNF462 MUTATED 3 0 4 0
ZNF462 WILD-TYPE 51 10 20 22
'HOXD9 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.387 (Fisher's exact test), Q value = 0.71

Table S20779.  Gene #1978: 'HOXD9 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
HOXD9 MUTATED 4 1 0 0
HOXD9 WILD-TYPE 174 182 101 20
'HOXD9 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.78 (Fisher's exact test), Q value = 1

Table S20780.  Gene #1978: 'HOXD9 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
HOXD9 MUTATED 1 0 2
HOXD9 WILD-TYPE 86 80 98
'HOXD9 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.845 (Fisher's exact test), Q value = 1

Table S20781.  Gene #1978: 'HOXD9 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
HOXD9 MUTATED 1 3 1
HOXD9 WILD-TYPE 88 157 137
'HOXD9 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.853 (Fisher's exact test), Q value = 1

Table S20782.  Gene #1978: 'HOXD9 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
HOXD9 MUTATED 3 1 1
HOXD9 WILD-TYPE 179 132 71
'HOXD9 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.487 (Fisher's exact test), Q value = 0.81

Table S20783.  Gene #1978: 'HOXD9 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
HOXD9 MUTATED 0 2 1 2
HOXD9 WILD-TYPE 112 94 91 184
'HOXD9 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0403 (Fisher's exact test), Q value = 0.21

Table S20784.  Gene #1978: 'HOXD9 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
HOXD9 MUTATED 1 0 3 0 0 1 0
HOXD9 WILD-TYPE 59 50 46 40 63 124 99

Figure S5092.  Get High-res Image Gene #1978: 'HOXD9 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'HOXD9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.687 (Fisher's exact test), Q value = 0.97

Table S20785.  Gene #1978: 'HOXD9 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
HOXD9 MUTATED 2 0 0 3
HOXD9 WILD-TYPE 128 78 68 193
'HOXD9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.751 (Fisher's exact test), Q value = 1

Table S20786.  Gene #1978: 'HOXD9 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
HOXD9 MUTATED 1 1 0 0 2 0 0 0 1
HOXD9 WILD-TYPE 39 61 28 80 67 48 43 28 73
'MGEA5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0182 (Fisher's exact test), Q value = 0.13

Table S20787.  Gene #1979: 'MGEA5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
MGEA5 MUTATED 6 0 1 1
MGEA5 WILD-TYPE 172 183 100 19

Figure S5093.  Get High-res Image Gene #1979: 'MGEA5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'MGEA5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.517 (Fisher's exact test), Q value = 0.84

Table S20788.  Gene #1979: 'MGEA5 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
MGEA5 MUTATED 3 2 1
MGEA5 WILD-TYPE 84 78 99
'MGEA5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.163 (Fisher's exact test), Q value = 0.46

Table S20789.  Gene #1979: 'MGEA5 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
MGEA5 MUTATED 1 1 5
MGEA5 WILD-TYPE 88 159 133
'MGEA5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S20790.  Gene #1979: 'MGEA5 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
MGEA5 MUTATED 4 2 1
MGEA5 WILD-TYPE 178 131 71
'MGEA5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.561 (Fisher's exact test), Q value = 0.87

Table S20791.  Gene #1979: 'MGEA5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
MGEA5 MUTATED 1 3 2 2
MGEA5 WILD-TYPE 111 93 90 184
'MGEA5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.79 (Fisher's exact test), Q value = 1

Table S20792.  Gene #1979: 'MGEA5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
MGEA5 MUTATED 1 1 1 1 2 1 1
MGEA5 WILD-TYPE 59 49 48 39 61 124 98
'MGEA5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.954 (Fisher's exact test), Q value = 1

Table S20793.  Gene #1979: 'MGEA5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
MGEA5 MUTATED 3 1 1 3
MGEA5 WILD-TYPE 127 77 67 193
'MGEA5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.571 (Fisher's exact test), Q value = 0.88

Table S20794.  Gene #1979: 'MGEA5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
MGEA5 MUTATED 1 1 1 0 2 0 1 1 1
MGEA5 WILD-TYPE 39 61 27 80 67 48 42 27 73
'C7ORF33 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.222 (Fisher's exact test), Q value = 0.54

Table S20795.  Gene #1980: 'C7ORF33 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
C7ORF33 MUTATED 2 1 0 2
C7ORF33 WILD-TYPE 44 57 64 41
'C7ORF33 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.117 (Fisher's exact test), Q value = 0.38

Table S20796.  Gene #1980: 'C7ORF33 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
C7ORF33 MUTATED 2 0 3
C7ORF33 WILD-TYPE 49 83 74
'C7ORF33 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0218 (Fisher's exact test), Q value = 0.15

Table S20797.  Gene #1980: 'C7ORF33 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
C7ORF33 MUTATED 6 0 0 0
C7ORF33 WILD-TYPE 172 183 101 20

Figure S5094.  Get High-res Image Gene #1980: 'C7ORF33 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'C7ORF33 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.139 (Fisher's exact test), Q value = 0.41

Table S20798.  Gene #1980: 'C7ORF33 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
C7ORF33 MUTATED 0 1 4
C7ORF33 WILD-TYPE 89 159 134
'C7ORF33 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.85 (Fisher's exact test), Q value = 1

Table S20799.  Gene #1980: 'C7ORF33 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
C7ORF33 MUTATED 3 1 1
C7ORF33 WILD-TYPE 179 132 71
'C7ORF33 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.144 (Fisher's exact test), Q value = 0.42

Table S20800.  Gene #1980: 'C7ORF33 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
C7ORF33 MUTATED 0 0 1 5
C7ORF33 WILD-TYPE 112 96 91 181
'C7ORF33 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.609 (Fisher's exact test), Q value = 0.91

Table S20801.  Gene #1980: 'C7ORF33 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
C7ORF33 MUTATED 1 0 1 0 0 1 3
C7ORF33 WILD-TYPE 59 50 48 40 63 124 96
'C7ORF33 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.207 (Fisher's exact test), Q value = 0.51

Table S20802.  Gene #1980: 'C7ORF33 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
C7ORF33 MUTATED 0 1 0 5
C7ORF33 WILD-TYPE 130 77 68 191
'C7ORF33 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.363 (Fisher's exact test), Q value = 0.69

Table S20803.  Gene #1980: 'C7ORF33 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
C7ORF33 MUTATED 0 1 1 1 3 0 0 0 0
C7ORF33 WILD-TYPE 40 61 27 79 66 48 43 28 74
'ATP2C2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00496 (Fisher's exact test), Q value = 0.064

Table S20804.  Gene #1981: 'ATP2C2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ATP2C2 MUTATED 10 1 0 0
ATP2C2 WILD-TYPE 168 182 101 20

Figure S5095.  Get High-res Image Gene #1981: 'ATP2C2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ATP2C2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0774 (Fisher's exact test), Q value = 0.3

Table S20805.  Gene #1981: 'ATP2C2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ATP2C2 MUTATED 3 0 6
ATP2C2 WILD-TYPE 84 80 94
'ATP2C2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.31 (Fisher's exact test), Q value = 0.64

Table S20806.  Gene #1981: 'ATP2C2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ATP2C2 MUTATED 0 4 4
ATP2C2 WILD-TYPE 89 156 134
'ATP2C2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S20807.  Gene #1981: 'ATP2C2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ATP2C2 MUTATED 4 3 1
ATP2C2 WILD-TYPE 178 130 71
'ATP2C2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00921 (Fisher's exact test), Q value = 0.09

Table S20808.  Gene #1981: 'ATP2C2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ATP2C2 MUTATED 0 6 3 2
ATP2C2 WILD-TYPE 112 90 89 184

Figure S5096.  Get High-res Image Gene #1981: 'ATP2C2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'ATP2C2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 2e-05 (Fisher's exact test), Q value = 0.0017

Table S20809.  Gene #1981: 'ATP2C2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ATP2C2 MUTATED 0 0 8 0 1 1 1
ATP2C2 WILD-TYPE 60 50 41 40 62 124 98

Figure S5097.  Get High-res Image Gene #1981: 'ATP2C2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ATP2C2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.227 (Fisher's exact test), Q value = 0.55

Table S20810.  Gene #1981: 'ATP2C2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ATP2C2 MUTATED 5 3 1 2
ATP2C2 WILD-TYPE 125 75 67 194
'ATP2C2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0696 (Fisher's exact test), Q value = 0.28

Table S20811.  Gene #1981: 'ATP2C2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ATP2C2 MUTATED 1 3 1 0 5 0 0 0 1
ATP2C2 WILD-TYPE 39 59 27 80 64 48 43 28 73
'ATP2C2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00081 (Fisher's exact test), Q value = 0.021

Table S20812.  Gene #1981: 'ATP2C2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
ATP2C2 MUTATED 0 0 0 4
ATP2C2 WILD-TYPE 33 31 27 15

Figure S5098.  Get High-res Image Gene #1981: 'ATP2C2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'ATP2C2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00694 (Fisher's exact test), Q value = 0.077

Table S20813.  Gene #1981: 'ATP2C2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
ATP2C2 MUTATED 0 0 4 0
ATP2C2 WILD-TYPE 54 10 20 22

Figure S5099.  Get High-res Image Gene #1981: 'ATP2C2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

'DCAF8L1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00136 (Fisher's exact test), Q value = 0.03

Table S20814.  Gene #1982: 'DCAF8L1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
DCAF8L1 MUTATED 2 0 0 5
DCAF8L1 WILD-TYPE 44 58 64 38

Figure S5100.  Get High-res Image Gene #1982: 'DCAF8L1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'DCAF8L1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.305 (Fisher's exact test), Q value = 0.63

Table S20815.  Gene #1982: 'DCAF8L1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
DCAF8L1 MUTATED 3 1 3
DCAF8L1 WILD-TYPE 48 82 74
'DCAF8L1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0172 (Fisher's exact test), Q value = 0.13

Table S20816.  Gene #1982: 'DCAF8L1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
DCAF8L1 MUTATED 13 2 3 0
DCAF8L1 WILD-TYPE 165 181 98 20

Figure S5101.  Get High-res Image Gene #1982: 'DCAF8L1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'DCAF8L1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.737 (Fisher's exact test), Q value = 1

Table S20817.  Gene #1982: 'DCAF8L1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
DCAF8L1 MUTATED 4 2 5
DCAF8L1 WILD-TYPE 83 78 95
'DCAF8L1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.63 (Fisher's exact test), Q value = 0.93

Table S20818.  Gene #1982: 'DCAF8L1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
DCAF8L1 MUTATED 2 8 5
DCAF8L1 WILD-TYPE 87 152 133
'DCAF8L1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.575 (Fisher's exact test), Q value = 0.88

Table S20819.  Gene #1982: 'DCAF8L1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
DCAF8L1 MUTATED 8 6 1
DCAF8L1 WILD-TYPE 174 127 71
'DCAF8L1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.621 (Fisher's exact test), Q value = 0.92

Table S20820.  Gene #1982: 'DCAF8L1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
DCAF8L1 MUTATED 3 5 4 5
DCAF8L1 WILD-TYPE 109 91 88 181
'DCAF8L1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.141 (Fisher's exact test), Q value = 0.42

Table S20821.  Gene #1982: 'DCAF8L1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
DCAF8L1 MUTATED 2 5 3 0 2 2 3
DCAF8L1 WILD-TYPE 58 45 46 40 61 123 96
'DCAF8L1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.85 (Fisher's exact test), Q value = 1

Table S20822.  Gene #1982: 'DCAF8L1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
DCAF8L1 MUTATED 5 3 1 8
DCAF8L1 WILD-TYPE 125 75 67 188
'DCAF8L1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.511 (Fisher's exact test), Q value = 0.83

Table S20823.  Gene #1982: 'DCAF8L1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
DCAF8L1 MUTATED 2 3 2 1 4 0 2 1 2
DCAF8L1 WILD-TYPE 38 59 26 79 65 48 41 27 72
'DCAF8L1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.136 (Fisher's exact test), Q value = 0.41

Table S20824.  Gene #1982: 'DCAF8L1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
DCAF8L1 MUTATED 1 0 0 2
DCAF8L1 WILD-TYPE 32 31 27 17
'DCAF8L1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S20825.  Gene #1982: 'DCAF8L1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
DCAF8L1 MUTATED 2 0 1 0
DCAF8L1 WILD-TYPE 52 10 23 22
'CENPA MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0727 (Fisher's exact test), Q value = 0.29

Table S20826.  Gene #1983: 'CENPA MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
CENPA MUTATED 2 0 0 2
CENPA WILD-TYPE 44 58 64 41
'CENPA MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0617 (Fisher's exact test), Q value = 0.27

Table S20827.  Gene #1983: 'CENPA MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
CENPA MUTATED 3 1 0
CENPA WILD-TYPE 48 82 77
'CENPA MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0436 (Fisher's exact test), Q value = 0.22

Table S20828.  Gene #1983: 'CENPA MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
CENPA MUTATED 5 0 0 0
CENPA WILD-TYPE 173 183 101 20

Figure S5102.  Get High-res Image Gene #1983: 'CENPA MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'CENPA MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S20829.  Gene #1983: 'CENPA MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
CENPA MUTATED 1 2 2
CENPA WILD-TYPE 88 158 136
'CENPA MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.269 (Fisher's exact test), Q value = 0.59

Table S20830.  Gene #1983: 'CENPA MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
CENPA MUTATED 1 2 2
CENPA WILD-TYPE 181 131 70
'CENPA MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.304 (Fisher's exact test), Q value = 0.63

Table S20831.  Gene #1983: 'CENPA MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
CENPA MUTATED 0 1 0 4
CENPA WILD-TYPE 112 95 92 182
'CENPA MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0634 (Fisher's exact test), Q value = 0.27

Table S20832.  Gene #1983: 'CENPA MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
CENPA MUTATED 0 1 0 0 0 0 4
CENPA WILD-TYPE 60 49 49 40 63 125 95
'CENPA MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.271 (Fisher's exact test), Q value = 0.6

Table S20833.  Gene #1983: 'CENPA MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
CENPA MUTATED 0 0 0 4
CENPA WILD-TYPE 130 78 68 192
'CENPA MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.838 (Fisher's exact test), Q value = 1

Table S20834.  Gene #1983: 'CENPA MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
CENPA MUTATED 0 0 1 1 1 0 0 0 1
CENPA WILD-TYPE 40 62 27 79 68 48 43 28 73
'MST1R MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0165 (Fisher's exact test), Q value = 0.13

Table S20835.  Gene #1984: 'MST1R MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
MST1R MUTATED 9 2 1 2
MST1R WILD-TYPE 169 181 100 18

Figure S5103.  Get High-res Image Gene #1984: 'MST1R MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'MST1R MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.167 (Fisher's exact test), Q value = 0.46

Table S20836.  Gene #1984: 'MST1R MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
MST1R MUTATED 5 1 7
MST1R WILD-TYPE 82 79 93
'MST1R MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.245 (Fisher's exact test), Q value = 0.57

Table S20837.  Gene #1984: 'MST1R MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
MST1R MUTATED 1 4 7
MST1R WILD-TYPE 88 156 131
'MST1R MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.105 (Fisher's exact test), Q value = 0.36

Table S20838.  Gene #1984: 'MST1R MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
MST1R MUTATED 9 3 0
MST1R WILD-TYPE 173 130 72
'MST1R MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00147 (Fisher's exact test), Q value = 0.031

Table S20839.  Gene #1984: 'MST1R MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
MST1R MUTATED 1 5 7 1
MST1R WILD-TYPE 111 91 85 185

Figure S5104.  Get High-res Image Gene #1984: 'MST1R MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'MST1R MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S20840.  Gene #1984: 'MST1R MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
MST1R MUTATED 0 1 9 1 2 0 1
MST1R WILD-TYPE 60 49 40 39 61 125 98

Figure S5105.  Get High-res Image Gene #1984: 'MST1R MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'MST1R MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00147 (Fisher's exact test), Q value = 0.031

Table S20841.  Gene #1984: 'MST1R MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
MST1R MUTATED 9 4 0 1
MST1R WILD-TYPE 121 74 68 195

Figure S5106.  Get High-res Image Gene #1984: 'MST1R MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'MST1R MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0027 (Fisher's exact test), Q value = 0.046

Table S20842.  Gene #1984: 'MST1R MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
MST1R MUTATED 2 7 1 0 3 1 0 0 0
MST1R WILD-TYPE 38 55 27 80 66 47 43 28 74

Figure S5107.  Get High-res Image Gene #1984: 'MST1R MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'MST1R MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.307 (Fisher's exact test), Q value = 0.64

Table S20843.  Gene #1984: 'MST1R MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
MST1R MUTATED 3 1 0 2
MST1R WILD-TYPE 30 30 27 17
'MST1R MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.568 (Fisher's exact test), Q value = 0.88

Table S20844.  Gene #1984: 'MST1R MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
MST1R MUTATED 5 0 1 0
MST1R WILD-TYPE 49 10 23 22
'NONO MUTATION STATUS' versus 'CN_CNMF'

P value = 0.451 (Fisher's exact test), Q value = 0.78

Table S20845.  Gene #1985: 'NONO MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
NONO MUTATED 6 3 2 1
NONO WILD-TYPE 172 180 99 19
'NONO MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.309 (Fisher's exact test), Q value = 0.64

Table S20846.  Gene #1985: 'NONO MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
NONO MUTATED 5 1 4
NONO WILD-TYPE 82 79 96
'NONO MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.32 (Fisher's exact test), Q value = 0.65

Table S20847.  Gene #1985: 'NONO MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
NONO MUTATED 1 3 6
NONO WILD-TYPE 88 157 132
'NONO MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.84 (Fisher's exact test), Q value = 1

Table S20848.  Gene #1985: 'NONO MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
NONO MUTATED 4 4 2
NONO WILD-TYPE 178 129 70
'NONO MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0204 (Fisher's exact test), Q value = 0.14

Table S20849.  Gene #1985: 'NONO MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
NONO MUTATED 2 6 3 1
NONO WILD-TYPE 110 90 89 185

Figure S5108.  Get High-res Image Gene #1985: 'NONO MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'NONO MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0342 (Fisher's exact test), Q value = 0.19

Table S20850.  Gene #1985: 'NONO MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
NONO MUTATED 3 4 2 1 0 1 1
NONO WILD-TYPE 57 46 47 39 63 124 98

Figure S5109.  Get High-res Image Gene #1985: 'NONO MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'NONO MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.391 (Fisher's exact test), Q value = 0.72

Table S20851.  Gene #1985: 'NONO MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
NONO MUTATED 6 2 1 3
NONO WILD-TYPE 124 76 67 193
'NONO MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.303 (Fisher's exact test), Q value = 0.63

Table S20852.  Gene #1985: 'NONO MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
NONO MUTATED 3 1 2 1 1 1 2 0 1
NONO WILD-TYPE 37 61 26 79 68 47 41 28 73
'NONO MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.596 (Fisher's exact test), Q value = 0.9

Table S20853.  Gene #1985: 'NONO MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
NONO MUTATED 2 0 1 1
NONO WILD-TYPE 31 31 26 18
'NONO MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.671 (Fisher's exact test), Q value = 0.95

Table S20854.  Gene #1985: 'NONO MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
NONO MUTATED 2 0 2 0
NONO WILD-TYPE 52 10 22 22
'CYP2C9 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.222 (Fisher's exact test), Q value = 0.54

Table S20855.  Gene #1986: 'CYP2C9 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
CYP2C9 MUTATED 2 1 0 2
CYP2C9 WILD-TYPE 44 57 64 41
'CYP2C9 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.738 (Fisher's exact test), Q value = 1

Table S20856.  Gene #1986: 'CYP2C9 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
CYP2C9 MUTATED 2 2 1
CYP2C9 WILD-TYPE 49 81 76
'CYP2C9 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.748 (Fisher's exact test), Q value = 1

Table S20857.  Gene #1986: 'CYP2C9 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
CYP2C9 MUTATED 5 3 1 0
CYP2C9 WILD-TYPE 173 180 100 20
'CYP2C9 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.466 (Fisher's exact test), Q value = 0.79

Table S20858.  Gene #1986: 'CYP2C9 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
CYP2C9 MUTATED 0 2 2
CYP2C9 WILD-TYPE 87 78 98
'CYP2C9 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.311 (Fisher's exact test), Q value = 0.64

Table S20859.  Gene #1986: 'CYP2C9 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
CYP2C9 MUTATED 0 4 4
CYP2C9 WILD-TYPE 89 156 134
'CYP2C9 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.372 (Fisher's exact test), Q value = 0.7

Table S20860.  Gene #1986: 'CYP2C9 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
CYP2C9 MUTATED 3 2 3
CYP2C9 WILD-TYPE 179 131 69
'CYP2C9 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.515 (Fisher's exact test), Q value = 0.84

Table S20861.  Gene #1986: 'CYP2C9 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
CYP2C9 MUTATED 2 2 0 5
CYP2C9 WILD-TYPE 110 94 92 181
'CYP2C9 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.862 (Fisher's exact test), Q value = 1

Table S20862.  Gene #1986: 'CYP2C9 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
CYP2C9 MUTATED 2 1 1 1 0 2 2
CYP2C9 WILD-TYPE 58 49 48 39 63 123 97
'CYP2C9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.61 (Fisher's exact test), Q value = 0.91

Table S20863.  Gene #1986: 'CYP2C9 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
CYP2C9 MUTATED 2 0 1 5
CYP2C9 WILD-TYPE 128 78 67 191
'CYP2C9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.171 (Fisher's exact test), Q value = 0.47

Table S20864.  Gene #1986: 'CYP2C9 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
CYP2C9 MUTATED 2 0 0 1 3 0 1 1 0
CYP2C9 WILD-TYPE 38 62 28 79 66 48 42 27 74
'ADAM33 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.787 (Fisher's exact test), Q value = 1

Table S20865.  Gene #1987: 'ADAM33 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ADAM33 MUTATED 1 0 1 1
ADAM33 WILD-TYPE 45 58 63 42
'ADAM33 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S20866.  Gene #1987: 'ADAM33 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ADAM33 MUTATED 1 1 1
ADAM33 WILD-TYPE 50 82 76
'ADAM33 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.327 (Fisher's exact test), Q value = 0.66

Table S20867.  Gene #1987: 'ADAM33 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ADAM33 MUTATED 5 1 1 0
ADAM33 WILD-TYPE 173 182 100 20
'ADAM33 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S20868.  Gene #1987: 'ADAM33 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ADAM33 MUTATED 1 1 2
ADAM33 WILD-TYPE 86 79 98
'ADAM33 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.33 (Fisher's exact test), Q value = 0.66

Table S20869.  Gene #1987: 'ADAM33 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ADAM33 MUTATED 1 1 4
ADAM33 WILD-TYPE 88 159 134
'ADAM33 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.496 (Fisher's exact test), Q value = 0.82

Table S20870.  Gene #1987: 'ADAM33 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ADAM33 MUTATED 2 2 2
ADAM33 WILD-TYPE 180 131 70
'ADAM33 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.76 (Fisher's exact test), Q value = 1

Table S20871.  Gene #1987: 'ADAM33 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ADAM33 MUTATED 1 2 2 2
ADAM33 WILD-TYPE 111 94 90 184
'ADAM33 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.38 (Fisher's exact test), Q value = 0.71

Table S20872.  Gene #1987: 'ADAM33 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ADAM33 MUTATED 0 0 2 0 2 1 2
ADAM33 WILD-TYPE 60 50 47 40 61 124 97
'ADAM33 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.69 (Fisher's exact test), Q value = 0.97

Table S20873.  Gene #1987: 'ADAM33 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ADAM33 MUTATED 2 2 0 3
ADAM33 WILD-TYPE 128 76 68 193
'ADAM33 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.702 (Fisher's exact test), Q value = 0.97

Table S20874.  Gene #1987: 'ADAM33 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ADAM33 MUTATED 0 2 0 1 3 0 0 0 1
ADAM33 WILD-TYPE 40 60 28 79 66 48 43 28 73
'DYRK4 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.403 (Fisher's exact test), Q value = 0.73

Table S20875.  Gene #1988: 'DYRK4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
DYRK4 MUTATED 1 0 1 2
DYRK4 WILD-TYPE 45 58 63 41
'DYRK4 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.178 (Fisher's exact test), Q value = 0.48

Table S20876.  Gene #1988: 'DYRK4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
DYRK4 MUTATED 1 0 3
DYRK4 WILD-TYPE 50 83 74
'DYRK4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0477 (Fisher's exact test), Q value = 0.23

Table S20877.  Gene #1988: 'DYRK4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
DYRK4 MUTATED 8 2 2 2
DYRK4 WILD-TYPE 170 181 99 18

Figure S5110.  Get High-res Image Gene #1988: 'DYRK4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'DYRK4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.258 (Fisher's exact test), Q value = 0.58

Table S20878.  Gene #1988: 'DYRK4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
DYRK4 MUTATED 3 1 6
DYRK4 WILD-TYPE 84 79 94
'DYRK4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.243 (Fisher's exact test), Q value = 0.57

Table S20879.  Gene #1988: 'DYRK4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
DYRK4 MUTATED 1 7 2
DYRK4 WILD-TYPE 88 153 136
'DYRK4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S20880.  Gene #1988: 'DYRK4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
DYRK4 MUTATED 5 3 2
DYRK4 WILD-TYPE 177 130 70
'DYRK4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.213 (Fisher's exact test), Q value = 0.52

Table S20881.  Gene #1988: 'DYRK4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
DYRK4 MUTATED 1 5 4 4
DYRK4 WILD-TYPE 111 91 88 182
'DYRK4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0135 (Fisher's exact test), Q value = 0.11

Table S20882.  Gene #1988: 'DYRK4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
DYRK4 MUTATED 2 2 5 0 2 0 3
DYRK4 WILD-TYPE 58 48 44 40 61 125 96

Figure S5111.  Get High-res Image Gene #1988: 'DYRK4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'DYRK4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0629 (Fisher's exact test), Q value = 0.27

Table S20883.  Gene #1988: 'DYRK4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
DYRK4 MUTATED 4 6 1 3
DYRK4 WILD-TYPE 126 72 67 193
'DYRK4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.566 (Fisher's exact test), Q value = 0.87

Table S20884.  Gene #1988: 'DYRK4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
DYRK4 MUTATED 3 3 0 2 3 1 0 1 1
DYRK4 WILD-TYPE 37 59 28 78 66 47 43 27 73
'DYRK4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.483 (Fisher's exact test), Q value = 0.81

Table S20885.  Gene #1988: 'DYRK4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
DYRK4 MUTATED 2 0 1 0
DYRK4 WILD-TYPE 31 31 26 19
'DYRK4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S20886.  Gene #1988: 'DYRK4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
DYRK4 MUTATED 2 0 1 0
DYRK4 WILD-TYPE 52 10 23 22
'ZMIZ1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.121 (Fisher's exact test), Q value = 0.39

Table S20887.  Gene #1989: 'ZMIZ1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ZMIZ1 MUTATED 2 0 0 1
ZMIZ1 WILD-TYPE 44 58 64 42
'ZMIZ1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.182 (Fisher's exact test), Q value = 0.48

Table S20888.  Gene #1989: 'ZMIZ1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ZMIZ1 MUTATED 2 0 1
ZMIZ1 WILD-TYPE 49 83 76
'ZMIZ1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0682 (Fisher's exact test), Q value = 0.28

Table S20889.  Gene #1989: 'ZMIZ1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ZMIZ1 MUTATED 8 1 2 0
ZMIZ1 WILD-TYPE 170 182 99 20
'ZMIZ1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.819 (Fisher's exact test), Q value = 1

Table S20890.  Gene #1989: 'ZMIZ1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ZMIZ1 MUTATED 2 2 4
ZMIZ1 WILD-TYPE 85 78 96
'ZMIZ1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.192 (Fisher's exact test), Q value = 0.49

Table S20891.  Gene #1989: 'ZMIZ1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ZMIZ1 MUTATED 1 2 6
ZMIZ1 WILD-TYPE 88 158 132
'ZMIZ1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.165 (Fisher's exact test), Q value = 0.46

Table S20892.  Gene #1989: 'ZMIZ1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ZMIZ1 MUTATED 7 2 0
ZMIZ1 WILD-TYPE 175 131 72
'ZMIZ1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.271 (Fisher's exact test), Q value = 0.6

Table S20893.  Gene #1989: 'ZMIZ1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ZMIZ1 MUTATED 2 5 1 3
ZMIZ1 WILD-TYPE 110 91 91 183
'ZMIZ1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0127 (Fisher's exact test), Q value = 0.11

Table S20894.  Gene #1989: 'ZMIZ1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ZMIZ1 MUTATED 3 1 4 1 0 0 2
ZMIZ1 WILD-TYPE 57 49 45 39 63 125 97

Figure S5112.  Get High-res Image Gene #1989: 'ZMIZ1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ZMIZ1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.525 (Fisher's exact test), Q value = 0.85

Table S20895.  Gene #1989: 'ZMIZ1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ZMIZ1 MUTATED 5 1 2 3
ZMIZ1 WILD-TYPE 125 77 66 193
'ZMIZ1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0288 (Fisher's exact test), Q value = 0.17

Table S20896.  Gene #1989: 'ZMIZ1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ZMIZ1 MUTATED 1 1 0 0 5 1 3 0 0
ZMIZ1 WILD-TYPE 39 61 28 80 64 47 40 28 74

Figure S5113.  Get High-res Image Gene #1989: 'ZMIZ1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'NLRP8 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.187 (Fisher's exact test), Q value = 0.49

Table S20897.  Gene #1990: 'NLRP8 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
NLRP8 MUTATED 4 1 2 4
NLRP8 WILD-TYPE 42 57 62 39
'NLRP8 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0696 (Fisher's exact test), Q value = 0.28

Table S20898.  Gene #1990: 'NLRP8 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
NLRP8 MUTATED 6 2 3
NLRP8 WILD-TYPE 45 81 74
'NLRP8 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.178 (Fisher's exact test), Q value = 0.48

Table S20899.  Gene #1990: 'NLRP8 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
NLRP8 MUTATED 16 8 4 0
NLRP8 WILD-TYPE 162 175 97 20
'NLRP8 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.779 (Fisher's exact test), Q value = 1

Table S20900.  Gene #1990: 'NLRP8 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
NLRP8 MUTATED 7 4 6
NLRP8 WILD-TYPE 80 76 94
'NLRP8 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.183 (Fisher's exact test), Q value = 0.48

Table S20901.  Gene #1990: 'NLRP8 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
NLRP8 MUTATED 4 6 12
NLRP8 WILD-TYPE 85 154 126
'NLRP8 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.212 (Fisher's exact test), Q value = 0.52

Table S20902.  Gene #1990: 'NLRP8 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
NLRP8 MUTATED 14 4 4
NLRP8 WILD-TYPE 168 129 68
'NLRP8 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.84 (Fisher's exact test), Q value = 1

Table S20903.  Gene #1990: 'NLRP8 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
NLRP8 MUTATED 8 6 4 10
NLRP8 WILD-TYPE 104 90 88 176
'NLRP8 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.15 (Fisher's exact test), Q value = 0.43

Table S20904.  Gene #1990: 'NLRP8 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
NLRP8 MUTATED 3 0 4 4 5 4 8
NLRP8 WILD-TYPE 57 50 45 36 58 121 91
'NLRP8 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.758 (Fisher's exact test), Q value = 1

Table S20905.  Gene #1990: 'NLRP8 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
NLRP8 MUTATED 10 4 3 10
NLRP8 WILD-TYPE 120 74 65 186
'NLRP8 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.44 (Fisher's exact test), Q value = 0.77

Table S20906.  Gene #1990: 'NLRP8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
NLRP8 MUTATED 5 4 2 5 4 0 3 1 3
NLRP8 WILD-TYPE 35 58 26 75 65 48 40 27 71
'NLRP8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.553 (Fisher's exact test), Q value = 0.87

Table S20907.  Gene #1990: 'NLRP8 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
NLRP8 MUTATED 1 2 0 0
NLRP8 WILD-TYPE 32 29 27 19
'NLRP8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.315 (Fisher's exact test), Q value = 0.64

Table S20908.  Gene #1990: 'NLRP8 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
NLRP8 MUTATED 1 1 1 0
NLRP8 WILD-TYPE 53 9 23 22
'RALGAPB MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00723 (Fisher's exact test), Q value = 0.079

Table S20909.  Gene #1991: 'RALGAPB MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
RALGAPB MUTATED 4 0 0 2
RALGAPB WILD-TYPE 42 58 64 41

Figure S5114.  Get High-res Image Gene #1991: 'RALGAPB MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'RALGAPB MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0719 (Fisher's exact test), Q value = 0.29

Table S20910.  Gene #1991: 'RALGAPB MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
RALGAPB MUTATED 4 1 1
RALGAPB WILD-TYPE 47 82 76
'RALGAPB MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00017 (Fisher's exact test), Q value = 0.0075

Table S20911.  Gene #1991: 'RALGAPB MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
RALGAPB MUTATED 14 1 0 0
RALGAPB WILD-TYPE 164 182 101 20

Figure S5115.  Get High-res Image Gene #1991: 'RALGAPB MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'RALGAPB MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.435 (Fisher's exact test), Q value = 0.76

Table S20912.  Gene #1991: 'RALGAPB MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
RALGAPB MUTATED 3 1 5
RALGAPB WILD-TYPE 84 79 95
'RALGAPB MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0138 (Fisher's exact test), Q value = 0.12

Table S20913.  Gene #1991: 'RALGAPB MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
RALGAPB MUTATED 0 3 9
RALGAPB WILD-TYPE 89 157 129

Figure S5116.  Get High-res Image Gene #1991: 'RALGAPB MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'RALGAPB MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.461 (Fisher's exact test), Q value = 0.79

Table S20914.  Gene #1991: 'RALGAPB MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
RALGAPB MUTATED 8 3 1
RALGAPB WILD-TYPE 174 130 71
'RALGAPB MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.374 (Fisher's exact test), Q value = 0.7

Table S20915.  Gene #1991: 'RALGAPB MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
RALGAPB MUTATED 1 4 4 6
RALGAPB WILD-TYPE 111 92 88 180
'RALGAPB MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 2e-05 (Fisher's exact test), Q value = 0.0017

Table S20916.  Gene #1991: 'RALGAPB MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
RALGAPB MUTATED 1 0 8 1 0 0 5
RALGAPB WILD-TYPE 59 50 41 39 63 125 94

Figure S5117.  Get High-res Image Gene #1991: 'RALGAPB MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'RALGAPB MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.855 (Fisher's exact test), Q value = 1

Table S20917.  Gene #1991: 'RALGAPB MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
RALGAPB MUTATED 4 2 1 8
RALGAPB WILD-TYPE 126 76 67 188
'RALGAPB MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00068 (Fisher's exact test), Q value = 0.019

Table S20918.  Gene #1991: 'RALGAPB MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
RALGAPB MUTATED 0 2 1 0 8 0 2 2 0
RALGAPB WILD-TYPE 40 60 27 80 61 48 41 26 74

Figure S5118.  Get High-res Image Gene #1991: 'RALGAPB MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'RALGAPB MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0952 (Fisher's exact test), Q value = 0.34

Table S20919.  Gene #1991: 'RALGAPB MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
RALGAPB MUTATED 2 0 0 2
RALGAPB WILD-TYPE 31 31 27 17
'RALGAPB MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S20920.  Gene #1991: 'RALGAPB MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
RALGAPB MUTATED 2 0 1 1
RALGAPB WILD-TYPE 52 10 23 21
'DCLRE1C MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0146 (Fisher's exact test), Q value = 0.12

Table S20921.  Gene #1992: 'DCLRE1C MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
DCLRE1C MUTATED 10 2 0 0
DCLRE1C WILD-TYPE 168 181 101 20

Figure S5119.  Get High-res Image Gene #1992: 'DCLRE1C MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'DCLRE1C MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.583 (Fisher's exact test), Q value = 0.89

Table S20922.  Gene #1992: 'DCLRE1C MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
DCLRE1C MUTATED 2 2 5
DCLRE1C WILD-TYPE 85 78 95
'DCLRE1C MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.732 (Fisher's exact test), Q value = 1

Table S20923.  Gene #1992: 'DCLRE1C MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
DCLRE1C MUTATED 2 6 3
DCLRE1C WILD-TYPE 87 154 135
'DCLRE1C MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0645 (Fisher's exact test), Q value = 0.28

Table S20924.  Gene #1992: 'DCLRE1C MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
DCLRE1C MUTATED 2 7 2
DCLRE1C WILD-TYPE 180 126 70
'DCLRE1C MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.355 (Fisher's exact test), Q value = 0.68

Table S20925.  Gene #1992: 'DCLRE1C MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
DCLRE1C MUTATED 2 5 2 3
DCLRE1C WILD-TYPE 110 91 90 183
'DCLRE1C MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0332 (Fisher's exact test), Q value = 0.19

Table S20926.  Gene #1992: 'DCLRE1C MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
DCLRE1C MUTATED 2 1 4 0 1 0 4
DCLRE1C WILD-TYPE 58 49 45 40 62 125 95

Figure S5120.  Get High-res Image Gene #1992: 'DCLRE1C MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'DCLRE1C MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.952 (Fisher's exact test), Q value = 1

Table S20927.  Gene #1992: 'DCLRE1C MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
DCLRE1C MUTATED 4 2 1 5
DCLRE1C WILD-TYPE 126 76 67 191
'DCLRE1C MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.131 (Fisher's exact test), Q value = 0.4

Table S20928.  Gene #1992: 'DCLRE1C MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
DCLRE1C MUTATED 2 2 1 1 5 0 1 0 0
DCLRE1C WILD-TYPE 38 60 27 79 64 48 42 28 74
'SLC9A9 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00389 (Fisher's exact test), Q value = 0.057

Table S20929.  Gene #1993: 'SLC9A9 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
SLC9A9 MUTATED 5 0 1 5
SLC9A9 WILD-TYPE 41 58 63 38

Figure S5121.  Get High-res Image Gene #1993: 'SLC9A9 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'SLC9A9 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0171 (Fisher's exact test), Q value = 0.13

Table S20930.  Gene #1993: 'SLC9A9 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
SLC9A9 MUTATED 7 2 2
SLC9A9 WILD-TYPE 44 81 75

Figure S5122.  Get High-res Image Gene #1993: 'SLC9A9 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'SLC9A9 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0217 (Fisher's exact test), Q value = 0.15

Table S20931.  Gene #1993: 'SLC9A9 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
SLC9A9 MUTATED 15 6 1 1
SLC9A9 WILD-TYPE 163 177 100 19

Figure S5123.  Get High-res Image Gene #1993: 'SLC9A9 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'SLC9A9 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S20932.  Gene #1993: 'SLC9A9 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
SLC9A9 MUTATED 4 3 4
SLC9A9 WILD-TYPE 83 77 96
'SLC9A9 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.627 (Fisher's exact test), Q value = 0.92

Table S20933.  Gene #1993: 'SLC9A9 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
SLC9A9 MUTATED 2 8 7
SLC9A9 WILD-TYPE 87 152 131
'SLC9A9 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.057 (Fisher's exact test), Q value = 0.26

Table S20934.  Gene #1993: 'SLC9A9 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
SLC9A9 MUTATED 8 9 0
SLC9A9 WILD-TYPE 174 124 72
'SLC9A9 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.643 (Fisher's exact test), Q value = 0.93

Table S20935.  Gene #1993: 'SLC9A9 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
SLC9A9 MUTATED 4 3 4 12
SLC9A9 WILD-TYPE 108 93 88 174
'SLC9A9 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0491 (Fisher's exact test), Q value = 0.24

Table S20936.  Gene #1993: 'SLC9A9 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
SLC9A9 MUTATED 3 2 2 1 4 1 10
SLC9A9 WILD-TYPE 57 48 47 39 59 124 89

Figure S5124.  Get High-res Image Gene #1993: 'SLC9A9 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'SLC9A9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.22 (Fisher's exact test), Q value = 0.53

Table S20937.  Gene #1993: 'SLC9A9 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
SLC9A9 MUTATED 7 4 0 10
SLC9A9 WILD-TYPE 123 74 68 186
'SLC9A9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.202 (Fisher's exact test), Q value = 0.51

Table S20938.  Gene #1993: 'SLC9A9 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
SLC9A9 MUTATED 2 4 2 3 7 1 0 1 1
SLC9A9 WILD-TYPE 38 58 26 77 62 47 43 27 73
'C17ORF58 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.275 (Fisher's exact test), Q value = 0.6

Table S20939.  Gene #1994: 'C17ORF58 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
C17ORF58 MUTATED 3 0 0 0
C17ORF58 WILD-TYPE 175 183 101 20
'C17ORF58 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.777 (Fisher's exact test), Q value = 1

Table S20940.  Gene #1994: 'C17ORF58 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
C17ORF58 MUTATED 1 0 2
C17ORF58 WILD-TYPE 86 80 98
'C17ORF58 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0679 (Fisher's exact test), Q value = 0.28

Table S20941.  Gene #1994: 'C17ORF58 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
C17ORF58 MUTATED 0 2 1 0
C17ORF58 WILD-TYPE 112 94 91 186
'C17ORF58 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00144 (Fisher's exact test), Q value = 0.031

Table S20942.  Gene #1994: 'C17ORF58 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
C17ORF58 MUTATED 0 0 3 0 0 0 0
C17ORF58 WILD-TYPE 60 50 46 40 63 125 99

Figure S5125.  Get High-res Image Gene #1994: 'C17ORF58 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'C17ORF58 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.859 (Fisher's exact test), Q value = 1

Table S20943.  Gene #1994: 'C17ORF58 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
C17ORF58 MUTATED 1 1 0 1
C17ORF58 WILD-TYPE 129 77 68 195
'C17ORF58 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.672 (Fisher's exact test), Q value = 0.95

Table S20944.  Gene #1994: 'C17ORF58 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
C17ORF58 MUTATED 0 0 0 1 2 0 0 0 0
C17ORF58 WILD-TYPE 40 62 28 79 67 48 43 28 74
'GORASP1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0655 (Fisher's exact test), Q value = 0.28

Table S20945.  Gene #1995: 'GORASP1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
GORASP1 MUTATED 1 0 0 2
GORASP1 WILD-TYPE 45 58 64 41
'GORASP1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.185 (Fisher's exact test), Q value = 0.49

Table S20946.  Gene #1995: 'GORASP1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
GORASP1 MUTATED 2 0 1
GORASP1 WILD-TYPE 49 83 76
'GORASP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.032 (Fisher's exact test), Q value = 0.18

Table S20947.  Gene #1995: 'GORASP1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
GORASP1 MUTATED 9 1 1 0
GORASP1 WILD-TYPE 169 182 100 20

Figure S5126.  Get High-res Image Gene #1995: 'GORASP1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'GORASP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.605 (Fisher's exact test), Q value = 0.91

Table S20948.  Gene #1995: 'GORASP1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
GORASP1 MUTATED 3 1 4
GORASP1 WILD-TYPE 84 79 96
'GORASP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.117 (Fisher's exact test), Q value = 0.38

Table S20949.  Gene #1995: 'GORASP1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
GORASP1 MUTATED 0 4 6
GORASP1 WILD-TYPE 89 156 132
'GORASP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.442 (Fisher's exact test), Q value = 0.77

Table S20950.  Gene #1995: 'GORASP1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
GORASP1 MUTATED 7 2 1
GORASP1 WILD-TYPE 175 131 71
'GORASP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.343 (Fisher's exact test), Q value = 0.67

Table S20951.  Gene #1995: 'GORASP1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
GORASP1 MUTATED 2 2 4 2
GORASP1 WILD-TYPE 110 94 88 184
'GORASP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0103 (Fisher's exact test), Q value = 0.097

Table S20952.  Gene #1995: 'GORASP1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
GORASP1 MUTATED 3 0 4 0 1 0 2
GORASP1 WILD-TYPE 57 50 45 40 62 125 97

Figure S5127.  Get High-res Image Gene #1995: 'GORASP1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'GORASP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.88 (Fisher's exact test), Q value = 1

Table S20953.  Gene #1995: 'GORASP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
GORASP1 MUTATED 4 1 1 4
GORASP1 WILD-TYPE 126 77 67 192
'GORASP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.641 (Fisher's exact test), Q value = 0.93

Table S20954.  Gene #1995: 'GORASP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
GORASP1 MUTATED 1 2 0 1 4 0 1 0 1
GORASP1 WILD-TYPE 39 60 28 79 65 48 42 28 73
'GORASP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.137 (Fisher's exact test), Q value = 0.41

Table S20955.  Gene #1995: 'GORASP1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
GORASP1 MUTATED 1 0 0 2
GORASP1 WILD-TYPE 32 31 27 17
'GORASP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S20956.  Gene #1995: 'GORASP1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
GORASP1 MUTATED 2 0 1 0
GORASP1 WILD-TYPE 52 10 23 22
'RAD18 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.626 (Fisher's exact test), Q value = 0.92

Table S20957.  Gene #1996: 'RAD18 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
RAD18 MUTATED 1 1 0 1
RAD18 WILD-TYPE 45 57 64 42
'RAD18 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.789 (Fisher's exact test), Q value = 1

Table S20958.  Gene #1996: 'RAD18 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
RAD18 MUTATED 0 2 1
RAD18 WILD-TYPE 51 81 76
'RAD18 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0468 (Fisher's exact test), Q value = 0.23

Table S20959.  Gene #1996: 'RAD18 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
RAD18 MUTATED 11 2 2 0
RAD18 WILD-TYPE 167 181 99 20

Figure S5128.  Get High-res Image Gene #1996: 'RAD18 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'RAD18 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.829 (Fisher's exact test), Q value = 1

Table S20960.  Gene #1996: 'RAD18 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
RAD18 MUTATED 4 3 6
RAD18 WILD-TYPE 83 77 94
'RAD18 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.506 (Fisher's exact test), Q value = 0.83

Table S20961.  Gene #1996: 'RAD18 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
RAD18 MUTATED 2 4 7
RAD18 WILD-TYPE 87 156 131
'RAD18 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.932 (Fisher's exact test), Q value = 1

Table S20962.  Gene #1996: 'RAD18 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
RAD18 MUTATED 7 4 2
RAD18 WILD-TYPE 175 129 70
'RAD18 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0403 (Fisher's exact test), Q value = 0.21

Table S20963.  Gene #1996: 'RAD18 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
RAD18 MUTATED 3 7 3 2
RAD18 WILD-TYPE 109 89 89 184

Figure S5129.  Get High-res Image Gene #1996: 'RAD18 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'RAD18 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0039 (Fisher's exact test), Q value = 0.057

Table S20964.  Gene #1996: 'RAD18 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
RAD18 MUTATED 1 3 6 1 2 2 0
RAD18 WILD-TYPE 59 47 43 39 61 123 99

Figure S5130.  Get High-res Image Gene #1996: 'RAD18 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'RAD18 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.468 (Fisher's exact test), Q value = 0.79

Table S20965.  Gene #1996: 'RAD18 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
RAD18 MUTATED 7 2 1 5
RAD18 WILD-TYPE 123 76 67 191
'RAD18 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.193 (Fisher's exact test), Q value = 0.5

Table S20966.  Gene #1996: 'RAD18 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
RAD18 MUTATED 3 4 0 3 4 0 0 0 1
RAD18 WILD-TYPE 37 58 28 77 65 48 43 28 73
'RAD18 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.269 (Fisher's exact test), Q value = 0.59

Table S20967.  Gene #1996: 'RAD18 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
RAD18 MUTATED 1 0 1 2
RAD18 WILD-TYPE 32 31 26 17
'RAD18 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.669 (Fisher's exact test), Q value = 0.95

Table S20968.  Gene #1996: 'RAD18 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
RAD18 MUTATED 2 0 2 0
RAD18 WILD-TYPE 52 10 22 22
'ZCWPW2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.771 (Fisher's exact test), Q value = 1

Table S20969.  Gene #1997: 'ZCWPW2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ZCWPW2 MUTATED 1 2 1 2
ZCWPW2 WILD-TYPE 45 56 63 41
'ZCWPW2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S20970.  Gene #1997: 'ZCWPW2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ZCWPW2 MUTATED 1 3 2
ZCWPW2 WILD-TYPE 50 80 75
'ZCWPW2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.237 (Fisher's exact test), Q value = 0.56

Table S20971.  Gene #1997: 'ZCWPW2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ZCWPW2 MUTATED 9 4 1 0
ZCWPW2 WILD-TYPE 169 179 100 20
'ZCWPW2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.142 (Fisher's exact test), Q value = 0.42

Table S20972.  Gene #1997: 'ZCWPW2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ZCWPW2 MUTATED 4 0 4
ZCWPW2 WILD-TYPE 83 80 96
'ZCWPW2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.546 (Fisher's exact test), Q value = 0.86

Table S20973.  Gene #1997: 'ZCWPW2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ZCWPW2 MUTATED 4 6 3
ZCWPW2 WILD-TYPE 85 154 135
'ZCWPW2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.391 (Fisher's exact test), Q value = 0.72

Table S20974.  Gene #1997: 'ZCWPW2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ZCWPW2 MUTATED 4 5 4
ZCWPW2 WILD-TYPE 178 128 68
'ZCWPW2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.101 (Fisher's exact test), Q value = 0.35

Table S20975.  Gene #1997: 'ZCWPW2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ZCWPW2 MUTATED 1 6 1 6
ZCWPW2 WILD-TYPE 111 90 91 180
'ZCWPW2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.127 (Fisher's exact test), Q value = 0.4

Table S20976.  Gene #1997: 'ZCWPW2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ZCWPW2 MUTATED 2 4 3 0 0 3 2
ZCWPW2 WILD-TYPE 58 46 46 40 63 122 97
'ZCWPW2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.809 (Fisher's exact test), Q value = 1

Table S20977.  Gene #1997: 'ZCWPW2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ZCWPW2 MUTATED 5 1 2 6
ZCWPW2 WILD-TYPE 125 77 66 190
'ZCWPW2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.446 (Fisher's exact test), Q value = 0.77

Table S20978.  Gene #1997: 'ZCWPW2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ZCWPW2 MUTATED 2 1 2 3 4 0 1 0 1
ZCWPW2 WILD-TYPE 38 61 26 77 65 48 42 28 73
'ZCWPW2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.253 (Fisher's exact test), Q value = 0.58

Table S20979.  Gene #1997: 'ZCWPW2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
ZCWPW2 MUTATED 2 0 0 1
ZCWPW2 WILD-TYPE 31 31 27 18
'ZCWPW2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S20980.  Gene #1997: 'ZCWPW2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
ZCWPW2 MUTATED 2 0 1 0
ZCWPW2 WILD-TYPE 52 10 23 22
'OR5H1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.121 (Fisher's exact test), Q value = 0.39

Table S20981.  Gene #1998: 'OR5H1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
OR5H1 MUTATED 2 0 0 1
OR5H1 WILD-TYPE 44 58 64 42
'OR5H1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.251 (Fisher's exact test), Q value = 0.58

Table S20982.  Gene #1998: 'OR5H1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
OR5H1 MUTATED 2 1 0
OR5H1 WILD-TYPE 49 82 77
'OR5H1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.251 (Fisher's exact test), Q value = 0.58

Table S20983.  Gene #1998: 'OR5H1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
OR5H1 MUTATED 6 2 1 1
OR5H1 WILD-TYPE 172 181 100 19
'OR5H1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.233 (Fisher's exact test), Q value = 0.55

Table S20984.  Gene #1998: 'OR5H1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
OR5H1 MUTATED 1 1 5
OR5H1 WILD-TYPE 86 79 95
'OR5H1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.733 (Fisher's exact test), Q value = 1

Table S20985.  Gene #1998: 'OR5H1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
OR5H1 MUTATED 1 3 4
OR5H1 WILD-TYPE 88 157 134
'OR5H1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.565 (Fisher's exact test), Q value = 0.87

Table S20986.  Gene #1998: 'OR5H1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
OR5H1 MUTATED 5 3 0
OR5H1 WILD-TYPE 177 130 72
'OR5H1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.495 (Fisher's exact test), Q value = 0.82

Table S20987.  Gene #1998: 'OR5H1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
OR5H1 MUTATED 2 4 1 3
OR5H1 WILD-TYPE 110 92 91 183
'OR5H1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.479 (Fisher's exact test), Q value = 0.81

Table S20988.  Gene #1998: 'OR5H1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
OR5H1 MUTATED 1 1 3 1 1 1 2
OR5H1 WILD-TYPE 59 49 46 39 62 124 97
'OR5H1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0196 (Fisher's exact test), Q value = 0.14

Table S20989.  Gene #1998: 'OR5H1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
OR5H1 MUTATED 7 0 0 2
OR5H1 WILD-TYPE 123 78 68 194

Figure S5131.  Get High-res Image Gene #1998: 'OR5H1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'OR5H1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.325 (Fisher's exact test), Q value = 0.65

Table S20990.  Gene #1998: 'OR5H1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
OR5H1 MUTATED 1 0 1 2 3 0 1 1 0
OR5H1 WILD-TYPE 39 62 27 78 66 48 42 27 74
'OR5H1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0858 (Fisher's exact test), Q value = 0.32

Table S20991.  Gene #1998: 'OR5H1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
OR5H1 MUTATED 0 1 0 2
OR5H1 WILD-TYPE 33 30 27 17
'OR5H1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.448 (Fisher's exact test), Q value = 0.77

Table S20992.  Gene #1998: 'OR5H1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
OR5H1 MUTATED 1 0 2 0
OR5H1 WILD-TYPE 53 10 22 22
'MDM2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0985 (Fisher's exact test), Q value = 0.34

Table S20993.  Gene #1999: 'MDM2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
MDM2 MUTATED 6 1 1 1
MDM2 WILD-TYPE 172 182 100 19
'MDM2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S20994.  Gene #1999: 'MDM2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
MDM2 MUTATED 2 2 3
MDM2 WILD-TYPE 85 78 97
'MDM2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.26 (Fisher's exact test), Q value = 0.58

Table S20995.  Gene #1999: 'MDM2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
MDM2 MUTATED 0 5 4
MDM2 WILD-TYPE 89 155 134
'MDM2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.404 (Fisher's exact test), Q value = 0.73

Table S20996.  Gene #1999: 'MDM2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
MDM2 MUTATED 5 4 0
MDM2 WILD-TYPE 177 129 72
'MDM2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.367 (Fisher's exact test), Q value = 0.7

Table S20997.  Gene #1999: 'MDM2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
MDM2 MUTATED 2 4 1 2
MDM2 WILD-TYPE 110 92 91 184
'MDM2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.269 (Fisher's exact test), Q value = 0.59

Table S20998.  Gene #1999: 'MDM2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
MDM2 MUTATED 2 1 2 1 1 0 2
MDM2 WILD-TYPE 58 49 47 39 62 125 97
'MDM2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.591 (Fisher's exact test), Q value = 0.9

Table S20999.  Gene #1999: 'MDM2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
MDM2 MUTATED 3 1 2 2
MDM2 WILD-TYPE 127 77 66 194
'MDM2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.152 (Fisher's exact test), Q value = 0.44

Table S21000.  Gene #1999: 'MDM2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
MDM2 MUTATED 0 2 2 1 1 0 2 0 0
MDM2 WILD-TYPE 40 60 26 79 68 48 41 28 74
'ROR1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0268 (Fisher's exact test), Q value = 0.17

Table S21001.  Gene #2000: 'ROR1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ROR1 MUTATED 3 1 0 4
ROR1 WILD-TYPE 43 57 64 39

Figure S5132.  Get High-res Image Gene #2000: 'ROR1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'ROR1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.199 (Fisher's exact test), Q value = 0.5

Table S21002.  Gene #2000: 'ROR1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ROR1 MUTATED 2 1 5
ROR1 WILD-TYPE 49 82 72
'ROR1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0444 (Fisher's exact test), Q value = 0.22

Table S21003.  Gene #2000: 'ROR1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ROR1 MUTATED 15 4 4 0
ROR1 WILD-TYPE 163 179 97 20

Figure S5133.  Get High-res Image Gene #2000: 'ROR1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ROR1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.7 (Fisher's exact test), Q value = 0.97

Table S21004.  Gene #2000: 'ROR1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ROR1 MUTATED 6 3 5
ROR1 WILD-TYPE 81 77 95
'ROR1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0404 (Fisher's exact test), Q value = 0.21

Table S21005.  Gene #2000: 'ROR1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ROR1 MUTATED 1 5 11
ROR1 WILD-TYPE 88 155 127

Figure S5134.  Get High-res Image Gene #2000: 'ROR1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'ROR1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.675 (Fisher's exact test), Q value = 0.96

Table S21006.  Gene #2000: 'ROR1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ROR1 MUTATED 10 5 2
ROR1 WILD-TYPE 172 128 70
'ROR1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.655 (Fisher's exact test), Q value = 0.94

Table S21007.  Gene #2000: 'ROR1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ROR1 MUTATED 4 7 4 8
ROR1 WILD-TYPE 108 89 88 178
'ROR1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.101 (Fisher's exact test), Q value = 0.35

Table S21008.  Gene #2000: 'ROR1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ROR1 MUTATED 2 5 5 3 1 3 4
ROR1 WILD-TYPE 58 45 44 37 62 122 95
'ROR1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.524 (Fisher's exact test), Q value = 0.85

Table S21009.  Gene #2000: 'ROR1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ROR1 MUTATED 8 3 1 10
ROR1 WILD-TYPE 122 75 67 186
'ROR1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0521 (Fisher's exact test), Q value = 0.25

Table S21010.  Gene #2000: 'ROR1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ROR1 MUTATED 2 4 3 2 8 0 1 0 2
ROR1 WILD-TYPE 38 58 25 78 61 48 42 28 72
'BATF MUTATION STATUS' versus 'CN_CNMF'

P value = 0.666 (Fisher's exact test), Q value = 0.95

Table S21011.  Gene #2001: 'BATF MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
BATF MUTATED 2 1 0 0
BATF WILD-TYPE 176 182 101 20
'BATF MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.794 (Fisher's exact test), Q value = 1

Table S21012.  Gene #2001: 'BATF MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
BATF MUTATED 1 0 1 1
BATF WILD-TYPE 111 96 91 185
'BATF MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.15 (Fisher's exact test), Q value = 0.43

Table S21013.  Gene #2001: 'BATF MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
BATF MUTATED 1 1 1 0 0 0 0
BATF WILD-TYPE 59 49 48 40 63 125 99
'BATF MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.318 (Fisher's exact test), Q value = 0.65

Table S21014.  Gene #2001: 'BATF MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
BATF MUTATED 0 1 1 1
BATF WILD-TYPE 130 77 67 195
'BATF MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.65 (Fisher's exact test), Q value = 0.94

Table S21015.  Gene #2001: 'BATF MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
BATF MUTATED 0 1 0 0 1 0 1 0 0
BATF WILD-TYPE 40 61 28 80 68 48 42 28 74
'RNASE2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0443 (Fisher's exact test), Q value = 0.22

Table S21016.  Gene #2002: 'RNASE2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
RNASE2 MUTATED 5 0 0 0
RNASE2 WILD-TYPE 173 183 101 20

Figure S5135.  Get High-res Image Gene #2002: 'RNASE2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'RNASE2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.513 (Fisher's exact test), Q value = 0.83

Table S21017.  Gene #2002: 'RNASE2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
RNASE2 MUTATED 2 0 1
RNASE2 WILD-TYPE 85 80 99
'RNASE2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.685 (Fisher's exact test), Q value = 0.96

Table S21018.  Gene #2002: 'RNASE2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
RNASE2 MUTATED 0 2 2
RNASE2 WILD-TYPE 89 158 136
'RNASE2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.828 (Fisher's exact test), Q value = 1

Table S21019.  Gene #2002: 'RNASE2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
RNASE2 MUTATED 2 2 0
RNASE2 WILD-TYPE 180 131 72
'RNASE2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.687 (Fisher's exact test), Q value = 0.97

Table S21020.  Gene #2002: 'RNASE2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
RNASE2 MUTATED 0 1 1 3
RNASE2 WILD-TYPE 112 95 91 183
'RNASE2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.298 (Fisher's exact test), Q value = 0.63

Table S21021.  Gene #2002: 'RNASE2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
RNASE2 MUTATED 1 0 1 1 0 0 2
RNASE2 WILD-TYPE 59 50 48 39 63 125 97
'RNASE2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S21022.  Gene #2002: 'RNASE2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
RNASE2 MUTATED 1 1 0 2
RNASE2 WILD-TYPE 129 77 68 194
'RNASE2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.929 (Fisher's exact test), Q value = 1

Table S21023.  Gene #2002: 'RNASE2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
RNASE2 MUTATED 0 1 0 0 1 1 0 0 1
RNASE2 WILD-TYPE 40 61 28 80 68 47 43 28 73
'TRIO MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0103 (Fisher's exact test), Q value = 0.097

Table S21024.  Gene #2003: 'TRIO MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
TRIO MUTATED 2 0 2 6
TRIO WILD-TYPE 44 58 62 37

Figure S5136.  Get High-res Image Gene #2003: 'TRIO MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'TRIO MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.185 (Fisher's exact test), Q value = 0.49

Table S21025.  Gene #2003: 'TRIO MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
TRIO MUTATED 5 2 3
TRIO WILD-TYPE 46 81 74
'TRIO MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00075 (Fisher's exact test), Q value = 0.02

Table S21026.  Gene #2003: 'TRIO MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
TRIO MUTATED 23 5 4 0
TRIO WILD-TYPE 155 178 97 20

Figure S5137.  Get High-res Image Gene #2003: 'TRIO MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'TRIO MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0701 (Fisher's exact test), Q value = 0.29

Table S21027.  Gene #2003: 'TRIO MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
TRIO MUTATED 10 2 9
TRIO WILD-TYPE 77 78 91
'TRIO MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.219 (Fisher's exact test), Q value = 0.53

Table S21028.  Gene #2003: 'TRIO MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
TRIO MUTATED 4 11 15
TRIO WILD-TYPE 85 149 123
'TRIO MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.327 (Fisher's exact test), Q value = 0.66

Table S21029.  Gene #2003: 'TRIO MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
TRIO MUTATED 11 14 5
TRIO WILD-TYPE 171 119 67
'TRIO MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0781 (Fisher's exact test), Q value = 0.3

Table S21030.  Gene #2003: 'TRIO MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
TRIO MUTATED 4 11 8 9
TRIO WILD-TYPE 108 85 84 177
'TRIO MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00281 (Fisher's exact test), Q value = 0.047

Table S21031.  Gene #2003: 'TRIO MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
TRIO MUTATED 2 5 9 1 4 2 9
TRIO WILD-TYPE 58 45 40 39 59 123 90

Figure S5138.  Get High-res Image Gene #2003: 'TRIO MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'TRIO MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.802 (Fisher's exact test), Q value = 1

Table S21032.  Gene #2003: 'TRIO MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
TRIO MUTATED 11 4 4 12
TRIO WILD-TYPE 119 74 64 184
'TRIO MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00643 (Fisher's exact test), Q value = 0.074

Table S21033.  Gene #2003: 'TRIO MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
TRIO MUTATED 1 4 2 1 13 1 3 2 4
TRIO WILD-TYPE 39 58 26 79 56 47 40 26 70

Figure S5139.  Get High-res Image Gene #2003: 'TRIO MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'TRIO MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.233 (Fisher's exact test), Q value = 0.55

Table S21034.  Gene #2003: 'TRIO MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
TRIO MUTATED 2 2 1 4
TRIO WILD-TYPE 31 29 26 15
'TRIO MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.649 (Fisher's exact test), Q value = 0.94

Table S21035.  Gene #2003: 'TRIO MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
TRIO MUTATED 4 0 2 3
TRIO WILD-TYPE 50 10 22 19
'CTSL1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0643 (Fisher's exact test), Q value = 0.28

Table S21036.  Gene #2004: 'CTSL1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
CTSL1 MUTATED 1 0 0 2
CTSL1 WILD-TYPE 45 58 64 41
'CTSL1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.184 (Fisher's exact test), Q value = 0.48

Table S21037.  Gene #2004: 'CTSL1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
CTSL1 MUTATED 2 0 1
CTSL1 WILD-TYPE 49 83 76
'CTSL1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.207 (Fisher's exact test), Q value = 0.51

Table S21038.  Gene #2004: 'CTSL1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
CTSL1 MUTATED 6 1 1 0
CTSL1 WILD-TYPE 172 182 100 20
'CTSL1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S21039.  Gene #2004: 'CTSL1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
CTSL1 MUTATED 2 1 2
CTSL1 WILD-TYPE 85 79 98
'CTSL1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.876 (Fisher's exact test), Q value = 1

Table S21040.  Gene #2004: 'CTSL1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
CTSL1 MUTATED 1 2 3
CTSL1 WILD-TYPE 88 158 135
'CTSL1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S21041.  Gene #2004: 'CTSL1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
CTSL1 MUTATED 3 2 1
CTSL1 WILD-TYPE 179 131 71
'CTSL1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.859 (Fisher's exact test), Q value = 1

Table S21042.  Gene #2004: 'CTSL1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
CTSL1 MUTATED 1 2 2 3
CTSL1 WILD-TYPE 111 94 90 183
'CTSL1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0478 (Fisher's exact test), Q value = 0.23

Table S21043.  Gene #2004: 'CTSL1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
CTSL1 MUTATED 3 0 2 1 0 0 2
CTSL1 WILD-TYPE 57 50 47 39 63 125 97

Figure S5140.  Get High-res Image Gene #2004: 'CTSL1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CTSL1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S21044.  Gene #2004: 'CTSL1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
CTSL1 MUTATED 2 1 1 3
CTSL1 WILD-TYPE 128 77 67 193
'CTSL1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.138 (Fisher's exact test), Q value = 0.41

Table S21045.  Gene #2004: 'CTSL1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
CTSL1 MUTATED 0 0 1 1 3 0 2 0 0
CTSL1 WILD-TYPE 40 62 27 79 66 48 41 28 74
'KIF5B MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.132 (Fisher's exact test), Q value = 0.41

Table S21046.  Gene #2005: 'KIF5B MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
KIF5B MUTATED 1 0 1 3
KIF5B WILD-TYPE 45 58 63 40
'KIF5B MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.045 (Fisher's exact test), Q value = 0.23

Table S21047.  Gene #2005: 'KIF5B MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
KIF5B MUTATED 3 0 2
KIF5B WILD-TYPE 48 83 75

Figure S5141.  Get High-res Image Gene #2005: 'KIF5B MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'KIF5B MUTATION STATUS' versus 'CN_CNMF'

P value = 4e-04 (Fisher's exact test), Q value = 0.013

Table S21048.  Gene #2005: 'KIF5B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
KIF5B MUTATED 15 1 1 0
KIF5B WILD-TYPE 163 182 100 20

Figure S5142.  Get High-res Image Gene #2005: 'KIF5B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'KIF5B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.929 (Fisher's exact test), Q value = 1

Table S21049.  Gene #2005: 'KIF5B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
KIF5B MUTATED 3 4 4
KIF5B WILD-TYPE 84 76 96
'KIF5B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.939 (Fisher's exact test), Q value = 1

Table S21050.  Gene #2005: 'KIF5B MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
KIF5B MUTATED 3 5 6
KIF5B WILD-TYPE 86 155 132
'KIF5B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.938 (Fisher's exact test), Q value = 1

Table S21051.  Gene #2005: 'KIF5B MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
KIF5B MUTATED 6 5 3
KIF5B WILD-TYPE 176 128 69
'KIF5B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.985 (Fisher's exact test), Q value = 1

Table S21052.  Gene #2005: 'KIF5B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
KIF5B MUTATED 4 4 3 6
KIF5B WILD-TYPE 108 92 89 180
'KIF5B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00993 (Fisher's exact test), Q value = 0.095

Table S21053.  Gene #2005: 'KIF5B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
KIF5B MUTATED 4 1 6 0 1 1 4
KIF5B WILD-TYPE 56 49 43 40 62 124 95

Figure S5143.  Get High-res Image Gene #2005: 'KIF5B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'KIF5B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.478 (Fisher's exact test), Q value = 0.81

Table S21054.  Gene #2005: 'KIF5B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
KIF5B MUTATED 6 4 1 5
KIF5B WILD-TYPE 124 74 67 191
'KIF5B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0303 (Fisher's exact test), Q value = 0.18

Table S21055.  Gene #2005: 'KIF5B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
KIF5B MUTATED 1 4 0 1 7 1 2 0 0
KIF5B WILD-TYPE 39 58 28 79 62 47 41 28 74

Figure S5144.  Get High-res Image Gene #2005: 'KIF5B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'KIF5B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0954 (Fisher's exact test), Q value = 0.34

Table S21056.  Gene #2005: 'KIF5B MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
KIF5B MUTATED 2 0 0 2
KIF5B WILD-TYPE 31 31 27 17
'KIF5B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.87 (Fisher's exact test), Q value = 1

Table S21057.  Gene #2005: 'KIF5B MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
KIF5B MUTATED 3 0 1 0
KIF5B WILD-TYPE 51 10 23 22
'TMEM41B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.384 (Fisher's exact test), Q value = 0.71

Table S21058.  Gene #2006: 'TMEM41B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
TMEM41B MUTATED 4 1 0 0
TMEM41B WILD-TYPE 174 182 101 20
'TMEM41B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.516 (Fisher's exact test), Q value = 0.84

Table S21059.  Gene #2006: 'TMEM41B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
TMEM41B MUTATED 2 0 1
TMEM41B WILD-TYPE 85 80 99
'TMEM41B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.684 (Fisher's exact test), Q value = 0.96

Table S21060.  Gene #2006: 'TMEM41B MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
TMEM41B MUTATED 0 2 2
TMEM41B WILD-TYPE 89 158 136
'TMEM41B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.671 (Fisher's exact test), Q value = 0.95

Table S21061.  Gene #2006: 'TMEM41B MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
TMEM41B MUTATED 3 1 0
TMEM41B WILD-TYPE 179 132 72
'TMEM41B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S21062.  Gene #2006: 'TMEM41B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
TMEM41B MUTATED 1 1 1 2
TMEM41B WILD-TYPE 111 95 91 184
'TMEM41B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.485 (Fisher's exact test), Q value = 0.81

Table S21063.  Gene #2006: 'TMEM41B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
TMEM41B MUTATED 1 1 1 0 1 0 1
TMEM41B WILD-TYPE 59 49 48 40 62 125 98
'TMEM41B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.507 (Fisher's exact test), Q value = 0.83

Table S21064.  Gene #2006: 'TMEM41B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
TMEM41B MUTATED 3 0 0 2
TMEM41B WILD-TYPE 127 78 68 194
'TMEM41B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.802 (Fisher's exact test), Q value = 1

Table S21065.  Gene #2006: 'TMEM41B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
TMEM41B MUTATED 1 1 0 1 2 0 0 0 0
TMEM41B WILD-TYPE 39 61 28 79 67 48 43 28 74
'NUDT16L1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.278 (Fisher's exact test), Q value = 0.6

Table S21066.  Gene #2007: 'NUDT16L1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
NUDT16L1 MUTATED 3 0 0 0
NUDT16L1 WILD-TYPE 175 183 101 20
'NUDT16L1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.793 (Fisher's exact test), Q value = 1

Table S21067.  Gene #2007: 'NUDT16L1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
NUDT16L1 MUTATED 0 2 1
NUDT16L1 WILD-TYPE 89 158 137
'NUDT16L1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.589 (Fisher's exact test), Q value = 0.89

Table S21068.  Gene #2007: 'NUDT16L1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
NUDT16L1 MUTATED 1 2 0
NUDT16L1 WILD-TYPE 181 131 72
'NUDT16L1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.606 (Fisher's exact test), Q value = 0.91

Table S21069.  Gene #2007: 'NUDT16L1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
NUDT16L1 MUTATED 0 1 1 1
NUDT16L1 WILD-TYPE 112 95 91 185
'NUDT16L1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.312 (Fisher's exact test), Q value = 0.64

Table S21070.  Gene #2007: 'NUDT16L1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
NUDT16L1 MUTATED 0 1 1 0 0 0 1
NUDT16L1 WILD-TYPE 60 49 48 40 63 125 98
'NUDT16L1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.86 (Fisher's exact test), Q value = 1

Table S21071.  Gene #2007: 'NUDT16L1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
NUDT16L1 MUTATED 1 1 0 1
NUDT16L1 WILD-TYPE 129 77 68 195
'NUDT16L1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.62 (Fisher's exact test), Q value = 0.92

Table S21072.  Gene #2007: 'NUDT16L1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
NUDT16L1 MUTATED 1 1 0 0 1 0 0 0 0
NUDT16L1 WILD-TYPE 39 61 28 80 68 48 43 28 74
'SEMA3A MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0304 (Fisher's exact test), Q value = 0.18

Table S21073.  Gene #2008: 'SEMA3A MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
SEMA3A MUTATED 1 1 0 4
SEMA3A WILD-TYPE 45 57 64 39

Figure S5145.  Get High-res Image Gene #2008: 'SEMA3A MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'SEMA3A MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.335 (Fisher's exact test), Q value = 0.66

Table S21074.  Gene #2008: 'SEMA3A MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
SEMA3A MUTATED 3 2 1
SEMA3A WILD-TYPE 48 81 76
'SEMA3A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0131 (Fisher's exact test), Q value = 0.11

Table S21075.  Gene #2008: 'SEMA3A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
SEMA3A MUTATED 12 4 0 0
SEMA3A WILD-TYPE 166 179 101 20

Figure S5146.  Get High-res Image Gene #2008: 'SEMA3A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'SEMA3A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.557 (Fisher's exact test), Q value = 0.87

Table S21076.  Gene #2008: 'SEMA3A MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
SEMA3A MUTATED 5 2 3
SEMA3A WILD-TYPE 82 78 97
'SEMA3A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.209 (Fisher's exact test), Q value = 0.52

Table S21077.  Gene #2008: 'SEMA3A MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
SEMA3A MUTATED 1 6 8
SEMA3A WILD-TYPE 88 154 130
'SEMA3A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.147 (Fisher's exact test), Q value = 0.43

Table S21078.  Gene #2008: 'SEMA3A MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
SEMA3A MUTATED 8 7 0
SEMA3A WILD-TYPE 174 126 72
'SEMA3A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.229 (Fisher's exact test), Q value = 0.55

Table S21079.  Gene #2008: 'SEMA3A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
SEMA3A MUTATED 3 1 6 6
SEMA3A WILD-TYPE 109 95 86 180
'SEMA3A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0236 (Fisher's exact test), Q value = 0.16

Table S21080.  Gene #2008: 'SEMA3A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
SEMA3A MUTATED 3 0 5 0 2 1 5
SEMA3A WILD-TYPE 57 50 44 40 61 124 94

Figure S5147.  Get High-res Image Gene #2008: 'SEMA3A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'SEMA3A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.98 (Fisher's exact test), Q value = 1

Table S21081.  Gene #2008: 'SEMA3A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
SEMA3A MUTATED 4 3 2 6
SEMA3A WILD-TYPE 126 75 66 190
'SEMA3A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0458 (Fisher's exact test), Q value = 0.23

Table S21082.  Gene #2008: 'SEMA3A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
SEMA3A MUTATED 0 5 1 1 6 1 0 0 1
SEMA3A WILD-TYPE 40 57 27 79 63 47 43 28 73

Figure S5148.  Get High-res Image Gene #2008: 'SEMA3A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'SEMA3A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.393 (Fisher's exact test), Q value = 0.72

Table S21083.  Gene #2008: 'SEMA3A MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
SEMA3A MUTATED 2 1 0 2
SEMA3A WILD-TYPE 31 30 27 17
'SEMA3A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S21084.  Gene #2008: 'SEMA3A MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
SEMA3A MUTATED 3 0 1 1
SEMA3A WILD-TYPE 51 10 23 21
'PCDHGA4 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0734 (Fisher's exact test), Q value = 0.29

Table S21085.  Gene #2009: 'PCDHGA4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
PCDHGA4 MUTATED 2 0 0 2
PCDHGA4 WILD-TYPE 44 58 64 41
'PCDHGA4 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00303 (Fisher's exact test), Q value = 0.049

Table S21086.  Gene #2009: 'PCDHGA4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
PCDHGA4 MUTATED 4 0 0
PCDHGA4 WILD-TYPE 47 83 77

Figure S5149.  Get High-res Image Gene #2009: 'PCDHGA4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'PCDHGA4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00317 (Fisher's exact test), Q value = 0.05

Table S21087.  Gene #2009: 'PCDHGA4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
PCDHGA4 MUTATED 15 2 2 0
PCDHGA4 WILD-TYPE 163 181 99 20

Figure S5150.  Get High-res Image Gene #2009: 'PCDHGA4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'PCDHGA4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.45 (Fisher's exact test), Q value = 0.78

Table S21088.  Gene #2009: 'PCDHGA4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
PCDHGA4 MUTATED 6 2 6
PCDHGA4 WILD-TYPE 81 78 94
'PCDHGA4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00974 (Fisher's exact test), Q value = 0.094

Table S21089.  Gene #2009: 'PCDHGA4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
PCDHGA4 MUTATED 7 2 10
PCDHGA4 WILD-TYPE 82 158 128

Figure S5151.  Get High-res Image Gene #2009: 'PCDHGA4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'PCDHGA4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0413 (Fisher's exact test), Q value = 0.21

Table S21090.  Gene #2009: 'PCDHGA4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
PCDHGA4 MUTATED 7 4 8
PCDHGA4 WILD-TYPE 175 129 64

Figure S5152.  Get High-res Image Gene #2009: 'PCDHGA4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'PCDHGA4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.139 (Fisher's exact test), Q value = 0.42

Table S21091.  Gene #2009: 'PCDHGA4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
PCDHGA4 MUTATED 2 7 5 5
PCDHGA4 WILD-TYPE 110 89 87 181
'PCDHGA4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00126 (Fisher's exact test), Q value = 0.029

Table S21092.  Gene #2009: 'PCDHGA4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
PCDHGA4 MUTATED 0 2 6 2 4 0 5
PCDHGA4 WILD-TYPE 60 48 43 38 59 125 94

Figure S5153.  Get High-res Image Gene #2009: 'PCDHGA4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'PCDHGA4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.506 (Fisher's exact test), Q value = 0.83

Table S21093.  Gene #2009: 'PCDHGA4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
PCDHGA4 MUTATED 5 5 1 7
PCDHGA4 WILD-TYPE 125 73 67 189
'PCDHGA4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00388 (Fisher's exact test), Q value = 0.057

Table S21094.  Gene #2009: 'PCDHGA4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
PCDHGA4 MUTATED 3 4 1 0 8 0 1 0 1
PCDHGA4 WILD-TYPE 37 58 27 80 61 48 42 28 73

Figure S5154.  Get High-res Image Gene #2009: 'PCDHGA4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'PCDHGA4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0245 (Fisher's exact test), Q value = 0.16

Table S21095.  Gene #2009: 'PCDHGA4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
PCDHGA4 MUTATED 3 0 0 3
PCDHGA4 WILD-TYPE 30 31 27 16

Figure S5155.  Get High-res Image Gene #2009: 'PCDHGA4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'PCDHGA4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S21096.  Gene #2009: 'PCDHGA4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
PCDHGA4 MUTATED 4 0 1 1
PCDHGA4 WILD-TYPE 50 10 23 21
'SNX33 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.89 (Fisher's exact test), Q value = 1

Table S21097.  Gene #2010: 'SNX33 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
SNX33 MUTATED 0 1 1 1
SNX33 WILD-TYPE 46 57 63 42
'SNX33 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.122 (Fisher's exact test), Q value = 0.39

Table S21098.  Gene #2010: 'SNX33 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
SNX33 MUTATED 0 3 0
SNX33 WILD-TYPE 51 80 77
'SNX33 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0717 (Fisher's exact test), Q value = 0.29

Table S21099.  Gene #2010: 'SNX33 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
SNX33 MUTATED 7 3 0 1
SNX33 WILD-TYPE 171 180 101 19
'SNX33 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.205 (Fisher's exact test), Q value = 0.51

Table S21100.  Gene #2010: 'SNX33 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
SNX33 MUTATED 3 0 4
SNX33 WILD-TYPE 84 80 96
'SNX33 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.155 (Fisher's exact test), Q value = 0.44

Table S21101.  Gene #2010: 'SNX33 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
SNX33 MUTATED 4 4 1
SNX33 WILD-TYPE 85 156 137
'SNX33 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.67 (Fisher's exact test), Q value = 0.95

Table S21102.  Gene #2010: 'SNX33 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
SNX33 MUTATED 3 4 2
SNX33 WILD-TYPE 179 129 70
'SNX33 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.159 (Fisher's exact test), Q value = 0.45

Table S21103.  Gene #2010: 'SNX33 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
SNX33 MUTATED 0 2 4 5
SNX33 WILD-TYPE 112 94 88 181
'SNX33 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.14 (Fisher's exact test), Q value = 0.42

Table S21104.  Gene #2010: 'SNX33 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
SNX33 MUTATED 0 0 4 1 1 2 3
SNX33 WILD-TYPE 60 50 45 39 62 123 96
'SNX33 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.871 (Fisher's exact test), Q value = 1

Table S21105.  Gene #2010: 'SNX33 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
SNX33 MUTATED 4 1 1 5
SNX33 WILD-TYPE 126 77 67 191
'SNX33 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.696 (Fisher's exact test), Q value = 0.97

Table S21106.  Gene #2010: 'SNX33 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
SNX33 MUTATED 0 1 1 2 4 0 1 0 2
SNX33 WILD-TYPE 40 61 27 78 65 48 42 28 72
'SNX33 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0871 (Fisher's exact test), Q value = 0.32

Table S21107.  Gene #2010: 'SNX33 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
SNX33 MUTATED 1 1 0 3
SNX33 WILD-TYPE 32 30 27 16
'SNX33 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S21108.  Gene #2010: 'SNX33 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
SNX33 MUTATED 3 0 1 1
SNX33 WILD-TYPE 51 10 23 21
'BATF3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.121 (Fisher's exact test), Q value = 0.39

Table S21109.  Gene #2011: 'BATF3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
BATF3 MUTATED 4 0 0 0
BATF3 WILD-TYPE 174 183 101 20
'BATF3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.512 (Fisher's exact test), Q value = 0.83

Table S21110.  Gene #2011: 'BATF3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
BATF3 MUTATED 2 0 1
BATF3 WILD-TYPE 85 80 99
'BATF3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.83 (Fisher's exact test), Q value = 1

Table S21111.  Gene #2011: 'BATF3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
BATF3 MUTATED 1 1 2
BATF3 WILD-TYPE 88 159 136
'BATF3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.828 (Fisher's exact test), Q value = 1

Table S21112.  Gene #2011: 'BATF3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
BATF3 MUTATED 2 2 0
BATF3 WILD-TYPE 180 131 72
'BATF3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.305 (Fisher's exact test), Q value = 0.63

Table S21113.  Gene #2011: 'BATF3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
BATF3 MUTATED 0 2 1 1
BATF3 WILD-TYPE 112 94 91 185
'BATF3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.102 (Fisher's exact test), Q value = 0.35

Table S21114.  Gene #2011: 'BATF3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
BATF3 MUTATED 0 1 2 0 0 0 1
BATF3 WILD-TYPE 60 49 47 40 63 125 98
'BATF3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S21115.  Gene #2011: 'BATF3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
BATF3 MUTATED 1 1 0 2
BATF3 WILD-TYPE 129 77 68 194
'BATF3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.349 (Fisher's exact test), Q value = 0.68

Table S21116.  Gene #2011: 'BATF3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
BATF3 MUTATED 0 0 0 0 2 0 0 1 1
BATF3 WILD-TYPE 40 62 28 80 67 48 43 27 73
'KBTBD8 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0657 (Fisher's exact test), Q value = 0.28

Table S21117.  Gene #2012: 'KBTBD8 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
KBTBD8 MUTATED 1 0 0 2
KBTBD8 WILD-TYPE 45 58 64 41
'KBTBD8 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S21118.  Gene #2012: 'KBTBD8 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
KBTBD8 MUTATED 1 1 1
KBTBD8 WILD-TYPE 50 82 76
'KBTBD8 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0394 (Fisher's exact test), Q value = 0.21

Table S21119.  Gene #2012: 'KBTBD8 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
KBTBD8 MUTATED 6 1 0 1
KBTBD8 WILD-TYPE 172 182 101 19

Figure S5156.  Get High-res Image Gene #2012: 'KBTBD8 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'KBTBD8 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.327 (Fisher's exact test), Q value = 0.66

Table S21120.  Gene #2012: 'KBTBD8 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
KBTBD8 MUTATED 3 0 2
KBTBD8 WILD-TYPE 84 80 98
'KBTBD8 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S21121.  Gene #2012: 'KBTBD8 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
KBTBD8 MUTATED 1 3 2
KBTBD8 WILD-TYPE 88 157 136
'KBTBD8 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.666 (Fisher's exact test), Q value = 0.95

Table S21122.  Gene #2012: 'KBTBD8 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
KBTBD8 MUTATED 4 2 0
KBTBD8 WILD-TYPE 178 131 72
'KBTBD8 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.888 (Fisher's exact test), Q value = 1

Table S21123.  Gene #2012: 'KBTBD8 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
KBTBD8 MUTATED 1 2 1 4
KBTBD8 WILD-TYPE 111 94 91 182
'KBTBD8 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.201 (Fisher's exact test), Q value = 0.51

Table S21124.  Gene #2012: 'KBTBD8 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
KBTBD8 MUTATED 1 0 3 1 0 1 2
KBTBD8 WILD-TYPE 59 50 46 39 63 124 97
'KBTBD8 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.825 (Fisher's exact test), Q value = 1

Table S21125.  Gene #2012: 'KBTBD8 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
KBTBD8 MUTATED 3 1 0 3
KBTBD8 WILD-TYPE 127 77 68 193
'KBTBD8 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.187 (Fisher's exact test), Q value = 0.49

Table S21126.  Gene #2012: 'KBTBD8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
KBTBD8 MUTATED 3 0 0 1 2 0 0 0 1
KBTBD8 WILD-TYPE 37 62 28 79 67 48 43 28 73
'RHBDD1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.481 (Fisher's exact test), Q value = 0.81

Table S21127.  Gene #2013: 'RHBDD1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
RHBDD1 MUTATED 1 2 0 1
RHBDD1 WILD-TYPE 45 56 64 42
'RHBDD1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.833 (Fisher's exact test), Q value = 1

Table S21128.  Gene #2013: 'RHBDD1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
RHBDD1 MUTATED 1 1 2
RHBDD1 WILD-TYPE 50 82 75
'RHBDD1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.113 (Fisher's exact test), Q value = 0.37

Table S21129.  Gene #2013: 'RHBDD1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
RHBDD1 MUTATED 5 2 0 1
RHBDD1 WILD-TYPE 173 181 101 19
'RHBDD1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.529 (Fisher's exact test), Q value = 0.85

Table S21130.  Gene #2013: 'RHBDD1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
RHBDD1 MUTATED 3 1 1
RHBDD1 WILD-TYPE 84 79 99
'RHBDD1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.123 (Fisher's exact test), Q value = 0.39

Table S21131.  Gene #2013: 'RHBDD1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
RHBDD1 MUTATED 4 2 1
RHBDD1 WILD-TYPE 85 158 137
'RHBDD1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S21132.  Gene #2013: 'RHBDD1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
RHBDD1 MUTATED 4 2 1
RHBDD1 WILD-TYPE 178 131 71
'RHBDD1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.443 (Fisher's exact test), Q value = 0.77

Table S21133.  Gene #2013: 'RHBDD1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
RHBDD1 MUTATED 4 1 1 2
RHBDD1 WILD-TYPE 108 95 91 184
'RHBDD1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.677 (Fisher's exact test), Q value = 0.96

Table S21134.  Gene #2013: 'RHBDD1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
RHBDD1 MUTATED 1 0 1 2 1 2 1
RHBDD1 WILD-TYPE 59 50 48 38 62 123 98
'RHBDD1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.877 (Fisher's exact test), Q value = 1

Table S21135.  Gene #2013: 'RHBDD1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
RHBDD1 MUTATED 2 1 2 3
RHBDD1 WILD-TYPE 128 77 66 193
'RHBDD1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.866 (Fisher's exact test), Q value = 1

Table S21136.  Gene #2013: 'RHBDD1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
RHBDD1 MUTATED 2 1 0 1 2 1 0 0 1
RHBDD1 WILD-TYPE 38 61 28 79 67 47 43 28 73
'RHBDD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S21137.  Gene #2013: 'RHBDD1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
RHBDD1 MUTATED 1 1 1 0
RHBDD1 WILD-TYPE 32 30 26 19
'RHBDD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.195 (Fisher's exact test), Q value = 0.5

Table S21138.  Gene #2013: 'RHBDD1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
RHBDD1 MUTATED 1 1 0 1
RHBDD1 WILD-TYPE 53 9 24 21
'CPEB1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.12 (Fisher's exact test), Q value = 0.39

Table S21139.  Gene #2014: 'CPEB1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
CPEB1 MUTATED 2 0 0 1
CPEB1 WILD-TYPE 44 58 64 42
'CPEB1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S21140.  Gene #2014: 'CPEB1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
CPEB1 MUTATED 1 1 1
CPEB1 WILD-TYPE 50 82 76
'CPEB1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0097 (Fisher's exact test), Q value = 0.094

Table S21141.  Gene #2014: 'CPEB1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
CPEB1 MUTATED 7 0 0 0
CPEB1 WILD-TYPE 171 183 101 20

Figure S5157.  Get High-res Image Gene #2014: 'CPEB1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'CPEB1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.202 (Fisher's exact test), Q value = 0.51

Table S21142.  Gene #2014: 'CPEB1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
CPEB1 MUTATED 3 0 1
CPEB1 WILD-TYPE 84 80 99
'CPEB1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.372 (Fisher's exact test), Q value = 0.7

Table S21143.  Gene #2014: 'CPEB1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
CPEB1 MUTATED 0 2 3
CPEB1 WILD-TYPE 89 158 135
'CPEB1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.596 (Fisher's exact test), Q value = 0.9

Table S21144.  Gene #2014: 'CPEB1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
CPEB1 MUTATED 2 3 0
CPEB1 WILD-TYPE 180 130 72
'CPEB1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.442 (Fisher's exact test), Q value = 0.77

Table S21145.  Gene #2014: 'CPEB1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
CPEB1 MUTATED 0 1 2 4
CPEB1 WILD-TYPE 112 95 90 182
'CPEB1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.95 (Fisher's exact test), Q value = 1

Table S21146.  Gene #2014: 'CPEB1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
CPEB1 MUTATED 1 1 1 0 1 1 2
CPEB1 WILD-TYPE 59 49 48 40 62 124 97
'CPEB1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.524 (Fisher's exact test), Q value = 0.85

Table S21147.  Gene #2014: 'CPEB1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
CPEB1 MUTATED 1 1 0 5
CPEB1 WILD-TYPE 129 77 68 191
'CPEB1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.778 (Fisher's exact test), Q value = 1

Table S21148.  Gene #2014: 'CPEB1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
CPEB1 MUTATED 0 1 0 1 3 0 0 0 2
CPEB1 WILD-TYPE 40 61 28 79 66 48 43 28 72
'SKIV2L2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00806 (Fisher's exact test), Q value = 0.084

Table S21149.  Gene #2015: 'SKIV2L2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
SKIV2L2 MUTATED 0 0 0 3
SKIV2L2 WILD-TYPE 46 58 64 40

Figure S5158.  Get High-res Image Gene #2015: 'SKIV2L2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'SKIV2L2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.185 (Fisher's exact test), Q value = 0.49

Table S21150.  Gene #2015: 'SKIV2L2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
SKIV2L2 MUTATED 2 0 1
SKIV2L2 WILD-TYPE 49 83 76
'SKIV2L2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.331 (Fisher's exact test), Q value = 0.66

Table S21151.  Gene #2015: 'SKIV2L2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
SKIV2L2 MUTATED 8 4 1 0
SKIV2L2 WILD-TYPE 170 179 100 20
'SKIV2L2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.608 (Fisher's exact test), Q value = 0.91

Table S21152.  Gene #2015: 'SKIV2L2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
SKIV2L2 MUTATED 2 3 5
SKIV2L2 WILD-TYPE 85 77 95
'SKIV2L2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.698 (Fisher's exact test), Q value = 0.97

Table S21153.  Gene #2015: 'SKIV2L2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
SKIV2L2 MUTATED 4 4 4
SKIV2L2 WILD-TYPE 85 156 134
'SKIV2L2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.803 (Fisher's exact test), Q value = 1

Table S21154.  Gene #2015: 'SKIV2L2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
SKIV2L2 MUTATED 7 3 2
SKIV2L2 WILD-TYPE 175 130 70
'SKIV2L2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.205 (Fisher's exact test), Q value = 0.51

Table S21155.  Gene #2015: 'SKIV2L2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
SKIV2L2 MUTATED 4 1 5 3
SKIV2L2 WILD-TYPE 108 95 87 183
'SKIV2L2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00741 (Fisher's exact test), Q value = 0.08

Table S21156.  Gene #2015: 'SKIV2L2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
SKIV2L2 MUTATED 3 1 5 0 2 0 2
SKIV2L2 WILD-TYPE 57 49 44 40 61 125 97

Figure S5159.  Get High-res Image Gene #2015: 'SKIV2L2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'SKIV2L2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0334 (Fisher's exact test), Q value = 0.19

Table S21157.  Gene #2015: 'SKIV2L2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
SKIV2L2 MUTATED 8 1 0 3
SKIV2L2 WILD-TYPE 122 77 68 193

Figure S5160.  Get High-res Image Gene #2015: 'SKIV2L2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'SKIV2L2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.46 (Fisher's exact test), Q value = 0.79

Table S21158.  Gene #2015: 'SKIV2L2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
SKIV2L2 MUTATED 1 2 1 3 4 1 0 0 0
SKIV2L2 WILD-TYPE 39 60 27 77 65 47 43 28 74
'SKIV2L2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.692 (Fisher's exact test), Q value = 0.97

Table S21159.  Gene #2015: 'SKIV2L2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
SKIV2L2 MUTATED 1 2 1 2
SKIV2L2 WILD-TYPE 32 29 26 17
'SKIV2L2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.921 (Fisher's exact test), Q value = 1

Table S21160.  Gene #2015: 'SKIV2L2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
SKIV2L2 MUTATED 3 0 2 1
SKIV2L2 WILD-TYPE 51 10 22 21
'AMPD1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00262 (Fisher's exact test), Q value = 0.045

Table S21161.  Gene #2016: 'AMPD1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
AMPD1 MUTATED 4 0 0 4
AMPD1 WILD-TYPE 42 58 64 39

Figure S5161.  Get High-res Image Gene #2016: 'AMPD1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'AMPD1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0479 (Fisher's exact test), Q value = 0.23

Table S21162.  Gene #2016: 'AMPD1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
AMPD1 MUTATED 5 1 2
AMPD1 WILD-TYPE 46 82 75

Figure S5162.  Get High-res Image Gene #2016: 'AMPD1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'AMPD1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00028 (Fisher's exact test), Q value = 0.01

Table S21163.  Gene #2016: 'AMPD1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
AMPD1 MUTATED 15 1 1 1
AMPD1 WILD-TYPE 163 182 100 19

Figure S5163.  Get High-res Image Gene #2016: 'AMPD1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'AMPD1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00345 (Fisher's exact test), Q value = 0.053

Table S21164.  Gene #2016: 'AMPD1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
AMPD1 MUTATED 8 0 2
AMPD1 WILD-TYPE 79 80 98

Figure S5164.  Get High-res Image Gene #2016: 'AMPD1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'AMPD1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.945 (Fisher's exact test), Q value = 1

Table S21165.  Gene #2016: 'AMPD1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
AMPD1 MUTATED 3 7 5
AMPD1 WILD-TYPE 86 153 133
'AMPD1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.415 (Fisher's exact test), Q value = 0.74

Table S21166.  Gene #2016: 'AMPD1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
AMPD1 MUTATED 7 7 1
AMPD1 WILD-TYPE 175 126 71
'AMPD1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0391 (Fisher's exact test), Q value = 0.21

Table S21167.  Gene #2016: 'AMPD1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
AMPD1 MUTATED 0 6 4 8
AMPD1 WILD-TYPE 112 90 88 178

Figure S5165.  Get High-res Image Gene #2016: 'AMPD1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'AMPD1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0573 (Fisher's exact test), Q value = 0.26

Table S21168.  Gene #2016: 'AMPD1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
AMPD1 MUTATED 1 3 5 0 1 2 6
AMPD1 WILD-TYPE 59 47 44 40 62 123 93
'AMPD1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.736 (Fisher's exact test), Q value = 1

Table S21169.  Gene #2016: 'AMPD1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
AMPD1 MUTATED 5 4 1 7
AMPD1 WILD-TYPE 125 74 67 189
'AMPD1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.416 (Fisher's exact test), Q value = 0.74

Table S21170.  Gene #2016: 'AMPD1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
AMPD1 MUTATED 2 2 1 2 5 0 3 1 1
AMPD1 WILD-TYPE 38 60 27 78 64 48 40 27 73
'AMPD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.232 (Fisher's exact test), Q value = 0.55

Table S21171.  Gene #2016: 'AMPD1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
AMPD1 MUTATED 3 0 1 2
AMPD1 WILD-TYPE 30 31 26 17
'AMPD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.685 (Fisher's exact test), Q value = 0.96

Table S21172.  Gene #2016: 'AMPD1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
AMPD1 MUTATED 4 0 2 0
AMPD1 WILD-TYPE 50 10 22 22
'MIPEP MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0078 (Fisher's exact test), Q value = 0.082

Table S21173.  Gene #2017: 'MIPEP MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
MIPEP MUTATED 0 0 0 3
MIPEP WILD-TYPE 46 58 64 40

Figure S5166.  Get High-res Image Gene #2017: 'MIPEP MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'MIPEP MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.185 (Fisher's exact test), Q value = 0.49

Table S21174.  Gene #2017: 'MIPEP MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
MIPEP MUTATED 2 0 1
MIPEP WILD-TYPE 49 83 76
'MIPEP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0122 (Fisher's exact test), Q value = 0.11

Table S21175.  Gene #2017: 'MIPEP MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
MIPEP MUTATED 8 0 1 0
MIPEP WILD-TYPE 170 183 100 20

Figure S5167.  Get High-res Image Gene #2017: 'MIPEP MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'MIPEP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.384 (Fisher's exact test), Q value = 0.71

Table S21176.  Gene #2017: 'MIPEP MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
MIPEP MUTATED 2 0 3
MIPEP WILD-TYPE 85 80 97
'MIPEP MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S21177.  Gene #2017: 'MIPEP MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
MIPEP MUTATED 2 4 3
MIPEP WILD-TYPE 87 156 135
'MIPEP MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.495 (Fisher's exact test), Q value = 0.82

Table S21178.  Gene #2017: 'MIPEP MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
MIPEP MUTATED 3 5 1
MIPEP WILD-TYPE 179 128 71
'MIPEP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.376 (Fisher's exact test), Q value = 0.71

Table S21179.  Gene #2017: 'MIPEP MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
MIPEP MUTATED 0 2 2 5
MIPEP WILD-TYPE 112 94 90 181
'MIPEP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.108 (Fisher's exact test), Q value = 0.36

Table S21180.  Gene #2017: 'MIPEP MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
MIPEP MUTATED 2 2 0 0 1 0 4
MIPEP WILD-TYPE 58 48 49 40 62 125 95
'MIPEP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.284 (Fisher's exact test), Q value = 0.61

Table S21181.  Gene #2017: 'MIPEP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
MIPEP MUTATED 4 0 0 5
MIPEP WILD-TYPE 126 78 68 191
'MIPEP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.283 (Fisher's exact test), Q value = 0.61

Table S21182.  Gene #2017: 'MIPEP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
MIPEP MUTATED 1 1 1 0 4 0 1 0 1
MIPEP WILD-TYPE 39 61 27 80 65 48 42 28 73
'KRT39 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.735 (Fisher's exact test), Q value = 1

Table S21183.  Gene #2018: 'KRT39 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
KRT39 MUTATED 3 3 0 0
KRT39 WILD-TYPE 175 180 101 20
'KRT39 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S21184.  Gene #2018: 'KRT39 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
KRT39 MUTATED 2 1 2
KRT39 WILD-TYPE 85 79 98
'KRT39 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S21185.  Gene #2018: 'KRT39 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
KRT39 MUTATED 1 3 3
KRT39 WILD-TYPE 88 157 135
'KRT39 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S21186.  Gene #2018: 'KRT39 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
KRT39 MUTATED 4 2 1
KRT39 WILD-TYPE 178 131 71
'KRT39 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.496 (Fisher's exact test), Q value = 0.82

Table S21187.  Gene #2018: 'KRT39 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
KRT39 MUTATED 2 2 2 1
KRT39 WILD-TYPE 110 94 90 185
'KRT39 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.141 (Fisher's exact test), Q value = 0.42

Table S21188.  Gene #2018: 'KRT39 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
KRT39 MUTATED 3 1 0 0 1 0 2
KRT39 WILD-TYPE 57 49 49 40 62 125 97
'KRT39 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.662 (Fisher's exact test), Q value = 0.95

Table S21189.  Gene #2018: 'KRT39 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
KRT39 MUTATED 3 0 1 3
KRT39 WILD-TYPE 127 78 67 193
'KRT39 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.55 (Fisher's exact test), Q value = 0.87

Table S21190.  Gene #2018: 'KRT39 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
KRT39 MUTATED 0 1 2 1 1 0 1 0 1
KRT39 WILD-TYPE 40 61 26 79 68 48 42 28 73
'DDX11 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00464 (Fisher's exact test), Q value = 0.062

Table S21191.  Gene #2019: 'DDX11 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
DDX11 MUTATED 8 0 0 0
DDX11 WILD-TYPE 170 183 101 20

Figure S5168.  Get High-res Image Gene #2019: 'DDX11 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'DDX11 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0259 (Fisher's exact test), Q value = 0.16

Table S21192.  Gene #2019: 'DDX11 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
DDX11 MUTATED 1 0 6
DDX11 WILD-TYPE 86 80 94

Figure S5169.  Get High-res Image Gene #2019: 'DDX11 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'DDX11 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S21193.  Gene #2019: 'DDX11 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
DDX11 MUTATED 2 3 3
DDX11 WILD-TYPE 87 157 135
'DDX11 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.723 (Fisher's exact test), Q value = 0.99

Table S21194.  Gene #2019: 'DDX11 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
DDX11 MUTATED 3 3 2
DDX11 WILD-TYPE 179 130 70
'DDX11 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00233 (Fisher's exact test), Q value = 0.042

Table S21195.  Gene #2019: 'DDX11 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
DDX11 MUTATED 0 6 1 1
DDX11 WILD-TYPE 112 90 91 185

Figure S5170.  Get High-res Image Gene #2019: 'DDX11 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'DDX11 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00432 (Fisher's exact test), Q value = 0.06

Table S21196.  Gene #2019: 'DDX11 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
DDX11 MUTATED 0 2 4 0 0 0 2
DDX11 WILD-TYPE 60 48 45 40 63 125 97

Figure S5171.  Get High-res Image Gene #2019: 'DDX11 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'DDX11 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.49 (Fisher's exact test), Q value = 0.82

Table S21197.  Gene #2019: 'DDX11 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
DDX11 MUTATED 4 1 0 3
DDX11 WILD-TYPE 126 77 68 193
'DDX11 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.38 (Fisher's exact test), Q value = 0.71

Table S21198.  Gene #2019: 'DDX11 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
DDX11 MUTATED 2 1 0 1 3 0 1 0 0
DDX11 WILD-TYPE 38 61 28 79 66 48 42 28 74
'VEPH1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0173 (Fisher's exact test), Q value = 0.13

Table S21199.  Gene #2020: 'VEPH1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
VEPH1 MUTATED 5 0 1 2
VEPH1 WILD-TYPE 41 58 63 41

Figure S5172.  Get High-res Image Gene #2020: 'VEPH1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'VEPH1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0037 (Fisher's exact test), Q value = 0.055

Table S21200.  Gene #2020: 'VEPH1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
VEPH1 MUTATED 6 1 1
VEPH1 WILD-TYPE 45 82 76

Figure S5173.  Get High-res Image Gene #2020: 'VEPH1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'VEPH1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00125 (Fisher's exact test), Q value = 0.029

Table S21201.  Gene #2020: 'VEPH1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
VEPH1 MUTATED 15 2 1 1
VEPH1 WILD-TYPE 163 181 100 19

Figure S5174.  Get High-res Image Gene #2020: 'VEPH1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'VEPH1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.257 (Fisher's exact test), Q value = 0.58

Table S21202.  Gene #2020: 'VEPH1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
VEPH1 MUTATED 6 4 2
VEPH1 WILD-TYPE 81 76 98
'VEPH1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0475 (Fisher's exact test), Q value = 0.23

Table S21203.  Gene #2020: 'VEPH1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
VEPH1 MUTATED 1 6 11
VEPH1 WILD-TYPE 88 154 127

Figure S5175.  Get High-res Image Gene #2020: 'VEPH1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'VEPH1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.479 (Fisher's exact test), Q value = 0.81

Table S21204.  Gene #2020: 'VEPH1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
VEPH1 MUTATED 11 4 3
VEPH1 WILD-TYPE 171 129 69
'VEPH1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S21205.  Gene #2020: 'VEPH1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
VEPH1 MUTATED 4 4 4 8
VEPH1 WILD-TYPE 108 92 88 178
'VEPH1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0115 (Fisher's exact test), Q value = 0.1

Table S21206.  Gene #2020: 'VEPH1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
VEPH1 MUTATED 3 1 6 0 2 1 7
VEPH1 WILD-TYPE 57 49 43 40 61 124 92

Figure S5176.  Get High-res Image Gene #2020: 'VEPH1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'VEPH1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.771 (Fisher's exact test), Q value = 1

Table S21207.  Gene #2020: 'VEPH1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
VEPH1 MUTATED 4 4 2 10
VEPH1 WILD-TYPE 126 74 66 186
'VEPH1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.111 (Fisher's exact test), Q value = 0.37

Table S21208.  Gene #2020: 'VEPH1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
VEPH1 MUTATED 0 4 1 3 8 2 1 0 1
VEPH1 WILD-TYPE 40 58 27 77 61 46 42 28 73
'VEPH1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0143 (Fisher's exact test), Q value = 0.12

Table S21209.  Gene #2020: 'VEPH1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
VEPH1 MUTATED 1 0 1 4
VEPH1 WILD-TYPE 32 31 26 15

Figure S5177.  Get High-res Image Gene #2020: 'VEPH1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'VEPH1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.644 (Fisher's exact test), Q value = 0.93

Table S21210.  Gene #2020: 'VEPH1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
VEPH1 MUTATED 2 1 2 1
VEPH1 WILD-TYPE 52 9 22 21
'OR2M5 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.258 (Fisher's exact test), Q value = 0.58

Table S21211.  Gene #2021: 'OR2M5 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
OR2M5 MUTATED 2 0 1 2
OR2M5 WILD-TYPE 44 58 63 41
'OR2M5 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.739 (Fisher's exact test), Q value = 1

Table S21212.  Gene #2021: 'OR2M5 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
OR2M5 MUTATED 2 2 1
OR2M5 WILD-TYPE 49 81 76
'OR2M5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.745 (Fisher's exact test), Q value = 1

Table S21213.  Gene #2021: 'OR2M5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
OR2M5 MUTATED 6 3 3 0
OR2M5 WILD-TYPE 172 180 98 20
'OR2M5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.142 (Fisher's exact test), Q value = 0.42

Table S21214.  Gene #2021: 'OR2M5 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
OR2M5 MUTATED 5 1 1
OR2M5 WILD-TYPE 82 79 99
'OR2M5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.321 (Fisher's exact test), Q value = 0.65

Table S21215.  Gene #2021: 'OR2M5 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
OR2M5 MUTATED 1 3 6
OR2M5 WILD-TYPE 88 157 132
'OR2M5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.331 (Fisher's exact test), Q value = 0.66

Table S21216.  Gene #2021: 'OR2M5 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
OR2M5 MUTATED 5 5 0
OR2M5 WILD-TYPE 177 128 72
'OR2M5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.792 (Fisher's exact test), Q value = 1

Table S21217.  Gene #2021: 'OR2M5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
OR2M5 MUTATED 3 1 3 5
OR2M5 WILD-TYPE 109 95 89 181
'OR2M5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.412 (Fisher's exact test), Q value = 0.74

Table S21218.  Gene #2021: 'OR2M5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
OR2M5 MUTATED 2 3 1 0 2 1 3
OR2M5 WILD-TYPE 58 47 48 40 61 124 96
'OR2M5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S21219.  Gene #2021: 'OR2M5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
OR2M5 MUTATED 3 2 2 5
OR2M5 WILD-TYPE 127 76 66 191
'OR2M5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.193 (Fisher's exact test), Q value = 0.5

Table S21220.  Gene #2021: 'OR2M5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
OR2M5 MUTATED 1 2 1 0 1 1 3 2 1
OR2M5 WILD-TYPE 39 60 27 80 68 47 40 26 73
'OR2M5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.35 (Fisher's exact test), Q value = 0.68

Table S21221.  Gene #2021: 'OR2M5 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
OR2M5 MUTATED 2 0 2 2
OR2M5 WILD-TYPE 31 31 25 17
'OR2M5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.852 (Fisher's exact test), Q value = 1

Table S21222.  Gene #2021: 'OR2M5 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
OR2M5 MUTATED 3 0 1 2
OR2M5 WILD-TYPE 51 10 23 20
'RBP3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.308 (Fisher's exact test), Q value = 0.64

Table S21223.  Gene #2022: 'RBP3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
RBP3 MUTATED 1 1 0 2
RBP3 WILD-TYPE 45 57 64 41
'RBP3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.833 (Fisher's exact test), Q value = 1

Table S21224.  Gene #2022: 'RBP3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
RBP3 MUTATED 1 1 2
RBP3 WILD-TYPE 50 82 75
'RBP3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00338 (Fisher's exact test), Q value = 0.053

Table S21225.  Gene #2022: 'RBP3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
RBP3 MUTATED 12 2 0 0
RBP3 WILD-TYPE 166 181 101 20

Figure S5178.  Get High-res Image Gene #2022: 'RBP3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'RBP3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.306 (Fisher's exact test), Q value = 0.64

Table S21226.  Gene #2022: 'RBP3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
RBP3 MUTATED 5 1 4
RBP3 WILD-TYPE 82 79 96
'RBP3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0835 (Fisher's exact test), Q value = 0.31

Table S21227.  Gene #2022: 'RBP3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
RBP3 MUTATED 0 5 7
RBP3 WILD-TYPE 89 155 131
'RBP3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.745 (Fisher's exact test), Q value = 1

Table S21228.  Gene #2022: 'RBP3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
RBP3 MUTATED 6 5 1
RBP3 WILD-TYPE 176 128 71
'RBP3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.301 (Fisher's exact test), Q value = 0.63

Table S21229.  Gene #2022: 'RBP3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
RBP3 MUTATED 1 5 3 5
RBP3 WILD-TYPE 111 91 89 181
'RBP3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00293 (Fisher's exact test), Q value = 0.048

Table S21230.  Gene #2022: 'RBP3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
RBP3 MUTATED 1 1 6 0 2 0 4
RBP3 WILD-TYPE 59 49 43 40 61 125 95

Figure S5179.  Get High-res Image Gene #2022: 'RBP3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'RBP3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.206 (Fisher's exact test), Q value = 0.51

Table S21231.  Gene #2022: 'RBP3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
RBP3 MUTATED 7 2 0 5
RBP3 WILD-TYPE 123 76 68 191
'RBP3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00417 (Fisher's exact test), Q value = 0.059

Table S21232.  Gene #2022: 'RBP3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
RBP3 MUTATED 0 2 2 1 8 0 0 0 1
RBP3 WILD-TYPE 40 60 26 79 61 48 43 28 73

Figure S5180.  Get High-res Image Gene #2022: 'RBP3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'RBP3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.873 (Fisher's exact test), Q value = 1

Table S21233.  Gene #2022: 'RBP3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
RBP3 MUTATED 1 1 0 1
RBP3 WILD-TYPE 32 30 27 18
'RBP3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S21234.  Gene #2022: 'RBP3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
RBP3 MUTATED 2 0 1 0
RBP3 WILD-TYPE 52 10 23 22
'SGCE MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.461 (Fisher's exact test), Q value = 0.79

Table S21235.  Gene #2023: 'SGCE MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
SGCE MUTATED 2 0 2 1
SGCE WILD-TYPE 44 58 62 42
'SGCE MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.74 (Fisher's exact test), Q value = 1

Table S21236.  Gene #2023: 'SGCE MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
SGCE MUTATED 2 2 1
SGCE WILD-TYPE 49 81 76
'SGCE MUTATION STATUS' versus 'CN_CNMF'

P value = 0.127 (Fisher's exact test), Q value = 0.4

Table S21237.  Gene #2023: 'SGCE MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
SGCE MUTATED 5 1 1 1
SGCE WILD-TYPE 173 182 100 19
'SGCE MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0604 (Fisher's exact test), Q value = 0.27

Table S21238.  Gene #2023: 'SGCE MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
SGCE MUTATED 3 0 0
SGCE WILD-TYPE 84 80 100
'SGCE MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.832 (Fisher's exact test), Q value = 1

Table S21239.  Gene #2023: 'SGCE MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
SGCE MUTATED 1 1 2
SGCE WILD-TYPE 88 159 136
'SGCE MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.668 (Fisher's exact test), Q value = 0.95

Table S21240.  Gene #2023: 'SGCE MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
SGCE MUTATED 3 1 0
SGCE WILD-TYPE 179 132 72
'SGCE MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.419 (Fisher's exact test), Q value = 0.75

Table S21241.  Gene #2023: 'SGCE MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
SGCE MUTATED 0 2 2 4
SGCE WILD-TYPE 112 94 90 182
'SGCE MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.132 (Fisher's exact test), Q value = 0.41

Table S21242.  Gene #2023: 'SGCE MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
SGCE MUTATED 0 0 1 2 0 1 4
SGCE WILD-TYPE 60 50 48 38 63 124 95
'SGCE MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.657 (Fisher's exact test), Q value = 0.94

Table S21243.  Gene #2023: 'SGCE MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
SGCE MUTATED 1 1 2 4
SGCE WILD-TYPE 129 77 66 192
'SGCE MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.771 (Fisher's exact test), Q value = 1

Table S21244.  Gene #2023: 'SGCE MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
SGCE MUTATED 0 0 1 1 1 1 1 1 2
SGCE WILD-TYPE 40 62 27 79 68 47 42 27 72
'SGCE MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.359 (Fisher's exact test), Q value = 0.69

Table S21245.  Gene #2023: 'SGCE MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
SGCE MUTATED 1 0 2 0
SGCE WILD-TYPE 32 31 25 19
'SGCE MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.447 (Fisher's exact test), Q value = 0.77

Table S21246.  Gene #2023: 'SGCE MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
SGCE MUTATED 1 0 2 0
SGCE WILD-TYPE 53 10 22 22
'ZNF622 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.255 (Fisher's exact test), Q value = 0.58

Table S21247.  Gene #2024: 'ZNF622 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ZNF622 MUTATED 5 1 3 0
ZNF622 WILD-TYPE 173 182 98 20
'ZNF622 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.504 (Fisher's exact test), Q value = 0.83

Table S21248.  Gene #2024: 'ZNF622 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ZNF622 MUTATED 1 2 4
ZNF622 WILD-TYPE 86 78 96
'ZNF622 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S21249.  Gene #2024: 'ZNF622 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ZNF622 MUTATED 1 3 2
ZNF622 WILD-TYPE 88 157 136
'ZNF622 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.86 (Fisher's exact test), Q value = 1

Table S21250.  Gene #2024: 'ZNF622 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ZNF622 MUTATED 2 3 1
ZNF622 WILD-TYPE 180 130 71
'ZNF622 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.121 (Fisher's exact test), Q value = 0.39

Table S21251.  Gene #2024: 'ZNF622 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ZNF622 MUTATED 0 2 4 3
ZNF622 WILD-TYPE 112 94 88 183
'ZNF622 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0612 (Fisher's exact test), Q value = 0.27

Table S21252.  Gene #2024: 'ZNF622 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ZNF622 MUTATED 1 0 4 0 2 1 1
ZNF622 WILD-TYPE 59 50 45 40 61 124 98
'ZNF622 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.308 (Fisher's exact test), Q value = 0.64

Table S21253.  Gene #2024: 'ZNF622 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ZNF622 MUTATED 5 1 0 3
ZNF622 WILD-TYPE 125 77 68 193
'ZNF622 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.219 (Fisher's exact test), Q value = 0.53

Table S21254.  Gene #2024: 'ZNF622 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ZNF622 MUTATED 1 2 1 1 4 0 0 0 0
ZNF622 WILD-TYPE 39 60 27 79 65 48 43 28 74
'ZNF622 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.254 (Fisher's exact test), Q value = 0.58

Table S21255.  Gene #2024: 'ZNF622 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
ZNF622 MUTATED 2 0 0 1
ZNF622 WILD-TYPE 31 31 27 18
'ZNF622 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S21256.  Gene #2024: 'ZNF622 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
ZNF622 MUTATED 2 0 1 0
ZNF622 WILD-TYPE 52 10 23 22
'FAM160B1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0645 (Fisher's exact test), Q value = 0.28

Table S21257.  Gene #2025: 'FAM160B1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
FAM160B1 MUTATED 1 0 0 2
FAM160B1 WILD-TYPE 45 58 64 41
'FAM160B1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.788 (Fisher's exact test), Q value = 1

Table S21258.  Gene #2025: 'FAM160B1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
FAM160B1 MUTATED 0 2 1
FAM160B1 WILD-TYPE 51 81 76
'FAM160B1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00172 (Fisher's exact test), Q value = 0.034

Table S21259.  Gene #2025: 'FAM160B1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
FAM160B1 MUTATED 9 0 0 0
FAM160B1 WILD-TYPE 169 183 101 20

Figure S5181.  Get High-res Image Gene #2025: 'FAM160B1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'FAM160B1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.131 (Fisher's exact test), Q value = 0.4

Table S21260.  Gene #2025: 'FAM160B1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
FAM160B1 MUTATED 0 1 4
FAM160B1 WILD-TYPE 87 79 96
'FAM160B1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.547 (Fisher's exact test), Q value = 0.87

Table S21261.  Gene #2025: 'FAM160B1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
FAM160B1 MUTATED 2 4 1
FAM160B1 WILD-TYPE 87 156 137
'FAM160B1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0136 (Fisher's exact test), Q value = 0.11

Table S21262.  Gene #2025: 'FAM160B1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
FAM160B1 MUTATED 0 5 2
FAM160B1 WILD-TYPE 182 128 70

Figure S5182.  Get High-res Image Gene #2025: 'FAM160B1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'FAM160B1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.167 (Fisher's exact test), Q value = 0.46

Table S21263.  Gene #2025: 'FAM160B1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
FAM160B1 MUTATED 1 4 0 4
FAM160B1 WILD-TYPE 111 92 92 182
'FAM160B1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.281 (Fisher's exact test), Q value = 0.61

Table S21264.  Gene #2025: 'FAM160B1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
FAM160B1 MUTATED 2 1 0 2 0 1 3
FAM160B1 WILD-TYPE 58 49 49 38 63 124 96
'FAM160B1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.293 (Fisher's exact test), Q value = 0.62

Table S21265.  Gene #2025: 'FAM160B1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
FAM160B1 MUTATED 3 0 0 6
FAM160B1 WILD-TYPE 127 78 68 190
'FAM160B1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.258 (Fisher's exact test), Q value = 0.58

Table S21266.  Gene #2025: 'FAM160B1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
FAM160B1 MUTATED 2 0 1 2 3 1 0 0 0
FAM160B1 WILD-TYPE 38 62 27 78 66 47 43 28 74
'UBD MUTATION STATUS' versus 'CN_CNMF'

P value = 0.12 (Fisher's exact test), Q value = 0.39

Table S21267.  Gene #2026: 'UBD MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
UBD MUTATED 4 0 0 0
UBD WILD-TYPE 174 183 101 20
'UBD MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.781 (Fisher's exact test), Q value = 1

Table S21268.  Gene #2026: 'UBD MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
UBD MUTATED 1 0 2
UBD WILD-TYPE 86 80 98
'UBD MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S21269.  Gene #2026: 'UBD MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
UBD MUTATED 1 1 1
UBD WILD-TYPE 88 159 137
'UBD MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.771 (Fisher's exact test), Q value = 1

Table S21270.  Gene #2026: 'UBD MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
UBD MUTATED 1 1 1
UBD WILD-TYPE 181 132 71
'UBD MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.162 (Fisher's exact test), Q value = 0.45

Table S21271.  Gene #2026: 'UBD MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
UBD MUTATED 1 2 1 0
UBD WILD-TYPE 111 94 91 186
'UBD MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.042 (Fisher's exact test), Q value = 0.22

Table S21272.  Gene #2026: 'UBD MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
UBD MUTATED 1 1 2 0 0 0 0
UBD WILD-TYPE 59 49 47 40 63 125 99

Figure S5183.  Get High-res Image Gene #2026: 'UBD MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'UBD MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.107 (Fisher's exact test), Q value = 0.36

Table S21273.  Gene #2026: 'UBD MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
UBD MUTATED 3 1 0 0
UBD WILD-TYPE 127 77 68 196
'UBD MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.884 (Fisher's exact test), Q value = 1

Table S21274.  Gene #2026: 'UBD MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
UBD MUTATED 1 1 0 1 1 0 0 0 0
UBD WILD-TYPE 39 61 28 79 68 48 43 28 74
'OR8K1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.816 (Fisher's exact test), Q value = 1

Table S21275.  Gene #2027: 'OR8K1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
OR8K1 MUTATED 1 1 1 2
OR8K1 WILD-TYPE 45 57 63 41
'OR8K1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S21276.  Gene #2027: 'OR8K1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
OR8K1 MUTATED 1 2 2
OR8K1 WILD-TYPE 50 81 75
'OR8K1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0464 (Fisher's exact test), Q value = 0.23

Table S21277.  Gene #2027: 'OR8K1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
OR8K1 MUTATED 10 2 1 0
OR8K1 WILD-TYPE 168 181 100 20

Figure S5184.  Get High-res Image Gene #2027: 'OR8K1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'OR8K1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.905 (Fisher's exact test), Q value = 1

Table S21278.  Gene #2027: 'OR8K1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
OR8K1 MUTATED 2 3 3
OR8K1 WILD-TYPE 85 77 97
'OR8K1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.921 (Fisher's exact test), Q value = 1

Table S21279.  Gene #2027: 'OR8K1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
OR8K1 MUTATED 2 5 3
OR8K1 WILD-TYPE 87 155 135
'OR8K1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.915 (Fisher's exact test), Q value = 1

Table S21280.  Gene #2027: 'OR8K1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
OR8K1 MUTATED 5 4 1
OR8K1 WILD-TYPE 177 129 71
'OR8K1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.938 (Fisher's exact test), Q value = 1

Table S21281.  Gene #2027: 'OR8K1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
OR8K1 MUTATED 4 2 2 5
OR8K1 WILD-TYPE 108 94 90 181
'OR8K1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.141 (Fisher's exact test), Q value = 0.42

Table S21282.  Gene #2027: 'OR8K1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
OR8K1 MUTATED 0 2 3 1 1 1 5
OR8K1 WILD-TYPE 60 48 46 39 62 124 94
'OR8K1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.56 (Fisher's exact test), Q value = 0.87

Table S21283.  Gene #2027: 'OR8K1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
OR8K1 MUTATED 6 1 1 5
OR8K1 WILD-TYPE 124 77 67 191
'OR8K1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0773 (Fisher's exact test), Q value = 0.3

Table S21284.  Gene #2027: 'OR8K1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
OR8K1 MUTATED 0 3 4 1 2 1 1 0 1
OR8K1 WILD-TYPE 40 59 24 79 67 47 42 28 73
'TAB1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.279 (Fisher's exact test), Q value = 0.61

Table S21285.  Gene #2028: 'TAB1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
TAB1 MUTATED 3 0 0 0
TAB1 WILD-TYPE 175 183 101 20
'TAB1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.615 (Fisher's exact test), Q value = 0.91

Table S21286.  Gene #2028: 'TAB1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
TAB1 MUTATED 0 1 2
TAB1 WILD-TYPE 89 159 136
'TAB1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0833 (Fisher's exact test), Q value = 0.31

Table S21287.  Gene #2028: 'TAB1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
TAB1 MUTATED 0 3 0
TAB1 WILD-TYPE 182 130 72
'TAB1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.267 (Fisher's exact test), Q value = 0.59

Table S21288.  Gene #2028: 'TAB1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
TAB1 MUTATED 0 2 0 1
TAB1 WILD-TYPE 112 94 92 185
'TAB1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0956 (Fisher's exact test), Q value = 0.34

Table S21289.  Gene #2028: 'TAB1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
TAB1 MUTATED 0 0 2 0 0 0 1
TAB1 WILD-TYPE 60 50 47 40 63 125 98
'TAB1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.642 (Fisher's exact test), Q value = 0.93

Table S21290.  Gene #2028: 'TAB1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
TAB1 MUTATED 2 0 0 1
TAB1 WILD-TYPE 128 78 68 195
'TAB1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.123 (Fisher's exact test), Q value = 0.39

Table S21291.  Gene #2028: 'TAB1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
TAB1 MUTATED 0 0 0 0 2 0 0 1 0
TAB1 WILD-TYPE 40 62 28 80 67 48 43 27 74
'SLC30A8 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00162 (Fisher's exact test), Q value = 0.033

Table S21292.  Gene #2029: 'SLC30A8 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
SLC30A8 MUTATED 5 0 0 1
SLC30A8 WILD-TYPE 41 58 64 42

Figure S5185.  Get High-res Image Gene #2029: 'SLC30A8 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'SLC30A8 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0151 (Fisher's exact test), Q value = 0.12

Table S21293.  Gene #2029: 'SLC30A8 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
SLC30A8 MUTATED 4 0 2
SLC30A8 WILD-TYPE 47 83 75

Figure S5186.  Get High-res Image Gene #2029: 'SLC30A8 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'SLC30A8 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.464 (Fisher's exact test), Q value = 0.79

Table S21294.  Gene #2029: 'SLC30A8 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
SLC30A8 MUTATED 9 4 3 0
SLC30A8 WILD-TYPE 169 179 98 20
'SLC30A8 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.85 (Fisher's exact test), Q value = 1

Table S21295.  Gene #2029: 'SLC30A8 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
SLC30A8 MUTATED 4 2 4
SLC30A8 WILD-TYPE 83 78 96
'SLC30A8 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.938 (Fisher's exact test), Q value = 1

Table S21296.  Gene #2029: 'SLC30A8 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
SLC30A8 MUTATED 3 5 6
SLC30A8 WILD-TYPE 86 155 132
'SLC30A8 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.937 (Fisher's exact test), Q value = 1

Table S21297.  Gene #2029: 'SLC30A8 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
SLC30A8 MUTATED 6 5 3
SLC30A8 WILD-TYPE 176 128 69
'SLC30A8 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.72 (Fisher's exact test), Q value = 0.99

Table S21298.  Gene #2029: 'SLC30A8 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
SLC30A8 MUTATED 3 5 2 7
SLC30A8 WILD-TYPE 109 91 90 179
'SLC30A8 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00485 (Fisher's exact test), Q value = 0.063

Table S21299.  Gene #2029: 'SLC30A8 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
SLC30A8 MUTATED 1 2 1 5 2 0 6
SLC30A8 WILD-TYPE 59 48 48 35 61 125 93

Figure S5187.  Get High-res Image Gene #2029: 'SLC30A8 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'SLC30A8 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.803 (Fisher's exact test), Q value = 1

Table S21300.  Gene #2029: 'SLC30A8 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
SLC30A8 MUTATED 6 3 1 7
SLC30A8 WILD-TYPE 124 75 67 189
'SLC30A8 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0114 (Fisher's exact test), Q value = 0.1

Table S21301.  Gene #2029: 'SLC30A8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
SLC30A8 MUTATED 2 2 0 0 7 2 3 1 0
SLC30A8 WILD-TYPE 38 60 28 80 62 46 40 27 74

Figure S5188.  Get High-res Image Gene #2029: 'SLC30A8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'SLC30A8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.557 (Fisher's exact test), Q value = 0.87

Table S21302.  Gene #2029: 'SLC30A8 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
SLC30A8 MUTATED 1 2 0 0
SLC30A8 WILD-TYPE 32 29 27 19
'SLC30A8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.254 (Fisher's exact test), Q value = 0.58

Table S21303.  Gene #2029: 'SLC30A8 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
SLC30A8 MUTATED 1 0 0 2
SLC30A8 WILD-TYPE 53 10 24 20
'MPZL1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.55 (Fisher's exact test), Q value = 0.87

Table S21304.  Gene #2030: 'MPZL1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
MPZL1 MUTATED 4 3 0 0
MPZL1 WILD-TYPE 174 180 101 20
'MPZL1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.876 (Fisher's exact test), Q value = 1

Table S21305.  Gene #2030: 'MPZL1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
MPZL1 MUTATED 2 1 3
MPZL1 WILD-TYPE 85 79 97
'MPZL1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.511 (Fisher's exact test), Q value = 0.83

Table S21306.  Gene #2030: 'MPZL1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
MPZL1 MUTATED 0 3 3
MPZL1 WILD-TYPE 89 157 135
'MPZL1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.862 (Fisher's exact test), Q value = 1

Table S21307.  Gene #2030: 'MPZL1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
MPZL1 MUTATED 2 3 1
MPZL1 WILD-TYPE 180 130 71
'MPZL1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.831 (Fisher's exact test), Q value = 1

Table S21308.  Gene #2030: 'MPZL1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
MPZL1 MUTATED 2 2 1 2
MPZL1 WILD-TYPE 110 94 91 184
'MPZL1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0189 (Fisher's exact test), Q value = 0.14

Table S21309.  Gene #2030: 'MPZL1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
MPZL1 MUTATED 0 2 3 0 0 0 2
MPZL1 WILD-TYPE 60 48 46 40 63 125 97

Figure S5189.  Get High-res Image Gene #2030: 'MPZL1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'MPZL1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.862 (Fisher's exact test), Q value = 1

Table S21310.  Gene #2030: 'MPZL1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
MPZL1 MUTATED 3 1 1 2
MPZL1 WILD-TYPE 127 77 67 194
'MPZL1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.341 (Fisher's exact test), Q value = 0.67

Table S21311.  Gene #2030: 'MPZL1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
MPZL1 MUTATED 0 1 0 1 3 0 2 0 0
MPZL1 WILD-TYPE 40 61 28 79 66 48 41 28 74
'MPZL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.136 (Fisher's exact test), Q value = 0.41

Table S21312.  Gene #2030: 'MPZL1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
MPZL1 MUTATED 1 0 0 2
MPZL1 WILD-TYPE 32 31 27 17
'MPZL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S21313.  Gene #2030: 'MPZL1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
MPZL1 MUTATED 2 0 1 0
MPZL1 WILD-TYPE 52 10 23 22
'CCDC112 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0273 (Fisher's exact test), Q value = 0.17

Table S21314.  Gene #2031: 'CCDC112 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
CCDC112 MUTATED 3 0 0 2
CCDC112 WILD-TYPE 43 58 64 41

Figure S5190.  Get High-res Image Gene #2031: 'CCDC112 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'CCDC112 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.254 (Fisher's exact test), Q value = 0.58

Table S21315.  Gene #2031: 'CCDC112 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
CCDC112 MUTATED 3 1 1
CCDC112 WILD-TYPE 48 82 76
'CCDC112 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0118 (Fisher's exact test), Q value = 0.11

Table S21316.  Gene #2031: 'CCDC112 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
CCDC112 MUTATED 8 0 1 0
CCDC112 WILD-TYPE 170 183 100 20

Figure S5191.  Get High-res Image Gene #2031: 'CCDC112 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'CCDC112 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.557 (Fisher's exact test), Q value = 0.87

Table S21317.  Gene #2031: 'CCDC112 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
CCDC112 MUTATED 2 0 2
CCDC112 WILD-TYPE 85 80 98
'CCDC112 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.03 (Fisher's exact test), Q value = 0.18

Table S21318.  Gene #2031: 'CCDC112 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
CCDC112 MUTATED 1 0 5
CCDC112 WILD-TYPE 88 160 133

Figure S5192.  Get High-res Image Gene #2031: 'CCDC112 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'CCDC112 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.759 (Fisher's exact test), Q value = 1

Table S21319.  Gene #2031: 'CCDC112 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
CCDC112 MUTATED 4 1 1
CCDC112 WILD-TYPE 178 132 71
'CCDC112 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.375 (Fisher's exact test), Q value = 0.7

Table S21320.  Gene #2031: 'CCDC112 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
CCDC112 MUTATED 0 2 2 5
CCDC112 WILD-TYPE 112 94 90 181
'CCDC112 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.298 (Fisher's exact test), Q value = 0.63

Table S21321.  Gene #2031: 'CCDC112 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
CCDC112 MUTATED 0 0 2 1 1 1 4
CCDC112 WILD-TYPE 60 50 47 39 62 124 95
'CCDC112 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.844 (Fisher's exact test), Q value = 1

Table S21322.  Gene #2031: 'CCDC112 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
CCDC112 MUTATED 3 1 0 4
CCDC112 WILD-TYPE 127 77 68 192
'CCDC112 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.388 (Fisher's exact test), Q value = 0.72

Table S21323.  Gene #2031: 'CCDC112 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
CCDC112 MUTATED 1 2 1 1 3 0 0 0 0
CCDC112 WILD-TYPE 39 60 27 79 66 48 43 28 74
'TOMM70A MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.122 (Fisher's exact test), Q value = 0.39

Table S21324.  Gene #2032: 'TOMM70A MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
TOMM70A MUTATED 2 0 0 1
TOMM70A WILD-TYPE 44 58 64 42
'TOMM70A MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.255 (Fisher's exact test), Q value = 0.58

Table S21325.  Gene #2032: 'TOMM70A MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
TOMM70A MUTATED 2 1 0
TOMM70A WILD-TYPE 49 82 77
'TOMM70A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.127 (Fisher's exact test), Q value = 0.4

Table S21326.  Gene #2032: 'TOMM70A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
TOMM70A MUTATED 7 1 1 0
TOMM70A WILD-TYPE 171 182 100 20
'TOMM70A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.287 (Fisher's exact test), Q value = 0.62

Table S21327.  Gene #2032: 'TOMM70A MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
TOMM70A MUTATED 3 0 3
TOMM70A WILD-TYPE 84 80 97
'TOMM70A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.32 (Fisher's exact test), Q value = 0.65

Table S21328.  Gene #2032: 'TOMM70A MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
TOMM70A MUTATED 1 3 6
TOMM70A WILD-TYPE 88 157 132
'TOMM70A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.357 (Fisher's exact test), Q value = 0.69

Table S21329.  Gene #2032: 'TOMM70A MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
TOMM70A MUTATED 6 4 0
TOMM70A WILD-TYPE 176 129 72
'TOMM70A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.235 (Fisher's exact test), Q value = 0.56

Table S21330.  Gene #2032: 'TOMM70A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
TOMM70A MUTATED 0 3 3 4
TOMM70A WILD-TYPE 112 93 89 182
'TOMM70A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0189 (Fisher's exact test), Q value = 0.14

Table S21331.  Gene #2032: 'TOMM70A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
TOMM70A MUTATED 0 3 2 1 0 0 4
TOMM70A WILD-TYPE 60 47 47 39 63 125 95

Figure S5193.  Get High-res Image Gene #2032: 'TOMM70A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'TOMM70A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.187 (Fisher's exact test), Q value = 0.49

Table S21332.  Gene #2032: 'TOMM70A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
TOMM70A MUTATED 5 0 0 5
TOMM70A WILD-TYPE 125 78 68 191
'TOMM70A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0897 (Fisher's exact test), Q value = 0.33

Table S21333.  Gene #2032: 'TOMM70A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
TOMM70A MUTATED 0 0 2 1 4 0 2 0 1
TOMM70A WILD-TYPE 40 62 26 79 65 48 41 28 73
'TOMM70A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.255 (Fisher's exact test), Q value = 0.58

Table S21334.  Gene #2032: 'TOMM70A MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
TOMM70A MUTATED 2 0 0 1
TOMM70A WILD-TYPE 31 31 27 18
'TOMM70A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.564 (Fisher's exact test), Q value = 0.87

Table S21335.  Gene #2032: 'TOMM70A MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
TOMM70A MUTATED 3 0 0 0
TOMM70A WILD-TYPE 51 10 24 22
'CDHR3 MUTATION STATUS' versus 'CN_CNMF'

P value = 3e-05 (Fisher's exact test), Q value = 0.0022

Table S21336.  Gene #2033: 'CDHR3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
CDHR3 MUTATED 15 0 0 0
CDHR3 WILD-TYPE 163 183 101 20

Figure S5194.  Get High-res Image Gene #2033: 'CDHR3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'CDHR3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00621 (Fisher's exact test), Q value = 0.072

Table S21337.  Gene #2033: 'CDHR3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
CDHR3 MUTATED 9 0 5
CDHR3 WILD-TYPE 78 80 95

Figure S5195.  Get High-res Image Gene #2033: 'CDHR3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'CDHR3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.105 (Fisher's exact test), Q value = 0.36

Table S21338.  Gene #2033: 'CDHR3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
CDHR3 MUTATED 1 4 9
CDHR3 WILD-TYPE 88 156 129
'CDHR3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.636 (Fisher's exact test), Q value = 0.93

Table S21339.  Gene #2033: 'CDHR3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
CDHR3 MUTATED 8 5 1
CDHR3 WILD-TYPE 174 128 71
'CDHR3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00069 (Fisher's exact test), Q value = 0.019

Table S21340.  Gene #2033: 'CDHR3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
CDHR3 MUTATED 0 7 6 2
CDHR3 WILD-TYPE 112 89 86 184

Figure S5196.  Get High-res Image Gene #2033: 'CDHR3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'CDHR3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 2e-05 (Fisher's exact test), Q value = 0.0017

Table S21341.  Gene #2033: 'CDHR3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
CDHR3 MUTATED 1 2 9 0 1 0 2
CDHR3 WILD-TYPE 59 48 40 40 62 125 97

Figure S5197.  Get High-res Image Gene #2033: 'CDHR3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CDHR3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.134 (Fisher's exact test), Q value = 0.41

Table S21342.  Gene #2033: 'CDHR3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
CDHR3 MUTATED 5 5 0 5
CDHR3 WILD-TYPE 125 73 68 191
'CDHR3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0907 (Fisher's exact test), Q value = 0.33

Table S21343.  Gene #2033: 'CDHR3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
CDHR3 MUTATED 2 5 0 1 5 0 0 0 2
CDHR3 WILD-TYPE 38 57 28 79 64 48 43 28 72
'CDHR3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.147 (Fisher's exact test), Q value = 0.43

Table S21344.  Gene #2033: 'CDHR3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
CDHR3 MUTATED 3 0 0 1
CDHR3 WILD-TYPE 30 31 27 18
'CDHR3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.427 (Fisher's exact test), Q value = 0.75

Table S21345.  Gene #2033: 'CDHR3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
CDHR3 MUTATED 4 0 0 0
CDHR3 WILD-TYPE 50 10 24 22
'ZNF559 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00178 (Fisher's exact test), Q value = 0.035

Table S21346.  Gene #2034: 'ZNF559 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ZNF559 MUTATED 5 0 0 2
ZNF559 WILD-TYPE 41 58 64 41

Figure S5198.  Get High-res Image Gene #2034: 'ZNF559 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'ZNF559 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00763 (Fisher's exact test), Q value = 0.082

Table S21347.  Gene #2034: 'ZNF559 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ZNF559 MUTATED 5 2 0
ZNF559 WILD-TYPE 46 81 77

Figure S5199.  Get High-res Image Gene #2034: 'ZNF559 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'ZNF559 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0234 (Fisher's exact test), Q value = 0.16

Table S21348.  Gene #2034: 'ZNF559 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ZNF559 MUTATED 12 2 2 0
ZNF559 WILD-TYPE 166 181 99 20

Figure S5200.  Get High-res Image Gene #2034: 'ZNF559 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ZNF559 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.195 (Fisher's exact test), Q value = 0.5

Table S21349.  Gene #2034: 'ZNF559 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ZNF559 MUTATED 6 2 2
ZNF559 WILD-TYPE 81 78 98
'ZNF559 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.35 (Fisher's exact test), Q value = 0.68

Table S21350.  Gene #2034: 'ZNF559 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ZNF559 MUTATED 4 4 8
ZNF559 WILD-TYPE 85 156 130
'ZNF559 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.796 (Fisher's exact test), Q value = 1

Table S21351.  Gene #2034: 'ZNF559 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ZNF559 MUTATED 7 5 4
ZNF559 WILD-TYPE 175 128 68
'ZNF559 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.7 (Fisher's exact test), Q value = 0.97

Table S21352.  Gene #2034: 'ZNF559 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ZNF559 MUTATED 2 4 4 6
ZNF559 WILD-TYPE 110 92 88 180
'ZNF559 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.116 (Fisher's exact test), Q value = 0.38

Table S21353.  Gene #2034: 'ZNF559 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ZNF559 MUTATED 1 3 3 0 2 1 6
ZNF559 WILD-TYPE 59 47 46 40 61 124 93
'ZNF559 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.149 (Fisher's exact test), Q value = 0.43

Table S21354.  Gene #2034: 'ZNF559 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ZNF559 MUTATED 3 5 0 7
ZNF559 WILD-TYPE 127 73 68 189
'ZNF559 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.369 (Fisher's exact test), Q value = 0.7

Table S21355.  Gene #2034: 'ZNF559 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ZNF559 MUTATED 2 4 1 1 3 1 0 2 1
ZNF559 WILD-TYPE 38 58 27 79 66 47 43 26 73
'ZNF559 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S21356.  Gene #2034: 'ZNF559 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
ZNF559 MUTATED 1 1 1 1
ZNF559 WILD-TYPE 32 30 26 18
'ZNF559 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.869 (Fisher's exact test), Q value = 1

Table S21357.  Gene #2034: 'ZNF559 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
ZNF559 MUTATED 3 0 1 0
ZNF559 WILD-TYPE 51 10 23 22
'MAK MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0152 (Fisher's exact test), Q value = 0.12

Table S21358.  Gene #2035: 'MAK MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
MAK MUTATED 1 0 0 3
MAK WILD-TYPE 45 58 64 40

Figure S5201.  Get High-res Image Gene #2035: 'MAK MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'MAK MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0395 (Fisher's exact test), Q value = 0.21

Table S21359.  Gene #2035: 'MAK MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
MAK MUTATED 3 0 1
MAK WILD-TYPE 48 83 76

Figure S5202.  Get High-res Image Gene #2035: 'MAK MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'MAK MUTATION STATUS' versus 'CN_CNMF'

P value = 2e-04 (Fisher's exact test), Q value = 0.0083

Table S21360.  Gene #2035: 'MAK MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
MAK MUTATED 11 0 0 1
MAK WILD-TYPE 167 183 101 19

Figure S5203.  Get High-res Image Gene #2035: 'MAK MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'MAK MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.234 (Fisher's exact test), Q value = 0.55

Table S21361.  Gene #2035: 'MAK MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
MAK MUTATED 1 1 5
MAK WILD-TYPE 86 79 95
'MAK MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.809 (Fisher's exact test), Q value = 1

Table S21362.  Gene #2035: 'MAK MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
MAK MUTATED 3 4 5
MAK WILD-TYPE 86 156 133
'MAK MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S21363.  Gene #2035: 'MAK MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
MAK MUTATED 6 4 2
MAK WILD-TYPE 176 129 70
'MAK MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.61 (Fisher's exact test), Q value = 0.91

Table S21364.  Gene #2035: 'MAK MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
MAK MUTATED 1 3 3 5
MAK WILD-TYPE 111 93 89 181
'MAK MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.044 (Fisher's exact test), Q value = 0.22

Table S21365.  Gene #2035: 'MAK MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
MAK MUTATED 2 0 3 1 1 0 5
MAK WILD-TYPE 58 50 46 39 62 125 94

Figure S5204.  Get High-res Image Gene #2035: 'MAK MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'MAK MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.419 (Fisher's exact test), Q value = 0.75

Table S21366.  Gene #2035: 'MAK MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
MAK MUTATED 5 1 0 5
MAK WILD-TYPE 125 77 68 191
'MAK MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00404 (Fisher's exact test), Q value = 0.058

Table S21367.  Gene #2035: 'MAK MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
MAK MUTATED 1 2 2 0 6 0 0 0 0
MAK WILD-TYPE 39 60 26 80 63 48 43 28 74

Figure S5205.  Get High-res Image Gene #2035: 'MAK MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'MAK MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.136 (Fisher's exact test), Q value = 0.41

Table S21368.  Gene #2035: 'MAK MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
MAK MUTATED 1 0 0 2
MAK WILD-TYPE 32 31 27 17
'MAK MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.563 (Fisher's exact test), Q value = 0.87

Table S21369.  Gene #2035: 'MAK MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
MAK MUTATED 3 0 0 0
MAK WILD-TYPE 51 10 24 22
'GPR156 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0013 (Fisher's exact test), Q value = 0.029

Table S21370.  Gene #2036: 'GPR156 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
GPR156 MUTATED 2 0 0 5
GPR156 WILD-TYPE 44 58 64 38

Figure S5206.  Get High-res Image Gene #2036: 'GPR156 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'GPR156 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.105 (Fisher's exact test), Q value = 0.36

Table S21371.  Gene #2036: 'GPR156 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
GPR156 MUTATED 4 1 2
GPR156 WILD-TYPE 47 82 75
'GPR156 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00033 (Fisher's exact test), Q value = 0.012

Table S21372.  Gene #2036: 'GPR156 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
GPR156 MUTATED 13 1 0 0
GPR156 WILD-TYPE 165 182 101 20

Figure S5207.  Get High-res Image Gene #2036: 'GPR156 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'GPR156 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.712 (Fisher's exact test), Q value = 0.98

Table S21373.  Gene #2036: 'GPR156 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
GPR156 MUTATED 3 1 3
GPR156 WILD-TYPE 84 79 97
'GPR156 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.426 (Fisher's exact test), Q value = 0.75

Table S21374.  Gene #2036: 'GPR156 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
GPR156 MUTATED 1 5 6
GPR156 WILD-TYPE 88 155 132
'GPR156 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.211 (Fisher's exact test), Q value = 0.52

Table S21375.  Gene #2036: 'GPR156 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
GPR156 MUTATED 6 6 0
GPR156 WILD-TYPE 176 127 72
'GPR156 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.409 (Fisher's exact test), Q value = 0.74

Table S21376.  Gene #2036: 'GPR156 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
GPR156 MUTATED 1 4 2 7
GPR156 WILD-TYPE 111 92 90 179
'GPR156 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0111 (Fisher's exact test), Q value = 0.1

Table S21377.  Gene #2036: 'GPR156 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
GPR156 MUTATED 1 2 4 0 1 0 6
GPR156 WILD-TYPE 59 48 45 40 62 125 93

Figure S5208.  Get High-res Image Gene #2036: 'GPR156 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'GPR156 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.53 (Fisher's exact test), Q value = 0.85

Table S21378.  Gene #2036: 'GPR156 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
GPR156 MUTATED 4 2 0 7
GPR156 WILD-TYPE 126 76 68 189
'GPR156 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0447 (Fisher's exact test), Q value = 0.22

Table S21379.  Gene #2036: 'GPR156 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
GPR156 MUTATED 0 2 2 0 6 1 1 0 1
GPR156 WILD-TYPE 40 60 26 80 63 47 42 28 73

Figure S5209.  Get High-res Image Gene #2036: 'GPR156 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'NIT2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.192 (Fisher's exact test), Q value = 0.49

Table S21380.  Gene #2037: 'NIT2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
NIT2 MUTATED 0 0 1 2
NIT2 WILD-TYPE 46 58 63 41
'NIT2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.617 (Fisher's exact test), Q value = 0.92

Table S21381.  Gene #2037: 'NIT2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
NIT2 MUTATED 0 1 2
NIT2 WILD-TYPE 51 82 75
'NIT2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.387 (Fisher's exact test), Q value = 0.71

Table S21382.  Gene #2037: 'NIT2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
NIT2 MUTATED 4 1 0 0
NIT2 WILD-TYPE 174 182 101 20
'NIT2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.614 (Fisher's exact test), Q value = 0.91

Table S21383.  Gene #2037: 'NIT2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
NIT2 MUTATED 0 1 2
NIT2 WILD-TYPE 89 159 136
'NIT2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S21384.  Gene #2037: 'NIT2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
NIT2 MUTATED 2 1 0
NIT2 WILD-TYPE 180 132 72
'NIT2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.265 (Fisher's exact test), Q value = 0.59

Table S21385.  Gene #2037: 'NIT2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
NIT2 MUTATED 0 0 2 3
NIT2 WILD-TYPE 112 96 90 183
'NIT2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.934 (Fisher's exact test), Q value = 1

Table S21386.  Gene #2037: 'NIT2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
NIT2 MUTATED 1 0 1 0 1 1 1
NIT2 WILD-TYPE 59 50 48 40 62 124 98
'NIT2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.931 (Fisher's exact test), Q value = 1

Table S21387.  Gene #2037: 'NIT2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
NIT2 MUTATED 1 1 0 3
NIT2 WILD-TYPE 129 77 68 193
'NIT2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.526 (Fisher's exact test), Q value = 0.85

Table S21388.  Gene #2037: 'NIT2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
NIT2 MUTATED 0 2 1 0 1 0 0 0 1
NIT2 WILD-TYPE 40 60 27 80 68 48 43 28 73
'KIAA2018 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0112 (Fisher's exact test), Q value = 0.1

Table S21389.  Gene #2038: 'KIAA2018 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
KIAA2018 MUTATED 3 0 1 5
KIAA2018 WILD-TYPE 43 58 63 38

Figure S5210.  Get High-res Image Gene #2038: 'KIAA2018 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'KIAA2018 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.376 (Fisher's exact test), Q value = 0.71

Table S21390.  Gene #2038: 'KIAA2018 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
KIAA2018 MUTATED 4 3 2
KIAA2018 WILD-TYPE 47 80 75
'KIAA2018 MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S21391.  Gene #2038: 'KIAA2018 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
KIAA2018 MUTATED 19 1 1 0
KIAA2018 WILD-TYPE 159 182 100 20

Figure S5211.  Get High-res Image Gene #2038: 'KIAA2018 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'KIAA2018 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0247 (Fisher's exact test), Q value = 0.16

Table S21392.  Gene #2038: 'KIAA2018 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
KIAA2018 MUTATED 7 0 6
KIAA2018 WILD-TYPE 80 80 94

Figure S5212.  Get High-res Image Gene #2038: 'KIAA2018 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'KIAA2018 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.212 (Fisher's exact test), Q value = 0.52

Table S21393.  Gene #2038: 'KIAA2018 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
KIAA2018 MUTATED 2 6 10
KIAA2018 WILD-TYPE 87 154 128
'KIAA2018 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.37 (Fisher's exact test), Q value = 0.7

Table S21394.  Gene #2038: 'KIAA2018 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
KIAA2018 MUTATED 10 7 1
KIAA2018 WILD-TYPE 172 126 71
'KIAA2018 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00774 (Fisher's exact test), Q value = 0.082

Table S21395.  Gene #2038: 'KIAA2018 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
KIAA2018 MUTATED 0 7 7 8
KIAA2018 WILD-TYPE 112 89 85 178

Figure S5213.  Get High-res Image Gene #2038: 'KIAA2018 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'KIAA2018 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00037 (Fisher's exact test), Q value = 0.013

Table S21396.  Gene #2038: 'KIAA2018 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
KIAA2018 MUTATED 1 1 9 1 2 1 7
KIAA2018 WILD-TYPE 59 49 40 39 61 124 92

Figure S5214.  Get High-res Image Gene #2038: 'KIAA2018 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'KIAA2018 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.11 (Fisher's exact test), Q value = 0.37

Table S21397.  Gene #2038: 'KIAA2018 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
KIAA2018 MUTATED 5 6 0 10
KIAA2018 WILD-TYPE 125 72 68 186
'KIAA2018 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0051 (Fisher's exact test), Q value = 0.064

Table S21398.  Gene #2038: 'KIAA2018 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
KIAA2018 MUTATED 1 7 1 1 8 0 0 0 3
KIAA2018 WILD-TYPE 39 55 27 79 61 48 43 28 71

Figure S5215.  Get High-res Image Gene #2038: 'KIAA2018 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'KIAA2018 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0136 (Fisher's exact test), Q value = 0.11

Table S21399.  Gene #2038: 'KIAA2018 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
KIAA2018 MUTATED 0 1 0 3
KIAA2018 WILD-TYPE 33 30 27 16

Figure S5216.  Get High-res Image Gene #2038: 'KIAA2018 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'KIAA2018 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.22 (Fisher's exact test), Q value = 0.53

Table S21400.  Gene #2038: 'KIAA2018 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
KIAA2018 MUTATED 3 1 0 0
KIAA2018 WILD-TYPE 51 9 24 22
'DCAF12L2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.316 (Fisher's exact test), Q value = 0.64

Table S21401.  Gene #2039: 'DCAF12L2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
DCAF12L2 MUTATED 1 2 0 2
DCAF12L2 WILD-TYPE 45 56 64 41
'DCAF12L2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.214 (Fisher's exact test), Q value = 0.52

Table S21402.  Gene #2039: 'DCAF12L2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
DCAF12L2 MUTATED 2 3 0
DCAF12L2 WILD-TYPE 49 80 77
'DCAF12L2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.295 (Fisher's exact test), Q value = 0.62

Table S21403.  Gene #2039: 'DCAF12L2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
DCAF12L2 MUTATED 11 6 2 1
DCAF12L2 WILD-TYPE 167 177 99 19
'DCAF12L2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.618 (Fisher's exact test), Q value = 0.92

Table S21404.  Gene #2039: 'DCAF12L2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
DCAF12L2 MUTATED 4 4 8
DCAF12L2 WILD-TYPE 83 76 92
'DCAF12L2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.803 (Fisher's exact test), Q value = 1

Table S21405.  Gene #2039: 'DCAF12L2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
DCAF12L2 MUTATED 3 6 7
DCAF12L2 WILD-TYPE 86 154 131
'DCAF12L2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.944 (Fisher's exact test), Q value = 1

Table S21406.  Gene #2039: 'DCAF12L2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
DCAF12L2 MUTATED 7 6 3
DCAF12L2 WILD-TYPE 175 127 69
'DCAF12L2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.187 (Fisher's exact test), Q value = 0.49

Table S21407.  Gene #2039: 'DCAF12L2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
DCAF12L2 MUTATED 5 4 7 4
DCAF12L2 WILD-TYPE 107 92 85 182
'DCAF12L2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0679 (Fisher's exact test), Q value = 0.28

Table S21408.  Gene #2039: 'DCAF12L2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
DCAF12L2 MUTATED 1 2 6 2 4 2 3
DCAF12L2 WILD-TYPE 59 48 43 38 59 123 96
'DCAF12L2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0943 (Fisher's exact test), Q value = 0.34

Table S21409.  Gene #2039: 'DCAF12L2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
DCAF12L2 MUTATED 10 4 1 5
DCAF12L2 WILD-TYPE 120 74 67 191
'DCAF12L2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.141 (Fisher's exact test), Q value = 0.42

Table S21410.  Gene #2039: 'DCAF12L2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
DCAF12L2 MUTATED 4 4 2 1 5 2 0 0 2
DCAF12L2 WILD-TYPE 36 58 26 79 64 46 43 28 72
'DCAF12L2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.869 (Fisher's exact test), Q value = 1

Table S21411.  Gene #2039: 'DCAF12L2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
DCAF12L2 MUTATED 2 2 1 2
DCAF12L2 WILD-TYPE 31 29 26 17
'DCAF12L2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.885 (Fisher's exact test), Q value = 1

Table S21412.  Gene #2039: 'DCAF12L2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
DCAF12L2 MUTATED 5 0 1 1
DCAF12L2 WILD-TYPE 49 10 23 21
'BMP10 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.611 (Fisher's exact test), Q value = 0.91

Table S21413.  Gene #2040: 'BMP10 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
BMP10 MUTATED 2 1 1 0
BMP10 WILD-TYPE 44 57 63 43
'BMP10 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.233 (Fisher's exact test), Q value = 0.55

Table S21414.  Gene #2040: 'BMP10 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
BMP10 MUTATED 2 2 0
BMP10 WILD-TYPE 49 81 77
'BMP10 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.256 (Fisher's exact test), Q value = 0.58

Table S21415.  Gene #2040: 'BMP10 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
BMP10 MUTATED 8 4 1 1
BMP10 WILD-TYPE 170 179 100 19
'BMP10 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S21416.  Gene #2040: 'BMP10 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
BMP10 MUTATED 3 3 4
BMP10 WILD-TYPE 84 77 96
'BMP10 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.171 (Fisher's exact test), Q value = 0.47

Table S21417.  Gene #2040: 'BMP10 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
BMP10 MUTATED 2 2 7
BMP10 WILD-TYPE 87 158 131
'BMP10 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.51 (Fisher's exact test), Q value = 0.83

Table S21418.  Gene #2040: 'BMP10 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
BMP10 MUTATED 7 2 2
BMP10 WILD-TYPE 175 131 70
'BMP10 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.28 (Fisher's exact test), Q value = 0.61

Table S21419.  Gene #2040: 'BMP10 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
BMP10 MUTATED 4 1 5 4
BMP10 WILD-TYPE 108 95 87 182
'BMP10 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.105 (Fisher's exact test), Q value = 0.36

Table S21420.  Gene #2040: 'BMP10 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
BMP10 MUTATED 5 0 2 0 3 2 2
BMP10 WILD-TYPE 55 50 47 40 60 123 97
'BMP10 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.047 (Fisher's exact test), Q value = 0.23

Table S21421.  Gene #2040: 'BMP10 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
BMP10 MUTATED 4 3 5 2
BMP10 WILD-TYPE 126 75 63 194

Figure S5217.  Get High-res Image Gene #2040: 'BMP10 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'BMP10 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.629 (Fisher's exact test), Q value = 0.93

Table S21422.  Gene #2040: 'BMP10 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
BMP10 MUTATED 3 2 0 2 3 0 2 0 2
BMP10 WILD-TYPE 37 60 28 78 66 48 41 28 72
'BMP10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.226 (Fisher's exact test), Q value = 0.54

Table S21423.  Gene #2040: 'BMP10 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
BMP10 MUTATED 1 0 2 2
BMP10 WILD-TYPE 32 31 25 17
'BMP10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.188 (Fisher's exact test), Q value = 0.49

Table S21424.  Gene #2040: 'BMP10 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
BMP10 MUTATED 2 0 3 0
BMP10 WILD-TYPE 52 10 21 22
'FOXO4 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.628 (Fisher's exact test), Q value = 0.92

Table S21425.  Gene #2041: 'FOXO4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
FOXO4 MUTATED 1 1 0 1
FOXO4 WILD-TYPE 45 57 64 42
'FOXO4 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S21426.  Gene #2041: 'FOXO4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
FOXO4 MUTATED 1 1 1
FOXO4 WILD-TYPE 50 82 76
'FOXO4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00859 (Fisher's exact test), Q value = 0.086

Table S21427.  Gene #2041: 'FOXO4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
FOXO4 MUTATED 11 1 1 0
FOXO4 WILD-TYPE 167 182 100 20

Figure S5218.  Get High-res Image Gene #2041: 'FOXO4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'FOXO4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0324 (Fisher's exact test), Q value = 0.18

Table S21428.  Gene #2041: 'FOXO4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
FOXO4 MUTATED 2 0 7
FOXO4 WILD-TYPE 85 80 93

Figure S5219.  Get High-res Image Gene #2041: 'FOXO4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'FOXO4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S21429.  Gene #2041: 'FOXO4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
FOXO4 MUTATED 3 5 5
FOXO4 WILD-TYPE 86 155 133
'FOXO4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S21430.  Gene #2041: 'FOXO4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
FOXO4 MUTATED 6 5 2
FOXO4 WILD-TYPE 176 128 70
'FOXO4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0749 (Fisher's exact test), Q value = 0.29

Table S21431.  Gene #2041: 'FOXO4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
FOXO4 MUTATED 2 6 3 2
FOXO4 WILD-TYPE 110 90 89 184
'FOXO4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0282 (Fisher's exact test), Q value = 0.17

Table S21432.  Gene #2041: 'FOXO4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
FOXO4 MUTATED 2 2 5 0 2 1 1
FOXO4 WILD-TYPE 58 48 44 40 61 124 98

Figure S5220.  Get High-res Image Gene #2041: 'FOXO4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'FOXO4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.51 (Fisher's exact test), Q value = 0.83

Table S21433.  Gene #2041: 'FOXO4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
FOXO4 MUTATED 4 3 0 5
FOXO4 WILD-TYPE 126 75 68 191
'FOXO4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0224 (Fisher's exact test), Q value = 0.15

Table S21434.  Gene #2041: 'FOXO4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
FOXO4 MUTATED 0 3 1 0 4 0 3 1 0
FOXO4 WILD-TYPE 40 59 27 80 65 48 40 27 74

Figure S5221.  Get High-res Image Gene #2041: 'FOXO4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'SLITRK2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00711 (Fisher's exact test), Q value = 0.078

Table S21435.  Gene #2042: 'SLITRK2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
SLITRK2 MUTATED 4 0 1 5
SLITRK2 WILD-TYPE 42 58 63 38

Figure S5222.  Get High-res Image Gene #2042: 'SLITRK2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'SLITRK2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0249 (Fisher's exact test), Q value = 0.16

Table S21436.  Gene #2042: 'SLITRK2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
SLITRK2 MUTATED 6 1 3
SLITRK2 WILD-TYPE 45 82 74

Figure S5223.  Get High-res Image Gene #2042: 'SLITRK2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'SLITRK2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0212 (Fisher's exact test), Q value = 0.15

Table S21437.  Gene #2042: 'SLITRK2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
SLITRK2 MUTATED 17 6 2 1
SLITRK2 WILD-TYPE 161 177 99 19

Figure S5224.  Get High-res Image Gene #2042: 'SLITRK2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'SLITRK2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0524 (Fisher's exact test), Q value = 0.25

Table S21438.  Gene #2042: 'SLITRK2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
SLITRK2 MUTATED 9 5 2
SLITRK2 WILD-TYPE 78 75 98
'SLITRK2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.665 (Fisher's exact test), Q value = 0.95

Table S21439.  Gene #2042: 'SLITRK2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
SLITRK2 MUTATED 4 8 10
SLITRK2 WILD-TYPE 85 152 128
'SLITRK2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.741 (Fisher's exact test), Q value = 1

Table S21440.  Gene #2042: 'SLITRK2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
SLITRK2 MUTATED 9 8 5
SLITRK2 WILD-TYPE 173 125 67
'SLITRK2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.238 (Fisher's exact test), Q value = 0.56

Table S21441.  Gene #2042: 'SLITRK2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
SLITRK2 MUTATED 5 2 8 11
SLITRK2 WILD-TYPE 107 94 84 175
'SLITRK2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 3e-05 (Fisher's exact test), Q value = 0.0022

Table S21442.  Gene #2042: 'SLITRK2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
SLITRK2 MUTATED 6 0 7 0 3 0 10
SLITRK2 WILD-TYPE 54 50 42 40 60 125 89

Figure S5225.  Get High-res Image Gene #2042: 'SLITRK2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'SLITRK2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.427 (Fisher's exact test), Q value = 0.75

Table S21443.  Gene #2042: 'SLITRK2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
SLITRK2 MUTATED 7 5 1 13
SLITRK2 WILD-TYPE 123 73 67 183
'SLITRK2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.154 (Fisher's exact test), Q value = 0.44

Table S21444.  Gene #2042: 'SLITRK2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
SLITRK2 MUTATED 1 6 3 3 8 1 1 1 2
SLITRK2 WILD-TYPE 39 56 25 77 61 47 42 27 72
'SLITRK2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0868 (Fisher's exact test), Q value = 0.32

Table S21445.  Gene #2042: 'SLITRK2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
SLITRK2 MUTATED 1 1 0 3
SLITRK2 WILD-TYPE 32 30 27 16
'SLITRK2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.381 (Fisher's exact test), Q value = 0.71

Table S21446.  Gene #2042: 'SLITRK2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
SLITRK2 MUTATED 2 1 2 0
SLITRK2 WILD-TYPE 52 9 22 22
'MTF2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00792 (Fisher's exact test), Q value = 0.083

Table S21447.  Gene #2043: 'MTF2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
MTF2 MUTATED 0 0 0 3
MTF2 WILD-TYPE 46 58 64 40

Figure S5226.  Get High-res Image Gene #2043: 'MTF2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'MTF2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S21448.  Gene #2043: 'MTF2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
MTF2 MUTATED 1 1 1
MTF2 WILD-TYPE 50 82 76
'MTF2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00172 (Fisher's exact test), Q value = 0.034

Table S21449.  Gene #2043: 'MTF2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
MTF2 MUTATED 9 0 0 0
MTF2 WILD-TYPE 169 183 101 20

Figure S5227.  Get High-res Image Gene #2043: 'MTF2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'MTF2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.289 (Fisher's exact test), Q value = 0.62

Table S21450.  Gene #2043: 'MTF2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
MTF2 MUTATED 3 0 3
MTF2 WILD-TYPE 84 80 97
'MTF2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.261 (Fisher's exact test), Q value = 0.58

Table S21451.  Gene #2043: 'MTF2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
MTF2 MUTATED 0 5 4
MTF2 WILD-TYPE 89 155 134
'MTF2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0313 (Fisher's exact test), Q value = 0.18

Table S21452.  Gene #2043: 'MTF2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
MTF2 MUTATED 2 7 0
MTF2 WILD-TYPE 180 126 72

Figure S5228.  Get High-res Image Gene #2043: 'MTF2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'MTF2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.671 (Fisher's exact test), Q value = 0.95

Table S21453.  Gene #2043: 'MTF2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
MTF2 MUTATED 1 3 1 4
MTF2 WILD-TYPE 111 93 91 182
'MTF2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0799 (Fisher's exact test), Q value = 0.3

Table S21454.  Gene #2043: 'MTF2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
MTF2 MUTATED 2 2 2 0 0 0 3
MTF2 WILD-TYPE 58 48 47 40 63 125 96
'MTF2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.844 (Fisher's exact test), Q value = 1

Table S21455.  Gene #2043: 'MTF2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
MTF2 MUTATED 3 1 0 4
MTF2 WILD-TYPE 127 77 68 192
'MTF2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.721 (Fisher's exact test), Q value = 0.99

Table S21456.  Gene #2043: 'MTF2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
MTF2 MUTATED 1 1 1 0 2 1 0 0 2
MTF2 WILD-TYPE 39 61 27 80 67 47 43 28 72
'UBA7 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.31 (Fisher's exact test), Q value = 0.64

Table S21457.  Gene #2044: 'UBA7 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
UBA7 MUTATED 1 1 0 2
UBA7 WILD-TYPE 45 57 64 41
'UBA7 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.232 (Fisher's exact test), Q value = 0.55

Table S21458.  Gene #2044: 'UBA7 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
UBA7 MUTATED 2 2 0
UBA7 WILD-TYPE 49 81 77
'UBA7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.226 (Fisher's exact test), Q value = 0.54

Table S21459.  Gene #2044: 'UBA7 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
UBA7 MUTATED 8 2 2 0
UBA7 WILD-TYPE 170 181 99 20
'UBA7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.145 (Fisher's exact test), Q value = 0.42

Table S21460.  Gene #2044: 'UBA7 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
UBA7 MUTATED 4 0 4
UBA7 WILD-TYPE 83 80 96
'UBA7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.714 (Fisher's exact test), Q value = 0.98

Table S21461.  Gene #2044: 'UBA7 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
UBA7 MUTATED 1 5 4
UBA7 WILD-TYPE 88 155 134
'UBA7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.641 (Fisher's exact test), Q value = 0.93

Table S21462.  Gene #2044: 'UBA7 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
UBA7 MUTATED 4 5 1
UBA7 WILD-TYPE 178 128 71
'UBA7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.578 (Fisher's exact test), Q value = 0.88

Table S21463.  Gene #2044: 'UBA7 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
UBA7 MUTATED 3 4 1 4
UBA7 WILD-TYPE 109 92 91 182
'UBA7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.216 (Fisher's exact test), Q value = 0.53

Table S21464.  Gene #2044: 'UBA7 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
UBA7 MUTATED 2 1 3 1 0 1 4
UBA7 WILD-TYPE 58 49 46 39 63 124 95
'UBA7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.417 (Fisher's exact test), Q value = 0.74

Table S21465.  Gene #2044: 'UBA7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
UBA7 MUTATED 4 1 2 2
UBA7 WILD-TYPE 126 77 66 194
'UBA7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.103 (Fisher's exact test), Q value = 0.36

Table S21466.  Gene #2044: 'UBA7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
UBA7 MUTATED 0 1 3 0 2 1 1 0 1
UBA7 WILD-TYPE 40 61 25 80 67 47 42 28 73
'UBA7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.782 (Fisher's exact test), Q value = 1

Table S21467.  Gene #2044: 'UBA7 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
UBA7 MUTATED 1 0 1 1
UBA7 WILD-TYPE 32 31 26 18
'UBA7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.141 (Fisher's exact test), Q value = 0.42

Table S21468.  Gene #2044: 'UBA7 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
UBA7 MUTATED 0 0 2 1
UBA7 WILD-TYPE 54 10 22 21
'MICAL1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00163 (Fisher's exact test), Q value = 0.033

Table S21469.  Gene #2045: 'MICAL1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
MICAL1 MUTATED 9 0 0 0
MICAL1 WILD-TYPE 169 183 101 20

Figure S5229.  Get High-res Image Gene #2045: 'MICAL1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'MICAL1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.179 (Fisher's exact test), Q value = 0.48

Table S21470.  Gene #2045: 'MICAL1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
MICAL1 MUTATED 4 0 3
MICAL1 WILD-TYPE 83 80 97
'MICAL1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.27 (Fisher's exact test), Q value = 0.59

Table S21471.  Gene #2045: 'MICAL1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
MICAL1 MUTATED 2 1 4
MICAL1 WILD-TYPE 87 159 134
'MICAL1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S21472.  Gene #2045: 'MICAL1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
MICAL1 MUTATED 4 2 1
MICAL1 WILD-TYPE 178 131 71
'MICAL1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0589 (Fisher's exact test), Q value = 0.27

Table S21473.  Gene #2045: 'MICAL1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
MICAL1 MUTATED 0 4 3 2
MICAL1 WILD-TYPE 112 92 89 184
'MICAL1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00065 (Fisher's exact test), Q value = 0.018

Table S21474.  Gene #2045: 'MICAL1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
MICAL1 MUTATED 0 2 5 0 0 0 2
MICAL1 WILD-TYPE 60 48 44 40 63 125 97

Figure S5230.  Get High-res Image Gene #2045: 'MICAL1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'MICAL1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.602 (Fisher's exact test), Q value = 0.91

Table S21475.  Gene #2045: 'MICAL1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
MICAL1 MUTATED 4 1 0 4
MICAL1 WILD-TYPE 126 77 68 192
'MICAL1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0156 (Fisher's exact test), Q value = 0.12

Table S21476.  Gene #2045: 'MICAL1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
MICAL1 MUTATED 1 3 0 0 5 0 0 0 0
MICAL1 WILD-TYPE 39 59 28 80 64 48 43 28 74

Figure S5231.  Get High-res Image Gene #2045: 'MICAL1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'MICAL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.136 (Fisher's exact test), Q value = 0.41

Table S21477.  Gene #2045: 'MICAL1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
MICAL1 MUTATED 1 0 0 2
MICAL1 WILD-TYPE 32 31 27 17
'MICAL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.447 (Fisher's exact test), Q value = 0.77

Table S21478.  Gene #2045: 'MICAL1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
MICAL1 MUTATED 1 0 2 0
MICAL1 WILD-TYPE 53 10 22 22
'TSPYL4 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.121 (Fisher's exact test), Q value = 0.39

Table S21479.  Gene #2046: 'TSPYL4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
TSPYL4 MUTATED 2 0 0 1
TSPYL4 WILD-TYPE 44 58 64 42
'TSPYL4 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.252 (Fisher's exact test), Q value = 0.58

Table S21480.  Gene #2046: 'TSPYL4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
TSPYL4 MUTATED 2 1 0
TSPYL4 WILD-TYPE 49 82 77
'TSPYL4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.12 (Fisher's exact test), Q value = 0.39

Table S21481.  Gene #2046: 'TSPYL4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
TSPYL4 MUTATED 4 0 0 0
TSPYL4 WILD-TYPE 174 183 101 20
'TSPYL4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0562 (Fisher's exact test), Q value = 0.26

Table S21482.  Gene #2046: 'TSPYL4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
TSPYL4 MUTATED 0 0 3
TSPYL4 WILD-TYPE 89 160 135
'TSPYL4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S21483.  Gene #2046: 'TSPYL4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
TSPYL4 MUTATED 2 1 0
TSPYL4 WILD-TYPE 180 132 72
'TSPYL4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.461 (Fisher's exact test), Q value = 0.79

Table S21484.  Gene #2046: 'TSPYL4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
TSPYL4 MUTATED 0 0 1 3
TSPYL4 WILD-TYPE 112 96 91 183
'TSPYL4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.725 (Fisher's exact test), Q value = 0.99

Table S21485.  Gene #2046: 'TSPYL4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
TSPYL4 MUTATED 0 0 1 0 0 1 2
TSPYL4 WILD-TYPE 60 50 48 40 63 124 97
'TSPYL4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.55 (Fisher's exact test), Q value = 0.87

Table S21486.  Gene #2046: 'TSPYL4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
TSPYL4 MUTATED 0 1 0 2
TSPYL4 WILD-TYPE 130 77 68 194
'TSPYL4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.469 (Fisher's exact test), Q value = 0.8

Table S21487.  Gene #2046: 'TSPYL4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
TSPYL4 MUTATED 0 1 0 1 0 0 0 1 0
TSPYL4 WILD-TYPE 40 61 28 79 69 48 43 27 74
'ZNF41 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0406 (Fisher's exact test), Q value = 0.21

Table S21488.  Gene #2047: 'ZNF41 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ZNF41 MUTATED 0 1 0 3
ZNF41 WILD-TYPE 46 57 64 40

Figure S5232.  Get High-res Image Gene #2047: 'ZNF41 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'ZNF41 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.679 (Fisher's exact test), Q value = 0.96

Table S21489.  Gene #2047: 'ZNF41 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ZNF41 MUTATED 0 2 2
ZNF41 WILD-TYPE 51 81 75
'ZNF41 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.263 (Fisher's exact test), Q value = 0.59

Table S21490.  Gene #2047: 'ZNF41 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ZNF41 MUTATED 6 5 0 0
ZNF41 WILD-TYPE 172 178 101 20
'ZNF41 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S21491.  Gene #2047: 'ZNF41 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ZNF41 MUTATED 2 2 3
ZNF41 WILD-TYPE 85 78 97
'ZNF41 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.277 (Fisher's exact test), Q value = 0.6

Table S21492.  Gene #2047: 'ZNF41 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ZNF41 MUTATED 0 5 3
ZNF41 WILD-TYPE 89 155 135
'ZNF41 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.159 (Fisher's exact test), Q value = 0.45

Table S21493.  Gene #2047: 'ZNF41 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ZNF41 MUTATED 3 5 0
ZNF41 WILD-TYPE 179 128 72
'ZNF41 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.827 (Fisher's exact test), Q value = 1

Table S21494.  Gene #2047: 'ZNF41 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ZNF41 MUTATED 2 3 1 5
ZNF41 WILD-TYPE 110 93 91 181
'ZNF41 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.874 (Fisher's exact test), Q value = 1

Table S21495.  Gene #2047: 'ZNF41 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ZNF41 MUTATED 3 1 1 1 1 2 2
ZNF41 WILD-TYPE 57 49 48 39 62 123 97
'ZNF41 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.42 (Fisher's exact test), Q value = 0.75

Table S21496.  Gene #2047: 'ZNF41 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ZNF41 MUTATED 5 1 0 5
ZNF41 WILD-TYPE 125 77 68 191
'ZNF41 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.439 (Fisher's exact test), Q value = 0.77

Table S21497.  Gene #2047: 'ZNF41 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ZNF41 MUTATED 3 1 1 1 3 1 0 0 1
ZNF41 WILD-TYPE 37 61 27 79 66 47 43 28 73
'ZNF41 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0845 (Fisher's exact test), Q value = 0.31

Table S21498.  Gene #2047: 'ZNF41 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
ZNF41 MUTATED 0 1 0 2
ZNF41 WILD-TYPE 33 30 27 17
'ZNF41 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0846 (Fisher's exact test), Q value = 0.31

Table S21499.  Gene #2047: 'ZNF41 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
ZNF41 MUTATED 0 1 1 1
ZNF41 WILD-TYPE 54 9 23 21
'SLC26A7 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.201 (Fisher's exact test), Q value = 0.51

Table S21500.  Gene #2048: 'SLC26A7 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
SLC26A7 MUTATED 2 1 1 4
SLC26A7 WILD-TYPE 44 57 63 39
'SLC26A7 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.308 (Fisher's exact test), Q value = 0.64

Table S21501.  Gene #2048: 'SLC26A7 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
SLC26A7 MUTATED 4 2 2
SLC26A7 WILD-TYPE 47 81 75
'SLC26A7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.111 (Fisher's exact test), Q value = 0.37

Table S21502.  Gene #2048: 'SLC26A7 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
SLC26A7 MUTATED 11 3 3 1
SLC26A7 WILD-TYPE 167 180 98 19
'SLC26A7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0551 (Fisher's exact test), Q value = 0.26

Table S21503.  Gene #2048: 'SLC26A7 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
SLC26A7 MUTATED 6 0 4
SLC26A7 WILD-TYPE 81 80 96
'SLC26A7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.213 (Fisher's exact test), Q value = 0.52

Table S21504.  Gene #2048: 'SLC26A7 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
SLC26A7 MUTATED 1 6 8
SLC26A7 WILD-TYPE 88 154 130
'SLC26A7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.572 (Fisher's exact test), Q value = 0.88

Table S21505.  Gene #2048: 'SLC26A7 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
SLC26A7 MUTATED 8 6 1
SLC26A7 WILD-TYPE 174 127 71
'SLC26A7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.262 (Fisher's exact test), Q value = 0.59

Table S21506.  Gene #2048: 'SLC26A7 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
SLC26A7 MUTATED 1 5 4 8
SLC26A7 WILD-TYPE 111 91 88 178
'SLC26A7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0041 (Fisher's exact test), Q value = 0.058

Table S21507.  Gene #2048: 'SLC26A7 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
SLC26A7 MUTATED 0 2 5 0 2 1 8
SLC26A7 WILD-TYPE 60 48 44 40 61 124 91

Figure S5233.  Get High-res Image Gene #2048: 'SLC26A7 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'SLC26A7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.346 (Fisher's exact test), Q value = 0.67

Table S21508.  Gene #2048: 'SLC26A7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
SLC26A7 MUTATED 5 3 0 9
SLC26A7 WILD-TYPE 125 75 68 187
'SLC26A7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.13 (Fisher's exact test), Q value = 0.4

Table S21509.  Gene #2048: 'SLC26A7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
SLC26A7 MUTATED 2 4 1 0 5 1 0 0 4
SLC26A7 WILD-TYPE 38 58 27 80 64 47 43 28 70
'SLC26A7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0843 (Fisher's exact test), Q value = 0.31

Table S21510.  Gene #2048: 'SLC26A7 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
SLC26A7 MUTATED 0 1 0 2
SLC26A7 WILD-TYPE 33 30 27 17
'SLC26A7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.311 (Fisher's exact test), Q value = 0.64

Table S21511.  Gene #2048: 'SLC26A7 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
SLC26A7 MUTATED 1 1 1 0
SLC26A7 WILD-TYPE 53 9 23 22
'ARMC2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.374 (Fisher's exact test), Q value = 0.7

Table S21512.  Gene #2049: 'ARMC2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ARMC2 MUTATED 2 1 0 1
ARMC2 WILD-TYPE 44 57 64 42
'ARMC2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.556 (Fisher's exact test), Q value = 0.87

Table S21513.  Gene #2049: 'ARMC2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ARMC2 MUTATED 2 1 1
ARMC2 WILD-TYPE 49 82 76
'ARMC2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0665 (Fisher's exact test), Q value = 0.28

Table S21514.  Gene #2049: 'ARMC2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ARMC2 MUTATED 6 0 2 0
ARMC2 WILD-TYPE 172 183 99 20
'ARMC2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.556 (Fisher's exact test), Q value = 0.87

Table S21515.  Gene #2049: 'ARMC2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ARMC2 MUTATED 2 0 2
ARMC2 WILD-TYPE 85 80 98
'ARMC2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.374 (Fisher's exact test), Q value = 0.7

Table S21516.  Gene #2049: 'ARMC2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ARMC2 MUTATED 0 2 3
ARMC2 WILD-TYPE 89 158 135
'ARMC2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.717 (Fisher's exact test), Q value = 0.99

Table S21517.  Gene #2049: 'ARMC2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ARMC2 MUTATED 3 2 0
ARMC2 WILD-TYPE 179 131 72
'ARMC2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0724 (Fisher's exact test), Q value = 0.29

Table S21518.  Gene #2049: 'ARMC2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ARMC2 MUTATED 0 0 3 5
ARMC2 WILD-TYPE 112 96 89 181
'ARMC2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.158 (Fisher's exact test), Q value = 0.45

Table S21519.  Gene #2049: 'ARMC2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ARMC2 MUTATED 1 0 3 0 0 1 3
ARMC2 WILD-TYPE 59 50 46 40 63 124 96
'ARMC2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.735 (Fisher's exact test), Q value = 1

Table S21520.  Gene #2049: 'ARMC2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ARMC2 MUTATED 2 1 0 5
ARMC2 WILD-TYPE 128 77 68 191
'ARMC2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.788 (Fisher's exact test), Q value = 1

Table S21521.  Gene #2049: 'ARMC2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ARMC2 MUTATED 0 2 0 1 3 0 1 0 1
ARMC2 WILD-TYPE 40 60 28 79 66 48 42 28 73
'ARMC2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00412 (Fisher's exact test), Q value = 0.059

Table S21522.  Gene #2049: 'ARMC2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
ARMC2 MUTATED 0 0 0 3
ARMC2 WILD-TYPE 33 31 27 16

Figure S5234.  Get High-res Image Gene #2049: 'ARMC2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'ARMC2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.562 (Fisher's exact test), Q value = 0.87

Table S21523.  Gene #2049: 'ARMC2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
ARMC2 MUTATED 3 0 0 0
ARMC2 WILD-TYPE 51 10 24 22
'RAGE MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.19 (Fisher's exact test), Q value = 0.49

Table S21524.  Gene #2050: 'RAGE MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
RAGE MUTATED 0 0 1 2
RAGE WILD-TYPE 46 58 63 41
'RAGE MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.46 (Fisher's exact test), Q value = 0.79

Table S21525.  Gene #2050: 'RAGE MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
RAGE MUTATED 1 2 0
RAGE WILD-TYPE 50 81 77
'RAGE MUTATION STATUS' versus 'CN_CNMF'

P value = 0.443 (Fisher's exact test), Q value = 0.77

Table S21526.  Gene #2050: 'RAGE MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
RAGE MUTATED 4 2 2 1
RAGE WILD-TYPE 174 181 99 19
'RAGE MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.682 (Fisher's exact test), Q value = 0.96

Table S21527.  Gene #2050: 'RAGE MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
RAGE MUTATED 3 1 2
RAGE WILD-TYPE 84 79 98
'RAGE MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.152 (Fisher's exact test), Q value = 0.44

Table S21528.  Gene #2050: 'RAGE MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
RAGE MUTATED 2 1 5
RAGE WILD-TYPE 87 159 133
'RAGE MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.895 (Fisher's exact test), Q value = 1

Table S21529.  Gene #2050: 'RAGE MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
RAGE MUTATED 5 2 1
RAGE WILD-TYPE 177 131 71
'RAGE MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.138 (Fisher's exact test), Q value = 0.41

Table S21530.  Gene #2050: 'RAGE MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
RAGE MUTATED 0 4 2 3
RAGE WILD-TYPE 112 92 90 183
'RAGE MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.357 (Fisher's exact test), Q value = 0.69

Table S21531.  Gene #2050: 'RAGE MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
RAGE MUTATED 0 1 2 2 1 1 2
RAGE WILD-TYPE 60 49 47 38 62 124 97
'RAGE MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.31 (Fisher's exact test), Q value = 0.64

Table S21532.  Gene #2050: 'RAGE MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
RAGE MUTATED 5 1 0 3
RAGE WILD-TYPE 125 77 68 193
'RAGE MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.483 (Fisher's exact test), Q value = 0.81

Table S21533.  Gene #2050: 'RAGE MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
RAGE MUTATED 1 2 1 1 2 0 2 0 0
RAGE WILD-TYPE 39 60 27 79 67 48 41 28 74
'RAGE MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0658 (Fisher's exact test), Q value = 0.28

Table S21534.  Gene #2050: 'RAGE MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
RAGE MUTATED 0 2 0 2
RAGE WILD-TYPE 33 29 27 17
'RAGE MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.43 (Fisher's exact test), Q value = 0.76

Table S21535.  Gene #2050: 'RAGE MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
RAGE MUTATED 4 0 0 0
RAGE WILD-TYPE 50 10 24 22
'TNNT2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.626 (Fisher's exact test), Q value = 0.92

Table S21536.  Gene #2051: 'TNNT2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
TNNT2 MUTATED 1 1 0 1
TNNT2 WILD-TYPE 45 57 64 42
'TNNT2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.252 (Fisher's exact test), Q value = 0.58

Table S21537.  Gene #2051: 'TNNT2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
TNNT2 MUTATED 2 1 0
TNNT2 WILD-TYPE 49 82 77
'TNNT2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0608 (Fisher's exact test), Q value = 0.27

Table S21538.  Gene #2051: 'TNNT2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
TNNT2 MUTATED 7 1 0 0
TNNT2 WILD-TYPE 171 182 101 20
'TNNT2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.325 (Fisher's exact test), Q value = 0.65

Table S21539.  Gene #2051: 'TNNT2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
TNNT2 MUTATED 3 0 2
TNNT2 WILD-TYPE 84 80 98
'TNNT2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.544 (Fisher's exact test), Q value = 0.86

Table S21540.  Gene #2051: 'TNNT2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
TNNT2 MUTATED 1 1 3
TNNT2 WILD-TYPE 88 159 135
'TNNT2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.213 (Fisher's exact test), Q value = 0.52

Table S21541.  Gene #2051: 'TNNT2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
TNNT2 MUTATED 4 0 1
TNNT2 WILD-TYPE 178 133 71
'TNNT2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.291 (Fisher's exact test), Q value = 0.62

Table S21542.  Gene #2051: 'TNNT2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
TNNT2 MUTATED 0 3 2 3
TNNT2 WILD-TYPE 112 93 90 183
'TNNT2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0954 (Fisher's exact test), Q value = 0.34

Table S21543.  Gene #2051: 'TNNT2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
TNNT2 MUTATED 0 2 3 0 0 1 2
TNNT2 WILD-TYPE 60 48 46 40 63 124 97
'TNNT2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.382 (Fisher's exact test), Q value = 0.71

Table S21544.  Gene #2051: 'TNNT2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
TNNT2 MUTATED 4 1 0 2
TNNT2 WILD-TYPE 126 77 68 194
'TNNT2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.654 (Fisher's exact test), Q value = 0.94

Table S21545.  Gene #2051: 'TNNT2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
TNNT2 MUTATED 1 1 1 2 2 0 0 0 0
TNNT2 WILD-TYPE 39 61 27 78 67 48 43 28 74
'CDH8 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00058 (Fisher's exact test), Q value = 0.017

Table S21546.  Gene #2052: 'CDH8 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
CDH8 MUTATED 5 1 0 7
CDH8 WILD-TYPE 41 57 64 36

Figure S5235.  Get High-res Image Gene #2052: 'CDH8 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'CDH8 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 3e-04 (Fisher's exact test), Q value = 0.011

Table S21547.  Gene #2052: 'CDH8 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
CDH8 MUTATED 8 0 5
CDH8 WILD-TYPE 43 83 72

Figure S5236.  Get High-res Image Gene #2052: 'CDH8 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'CDH8 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0227 (Fisher's exact test), Q value = 0.15

Table S21548.  Gene #2052: 'CDH8 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
CDH8 MUTATED 24 9 6 1
CDH8 WILD-TYPE 154 174 95 19

Figure S5237.  Get High-res Image Gene #2052: 'CDH8 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'CDH8 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.933 (Fisher's exact test), Q value = 1

Table S21549.  Gene #2052: 'CDH8 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
CDH8 MUTATED 9 7 10
CDH8 WILD-TYPE 78 73 90
'CDH8 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.893 (Fisher's exact test), Q value = 1

Table S21550.  Gene #2052: 'CDH8 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
CDH8 MUTATED 6 14 12
CDH8 WILD-TYPE 83 146 126
'CDH8 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.831 (Fisher's exact test), Q value = 1

Table S21551.  Gene #2052: 'CDH8 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
CDH8 MUTATED 14 11 7
CDH8 WILD-TYPE 168 122 65
'CDH8 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.491 (Fisher's exact test), Q value = 0.82

Table S21552.  Gene #2052: 'CDH8 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
CDH8 MUTATED 7 9 10 12
CDH8 WILD-TYPE 105 87 82 174
'CDH8 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00095 (Fisher's exact test), Q value = 0.024

Table S21553.  Gene #2052: 'CDH8 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
CDH8 MUTATED 4 3 9 7 3 2 10
CDH8 WILD-TYPE 56 47 40 33 60 123 89

Figure S5238.  Get High-res Image Gene #2052: 'CDH8 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CDH8 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.568 (Fisher's exact test), Q value = 0.88

Table S21554.  Gene #2052: 'CDH8 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
CDH8 MUTATED 14 5 4 14
CDH8 WILD-TYPE 116 73 64 182
'CDH8 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.203 (Fisher's exact test), Q value = 0.51

Table S21555.  Gene #2052: 'CDH8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
CDH8 MUTATED 2 5 0 7 11 2 5 1 4
CDH8 WILD-TYPE 38 57 28 73 58 46 38 27 70
'CDH8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0773 (Fisher's exact test), Q value = 0.3

Table S21556.  Gene #2052: 'CDH8 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
CDH8 MUTATED 4 1 0 3
CDH8 WILD-TYPE 29 30 27 16
'CDH8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.625 (Fisher's exact test), Q value = 0.92

Table S21557.  Gene #2052: 'CDH8 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
CDH8 MUTATED 4 0 1 3
CDH8 WILD-TYPE 50 10 23 19
'ADAM17 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0387 (Fisher's exact test), Q value = 0.21

Table S21558.  Gene #2053: 'ADAM17 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ADAM17 MUTATED 4 0 1 3
ADAM17 WILD-TYPE 42 58 63 40

Figure S5239.  Get High-res Image Gene #2053: 'ADAM17 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'ADAM17 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.594 (Fisher's exact test), Q value = 0.9

Table S21559.  Gene #2053: 'ADAM17 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ADAM17 MUTATED 3 3 2
ADAM17 WILD-TYPE 48 80 75
'ADAM17 MUTATION STATUS' versus 'CN_CNMF'

P value = 8e-04 (Fisher's exact test), Q value = 0.021

Table S21560.  Gene #2053: 'ADAM17 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ADAM17 MUTATED 12 1 0 0
ADAM17 WILD-TYPE 166 182 101 20

Figure S5240.  Get High-res Image Gene #2053: 'ADAM17 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ADAM17 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.327 (Fisher's exact test), Q value = 0.66

Table S21561.  Gene #2053: 'ADAM17 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ADAM17 MUTATED 3 0 2
ADAM17 WILD-TYPE 84 80 98
'ADAM17 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.659 (Fisher's exact test), Q value = 0.95

Table S21562.  Gene #2053: 'ADAM17 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ADAM17 MUTATED 2 3 5
ADAM17 WILD-TYPE 87 157 133
'ADAM17 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.763 (Fisher's exact test), Q value = 1

Table S21563.  Gene #2053: 'ADAM17 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ADAM17 MUTATED 6 3 1
ADAM17 WILD-TYPE 176 130 71
'ADAM17 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.119 (Fisher's exact test), Q value = 0.38

Table S21564.  Gene #2053: 'ADAM17 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ADAM17 MUTATED 0 3 2 8
ADAM17 WILD-TYPE 112 93 90 178
'ADAM17 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.364 (Fisher's exact test), Q value = 0.69

Table S21565.  Gene #2053: 'ADAM17 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ADAM17 MUTATED 1 0 3 1 1 2 5
ADAM17 WILD-TYPE 59 50 46 39 62 123 94
'ADAM17 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.722 (Fisher's exact test), Q value = 0.99

Table S21566.  Gene #2053: 'ADAM17 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ADAM17 MUTATED 2 2 1 7
ADAM17 WILD-TYPE 128 76 67 189
'ADAM17 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.296 (Fisher's exact test), Q value = 0.63

Table S21567.  Gene #2053: 'ADAM17 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ADAM17 MUTATED 0 2 1 1 5 2 0 0 1
ADAM17 WILD-TYPE 40 60 27 79 64 46 43 28 73
'ADAM17 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0609 (Fisher's exact test), Q value = 0.27

Table S21568.  Gene #2053: 'ADAM17 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
ADAM17 MUTATED 0 0 1 2
ADAM17 WILD-TYPE 33 31 26 17
'ADAM17 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.446 (Fisher's exact test), Q value = 0.77

Table S21569.  Gene #2053: 'ADAM17 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
ADAM17 MUTATED 1 0 2 0
ADAM17 WILD-TYPE 53 10 22 22
'CHMP4B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0361 (Fisher's exact test), Q value = 0.2

Table S21570.  Gene #2054: 'CHMP4B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
CHMP4B MUTATED 2 0 0 1
CHMP4B WILD-TYPE 176 183 101 19

Figure S5241.  Get High-res Image Gene #2054: 'CHMP4B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'CHMP4B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.615 (Fisher's exact test), Q value = 0.91

Table S21571.  Gene #2054: 'CHMP4B MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
CHMP4B MUTATED 0 1 2
CHMP4B WILD-TYPE 89 159 136
'CHMP4B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.773 (Fisher's exact test), Q value = 1

Table S21572.  Gene #2054: 'CHMP4B MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
CHMP4B MUTATED 1 1 1
CHMP4B WILD-TYPE 181 132 71
'CHMP4B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.605 (Fisher's exact test), Q value = 0.91

Table S21573.  Gene #2054: 'CHMP4B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
CHMP4B MUTATED 0 1 1 1
CHMP4B WILD-TYPE 112 95 91 185
'CHMP4B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.313 (Fisher's exact test), Q value = 0.64

Table S21574.  Gene #2054: 'CHMP4B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
CHMP4B MUTATED 0 1 1 0 0 0 1
CHMP4B WILD-TYPE 60 49 48 40 63 125 98
'CHMP4B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S21575.  Gene #2054: 'CHMP4B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
CHMP4B MUTATED 1 0 0 2
CHMP4B WILD-TYPE 129 78 68 194
'CHMP4B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.67 (Fisher's exact test), Q value = 0.95

Table S21576.  Gene #2054: 'CHMP4B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
CHMP4B MUTATED 0 0 0 1 2 0 0 0 0
CHMP4B WILD-TYPE 40 62 28 79 67 48 43 28 74
'TMPRSS5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.106 (Fisher's exact test), Q value = 0.36

Table S21577.  Gene #2055: 'TMPRSS5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
TMPRSS5 MUTATED 6 1 0 0
TMPRSS5 WILD-TYPE 172 182 101 20
'TMPRSS5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.328 (Fisher's exact test), Q value = 0.66

Table S21578.  Gene #2055: 'TMPRSS5 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
TMPRSS5 MUTATED 3 0 2
TMPRSS5 WILD-TYPE 84 80 98
'TMPRSS5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.446 (Fisher's exact test), Q value = 0.77

Table S21579.  Gene #2055: 'TMPRSS5 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
TMPRSS5 MUTATED 2 1 3
TMPRSS5 WILD-TYPE 87 159 135
'TMPRSS5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.411 (Fisher's exact test), Q value = 0.74

Table S21580.  Gene #2055: 'TMPRSS5 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
TMPRSS5 MUTATED 3 1 2
TMPRSS5 WILD-TYPE 179 132 70
'TMPRSS5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.167 (Fisher's exact test), Q value = 0.46

Table S21581.  Gene #2055: 'TMPRSS5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
TMPRSS5 MUTATED 0 2 3 2
TMPRSS5 WILD-TYPE 112 94 89 184
'TMPRSS5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0184 (Fisher's exact test), Q value = 0.14

Table S21582.  Gene #2055: 'TMPRSS5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
TMPRSS5 MUTATED 0 3 2 0 0 0 2
TMPRSS5 WILD-TYPE 60 47 47 40 63 125 97

Figure S5242.  Get High-res Image Gene #2055: 'TMPRSS5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'TMPRSS5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.386 (Fisher's exact test), Q value = 0.71

Table S21583.  Gene #2055: 'TMPRSS5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
TMPRSS5 MUTATED 4 1 0 2
TMPRSS5 WILD-TYPE 126 77 68 194
'TMPRSS5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.09 (Fisher's exact test), Q value = 0.33

Table S21584.  Gene #2055: 'TMPRSS5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
TMPRSS5 MUTATED 2 2 0 0 3 0 0 0 0
TMPRSS5 WILD-TYPE 38 60 28 80 66 48 43 28 74
'TMPRSS5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.253 (Fisher's exact test), Q value = 0.58

Table S21585.  Gene #2055: 'TMPRSS5 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
TMPRSS5 MUTATED 2 0 0 1
TMPRSS5 WILD-TYPE 31 31 27 18
'TMPRSS5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S21586.  Gene #2055: 'TMPRSS5 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
TMPRSS5 MUTATED 2 0 1 0
TMPRSS5 WILD-TYPE 52 10 23 22
'TTR MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.233 (Fisher's exact test), Q value = 0.55

Table S21587.  Gene #2056: 'TTR MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
TTR MUTATED 2 1 0 0
TTR WILD-TYPE 44 57 64 43
'TTR MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.251 (Fisher's exact test), Q value = 0.58

Table S21588.  Gene #2056: 'TTR MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
TTR MUTATED 2 1 0
TTR WILD-TYPE 49 82 77
'TTR MUTATION STATUS' versus 'CN_CNMF'

P value = 0.342 (Fisher's exact test), Q value = 0.67

Table S21589.  Gene #2056: 'TTR MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
TTR MUTATED 3 0 1 0
TTR WILD-TYPE 175 183 100 20
'TTR MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.457 (Fisher's exact test), Q value = 0.78

Table S21590.  Gene #2056: 'TTR MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
TTR MUTATED 0 0 1 3
TTR WILD-TYPE 112 96 91 183
'TTR MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.907 (Fisher's exact test), Q value = 1

Table S21591.  Gene #2056: 'TTR MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
TTR MUTATED 0 0 0 0 1 1 2
TTR WILD-TYPE 60 50 49 40 62 124 97
'TTR MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.481 (Fisher's exact test), Q value = 0.81

Table S21592.  Gene #2056: 'TTR MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
TTR MUTATED 0 1 1 2
TTR WILD-TYPE 130 77 67 194
'TTR MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.804 (Fisher's exact test), Q value = 1

Table S21593.  Gene #2056: 'TTR MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
TTR MUTATED 0 1 0 0 2 0 0 0 1
TTR WILD-TYPE 40 61 28 80 67 48 43 28 73
'TBC1D25 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0108 (Fisher's exact test), Q value = 0.1

Table S21594.  Gene #2057: 'TBC1D25 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
TBC1D25 MUTATED 5 1 0 1
TBC1D25 WILD-TYPE 41 57 64 42

Figure S5243.  Get High-res Image Gene #2057: 'TBC1D25 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'TBC1D25 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00041 (Fisher's exact test), Q value = 0.013

Table S21595.  Gene #2057: 'TBC1D25 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
TBC1D25 MUTATED 6 0 1
TBC1D25 WILD-TYPE 45 83 76

Figure S5244.  Get High-res Image Gene #2057: 'TBC1D25 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'TBC1D25 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00577 (Fisher's exact test), Q value = 0.069

Table S21596.  Gene #2057: 'TBC1D25 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
TBC1D25 MUTATED 9 1 0 1
TBC1D25 WILD-TYPE 169 182 101 19

Figure S5245.  Get High-res Image Gene #2057: 'TBC1D25 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'TBC1D25 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.556 (Fisher's exact test), Q value = 0.87

Table S21597.  Gene #2057: 'TBC1D25 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
TBC1D25 MUTATED 2 0 2
TBC1D25 WILD-TYPE 85 80 98
'TBC1D25 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.166 (Fisher's exact test), Q value = 0.46

Table S21598.  Gene #2057: 'TBC1D25 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
TBC1D25 MUTATED 1 1 5
TBC1D25 WILD-TYPE 88 159 133
'TBC1D25 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0832 (Fisher's exact test), Q value = 0.31

Table S21599.  Gene #2057: 'TBC1D25 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
TBC1D25 MUTATED 5 0 2
TBC1D25 WILD-TYPE 177 133 70
'TBC1D25 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.429 (Fisher's exact test), Q value = 0.76

Table S21600.  Gene #2057: 'TBC1D25 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
TBC1D25 MUTATED 1 1 2 7
TBC1D25 WILD-TYPE 111 95 90 179
'TBC1D25 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0315 (Fisher's exact test), Q value = 0.18

Table S21601.  Gene #2057: 'TBC1D25 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
TBC1D25 MUTATED 1 0 3 0 0 1 6
TBC1D25 WILD-TYPE 59 50 46 40 63 124 93

Figure S5246.  Get High-res Image Gene #2057: 'TBC1D25 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'TBC1D25 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.474 (Fisher's exact test), Q value = 0.8

Table S21602.  Gene #2057: 'TBC1D25 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
TBC1D25 MUTATED 3 1 0 7
TBC1D25 WILD-TYPE 127 77 68 189
'TBC1D25 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.101 (Fisher's exact test), Q value = 0.35

Table S21603.  Gene #2057: 'TBC1D25 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
TBC1D25 MUTATED 1 2 0 0 5 1 1 1 0
TBC1D25 WILD-TYPE 39 60 28 80 64 47 42 27 74
'ZNF418 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00365 (Fisher's exact test), Q value = 0.055

Table S21604.  Gene #2058: 'ZNF418 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ZNF418 MUTATED 4 0 0 0
ZNF418 WILD-TYPE 42 58 64 43

Figure S5247.  Get High-res Image Gene #2058: 'ZNF418 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'ZNF418 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0604 (Fisher's exact test), Q value = 0.27

Table S21605.  Gene #2058: 'ZNF418 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ZNF418 MUTATED 3 1 0
ZNF418 WILD-TYPE 48 82 77
'ZNF418 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0228 (Fisher's exact test), Q value = 0.15

Table S21606.  Gene #2058: 'ZNF418 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ZNF418 MUTATED 11 2 1 0
ZNF418 WILD-TYPE 167 181 100 20

Figure S5248.  Get High-res Image Gene #2058: 'ZNF418 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ZNF418 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.254 (Fisher's exact test), Q value = 0.58

Table S21607.  Gene #2058: 'ZNF418 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ZNF418 MUTATED 3 1 6
ZNF418 WILD-TYPE 84 79 94
'ZNF418 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.542 (Fisher's exact test), Q value = 0.86

Table S21608.  Gene #2058: 'ZNF418 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ZNF418 MUTATED 1 6 4
ZNF418 WILD-TYPE 88 154 134
'ZNF418 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.147 (Fisher's exact test), Q value = 0.43

Table S21609.  Gene #2058: 'ZNF418 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ZNF418 MUTATED 3 7 1
ZNF418 WILD-TYPE 179 126 71
'ZNF418 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0438 (Fisher's exact test), Q value = 0.22

Table S21610.  Gene #2058: 'ZNF418 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ZNF418 MUTATED 1 7 1 5
ZNF418 WILD-TYPE 111 89 91 181

Figure S5249.  Get High-res Image Gene #2058: 'ZNF418 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'ZNF418 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.145 (Fisher's exact test), Q value = 0.42

Table S21611.  Gene #2058: 'ZNF418 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ZNF418 MUTATED 0 3 3 1 2 1 4
ZNF418 WILD-TYPE 60 47 46 39 61 124 95
'ZNF418 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.435 (Fisher's exact test), Q value = 0.76

Table S21612.  Gene #2058: 'ZNF418 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ZNF418 MUTATED 4 2 0 8
ZNF418 WILD-TYPE 126 76 68 188
'ZNF418 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.231 (Fisher's exact test), Q value = 0.55

Table S21613.  Gene #2058: 'ZNF418 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ZNF418 MUTATED 2 2 0 1 6 0 1 0 2
ZNF418 WILD-TYPE 38 60 28 79 63 48 42 28 72
'FOXA2 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S21614.  Gene #2059: 'FOXA2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
FOXA2 MUTATED 3 3 1 0
FOXA2 WILD-TYPE 175 180 100 20
'FOXA2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.193 (Fisher's exact test), Q value = 0.5

Table S21615.  Gene #2059: 'FOXA2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
FOXA2 MUTATED 0 3 3
FOXA2 WILD-TYPE 87 77 97
'FOXA2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.296 (Fisher's exact test), Q value = 0.63

Table S21616.  Gene #2059: 'FOXA2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
FOXA2 MUTATED 0 4 1
FOXA2 WILD-TYPE 89 156 137
'FOXA2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.596 (Fisher's exact test), Q value = 0.9

Table S21617.  Gene #2059: 'FOXA2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
FOXA2 MUTATED 2 3 0
FOXA2 WILD-TYPE 180 130 72
'FOXA2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.38 (Fisher's exact test), Q value = 0.71

Table S21618.  Gene #2059: 'FOXA2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
FOXA2 MUTATED 3 2 1 1
FOXA2 WILD-TYPE 109 94 91 185
'FOXA2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0745 (Fisher's exact test), Q value = 0.29

Table S21619.  Gene #2059: 'FOXA2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
FOXA2 MUTATED 2 2 2 0 0 1 0
FOXA2 WILD-TYPE 58 48 47 40 63 124 99
'FOXA2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.862 (Fisher's exact test), Q value = 1

Table S21620.  Gene #2059: 'FOXA2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
FOXA2 MUTATED 3 1 1 2
FOXA2 WILD-TYPE 127 77 67 194
'FOXA2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.474 (Fisher's exact test), Q value = 0.8

Table S21621.  Gene #2059: 'FOXA2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
FOXA2 MUTATED 0 1 1 0 2 2 0 0 1
FOXA2 WILD-TYPE 40 61 27 80 67 46 43 28 73
'GSTM4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0927 (Fisher's exact test), Q value = 0.33

Table S21622.  Gene #2060: 'GSTM4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
GSTM4 MUTATED 5 0 1 0
GSTM4 WILD-TYPE 173 183 100 20
'GSTM4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.204 (Fisher's exact test), Q value = 0.51

Table S21623.  Gene #2060: 'GSTM4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
GSTM4 MUTATED 3 0 1
GSTM4 WILD-TYPE 84 80 99
'GSTM4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.139 (Fisher's exact test), Q value = 0.42

Table S21624.  Gene #2060: 'GSTM4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
GSTM4 MUTATED 0 1 4
GSTM4 WILD-TYPE 89 159 134
'GSTM4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S21625.  Gene #2060: 'GSTM4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
GSTM4 MUTATED 2 2 1
GSTM4 WILD-TYPE 180 131 71
'GSTM4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.432 (Fisher's exact test), Q value = 0.76

Table S21626.  Gene #2060: 'GSTM4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
GSTM4 MUTATED 1 2 2 1
GSTM4 WILD-TYPE 111 94 90 185
'GSTM4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.01 (Fisher's exact test), Q value = 0.095

Table S21627.  Gene #2060: 'GSTM4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
GSTM4 MUTATED 0 3 2 0 0 0 1
GSTM4 WILD-TYPE 60 47 47 40 63 125 98

Figure S5250.  Get High-res Image Gene #2060: 'GSTM4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'GSTM4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S21628.  Gene #2060: 'GSTM4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
GSTM4 MUTATED 1 1 1 3
GSTM4 WILD-TYPE 129 77 67 193
'GSTM4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.479 (Fisher's exact test), Q value = 0.81

Table S21629.  Gene #2060: 'GSTM4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
GSTM4 MUTATED 0 1 0 0 2 0 2 0 1
GSTM4 WILD-TYPE 40 61 28 80 67 48 41 28 73
'GSTM4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.781 (Fisher's exact test), Q value = 1

Table S21630.  Gene #2060: 'GSTM4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
GSTM4 MUTATED 1 0 1 1
GSTM4 WILD-TYPE 32 31 26 18
'GSTM4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S21631.  Gene #2060: 'GSTM4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
GSTM4 MUTATED 2 0 1 0
GSTM4 WILD-TYPE 52 10 23 22
'PCDHGC4 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0121 (Fisher's exact test), Q value = 0.11

Table S21632.  Gene #2061: 'PCDHGC4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
PCDHGC4 MUTATED 5 1 0 3
PCDHGC4 WILD-TYPE 41 57 64 40

Figure S5251.  Get High-res Image Gene #2061: 'PCDHGC4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'PCDHGC4 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.017 (Fisher's exact test), Q value = 0.13

Table S21633.  Gene #2061: 'PCDHGC4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
PCDHGC4 MUTATED 6 2 1
PCDHGC4 WILD-TYPE 45 81 76

Figure S5252.  Get High-res Image Gene #2061: 'PCDHGC4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'PCDHGC4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00133 (Fisher's exact test), Q value = 0.03

Table S21634.  Gene #2061: 'PCDHGC4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
PCDHGC4 MUTATED 13 2 0 0
PCDHGC4 WILD-TYPE 165 181 101 20

Figure S5253.  Get High-res Image Gene #2061: 'PCDHGC4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'PCDHGC4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.891 (Fisher's exact test), Q value = 1

Table S21635.  Gene #2061: 'PCDHGC4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
PCDHGC4 MUTATED 3 2 2
PCDHGC4 WILD-TYPE 84 78 98
'PCDHGC4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.085 (Fisher's exact test), Q value = 0.32

Table S21636.  Gene #2061: 'PCDHGC4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
PCDHGC4 MUTATED 0 5 7
PCDHGC4 WILD-TYPE 89 155 131
'PCDHGC4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.925 (Fisher's exact test), Q value = 1

Table S21637.  Gene #2061: 'PCDHGC4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
PCDHGC4 MUTATED 5 5 2
PCDHGC4 WILD-TYPE 177 128 70
'PCDHGC4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.461 (Fisher's exact test), Q value = 0.79

Table S21638.  Gene #2061: 'PCDHGC4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
PCDHGC4 MUTATED 2 2 2 9
PCDHGC4 WILD-TYPE 110 94 90 177
'PCDHGC4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0201 (Fisher's exact test), Q value = 0.14

Table S21639.  Gene #2061: 'PCDHGC4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
PCDHGC4 MUTATED 2 0 4 0 0 2 7
PCDHGC4 WILD-TYPE 58 50 45 40 63 123 92

Figure S5254.  Get High-res Image Gene #2061: 'PCDHGC4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'PCDHGC4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.914 (Fisher's exact test), Q value = 1

Table S21640.  Gene #2061: 'PCDHGC4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
PCDHGC4 MUTATED 3 2 1 7
PCDHGC4 WILD-TYPE 127 76 67 189
'PCDHGC4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.516 (Fisher's exact test), Q value = 0.84

Table S21641.  Gene #2061: 'PCDHGC4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
PCDHGC4 MUTATED 0 2 0 2 5 0 1 1 2
PCDHGC4 WILD-TYPE 40 60 28 78 64 48 42 27 72
'PCDHGC4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00465 (Fisher's exact test), Q value = 0.062

Table S21642.  Gene #2061: 'PCDHGC4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
PCDHGC4 MUTATED 0 0 0 3
PCDHGC4 WILD-TYPE 33 31 27 16

Figure S5255.  Get High-res Image Gene #2061: 'PCDHGC4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'PCDHGC4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S21643.  Gene #2061: 'PCDHGC4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
PCDHGC4 MUTATED 2 0 1 0
PCDHGC4 WILD-TYPE 52 10 23 22
'KIAA1967 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.104 (Fisher's exact test), Q value = 0.36

Table S21644.  Gene #2062: 'KIAA1967 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
KIAA1967 MUTATED 3 1 0 2
KIAA1967 WILD-TYPE 43 57 64 41
'KIAA1967 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0721 (Fisher's exact test), Q value = 0.29

Table S21645.  Gene #2062: 'KIAA1967 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
KIAA1967 MUTATED 4 1 1
KIAA1967 WILD-TYPE 47 82 76
'KIAA1967 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0813 (Fisher's exact test), Q value = 0.31

Table S21646.  Gene #2062: 'KIAA1967 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
KIAA1967 MUTATED 9 2 1 0
KIAA1967 WILD-TYPE 169 181 100 20
'KIAA1967 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.681 (Fisher's exact test), Q value = 0.96

Table S21647.  Gene #2062: 'KIAA1967 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
KIAA1967 MUTATED 3 1 2
KIAA1967 WILD-TYPE 84 79 98
'KIAA1967 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S21648.  Gene #2062: 'KIAA1967 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
KIAA1967 MUTATED 2 5 4
KIAA1967 WILD-TYPE 87 155 134
'KIAA1967 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.194 (Fisher's exact test), Q value = 0.5

Table S21649.  Gene #2062: 'KIAA1967 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
KIAA1967 MUTATED 5 6 0
KIAA1967 WILD-TYPE 177 127 72
'KIAA1967 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.955 (Fisher's exact test), Q value = 1

Table S21650.  Gene #2062: 'KIAA1967 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
KIAA1967 MUTATED 2 3 2 5
KIAA1967 WILD-TYPE 110 93 90 181
'KIAA1967 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0884 (Fisher's exact test), Q value = 0.32

Table S21651.  Gene #2062: 'KIAA1967 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
KIAA1967 MUTATED 2 0 3 1 0 1 5
KIAA1967 WILD-TYPE 58 50 46 39 63 124 94
'KIAA1967 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.412 (Fisher's exact test), Q value = 0.74

Table S21652.  Gene #2062: 'KIAA1967 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
KIAA1967 MUTATED 2 2 0 7
KIAA1967 WILD-TYPE 128 76 68 189
'KIAA1967 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00658 (Fisher's exact test), Q value = 0.074

Table S21653.  Gene #2062: 'KIAA1967 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
KIAA1967 MUTATED 0 2 0 1 7 0 0 1 0
KIAA1967 WILD-TYPE 40 60 28 79 62 48 43 27 74

Figure S5256.  Get High-res Image Gene #2062: 'KIAA1967 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'KIAA1967 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.359 (Fisher's exact test), Q value = 0.69

Table S21654.  Gene #2062: 'KIAA1967 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
KIAA1967 MUTATED 1 1 0 2
KIAA1967 WILD-TYPE 32 30 27 17
'KIAA1967 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.671 (Fisher's exact test), Q value = 0.95

Table S21655.  Gene #2062: 'KIAA1967 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
KIAA1967 MUTATED 2 0 2 0
KIAA1967 WILD-TYPE 52 10 22 22
'CPB1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.615 (Fisher's exact test), Q value = 0.91

Table S21656.  Gene #2063: 'CPB1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
CPB1 MUTATED 2 2 1 0
CPB1 WILD-TYPE 44 56 63 43
'CPB1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S21657.  Gene #2063: 'CPB1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
CPB1 MUTATED 1 2 2
CPB1 WILD-TYPE 50 81 75
'CPB1 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S21658.  Gene #2063: 'CPB1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
CPB1 MUTATED 3 4 2 0
CPB1 WILD-TYPE 175 179 99 20
'CPB1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.466 (Fisher's exact test), Q value = 0.79

Table S21659.  Gene #2063: 'CPB1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
CPB1 MUTATED 0 2 2
CPB1 WILD-TYPE 87 78 98
'CPB1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.386 (Fisher's exact test), Q value = 0.71

Table S21660.  Gene #2063: 'CPB1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
CPB1 MUTATED 0 4 2
CPB1 WILD-TYPE 89 156 136
'CPB1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.859 (Fisher's exact test), Q value = 1

Table S21661.  Gene #2063: 'CPB1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
CPB1 MUTATED 2 3 1
CPB1 WILD-TYPE 180 130 71
'CPB1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.477 (Fisher's exact test), Q value = 0.81

Table S21662.  Gene #2063: 'CPB1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
CPB1 MUTATED 2 0 2 5
CPB1 WILD-TYPE 110 96 90 181
'CPB1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.976 (Fisher's exact test), Q value = 1

Table S21663.  Gene #2063: 'CPB1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
CPB1 MUTATED 0 1 1 1 1 3 2
CPB1 WILD-TYPE 60 49 48 39 62 122 97
'CPB1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.913 (Fisher's exact test), Q value = 1

Table S21664.  Gene #2063: 'CPB1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
CPB1 MUTATED 2 2 1 3
CPB1 WILD-TYPE 128 76 67 193
'CPB1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.709 (Fisher's exact test), Q value = 0.98

Table S21665.  Gene #2063: 'CPB1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
CPB1 MUTATED 0 2 1 0 1 1 1 0 2
CPB1 WILD-TYPE 40 60 27 80 68 47 42 28 72
'PTPN1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0223 (Fisher's exact test), Q value = 0.15

Table S21666.  Gene #2064: 'PTPN1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
PTPN1 MUTATED 2 0 0 3
PTPN1 WILD-TYPE 44 58 64 40

Figure S5257.  Get High-res Image Gene #2064: 'PTPN1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'PTPN1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.639 (Fisher's exact test), Q value = 0.93

Table S21667.  Gene #2064: 'PTPN1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
PTPN1 MUTATED 2 1 2
PTPN1 WILD-TYPE 49 82 75
'PTPN1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0118 (Fisher's exact test), Q value = 0.11

Table S21668.  Gene #2064: 'PTPN1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
PTPN1 MUTATED 9 1 0 0
PTPN1 WILD-TYPE 169 182 101 20

Figure S5258.  Get High-res Image Gene #2064: 'PTPN1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'PTPN1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.524 (Fisher's exact test), Q value = 0.85

Table S21669.  Gene #2064: 'PTPN1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
PTPN1 MUTATED 3 1 1
PTPN1 WILD-TYPE 84 79 99
'PTPN1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.909 (Fisher's exact test), Q value = 1

Table S21670.  Gene #2064: 'PTPN1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
PTPN1 MUTATED 2 3 4
PTPN1 WILD-TYPE 87 157 134
'PTPN1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S21671.  Gene #2064: 'PTPN1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
PTPN1 MUTATED 5 3 1
PTPN1 WILD-TYPE 177 130 71
'PTPN1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.557 (Fisher's exact test), Q value = 0.87

Table S21672.  Gene #2064: 'PTPN1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
PTPN1 MUTATED 1 1 3 5
PTPN1 WILD-TYPE 111 95 89 181
'PTPN1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.823 (Fisher's exact test), Q value = 1

Table S21673.  Gene #2064: 'PTPN1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
PTPN1 MUTATED 1 0 2 1 2 2 2
PTPN1 WILD-TYPE 59 50 47 39 61 123 97
'PTPN1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0606 (Fisher's exact test), Q value = 0.27

Table S21674.  Gene #2064: 'PTPN1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
PTPN1 MUTATED 1 4 0 2
PTPN1 WILD-TYPE 129 74 68 194
'PTPN1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.167 (Fisher's exact test), Q value = 0.46

Table S21675.  Gene #2064: 'PTPN1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
PTPN1 MUTATED 1 4 0 1 1 0 0 0 0
PTPN1 WILD-TYPE 39 58 28 79 68 48 43 28 74
'PTPN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.255 (Fisher's exact test), Q value = 0.58

Table S21676.  Gene #2064: 'PTPN1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
PTPN1 MUTATED 2 0 0 1
PTPN1 WILD-TYPE 31 31 27 18
'PTPN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.565 (Fisher's exact test), Q value = 0.87

Table S21677.  Gene #2064: 'PTPN1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
PTPN1 MUTATED 3 0 0 0
PTPN1 WILD-TYPE 51 10 24 22
'ZNF266 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.358 (Fisher's exact test), Q value = 0.69

Table S21678.  Gene #2065: 'ZNF266 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ZNF266 MUTATED 2 2 0 1
ZNF266 WILD-TYPE 44 56 64 42
'ZNF266 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.848 (Fisher's exact test), Q value = 1

Table S21679.  Gene #2065: 'ZNF266 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ZNF266 MUTATED 1 3 1
ZNF266 WILD-TYPE 50 80 76
'ZNF266 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.245 (Fisher's exact test), Q value = 0.57

Table S21680.  Gene #2065: 'ZNF266 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ZNF266 MUTATED 6 3 0 0
ZNF266 WILD-TYPE 172 180 101 20
'ZNF266 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S21681.  Gene #2065: 'ZNF266 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ZNF266 MUTATED 2 1 2
ZNF266 WILD-TYPE 85 79 98
'ZNF266 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.579 (Fisher's exact test), Q value = 0.88

Table S21682.  Gene #2065: 'ZNF266 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ZNF266 MUTATED 1 4 1
ZNF266 WILD-TYPE 88 156 137
'ZNF266 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0186 (Fisher's exact test), Q value = 0.14

Table S21683.  Gene #2065: 'ZNF266 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ZNF266 MUTATED 0 5 1
ZNF266 WILD-TYPE 182 128 71

Figure S5259.  Get High-res Image Gene #2065: 'ZNF266 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'ZNF266 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.755 (Fisher's exact test), Q value = 1

Table S21684.  Gene #2065: 'ZNF266 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ZNF266 MUTATED 1 2 1 5
ZNF266 WILD-TYPE 111 94 91 181
'ZNF266 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.983 (Fisher's exact test), Q value = 1

Table S21685.  Gene #2065: 'ZNF266 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ZNF266 MUTATED 1 1 1 0 1 2 3
ZNF266 WILD-TYPE 59 49 48 40 62 123 96
'ZNF266 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.113 (Fisher's exact test), Q value = 0.37

Table S21686.  Gene #2065: 'ZNF266 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ZNF266 MUTATED 0 1 1 7
ZNF266 WILD-TYPE 130 77 67 189
'ZNF266 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.397 (Fisher's exact test), Q value = 0.72

Table S21687.  Gene #2065: 'ZNF266 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ZNF266 MUTATED 0 1 0 1 4 0 0 0 3
ZNF266 WILD-TYPE 40 61 28 79 65 48 43 28 71
'BHLHE41 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.321 (Fisher's exact test), Q value = 0.65

Table S21688.  Gene #2066: 'BHLHE41 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
BHLHE41 MUTATED 2 1 1 1
BHLHE41 WILD-TYPE 176 182 100 19
'BHLHE41 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.69 (Fisher's exact test), Q value = 0.97

Table S21689.  Gene #2066: 'BHLHE41 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
BHLHE41 MUTATED 1 2 1
BHLHE41 WILD-TYPE 86 78 99
'BHLHE41 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.613 (Fisher's exact test), Q value = 0.91

Table S21690.  Gene #2066: 'BHLHE41 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
BHLHE41 MUTATED 0 1 2
BHLHE41 WILD-TYPE 89 159 136
'BHLHE41 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.424 (Fisher's exact test), Q value = 0.75

Table S21691.  Gene #2066: 'BHLHE41 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
BHLHE41 MUTATED 2 0 1
BHLHE41 WILD-TYPE 180 133 71
'BHLHE41 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.778 (Fisher's exact test), Q value = 1

Table S21692.  Gene #2066: 'BHLHE41 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
BHLHE41 MUTATED 2 1 1 1
BHLHE41 WILD-TYPE 110 95 91 185
'BHLHE41 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.155 (Fisher's exact test), Q value = 0.44

Table S21693.  Gene #2066: 'BHLHE41 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
BHLHE41 MUTATED 1 0 2 1 0 1 0
BHLHE41 WILD-TYPE 59 50 47 39 63 124 99
'BHLHE41 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.406 (Fisher's exact test), Q value = 0.73

Table S21694.  Gene #2066: 'BHLHE41 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
BHLHE41 MUTATED 3 1 0 1
BHLHE41 WILD-TYPE 127 77 68 195
'BHLHE41 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.432 (Fisher's exact test), Q value = 0.76

Table S21695.  Gene #2066: 'BHLHE41 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
BHLHE41 MUTATED 1 1 1 0 1 1 0 0 0
BHLHE41 WILD-TYPE 39 61 27 80 68 47 43 28 74
'ADAMTS16 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.144 (Fisher's exact test), Q value = 0.42

Table S21696.  Gene #2067: 'ADAMTS16 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ADAMTS16 MUTATED 3 1 2 5
ADAMTS16 WILD-TYPE 43 57 62 38
'ADAMTS16 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.355 (Fisher's exact test), Q value = 0.68

Table S21697.  Gene #2067: 'ADAMTS16 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ADAMTS16 MUTATED 4 5 2
ADAMTS16 WILD-TYPE 47 78 75
'ADAMTS16 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0309 (Fisher's exact test), Q value = 0.18

Table S21698.  Gene #2067: 'ADAMTS16 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ADAMTS16 MUTATED 18 5 7 1
ADAMTS16 WILD-TYPE 160 178 94 19

Figure S5260.  Get High-res Image Gene #2067: 'ADAMTS16 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ADAMTS16 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.795 (Fisher's exact test), Q value = 1

Table S21699.  Gene #2067: 'ADAMTS16 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ADAMTS16 MUTATED 6 8 9
ADAMTS16 WILD-TYPE 81 72 91
'ADAMTS16 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.414 (Fisher's exact test), Q value = 0.74

Table S21700.  Gene #2067: 'ADAMTS16 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ADAMTS16 MUTATED 5 9 13
ADAMTS16 WILD-TYPE 84 151 125
'ADAMTS16 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.314 (Fisher's exact test), Q value = 0.64

Table S21701.  Gene #2067: 'ADAMTS16 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ADAMTS16 MUTATED 15 10 2
ADAMTS16 WILD-TYPE 167 123 70
'ADAMTS16 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.605 (Fisher's exact test), Q value = 0.91

Table S21702.  Gene #2067: 'ADAMTS16 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ADAMTS16 MUTATED 7 9 7 10
ADAMTS16 WILD-TYPE 105 87 85 176
'ADAMTS16 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.425 (Fisher's exact test), Q value = 0.75

Table S21703.  Gene #2067: 'ADAMTS16 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ADAMTS16 MUTATED 4 3 7 2 4 5 8
ADAMTS16 WILD-TYPE 56 47 42 38 59 120 91
'ADAMTS16 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.116 (Fisher's exact test), Q value = 0.38

Table S21704.  Gene #2067: 'ADAMTS16 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ADAMTS16 MUTATED 14 2 3 12
ADAMTS16 WILD-TYPE 116 76 65 184
'ADAMTS16 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.334 (Fisher's exact test), Q value = 0.66

Table S21705.  Gene #2067: 'ADAMTS16 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ADAMTS16 MUTATED 4 4 2 5 7 0 3 0 6
ADAMTS16 WILD-TYPE 36 58 26 75 62 48 40 28 68
'ADAMTS16 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0186 (Fisher's exact test), Q value = 0.14

Table S21706.  Gene #2067: 'ADAMTS16 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
ADAMTS16 MUTATED 0 3 0 3
ADAMTS16 WILD-TYPE 33 28 27 16

Figure S5261.  Get High-res Image Gene #2067: 'ADAMTS16 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'ADAMTS16 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0643 (Fisher's exact test), Q value = 0.28

Table S21707.  Gene #2067: 'ADAMTS16 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
ADAMTS16 MUTATED 4 2 0 0
ADAMTS16 WILD-TYPE 50 8 24 22
'MCM9 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00158 (Fisher's exact test), Q value = 0.033

Table S21708.  Gene #2068: 'MCM9 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
MCM9 MUTATED 0 0 0 4
MCM9 WILD-TYPE 46 58 64 39

Figure S5262.  Get High-res Image Gene #2068: 'MCM9 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'MCM9 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.835 (Fisher's exact test), Q value = 1

Table S21709.  Gene #2068: 'MCM9 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
MCM9 MUTATED 1 1 2
MCM9 WILD-TYPE 50 82 75
'MCM9 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.256 (Fisher's exact test), Q value = 0.58

Table S21710.  Gene #2068: 'MCM9 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
MCM9 MUTATED 5 1 3 0
MCM9 WILD-TYPE 173 182 98 20
'MCM9 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.328 (Fisher's exact test), Q value = 0.66

Table S21711.  Gene #2068: 'MCM9 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
MCM9 MUTATED 3 0 2
MCM9 WILD-TYPE 84 80 98
'MCM9 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.767 (Fisher's exact test), Q value = 1

Table S21712.  Gene #2068: 'MCM9 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
MCM9 MUTATED 2 2 2
MCM9 WILD-TYPE 87 158 136
'MCM9 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.492 (Fisher's exact test), Q value = 0.82

Table S21713.  Gene #2068: 'MCM9 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
MCM9 MUTATED 2 2 2
MCM9 WILD-TYPE 180 131 70
'MCM9 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.733 (Fisher's exact test), Q value = 1

Table S21714.  Gene #2068: 'MCM9 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
MCM9 MUTATED 1 1 2 5
MCM9 WILD-TYPE 111 95 90 181
'MCM9 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.311 (Fisher's exact test), Q value = 0.64

Table S21715.  Gene #2068: 'MCM9 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
MCM9 MUTATED 0 2 0 1 1 1 4
MCM9 WILD-TYPE 60 48 49 39 62 124 95
'MCM9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.696 (Fisher's exact test), Q value = 0.97

Table S21716.  Gene #2068: 'MCM9 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
MCM9 MUTATED 2 2 0 5
MCM9 WILD-TYPE 128 76 68 191
'MCM9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.545 (Fisher's exact test), Q value = 0.86

Table S21717.  Gene #2068: 'MCM9 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
MCM9 MUTATED 1 2 2 1 1 0 0 0 2
MCM9 WILD-TYPE 39 60 26 79 68 48 43 28 72
'NSF MUTATION STATUS' versus 'CN_CNMF'

P value = 0.341 (Fisher's exact test), Q value = 0.67

Table S21718.  Gene #2069: 'NSF MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
NSF MUTATED 3 0 1 0
NSF WILD-TYPE 175 183 100 20
'NSF MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.295 (Fisher's exact test), Q value = 0.62

Table S21719.  Gene #2069: 'NSF MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
NSF MUTATED 2 1 0
NSF WILD-TYPE 85 79 100
'NSF MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S21720.  Gene #2069: 'NSF MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
NSF MUTATED 1 2 1
NSF WILD-TYPE 88 158 137
'NSF MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.251 (Fisher's exact test), Q value = 0.58

Table S21721.  Gene #2069: 'NSF MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
NSF MUTATED 1 1 2
NSF WILD-TYPE 181 132 70
'NSF MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.919 (Fisher's exact test), Q value = 1

Table S21722.  Gene #2069: 'NSF MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
NSF MUTATED 1 1 1 1
NSF WILD-TYPE 111 95 91 185
'NSF MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.142 (Fisher's exact test), Q value = 0.42

Table S21723.  Gene #2069: 'NSF MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
NSF MUTATED 0 0 2 0 1 0 1
NSF WILD-TYPE 60 50 47 40 62 125 98
'NSF MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.665 (Fisher's exact test), Q value = 0.95

Table S21724.  Gene #2069: 'NSF MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
NSF MUTATED 1 1 1 1
NSF WILD-TYPE 129 77 67 195
'NSF MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.422 (Fisher's exact test), Q value = 0.75

Table S21725.  Gene #2069: 'NSF MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
NSF MUTATED 0 2 0 0 1 0 1 0 0
NSF WILD-TYPE 40 60 28 80 68 48 42 28 74
'SAMD11 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.529 (Fisher's exact test), Q value = 0.85

Table S21726.  Gene #2070: 'SAMD11 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
SAMD11 MUTATED 4 1 1 0
SAMD11 WILD-TYPE 174 182 100 20
'SAMD11 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.833 (Fisher's exact test), Q value = 1

Table S21727.  Gene #2070: 'SAMD11 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
SAMD11 MUTATED 2 1 1
SAMD11 WILD-TYPE 85 79 99
'SAMD11 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S21728.  Gene #2070: 'SAMD11 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
SAMD11 MUTATED 1 2 2
SAMD11 WILD-TYPE 88 158 136
'SAMD11 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.271 (Fisher's exact test), Q value = 0.6

Table S21729.  Gene #2070: 'SAMD11 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
SAMD11 MUTATED 1 2 2
SAMD11 WILD-TYPE 181 131 70
'SAMD11 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.841 (Fisher's exact test), Q value = 1

Table S21730.  Gene #2070: 'SAMD11 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
SAMD11 MUTATED 1 1 2 2
SAMD11 WILD-TYPE 111 95 90 184
'SAMD11 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.107 (Fisher's exact test), Q value = 0.36

Table S21731.  Gene #2070: 'SAMD11 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
SAMD11 MUTATED 0 0 2 0 2 0 2
SAMD11 WILD-TYPE 60 50 47 40 61 125 97
'SAMD11 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.742 (Fisher's exact test), Q value = 1

Table S21732.  Gene #2070: 'SAMD11 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
SAMD11 MUTATED 3 1 0 2
SAMD11 WILD-TYPE 127 77 68 194
'SAMD11 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.5 (Fisher's exact test), Q value = 0.83

Table S21733.  Gene #2070: 'SAMD11 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
SAMD11 MUTATED 0 1 0 2 3 0 0 0 0
SAMD11 WILD-TYPE 40 61 28 78 66 48 43 28 74
'MMP19 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.113 (Fisher's exact test), Q value = 0.37

Table S21734.  Gene #2071: 'MMP19 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
MMP19 MUTATED 2 0 1 3
MMP19 WILD-TYPE 44 58 63 40
'MMP19 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0148 (Fisher's exact test), Q value = 0.12

Table S21735.  Gene #2071: 'MMP19 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
MMP19 MUTATED 4 0 2
MMP19 WILD-TYPE 47 83 75

Figure S5263.  Get High-res Image Gene #2071: 'MMP19 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'MMP19 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0687 (Fisher's exact test), Q value = 0.28

Table S21736.  Gene #2071: 'MMP19 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
MMP19 MUTATED 8 1 2 0
MMP19 WILD-TYPE 170 182 99 20
'MMP19 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.632 (Fisher's exact test), Q value = 0.93

Table S21737.  Gene #2071: 'MMP19 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
MMP19 MUTATED 1 1 3
MMP19 WILD-TYPE 86 79 97
'MMP19 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.66 (Fisher's exact test), Q value = 0.95

Table S21738.  Gene #2071: 'MMP19 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
MMP19 MUTATED 2 3 5
MMP19 WILD-TYPE 87 157 133
'MMP19 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.147 (Fisher's exact test), Q value = 0.43

Table S21739.  Gene #2071: 'MMP19 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
MMP19 MUTATED 4 6 0
MMP19 WILD-TYPE 178 127 72
'MMP19 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.747 (Fisher's exact test), Q value = 1

Table S21740.  Gene #2071: 'MMP19 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
MMP19 MUTATED 2 3 1 6
MMP19 WILD-TYPE 110 93 91 180
'MMP19 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.222 (Fisher's exact test), Q value = 0.54

Table S21741.  Gene #2071: 'MMP19 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
MMP19 MUTATED 1 2 2 1 0 1 5
MMP19 WILD-TYPE 59 48 47 39 63 124 94
'MMP19 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.129 (Fisher's exact test), Q value = 0.4

Table S21742.  Gene #2071: 'MMP19 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
MMP19 MUTATED 3 0 0 8
MMP19 WILD-TYPE 127 78 68 188
'MMP19 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0243 (Fisher's exact test), Q value = 0.16

Table S21743.  Gene #2071: 'MMP19 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
MMP19 MUTATED 0 0 1 0 6 1 1 1 1
MMP19 WILD-TYPE 40 62 27 80 63 47 42 27 73

Figure S5264.  Get High-res Image Gene #2071: 'MMP19 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'MMP19 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.136 (Fisher's exact test), Q value = 0.41

Table S21744.  Gene #2071: 'MMP19 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
MMP19 MUTATED 1 0 0 2
MMP19 WILD-TYPE 32 31 27 17
'MMP19 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.694 (Fisher's exact test), Q value = 0.97

Table S21745.  Gene #2071: 'MMP19 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
MMP19 MUTATED 1 0 1 1
MMP19 WILD-TYPE 53 10 23 21
'ATG10 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.043 (Fisher's exact test), Q value = 0.22

Table S21746.  Gene #2072: 'ATG10 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ATG10 MUTATED 5 0 0 0
ATG10 WILD-TYPE 173 183 101 20

Figure S5265.  Get High-res Image Gene #2072: 'ATG10 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ATG10 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.514 (Fisher's exact test), Q value = 0.83

Table S21747.  Gene #2072: 'ATG10 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ATG10 MUTATED 2 0 1
ATG10 WILD-TYPE 85 80 99
'ATG10 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.374 (Fisher's exact test), Q value = 0.7

Table S21748.  Gene #2072: 'ATG10 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ATG10 MUTATED 0 2 3
ATG10 WILD-TYPE 89 158 135
'ATG10 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.504 (Fisher's exact test), Q value = 0.83

Table S21749.  Gene #2072: 'ATG10 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ATG10 MUTATED 4 1 0
ATG10 WILD-TYPE 178 132 72
'ATG10 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.459 (Fisher's exact test), Q value = 0.79

Table S21750.  Gene #2072: 'ATG10 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ATG10 MUTATED 0 1 2 2
ATG10 WILD-TYPE 112 95 90 184
'ATG10 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0207 (Fisher's exact test), Q value = 0.15

Table S21751.  Gene #2072: 'ATG10 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ATG10 MUTATED 0 0 3 0 0 0 2
ATG10 WILD-TYPE 60 50 46 40 63 125 97

Figure S5266.  Get High-res Image Gene #2072: 'ATG10 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ATG10 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.585 (Fisher's exact test), Q value = 0.89

Table S21752.  Gene #2072: 'ATG10 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ATG10 MUTATED 1 0 0 4
ATG10 WILD-TYPE 129 78 68 192
'ATG10 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.199 (Fisher's exact test), Q value = 0.5

Table S21753.  Gene #2072: 'ATG10 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ATG10 MUTATED 0 2 1 0 2 0 0 0 0
ATG10 WILD-TYPE 40 60 27 80 67 48 43 28 74
'TMSB15B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0601 (Fisher's exact test), Q value = 0.27

Table S21754.  Gene #2073: 'TMSB15B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
TMSB15B MUTATED 1 0 3 0
TMSB15B WILD-TYPE 177 183 98 20
'TMSB15B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S21755.  Gene #2073: 'TMSB15B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
TMSB15B MUTATED 1 1 2
TMSB15B WILD-TYPE 86 79 98
'TMSB15B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.333 (Fisher's exact test), Q value = 0.66

Table S21756.  Gene #2073: 'TMSB15B MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
TMSB15B MUTATED 1 0 2
TMSB15B WILD-TYPE 88 160 136
'TMSB15B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.297 (Fisher's exact test), Q value = 0.63

Table S21757.  Gene #2073: 'TMSB15B MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
TMSB15B MUTATED 3 0 0
TMSB15B WILD-TYPE 179 133 72
'TMSB15B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.205 (Fisher's exact test), Q value = 0.51

Table S21758.  Gene #2073: 'TMSB15B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
TMSB15B MUTATED 2 1 1 0
TMSB15B WILD-TYPE 110 95 91 186
'TMSB15B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.151 (Fisher's exact test), Q value = 0.44

Table S21759.  Gene #2073: 'TMSB15B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
TMSB15B MUTATED 1 0 1 1 1 0 0
TMSB15B WILD-TYPE 59 50 48 39 62 125 99
'TMSB15B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.186 (Fisher's exact test), Q value = 0.49

Table S21760.  Gene #2073: 'TMSB15B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
TMSB15B MUTATED 2 1 1 0
TMSB15B WILD-TYPE 128 77 67 196
'TMSB15B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.915 (Fisher's exact test), Q value = 1

Table S21761.  Gene #2073: 'TMSB15B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
TMSB15B MUTATED 0 1 0 1 1 0 1 0 0
TMSB15B WILD-TYPE 40 61 28 79 68 48 42 28 74
'TMSB15B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S21762.  Gene #2073: 'TMSB15B MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
TMSB15B MUTATED 1 1 1 0
TMSB15B WILD-TYPE 32 30 26 19
'TMSB15B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.312 (Fisher's exact test), Q value = 0.64

Table S21763.  Gene #2073: 'TMSB15B MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
TMSB15B MUTATED 1 1 1 0
TMSB15B WILD-TYPE 53 9 23 22
'GIMAP8 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00176 (Fisher's exact test), Q value = 0.035

Table S21764.  Gene #2074: 'GIMAP8 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
GIMAP8 MUTATED 5 0 0 2
GIMAP8 WILD-TYPE 41 58 64 41

Figure S5267.  Get High-res Image Gene #2074: 'GIMAP8 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'GIMAP8 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0152 (Fisher's exact test), Q value = 0.12

Table S21765.  Gene #2074: 'GIMAP8 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
GIMAP8 MUTATED 5 1 1
GIMAP8 WILD-TYPE 46 82 76

Figure S5268.  Get High-res Image Gene #2074: 'GIMAP8 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'GIMAP8 MUTATION STATUS' versus 'CN_CNMF'

P value = 9e-05 (Fisher's exact test), Q value = 0.0048

Table S21766.  Gene #2074: 'GIMAP8 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
GIMAP8 MUTATED 18 2 1 0
GIMAP8 WILD-TYPE 160 181 100 20

Figure S5269.  Get High-res Image Gene #2074: 'GIMAP8 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'GIMAP8 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0104 (Fisher's exact test), Q value = 0.097

Table S21767.  Gene #2074: 'GIMAP8 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
GIMAP8 MUTATED 4 0 9
GIMAP8 WILD-TYPE 83 80 91

Figure S5270.  Get High-res Image Gene #2074: 'GIMAP8 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'GIMAP8 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0112 (Fisher's exact test), Q value = 0.1

Table S21768.  Gene #2074: 'GIMAP8 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
GIMAP8 MUTATED 0 7 11
GIMAP8 WILD-TYPE 89 153 127

Figure S5271.  Get High-res Image Gene #2074: 'GIMAP8 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'GIMAP8 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.252 (Fisher's exact test), Q value = 0.58

Table S21769.  Gene #2074: 'GIMAP8 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
GIMAP8 MUTATED 8 9 1
GIMAP8 WILD-TYPE 174 124 71
'GIMAP8 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.753 (Fisher's exact test), Q value = 1

Table S21770.  Gene #2074: 'GIMAP8 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
GIMAP8 MUTATED 3 5 5 8
GIMAP8 WILD-TYPE 109 91 87 178
'GIMAP8 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0297 (Fisher's exact test), Q value = 0.18

Table S21771.  Gene #2074: 'GIMAP8 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
GIMAP8 MUTATED 3 5 4 0 2 1 6
GIMAP8 WILD-TYPE 57 45 45 40 61 124 93

Figure S5272.  Get High-res Image Gene #2074: 'GIMAP8 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'GIMAP8 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.888 (Fisher's exact test), Q value = 1

Table S21772.  Gene #2074: 'GIMAP8 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
GIMAP8 MUTATED 6 2 2 9
GIMAP8 WILD-TYPE 124 76 66 187
'GIMAP8 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.673 (Fisher's exact test), Q value = 0.95

Table S21773.  Gene #2074: 'GIMAP8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
GIMAP8 MUTATED 1 4 0 4 5 1 2 1 1
GIMAP8 WILD-TYPE 39 58 28 76 64 47 41 27 73
'GIMAP8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.182 (Fisher's exact test), Q value = 0.48

Table S21774.  Gene #2074: 'GIMAP8 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
GIMAP8 MUTATED 1 0 3 1
GIMAP8 WILD-TYPE 32 31 24 18
'GIMAP8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.349 (Fisher's exact test), Q value = 0.68

Table S21775.  Gene #2074: 'GIMAP8 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
GIMAP8 MUTATED 1 0 2 2
GIMAP8 WILD-TYPE 53 10 22 20
'TNXB MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.125 (Fisher's exact test), Q value = 0.39

Table S21776.  Gene #2075: 'TNXB MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
TNXB MUTATED 4 3 1 5
TNXB WILD-TYPE 42 55 63 38
'TNXB MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.767 (Fisher's exact test), Q value = 1

Table S21777.  Gene #2075: 'TNXB MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
TNXB MUTATED 4 4 5
TNXB WILD-TYPE 47 79 72
'TNXB MUTATION STATUS' versus 'CN_CNMF'

P value = 6e-05 (Fisher's exact test), Q value = 0.0037

Table S21778.  Gene #2075: 'TNXB MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
TNXB MUTATED 30 7 5 1
TNXB WILD-TYPE 148 176 96 19

Figure S5273.  Get High-res Image Gene #2075: 'TNXB MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'TNXB MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.586 (Fisher's exact test), Q value = 0.89

Table S21779.  Gene #2075: 'TNXB MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
TNXB MUTATED 10 7 14
TNXB WILD-TYPE 77 73 86
'TNXB MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0774 (Fisher's exact test), Q value = 0.3

Table S21780.  Gene #2075: 'TNXB MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
TNXB MUTATED 7 9 18
TNXB WILD-TYPE 82 151 120
'TNXB MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.354 (Fisher's exact test), Q value = 0.68

Table S21781.  Gene #2075: 'TNXB MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
TNXB MUTATED 20 10 4
TNXB WILD-TYPE 162 123 68
'TNXB MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.114 (Fisher's exact test), Q value = 0.37

Table S21782.  Gene #2075: 'TNXB MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
TNXB MUTATED 7 13 11 12
TNXB WILD-TYPE 105 83 81 174
'TNXB MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00034 (Fisher's exact test), Q value = 0.012

Table S21783.  Gene #2075: 'TNXB MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
TNXB MUTATED 6 6 14 1 4 5 7
TNXB WILD-TYPE 54 44 35 39 59 120 92

Figure S5274.  Get High-res Image Gene #2075: 'TNXB MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'TNXB MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0125 (Fisher's exact test), Q value = 0.11

Table S21784.  Gene #2075: 'TNXB MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
TNXB MUTATED 19 7 1 15
TNXB WILD-TYPE 111 71 67 181

Figure S5275.  Get High-res Image Gene #2075: 'TNXB MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'TNXB MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0397 (Fisher's exact test), Q value = 0.21

Table S21785.  Gene #2075: 'TNXB MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
TNXB MUTATED 4 8 5 5 11 3 1 3 2
TNXB WILD-TYPE 36 54 23 75 58 45 42 25 72

Figure S5276.  Get High-res Image Gene #2075: 'TNXB MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'TNXB MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0733 (Fisher's exact test), Q value = 0.29

Table S21786.  Gene #2075: 'TNXB MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
TNXB MUTATED 3 2 0 4
TNXB WILD-TYPE 30 29 27 15
'TNXB MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.835 (Fisher's exact test), Q value = 1

Table S21787.  Gene #2075: 'TNXB MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
TNXB MUTATED 6 0 2 1
TNXB WILD-TYPE 48 10 22 21
'FBXL19 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.549 (Fisher's exact test), Q value = 0.87

Table S21788.  Gene #2076: 'FBXL19 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
FBXL19 MUTATED 4 3 0 0
FBXL19 WILD-TYPE 174 180 101 20
'FBXL19 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S21789.  Gene #2076: 'FBXL19 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
FBXL19 MUTATED 2 2 2
FBXL19 WILD-TYPE 85 78 98
'FBXL19 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0947 (Fisher's exact test), Q value = 0.34

Table S21790.  Gene #2076: 'FBXL19 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
FBXL19 MUTATED 1 5 0
FBXL19 WILD-TYPE 88 155 138
'FBXL19 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.861 (Fisher's exact test), Q value = 1

Table S21791.  Gene #2076: 'FBXL19 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
FBXL19 MUTATED 2 3 1
FBXL19 WILD-TYPE 180 130 71
'FBXL19 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.301 (Fisher's exact test), Q value = 0.63

Table S21792.  Gene #2076: 'FBXL19 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
FBXL19 MUTATED 2 3 1 1
FBXL19 WILD-TYPE 110 93 91 185
'FBXL19 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.304 (Fisher's exact test), Q value = 0.63

Table S21793.  Gene #2076: 'FBXL19 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
FBXL19 MUTATED 1 2 1 0 1 0 2
FBXL19 WILD-TYPE 59 48 48 40 62 125 97
'FBXL19 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.384 (Fisher's exact test), Q value = 0.71

Table S21794.  Gene #2076: 'FBXL19 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
FBXL19 MUTATED 4 1 0 2
FBXL19 WILD-TYPE 126 77 68 194
'FBXL19 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0655 (Fisher's exact test), Q value = 0.28

Table S21795.  Gene #2076: 'FBXL19 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
FBXL19 MUTATED 1 1 2 0 2 0 0 1 0
FBXL19 WILD-TYPE 39 61 26 80 67 48 43 27 74
'ANKRD6 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.102 (Fisher's exact test), Q value = 0.35

Table S21796.  Gene #2077: 'ANKRD6 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ANKRD6 MUTATED 3 0 2 0
ANKRD6 WILD-TYPE 43 58 62 43
'ANKRD6 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.738 (Fisher's exact test), Q value = 1

Table S21797.  Gene #2077: 'ANKRD6 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ANKRD6 MUTATED 2 2 1
ANKRD6 WILD-TYPE 49 81 76
'ANKRD6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0265 (Fisher's exact test), Q value = 0.16

Table S21798.  Gene #2077: 'ANKRD6 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ANKRD6 MUTATED 10 3 0 0
ANKRD6 WILD-TYPE 168 180 101 20

Figure S5277.  Get High-res Image Gene #2077: 'ANKRD6 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ANKRD6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.143 (Fisher's exact test), Q value = 0.42

Table S21799.  Gene #2077: 'ANKRD6 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ANKRD6 MUTATED 4 0 4
ANKRD6 WILD-TYPE 83 80 96
'ANKRD6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.697 (Fisher's exact test), Q value = 0.97

Table S21800.  Gene #2077: 'ANKRD6 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ANKRD6 MUTATED 1 5 3
ANKRD6 WILD-TYPE 88 155 135
'ANKRD6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.142 (Fisher's exact test), Q value = 0.42

Table S21801.  Gene #2077: 'ANKRD6 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ANKRD6 MUTATED 3 2 4
ANKRD6 WILD-TYPE 179 131 68
'ANKRD6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0838 (Fisher's exact test), Q value = 0.31

Table S21802.  Gene #2077: 'ANKRD6 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ANKRD6 MUTATED 0 5 2 6
ANKRD6 WILD-TYPE 112 91 90 180
'ANKRD6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0319 (Fisher's exact test), Q value = 0.18

Table S21803.  Gene #2077: 'ANKRD6 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ANKRD6 MUTATED 0 2 5 0 0 3 3
ANKRD6 WILD-TYPE 60 48 44 40 63 122 96

Figure S5278.  Get High-res Image Gene #2077: 'ANKRD6 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ANKRD6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.747 (Fisher's exact test), Q value = 1

Table S21804.  Gene #2077: 'ANKRD6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ANKRD6 MUTATED 5 1 2 5
ANKRD6 WILD-TYPE 125 77 66 191
'ANKRD6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.814 (Fisher's exact test), Q value = 1

Table S21805.  Gene #2077: 'ANKRD6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ANKRD6 MUTATED 0 2 1 1 4 1 1 1 2
ANKRD6 WILD-TYPE 40 60 27 79 65 47 42 27 72
'WDR17 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0922 (Fisher's exact test), Q value = 0.33

Table S21806.  Gene #2078: 'WDR17 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
WDR17 MUTATED 4 1 1 4
WDR17 WILD-TYPE 42 57 63 39
'WDR17 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.232 (Fisher's exact test), Q value = 0.55

Table S21807.  Gene #2078: 'WDR17 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
WDR17 MUTATED 5 3 2
WDR17 WILD-TYPE 46 80 75
'WDR17 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00134 (Fisher's exact test), Q value = 0.03

Table S21808.  Gene #2078: 'WDR17 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
WDR17 MUTATED 19 3 4 0
WDR17 WILD-TYPE 159 180 97 20

Figure S5279.  Get High-res Image Gene #2078: 'WDR17 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'WDR17 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.248 (Fisher's exact test), Q value = 0.57

Table S21809.  Gene #2078: 'WDR17 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
WDR17 MUTATED 8 3 4
WDR17 WILD-TYPE 79 77 96
'WDR17 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.122 (Fisher's exact test), Q value = 0.39

Table S21810.  Gene #2078: 'WDR17 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
WDR17 MUTATED 1 11 8
WDR17 WILD-TYPE 88 149 130
'WDR17 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.174 (Fisher's exact test), Q value = 0.47

Table S21811.  Gene #2078: 'WDR17 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
WDR17 MUTATED 9 10 1
WDR17 WILD-TYPE 173 123 71
'WDR17 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.175 (Fisher's exact test), Q value = 0.47

Table S21812.  Gene #2078: 'WDR17 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
WDR17 MUTATED 2 8 5 11
WDR17 WILD-TYPE 110 88 87 175
'WDR17 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.225 (Fisher's exact test), Q value = 0.54

Table S21813.  Gene #2078: 'WDR17 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
WDR17 MUTATED 3 4 3 2 3 2 9
WDR17 WILD-TYPE 57 46 46 38 60 123 90
'WDR17 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.317 (Fisher's exact test), Q value = 0.65

Table S21814.  Gene #2078: 'WDR17 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
WDR17 MUTATED 4 6 2 13
WDR17 WILD-TYPE 126 72 66 183
'WDR17 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.216 (Fisher's exact test), Q value = 0.53

Table S21815.  Gene #2078: 'WDR17 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
WDR17 MUTATED 3 4 3 2 6 0 3 0 4
WDR17 WILD-TYPE 37 58 25 78 63 48 40 28 70
'MRPL47 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.017 (Fisher's exact test), Q value = 0.13

Table S21816.  Gene #2079: 'MRPL47 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
MRPL47 MUTATED 1 0 0 3
MRPL47 WILD-TYPE 45 58 64 40

Figure S5280.  Get High-res Image Gene #2079: 'MRPL47 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'MRPL47 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.556 (Fisher's exact test), Q value = 0.87

Table S21817.  Gene #2079: 'MRPL47 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
MRPL47 MUTATED 2 1 1
MRPL47 WILD-TYPE 49 82 76
'MRPL47 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00259 (Fisher's exact test), Q value = 0.044

Table S21818.  Gene #2079: 'MRPL47 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
MRPL47 MUTATED 4 0 0 2
MRPL47 WILD-TYPE 174 183 101 18

Figure S5281.  Get High-res Image Gene #2079: 'MRPL47 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'MRPL47 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S21819.  Gene #2079: 'MRPL47 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
MRPL47 MUTATED 1 1 1
MRPL47 WILD-TYPE 86 79 99
'MRPL47 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.848 (Fisher's exact test), Q value = 1

Table S21820.  Gene #2079: 'MRPL47 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
MRPL47 MUTATED 1 3 1
MRPL47 WILD-TYPE 88 157 137
'MRPL47 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S21821.  Gene #2079: 'MRPL47 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
MRPL47 MUTATED 2 2 1
MRPL47 WILD-TYPE 180 131 71
'MRPL47 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.669 (Fisher's exact test), Q value = 0.95

Table S21822.  Gene #2079: 'MRPL47 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
MRPL47 MUTATED 1 0 1 4
MRPL47 WILD-TYPE 111 96 91 182
'MRPL47 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.142 (Fisher's exact test), Q value = 0.42

Table S21823.  Gene #2079: 'MRPL47 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
MRPL47 MUTATED 2 0 1 0 0 0 3
MRPL47 WILD-TYPE 58 50 48 40 63 125 96
'MRPL47 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.686 (Fisher's exact test), Q value = 0.96

Table S21824.  Gene #2079: 'MRPL47 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
MRPL47 MUTATED 2 0 0 3
MRPL47 WILD-TYPE 128 78 68 193
'MRPL47 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.573 (Fisher's exact test), Q value = 0.88

Table S21825.  Gene #2079: 'MRPL47 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
MRPL47 MUTATED 1 0 1 1 1 1 0 0 0
MRPL47 WILD-TYPE 39 62 27 79 68 47 43 28 74
'TRPV2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00702 (Fisher's exact test), Q value = 0.077

Table S21826.  Gene #2080: 'TRPV2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
TRPV2 MUTATED 4 0 0 2
TRPV2 WILD-TYPE 42 58 64 41

Figure S5282.  Get High-res Image Gene #2080: 'TRPV2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'TRPV2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0017 (Fisher's exact test), Q value = 0.034

Table S21827.  Gene #2080: 'TRPV2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
TRPV2 MUTATED 5 0 1
TRPV2 WILD-TYPE 46 83 76

Figure S5283.  Get High-res Image Gene #2080: 'TRPV2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'TRPV2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00017 (Fisher's exact test), Q value = 0.0075

Table S21828.  Gene #2080: 'TRPV2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
TRPV2 MUTATED 12 0 0 0
TRPV2 WILD-TYPE 166 183 101 20

Figure S5284.  Get High-res Image Gene #2080: 'TRPV2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'TRPV2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.252 (Fisher's exact test), Q value = 0.58

Table S21829.  Gene #2080: 'TRPV2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
TRPV2 MUTATED 2 0 4
TRPV2 WILD-TYPE 85 80 96
'TRPV2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0753 (Fisher's exact test), Q value = 0.29

Table S21830.  Gene #2080: 'TRPV2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
TRPV2 MUTATED 0 4 7
TRPV2 WILD-TYPE 89 156 131
'TRPV2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.85 (Fisher's exact test), Q value = 1

Table S21831.  Gene #2080: 'TRPV2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
TRPV2 MUTATED 6 4 1
TRPV2 WILD-TYPE 176 129 71
'TRPV2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.14 (Fisher's exact test), Q value = 0.42

Table S21832.  Gene #2080: 'TRPV2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
TRPV2 MUTATED 0 3 4 5
TRPV2 WILD-TYPE 112 93 88 181
'TRPV2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00208 (Fisher's exact test), Q value = 0.038

Table S21833.  Gene #2080: 'TRPV2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
TRPV2 MUTATED 1 1 5 0 0 0 5
TRPV2 WILD-TYPE 59 49 44 40 63 125 94

Figure S5285.  Get High-res Image Gene #2080: 'TRPV2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'TRPV2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.44 (Fisher's exact test), Q value = 0.77

Table S21834.  Gene #2080: 'TRPV2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
TRPV2 MUTATED 4 1 0 7
TRPV2 WILD-TYPE 126 77 68 189
'TRPV2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0215 (Fisher's exact test), Q value = 0.15

Table S21835.  Gene #2080: 'TRPV2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
TRPV2 MUTATED 0 2 0 1 6 0 1 2 0
TRPV2 WILD-TYPE 40 60 28 79 63 48 42 26 74

Figure S5286.  Get High-res Image Gene #2080: 'TRPV2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'TRPV2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00471 (Fisher's exact test), Q value = 0.062

Table S21836.  Gene #2080: 'TRPV2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
TRPV2 MUTATED 0 0 0 3
TRPV2 WILD-TYPE 33 31 27 16

Figure S5287.  Get High-res Image Gene #2080: 'TRPV2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'TRPV2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S21837.  Gene #2080: 'TRPV2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
TRPV2 MUTATED 2 0 1 0
TRPV2 WILD-TYPE 52 10 23 22
'RAG1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.151 (Fisher's exact test), Q value = 0.44

Table S21838.  Gene #2081: 'RAG1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
RAG1 MUTATED 3 1 1 4
RAG1 WILD-TYPE 43 57 63 39
'RAG1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.517 (Fisher's exact test), Q value = 0.84

Table S21839.  Gene #2081: 'RAG1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
RAG1 MUTATED 3 2 4
RAG1 WILD-TYPE 48 81 73
'RAG1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00026 (Fisher's exact test), Q value = 0.0099

Table S21840.  Gene #2081: 'RAG1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
RAG1 MUTATED 15 2 0 0
RAG1 WILD-TYPE 163 181 101 20

Figure S5288.  Get High-res Image Gene #2081: 'RAG1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'RAG1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.495 (Fisher's exact test), Q value = 0.82

Table S21841.  Gene #2081: 'RAG1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
RAG1 MUTATED 4 1 3
RAG1 WILD-TYPE 83 79 97
'RAG1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.14 (Fisher's exact test), Q value = 0.42

Table S21842.  Gene #2081: 'RAG1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
RAG1 MUTATED 0 6 6
RAG1 WILD-TYPE 89 154 132
'RAG1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.54 (Fisher's exact test), Q value = 0.86

Table S21843.  Gene #2081: 'RAG1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
RAG1 MUTATED 5 6 1
RAG1 WILD-TYPE 177 127 71
'RAG1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.237 (Fisher's exact test), Q value = 0.56

Table S21844.  Gene #2081: 'RAG1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
RAG1 MUTATED 1 3 3 10
RAG1 WILD-TYPE 111 93 89 176
'RAG1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0397 (Fisher's exact test), Q value = 0.21

Table S21845.  Gene #2081: 'RAG1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
RAG1 MUTATED 3 1 4 0 0 2 7
RAG1 WILD-TYPE 57 49 45 40 63 123 92

Figure S5289.  Get High-res Image Gene #2081: 'RAG1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'RAG1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.163 (Fisher's exact test), Q value = 0.46

Table S21846.  Gene #2081: 'RAG1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
RAG1 MUTATED 5 1 0 10
RAG1 WILD-TYPE 125 77 68 186
'RAG1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.467 (Fisher's exact test), Q value = 0.79

Table S21847.  Gene #2081: 'RAG1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
RAG1 MUTATED 0 2 2 2 5 2 0 1 2
RAG1 WILD-TYPE 40 60 26 78 64 46 43 27 72
'RAG1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.137 (Fisher's exact test), Q value = 0.41

Table S21848.  Gene #2081: 'RAG1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
RAG1 MUTATED 1 0 0 2
RAG1 WILD-TYPE 32 31 27 17
'RAG1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S21849.  Gene #2081: 'RAG1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
RAG1 MUTATED 2 0 1 0
RAG1 WILD-TYPE 52 10 23 22
'IL8 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0532 (Fisher's exact test), Q value = 0.25

Table S21850.  Gene #2082: 'IL8 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
IL8 MUTATED 4 0 1 1
IL8 WILD-TYPE 174 183 100 19
'IL8 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S21851.  Gene #2082: 'IL8 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
IL8 MUTATED 2 1 2
IL8 WILD-TYPE 85 79 98
'IL8 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.508 (Fisher's exact test), Q value = 0.83

Table S21852.  Gene #2082: 'IL8 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
IL8 MUTATED 0 3 3
IL8 WILD-TYPE 89 157 135
'IL8 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.666 (Fisher's exact test), Q value = 0.95

Table S21853.  Gene #2082: 'IL8 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
IL8 MUTATED 4 2 0
IL8 WILD-TYPE 178 131 72
'IL8 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00199 (Fisher's exact test), Q value = 0.037

Table S21854.  Gene #2082: 'IL8 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
IL8 MUTATED 0 0 5 1
IL8 WILD-TYPE 112 96 87 185

Figure S5290.  Get High-res Image Gene #2082: 'IL8 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'IL8 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00979 (Fisher's exact test), Q value = 0.094

Table S21855.  Gene #2082: 'IL8 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
IL8 MUTATED 1 0 3 0 2 0 0
IL8 WILD-TYPE 59 50 46 40 61 125 99

Figure S5291.  Get High-res Image Gene #2082: 'IL8 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'IL8 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.23 (Fisher's exact test), Q value = 0.55

Table S21856.  Gene #2082: 'IL8 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
IL8 MUTATED 1 3 0 2
IL8 WILD-TYPE 129 75 68 194
'IL8 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0339 (Fisher's exact test), Q value = 0.19

Table S21857.  Gene #2082: 'IL8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
IL8 MUTATED 0 4 0 0 2 0 0 0 0
IL8 WILD-TYPE 40 58 28 80 67 48 43 28 74

Figure S5292.  Get High-res Image Gene #2082: 'IL8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'IL8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.872 (Fisher's exact test), Q value = 1

Table S21858.  Gene #2082: 'IL8 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
IL8 MUTATED 1 1 0 1
IL8 WILD-TYPE 32 30 27 18
'IL8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.558 (Fisher's exact test), Q value = 0.87

Table S21859.  Gene #2082: 'IL8 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
IL8 MUTATED 3 0 0 0
IL8 WILD-TYPE 51 10 24 22
'CLTCL1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0609 (Fisher's exact test), Q value = 0.27

Table S21860.  Gene #2083: 'CLTCL1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
CLTCL1 MUTATED 3 1 0 3
CLTCL1 WILD-TYPE 43 57 64 40
'CLTCL1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.796 (Fisher's exact test), Q value = 1

Table S21861.  Gene #2083: 'CLTCL1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
CLTCL1 MUTATED 2 2 3
CLTCL1 WILD-TYPE 49 81 74
'CLTCL1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.157 (Fisher's exact test), Q value = 0.45

Table S21862.  Gene #2083: 'CLTCL1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
CLTCL1 MUTATED 12 4 3 0
CLTCL1 WILD-TYPE 166 179 98 20
'CLTCL1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.722 (Fisher's exact test), Q value = 0.99

Table S21863.  Gene #2083: 'CLTCL1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
CLTCL1 MUTATED 3 4 6
CLTCL1 WILD-TYPE 84 76 94
'CLTCL1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.949 (Fisher's exact test), Q value = 1

Table S21864.  Gene #2083: 'CLTCL1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
CLTCL1 MUTATED 4 6 6
CLTCL1 WILD-TYPE 85 154 132
'CLTCL1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.944 (Fisher's exact test), Q value = 1

Table S21865.  Gene #2083: 'CLTCL1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
CLTCL1 MUTATED 7 6 3
CLTCL1 WILD-TYPE 175 127 69
'CLTCL1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.977 (Fisher's exact test), Q value = 1

Table S21866.  Gene #2083: 'CLTCL1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
CLTCL1 MUTATED 5 4 4 7
CLTCL1 WILD-TYPE 107 92 88 179
'CLTCL1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.434 (Fisher's exact test), Q value = 0.76

Table S21867.  Gene #2083: 'CLTCL1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
CLTCL1 MUTATED 4 2 3 3 2 2 4
CLTCL1 WILD-TYPE 56 48 46 37 61 123 95
'CLTCL1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0688 (Fisher's exact test), Q value = 0.28

Table S21868.  Gene #2083: 'CLTCL1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
CLTCL1 MUTATED 10 3 0 7
CLTCL1 WILD-TYPE 120 75 68 189
'CLTCL1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.215 (Fisher's exact test), Q value = 0.53

Table S21869.  Gene #2083: 'CLTCL1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
CLTCL1 MUTATED 2 3 3 4 3 1 0 3 1
CLTCL1 WILD-TYPE 38 59 25 76 66 47 43 25 73
'CLTCL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.781 (Fisher's exact test), Q value = 1

Table S21870.  Gene #2083: 'CLTCL1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
CLTCL1 MUTATED 1 0 1 1
CLTCL1 WILD-TYPE 32 31 26 18
'CLTCL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.693 (Fisher's exact test), Q value = 0.97

Table S21871.  Gene #2083: 'CLTCL1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
CLTCL1 MUTATED 1 0 1 1
CLTCL1 WILD-TYPE 53 10 23 21
'DCTN4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.219 (Fisher's exact test), Q value = 0.53

Table S21872.  Gene #2084: 'DCTN4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
DCTN4 MUTATED 2 1 2 1
DCTN4 WILD-TYPE 176 182 99 19
'DCTN4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0553 (Fisher's exact test), Q value = 0.26

Table S21873.  Gene #2084: 'DCTN4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
DCTN4 MUTATED 4 1 0
DCTN4 WILD-TYPE 83 79 100
'DCTN4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.137 (Fisher's exact test), Q value = 0.41

Table S21874.  Gene #2084: 'DCTN4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
DCTN4 MUTATED 0 1 4
DCTN4 WILD-TYPE 89 159 134
'DCTN4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.854 (Fisher's exact test), Q value = 1

Table S21875.  Gene #2084: 'DCTN4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
DCTN4 MUTATED 3 1 1
DCTN4 WILD-TYPE 179 132 71
'DCTN4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.557 (Fisher's exact test), Q value = 0.87

Table S21876.  Gene #2084: 'DCTN4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
DCTN4 MUTATED 2 1 2 1
DCTN4 WILD-TYPE 110 95 90 185
'DCTN4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.163 (Fisher's exact test), Q value = 0.46

Table S21877.  Gene #2084: 'DCTN4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
DCTN4 MUTATED 0 1 2 1 1 0 1
DCTN4 WILD-TYPE 60 49 47 39 62 125 98
'DCTN4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.13 (Fisher's exact test), Q value = 0.4

Table S21878.  Gene #2084: 'DCTN4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
DCTN4 MUTATED 1 3 1 1
DCTN4 WILD-TYPE 129 75 67 195
'DCTN4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.168 (Fisher's exact test), Q value = 0.46

Table S21879.  Gene #2084: 'DCTN4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
DCTN4 MUTATED 0 3 0 0 2 0 1 0 0
DCTN4 WILD-TYPE 40 59 28 80 67 48 42 28 74
'KLRK1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0323 (Fisher's exact test), Q value = 0.18

Table S21880.  Gene #2085: 'KLRK1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
KLRK1 MUTATED 3 0 0 1
KLRK1 WILD-TYPE 43 58 64 42

Figure S5293.  Get High-res Image Gene #2085: 'KLRK1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'KLRK1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00296 (Fisher's exact test), Q value = 0.049

Table S21881.  Gene #2085: 'KLRK1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
KLRK1 MUTATED 4 0 0
KLRK1 WILD-TYPE 47 83 77

Figure S5294.  Get High-res Image Gene #2085: 'KLRK1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'KLRK1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0247 (Fisher's exact test), Q value = 0.16

Table S21882.  Gene #2085: 'KLRK1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
KLRK1 MUTATED 7 0 1 0
KLRK1 WILD-TYPE 171 183 100 20

Figure S5295.  Get High-res Image Gene #2085: 'KLRK1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'KLRK1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.193 (Fisher's exact test), Q value = 0.5

Table S21883.  Gene #2085: 'KLRK1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
KLRK1 MUTATED 1 0 4
KLRK1 WILD-TYPE 86 80 96
'KLRK1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.374 (Fisher's exact test), Q value = 0.7

Table S21884.  Gene #2085: 'KLRK1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
KLRK1 MUTATED 0 2 3
KLRK1 WILD-TYPE 89 158 135
'KLRK1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.169 (Fisher's exact test), Q value = 0.46

Table S21885.  Gene #2085: 'KLRK1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
KLRK1 MUTATED 3 0 2
KLRK1 WILD-TYPE 179 133 70
'KLRK1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.298 (Fisher's exact test), Q value = 0.63

Table S21886.  Gene #2085: 'KLRK1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
KLRK1 MUTATED 0 3 1 4
KLRK1 WILD-TYPE 112 93 91 182
'KLRK1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0563 (Fisher's exact test), Q value = 0.26

Table S21887.  Gene #2085: 'KLRK1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
KLRK1 MUTATED 0 1 2 1 0 0 4
KLRK1 WILD-TYPE 60 49 47 39 63 125 95
'KLRK1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.828 (Fisher's exact test), Q value = 1

Table S21888.  Gene #2085: 'KLRK1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
KLRK1 MUTATED 3 1 0 3
KLRK1 WILD-TYPE 127 77 68 193
'KLRK1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.69 (Fisher's exact test), Q value = 0.97

Table S21889.  Gene #2085: 'KLRK1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
KLRK1 MUTATED 1 1 0 1 2 0 1 1 0
KLRK1 WILD-TYPE 39 61 28 79 67 48 42 27 74
'MGAT5 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0157 (Fisher's exact test), Q value = 0.12

Table S21890.  Gene #2086: 'MGAT5 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
MGAT5 MUTATED 1 0 0 3
MGAT5 WILD-TYPE 45 58 64 40

Figure S5296.  Get High-res Image Gene #2086: 'MGAT5 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'MGAT5 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.18 (Fisher's exact test), Q value = 0.48

Table S21891.  Gene #2086: 'MGAT5 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
MGAT5 MUTATED 2 0 2
MGAT5 WILD-TYPE 49 83 75
'MGAT5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.567 (Fisher's exact test), Q value = 0.87

Table S21892.  Gene #2086: 'MGAT5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
MGAT5 MUTATED 7 3 2 0
MGAT5 WILD-TYPE 171 180 99 20
'MGAT5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.297 (Fisher's exact test), Q value = 0.63

Table S21893.  Gene #2086: 'MGAT5 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
MGAT5 MUTATED 5 1 3
MGAT5 WILD-TYPE 82 79 97
'MGAT5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.869 (Fisher's exact test), Q value = 1

Table S21894.  Gene #2086: 'MGAT5 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
MGAT5 MUTATED 2 6 4
MGAT5 WILD-TYPE 87 154 134
'MGAT5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.429 (Fisher's exact test), Q value = 0.76

Table S21895.  Gene #2086: 'MGAT5 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
MGAT5 MUTATED 5 3 4
MGAT5 WILD-TYPE 177 130 68
'MGAT5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.304 (Fisher's exact test), Q value = 0.63

Table S21896.  Gene #2086: 'MGAT5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
MGAT5 MUTATED 2 3 5 3
MGAT5 WILD-TYPE 110 93 87 183
'MGAT5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.014 (Fisher's exact test), Q value = 0.12

Table S21897.  Gene #2086: 'MGAT5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
MGAT5 MUTATED 0 2 3 3 1 0 4
MGAT5 WILD-TYPE 60 48 46 37 62 125 95

Figure S5297.  Get High-res Image Gene #2086: 'MGAT5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'MGAT5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.49 (Fisher's exact test), Q value = 0.82

Table S21898.  Gene #2086: 'MGAT5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
MGAT5 MUTATED 4 3 0 6
MGAT5 WILD-TYPE 126 75 68 190
'MGAT5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.026 (Fisher's exact test), Q value = 0.16

Table S21899.  Gene #2086: 'MGAT5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
MGAT5 MUTATED 1 4 1 0 5 2 0 0 0
MGAT5 WILD-TYPE 39 58 27 80 64 46 43 28 74

Figure S5298.  Get High-res Image Gene #2086: 'MGAT5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'MGAT5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.699 (Fisher's exact test), Q value = 0.97

Table S21900.  Gene #2086: 'MGAT5 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
MGAT5 MUTATED 2 1 0 1
MGAT5 WILD-TYPE 31 30 27 18
'MGAT5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.869 (Fisher's exact test), Q value = 1

Table S21901.  Gene #2086: 'MGAT5 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
MGAT5 MUTATED 3 0 1 0
MGAT5 WILD-TYPE 51 10 23 22
'SPANXN3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.386 (Fisher's exact test), Q value = 0.71

Table S21902.  Gene #2087: 'SPANXN3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
SPANXN3 MUTATED 5 4 0 0
SPANXN3 WILD-TYPE 173 179 101 20
'SPANXN3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.741 (Fisher's exact test), Q value = 1

Table S21903.  Gene #2087: 'SPANXN3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
SPANXN3 MUTATED 3 3 2
SPANXN3 WILD-TYPE 84 77 98
'SPANXN3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S21904.  Gene #2087: 'SPANXN3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
SPANXN3 MUTATED 2 4 3
SPANXN3 WILD-TYPE 87 156 135
'SPANXN3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.824 (Fisher's exact test), Q value = 1

Table S21905.  Gene #2087: 'SPANXN3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
SPANXN3 MUTATED 4 4 1
SPANXN3 WILD-TYPE 178 129 71
'SPANXN3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.208 (Fisher's exact test), Q value = 0.51

Table S21906.  Gene #2087: 'SPANXN3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
SPANXN3 MUTATED 4 2 2 1
SPANXN3 WILD-TYPE 108 94 90 185
'SPANXN3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0197 (Fisher's exact test), Q value = 0.14

Table S21907.  Gene #2087: 'SPANXN3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
SPANXN3 MUTATED 2 1 3 1 2 0 0
SPANXN3 WILD-TYPE 58 49 46 39 61 125 99

Figure S5299.  Get High-res Image Gene #2087: 'SPANXN3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'SPANXN3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.422 (Fisher's exact test), Q value = 0.75

Table S21908.  Gene #2087: 'SPANXN3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
SPANXN3 MUTATED 4 1 2 2
SPANXN3 WILD-TYPE 126 77 66 194
'SPANXN3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.8 (Fisher's exact test), Q value = 1

Table S21909.  Gene #2087: 'SPANXN3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
SPANXN3 MUTATED 1 1 0 1 3 2 0 0 1
SPANXN3 WILD-TYPE 39 61 28 79 66 46 43 28 73
'SPANXN3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.624 (Fisher's exact test), Q value = 0.92

Table S21910.  Gene #2087: 'SPANXN3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
SPANXN3 MUTATED 0 1 1 1
SPANXN3 WILD-TYPE 33 30 26 18
'SPANXN3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0378 (Fisher's exact test), Q value = 0.2

Table S21911.  Gene #2087: 'SPANXN3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
SPANXN3 MUTATED 0 1 0 2
SPANXN3 WILD-TYPE 54 9 24 20

Figure S5300.  Get High-res Image Gene #2087: 'SPANXN3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

'CYP27B1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.118 (Fisher's exact test), Q value = 0.38

Table S21912.  Gene #2088: 'CYP27B1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
CYP27B1 MUTATED 2 0 0 1
CYP27B1 WILD-TYPE 44 58 64 42
'CYP27B1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0139 (Fisher's exact test), Q value = 0.12

Table S21913.  Gene #2088: 'CYP27B1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
CYP27B1 MUTATED 3 0 0
CYP27B1 WILD-TYPE 48 83 77

Figure S5301.  Get High-res Image Gene #2088: 'CYP27B1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'CYP27B1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0243 (Fisher's exact test), Q value = 0.16

Table S21914.  Gene #2088: 'CYP27B1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
CYP27B1 MUTATED 7 0 1 0
CYP27B1 WILD-TYPE 171 183 100 20

Figure S5302.  Get High-res Image Gene #2088: 'CYP27B1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'CYP27B1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.385 (Fisher's exact test), Q value = 0.71

Table S21915.  Gene #2088: 'CYP27B1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
CYP27B1 MUTATED 2 0 3
CYP27B1 WILD-TYPE 85 80 97
'CYP27B1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.264 (Fisher's exact test), Q value = 0.59

Table S21916.  Gene #2088: 'CYP27B1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
CYP27B1 MUTATED 2 1 4
CYP27B1 WILD-TYPE 87 159 134
'CYP27B1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.886 (Fisher's exact test), Q value = 1

Table S21917.  Gene #2088: 'CYP27B1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
CYP27B1 MUTATED 3 3 1
CYP27B1 WILD-TYPE 179 130 71
'CYP27B1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.289 (Fisher's exact test), Q value = 0.62

Table S21918.  Gene #2088: 'CYP27B1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
CYP27B1 MUTATED 0 3 2 3
CYP27B1 WILD-TYPE 112 93 90 183
'CYP27B1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.102 (Fisher's exact test), Q value = 0.35

Table S21919.  Gene #2088: 'CYP27B1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
CYP27B1 MUTATED 0 2 2 0 1 0 3
CYP27B1 WILD-TYPE 60 48 47 40 62 125 96
'CYP27B1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.903 (Fisher's exact test), Q value = 1

Table S21920.  Gene #2088: 'CYP27B1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
CYP27B1 MUTATED 2 1 0 4
CYP27B1 WILD-TYPE 128 77 68 192
'CYP27B1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.728 (Fisher's exact test), Q value = 1

Table S21921.  Gene #2088: 'CYP27B1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
CYP27B1 MUTATED 1 0 0 2 2 0 0 1 1
CYP27B1 WILD-TYPE 39 62 28 78 67 48 43 27 73
'CASC5 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.112 (Fisher's exact test), Q value = 0.37

Table S21922.  Gene #2089: 'CASC5 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
CASC5 MUTATED 2 0 1 3
CASC5 WILD-TYPE 44 58 63 40
'CASC5 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.88 (Fisher's exact test), Q value = 1

Table S21923.  Gene #2089: 'CASC5 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
CASC5 MUTATED 1 2 3
CASC5 WILD-TYPE 50 81 74
'CASC5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00018 (Fisher's exact test), Q value = 0.0078

Table S21924.  Gene #2089: 'CASC5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
CASC5 MUTATED 18 2 1 1
CASC5 WILD-TYPE 160 181 100 19

Figure S5303.  Get High-res Image Gene #2089: 'CASC5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'CASC5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.106 (Fisher's exact test), Q value = 0.36

Table S21925.  Gene #2089: 'CASC5 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
CASC5 MUTATED 9 2 5
CASC5 WILD-TYPE 78 78 95
'CASC5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.185 (Fisher's exact test), Q value = 0.49

Table S21926.  Gene #2089: 'CASC5 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
CASC5 MUTATED 1 8 8
CASC5 WILD-TYPE 88 152 130
'CASC5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.345 (Fisher's exact test), Q value = 0.67

Table S21927.  Gene #2089: 'CASC5 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
CASC5 MUTATED 8 8 1
CASC5 WILD-TYPE 174 125 71
'CASC5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.43 (Fisher's exact test), Q value = 0.76

Table S21928.  Gene #2089: 'CASC5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
CASC5 MUTATED 3 4 7 8
CASC5 WILD-TYPE 109 92 85 178
'CASC5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00127 (Fisher's exact test), Q value = 0.029

Table S21929.  Gene #2089: 'CASC5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
CASC5 MUTATED 4 1 9 0 1 3 4
CASC5 WILD-TYPE 56 49 40 40 62 122 95

Figure S5304.  Get High-res Image Gene #2089: 'CASC5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CASC5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.135 (Fisher's exact test), Q value = 0.41

Table S21930.  Gene #2089: 'CASC5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
CASC5 MUTATED 9 3 0 10
CASC5 WILD-TYPE 121 75 68 186
'CASC5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0252 (Fisher's exact test), Q value = 0.16

Table S21931.  Gene #2089: 'CASC5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
CASC5 MUTATED 0 5 3 1 7 3 0 0 3
CASC5 WILD-TYPE 40 57 25 79 62 45 43 28 71

Figure S5305.  Get High-res Image Gene #2089: 'CASC5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'CASC5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00365 (Fisher's exact test), Q value = 0.055

Table S21932.  Gene #2089: 'CASC5 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
CASC5 MUTATED 1 0 0 4
CASC5 WILD-TYPE 32 31 27 15

Figure S5306.  Get High-res Image Gene #2089: 'CASC5 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'CASC5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.575 (Fisher's exact test), Q value = 0.88

Table S21933.  Gene #2089: 'CASC5 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
CASC5 MUTATED 3 0 2 0
CASC5 WILD-TYPE 51 10 22 22
'PRKCG MUTATION STATUS' versus 'MRNA_CNMF'

P value = 8e-04 (Fisher's exact test), Q value = 0.021

Table S21934.  Gene #2090: 'PRKCG MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
PRKCG MUTATED 7 1 0 2
PRKCG WILD-TYPE 39 57 64 41

Figure S5307.  Get High-res Image Gene #2090: 'PRKCG MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'PRKCG MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00498 (Fisher's exact test), Q value = 0.064

Table S21935.  Gene #2090: 'PRKCG MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
PRKCG MUTATED 7 2 1
PRKCG WILD-TYPE 44 81 76

Figure S5308.  Get High-res Image Gene #2090: 'PRKCG MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'PRKCG MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0166 (Fisher's exact test), Q value = 0.13

Table S21936.  Gene #2090: 'PRKCG MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
PRKCG MUTATED 15 3 6 0
PRKCG WILD-TYPE 163 180 95 20

Figure S5309.  Get High-res Image Gene #2090: 'PRKCG MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'PRKCG MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.24 (Fisher's exact test), Q value = 0.56

Table S21937.  Gene #2090: 'PRKCG MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
PRKCG MUTATED 4 2 8
PRKCG WILD-TYPE 83 78 92
'PRKCG MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.226 (Fisher's exact test), Q value = 0.54

Table S21938.  Gene #2090: 'PRKCG MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
PRKCG MUTATED 2 7 10
PRKCG WILD-TYPE 87 153 128
'PRKCG MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S21939.  Gene #2090: 'PRKCG MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
PRKCG MUTATED 9 7 3
PRKCG WILD-TYPE 173 126 69
'PRKCG MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.222 (Fisher's exact test), Q value = 0.54

Table S21940.  Gene #2090: 'PRKCG MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
PRKCG MUTATED 2 7 6 9
PRKCG WILD-TYPE 110 89 86 177
'PRKCG MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.101 (Fisher's exact test), Q value = 0.35

Table S21941.  Gene #2090: 'PRKCG MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
PRKCG MUTATED 2 3 6 1 3 2 7
PRKCG WILD-TYPE 58 47 43 39 60 123 92
'PRKCG MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.543 (Fisher's exact test), Q value = 0.86

Table S21942.  Gene #2090: 'PRKCG MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
PRKCG MUTATED 6 5 1 10
PRKCG WILD-TYPE 124 73 67 186
'PRKCG MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0189 (Fisher's exact test), Q value = 0.14

Table S21943.  Gene #2090: 'PRKCG MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
PRKCG MUTATED 1 3 2 3 10 0 1 1 1
PRKCG WILD-TYPE 39 59 26 77 59 48 42 27 73

Figure S5310.  Get High-res Image Gene #2090: 'PRKCG MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'PRKCG MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0851 (Fisher's exact test), Q value = 0.32

Table S21944.  Gene #2090: 'PRKCG MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
PRKCG MUTATED 0 1 0 2
PRKCG WILD-TYPE 33 30 27 17
'PRKCG MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S21945.  Gene #2090: 'PRKCG MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
PRKCG MUTATED 2 0 1 0
PRKCG WILD-TYPE 52 10 23 22
'COL11A1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.331 (Fisher's exact test), Q value = 0.66

Table S21946.  Gene #2091: 'COL11A1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
COL11A1 MUTATED 6 2 5 4
COL11A1 WILD-TYPE 40 56 59 39
'COL11A1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.405 (Fisher's exact test), Q value = 0.73

Table S21947.  Gene #2091: 'COL11A1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
COL11A1 MUTATED 6 7 4
COL11A1 WILD-TYPE 45 76 73
'COL11A1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00019 (Fisher's exact test), Q value = 0.008

Table S21948.  Gene #2091: 'COL11A1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
COL11A1 MUTATED 34 11 7 0
COL11A1 WILD-TYPE 144 172 94 20

Figure S5311.  Get High-res Image Gene #2091: 'COL11A1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'COL11A1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0403 (Fisher's exact test), Q value = 0.21

Table S21949.  Gene #2091: 'COL11A1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
COL11A1 MUTATED 10 5 19
COL11A1 WILD-TYPE 77 75 81

Figure S5312.  Get High-res Image Gene #2091: 'COL11A1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'COL11A1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0776 (Fisher's exact test), Q value = 0.3

Table S21950.  Gene #2091: 'COL11A1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
COL11A1 MUTATED 6 15 22
COL11A1 WILD-TYPE 83 145 116
'COL11A1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.849 (Fisher's exact test), Q value = 1

Table S21951.  Gene #2091: 'COL11A1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
COL11A1 MUTATED 19 15 9
COL11A1 WILD-TYPE 163 118 63
'COL11A1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.14 (Fisher's exact test), Q value = 0.42

Table S21952.  Gene #2091: 'COL11A1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
COL11A1 MUTATED 8 16 11 17
COL11A1 WILD-TYPE 104 80 81 169
'COL11A1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S21953.  Gene #2091: 'COL11A1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
COL11A1 MUTATED 3 9 15 2 6 4 13
COL11A1 WILD-TYPE 57 41 34 38 57 121 86

Figure S5313.  Get High-res Image Gene #2091: 'COL11A1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'COL11A1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.378 (Fisher's exact test), Q value = 0.71

Table S21954.  Gene #2091: 'COL11A1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
COL11A1 MUTATED 18 7 4 21
COL11A1 WILD-TYPE 112 71 64 175
'COL11A1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.117 (Fisher's exact test), Q value = 0.38

Table S21955.  Gene #2091: 'COL11A1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
COL11A1 MUTATED 4 8 5 5 13 2 6 1 6
COL11A1 WILD-TYPE 36 54 23 75 56 46 37 27 68
'COL11A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.109 (Fisher's exact test), Q value = 0.36

Table S21956.  Gene #2091: 'COL11A1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
COL11A1 MUTATED 3 2 1 5
COL11A1 WILD-TYPE 30 29 26 14
'COL11A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.813 (Fisher's exact test), Q value = 1

Table S21957.  Gene #2091: 'COL11A1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
COL11A1 MUTATED 6 0 2 3
COL11A1 WILD-TYPE 48 10 22 19
'OR5L2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0873 (Fisher's exact test), Q value = 0.32

Table S21958.  Gene #2092: 'OR5L2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
OR5L2 MUTATED 10 2 3 0
OR5L2 WILD-TYPE 168 181 98 20
'OR5L2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.175 (Fisher's exact test), Q value = 0.47

Table S21959.  Gene #2092: 'OR5L2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
OR5L2 MUTATED 6 1 6
OR5L2 WILD-TYPE 81 79 94
'OR5L2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.651 (Fisher's exact test), Q value = 0.94

Table S21960.  Gene #2092: 'OR5L2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
OR5L2 MUTATED 2 4 6
OR5L2 WILD-TYPE 87 156 132
'OR5L2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.8 (Fisher's exact test), Q value = 1

Table S21961.  Gene #2092: 'OR5L2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
OR5L2 MUTATED 7 3 2
OR5L2 WILD-TYPE 175 130 70
'OR5L2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0354 (Fisher's exact test), Q value = 0.19

Table S21962.  Gene #2092: 'OR5L2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
OR5L2 MUTATED 2 6 5 2
OR5L2 WILD-TYPE 110 90 87 184

Figure S5314.  Get High-res Image Gene #2092: 'OR5L2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'OR5L2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00045 (Fisher's exact test), Q value = 0.014

Table S21963.  Gene #2092: 'OR5L2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
OR5L2 MUTATED 5 3 5 0 1 1 0
OR5L2 WILD-TYPE 55 47 44 40 62 124 99

Figure S5315.  Get High-res Image Gene #2092: 'OR5L2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'OR5L2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0351 (Fisher's exact test), Q value = 0.19

Table S21964.  Gene #2092: 'OR5L2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
OR5L2 MUTATED 6 2 5 2
OR5L2 WILD-TYPE 124 76 63 194

Figure S5316.  Get High-res Image Gene #2092: 'OR5L2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'OR5L2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0845 (Fisher's exact test), Q value = 0.31

Table S21965.  Gene #2092: 'OR5L2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
OR5L2 MUTATED 0 5 1 1 4 0 3 0 1
OR5L2 WILD-TYPE 40 57 27 79 65 48 40 28 73
'OR5L2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.137 (Fisher's exact test), Q value = 0.41

Table S21966.  Gene #2092: 'OR5L2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
OR5L2 MUTATED 1 0 0 2
OR5L2 WILD-TYPE 32 31 27 17
'OR5L2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.564 (Fisher's exact test), Q value = 0.87

Table S21967.  Gene #2092: 'OR5L2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
OR5L2 MUTATED 3 0 0 0
OR5L2 WILD-TYPE 51 10 24 22
'EHBP1L1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.331 (Fisher's exact test), Q value = 0.66

Table S21968.  Gene #2093: 'EHBP1L1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
EHBP1L1 MUTATED 5 1 2 0
EHBP1L1 WILD-TYPE 173 182 99 20
'EHBP1L1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.291 (Fisher's exact test), Q value = 0.62

Table S21969.  Gene #2093: 'EHBP1L1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
EHBP1L1 MUTATED 3 0 3
EHBP1L1 WILD-TYPE 84 80 97
'EHBP1L1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.447 (Fisher's exact test), Q value = 0.77

Table S21970.  Gene #2093: 'EHBP1L1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
EHBP1L1 MUTATED 2 1 3
EHBP1L1 WILD-TYPE 87 159 135
'EHBP1L1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.413 (Fisher's exact test), Q value = 0.74

Table S21971.  Gene #2093: 'EHBP1L1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
EHBP1L1 MUTATED 3 1 2
EHBP1L1 WILD-TYPE 179 132 70
'EHBP1L1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0199 (Fisher's exact test), Q value = 0.14

Table S21972.  Gene #2093: 'EHBP1L1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
EHBP1L1 MUTATED 0 4 3 1
EHBP1L1 WILD-TYPE 112 92 89 185

Figure S5317.  Get High-res Image Gene #2093: 'EHBP1L1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'EHBP1L1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00654 (Fisher's exact test), Q value = 0.074

Table S21973.  Gene #2093: 'EHBP1L1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
EHBP1L1 MUTATED 0 2 3 2 0 0 1
EHBP1L1 WILD-TYPE 60 48 46 38 63 125 98

Figure S5318.  Get High-res Image Gene #2093: 'EHBP1L1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'EHBP1L1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.635 (Fisher's exact test), Q value = 0.93

Table S21974.  Gene #2093: 'EHBP1L1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
EHBP1L1 MUTATED 3 2 0 3
EHBP1L1 WILD-TYPE 127 76 68 193
'EHBP1L1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.624 (Fisher's exact test), Q value = 0.92

Table S21975.  Gene #2093: 'EHBP1L1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
EHBP1L1 MUTATED 0 2 1 1 3 0 0 0 1
EHBP1L1 WILD-TYPE 40 60 27 79 66 48 43 28 73
'EHBP1L1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.871 (Fisher's exact test), Q value = 1

Table S21976.  Gene #2093: 'EHBP1L1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
EHBP1L1 MUTATED 1 1 0 1
EHBP1L1 WILD-TYPE 32 30 27 18
'EHBP1L1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.693 (Fisher's exact test), Q value = 0.97

Table S21977.  Gene #2093: 'EHBP1L1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
EHBP1L1 MUTATED 1 0 1 1
EHBP1L1 WILD-TYPE 53 10 23 21
'CNOT6L MUTATION STATUS' versus 'CN_CNMF'

P value = 0.279 (Fisher's exact test), Q value = 0.61

Table S21978.  Gene #2094: 'CNOT6L MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
CNOT6L MUTATED 5 2 0 0
CNOT6L WILD-TYPE 173 181 101 20
'CNOT6L MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S21979.  Gene #2094: 'CNOT6L MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
CNOT6L MUTATED 1 1 2
CNOT6L WILD-TYPE 86 79 98
'CNOT6L MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.295 (Fisher's exact test), Q value = 0.62

Table S21980.  Gene #2094: 'CNOT6L MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
CNOT6L MUTATED 0 4 1
CNOT6L WILD-TYPE 89 156 137
'CNOT6L MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0292 (Fisher's exact test), Q value = 0.17

Table S21981.  Gene #2094: 'CNOT6L MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
CNOT6L MUTATED 0 4 1
CNOT6L WILD-TYPE 182 129 71

Figure S5319.  Get High-res Image Gene #2094: 'CNOT6L MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'CNOT6L MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.589 (Fisher's exact test), Q value = 0.89

Table S21982.  Gene #2094: 'CNOT6L MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
CNOT6L MUTATED 1 2 0 4
CNOT6L WILD-TYPE 111 94 92 182
'CNOT6L MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0626 (Fisher's exact test), Q value = 0.27

Table S21983.  Gene #2094: 'CNOT6L MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
CNOT6L MUTATED 1 2 0 0 0 0 4
CNOT6L WILD-TYPE 59 48 49 40 63 125 95
'CNOT6L MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.792 (Fisher's exact test), Q value = 1

Table S21984.  Gene #2094: 'CNOT6L MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
CNOT6L MUTATED 2 0 1 4
CNOT6L WILD-TYPE 128 78 67 192
'CNOT6L MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.763 (Fisher's exact test), Q value = 1

Table S21985.  Gene #2094: 'CNOT6L MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
CNOT6L MUTATED 1 0 1 1 2 0 1 0 1
CNOT6L WILD-TYPE 39 62 27 79 67 48 42 28 73
'C3ORF27 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.414 (Fisher's exact test), Q value = 0.74

Table S21986.  Gene #2095: 'C3ORF27 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
C3ORF27 MUTATED 2 0 1 0
C3ORF27 WILD-TYPE 176 183 100 20
'C3ORF27 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.795 (Fisher's exact test), Q value = 1

Table S21987.  Gene #2095: 'C3ORF27 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
C3ORF27 MUTATED 0 2 1
C3ORF27 WILD-TYPE 89 158 137
'C3ORF27 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.593 (Fisher's exact test), Q value = 0.9

Table S21988.  Gene #2095: 'C3ORF27 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
C3ORF27 MUTATED 1 2 0
C3ORF27 WILD-TYPE 181 131 72
'C3ORF27 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.52 (Fisher's exact test), Q value = 0.84

Table S21989.  Gene #2095: 'C3ORF27 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
C3ORF27 MUTATED 0 0 1 2
C3ORF27 WILD-TYPE 112 96 91 184
'C3ORF27 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S21990.  Gene #2095: 'C3ORF27 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
C3ORF27 MUTATED 0 0 0 0 1 1 1
C3ORF27 WILD-TYPE 60 50 49 40 62 124 98
'C3ORF27 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S21991.  Gene #2095: 'C3ORF27 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
C3ORF27 MUTATED 1 0 0 2
C3ORF27 WILD-TYPE 129 78 68 194
'C3ORF27 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0294 (Fisher's exact test), Q value = 0.18

Table S21992.  Gene #2095: 'C3ORF27 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
C3ORF27 MUTATED 1 0 1 0 0 0 0 1 0
C3ORF27 WILD-TYPE 39 62 27 80 69 48 43 27 74

Figure S5320.  Get High-res Image Gene #2095: 'C3ORF27 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'TNFRSF13B MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.368 (Fisher's exact test), Q value = 0.7

Table S21993.  Gene #2096: 'TNFRSF13B MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
TNFRSF13B MUTATED 2 1 0 1
TNFRSF13B WILD-TYPE 44 57 64 42
'TNFRSF13B MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.232 (Fisher's exact test), Q value = 0.55

Table S21994.  Gene #2096: 'TNFRSF13B MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
TNFRSF13B MUTATED 2 2 0
TNFRSF13B WILD-TYPE 49 81 77
'TNFRSF13B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0921 (Fisher's exact test), Q value = 0.33

Table S21995.  Gene #2096: 'TNFRSF13B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
TNFRSF13B MUTATED 4 0 3 0
TNFRSF13B WILD-TYPE 174 183 98 20
'TNFRSF13B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.515 (Fisher's exact test), Q value = 0.84

Table S21996.  Gene #2096: 'TNFRSF13B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
TNFRSF13B MUTATED 2 0 1
TNFRSF13B WILD-TYPE 85 80 99
'TNFRSF13B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.733 (Fisher's exact test), Q value = 1

Table S21997.  Gene #2096: 'TNFRSF13B MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
TNFRSF13B MUTATED 2 2 1
TNFRSF13B WILD-TYPE 87 158 137
'TNFRSF13B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.716 (Fisher's exact test), Q value = 0.99

Table S21998.  Gene #2096: 'TNFRSF13B MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
TNFRSF13B MUTATED 3 2 0
TNFRSF13B WILD-TYPE 179 131 72
'TNFRSF13B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S21999.  Gene #2096: 'TNFRSF13B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
TNFRSF13B MUTATED 2 1 1 3
TNFRSF13B WILD-TYPE 110 95 91 183
'TNFRSF13B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.617 (Fisher's exact test), Q value = 0.92

Table S22000.  Gene #2096: 'TNFRSF13B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
TNFRSF13B MUTATED 0 0 1 1 1 1 3
TNFRSF13B WILD-TYPE 60 50 48 39 62 124 96
'TNFRSF13B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.349 (Fisher's exact test), Q value = 0.68

Table S22001.  Gene #2096: 'TNFRSF13B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
TNFRSF13B MUTATED 0 1 1 4
TNFRSF13B WILD-TYPE 130 77 67 192
'TNFRSF13B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.232 (Fisher's exact test), Q value = 0.55

Table S22002.  Gene #2096: 'TNFRSF13B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
TNFRSF13B MUTATED 0 1 1 0 2 0 1 1 0
TNFRSF13B WILD-TYPE 40 61 27 80 67 48 42 27 74
'OTUD4 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0224 (Fisher's exact test), Q value = 0.15

Table S22003.  Gene #2097: 'OTUD4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
OTUD4 MUTATED 2 0 0 3
OTUD4 WILD-TYPE 44 58 64 40

Figure S5321.  Get High-res Image Gene #2097: 'OTUD4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'OTUD4 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0189 (Fisher's exact test), Q value = 0.14

Table S22004.  Gene #2097: 'OTUD4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
OTUD4 MUTATED 4 1 0
OTUD4 WILD-TYPE 47 82 77

Figure S5322.  Get High-res Image Gene #2097: 'OTUD4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'OTUD4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00186 (Fisher's exact test), Q value = 0.036

Table S22005.  Gene #2097: 'OTUD4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
OTUD4 MUTATED 16 3 1 0
OTUD4 WILD-TYPE 162 180 100 20

Figure S5323.  Get High-res Image Gene #2097: 'OTUD4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'OTUD4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.28 (Fisher's exact test), Q value = 0.61

Table S22006.  Gene #2097: 'OTUD4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
OTUD4 MUTATED 5 2 8
OTUD4 WILD-TYPE 82 78 92
'OTUD4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.821 (Fisher's exact test), Q value = 1

Table S22007.  Gene #2097: 'OTUD4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
OTUD4 MUTATED 3 9 6
OTUD4 WILD-TYPE 86 151 132
'OTUD4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.16 (Fisher's exact test), Q value = 0.45

Table S22008.  Gene #2097: 'OTUD4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
OTUD4 MUTATED 6 10 2
OTUD4 WILD-TYPE 176 123 70
'OTUD4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.122 (Fisher's exact test), Q value = 0.39

Table S22009.  Gene #2097: 'OTUD4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
OTUD4 MUTATED 2 8 4 6
OTUD4 WILD-TYPE 110 88 88 180
'OTUD4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00055 (Fisher's exact test), Q value = 0.016

Table S22010.  Gene #2097: 'OTUD4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
OTUD4 MUTATED 3 3 6 1 0 0 7
OTUD4 WILD-TYPE 57 47 43 39 63 125 92

Figure S5324.  Get High-res Image Gene #2097: 'OTUD4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'OTUD4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.267 (Fisher's exact test), Q value = 0.59

Table S22011.  Gene #2097: 'OTUD4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
OTUD4 MUTATED 8 1 1 9
OTUD4 WILD-TYPE 122 77 67 187
'OTUD4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0425 (Fisher's exact test), Q value = 0.22

Table S22012.  Gene #2097: 'OTUD4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
OTUD4 MUTATED 1 1 1 1 8 1 4 0 2
OTUD4 WILD-TYPE 39 61 27 79 61 47 39 28 72

Figure S5325.  Get High-res Image Gene #2097: 'OTUD4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'MYO5A MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.316 (Fisher's exact test), Q value = 0.64

Table S22013.  Gene #2098: 'MYO5A MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
MYO5A MUTATED 2 1 2 4
MYO5A WILD-TYPE 44 57 62 39
'MYO5A MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.633 (Fisher's exact test), Q value = 0.93

Table S22014.  Gene #2098: 'MYO5A MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
MYO5A MUTATED 2 5 2
MYO5A WILD-TYPE 49 78 75
'MYO5A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0982 (Fisher's exact test), Q value = 0.34

Table S22015.  Gene #2098: 'MYO5A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
MYO5A MUTATED 12 4 7 0
MYO5A WILD-TYPE 166 179 94 20
'MYO5A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.738 (Fisher's exact test), Q value = 1

Table S22016.  Gene #2098: 'MYO5A MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
MYO5A MUTATED 6 4 4
MYO5A WILD-TYPE 81 76 96
'MYO5A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.39 (Fisher's exact test), Q value = 0.72

Table S22017.  Gene #2098: 'MYO5A MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
MYO5A MUTATED 6 5 7
MYO5A WILD-TYPE 83 155 131
'MYO5A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.772 (Fisher's exact test), Q value = 1

Table S22018.  Gene #2098: 'MYO5A MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
MYO5A MUTATED 9 7 2
MYO5A WILD-TYPE 173 126 70
'MYO5A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.178 (Fisher's exact test), Q value = 0.48

Table S22019.  Gene #2098: 'MYO5A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
MYO5A MUTATED 10 3 3 7
MYO5A WILD-TYPE 102 93 89 179
'MYO5A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.519 (Fisher's exact test), Q value = 0.84

Table S22020.  Gene #2098: 'MYO5A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
MYO5A MUTATED 5 2 2 4 2 4 4
MYO5A WILD-TYPE 55 48 47 36 61 121 95
'MYO5A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.874 (Fisher's exact test), Q value = 1

Table S22021.  Gene #2098: 'MYO5A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
MYO5A MUTATED 7 4 2 8
MYO5A WILD-TYPE 123 74 66 188
'MYO5A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.992 (Fisher's exact test), Q value = 1

Table S22022.  Gene #2098: 'MYO5A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
MYO5A MUTATED 1 3 1 4 4 3 2 1 2
MYO5A WILD-TYPE 39 59 27 76 65 45 41 27 72
'MYO5A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.832 (Fisher's exact test), Q value = 1

Table S22023.  Gene #2098: 'MYO5A MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
MYO5A MUTATED 1 2 1 0
MYO5A WILD-TYPE 32 29 26 19
'MYO5A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.542 (Fisher's exact test), Q value = 0.86

Table S22024.  Gene #2098: 'MYO5A MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
MYO5A MUTATED 2 0 0 2
MYO5A WILD-TYPE 52 10 24 20
'MNT MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0667 (Fisher's exact test), Q value = 0.28

Table S22025.  Gene #2099: 'MNT MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
MNT MUTATED 6 0 2 0
MNT WILD-TYPE 172 183 99 20
'MNT MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.29 (Fisher's exact test), Q value = 0.62

Table S22026.  Gene #2099: 'MNT MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
MNT MUTATED 3 0 3
MNT WILD-TYPE 84 80 97
'MNT MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.266 (Fisher's exact test), Q value = 0.59

Table S22027.  Gene #2099: 'MNT MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
MNT MUTATED 2 1 4
MNT WILD-TYPE 87 159 134
'MNT MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S22028.  Gene #2099: 'MNT MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
MNT MUTATED 4 2 1
MNT WILD-TYPE 178 131 71
'MNT MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.068 (Fisher's exact test), Q value = 0.28

Table S22029.  Gene #2099: 'MNT MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
MNT MUTATED 0 2 4 2
MNT WILD-TYPE 112 94 88 184
'MNT MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.269 (Fisher's exact test), Q value = 0.59

Table S22030.  Gene #2099: 'MNT MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
MNT MUTATED 0 1 3 0 1 1 2
MNT WILD-TYPE 60 49 46 40 62 124 97
'MNT MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.437 (Fisher's exact test), Q value = 0.76

Table S22031.  Gene #2099: 'MNT MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
MNT MUTATED 1 2 0 5
MNT WILD-TYPE 129 76 68 191
'MNT MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.229 (Fisher's exact test), Q value = 0.55

Table S22032.  Gene #2099: 'MNT MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
MNT MUTATED 0 2 0 2 4 0 0 0 0
MNT WILD-TYPE 40 60 28 78 65 48 43 28 74
'MNT MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0833 (Fisher's exact test), Q value = 0.31

Table S22033.  Gene #2099: 'MNT MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
MNT MUTATED 0 1 0 2
MNT WILD-TYPE 33 30 27 17
'MNT MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S22034.  Gene #2099: 'MNT MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
MNT MUTATED 2 0 1 0
MNT WILD-TYPE 52 10 23 22
'CAMK1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0654 (Fisher's exact test), Q value = 0.28

Table S22035.  Gene #2100: 'CAMK1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
CAMK1 MUTATED 1 0 0 2
CAMK1 WILD-TYPE 45 58 64 41
'CAMK1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.184 (Fisher's exact test), Q value = 0.48

Table S22036.  Gene #2100: 'CAMK1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
CAMK1 MUTATED 2 0 1
CAMK1 WILD-TYPE 49 83 76
'CAMK1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0611 (Fisher's exact test), Q value = 0.27

Table S22037.  Gene #2100: 'CAMK1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
CAMK1 MUTATED 7 1 0 0
CAMK1 WILD-TYPE 171 182 101 20
'CAMK1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S22038.  Gene #2100: 'CAMK1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
CAMK1 MUTATED 2 1 2
CAMK1 WILD-TYPE 85 79 98
'CAMK1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.735 (Fisher's exact test), Q value = 1

Table S22039.  Gene #2100: 'CAMK1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
CAMK1 MUTATED 1 3 4
CAMK1 WILD-TYPE 88 157 134
'CAMK1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.566 (Fisher's exact test), Q value = 0.87

Table S22040.  Gene #2100: 'CAMK1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
CAMK1 MUTATED 5 3 0
CAMK1 WILD-TYPE 177 130 72
'CAMK1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.676 (Fisher's exact test), Q value = 0.96

Table S22041.  Gene #2100: 'CAMK1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
CAMK1 MUTATED 1 3 1 3
CAMK1 WILD-TYPE 111 93 91 183
'CAMK1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.119 (Fisher's exact test), Q value = 0.39

Table S22042.  Gene #2100: 'CAMK1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
CAMK1 MUTATED 1 2 2 1 0 0 2
CAMK1 WILD-TYPE 59 48 47 39 63 125 97
'CAMK1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.386 (Fisher's exact test), Q value = 0.71

Table S22043.  Gene #2100: 'CAMK1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
CAMK1 MUTATED 4 1 0 2
CAMK1 WILD-TYPE 126 77 68 194
'CAMK1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.253 (Fisher's exact test), Q value = 0.58

Table S22044.  Gene #2100: 'CAMK1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
CAMK1 MUTATED 1 1 1 0 3 1 0 0 0
CAMK1 WILD-TYPE 39 61 27 80 66 47 43 28 74
'SRRM3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.664 (Fisher's exact test), Q value = 0.95

Table S22045.  Gene #2101: 'SRRM3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
SRRM3 MUTATED 2 1 0 0
SRRM3 WILD-TYPE 176 182 101 20
'SRRM3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S22046.  Gene #2101: 'SRRM3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
SRRM3 MUTATED 1 1 0 1
SRRM3 WILD-TYPE 111 95 92 185
'SRRM3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.151 (Fisher's exact test), Q value = 0.43

Table S22047.  Gene #2101: 'SRRM3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
SRRM3 MUTATED 1 1 1 0 0 0 0
SRRM3 WILD-TYPE 59 49 48 40 63 125 99
'SRRM3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.643 (Fisher's exact test), Q value = 0.93

Table S22048.  Gene #2101: 'SRRM3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
SRRM3 MUTATED 2 0 0 1
SRRM3 WILD-TYPE 128 78 68 195
'SRRM3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.31 (Fisher's exact test), Q value = 0.64

Table S22049.  Gene #2101: 'SRRM3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
SRRM3 MUTATED 0 0 0 0 2 0 1 0 0
SRRM3 WILD-TYPE 40 62 28 80 67 48 42 28 74
'SFRS12IP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0332 (Fisher's exact test), Q value = 0.19

Table S22050.  Gene #2102: 'SFRS12IP1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
SFRS12IP1 MUTATED 4 0 0 1
SFRS12IP1 WILD-TYPE 174 183 101 19

Figure S5326.  Get High-res Image Gene #2102: 'SFRS12IP1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'SFRS12IP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S22051.  Gene #2102: 'SFRS12IP1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
SFRS12IP1 MUTATED 1 1 1
SFRS12IP1 WILD-TYPE 86 79 99
'SFRS12IP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.797 (Fisher's exact test), Q value = 1

Table S22052.  Gene #2102: 'SFRS12IP1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
SFRS12IP1 MUTATED 0 2 1
SFRS12IP1 WILD-TYPE 89 158 137
'SFRS12IP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.772 (Fisher's exact test), Q value = 1

Table S22053.  Gene #2102: 'SFRS12IP1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
SFRS12IP1 MUTATED 1 1 1
SFRS12IP1 WILD-TYPE 181 132 71
'SFRS12IP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S22054.  Gene #2102: 'SFRS12IP1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
SFRS12IP1 MUTATED 1 1 1 2
SFRS12IP1 WILD-TYPE 111 95 91 184
'SFRS12IP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.211 (Fisher's exact test), Q value = 0.52

Table S22055.  Gene #2102: 'SFRS12IP1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
SFRS12IP1 MUTATED 1 1 2 0 0 1 0
SFRS12IP1 WILD-TYPE 59 49 47 40 63 124 99
'SFRS12IP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.508 (Fisher's exact test), Q value = 0.83

Table S22056.  Gene #2102: 'SFRS12IP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
SFRS12IP1 MUTATED 3 0 0 2
SFRS12IP1 WILD-TYPE 127 78 68 194
'SFRS12IP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.578 (Fisher's exact test), Q value = 0.88

Table S22057.  Gene #2102: 'SFRS12IP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
SFRS12IP1 MUTATED 1 0 0 0 2 0 1 0 1
SFRS12IP1 WILD-TYPE 39 62 28 80 67 48 42 28 73
'SBF1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.121 (Fisher's exact test), Q value = 0.39

Table S22058.  Gene #2103: 'SBF1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
SBF1 MUTATED 2 0 0 1
SBF1 WILD-TYPE 44 58 64 42
'SBF1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.184 (Fisher's exact test), Q value = 0.48

Table S22059.  Gene #2103: 'SBF1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
SBF1 MUTATED 2 0 1
SBF1 WILD-TYPE 49 83 76
'SBF1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00035 (Fisher's exact test), Q value = 0.012

Table S22060.  Gene #2103: 'SBF1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
SBF1 MUTATED 13 1 0 1
SBF1 WILD-TYPE 165 182 101 19

Figure S5327.  Get High-res Image Gene #2103: 'SBF1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'SBF1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0372 (Fisher's exact test), Q value = 0.2

Table S22061.  Gene #2103: 'SBF1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
SBF1 MUTATED 5 0 7
SBF1 WILD-TYPE 82 80 93

Figure S5328.  Get High-res Image Gene #2103: 'SBF1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'SBF1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.874 (Fisher's exact test), Q value = 1

Table S22062.  Gene #2103: 'SBF1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
SBF1 MUTATED 2 6 5
SBF1 WILD-TYPE 87 154 133
'SBF1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S22063.  Gene #2103: 'SBF1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
SBF1 MUTATED 6 5 2
SBF1 WILD-TYPE 176 128 70
'SBF1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.243 (Fisher's exact test), Q value = 0.57

Table S22064.  Gene #2103: 'SBF1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
SBF1 MUTATED 2 5 5 4
SBF1 WILD-TYPE 110 91 87 182
'SBF1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S22065.  Gene #2103: 'SBF1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
SBF1 MUTATED 3 1 9 0 0 0 3
SBF1 WILD-TYPE 57 49 40 40 63 125 96

Figure S5329.  Get High-res Image Gene #2103: 'SBF1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'SBF1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.355 (Fisher's exact test), Q value = 0.68

Table S22066.  Gene #2103: 'SBF1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
SBF1 MUTATED 6 3 0 7
SBF1 WILD-TYPE 124 75 68 189
'SBF1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.367 (Fisher's exact test), Q value = 0.7

Table S22067.  Gene #2103: 'SBF1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
SBF1 MUTATED 1 3 0 3 6 1 0 1 1
SBF1 WILD-TYPE 39 59 28 77 63 47 43 27 73
'SBF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0961 (Fisher's exact test), Q value = 0.34

Table S22068.  Gene #2103: 'SBF1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
SBF1 MUTATED 2 0 0 2
SBF1 WILD-TYPE 31 31 27 17
'SBF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.488 (Fisher's exact test), Q value = 0.81

Table S22069.  Gene #2103: 'SBF1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
SBF1 MUTATED 1 0 2 1
SBF1 WILD-TYPE 53 10 22 21
'MYST3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00719 (Fisher's exact test), Q value = 0.078

Table S22070.  Gene #2104: 'MYST3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
MYST3 MUTATED 4 0 1 5
MYST3 WILD-TYPE 42 58 63 38

Figure S5330.  Get High-res Image Gene #2104: 'MYST3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'MYST3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00446 (Fisher's exact test), Q value = 0.061

Table S22071.  Gene #2104: 'MYST3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
MYST3 MUTATED 7 1 2
MYST3 WILD-TYPE 44 82 75

Figure S5331.  Get High-res Image Gene #2104: 'MYST3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'MYST3 MUTATION STATUS' versus 'CN_CNMF'

P value = 7e-05 (Fisher's exact test), Q value = 0.0041

Table S22072.  Gene #2104: 'MYST3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
MYST3 MUTATED 21 5 0 1
MYST3 WILD-TYPE 157 178 101 19

Figure S5332.  Get High-res Image Gene #2104: 'MYST3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'MYST3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.862 (Fisher's exact test), Q value = 1

Table S22073.  Gene #2104: 'MYST3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
MYST3 MUTATED 6 4 7
MYST3 WILD-TYPE 81 76 93
'MYST3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.506 (Fisher's exact test), Q value = 0.83

Table S22074.  Gene #2104: 'MYST3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
MYST3 MUTATED 3 11 10
MYST3 WILD-TYPE 86 149 128
'MYST3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0826 (Fisher's exact test), Q value = 0.31

Table S22075.  Gene #2104: 'MYST3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
MYST3 MUTATED 11 12 1
MYST3 WILD-TYPE 171 121 71
'MYST3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.175 (Fisher's exact test), Q value = 0.47

Table S22076.  Gene #2104: 'MYST3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
MYST3 MUTATED 5 10 3 9
MYST3 WILD-TYPE 107 86 89 177
'MYST3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00426 (Fisher's exact test), Q value = 0.06

Table S22077.  Gene #2104: 'MYST3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
MYST3 MUTATED 2 1 7 3 4 1 9
MYST3 WILD-TYPE 58 49 42 37 59 124 90

Figure S5333.  Get High-res Image Gene #2104: 'MYST3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'MYST3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.687 (Fisher's exact test), Q value = 0.96

Table S22078.  Gene #2104: 'MYST3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
MYST3 MUTATED 9 4 2 9
MYST3 WILD-TYPE 121 74 66 187
'MYST3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00502 (Fisher's exact test), Q value = 0.064

Table S22079.  Gene #2104: 'MYST3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
MYST3 MUTATED 1 4 1 0 11 2 2 1 2
MYST3 WILD-TYPE 39 58 27 80 58 46 41 27 72

Figure S5334.  Get High-res Image Gene #2104: 'MYST3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'MYST3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.243 (Fisher's exact test), Q value = 0.57

Table S22080.  Gene #2104: 'MYST3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
MYST3 MUTATED 1 3 0 2
MYST3 WILD-TYPE 32 28 27 17
'MYST3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0935 (Fisher's exact test), Q value = 0.33

Table S22081.  Gene #2104: 'MYST3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
MYST3 MUTATED 2 2 2 0
MYST3 WILD-TYPE 52 8 22 22
'ZNF846 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0227 (Fisher's exact test), Q value = 0.15

Table S22082.  Gene #2105: 'ZNF846 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ZNF846 MUTATED 2 0 0 3
ZNF846 WILD-TYPE 44 58 64 40

Figure S5335.  Get High-res Image Gene #2105: 'ZNF846 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'ZNF846 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S22083.  Gene #2105: 'ZNF846 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ZNF846 MUTATED 1 2 2
ZNF846 WILD-TYPE 50 81 75
'ZNF846 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00071 (Fisher's exact test), Q value = 0.02

Table S22084.  Gene #2105: 'ZNF846 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ZNF846 MUTATED 10 0 0 0
ZNF846 WILD-TYPE 168 183 101 20

Figure S5336.  Get High-res Image Gene #2105: 'ZNF846 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ZNF846 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0758 (Fisher's exact test), Q value = 0.3

Table S22085.  Gene #2105: 'ZNF846 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ZNF846 MUTATED 4 0 1
ZNF846 WILD-TYPE 83 80 99
'ZNF846 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S22086.  Gene #2105: 'ZNF846 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ZNF846 MUTATED 1 3 3
ZNF846 WILD-TYPE 88 157 135
'ZNF846 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.119 (Fisher's exact test), Q value = 0.38

Table S22087.  Gene #2105: 'ZNF846 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ZNF846 MUTATED 1 5 1
ZNF846 WILD-TYPE 181 128 71
'ZNF846 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.187 (Fisher's exact test), Q value = 0.49

Table S22088.  Gene #2105: 'ZNF846 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ZNF846 MUTATED 0 3 1 6
ZNF846 WILD-TYPE 112 93 91 180
'ZNF846 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.566 (Fisher's exact test), Q value = 0.87

Table S22089.  Gene #2105: 'ZNF846 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ZNF846 MUTATED 1 2 1 0 1 1 4
ZNF846 WILD-TYPE 59 48 48 40 62 124 95
'ZNF846 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.23 (Fisher's exact test), Q value = 0.55

Table S22090.  Gene #2105: 'ZNF846 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ZNF846 MUTATED 1 2 0 7
ZNF846 WILD-TYPE 129 76 68 189
'ZNF846 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.484 (Fisher's exact test), Q value = 0.81

Table S22091.  Gene #2105: 'ZNF846 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ZNF846 MUTATED 1 1 2 1 3 0 0 0 2
ZNF846 WILD-TYPE 39 61 26 79 66 48 43 28 72
'TEX11 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.203 (Fisher's exact test), Q value = 0.51

Table S22092.  Gene #2106: 'TEX11 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
TEX11 MUTATED 2 0 2 3
TEX11 WILD-TYPE 44 58 62 40
'TEX11 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.303 (Fisher's exact test), Q value = 0.63

Table S22093.  Gene #2106: 'TEX11 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
TEX11 MUTATED 3 1 3
TEX11 WILD-TYPE 48 82 74
'TEX11 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.256 (Fisher's exact test), Q value = 0.58

Table S22094.  Gene #2106: 'TEX11 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
TEX11 MUTATED 12 7 2 0
TEX11 WILD-TYPE 166 176 99 20
'TEX11 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.205 (Fisher's exact test), Q value = 0.51

Table S22095.  Gene #2106: 'TEX11 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
TEX11 MUTATED 2 4 8
TEX11 WILD-TYPE 85 76 92
'TEX11 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.187 (Fisher's exact test), Q value = 0.49

Table S22096.  Gene #2106: 'TEX11 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
TEX11 MUTATED 1 7 8
TEX11 WILD-TYPE 88 153 130
'TEX11 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0543 (Fisher's exact test), Q value = 0.25

Table S22097.  Gene #2106: 'TEX11 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
TEX11 MUTATED 7 9 0
TEX11 WILD-TYPE 175 124 72
'TEX11 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.499 (Fisher's exact test), Q value = 0.83

Table S22098.  Gene #2106: 'TEX11 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
TEX11 MUTATED 6 6 2 7
TEX11 WILD-TYPE 106 90 90 179
'TEX11 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0121 (Fisher's exact test), Q value = 0.11

Table S22099.  Gene #2106: 'TEX11 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
TEX11 MUTATED 5 1 6 2 1 1 5
TEX11 WILD-TYPE 55 49 43 38 62 124 94

Figure S5337.  Get High-res Image Gene #2106: 'TEX11 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'TEX11 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0215 (Fisher's exact test), Q value = 0.15

Table S22100.  Gene #2106: 'TEX11 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
TEX11 MUTATED 12 2 1 5
TEX11 WILD-TYPE 118 76 67 191

Figure S5338.  Get High-res Image Gene #2106: 'TEX11 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'TEX11 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0232 (Fisher's exact test), Q value = 0.15

Table S22101.  Gene #2106: 'TEX11 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
TEX11 MUTATED 3 1 3 4 7 0 0 1 1
TEX11 WILD-TYPE 37 61 25 76 62 48 43 27 73

Figure S5339.  Get High-res Image Gene #2106: 'TEX11 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'TEX11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S22102.  Gene #2106: 'TEX11 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
TEX11 MUTATED 1 1 1 1
TEX11 WILD-TYPE 32 30 26 18
'TEX11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.175 (Fisher's exact test), Q value = 0.47

Table S22103.  Gene #2106: 'TEX11 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
TEX11 MUTATED 1 1 2 0
TEX11 WILD-TYPE 53 9 22 22
'ZP3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.889 (Fisher's exact test), Q value = 1

Table S22104.  Gene #2107: 'ZP3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ZP3 MUTATED 0 1 1 1
ZP3 WILD-TYPE 46 57 63 42
'ZP3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.79 (Fisher's exact test), Q value = 1

Table S22105.  Gene #2107: 'ZP3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ZP3 MUTATED 0 2 1
ZP3 WILD-TYPE 51 81 76
'ZP3 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S22106.  Gene #2107: 'ZP3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ZP3 MUTATED 3 3 1 0
ZP3 WILD-TYPE 175 180 100 20
'ZP3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.325 (Fisher's exact test), Q value = 0.65

Table S22107.  Gene #2107: 'ZP3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ZP3 MUTATED 0 1 3
ZP3 WILD-TYPE 87 79 97
'ZP3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.549 (Fisher's exact test), Q value = 0.87

Table S22108.  Gene #2107: 'ZP3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ZP3 MUTATED 2 4 1
ZP3 WILD-TYPE 87 156 137
'ZP3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.885 (Fisher's exact test), Q value = 1

Table S22109.  Gene #2107: 'ZP3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ZP3 MUTATED 3 3 1
ZP3 WILD-TYPE 179 130 71
'ZP3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.872 (Fisher's exact test), Q value = 1

Table S22110.  Gene #2107: 'ZP3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ZP3 MUTATED 1 1 2 3
ZP3 WILD-TYPE 111 95 90 183
'ZP3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.47 (Fisher's exact test), Q value = 0.8

Table S22111.  Gene #2107: 'ZP3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ZP3 MUTATED 0 0 2 0 2 2 1
ZP3 WILD-TYPE 60 50 47 40 61 123 98
'ZP3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.903 (Fisher's exact test), Q value = 1

Table S22112.  Gene #2107: 'ZP3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ZP3 MUTATED 2 1 0 4
ZP3 WILD-TYPE 128 77 68 192
'ZP3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.329 (Fisher's exact test), Q value = 0.66

Table S22113.  Gene #2107: 'ZP3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ZP3 MUTATED 1 1 2 0 1 1 0 0 1
ZP3 WILD-TYPE 39 61 26 80 68 47 43 28 73
'GLI4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.384 (Fisher's exact test), Q value = 0.71

Table S22114.  Gene #2108: 'GLI4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
GLI4 MUTATED 4 1 0 0
GLI4 WILD-TYPE 174 182 101 20
'GLI4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.394 (Fisher's exact test), Q value = 0.72

Table S22115.  Gene #2108: 'GLI4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
GLI4 MUTATED 1 0 3
GLI4 WILD-TYPE 86 80 97
'GLI4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S22116.  Gene #2108: 'GLI4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
GLI4 MUTATED 1 2 2
GLI4 WILD-TYPE 88 158 136
'GLI4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.717 (Fisher's exact test), Q value = 0.99

Table S22117.  Gene #2108: 'GLI4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
GLI4 MUTATED 3 2 0
GLI4 WILD-TYPE 179 131 72
'GLI4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.19 (Fisher's exact test), Q value = 0.49

Table S22118.  Gene #2108: 'GLI4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
GLI4 MUTATED 0 2 2 1
GLI4 WILD-TYPE 112 94 90 185
'GLI4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.282 (Fisher's exact test), Q value = 0.61

Table S22119.  Gene #2108: 'GLI4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
GLI4 MUTATED 1 0 2 0 1 1 0
GLI4 WILD-TYPE 59 50 47 40 62 124 99
'GLI4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.187 (Fisher's exact test), Q value = 0.49

Table S22120.  Gene #2108: 'GLI4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
GLI4 MUTATED 2 1 1 0
GLI4 WILD-TYPE 128 77 67 196
'GLI4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.651 (Fisher's exact test), Q value = 0.94

Table S22121.  Gene #2108: 'GLI4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
GLI4 MUTATED 1 1 0 1 0 0 1 0 0
GLI4 WILD-TYPE 39 61 28 79 69 48 42 28 74
'SORBS1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.071 (Fisher's exact test), Q value = 0.29

Table S22122.  Gene #2109: 'SORBS1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
SORBS1 MUTATED 3 0 1 3
SORBS1 WILD-TYPE 43 58 63 40
'SORBS1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.125 (Fisher's exact test), Q value = 0.39

Table S22123.  Gene #2109: 'SORBS1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
SORBS1 MUTATED 4 2 1
SORBS1 WILD-TYPE 47 81 76
'SORBS1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00297 (Fisher's exact test), Q value = 0.049

Table S22124.  Gene #2109: 'SORBS1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
SORBS1 MUTATED 10 1 0 1
SORBS1 WILD-TYPE 168 182 101 19

Figure S5340.  Get High-res Image Gene #2109: 'SORBS1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'SORBS1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.629 (Fisher's exact test), Q value = 0.92

Table S22125.  Gene #2109: 'SORBS1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
SORBS1 MUTATED 1 1 3
SORBS1 WILD-TYPE 86 79 97
'SORBS1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.246 (Fisher's exact test), Q value = 0.57

Table S22126.  Gene #2109: 'SORBS1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
SORBS1 MUTATED 1 7 2
SORBS1 WILD-TYPE 88 153 136
'SORBS1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.132 (Fisher's exact test), Q value = 0.41

Table S22127.  Gene #2109: 'SORBS1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
SORBS1 MUTATED 2 6 2
SORBS1 WILD-TYPE 180 127 70
'SORBS1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.106 (Fisher's exact test), Q value = 0.36

Table S22128.  Gene #2109: 'SORBS1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
SORBS1 MUTATED 1 4 0 7
SORBS1 WILD-TYPE 111 92 92 179
'SORBS1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.11 (Fisher's exact test), Q value = 0.37

Table S22129.  Gene #2109: 'SORBS1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
SORBS1 MUTATED 2 1 2 0 0 1 6
SORBS1 WILD-TYPE 58 49 47 40 63 124 93
'SORBS1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0799 (Fisher's exact test), Q value = 0.3

Table S22130.  Gene #2109: 'SORBS1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
SORBS1 MUTATED 3 0 0 9
SORBS1 WILD-TYPE 127 78 68 187
'SORBS1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00938 (Fisher's exact test), Q value = 0.091

Table S22131.  Gene #2109: 'SORBS1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
SORBS1 MUTATED 1 0 1 0 7 1 0 0 2
SORBS1 WILD-TYPE 39 62 27 80 62 47 43 28 72

Figure S5341.  Get High-res Image Gene #2109: 'SORBS1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'ITGA2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0511 (Fisher's exact test), Q value = 0.24

Table S22132.  Gene #2110: 'ITGA2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ITGA2 MUTATED 0 0 1 3
ITGA2 WILD-TYPE 46 58 63 40
'ITGA2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S22133.  Gene #2110: 'ITGA2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ITGA2 MUTATED 1 2 1
ITGA2 WILD-TYPE 50 81 76
'ITGA2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.127 (Fisher's exact test), Q value = 0.4

Table S22134.  Gene #2110: 'ITGA2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ITGA2 MUTATED 7 1 1 0
ITGA2 WILD-TYPE 171 182 100 20
'ITGA2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.386 (Fisher's exact test), Q value = 0.71

Table S22135.  Gene #2110: 'ITGA2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ITGA2 MUTATED 2 0 3
ITGA2 WILD-TYPE 85 80 97
'ITGA2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.199 (Fisher's exact test), Q value = 0.5

Table S22136.  Gene #2110: 'ITGA2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ITGA2 MUTATED 1 6 1
ITGA2 WILD-TYPE 88 154 137
'ITGA2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.419 (Fisher's exact test), Q value = 0.75

Table S22137.  Gene #2110: 'ITGA2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ITGA2 MUTATED 2 4 2
ITGA2 WILD-TYPE 180 129 70
'ITGA2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.221 (Fisher's exact test), Q value = 0.54

Table S22138.  Gene #2110: 'ITGA2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ITGA2 MUTATED 0 3 1 5
ITGA2 WILD-TYPE 112 93 91 181
'ITGA2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.285 (Fisher's exact test), Q value = 0.61

Table S22139.  Gene #2110: 'ITGA2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ITGA2 MUTATED 1 0 3 0 1 1 3
ITGA2 WILD-TYPE 59 50 46 40 62 124 96
'ITGA2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.735 (Fisher's exact test), Q value = 1

Table S22140.  Gene #2110: 'ITGA2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ITGA2 MUTATED 3 1 0 5
ITGA2 WILD-TYPE 127 77 68 191
'ITGA2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.173 (Fisher's exact test), Q value = 0.47

Table S22141.  Gene #2110: 'ITGA2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ITGA2 MUTATED 2 1 2 0 2 0 0 0 2
ITGA2 WILD-TYPE 38 61 26 80 67 48 43 28 72
'PRSS27 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.536 (Fisher's exact test), Q value = 0.86

Table S22142.  Gene #2111: 'PRSS27 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
PRSS27 MUTATED 3 1 0 0
PRSS27 WILD-TYPE 175 182 101 20
'PRSS27 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.64 (Fisher's exact test), Q value = 0.93

Table S22143.  Gene #2111: 'PRSS27 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
PRSS27 MUTATED 0 1 2
PRSS27 WILD-TYPE 87 79 98
'PRSS27 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S22144.  Gene #2111: 'PRSS27 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
PRSS27 MUTATED 1 1 1
PRSS27 WILD-TYPE 88 159 137
'PRSS27 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S22145.  Gene #2111: 'PRSS27 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
PRSS27 MUTATED 2 1 0
PRSS27 WILD-TYPE 180 132 72
'PRSS27 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.338 (Fisher's exact test), Q value = 0.67

Table S22146.  Gene #2111: 'PRSS27 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
PRSS27 MUTATED 0 2 0 2
PRSS27 WILD-TYPE 112 94 92 184
'PRSS27 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.752 (Fisher's exact test), Q value = 1

Table S22147.  Gene #2111: 'PRSS27 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
PRSS27 MUTATED 0 1 1 0 0 1 1
PRSS27 WILD-TYPE 60 49 48 40 63 124 98
'PRSS27 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S22148.  Gene #2111: 'PRSS27 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
PRSS27 MUTATED 1 1 0 2
PRSS27 WILD-TYPE 129 77 68 194
'PRSS27 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.308 (Fisher's exact test), Q value = 0.64

Table S22149.  Gene #2111: 'PRSS27 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
PRSS27 MUTATED 0 0 1 1 1 0 0 1 0
PRSS27 WILD-TYPE 40 62 27 79 68 48 43 27 74
'GLT25D1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0227 (Fisher's exact test), Q value = 0.15

Table S22150.  Gene #2112: 'GLT25D1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
GLT25D1 MUTATED 8 1 0 0
GLT25D1 WILD-TYPE 170 182 101 20

Figure S5342.  Get High-res Image Gene #2112: 'GLT25D1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'GLT25D1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.288 (Fisher's exact test), Q value = 0.62

Table S22151.  Gene #2112: 'GLT25D1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
GLT25D1 MUTATED 3 0 3
GLT25D1 WILD-TYPE 84 80 97
'GLT25D1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0825 (Fisher's exact test), Q value = 0.31

Table S22152.  Gene #2112: 'GLT25D1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
GLT25D1 MUTATED 1 1 6
GLT25D1 WILD-TYPE 88 159 132
'GLT25D1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.465 (Fisher's exact test), Q value = 0.79

Table S22153.  Gene #2112: 'GLT25D1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
GLT25D1 MUTATED 5 1 2
GLT25D1 WILD-TYPE 177 132 70
'GLT25D1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.234 (Fisher's exact test), Q value = 0.55

Table S22154.  Gene #2112: 'GLT25D1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
GLT25D1 MUTATED 1 2 4 2
GLT25D1 WILD-TYPE 111 94 88 184
'GLT25D1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0266 (Fisher's exact test), Q value = 0.17

Table S22155.  Gene #2112: 'GLT25D1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
GLT25D1 MUTATED 0 2 4 0 0 1 2
GLT25D1 WILD-TYPE 60 48 45 40 63 124 97

Figure S5343.  Get High-res Image Gene #2112: 'GLT25D1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'GLT25D1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.472 (Fisher's exact test), Q value = 0.8

Table S22156.  Gene #2112: 'GLT25D1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
GLT25D1 MUTATED 4 2 0 3
GLT25D1 WILD-TYPE 126 76 68 193
'GLT25D1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.096 (Fisher's exact test), Q value = 0.34

Table S22157.  Gene #2112: 'GLT25D1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
GLT25D1 MUTATED 0 3 1 0 4 0 0 0 1
GLT25D1 WILD-TYPE 40 59 27 80 65 48 43 28 73
'FAM167B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.867 (Fisher's exact test), Q value = 1

Table S22158.  Gene #2113: 'FAM167B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
FAM167B MUTATED 2 1 1 0
FAM167B WILD-TYPE 176 182 100 20
'FAM167B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.64 (Fisher's exact test), Q value = 0.93

Table S22159.  Gene #2113: 'FAM167B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
FAM167B MUTATED 0 1 2
FAM167B WILD-TYPE 87 79 98
'FAM167B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.419 (Fisher's exact test), Q value = 0.75

Table S22160.  Gene #2113: 'FAM167B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
FAM167B MUTATED 1 2 0 1
FAM167B WILD-TYPE 111 94 92 185
'FAM167B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.151 (Fisher's exact test), Q value = 0.43

Table S22161.  Gene #2113: 'FAM167B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
FAM167B MUTATED 0 2 1 0 0 1 0
FAM167B WILD-TYPE 60 48 48 40 63 124 99
'FAM167B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.903 (Fisher's exact test), Q value = 1

Table S22162.  Gene #2113: 'FAM167B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
FAM167B MUTATED 1 0 1 2
FAM167B WILD-TYPE 129 78 67 194
'FAM167B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.705 (Fisher's exact test), Q value = 0.98

Table S22163.  Gene #2113: 'FAM167B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
FAM167B MUTATED 0 0 0 2 1 0 1 0 0
FAM167B WILD-TYPE 40 62 28 78 68 48 42 28 74
'OR5AN1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.253 (Fisher's exact test), Q value = 0.58

Table S22164.  Gene #2114: 'OR5AN1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
OR5AN1 MUTATED 3 2 0 1
OR5AN1 WILD-TYPE 175 181 101 19
'OR5AN1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.328 (Fisher's exact test), Q value = 0.66

Table S22165.  Gene #2114: 'OR5AN1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
OR5AN1 MUTATED 3 0 2
OR5AN1 WILD-TYPE 84 80 98
'OR5AN1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.611 (Fisher's exact test), Q value = 0.91

Table S22166.  Gene #2114: 'OR5AN1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
OR5AN1 MUTATED 0 1 2
OR5AN1 WILD-TYPE 89 159 136
'OR5AN1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.588 (Fisher's exact test), Q value = 0.89

Table S22167.  Gene #2114: 'OR5AN1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
OR5AN1 MUTATED 1 2 0
OR5AN1 WILD-TYPE 181 131 72
'OR5AN1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0611 (Fisher's exact test), Q value = 0.27

Table S22168.  Gene #2114: 'OR5AN1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
OR5AN1 MUTATED 2 3 1 0
OR5AN1 WILD-TYPE 110 93 91 186
'OR5AN1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.061 (Fisher's exact test), Q value = 0.27

Table S22169.  Gene #2114: 'OR5AN1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
OR5AN1 MUTATED 0 2 2 1 0 1 0
OR5AN1 WILD-TYPE 60 48 47 39 63 124 99
'OR5AN1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.449 (Fisher's exact test), Q value = 0.78

Table S22170.  Gene #2114: 'OR5AN1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
OR5AN1 MUTATED 3 1 1 1
OR5AN1 WILD-TYPE 127 77 67 195
'OR5AN1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.939 (Fisher's exact test), Q value = 1

Table S22171.  Gene #2114: 'OR5AN1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
OR5AN1 MUTATED 0 2 0 2 1 0 0 0 1
OR5AN1 WILD-TYPE 40 60 28 78 68 48 43 28 73
'OR5AN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.166 (Fisher's exact test), Q value = 0.46

Table S22172.  Gene #2114: 'OR5AN1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
OR5AN1 MUTATED 0 0 2 1
OR5AN1 WILD-TYPE 33 31 25 18
'OR5AN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.694 (Fisher's exact test), Q value = 0.97

Table S22173.  Gene #2114: 'OR5AN1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
OR5AN1 MUTATED 1 0 1 1
OR5AN1 WILD-TYPE 53 10 23 21
'SETD7 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0627 (Fisher's exact test), Q value = 0.27

Table S22174.  Gene #2115: 'SETD7 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
SETD7 MUTATED 1 0 0 2
SETD7 WILD-TYPE 45 58 64 41
'SETD7 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.348 (Fisher's exact test), Q value = 0.68

Table S22175.  Gene #2115: 'SETD7 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
SETD7 MUTATED 1 0 2
SETD7 WILD-TYPE 50 83 75
'SETD7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0121 (Fisher's exact test), Q value = 0.11

Table S22176.  Gene #2115: 'SETD7 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
SETD7 MUTATED 8 0 1 0
SETD7 WILD-TYPE 170 183 100 20

Figure S5344.  Get High-res Image Gene #2115: 'SETD7 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'SETD7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.14 (Fisher's exact test), Q value = 0.42

Table S22177.  Gene #2115: 'SETD7 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
SETD7 MUTATED 4 0 2
SETD7 WILD-TYPE 83 80 98
'SETD7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.373 (Fisher's exact test), Q value = 0.7

Table S22178.  Gene #2115: 'SETD7 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
SETD7 MUTATED 0 2 3
SETD7 WILD-TYPE 89 158 135
'SETD7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.599 (Fisher's exact test), Q value = 0.9

Table S22179.  Gene #2115: 'SETD7 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
SETD7 MUTATED 2 3 0
SETD7 WILD-TYPE 180 130 72
'SETD7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.113 (Fisher's exact test), Q value = 0.37

Table S22180.  Gene #2115: 'SETD7 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
SETD7 MUTATED 0 3 3 2
SETD7 WILD-TYPE 112 93 89 184
'SETD7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00137 (Fisher's exact test), Q value = 0.03

Table S22181.  Gene #2115: 'SETD7 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
SETD7 MUTATED 1 1 5 0 0 0 1
SETD7 WILD-TYPE 59 49 44 40 63 125 98

Figure S5345.  Get High-res Image Gene #2115: 'SETD7 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'SETD7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.693 (Fisher's exact test), Q value = 0.97

Table S22182.  Gene #2115: 'SETD7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
SETD7 MUTATED 2 2 0 5
SETD7 WILD-TYPE 128 76 68 191
'SETD7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.444 (Fisher's exact test), Q value = 0.77

Table S22183.  Gene #2115: 'SETD7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
SETD7 MUTATED 0 1 0 1 4 0 0 1 2
SETD7 WILD-TYPE 40 61 28 79 65 48 43 27 72
'ARHGAP10 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0763 (Fisher's exact test), Q value = 0.3

Table S22184.  Gene #2116: 'ARHGAP10 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ARHGAP10 MUTATED 6 2 0 1
ARHGAP10 WILD-TYPE 172 181 101 19
'ARHGAP10 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.503 (Fisher's exact test), Q value = 0.83

Table S22185.  Gene #2116: 'ARHGAP10 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ARHGAP10 MUTATED 1 2 4
ARHGAP10 WILD-TYPE 86 78 96
'ARHGAP10 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0696 (Fisher's exact test), Q value = 0.28

Table S22186.  Gene #2116: 'ARHGAP10 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ARHGAP10 MUTATED 0 2 6
ARHGAP10 WILD-TYPE 89 158 132
'ARHGAP10 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.288 (Fisher's exact test), Q value = 0.62

Table S22187.  Gene #2116: 'ARHGAP10 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ARHGAP10 MUTATED 6 2 0
ARHGAP10 WILD-TYPE 176 131 72
'ARHGAP10 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.604 (Fisher's exact test), Q value = 0.91

Table S22188.  Gene #2116: 'ARHGAP10 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ARHGAP10 MUTATED 2 3 2 2
ARHGAP10 WILD-TYPE 110 93 90 184
'ARHGAP10 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.225 (Fisher's exact test), Q value = 0.54

Table S22189.  Gene #2116: 'ARHGAP10 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ARHGAP10 MUTATED 1 0 3 1 2 1 1
ARHGAP10 WILD-TYPE 59 50 46 39 61 124 98
'ARHGAP10 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S22190.  Gene #2116: 'ARHGAP10 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ARHGAP10 MUTATED 3 1 1 4
ARHGAP10 WILD-TYPE 127 77 67 192
'ARHGAP10 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.422 (Fisher's exact test), Q value = 0.75

Table S22191.  Gene #2116: 'ARHGAP10 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ARHGAP10 MUTATED 0 1 1 3 2 0 2 0 0
ARHGAP10 WILD-TYPE 40 61 27 77 67 48 41 28 74
'ARHGAP10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.192 (Fisher's exact test), Q value = 0.49

Table S22192.  Gene #2116: 'ARHGAP10 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
ARHGAP10 MUTATED 0 1 1 2
ARHGAP10 WILD-TYPE 33 30 26 17
'ARHGAP10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.603 (Fisher's exact test), Q value = 0.91

Table S22193.  Gene #2116: 'ARHGAP10 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
ARHGAP10 MUTATED 2 1 1 0
ARHGAP10 WILD-TYPE 52 9 23 22
'C9ORF102 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0084 (Fisher's exact test), Q value = 0.085

Table S22194.  Gene #2117: 'C9ORF102 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
C9ORF102 MUTATED 3 0 0 3
C9ORF102 WILD-TYPE 43 58 64 40

Figure S5346.  Get High-res Image Gene #2117: 'C9ORF102 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'C9ORF102 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.879 (Fisher's exact test), Q value = 1

Table S22195.  Gene #2117: 'C9ORF102 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
C9ORF102 MUTATED 2 2 2
C9ORF102 WILD-TYPE 49 81 75
'C9ORF102 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00154 (Fisher's exact test), Q value = 0.032

Table S22196.  Gene #2117: 'C9ORF102 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
C9ORF102 MUTATED 9 0 0 0
C9ORF102 WILD-TYPE 169 183 101 20

Figure S5347.  Get High-res Image Gene #2117: 'C9ORF102 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'C9ORF102 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.389 (Fisher's exact test), Q value = 0.72

Table S22197.  Gene #2117: 'C9ORF102 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
C9ORF102 MUTATED 1 0 3
C9ORF102 WILD-TYPE 86 80 97
'C9ORF102 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.874 (Fisher's exact test), Q value = 1

Table S22198.  Gene #2117: 'C9ORF102 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
C9ORF102 MUTATED 1 2 3
C9ORF102 WILD-TYPE 88 158 135
'C9ORF102 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.579 (Fisher's exact test), Q value = 0.88

Table S22199.  Gene #2117: 'C9ORF102 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
C9ORF102 MUTATED 3 3 0
C9ORF102 WILD-TYPE 179 130 72
'C9ORF102 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0986 (Fisher's exact test), Q value = 0.34

Table S22200.  Gene #2117: 'C9ORF102 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
C9ORF102 MUTATED 0 1 4 5
C9ORF102 WILD-TYPE 112 95 88 181
'C9ORF102 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.552 (Fisher's exact test), Q value = 0.87

Table S22201.  Gene #2117: 'C9ORF102 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
C9ORF102 MUTATED 1 1 2 0 1 1 4
C9ORF102 WILD-TYPE 59 49 47 40 62 124 95
'C9ORF102 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.229 (Fisher's exact test), Q value = 0.55

Table S22202.  Gene #2117: 'C9ORF102 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
C9ORF102 MUTATED 1 2 0 7
C9ORF102 WILD-TYPE 129 76 68 189
'C9ORF102 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.159 (Fisher's exact test), Q value = 0.45

Table S22203.  Gene #2117: 'C9ORF102 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
C9ORF102 MUTATED 0 3 2 2 2 0 0 1 0
C9ORF102 WILD-TYPE 40 59 26 78 67 48 43 27 74
'LRMP MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.31 (Fisher's exact test), Q value = 0.64

Table S22204.  Gene #2118: 'LRMP MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
LRMP MUTATED 1 1 0 2
LRMP WILD-TYPE 45 57 64 41
'LRMP MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.556 (Fisher's exact test), Q value = 0.87

Table S22205.  Gene #2118: 'LRMP MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
LRMP MUTATED 2 1 1
LRMP WILD-TYPE 49 82 76
'LRMP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.548 (Fisher's exact test), Q value = 0.87

Table S22206.  Gene #2118: 'LRMP MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
LRMP MUTATED 4 3 0 0
LRMP WILD-TYPE 174 180 101 20
'LRMP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.262 (Fisher's exact test), Q value = 0.59

Table S22207.  Gene #2118: 'LRMP MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
LRMP MUTATED 2 2 0
LRMP WILD-TYPE 85 78 100
'LRMP MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.51 (Fisher's exact test), Q value = 0.83

Table S22208.  Gene #2118: 'LRMP MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
LRMP MUTATED 0 3 3
LRMP WILD-TYPE 89 157 135
'LRMP MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.29 (Fisher's exact test), Q value = 0.62

Table S22209.  Gene #2118: 'LRMP MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
LRMP MUTATED 2 4 0
LRMP WILD-TYPE 180 129 72
'LRMP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.731 (Fisher's exact test), Q value = 1

Table S22210.  Gene #2118: 'LRMP MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
LRMP MUTATED 3 1 1 2
LRMP WILD-TYPE 109 95 91 184
'LRMP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.829 (Fisher's exact test), Q value = 1

Table S22211.  Gene #2118: 'LRMP MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
LRMP MUTATED 1 1 0 0 1 1 3
LRMP WILD-TYPE 59 49 49 40 62 124 96
'LRMP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0706 (Fisher's exact test), Q value = 0.29

Table S22212.  Gene #2118: 'LRMP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
LRMP MUTATED 0 1 3 2
LRMP WILD-TYPE 130 77 65 194
'LRMP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.774 (Fisher's exact test), Q value = 1

Table S22213.  Gene #2118: 'LRMP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
LRMP MUTATED 0 1 0 0 1 1 1 1 1
LRMP WILD-TYPE 40 61 28 80 68 47 42 27 73
'LSM14A MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.258 (Fisher's exact test), Q value = 0.58

Table S22214.  Gene #2119: 'LSM14A MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
LSM14A MUTATED 2 0 1 2
LSM14A WILD-TYPE 44 58 63 41
'LSM14A MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.637 (Fisher's exact test), Q value = 0.93

Table S22215.  Gene #2119: 'LSM14A MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
LSM14A MUTATED 2 1 2
LSM14A WILD-TYPE 49 82 75
'LSM14A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00513 (Fisher's exact test), Q value = 0.065

Table S22216.  Gene #2119: 'LSM14A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
LSM14A MUTATED 10 1 0 0
LSM14A WILD-TYPE 168 182 101 20

Figure S5348.  Get High-res Image Gene #2119: 'LSM14A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'LSM14A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.329 (Fisher's exact test), Q value = 0.66

Table S22217.  Gene #2119: 'LSM14A MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
LSM14A MUTATED 3 0 2
LSM14A WILD-TYPE 84 80 98
'LSM14A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.446 (Fisher's exact test), Q value = 0.77

Table S22218.  Gene #2119: 'LSM14A MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
LSM14A MUTATED 2 1 3
LSM14A WILD-TYPE 87 159 135
'LSM14A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.762 (Fisher's exact test), Q value = 1

Table S22219.  Gene #2119: 'LSM14A MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
LSM14A MUTATED 4 1 1
LSM14A WILD-TYPE 178 132 71
'LSM14A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.249 (Fisher's exact test), Q value = 0.58

Table S22220.  Gene #2119: 'LSM14A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
LSM14A MUTATED 0 3 2 6
LSM14A WILD-TYPE 112 93 90 180
'LSM14A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.338 (Fisher's exact test), Q value = 0.67

Table S22221.  Gene #2119: 'LSM14A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
LSM14A MUTATED 0 1 3 0 1 2 4
LSM14A WILD-TYPE 60 49 46 40 62 123 95
'LSM14A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.651 (Fisher's exact test), Q value = 0.94

Table S22222.  Gene #2119: 'LSM14A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
LSM14A MUTATED 3 2 0 6
LSM14A WILD-TYPE 127 76 68 190
'LSM14A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0731 (Fisher's exact test), Q value = 0.29

Table S22223.  Gene #2119: 'LSM14A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
LSM14A MUTATED 0 3 1 2 5 0 0 0 0
LSM14A WILD-TYPE 40 59 27 78 64 48 43 28 74
'SMPDL3B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.748 (Fisher's exact test), Q value = 1

Table S22224.  Gene #2120: 'SMPDL3B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
SMPDL3B MUTATED 5 3 1 0
SMPDL3B WILD-TYPE 173 180 100 20
'SMPDL3B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0249 (Fisher's exact test), Q value = 0.16

Table S22225.  Gene #2120: 'SMPDL3B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
SMPDL3B MUTATED 1 0 6
SMPDL3B WILD-TYPE 86 80 94

Figure S5349.  Get High-res Image Gene #2120: 'SMPDL3B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'SMPDL3B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S22226.  Gene #2120: 'SMPDL3B MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
SMPDL3B MUTATED 2 3 3
SMPDL3B WILD-TYPE 87 157 135
'SMPDL3B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.724 (Fisher's exact test), Q value = 0.99

Table S22227.  Gene #2120: 'SMPDL3B MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
SMPDL3B MUTATED 3 3 2
SMPDL3B WILD-TYPE 179 130 70
'SMPDL3B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0591 (Fisher's exact test), Q value = 0.27

Table S22228.  Gene #2120: 'SMPDL3B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
SMPDL3B MUTATED 0 4 3 2
SMPDL3B WILD-TYPE 112 92 89 184
'SMPDL3B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.032 (Fisher's exact test), Q value = 0.18

Table S22229.  Gene #2120: 'SMPDL3B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
SMPDL3B MUTATED 0 3 3 1 0 1 1
SMPDL3B WILD-TYPE 60 47 46 39 63 124 98

Figure S5350.  Get High-res Image Gene #2120: 'SMPDL3B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'SMPDL3B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0112 (Fisher's exact test), Q value = 0.1

Table S22230.  Gene #2120: 'SMPDL3B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
SMPDL3B MUTATED 7 0 1 1
SMPDL3B WILD-TYPE 123 78 67 195

Figure S5351.  Get High-res Image Gene #2120: 'SMPDL3B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'SMPDL3B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.7 (Fisher's exact test), Q value = 0.97

Table S22231.  Gene #2120: 'SMPDL3B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
SMPDL3B MUTATED 2 1 0 1 3 0 1 0 1
SMPDL3B WILD-TYPE 38 61 28 79 66 48 42 28 73
'SMPDL3B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.024 (Fisher's exact test), Q value = 0.16

Table S22232.  Gene #2120: 'SMPDL3B MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
SMPDL3B MUTATED 1 0 0 3
SMPDL3B WILD-TYPE 32 31 27 16

Figure S5352.  Get High-res Image Gene #2120: 'SMPDL3B MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'SMPDL3B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.868 (Fisher's exact test), Q value = 1

Table S22233.  Gene #2120: 'SMPDL3B MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
SMPDL3B MUTATED 3 0 1 0
SMPDL3B WILD-TYPE 51 10 23 22
'KIF26A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0112 (Fisher's exact test), Q value = 0.1

Table S22234.  Gene #2121: 'KIF26A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
KIF26A MUTATED 9 1 0 0
KIF26A WILD-TYPE 169 182 101 20

Figure S5353.  Get High-res Image Gene #2121: 'KIF26A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'KIF26A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.013 (Fisher's exact test), Q value = 0.11

Table S22235.  Gene #2121: 'KIF26A MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
KIF26A MUTATED 2 0 8
KIF26A WILD-TYPE 85 80 92

Figure S5354.  Get High-res Image Gene #2121: 'KIF26A MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'KIF26A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0524 (Fisher's exact test), Q value = 0.25

Table S22236.  Gene #2121: 'KIF26A MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
KIF26A MUTATED 0 3 7
KIF26A WILD-TYPE 89 157 131
'KIF26A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.361 (Fisher's exact test), Q value = 0.69

Table S22237.  Gene #2121: 'KIF26A MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
KIF26A MUTATED 6 4 0
KIF26A WILD-TYPE 176 129 72
'KIF26A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00022 (Fisher's exact test), Q value = 0.0088

Table S22238.  Gene #2121: 'KIF26A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
KIF26A MUTATED 0 5 5 0
KIF26A WILD-TYPE 112 91 87 186

Figure S5355.  Get High-res Image Gene #2121: 'KIF26A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'KIF26A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S22239.  Gene #2121: 'KIF26A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
KIF26A MUTATED 0 1 8 0 0 0 1
KIF26A WILD-TYPE 60 49 41 40 63 125 98

Figure S5356.  Get High-res Image Gene #2121: 'KIF26A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'KIF26A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.638 (Fisher's exact test), Q value = 0.93

Table S22240.  Gene #2121: 'KIF26A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
KIF26A MUTATED 4 2 0 4
KIF26A WILD-TYPE 126 76 68 192
'KIF26A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0733 (Fisher's exact test), Q value = 0.29

Table S22241.  Gene #2121: 'KIF26A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
KIF26A MUTATED 0 3 0 1 5 0 1 0 0
KIF26A WILD-TYPE 40 59 28 79 64 48 42 28 74
'KDELR2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.814 (Fisher's exact test), Q value = 1

Table S22242.  Gene #2122: 'KDELR2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
KDELR2 MUTATED 2 2 2 0
KDELR2 WILD-TYPE 176 181 99 20
'KDELR2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.688 (Fisher's exact test), Q value = 0.97

Table S22243.  Gene #2122: 'KDELR2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
KDELR2 MUTATED 1 2 1
KDELR2 WILD-TYPE 86 78 99
'KDELR2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.511 (Fisher's exact test), Q value = 0.83

Table S22244.  Gene #2122: 'KDELR2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
KDELR2 MUTATED 0 3 3
KDELR2 WILD-TYPE 89 157 135
'KDELR2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S22245.  Gene #2122: 'KDELR2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
KDELR2 MUTATED 3 2 1
KDELR2 WILD-TYPE 179 131 71
'KDELR2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.799 (Fisher's exact test), Q value = 1

Table S22246.  Gene #2122: 'KDELR2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
KDELR2 MUTATED 2 1 0 3
KDELR2 WILD-TYPE 110 95 92 183
'KDELR2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.238 (Fisher's exact test), Q value = 0.56

Table S22247.  Gene #2122: 'KDELR2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
KDELR2 MUTATED 3 1 0 0 0 1 1
KDELR2 WILD-TYPE 57 49 49 40 63 124 98
'KDELR2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.832 (Fisher's exact test), Q value = 1

Table S22248.  Gene #2122: 'KDELR2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
KDELR2 MUTATED 2 0 1 3
KDELR2 WILD-TYPE 128 78 67 193
'KDELR2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.454 (Fisher's exact test), Q value = 0.78

Table S22249.  Gene #2122: 'KDELR2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
KDELR2 MUTATED 1 0 1 1 2 0 1 0 0
KDELR2 WILD-TYPE 39 62 27 79 67 48 42 28 74
'SIAH2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.075 (Fisher's exact test), Q value = 0.29

Table S22250.  Gene #2123: 'SIAH2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
SIAH2 MUTATED 2 0 0 2
SIAH2 WILD-TYPE 44 58 64 41
'SIAH2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0615 (Fisher's exact test), Q value = 0.27

Table S22251.  Gene #2123: 'SIAH2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
SIAH2 MUTATED 3 1 0
SIAH2 WILD-TYPE 48 82 77
'SIAH2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.127 (Fisher's exact test), Q value = 0.4

Table S22252.  Gene #2123: 'SIAH2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
SIAH2 MUTATED 7 1 1 0
SIAH2 WILD-TYPE 171 182 100 20
'SIAH2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.327 (Fisher's exact test), Q value = 0.66

Table S22253.  Gene #2123: 'SIAH2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
SIAH2 MUTATED 3 0 2
SIAH2 WILD-TYPE 84 80 98
'SIAH2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.177 (Fisher's exact test), Q value = 0.48

Table S22254.  Gene #2123: 'SIAH2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
SIAH2 MUTATED 0 3 5
SIAH2 WILD-TYPE 89 157 133
'SIAH2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S22255.  Gene #2123: 'SIAH2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
SIAH2 MUTATED 4 3 1
SIAH2 WILD-TYPE 178 130 71
'SIAH2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.801 (Fisher's exact test), Q value = 1

Table S22256.  Gene #2123: 'SIAH2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
SIAH2 MUTATED 2 1 1 5
SIAH2 WILD-TYPE 110 95 91 181
'SIAH2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0518 (Fisher's exact test), Q value = 0.25

Table S22257.  Gene #2123: 'SIAH2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
SIAH2 MUTATED 0 1 2 0 1 0 5
SIAH2 WILD-TYPE 60 49 47 40 62 125 94
'SIAH2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.613 (Fisher's exact test), Q value = 0.91

Table S22258.  Gene #2123: 'SIAH2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
SIAH2 MUTATED 2 0 1 5
SIAH2 WILD-TYPE 128 78 67 191
'SIAH2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.445 (Fisher's exact test), Q value = 0.77

Table S22259.  Gene #2123: 'SIAH2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
SIAH2 MUTATED 0 0 1 1 3 0 1 1 1
SIAH2 WILD-TYPE 40 62 27 79 66 48 42 27 73
'SIAH2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.167 (Fisher's exact test), Q value = 0.46

Table S22260.  Gene #2123: 'SIAH2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
SIAH2 MUTATED 0 0 2 1
SIAH2 WILD-TYPE 33 31 25 18
'SIAH2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.141 (Fisher's exact test), Q value = 0.42

Table S22261.  Gene #2123: 'SIAH2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
SIAH2 MUTATED 0 0 2 1
SIAH2 WILD-TYPE 54 10 22 21
'C6ORF203 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0432 (Fisher's exact test), Q value = 0.22

Table S22262.  Gene #2124: 'C6ORF203 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
C6ORF203 MUTATED 5 0 0 0
C6ORF203 WILD-TYPE 173 183 101 20

Figure S5357.  Get High-res Image Gene #2124: 'C6ORF203 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'C6ORF203 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.779 (Fisher's exact test), Q value = 1

Table S22263.  Gene #2124: 'C6ORF203 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
C6ORF203 MUTATED 1 0 2
C6ORF203 WILD-TYPE 86 80 98
'C6ORF203 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S22264.  Gene #2124: 'C6ORF203 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
C6ORF203 MUTATED 1 2 1
C6ORF203 WILD-TYPE 88 158 137
'C6ORF203 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.529 (Fisher's exact test), Q value = 0.85

Table S22265.  Gene #2124: 'C6ORF203 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
C6ORF203 MUTATED 1 2 1
C6ORF203 WILD-TYPE 181 131 71
'C6ORF203 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.127 (Fisher's exact test), Q value = 0.4

Table S22266.  Gene #2124: 'C6ORF203 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
C6ORF203 MUTATED 0 3 0 2
C6ORF203 WILD-TYPE 112 93 92 184
'C6ORF203 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0618 (Fisher's exact test), Q value = 0.27

Table S22267.  Gene #2124: 'C6ORF203 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
C6ORF203 MUTATED 0 0 2 0 0 0 3
C6ORF203 WILD-TYPE 60 50 47 40 63 125 96
'C6ORF203 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.684 (Fisher's exact test), Q value = 0.96

Table S22268.  Gene #2124: 'C6ORF203 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
C6ORF203 MUTATED 2 0 0 3
C6ORF203 WILD-TYPE 128 78 68 193
'C6ORF203 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0131 (Fisher's exact test), Q value = 0.11

Table S22269.  Gene #2124: 'C6ORF203 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
C6ORF203 MUTATED 0 0 1 0 4 0 0 0 0
C6ORF203 WILD-TYPE 40 62 27 80 65 48 43 28 74

Figure S5358.  Get High-res Image Gene #2124: 'C6ORF203 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'GPR158 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.318 (Fisher's exact test), Q value = 0.65

Table S22270.  Gene #2125: 'GPR158 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
GPR158 MUTATED 2 1 2 4
GPR158 WILD-TYPE 44 57 62 39
'GPR158 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.519 (Fisher's exact test), Q value = 0.84

Table S22271.  Gene #2125: 'GPR158 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
GPR158 MUTATED 3 2 4
GPR158 WILD-TYPE 48 81 73
'GPR158 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00194 (Fisher's exact test), Q value = 0.037

Table S22272.  Gene #2125: 'GPR158 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
GPR158 MUTATED 20 7 1 1
GPR158 WILD-TYPE 158 176 100 19

Figure S5359.  Get High-res Image Gene #2125: 'GPR158 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'GPR158 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.748 (Fisher's exact test), Q value = 1

Table S22273.  Gene #2125: 'GPR158 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
GPR158 MUTATED 7 4 7
GPR158 WILD-TYPE 80 76 93
'GPR158 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.565 (Fisher's exact test), Q value = 0.87

Table S22274.  Gene #2125: 'GPR158 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
GPR158 MUTATED 4 9 11
GPR158 WILD-TYPE 85 151 127
'GPR158 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.727 (Fisher's exact test), Q value = 0.99

Table S22275.  Gene #2125: 'GPR158 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
GPR158 MUTATED 13 8 3
GPR158 WILD-TYPE 169 125 69
'GPR158 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.31 (Fisher's exact test), Q value = 0.64

Table S22276.  Gene #2125: 'GPR158 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
GPR158 MUTATED 4 5 9 10
GPR158 WILD-TYPE 108 91 83 176
'GPR158 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 3e-05 (Fisher's exact test), Q value = 0.0022

Table S22277.  Gene #2125: 'GPR158 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
GPR158 MUTATED 4 1 12 0 2 3 6
GPR158 WILD-TYPE 56 49 37 40 61 122 93

Figure S5360.  Get High-res Image Gene #2125: 'GPR158 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'GPR158 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.295 (Fisher's exact test), Q value = 0.62

Table S22278.  Gene #2125: 'GPR158 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
GPR158 MUTATED 10 7 2 9
GPR158 WILD-TYPE 120 71 66 187
'GPR158 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00149 (Fisher's exact test), Q value = 0.032

Table S22279.  Gene #2125: 'GPR158 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
GPR158 MUTATED 0 8 3 4 9 3 1 0 0
GPR158 WILD-TYPE 40 54 25 76 60 45 42 28 74

Figure S5361.  Get High-res Image Gene #2125: 'GPR158 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'GPR158 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00172 (Fisher's exact test), Q value = 0.034

Table S22280.  Gene #2125: 'GPR158 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
GPR158 MUTATED 4 0 0 5
GPR158 WILD-TYPE 29 31 27 14

Figure S5362.  Get High-res Image Gene #2125: 'GPR158 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'GPR158 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.521 (Fisher's exact test), Q value = 0.84

Table S22281.  Gene #2125: 'GPR158 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
GPR158 MUTATED 7 0 1 1
GPR158 WILD-TYPE 47 10 23 21
'CSNK1E MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0122 (Fisher's exact test), Q value = 0.11

Table S22282.  Gene #2126: 'CSNK1E MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
CSNK1E MUTATED 8 0 1 0
CSNK1E WILD-TYPE 170 183 100 20

Figure S5363.  Get High-res Image Gene #2126: 'CSNK1E MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'CSNK1E MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.112 (Fisher's exact test), Q value = 0.37

Table S22283.  Gene #2126: 'CSNK1E MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
CSNK1E MUTATED 3 0 5
CSNK1E WILD-TYPE 84 80 95
'CSNK1E MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.696 (Fisher's exact test), Q value = 0.97

Table S22284.  Gene #2126: 'CSNK1E MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
CSNK1E MUTATED 1 5 3
CSNK1E WILD-TYPE 88 155 135
'CSNK1E MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.546 (Fisher's exact test), Q value = 0.86

Table S22285.  Gene #2126: 'CSNK1E MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
CSNK1E MUTATED 4 2 3
CSNK1E WILD-TYPE 178 131 69
'CSNK1E MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.396 (Fisher's exact test), Q value = 0.72

Table S22286.  Gene #2126: 'CSNK1E MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
CSNK1E MUTATED 1 3 3 2
CSNK1E WILD-TYPE 111 93 89 184
'CSNK1E MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0137 (Fisher's exact test), Q value = 0.12

Table S22287.  Gene #2126: 'CSNK1E MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
CSNK1E MUTATED 2 0 4 1 1 0 1
CSNK1E WILD-TYPE 58 50 45 39 62 125 98

Figure S5364.  Get High-res Image Gene #2126: 'CSNK1E MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CSNK1E MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.125 (Fisher's exact test), Q value = 0.39

Table S22288.  Gene #2126: 'CSNK1E MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
CSNK1E MUTATED 1 4 0 4
CSNK1E WILD-TYPE 129 74 68 192
'CSNK1E MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.427 (Fisher's exact test), Q value = 0.75

Table S22289.  Gene #2126: 'CSNK1E MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
CSNK1E MUTATED 1 3 0 1 3 1 0 0 0
CSNK1E WILD-TYPE 39 59 28 79 66 47 43 28 74
'CSNK1E MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.871 (Fisher's exact test), Q value = 1

Table S22290.  Gene #2126: 'CSNK1E MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
CSNK1E MUTATED 1 1 0 1
CSNK1E WILD-TYPE 32 30 27 18
'CSNK1E MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.561 (Fisher's exact test), Q value = 0.87

Table S22291.  Gene #2126: 'CSNK1E MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
CSNK1E MUTATED 3 0 0 0
CSNK1E WILD-TYPE 51 10 24 22
'RNF103 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00659 (Fisher's exact test), Q value = 0.074

Table S22292.  Gene #2127: 'RNF103 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
RNF103 MUTATED 4 0 0 1
RNF103 WILD-TYPE 42 58 64 42

Figure S5365.  Get High-res Image Gene #2127: 'RNF103 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'RNF103 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.252 (Fisher's exact test), Q value = 0.58

Table S22293.  Gene #2127: 'RNF103 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
RNF103 MUTATED 3 1 1
RNF103 WILD-TYPE 48 82 76
'RNF103 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00161 (Fisher's exact test), Q value = 0.033

Table S22294.  Gene #2127: 'RNF103 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
RNF103 MUTATED 9 0 0 0
RNF103 WILD-TYPE 169 183 101 20

Figure S5366.  Get High-res Image Gene #2127: 'RNF103 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'RNF103 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.392 (Fisher's exact test), Q value = 0.72

Table S22295.  Gene #2127: 'RNF103 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
RNF103 MUTATED 1 0 3
RNF103 WILD-TYPE 86 80 97
'RNF103 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.141 (Fisher's exact test), Q value = 0.42

Table S22296.  Gene #2127: 'RNF103 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
RNF103 MUTATED 0 2 5
RNF103 WILD-TYPE 89 158 133
'RNF103 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.884 (Fisher's exact test), Q value = 1

Table S22297.  Gene #2127: 'RNF103 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
RNF103 MUTATED 3 3 1
RNF103 WILD-TYPE 179 130 71
'RNF103 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.373 (Fisher's exact test), Q value = 0.7

Table S22298.  Gene #2127: 'RNF103 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
RNF103 MUTATED 0 2 2 5
RNF103 WILD-TYPE 112 94 90 181
'RNF103 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.71 (Fisher's exact test), Q value = 0.98

Table S22299.  Gene #2127: 'RNF103 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
RNF103 MUTATED 1 1 1 0 1 1 4
RNF103 WILD-TYPE 59 49 48 40 62 124 95
'RNF103 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.364 (Fisher's exact test), Q value = 0.69

Table S22300.  Gene #2127: 'RNF103 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
RNF103 MUTATED 1 1 0 6
RNF103 WILD-TYPE 129 77 68 190
'RNF103 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.326 (Fisher's exact test), Q value = 0.66

Table S22301.  Gene #2127: 'RNF103 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
RNF103 MUTATED 0 1 0 2 4 0 1 0 0
RNF103 WILD-TYPE 40 61 28 78 65 48 42 28 74
'CEBPA MUTATION STATUS' versus 'CN_CNMF'

P value = 0.911 (Fisher's exact test), Q value = 1

Table S22302.  Gene #2128: 'CEBPA MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
CEBPA MUTATED 8 6 3 0
CEBPA WILD-TYPE 170 177 98 20
'CEBPA MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.86 (Fisher's exact test), Q value = 1

Table S22303.  Gene #2128: 'CEBPA MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
CEBPA MUTATED 6 4 7
CEBPA WILD-TYPE 81 76 93
'CEBPA MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.001 (Fisher's exact test), Q value = 0.024

Table S22304.  Gene #2128: 'CEBPA MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
CEBPA MUTATED 0 3 12
CEBPA WILD-TYPE 89 157 126

Figure S5367.  Get High-res Image Gene #2128: 'CEBPA MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'CEBPA MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0621 (Fisher's exact test), Q value = 0.27

Table S22305.  Gene #2128: 'CEBPA MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
CEBPA MUTATED 11 4 0
CEBPA WILD-TYPE 171 129 72
'CEBPA MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00058 (Fisher's exact test), Q value = 0.017

Table S22306.  Gene #2128: 'CEBPA MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
CEBPA MUTATED 6 7 4 0
CEBPA WILD-TYPE 106 89 88 186

Figure S5368.  Get High-res Image Gene #2128: 'CEBPA MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'CEBPA MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 2e-05 (Fisher's exact test), Q value = 0.0017

Table S22307.  Gene #2128: 'CEBPA MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
CEBPA MUTATED 1 3 7 3 3 0 0
CEBPA WILD-TYPE 59 47 42 37 60 125 99

Figure S5369.  Get High-res Image Gene #2128: 'CEBPA MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CEBPA MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S22308.  Gene #2128: 'CEBPA MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
CEBPA MUTATED 14 2 1 0
CEBPA WILD-TYPE 116 76 67 196

Figure S5370.  Get High-res Image Gene #2128: 'CEBPA MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'CEBPA MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0585 (Fisher's exact test), Q value = 0.26

Table S22309.  Gene #2128: 'CEBPA MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
CEBPA MUTATED 4 3 0 1 5 2 2 0 0
CEBPA WILD-TYPE 36 59 28 79 64 46 41 28 74
'CEBPA MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.664 (Fisher's exact test), Q value = 0.95

Table S22310.  Gene #2128: 'CEBPA MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
CEBPA MUTATED 1 1 1 2
CEBPA WILD-TYPE 32 30 26 17
'CEBPA MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.892 (Fisher's exact test), Q value = 1

Table S22311.  Gene #2128: 'CEBPA MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
CEBPA MUTATED 2 0 2 1
CEBPA WILD-TYPE 52 10 22 21
'YWHAH MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S22312.  Gene #2129: 'YWHAH MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
YWHAH MUTATED 2 2 1 0
YWHAH WILD-TYPE 176 181 100 20
'YWHAH MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.112 (Fisher's exact test), Q value = 0.37

Table S22313.  Gene #2129: 'YWHAH MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
YWHAH MUTATED 0 3 1
YWHAH WILD-TYPE 87 77 99
'YWHAH MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.555 (Fisher's exact test), Q value = 0.87

Table S22314.  Gene #2129: 'YWHAH MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
YWHAH MUTATED 0 3 1
YWHAH WILD-TYPE 89 157 137
'YWHAH MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.328 (Fisher's exact test), Q value = 0.66

Table S22315.  Gene #2129: 'YWHAH MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
YWHAH MUTATED 1 3 0
YWHAH WILD-TYPE 181 130 72
'YWHAH MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.244 (Fisher's exact test), Q value = 0.57

Table S22316.  Gene #2129: 'YWHAH MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
YWHAH MUTATED 3 1 0 1
YWHAH WILD-TYPE 109 95 92 185
'YWHAH MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0535 (Fisher's exact test), Q value = 0.25

Table S22317.  Gene #2129: 'YWHAH MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
YWHAH MUTATED 3 1 0 0 0 0 1
YWHAH WILD-TYPE 57 49 49 40 63 125 98
'YWHAH MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.631 (Fisher's exact test), Q value = 0.93

Table S22318.  Gene #2129: 'YWHAH MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
YWHAH MUTATED 2 1 1 1
YWHAH WILD-TYPE 128 77 67 195
'YWHAH MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0694 (Fisher's exact test), Q value = 0.28

Table S22319.  Gene #2129: 'YWHAH MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
YWHAH MUTATED 0 0 2 1 0 1 1 0 0
YWHAH WILD-TYPE 40 62 26 79 69 47 42 28 74
'OR5A1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.142 (Fisher's exact test), Q value = 0.42

Table S22320.  Gene #2130: 'OR5A1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
OR5A1 MUTATED 3 1 0 1
OR5A1 WILD-TYPE 175 182 101 19
'OR5A1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S22321.  Gene #2130: 'OR5A1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
OR5A1 MUTATED 2 1 2
OR5A1 WILD-TYPE 85 79 98
'OR5A1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.546 (Fisher's exact test), Q value = 0.86

Table S22322.  Gene #2130: 'OR5A1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
OR5A1 MUTATED 1 1 3
OR5A1 WILD-TYPE 88 159 135
'OR5A1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.721 (Fisher's exact test), Q value = 0.99

Table S22323.  Gene #2130: 'OR5A1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
OR5A1 MUTATED 3 2 0
OR5A1 WILD-TYPE 179 131 72
'OR5A1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0565 (Fisher's exact test), Q value = 0.26

Table S22324.  Gene #2130: 'OR5A1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
OR5A1 MUTATED 1 3 1 0
OR5A1 WILD-TYPE 111 93 91 186
'OR5A1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0568 (Fisher's exact test), Q value = 0.26

Table S22325.  Gene #2130: 'OR5A1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
OR5A1 MUTATED 2 1 1 1 0 0 0
OR5A1 WILD-TYPE 58 49 48 39 63 125 99
'OR5A1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.127 (Fisher's exact test), Q value = 0.4

Table S22326.  Gene #2130: 'OR5A1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
OR5A1 MUTATED 4 0 0 1
OR5A1 WILD-TYPE 126 78 68 195
'OR5A1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.35 (Fisher's exact test), Q value = 0.68

Table S22327.  Gene #2130: 'OR5A1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
OR5A1 MUTATED 2 0 0 0 1 1 0 0 1
OR5A1 WILD-TYPE 38 62 28 80 68 47 43 28 73
'IP6K3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.132 (Fisher's exact test), Q value = 0.41

Table S22328.  Gene #2131: 'IP6K3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
IP6K3 MUTATED 1 0 1 3
IP6K3 WILD-TYPE 45 58 63 40
'IP6K3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.74 (Fisher's exact test), Q value = 1

Table S22329.  Gene #2131: 'IP6K3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
IP6K3 MUTATED 2 2 1
IP6K3 WILD-TYPE 49 81 76
'IP6K3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0376 (Fisher's exact test), Q value = 0.2

Table S22330.  Gene #2131: 'IP6K3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
IP6K3 MUTATED 7 0 2 0
IP6K3 WILD-TYPE 171 183 99 20

Figure S5371.  Get High-res Image Gene #2131: 'IP6K3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'IP6K3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0188 (Fisher's exact test), Q value = 0.14

Table S22331.  Gene #2131: 'IP6K3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
IP6K3 MUTATED 4 0 0
IP6K3 WILD-TYPE 83 80 100

Figure S5372.  Get High-res Image Gene #2131: 'IP6K3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'IP6K3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.508 (Fisher's exact test), Q value = 0.83

Table S22332.  Gene #2131: 'IP6K3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
IP6K3 MUTATED 0 3 3
IP6K3 WILD-TYPE 89 157 135
'IP6K3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.664 (Fisher's exact test), Q value = 0.95

Table S22333.  Gene #2131: 'IP6K3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
IP6K3 MUTATED 4 2 0
IP6K3 WILD-TYPE 178 131 72
'IP6K3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.288 (Fisher's exact test), Q value = 0.62

Table S22334.  Gene #2131: 'IP6K3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
IP6K3 MUTATED 0 2 3 4
IP6K3 WILD-TYPE 112 94 89 182
'IP6K3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.61 (Fisher's exact test), Q value = 0.91

Table S22335.  Gene #2131: 'IP6K3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
IP6K3 MUTATED 1 0 2 1 1 1 3
IP6K3 WILD-TYPE 59 50 47 39 62 124 96
'IP6K3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.338 (Fisher's exact test), Q value = 0.67

Table S22336.  Gene #2131: 'IP6K3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
IP6K3 MUTATED 1 2 0 6
IP6K3 WILD-TYPE 129 76 68 190
'IP6K3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.471 (Fisher's exact test), Q value = 0.8

Table S22337.  Gene #2131: 'IP6K3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
IP6K3 MUTATED 1 2 1 2 3 0 0 0 0
IP6K3 WILD-TYPE 39 60 27 78 66 48 43 28 74
'CLSTN1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00601 (Fisher's exact test), Q value = 0.071

Table S22338.  Gene #2132: 'CLSTN1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
CLSTN1 MUTATED 4 0 0 1
CLSTN1 WILD-TYPE 42 58 64 42

Figure S5373.  Get High-res Image Gene #2132: 'CLSTN1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'CLSTN1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.02 (Fisher's exact test), Q value = 0.14

Table S22339.  Gene #2132: 'CLSTN1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
CLSTN1 MUTATED 4 1 0
CLSTN1 WILD-TYPE 47 82 77

Figure S5374.  Get High-res Image Gene #2132: 'CLSTN1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'CLSTN1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0012 (Fisher's exact test), Q value = 0.028

Table S22340.  Gene #2132: 'CLSTN1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
CLSTN1 MUTATED 13 2 0 1
CLSTN1 WILD-TYPE 165 181 101 19

Figure S5375.  Get High-res Image Gene #2132: 'CLSTN1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'CLSTN1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0425 (Fisher's exact test), Q value = 0.22

Table S22341.  Gene #2132: 'CLSTN1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
CLSTN1 MUTATED 6 0 5
CLSTN1 WILD-TYPE 81 80 95

Figure S5376.  Get High-res Image Gene #2132: 'CLSTN1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'CLSTN1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.167 (Fisher's exact test), Q value = 0.46

Table S22342.  Gene #2132: 'CLSTN1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
CLSTN1 MUTATED 1 5 8
CLSTN1 WILD-TYPE 88 155 130
'CLSTN1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.824 (Fisher's exact test), Q value = 1

Table S22343.  Gene #2132: 'CLSTN1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
CLSTN1 MUTATED 6 6 2
CLSTN1 WILD-TYPE 176 127 70
'CLSTN1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.177 (Fisher's exact test), Q value = 0.48

Table S22344.  Gene #2132: 'CLSTN1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
CLSTN1 MUTATED 1 5 5 5
CLSTN1 WILD-TYPE 111 91 87 181
'CLSTN1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 8e-05 (Fisher's exact test), Q value = 0.0045

Table S22345.  Gene #2132: 'CLSTN1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
CLSTN1 MUTATED 1 2 7 0 0 0 6
CLSTN1 WILD-TYPE 59 48 42 40 63 125 93

Figure S5377.  Get High-res Image Gene #2132: 'CLSTN1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CLSTN1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.876 (Fisher's exact test), Q value = 1

Table S22346.  Gene #2132: 'CLSTN1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
CLSTN1 MUTATED 5 3 1 7
CLSTN1 WILD-TYPE 125 75 67 189
'CLSTN1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0304 (Fisher's exact test), Q value = 0.18

Table S22347.  Gene #2132: 'CLSTN1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
CLSTN1 MUTATED 1 4 1 0 5 1 0 3 1
CLSTN1 WILD-TYPE 39 58 27 80 64 47 43 25 73

Figure S5378.  Get High-res Image Gene #2132: 'CLSTN1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'CLSTN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00352 (Fisher's exact test), Q value = 0.054

Table S22348.  Gene #2132: 'CLSTN1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
CLSTN1 MUTATED 1 0 0 4
CLSTN1 WILD-TYPE 32 31 27 15

Figure S5379.  Get High-res Image Gene #2132: 'CLSTN1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'CLSTN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S22349.  Gene #2132: 'CLSTN1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
CLSTN1 MUTATED 3 0 1 1
CLSTN1 WILD-TYPE 51 10 23 21
'EPC2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0645 (Fisher's exact test), Q value = 0.28

Table S22350.  Gene #2133: 'EPC2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
EPC2 MUTATED 8 1 1 0
EPC2 WILD-TYPE 170 182 100 20
'EPC2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.181 (Fisher's exact test), Q value = 0.48

Table S22351.  Gene #2133: 'EPC2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
EPC2 MUTATED 1 2 6
EPC2 WILD-TYPE 86 78 94
'EPC2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.511 (Fisher's exact test), Q value = 0.83

Table S22352.  Gene #2133: 'EPC2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
EPC2 MUTATED 1 3 5
EPC2 WILD-TYPE 88 157 133
'EPC2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S22353.  Gene #2133: 'EPC2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
EPC2 MUTATED 5 3 1
EPC2 WILD-TYPE 177 130 71
'EPC2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.105 (Fisher's exact test), Q value = 0.36

Table S22354.  Gene #2133: 'EPC2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
EPC2 MUTATED 2 4 3 1
EPC2 WILD-TYPE 110 92 89 185
'EPC2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00026 (Fisher's exact test), Q value = 0.0099

Table S22355.  Gene #2133: 'EPC2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
EPC2 MUTATED 2 1 6 0 0 0 1
EPC2 WILD-TYPE 58 49 43 40 63 125 98

Figure S5380.  Get High-res Image Gene #2133: 'EPC2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'EPC2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.168 (Fisher's exact test), Q value = 0.46

Table S22356.  Gene #2133: 'EPC2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
EPC2 MUTATED 4 2 2 1
EPC2 WILD-TYPE 126 76 66 195
'EPC2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0648 (Fisher's exact test), Q value = 0.28

Table S22357.  Gene #2133: 'EPC2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
EPC2 MUTATED 0 3 1 0 3 0 2 0 0
EPC2 WILD-TYPE 40 59 27 80 66 48 41 28 74
'EPC2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.27 (Fisher's exact test), Q value = 0.6

Table S22358.  Gene #2133: 'EPC2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
EPC2 MUTATED 1 0 1 2
EPC2 WILD-TYPE 32 31 26 17
'EPC2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.87 (Fisher's exact test), Q value = 1

Table S22359.  Gene #2133: 'EPC2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
EPC2 MUTATED 3 0 1 0
EPC2 WILD-TYPE 51 10 23 22
'SKIV2L MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0669 (Fisher's exact test), Q value = 0.28

Table S22360.  Gene #2134: 'SKIV2L MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
SKIV2L MUTATED 1 0 0 2
SKIV2L WILD-TYPE 45 58 64 41
'SKIV2L MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.252 (Fisher's exact test), Q value = 0.58

Table S22361.  Gene #2134: 'SKIV2L MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
SKIV2L MUTATED 2 1 0
SKIV2L WILD-TYPE 49 82 77
'SKIV2L MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0328 (Fisher's exact test), Q value = 0.18

Table S22362.  Gene #2134: 'SKIV2L MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
SKIV2L MUTATED 9 3 0 1
SKIV2L WILD-TYPE 169 180 101 19

Figure S5381.  Get High-res Image Gene #2134: 'SKIV2L MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'SKIV2L MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.122 (Fisher's exact test), Q value = 0.39

Table S22363.  Gene #2134: 'SKIV2L MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
SKIV2L MUTATED 2 1 7
SKIV2L WILD-TYPE 85 79 93
'SKIV2L MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.699 (Fisher's exact test), Q value = 0.97

Table S22364.  Gene #2134: 'SKIV2L MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
SKIV2L MUTATED 4 4 4
SKIV2L WILD-TYPE 85 156 134
'SKIV2L MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.396 (Fisher's exact test), Q value = 0.72

Table S22365.  Gene #2134: 'SKIV2L MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
SKIV2L MUTATED 7 2 3
SKIV2L WILD-TYPE 175 131 69
'SKIV2L MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0389 (Fisher's exact test), Q value = 0.21

Table S22366.  Gene #2134: 'SKIV2L MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
SKIV2L MUTATED 2 7 1 3
SKIV2L WILD-TYPE 110 89 91 183

Figure S5382.  Get High-res Image Gene #2134: 'SKIV2L MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'SKIV2L MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.107 (Fisher's exact test), Q value = 0.36

Table S22367.  Gene #2134: 'SKIV2L MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
SKIV2L MUTATED 1 3 4 1 1 1 2
SKIV2L WILD-TYPE 59 47 45 39 62 124 97
'SKIV2L MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0211 (Fisher's exact test), Q value = 0.15

Table S22368.  Gene #2134: 'SKIV2L MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
SKIV2L MUTATED 7 4 0 2
SKIV2L WILD-TYPE 123 74 68 194

Figure S5383.  Get High-res Image Gene #2134: 'SKIV2L MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'SKIV2L MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0854 (Fisher's exact test), Q value = 0.32

Table S22369.  Gene #2134: 'SKIV2L MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
SKIV2L MUTATED 2 2 3 1 3 0 1 1 0
SKIV2L WILD-TYPE 38 60 25 79 66 48 42 27 74
'SKIV2L MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.644 (Fisher's exact test), Q value = 0.93

Table S22370.  Gene #2134: 'SKIV2L MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
SKIV2L MUTATED 1 2 0 1
SKIV2L WILD-TYPE 32 29 27 18
'SKIV2L MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.606 (Fisher's exact test), Q value = 0.91

Table S22371.  Gene #2134: 'SKIV2L MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
SKIV2L MUTATED 2 1 1 0
SKIV2L WILD-TYPE 52 9 23 22
'COL5A2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00694 (Fisher's exact test), Q value = 0.077

Table S22372.  Gene #2135: 'COL5A2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
COL5A2 MUTATED 5 1 0 4
COL5A2 WILD-TYPE 41 57 64 39

Figure S5384.  Get High-res Image Gene #2135: 'COL5A2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'COL5A2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.231 (Fisher's exact test), Q value = 0.55

Table S22373.  Gene #2135: 'COL5A2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
COL5A2 MUTATED 5 3 2
COL5A2 WILD-TYPE 46 80 75
'COL5A2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0299 (Fisher's exact test), Q value = 0.18

Table S22374.  Gene #2135: 'COL5A2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
COL5A2 MUTATED 14 3 5 0
COL5A2 WILD-TYPE 164 180 96 20

Figure S5385.  Get High-res Image Gene #2135: 'COL5A2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'COL5A2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00964 (Fisher's exact test), Q value = 0.093

Table S22375.  Gene #2135: 'COL5A2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
COL5A2 MUTATED 3 0 9
COL5A2 WILD-TYPE 84 80 91

Figure S5386.  Get High-res Image Gene #2135: 'COL5A2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'COL5A2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.353 (Fisher's exact test), Q value = 0.68

Table S22376.  Gene #2135: 'COL5A2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
COL5A2 MUTATED 2 10 6
COL5A2 WILD-TYPE 87 150 132
'COL5A2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.329 (Fisher's exact test), Q value = 0.66

Table S22377.  Gene #2135: 'COL5A2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
COL5A2 MUTATED 9 8 1
COL5A2 WILD-TYPE 173 125 71
'COL5A2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00184 (Fisher's exact test), Q value = 0.036

Table S22378.  Gene #2135: 'COL5A2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
COL5A2 MUTATED 0 10 3 9
COL5A2 WILD-TYPE 112 86 89 177

Figure S5387.  Get High-res Image Gene #2135: 'COL5A2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'COL5A2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0113 (Fisher's exact test), Q value = 0.1

Table S22379.  Gene #2135: 'COL5A2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
COL5A2 MUTATED 1 4 5 2 0 2 8
COL5A2 WILD-TYPE 59 46 44 38 63 123 91

Figure S5388.  Get High-res Image Gene #2135: 'COL5A2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'COL5A2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.386 (Fisher's exact test), Q value = 0.71

Table S22380.  Gene #2135: 'COL5A2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
COL5A2 MUTATED 5 1 3 12
COL5A2 WILD-TYPE 125 77 65 184
'COL5A2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0262 (Fisher's exact test), Q value = 0.16

Table S22381.  Gene #2135: 'COL5A2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
COL5A2 MUTATED 2 2 2 1 8 0 3 2 1
COL5A2 WILD-TYPE 38 60 26 79 61 48 40 26 73

Figure S5389.  Get High-res Image Gene #2135: 'COL5A2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'COL5A2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.781 (Fisher's exact test), Q value = 1

Table S22382.  Gene #2135: 'COL5A2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
COL5A2 MUTATED 1 0 1 1
COL5A2 WILD-TYPE 32 31 26 18
'COL5A2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S22383.  Gene #2135: 'COL5A2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
COL5A2 MUTATED 2 0 1 0
COL5A2 WILD-TYPE 52 10 23 22
'CPO MUTATION STATUS' versus 'CN_CNMF'

P value = 0.748 (Fisher's exact test), Q value = 1

Table S22384.  Gene #2136: 'CPO MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
CPO MUTATED 5 3 1 0
CPO WILD-TYPE 173 180 100 20
'CPO MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.569 (Fisher's exact test), Q value = 0.88

Table S22385.  Gene #2136: 'CPO MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
CPO MUTATED 1 3 3
CPO WILD-TYPE 86 77 97
'CPO MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.545 (Fisher's exact test), Q value = 0.86

Table S22386.  Gene #2136: 'CPO MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
CPO MUTATED 1 1 3
CPO WILD-TYPE 88 159 135
'CPO MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.717 (Fisher's exact test), Q value = 0.99

Table S22387.  Gene #2136: 'CPO MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
CPO MUTATED 3 2 0
CPO WILD-TYPE 179 131 72
'CPO MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.6 (Fisher's exact test), Q value = 0.9

Table S22388.  Gene #2136: 'CPO MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
CPO MUTATED 2 3 2 2
CPO WILD-TYPE 110 93 90 184
'CPO MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.61 (Fisher's exact test), Q value = 0.91

Table S22389.  Gene #2136: 'CPO MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
CPO MUTATED 1 2 1 1 2 1 1
CPO WILD-TYPE 59 48 48 39 61 124 98
'CPO MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.31 (Fisher's exact test), Q value = 0.64

Table S22390.  Gene #2136: 'CPO MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
CPO MUTATED 5 1 0 3
CPO WILD-TYPE 125 77 68 193
'CPO MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.519 (Fisher's exact test), Q value = 0.84

Table S22391.  Gene #2136: 'CPO MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
CPO MUTATED 2 0 1 3 1 0 1 0 1
CPO WILD-TYPE 38 62 27 77 68 48 42 28 73
'CLK4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.526 (Fisher's exact test), Q value = 0.85

Table S22392.  Gene #2137: 'CLK4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
CLK4 MUTATED 4 3 1 1
CLK4 WILD-TYPE 174 180 100 19
'CLK4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.711 (Fisher's exact test), Q value = 0.98

Table S22393.  Gene #2137: 'CLK4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
CLK4 MUTATED 3 1 3
CLK4 WILD-TYPE 84 79 97
'CLK4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.815 (Fisher's exact test), Q value = 1

Table S22394.  Gene #2137: 'CLK4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
CLK4 MUTATED 2 4 2
CLK4 WILD-TYPE 87 156 136
'CLK4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.465 (Fisher's exact test), Q value = 0.79

Table S22395.  Gene #2137: 'CLK4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
CLK4 MUTATED 5 1 2
CLK4 WILD-TYPE 177 132 70
'CLK4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.118 (Fisher's exact test), Q value = 0.38

Table S22396.  Gene #2137: 'CLK4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
CLK4 MUTATED 4 0 3 2
CLK4 WILD-TYPE 108 96 89 184
'CLK4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0615 (Fisher's exact test), Q value = 0.27

Table S22397.  Gene #2137: 'CLK4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
CLK4 MUTATED 2 0 3 0 2 0 2
CLK4 WILD-TYPE 58 50 46 40 61 125 97
'CLK4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.318 (Fisher's exact test), Q value = 0.65

Table S22398.  Gene #2137: 'CLK4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
CLK4 MUTATED 2 3 2 2
CLK4 WILD-TYPE 128 75 66 194
'CLK4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.321 (Fisher's exact test), Q value = 0.65

Table S22399.  Gene #2137: 'CLK4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
CLK4 MUTATED 1 2 1 0 2 1 2 0 0
CLK4 WILD-TYPE 39 60 27 80 67 47 41 28 74
'CLK4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S22400.  Gene #2137: 'CLK4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
CLK4 MUTATED 2 1 1 1
CLK4 WILD-TYPE 31 30 26 18
'CLK4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.145 (Fisher's exact test), Q value = 0.42

Table S22401.  Gene #2137: 'CLK4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
CLK4 MUTATED 2 0 0 3
CLK4 WILD-TYPE 52 10 24 19
'SLC9A2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0485 (Fisher's exact test), Q value = 0.24

Table S22402.  Gene #2138: 'SLC9A2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
SLC9A2 MUTATED 8 1 2 1
SLC9A2 WILD-TYPE 170 182 99 19

Figure S5390.  Get High-res Image Gene #2138: 'SLC9A2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'SLC9A2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.309 (Fisher's exact test), Q value = 0.64

Table S22403.  Gene #2138: 'SLC9A2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
SLC9A2 MUTATED 5 1 4
SLC9A2 WILD-TYPE 82 79 96
'SLC9A2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.213 (Fisher's exact test), Q value = 0.52

Table S22404.  Gene #2138: 'SLC9A2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
SLC9A2 MUTATED 0 4 5
SLC9A2 WILD-TYPE 89 156 133
'SLC9A2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.364 (Fisher's exact test), Q value = 0.69

Table S22405.  Gene #2138: 'SLC9A2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
SLC9A2 MUTATED 6 3 0
SLC9A2 WILD-TYPE 176 130 72
'SLC9A2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0502 (Fisher's exact test), Q value = 0.24

Table S22406.  Gene #2138: 'SLC9A2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
SLC9A2 MUTATED 1 4 5 2
SLC9A2 WILD-TYPE 111 92 87 184
'SLC9A2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.008 (Fisher's exact test), Q value = 0.084

Table S22407.  Gene #2138: 'SLC9A2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
SLC9A2 MUTATED 0 1 3 1 5 0 2
SLC9A2 WILD-TYPE 60 49 46 39 58 125 97

Figure S5391.  Get High-res Image Gene #2138: 'SLC9A2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'SLC9A2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.79 (Fisher's exact test), Q value = 1

Table S22408.  Gene #2138: 'SLC9A2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
SLC9A2 MUTATED 3 3 2 4
SLC9A2 WILD-TYPE 127 75 66 192
'SLC9A2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.503 (Fisher's exact test), Q value = 0.83

Table S22409.  Gene #2138: 'SLC9A2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
SLC9A2 MUTATED 1 4 0 1 3 0 1 1 1
SLC9A2 WILD-TYPE 39 58 28 79 66 48 42 27 73
'SLC9A2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.466 (Fisher's exact test), Q value = 0.79

Table S22410.  Gene #2138: 'SLC9A2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
SLC9A2 MUTATED 0 2 2 1
SLC9A2 WILD-TYPE 33 29 25 18
'SLC9A2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.696 (Fisher's exact test), Q value = 0.97

Table S22411.  Gene #2138: 'SLC9A2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
SLC9A2 MUTATED 2 1 1 1
SLC9A2 WILD-TYPE 52 9 23 21
'KIAA0196 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0416 (Fisher's exact test), Q value = 0.21

Table S22412.  Gene #2139: 'KIAA0196 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
KIAA0196 MUTATED 0 1 0 3
KIAA0196 WILD-TYPE 46 57 64 40

Figure S5392.  Get High-res Image Gene #2139: 'KIAA0196 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'KIAA0196 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.231 (Fisher's exact test), Q value = 0.55

Table S22413.  Gene #2139: 'KIAA0196 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
KIAA0196 MUTATED 2 2 0
KIAA0196 WILD-TYPE 49 81 77
'KIAA0196 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.072 (Fisher's exact test), Q value = 0.29

Table S22414.  Gene #2139: 'KIAA0196 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
KIAA0196 MUTATED 7 3 0 1
KIAA0196 WILD-TYPE 171 180 101 19
'KIAA0196 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S22415.  Gene #2139: 'KIAA0196 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
KIAA0196 MUTATED 2 2 3
KIAA0196 WILD-TYPE 85 78 97
'KIAA0196 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.104 (Fisher's exact test), Q value = 0.36

Table S22416.  Gene #2139: 'KIAA0196 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
KIAA0196 MUTATED 0 7 3
KIAA0196 WILD-TYPE 89 153 135
'KIAA0196 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.917 (Fisher's exact test), Q value = 1

Table S22417.  Gene #2139: 'KIAA0196 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
KIAA0196 MUTATED 5 4 1
KIAA0196 WILD-TYPE 177 129 71
'KIAA0196 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.489 (Fisher's exact test), Q value = 0.82

Table S22418.  Gene #2139: 'KIAA0196 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
KIAA0196 MUTATED 3 4 1 3
KIAA0196 WILD-TYPE 109 92 91 183
'KIAA0196 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.171 (Fisher's exact test), Q value = 0.47

Table S22419.  Gene #2139: 'KIAA0196 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
KIAA0196 MUTATED 2 3 2 0 0 1 3
KIAA0196 WILD-TYPE 58 47 47 40 63 124 96
'KIAA0196 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.662 (Fisher's exact test), Q value = 0.95

Table S22420.  Gene #2139: 'KIAA0196 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
KIAA0196 MUTATED 3 1 3 4
KIAA0196 WILD-TYPE 127 77 65 192
'KIAA0196 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.173 (Fisher's exact test), Q value = 0.47

Table S22421.  Gene #2139: 'KIAA0196 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
KIAA0196 MUTATED 1 2 2 0 1 1 3 0 1
KIAA0196 WILD-TYPE 39 60 26 80 68 47 40 28 73
'ANGPTL2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.022 (Fisher's exact test), Q value = 0.15

Table S22422.  Gene #2140: 'ANGPTL2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ANGPTL2 MUTATED 2 0 0 3
ANGPTL2 WILD-TYPE 44 58 64 40

Figure S5393.  Get High-res Image Gene #2140: 'ANGPTL2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'ANGPTL2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0185 (Fisher's exact test), Q value = 0.14

Table S22423.  Gene #2140: 'ANGPTL2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ANGPTL2 MUTATED 4 1 0
ANGPTL2 WILD-TYPE 47 82 77

Figure S5394.  Get High-res Image Gene #2140: 'ANGPTL2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'ANGPTL2 MUTATION STATUS' versus 'CN_CNMF'

P value = 4e-05 (Fisher's exact test), Q value = 0.0027

Table S22424.  Gene #2140: 'ANGPTL2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ANGPTL2 MUTATED 13 0 0 0
ANGPTL2 WILD-TYPE 165 183 101 20

Figure S5395.  Get High-res Image Gene #2140: 'ANGPTL2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ANGPTL2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.203 (Fisher's exact test), Q value = 0.51

Table S22425.  Gene #2140: 'ANGPTL2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ANGPTL2 MUTATED 3 0 4
ANGPTL2 WILD-TYPE 84 80 96
'ANGPTL2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.272 (Fisher's exact test), Q value = 0.6

Table S22426.  Gene #2140: 'ANGPTL2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ANGPTL2 MUTATED 3 2 6
ANGPTL2 WILD-TYPE 86 158 132
'ANGPTL2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.849 (Fisher's exact test), Q value = 1

Table S22427.  Gene #2140: 'ANGPTL2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ANGPTL2 MUTATED 6 4 1
ANGPTL2 WILD-TYPE 176 129 71
'ANGPTL2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0739 (Fisher's exact test), Q value = 0.29

Table S22428.  Gene #2140: 'ANGPTL2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ANGPTL2 MUTATED 0 3 5 5
ANGPTL2 WILD-TYPE 112 93 87 181
'ANGPTL2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S22429.  Gene #2140: 'ANGPTL2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ANGPTL2 MUTATED 0 1 7 0 0 0 5
ANGPTL2 WILD-TYPE 60 49 42 40 63 125 94

Figure S5396.  Get High-res Image Gene #2140: 'ANGPTL2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ANGPTL2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.281 (Fisher's exact test), Q value = 0.61

Table S22430.  Gene #2140: 'ANGPTL2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ANGPTL2 MUTATED 2 2 0 8
ANGPTL2 WILD-TYPE 128 76 68 188
'ANGPTL2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0174 (Fisher's exact test), Q value = 0.13

Table S22431.  Gene #2140: 'ANGPTL2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ANGPTL2 MUTATED 0 3 1 0 6 0 0 1 1
ANGPTL2 WILD-TYPE 40 59 27 80 63 48 43 27 73

Figure S5397.  Get High-res Image Gene #2140: 'ANGPTL2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'ANGPTL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00473 (Fisher's exact test), Q value = 0.062

Table S22432.  Gene #2140: 'ANGPTL2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
ANGPTL2 MUTATED 0 0 0 3
ANGPTL2 WILD-TYPE 33 31 27 16

Figure S5398.  Get High-res Image Gene #2140: 'ANGPTL2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'ANGPTL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S22433.  Gene #2140: 'ANGPTL2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
ANGPTL2 MUTATED 2 0 1 0
ANGPTL2 WILD-TYPE 52 10 23 22
'C2ORF49 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0641 (Fisher's exact test), Q value = 0.27

Table S22434.  Gene #2141: 'C2ORF49 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
C2ORF49 MUTATED 1 0 0 2
C2ORF49 WILD-TYPE 45 58 64 41
'C2ORF49 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S22435.  Gene #2141: 'C2ORF49 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
C2ORF49 MUTATED 1 1 1
C2ORF49 WILD-TYPE 50 82 76
'C2ORF49 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0437 (Fisher's exact test), Q value = 0.22

Table S22436.  Gene #2141: 'C2ORF49 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
C2ORF49 MUTATED 5 0 0 0
C2ORF49 WILD-TYPE 173 183 101 20

Figure S5399.  Get High-res Image Gene #2141: 'C2ORF49 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'C2ORF49 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.684 (Fisher's exact test), Q value = 0.96

Table S22437.  Gene #2141: 'C2ORF49 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
C2ORF49 MUTATED 0 2 2
C2ORF49 WILD-TYPE 89 158 136
'C2ORF49 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.83 (Fisher's exact test), Q value = 1

Table S22438.  Gene #2141: 'C2ORF49 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
C2ORF49 MUTATED 2 2 0
C2ORF49 WILD-TYPE 180 131 72
'C2ORF49 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.686 (Fisher's exact test), Q value = 0.96

Table S22439.  Gene #2141: 'C2ORF49 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
C2ORF49 MUTATED 0 1 1 3
C2ORF49 WILD-TYPE 112 95 91 183
'C2ORF49 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0613 (Fisher's exact test), Q value = 0.27

Table S22440.  Gene #2141: 'C2ORF49 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
C2ORF49 MUTATED 0 0 2 0 0 0 3
C2ORF49 WILD-TYPE 60 50 47 40 63 125 96
'C2ORF49 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.93 (Fisher's exact test), Q value = 1

Table S22441.  Gene #2141: 'C2ORF49 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
C2ORF49 MUTATED 1 1 0 3
C2ORF49 WILD-TYPE 129 77 68 193
'C2ORF49 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0145 (Fisher's exact test), Q value = 0.12

Table S22442.  Gene #2141: 'C2ORF49 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
C2ORF49 MUTATED 1 1 2 0 0 0 0 1 0
C2ORF49 WILD-TYPE 39 61 26 80 69 48 43 27 74

Figure S5400.  Get High-res Image Gene #2141: 'C2ORF49 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'ATG4D MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.461 (Fisher's exact test), Q value = 0.79

Table S22443.  Gene #2142: 'ATG4D MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ATG4D MUTATED 2 0 2 1
ATG4D WILD-TYPE 44 58 62 42
'ATG4D MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.638 (Fisher's exact test), Q value = 0.93

Table S22444.  Gene #2142: 'ATG4D MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ATG4D MUTATED 2 1 2
ATG4D WILD-TYPE 49 82 75
'ATG4D MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0808 (Fisher's exact test), Q value = 0.31

Table S22445.  Gene #2142: 'ATG4D MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ATG4D MUTATED 9 2 1 0
ATG4D WILD-TYPE 169 181 100 20
'ATG4D MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.633 (Fisher's exact test), Q value = 0.93

Table S22446.  Gene #2142: 'ATG4D MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ATG4D MUTATED 2 1 4
ATG4D WILD-TYPE 85 79 96
'ATG4D MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.177 (Fisher's exact test), Q value = 0.48

Table S22447.  Gene #2142: 'ATG4D MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ATG4D MUTATED 4 2 6
ATG4D WILD-TYPE 85 158 132
'ATG4D MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.309 (Fisher's exact test), Q value = 0.64

Table S22448.  Gene #2142: 'ATG4D MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ATG4D MUTATED 6 2 4
ATG4D WILD-TYPE 176 131 68
'ATG4D MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.145 (Fisher's exact test), Q value = 0.42

Table S22449.  Gene #2142: 'ATG4D MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ATG4D MUTATED 0 4 3 5
ATG4D WILD-TYPE 112 92 89 181
'ATG4D MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0833 (Fisher's exact test), Q value = 0.31

Table S22450.  Gene #2142: 'ATG4D MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ATG4D MUTATED 1 0 5 1 1 2 2
ATG4D WILD-TYPE 59 50 44 39 62 123 97
'ATG4D MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.419 (Fisher's exact test), Q value = 0.75

Table S22451.  Gene #2142: 'ATG4D MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ATG4D MUTATED 5 1 0 6
ATG4D WILD-TYPE 125 77 68 190
'ATG4D MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.454 (Fisher's exact test), Q value = 0.78

Table S22452.  Gene #2142: 'ATG4D MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ATG4D MUTATED 1 3 0 0 3 1 2 1 1
ATG4D WILD-TYPE 39 59 28 80 66 47 41 27 73
'MUS81 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.105 (Fisher's exact test), Q value = 0.36

Table S22453.  Gene #2143: 'MUS81 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
MUS81 MUTATED 6 1 0 0
MUS81 WILD-TYPE 172 182 101 20
'MUS81 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.004 (Fisher's exact test), Q value = 0.058

Table S22454.  Gene #2143: 'MUS81 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
MUS81 MUTATED 0 0 6
MUS81 WILD-TYPE 87 80 94

Figure S5401.  Get High-res Image Gene #2143: 'MUS81 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'MUS81 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0291 (Fisher's exact test), Q value = 0.17

Table S22455.  Gene #2143: 'MUS81 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
MUS81 MUTATED 0 5 0
MUS81 WILD-TYPE 89 155 138

Figure S5402.  Get High-res Image Gene #2143: 'MUS81 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'MUS81 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.594 (Fisher's exact test), Q value = 0.9

Table S22456.  Gene #2143: 'MUS81 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
MUS81 MUTATED 2 3 0
MUS81 WILD-TYPE 180 130 72
'MUS81 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0137 (Fisher's exact test), Q value = 0.12

Table S22457.  Gene #2143: 'MUS81 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
MUS81 MUTATED 1 5 0 1
MUS81 WILD-TYPE 111 91 92 185

Figure S5403.  Get High-res Image Gene #2143: 'MUS81 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'MUS81 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00559 (Fisher's exact test), Q value = 0.068

Table S22458.  Gene #2143: 'MUS81 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
MUS81 MUTATED 1 0 4 1 0 0 1
MUS81 WILD-TYPE 59 50 45 39 63 125 98

Figure S5404.  Get High-res Image Gene #2143: 'MUS81 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'MUS81 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0134 (Fisher's exact test), Q value = 0.11

Table S22459.  Gene #2143: 'MUS81 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
MUS81 MUTATED 6 0 0 1
MUS81 WILD-TYPE 124 78 68 195

Figure S5405.  Get High-res Image Gene #2143: 'MUS81 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'MUS81 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0287 (Fisher's exact test), Q value = 0.17

Table S22460.  Gene #2143: 'MUS81 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
MUS81 MUTATED 3 1 1 0 1 0 0 1 0
MUS81 WILD-TYPE 37 61 27 80 68 48 43 27 74

Figure S5406.  Get High-res Image Gene #2143: 'MUS81 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'AKT1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.168 (Fisher's exact test), Q value = 0.46

Table S22461.  Gene #2144: 'AKT1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
AKT1 MUTATED 8 2 1 0
AKT1 WILD-TYPE 170 181 100 20
'AKT1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.243 (Fisher's exact test), Q value = 0.57

Table S22462.  Gene #2144: 'AKT1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
AKT1 MUTATED 2 1 6
AKT1 WILD-TYPE 85 79 94
'AKT1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.764 (Fisher's exact test), Q value = 1

Table S22463.  Gene #2144: 'AKT1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
AKT1 MUTATED 3 3 3
AKT1 WILD-TYPE 86 157 135
'AKT1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.45 (Fisher's exact test), Q value = 0.78

Table S22464.  Gene #2144: 'AKT1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
AKT1 MUTATED 3 3 3
AKT1 WILD-TYPE 179 130 69
'AKT1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.156 (Fisher's exact test), Q value = 0.44

Table S22465.  Gene #2144: 'AKT1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
AKT1 MUTATED 3 5 1 2
AKT1 WILD-TYPE 109 91 91 184
'AKT1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0129 (Fisher's exact test), Q value = 0.11

Table S22466.  Gene #2144: 'AKT1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
AKT1 MUTATED 3 1 4 1 0 0 2
AKT1 WILD-TYPE 57 49 45 39 63 125 97

Figure S5407.  Get High-res Image Gene #2144: 'AKT1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'AKT1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.584 (Fisher's exact test), Q value = 0.89

Table S22467.  Gene #2144: 'AKT1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
AKT1 MUTATED 4 3 1 3
AKT1 WILD-TYPE 126 75 67 193
'AKT1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0664 (Fisher's exact test), Q value = 0.28

Table S22468.  Gene #2144: 'AKT1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
AKT1 MUTATED 1 1 1 0 5 1 2 0 0
AKT1 WILD-TYPE 39 61 27 80 64 47 41 28 74
'AKT1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.594 (Fisher's exact test), Q value = 0.9

Table S22469.  Gene #2144: 'AKT1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
AKT1 MUTATED 2 0 1 1
AKT1 WILD-TYPE 31 31 26 18
'AKT1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S22470.  Gene #2144: 'AKT1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
AKT1 MUTATED 2 0 1 1
AKT1 WILD-TYPE 52 10 23 21
'OGFRL1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0127 (Fisher's exact test), Q value = 0.11

Table S22471.  Gene #2145: 'OGFRL1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
OGFRL1 MUTATED 0 0 1 4
OGFRL1 WILD-TYPE 46 58 63 39

Figure S5408.  Get High-res Image Gene #2145: 'OGFRL1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'OGFRL1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.117 (Fisher's exact test), Q value = 0.38

Table S22472.  Gene #2145: 'OGFRL1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
OGFRL1 MUTATED 2 0 3
OGFRL1 WILD-TYPE 49 83 74
'OGFRL1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00426 (Fisher's exact test), Q value = 0.06

Table S22473.  Gene #2145: 'OGFRL1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
OGFRL1 MUTATED 9 0 1 0
OGFRL1 WILD-TYPE 169 183 100 20

Figure S5409.  Get High-res Image Gene #2145: 'OGFRL1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'OGFRL1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.381 (Fisher's exact test), Q value = 0.71

Table S22474.  Gene #2145: 'OGFRL1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
OGFRL1 MUTATED 2 0 3
OGFRL1 WILD-TYPE 85 80 97
'OGFRL1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.713 (Fisher's exact test), Q value = 0.98

Table S22475.  Gene #2145: 'OGFRL1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
OGFRL1 MUTATED 1 5 4
OGFRL1 WILD-TYPE 88 155 134
'OGFRL1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.764 (Fisher's exact test), Q value = 1

Table S22476.  Gene #2145: 'OGFRL1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
OGFRL1 MUTATED 6 3 1
OGFRL1 WILD-TYPE 176 130 71
'OGFRL1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.283 (Fisher's exact test), Q value = 0.61

Table S22477.  Gene #2145: 'OGFRL1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
OGFRL1 MUTATED 0 3 2 5
OGFRL1 WILD-TYPE 112 93 90 181
'OGFRL1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0166 (Fisher's exact test), Q value = 0.13

Table S22478.  Gene #2145: 'OGFRL1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
OGFRL1 MUTATED 1 0 3 2 0 0 4
OGFRL1 WILD-TYPE 59 50 46 38 63 125 95

Figure S5410.  Get High-res Image Gene #2145: 'OGFRL1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'OGFRL1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S22479.  Gene #2145: 'OGFRL1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
OGFRL1 MUTATED 3 1 1 4
OGFRL1 WILD-TYPE 127 77 67 192
'OGFRL1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.316 (Fisher's exact test), Q value = 0.64

Table S22480.  Gene #2145: 'OGFRL1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
OGFRL1 MUTATED 1 3 0 0 3 0 0 0 2
OGFRL1 WILD-TYPE 39 59 28 80 66 48 43 28 72
'VPS72 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.024 (Fisher's exact test), Q value = 0.16

Table S22481.  Gene #2146: 'VPS72 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
VPS72 MUTATED 7 0 1 0
VPS72 WILD-TYPE 171 183 100 20

Figure S5411.  Get High-res Image Gene #2146: 'VPS72 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'VPS72 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.205 (Fisher's exact test), Q value = 0.51

Table S22482.  Gene #2146: 'VPS72 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
VPS72 MUTATED 3 0 4
VPS72 WILD-TYPE 84 80 96
'VPS72 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S22483.  Gene #2146: 'VPS72 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
VPS72 MUTATED 2 3 3
VPS72 WILD-TYPE 87 157 135
'VPS72 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.221 (Fisher's exact test), Q value = 0.53

Table S22484.  Gene #2146: 'VPS72 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
VPS72 MUTATED 2 3 3
VPS72 WILD-TYPE 180 130 69
'VPS72 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0205 (Fisher's exact test), Q value = 0.14

Table S22485.  Gene #2146: 'VPS72 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
VPS72 MUTATED 0 4 3 1
VPS72 WILD-TYPE 112 92 89 185

Figure S5412.  Get High-res Image Gene #2146: 'VPS72 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'VPS72 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00081 (Fisher's exact test), Q value = 0.021

Table S22486.  Gene #2146: 'VPS72 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
VPS72 MUTATED 0 0 5 1 1 0 1
VPS72 WILD-TYPE 60 50 44 39 62 125 98

Figure S5413.  Get High-res Image Gene #2146: 'VPS72 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'VPS72 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.143 (Fisher's exact test), Q value = 0.42

Table S22487.  Gene #2146: 'VPS72 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
VPS72 MUTATED 5 0 0 3
VPS72 WILD-TYPE 125 78 68 193
'VPS72 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.231 (Fisher's exact test), Q value = 0.55

Table S22488.  Gene #2146: 'VPS72 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
VPS72 MUTATED 1 2 0 1 4 0 0 0 0
VPS72 WILD-TYPE 39 60 28 79 65 48 43 28 74
'ALG9 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.536 (Fisher's exact test), Q value = 0.86

Table S22489.  Gene #2147: 'ALG9 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ALG9 MUTATED 3 1 0 0
ALG9 WILD-TYPE 175 182 101 20
'ALG9 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S22490.  Gene #2147: 'ALG9 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ALG9 MUTATED 1 1 1
ALG9 WILD-TYPE 88 159 137
'ALG9 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.423 (Fisher's exact test), Q value = 0.75

Table S22491.  Gene #2147: 'ALG9 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ALG9 MUTATED 2 0 1
ALG9 WILD-TYPE 180 133 71
'ALG9 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.235 (Fisher's exact test), Q value = 0.56

Table S22492.  Gene #2147: 'ALG9 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ALG9 MUTATED 0 0 2 2
ALG9 WILD-TYPE 112 96 90 184
'ALG9 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.295 (Fisher's exact test), Q value = 0.62

Table S22493.  Gene #2147: 'ALG9 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ALG9 MUTATED 0 1 1 0 0 0 2
ALG9 WILD-TYPE 60 49 48 40 63 125 97
'ALG9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.741 (Fisher's exact test), Q value = 1

Table S22494.  Gene #2147: 'ALG9 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ALG9 MUTATED 2 0 0 2
ALG9 WILD-TYPE 128 78 68 194
'ALG9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.735 (Fisher's exact test), Q value = 1

Table S22495.  Gene #2147: 'ALG9 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ALG9 MUTATED 0 1 1 1 1 0 0 0 0
ALG9 WILD-TYPE 40 61 27 79 68 48 43 28 74
'TAX1BP1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0504 (Fisher's exact test), Q value = 0.24

Table S22496.  Gene #2148: 'TAX1BP1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
TAX1BP1 MUTATED 0 0 1 3
TAX1BP1 WILD-TYPE 46 58 63 40
'TAX1BP1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S22497.  Gene #2148: 'TAX1BP1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
TAX1BP1 MUTATED 1 2 1
TAX1BP1 WILD-TYPE 50 81 76
'TAX1BP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00033 (Fisher's exact test), Q value = 0.012

Table S22498.  Gene #2148: 'TAX1BP1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
TAX1BP1 MUTATED 13 1 0 0
TAX1BP1 WILD-TYPE 165 182 101 20

Figure S5414.  Get High-res Image Gene #2148: 'TAX1BP1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'TAX1BP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0381 (Fisher's exact test), Q value = 0.2

Table S22499.  Gene #2148: 'TAX1BP1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
TAX1BP1 MUTATED 3 0 7
TAX1BP1 WILD-TYPE 84 80 93

Figure S5415.  Get High-res Image Gene #2148: 'TAX1BP1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'TAX1BP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.245 (Fisher's exact test), Q value = 0.57

Table S22500.  Gene #2148: 'TAX1BP1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
TAX1BP1 MUTATED 1 4 7
TAX1BP1 WILD-TYPE 88 156 131
'TAX1BP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.743 (Fisher's exact test), Q value = 1

Table S22501.  Gene #2148: 'TAX1BP1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
TAX1BP1 MUTATED 6 5 1
TAX1BP1 WILD-TYPE 176 128 71
'TAX1BP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.216 (Fisher's exact test), Q value = 0.53

Table S22502.  Gene #2148: 'TAX1BP1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
TAX1BP1 MUTATED 1 5 4 4
TAX1BP1 WILD-TYPE 111 91 88 182
'TAX1BP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 3e-05 (Fisher's exact test), Q value = 0.0022

Table S22503.  Gene #2148: 'TAX1BP1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
TAX1BP1 MUTATED 1 1 9 0 0 1 2
TAX1BP1 WILD-TYPE 59 49 40 40 63 124 97

Figure S5416.  Get High-res Image Gene #2148: 'TAX1BP1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'TAX1BP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.142 (Fisher's exact test), Q value = 0.42

Table S22504.  Gene #2148: 'TAX1BP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
TAX1BP1 MUTATED 8 1 1 4
TAX1BP1 WILD-TYPE 122 77 67 192
'TAX1BP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0245 (Fisher's exact test), Q value = 0.16

Table S22505.  Gene #2148: 'TAX1BP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
TAX1BP1 MUTATED 1 3 1 0 7 1 0 0 1
TAX1BP1 WILD-TYPE 39 59 27 80 62 47 43 28 73

Figure S5417.  Get High-res Image Gene #2148: 'TAX1BP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'TAX1BP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0239 (Fisher's exact test), Q value = 0.16

Table S22506.  Gene #2148: 'TAX1BP1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
TAX1BP1 MUTATED 1 0 0 3
TAX1BP1 WILD-TYPE 32 31 27 16

Figure S5418.  Get High-res Image Gene #2148: 'TAX1BP1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'TAX1BP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S22507.  Gene #2148: 'TAX1BP1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
TAX1BP1 MUTATED 2 0 1 1
TAX1BP1 WILD-TYPE 52 10 23 21
'MAGEB2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.231 (Fisher's exact test), Q value = 0.55

Table S22508.  Gene #2149: 'MAGEB2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
MAGEB2 MUTATED 2 1 0 0
MAGEB2 WILD-TYPE 44 57 64 43
'MAGEB2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.458 (Fisher's exact test), Q value = 0.79

Table S22509.  Gene #2149: 'MAGEB2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
MAGEB2 MUTATED 1 2 0
MAGEB2 WILD-TYPE 50 81 77
'MAGEB2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.357 (Fisher's exact test), Q value = 0.69

Table S22510.  Gene #2149: 'MAGEB2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
MAGEB2 MUTATED 7 5 1 1
MAGEB2 WILD-TYPE 171 178 100 19
'MAGEB2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.113 (Fisher's exact test), Q value = 0.37

Table S22511.  Gene #2149: 'MAGEB2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
MAGEB2 MUTATED 7 2 2
MAGEB2 WILD-TYPE 80 78 98
'MAGEB2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.164 (Fisher's exact test), Q value = 0.46

Table S22512.  Gene #2149: 'MAGEB2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
MAGEB2 MUTATED 1 4 8
MAGEB2 WILD-TYPE 88 156 130
'MAGEB2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.527 (Fisher's exact test), Q value = 0.85

Table S22513.  Gene #2149: 'MAGEB2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
MAGEB2 MUTATED 8 4 1
MAGEB2 WILD-TYPE 174 129 71
'MAGEB2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.42 (Fisher's exact test), Q value = 0.75

Table S22514.  Gene #2149: 'MAGEB2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
MAGEB2 MUTATED 3 4 4 3
MAGEB2 WILD-TYPE 109 92 88 183
'MAGEB2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.405 (Fisher's exact test), Q value = 0.73

Table S22515.  Gene #2149: 'MAGEB2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
MAGEB2 MUTATED 2 2 2 1 4 2 1
MAGEB2 WILD-TYPE 58 48 47 39 59 123 98
'MAGEB2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.745 (Fisher's exact test), Q value = 1

Table S22516.  Gene #2149: 'MAGEB2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
MAGEB2 MUTATED 3 3 3 5
MAGEB2 WILD-TYPE 127 75 65 191
'MAGEB2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.79 (Fisher's exact test), Q value = 1

Table S22517.  Gene #2149: 'MAGEB2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
MAGEB2 MUTATED 2 2 1 1 3 2 2 0 1
MAGEB2 WILD-TYPE 38 60 27 79 66 46 41 28 73
'MAGEB2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.644 (Fisher's exact test), Q value = 0.93

Table S22518.  Gene #2149: 'MAGEB2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
MAGEB2 MUTATED 1 2 0 1
MAGEB2 WILD-TYPE 32 29 27 18
'MAGEB2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.318 (Fisher's exact test), Q value = 0.65

Table S22519.  Gene #2149: 'MAGEB2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
MAGEB2 MUTATED 1 0 1 2
MAGEB2 WILD-TYPE 53 10 23 20
'SLCO6A1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0741 (Fisher's exact test), Q value = 0.29

Table S22520.  Gene #2150: 'SLCO6A1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
SLCO6A1 MUTATED 5 1 1 3
SLCO6A1 WILD-TYPE 41 57 63 40
'SLCO6A1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.04 (Fisher's exact test), Q value = 0.21

Table S22521.  Gene #2150: 'SLCO6A1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
SLCO6A1 MUTATED 6 2 2
SLCO6A1 WILD-TYPE 45 81 75

Figure S5419.  Get High-res Image Gene #2150: 'SLCO6A1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'SLCO6A1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0942 (Fisher's exact test), Q value = 0.34

Table S22522.  Gene #2150: 'SLCO6A1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
SLCO6A1 MUTATED 16 9 2 1
SLCO6A1 WILD-TYPE 162 174 99 19
'SLCO6A1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.827 (Fisher's exact test), Q value = 1

Table S22523.  Gene #2150: 'SLCO6A1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
SLCO6A1 MUTATED 5 5 8
SLCO6A1 WILD-TYPE 82 75 92
'SLCO6A1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0252 (Fisher's exact test), Q value = 0.16

Table S22524.  Gene #2150: 'SLCO6A1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
SLCO6A1 MUTATED 1 9 13
SLCO6A1 WILD-TYPE 88 151 125

Figure S5420.  Get High-res Image Gene #2150: 'SLCO6A1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'SLCO6A1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.321 (Fisher's exact test), Q value = 0.65

Table S22525.  Gene #2150: 'SLCO6A1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
SLCO6A1 MUTATED 14 7 2
SLCO6A1 WILD-TYPE 168 126 70
'SLCO6A1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.978 (Fisher's exact test), Q value = 1

Table S22526.  Gene #2150: 'SLCO6A1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
SLCO6A1 MUTATED 6 5 6 11
SLCO6A1 WILD-TYPE 106 91 86 175
'SLCO6A1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.273 (Fisher's exact test), Q value = 0.6

Table S22527.  Gene #2150: 'SLCO6A1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
SLCO6A1 MUTATED 5 4 4 0 3 4 8
SLCO6A1 WILD-TYPE 55 46 45 40 60 121 91
'SLCO6A1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.887 (Fisher's exact test), Q value = 1

Table S22528.  Gene #2150: 'SLCO6A1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
SLCO6A1 MUTATED 6 4 3 13
SLCO6A1 WILD-TYPE 124 74 65 183
'SLCO6A1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.104 (Fisher's exact test), Q value = 0.36

Table S22529.  Gene #2150: 'SLCO6A1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
SLCO6A1 MUTATED 0 4 5 5 6 1 2 1 2
SLCO6A1 WILD-TYPE 40 58 23 75 63 47 41 27 72
'SLCO6A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.901 (Fisher's exact test), Q value = 1

Table S22530.  Gene #2150: 'SLCO6A1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
SLCO6A1 MUTATED 3 2 3 1
SLCO6A1 WILD-TYPE 30 29 24 18
'SLCO6A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S22531.  Gene #2150: 'SLCO6A1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
SLCO6A1 MUTATED 4 1 2 2
SLCO6A1 WILD-TYPE 50 9 22 20
'HIST1H3B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.339 (Fisher's exact test), Q value = 0.67

Table S22532.  Gene #2151: 'HIST1H3B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
HIST1H3B MUTATED 3 0 1 0
HIST1H3B WILD-TYPE 175 183 100 20
'HIST1H3B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.641 (Fisher's exact test), Q value = 0.93

Table S22533.  Gene #2151: 'HIST1H3B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
HIST1H3B MUTATED 0 1 2
HIST1H3B WILD-TYPE 87 79 98
'HIST1H3B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.454 (Fisher's exact test), Q value = 0.78

Table S22534.  Gene #2151: 'HIST1H3B MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
HIST1H3B MUTATED 2 1 1
HIST1H3B WILD-TYPE 87 159 137
'HIST1H3B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S22535.  Gene #2151: 'HIST1H3B MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
HIST1H3B MUTATED 2 1 1
HIST1H3B WILD-TYPE 180 132 71
'HIST1H3B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.92 (Fisher's exact test), Q value = 1

Table S22536.  Gene #2151: 'HIST1H3B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
HIST1H3B MUTATED 1 1 1 1
HIST1H3B WILD-TYPE 111 95 91 185
'HIST1H3B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.132 (Fisher's exact test), Q value = 0.41

Table S22537.  Gene #2151: 'HIST1H3B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
HIST1H3B MUTATED 1 0 2 0 0 0 1
HIST1H3B WILD-TYPE 59 50 47 40 63 125 98
'HIST1H3B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.904 (Fisher's exact test), Q value = 1

Table S22538.  Gene #2151: 'HIST1H3B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
HIST1H3B MUTATED 1 0 1 2
HIST1H3B WILD-TYPE 129 78 67 194
'HIST1H3B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.286 (Fisher's exact test), Q value = 0.61

Table S22539.  Gene #2151: 'HIST1H3B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
HIST1H3B MUTATED 0 1 1 0 2 0 0 0 0
HIST1H3B WILD-TYPE 40 61 27 80 67 48 43 28 74
'TBCE MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.121 (Fisher's exact test), Q value = 0.39

Table S22540.  Gene #2152: 'TBCE MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
TBCE MUTATED 2 0 0 1
TBCE WILD-TYPE 44 58 64 42
'TBCE MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S22541.  Gene #2152: 'TBCE MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
TBCE MUTATED 1 1 1
TBCE WILD-TYPE 50 82 76
'TBCE MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0372 (Fisher's exact test), Q value = 0.2

Table S22542.  Gene #2152: 'TBCE MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
TBCE MUTATED 2 0 0 1
TBCE WILD-TYPE 176 183 101 19

Figure S5421.  Get High-res Image Gene #2152: 'TBCE MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'TBCE MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.374 (Fisher's exact test), Q value = 0.7

Table S22543.  Gene #2152: 'TBCE MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
TBCE MUTATED 0 0 0 3
TBCE WILD-TYPE 112 96 92 183
'TBCE MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.848 (Fisher's exact test), Q value = 1

Table S22544.  Gene #2152: 'TBCE MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
TBCE MUTATED 0 0 0 0 0 1 2
TBCE WILD-TYPE 60 50 49 40 63 124 97
'TBCE MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.39 (Fisher's exact test), Q value = 0.72

Table S22545.  Gene #2152: 'TBCE MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
TBCE MUTATED 0 0 0 3
TBCE WILD-TYPE 130 78 68 193
'TBCE MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.672 (Fisher's exact test), Q value = 0.95

Table S22546.  Gene #2152: 'TBCE MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
TBCE MUTATED 0 0 0 1 2 0 0 0 0
TBCE WILD-TYPE 40 62 28 79 67 48 43 28 74
'GLTPD2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.122 (Fisher's exact test), Q value = 0.39

Table S22547.  Gene #2153: 'GLTPD2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
GLTPD2 MUTATED 4 0 0 0
GLTPD2 WILD-TYPE 174 183 101 20
'GLTPD2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.776 (Fisher's exact test), Q value = 1

Table S22548.  Gene #2153: 'GLTPD2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
GLTPD2 MUTATED 1 0 2
GLTPD2 WILD-TYPE 86 80 98
'GLTPD2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.249 (Fisher's exact test), Q value = 0.58

Table S22549.  Gene #2153: 'GLTPD2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
GLTPD2 MUTATED 0 3 0
GLTPD2 WILD-TYPE 89 157 138
'GLTPD2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0821 (Fisher's exact test), Q value = 0.31

Table S22550.  Gene #2153: 'GLTPD2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
GLTPD2 MUTATED 0 3 0
GLTPD2 WILD-TYPE 182 130 72
'GLTPD2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.337 (Fisher's exact test), Q value = 0.66

Table S22551.  Gene #2153: 'GLTPD2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
GLTPD2 MUTATED 0 2 0 2
GLTPD2 WILD-TYPE 112 94 92 184
'GLTPD2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.298 (Fisher's exact test), Q value = 0.63

Table S22552.  Gene #2153: 'GLTPD2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
GLTPD2 MUTATED 0 1 1 0 0 0 2
GLTPD2 WILD-TYPE 60 49 48 40 63 125 97
'GLTPD2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.744 (Fisher's exact test), Q value = 1

Table S22553.  Gene #2153: 'GLTPD2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
GLTPD2 MUTATED 2 0 0 2
GLTPD2 WILD-TYPE 128 78 68 194
'GLTPD2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.836 (Fisher's exact test), Q value = 1

Table S22554.  Gene #2153: 'GLTPD2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
GLTPD2 MUTATED 0 0 1 1 1 0 0 0 1
GLTPD2 WILD-TYPE 40 62 27 79 68 48 43 28 73
'KIAA0922 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00091 (Fisher's exact test), Q value = 0.023

Table S22555.  Gene #2154: 'KIAA0922 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
KIAA0922 MUTATED 5 0 0 4
KIAA0922 WILD-TYPE 41 58 64 39

Figure S5422.  Get High-res Image Gene #2154: 'KIAA0922 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'KIAA0922 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.097 (Fisher's exact test), Q value = 0.34

Table S22556.  Gene #2154: 'KIAA0922 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
KIAA0922 MUTATED 5 2 2
KIAA0922 WILD-TYPE 46 81 75
'KIAA0922 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00763 (Fisher's exact test), Q value = 0.082

Table S22557.  Gene #2154: 'KIAA0922 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
KIAA0922 MUTATED 15 3 2 0
KIAA0922 WILD-TYPE 163 180 99 20

Figure S5423.  Get High-res Image Gene #2154: 'KIAA0922 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'KIAA0922 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.739 (Fisher's exact test), Q value = 1

Table S22558.  Gene #2154: 'KIAA0922 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
KIAA0922 MUTATED 4 2 5
KIAA0922 WILD-TYPE 83 78 95
'KIAA0922 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.39 (Fisher's exact test), Q value = 0.72

Table S22559.  Gene #2154: 'KIAA0922 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
KIAA0922 MUTATED 2 5 8
KIAA0922 WILD-TYPE 87 155 130
'KIAA0922 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S22560.  Gene #2154: 'KIAA0922 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
KIAA0922 MUTATED 7 5 3
KIAA0922 WILD-TYPE 175 128 69
'KIAA0922 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.401 (Fisher's exact test), Q value = 0.73

Table S22561.  Gene #2154: 'KIAA0922 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
KIAA0922 MUTATED 3 6 2 10
KIAA0922 WILD-TYPE 109 90 90 176
'KIAA0922 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0312 (Fisher's exact test), Q value = 0.18

Table S22562.  Gene #2154: 'KIAA0922 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
KIAA0922 MUTATED 1 2 5 1 3 1 8
KIAA0922 WILD-TYPE 59 48 44 39 60 124 91

Figure S5424.  Get High-res Image Gene #2154: 'KIAA0922 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'KIAA0922 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.775 (Fisher's exact test), Q value = 1

Table S22563.  Gene #2154: 'KIAA0922 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
KIAA0922 MUTATED 5 2 3 11
KIAA0922 WILD-TYPE 125 76 65 185
'KIAA0922 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0067 (Fisher's exact test), Q value = 0.075

Table S22564.  Gene #2154: 'KIAA0922 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
KIAA0922 MUTATED 1 4 2 1 9 0 3 0 1
KIAA0922 WILD-TYPE 39 58 26 79 60 48 40 28 73

Figure S5425.  Get High-res Image Gene #2154: 'KIAA0922 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'KIAA0922 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S22565.  Gene #2154: 'KIAA0922 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
KIAA0922 MUTATED 1 1 1 1
KIAA0922 WILD-TYPE 32 30 26 18
'KIAA0922 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.15 (Fisher's exact test), Q value = 0.43

Table S22566.  Gene #2154: 'KIAA0922 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
KIAA0922 MUTATED 1 1 0 2
KIAA0922 WILD-TYPE 53 9 24 20
'STK3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.125 (Fisher's exact test), Q value = 0.39

Table S22567.  Gene #2155: 'STK3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
STK3 MUTATED 7 1 1 0
STK3 WILD-TYPE 171 182 100 20
'STK3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.254 (Fisher's exact test), Q value = 0.58

Table S22568.  Gene #2155: 'STK3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
STK3 MUTATED 2 0 4
STK3 WILD-TYPE 85 80 96
'STK3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.696 (Fisher's exact test), Q value = 0.97

Table S22569.  Gene #2155: 'STK3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
STK3 MUTATED 1 5 3
STK3 WILD-TYPE 88 155 135
'STK3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.213 (Fisher's exact test), Q value = 0.52

Table S22570.  Gene #2155: 'STK3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
STK3 MUTATED 2 4 3
STK3 WILD-TYPE 180 129 69
'STK3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.318 (Fisher's exact test), Q value = 0.65

Table S22571.  Gene #2155: 'STK3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
STK3 MUTATED 0 3 2 4
STK3 WILD-TYPE 112 93 90 182
'STK3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0134 (Fisher's exact test), Q value = 0.11

Table S22572.  Gene #2155: 'STK3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
STK3 MUTATED 0 3 2 0 0 0 4
STK3 WILD-TYPE 60 47 47 40 63 125 95

Figure S5426.  Get High-res Image Gene #2155: 'STK3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'STK3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.733 (Fisher's exact test), Q value = 1

Table S22573.  Gene #2155: 'STK3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
STK3 MUTATED 3 1 0 5
STK3 WILD-TYPE 127 77 68 191
'STK3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.471 (Fisher's exact test), Q value = 0.8

Table S22574.  Gene #2155: 'STK3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
STK3 MUTATED 0 1 1 2 4 0 0 0 1
STK3 WILD-TYPE 40 61 27 78 65 48 43 28 73
'SLC35A1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.662 (Fisher's exact test), Q value = 0.95

Table S22575.  Gene #2156: 'SLC35A1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
SLC35A1 MUTATED 2 1 0 0
SLC35A1 WILD-TYPE 176 182 101 20
'SLC35A1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.519 (Fisher's exact test), Q value = 0.84

Table S22576.  Gene #2156: 'SLC35A1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
SLC35A1 MUTATED 0 0 1 2
SLC35A1 WILD-TYPE 112 96 91 184
'SLC35A1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.58 (Fisher's exact test), Q value = 0.88

Table S22577.  Gene #2156: 'SLC35A1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
SLC35A1 MUTATED 1 0 0 0 1 0 1
SLC35A1 WILD-TYPE 59 50 49 40 62 125 98
'SLC35A1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.549 (Fisher's exact test), Q value = 0.87

Table S22578.  Gene #2156: 'SLC35A1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
SLC35A1 MUTATED 0 1 0 2
SLC35A1 WILD-TYPE 130 77 68 194
'SLC35A1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.377 (Fisher's exact test), Q value = 0.71

Table S22579.  Gene #2156: 'SLC35A1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
SLC35A1 MUTATED 0 1 0 0 1 0 0 1 0
SLC35A1 WILD-TYPE 40 61 28 80 68 48 43 27 74
'GLRA3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00142 (Fisher's exact test), Q value = 0.031

Table S22580.  Gene #2157: 'GLRA3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
GLRA3 MUTATED 0 0 0 4
GLRA3 WILD-TYPE 46 58 64 39

Figure S5427.  Get High-res Image Gene #2157: 'GLRA3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'GLRA3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.555 (Fisher's exact test), Q value = 0.87

Table S22581.  Gene #2157: 'GLRA3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
GLRA3 MUTATED 2 1 1
GLRA3 WILD-TYPE 49 82 76
'GLRA3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0634 (Fisher's exact test), Q value = 0.27

Table S22582.  Gene #2157: 'GLRA3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
GLRA3 MUTATED 8 1 1 0
GLRA3 WILD-TYPE 170 182 100 20
'GLRA3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.63 (Fisher's exact test), Q value = 0.93

Table S22583.  Gene #2157: 'GLRA3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
GLRA3 MUTATED 1 1 3
GLRA3 WILD-TYPE 86 79 97
'GLRA3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.491 (Fisher's exact test), Q value = 0.82

Table S22584.  Gene #2157: 'GLRA3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
GLRA3 MUTATED 3 2 2
GLRA3 WILD-TYPE 86 158 136
'GLRA3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.773 (Fisher's exact test), Q value = 1

Table S22585.  Gene #2157: 'GLRA3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
GLRA3 MUTATED 3 2 2
GLRA3 WILD-TYPE 179 131 70
'GLRA3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.596 (Fisher's exact test), Q value = 0.9

Table S22586.  Gene #2157: 'GLRA3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
GLRA3 MUTATED 1 3 1 5
GLRA3 WILD-TYPE 111 93 91 181
'GLRA3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0235 (Fisher's exact test), Q value = 0.16

Table S22587.  Gene #2157: 'GLRA3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
GLRA3 MUTATED 0 0 2 2 1 0 5
GLRA3 WILD-TYPE 60 50 47 38 62 125 94

Figure S5428.  Get High-res Image Gene #2157: 'GLRA3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'GLRA3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.968 (Fisher's exact test), Q value = 1

Table S22588.  Gene #2157: 'GLRA3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
GLRA3 MUTATED 3 1 1 5
GLRA3 WILD-TYPE 127 77 67 191
'GLRA3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.162 (Fisher's exact test), Q value = 0.45

Table S22589.  Gene #2157: 'GLRA3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
GLRA3 MUTATED 2 1 2 0 3 0 1 0 1
GLRA3 WILD-TYPE 38 61 26 80 66 48 42 28 73
'FKBP5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.105 (Fisher's exact test), Q value = 0.36

Table S22590.  Gene #2158: 'FKBP5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
FKBP5 MUTATED 6 1 0 0
FKBP5 WILD-TYPE 172 182 101 20
'FKBP5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S22591.  Gene #2158: 'FKBP5 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
FKBP5 MUTATED 2 1 2
FKBP5 WILD-TYPE 85 79 98
'FKBP5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.239 (Fisher's exact test), Q value = 0.56

Table S22592.  Gene #2158: 'FKBP5 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
FKBP5 MUTATED 0 2 4
FKBP5 WILD-TYPE 89 158 134
'FKBP5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.579 (Fisher's exact test), Q value = 0.88

Table S22593.  Gene #2158: 'FKBP5 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
FKBP5 MUTATED 3 3 0
FKBP5 WILD-TYPE 179 130 72
'FKBP5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.609 (Fisher's exact test), Q value = 0.91

Table S22594.  Gene #2158: 'FKBP5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
FKBP5 MUTATED 1 3 1 2
FKBP5 WILD-TYPE 111 93 91 184
'FKBP5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.046 (Fisher's exact test), Q value = 0.23

Table S22595.  Gene #2158: 'FKBP5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
FKBP5 MUTATED 1 0 3 0 2 0 1
FKBP5 WILD-TYPE 59 50 46 40 61 125 98

Figure S5429.  Get High-res Image Gene #2158: 'FKBP5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'FKBP5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.478 (Fisher's exact test), Q value = 0.81

Table S22596.  Gene #2158: 'FKBP5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
FKBP5 MUTATED 3 2 0 2
FKBP5 WILD-TYPE 127 76 68 194
'FKBP5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.028 (Fisher's exact test), Q value = 0.17

Table S22597.  Gene #2158: 'FKBP5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
FKBP5 MUTATED 0 3 0 0 4 0 0 0 0
FKBP5 WILD-TYPE 40 59 28 80 65 48 43 28 74

Figure S5430.  Get High-res Image Gene #2158: 'FKBP5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'C6ORF15 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0228 (Fisher's exact test), Q value = 0.15

Table S22598.  Gene #2159: 'C6ORF15 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
C6ORF15 MUTATED 6 0 0 0
C6ORF15 WILD-TYPE 172 183 101 20

Figure S5431.  Get High-res Image Gene #2159: 'C6ORF15 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'C6ORF15 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.555 (Fisher's exact test), Q value = 0.87

Table S22599.  Gene #2159: 'C6ORF15 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
C6ORF15 MUTATED 2 0 2
C6ORF15 WILD-TYPE 85 80 98
'C6ORF15 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.14 (Fisher's exact test), Q value = 0.42

Table S22600.  Gene #2159: 'C6ORF15 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
C6ORF15 MUTATED 0 1 4
C6ORF15 WILD-TYPE 89 159 134
'C6ORF15 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.72 (Fisher's exact test), Q value = 0.99

Table S22601.  Gene #2159: 'C6ORF15 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
C6ORF15 MUTATED 3 2 0
C6ORF15 WILD-TYPE 179 131 72
'C6ORF15 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.242 (Fisher's exact test), Q value = 0.57

Table S22602.  Gene #2159: 'C6ORF15 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
C6ORF15 MUTATED 0 3 1 2
C6ORF15 WILD-TYPE 112 93 91 184
'C6ORF15 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0295 (Fisher's exact test), Q value = 0.18

Table S22603.  Gene #2159: 'C6ORF15 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
C6ORF15 MUTATED 0 1 3 0 0 0 2
C6ORF15 WILD-TYPE 60 49 46 40 63 125 97

Figure S5432.  Get High-res Image Gene #2159: 'C6ORF15 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'C6ORF15 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.887 (Fisher's exact test), Q value = 1

Table S22604.  Gene #2159: 'C6ORF15 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
C6ORF15 MUTATED 2 1 0 3
C6ORF15 WILD-TYPE 128 77 68 193
'C6ORF15 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.162 (Fisher's exact test), Q value = 0.46

Table S22605.  Gene #2159: 'C6ORF15 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
C6ORF15 MUTATED 0 2 0 0 1 0 0 2 1
C6ORF15 WILD-TYPE 40 60 28 80 68 48 43 26 73
'ZC3H12C MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0143 (Fisher's exact test), Q value = 0.12

Table S22606.  Gene #2160: 'ZC3H12C MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ZC3H12C MUTATED 5 0 1 3
ZC3H12C WILD-TYPE 41 58 63 40

Figure S5433.  Get High-res Image Gene #2160: 'ZC3H12C MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'ZC3H12C MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0733 (Fisher's exact test), Q value = 0.29

Table S22607.  Gene #2160: 'ZC3H12C MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ZC3H12C MUTATED 5 3 1
ZC3H12C WILD-TYPE 46 80 76
'ZC3H12C MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0177 (Fisher's exact test), Q value = 0.13

Table S22608.  Gene #2160: 'ZC3H12C MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ZC3H12C MUTATED 11 2 1 1
ZC3H12C WILD-TYPE 167 181 100 19

Figure S5434.  Get High-res Image Gene #2160: 'ZC3H12C MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ZC3H12C MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0276 (Fisher's exact test), Q value = 0.17

Table S22609.  Gene #2160: 'ZC3H12C MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ZC3H12C MUTATED 5 0 1
ZC3H12C WILD-TYPE 82 80 99

Figure S5435.  Get High-res Image Gene #2160: 'ZC3H12C MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'ZC3H12C MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0751 (Fisher's exact test), Q value = 0.29

Table S22610.  Gene #2160: 'ZC3H12C MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ZC3H12C MUTATED 0 4 7
ZC3H12C WILD-TYPE 89 156 131
'ZC3H12C MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.784 (Fisher's exact test), Q value = 1

Table S22611.  Gene #2160: 'ZC3H12C MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ZC3H12C MUTATED 5 5 1
ZC3H12C WILD-TYPE 177 128 71
'ZC3H12C MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.084 (Fisher's exact test), Q value = 0.31

Table S22612.  Gene #2160: 'ZC3H12C MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ZC3H12C MUTATED 0 3 3 9
ZC3H12C WILD-TYPE 112 93 89 177
'ZC3H12C MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.348 (Fisher's exact test), Q value = 0.68

Table S22613.  Gene #2160: 'ZC3H12C MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ZC3H12C MUTATED 1 1 3 0 2 2 6
ZC3H12C WILD-TYPE 59 49 46 40 61 123 93
'ZC3H12C MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.117 (Fisher's exact test), Q value = 0.38

Table S22614.  Gene #2160: 'ZC3H12C MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ZC3H12C MUTATED 2 2 0 10
ZC3H12C WILD-TYPE 128 76 68 186
'ZC3H12C MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.371 (Fisher's exact test), Q value = 0.7

Table S22615.  Gene #2160: 'ZC3H12C MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ZC3H12C MUTATED 0 3 1 1 5 0 1 1 2
ZC3H12C WILD-TYPE 40 59 27 79 64 48 42 27 72
'IFI35 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.628 (Fisher's exact test), Q value = 0.92

Table S22616.  Gene #2161: 'IFI35 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
IFI35 MUTATED 1 1 0 1
IFI35 WILD-TYPE 45 57 64 42
'IFI35 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.254 (Fisher's exact test), Q value = 0.58

Table S22617.  Gene #2161: 'IFI35 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
IFI35 MUTATED 2 1 0
IFI35 WILD-TYPE 49 82 77
'IFI35 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.311 (Fisher's exact test), Q value = 0.64

Table S22618.  Gene #2161: 'IFI35 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
IFI35 MUTATED 4 1 3 0
IFI35 WILD-TYPE 174 182 98 20
'IFI35 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0977 (Fisher's exact test), Q value = 0.34

Table S22619.  Gene #2161: 'IFI35 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
IFI35 MUTATED 0 4 2
IFI35 WILD-TYPE 87 76 98
'IFI35 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.476 (Fisher's exact test), Q value = 0.8

Table S22620.  Gene #2161: 'IFI35 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
IFI35 MUTATED 3 2 3
IFI35 WILD-TYPE 86 158 135
'IFI35 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.327 (Fisher's exact test), Q value = 0.66

Table S22621.  Gene #2161: 'IFI35 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
IFI35 MUTATED 6 1 1
IFI35 WILD-TYPE 176 132 71
'IFI35 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.187 (Fisher's exact test), Q value = 0.49

Table S22622.  Gene #2161: 'IFI35 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
IFI35 MUTATED 4 2 0 2
IFI35 WILD-TYPE 108 94 92 184
'IFI35 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.362 (Fisher's exact test), Q value = 0.69

Table S22623.  Gene #2161: 'IFI35 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
IFI35 MUTATED 3 1 1 0 0 1 2
IFI35 WILD-TYPE 57 49 48 40 63 124 97
'IFI35 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.154 (Fisher's exact test), Q value = 0.44

Table S22624.  Gene #2161: 'IFI35 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
IFI35 MUTATED 2 0 3 2
IFI35 WILD-TYPE 128 78 65 194
'IFI35 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.564 (Fisher's exact test), Q value = 0.87

Table S22625.  Gene #2161: 'IFI35 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
IFI35 MUTATED 0 1 1 3 1 0 1 0 0
IFI35 WILD-TYPE 40 61 27 77 68 48 42 28 74
'OR2F2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.756 (Fisher's exact test), Q value = 1

Table S22626.  Gene #2162: 'OR2F2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
OR2F2 MUTATED 4 2 2 0
OR2F2 WILD-TYPE 174 181 99 20
'OR2F2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0278 (Fisher's exact test), Q value = 0.17

Table S22627.  Gene #2162: 'OR2F2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
OR2F2 MUTATED 5 0 1
OR2F2 WILD-TYPE 82 80 99

Figure S5436.  Get High-res Image Gene #2162: 'OR2F2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'OR2F2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.328 (Fisher's exact test), Q value = 0.66

Table S22628.  Gene #2162: 'OR2F2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
OR2F2 MUTATED 1 1 4
OR2F2 WILD-TYPE 88 159 134
'OR2F2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0417 (Fisher's exact test), Q value = 0.22

Table S22629.  Gene #2162: 'OR2F2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
OR2F2 MUTATED 6 0 0
OR2F2 WILD-TYPE 176 133 72

Figure S5437.  Get High-res Image Gene #2162: 'OR2F2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'OR2F2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00167 (Fisher's exact test), Q value = 0.034

Table S22630.  Gene #2162: 'OR2F2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
OR2F2 MUTATED 0 0 6 2
OR2F2 WILD-TYPE 112 96 86 184

Figure S5438.  Get High-res Image Gene #2162: 'OR2F2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'OR2F2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0955 (Fisher's exact test), Q value = 0.34

Table S22631.  Gene #2162: 'OR2F2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
OR2F2 MUTATED 1 0 2 0 3 0 2
OR2F2 WILD-TYPE 59 50 47 40 60 125 97
'OR2F2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0155 (Fisher's exact test), Q value = 0.12

Table S22632.  Gene #2162: 'OR2F2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
OR2F2 MUTATED 1 5 0 2
OR2F2 WILD-TYPE 129 73 68 194

Figure S5439.  Get High-res Image Gene #2162: 'OR2F2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'OR2F2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0306 (Fisher's exact test), Q value = 0.18

Table S22633.  Gene #2162: 'OR2F2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
OR2F2 MUTATED 0 5 0 1 1 0 0 1 0
OR2F2 WILD-TYPE 40 57 28 79 68 48 43 27 74

Figure S5440.  Get High-res Image Gene #2162: 'OR2F2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'OR2F2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0651 (Fisher's exact test), Q value = 0.28

Table S22634.  Gene #2162: 'OR2F2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
OR2F2 MUTATED 0 2 0 2
OR2F2 WILD-TYPE 33 29 27 17
'OR2F2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.868 (Fisher's exact test), Q value = 1

Table S22635.  Gene #2162: 'OR2F2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
OR2F2 MUTATED 3 0 1 0
OR2F2 WILD-TYPE 51 10 23 22
'SLC27A3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0227 (Fisher's exact test), Q value = 0.15

Table S22636.  Gene #2163: 'SLC27A3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
SLC27A3 MUTATED 6 0 0 0
SLC27A3 WILD-TYPE 172 183 101 20

Figure S5441.  Get High-res Image Gene #2163: 'SLC27A3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'SLC27A3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0124 (Fisher's exact test), Q value = 0.11

Table S22637.  Gene #2163: 'SLC27A3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
SLC27A3 MUTATED 0 0 5
SLC27A3 WILD-TYPE 87 80 95

Figure S5442.  Get High-res Image Gene #2163: 'SLC27A3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'SLC27A3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.618 (Fisher's exact test), Q value = 0.92

Table S22638.  Gene #2163: 'SLC27A3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
SLC27A3 MUTATED 1 2 4
SLC27A3 WILD-TYPE 88 158 134
'SLC27A3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.682 (Fisher's exact test), Q value = 0.96

Table S22639.  Gene #2163: 'SLC27A3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
SLC27A3 MUTATED 4 3 0
SLC27A3 WILD-TYPE 178 130 72
'SLC27A3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.194 (Fisher's exact test), Q value = 0.5

Table S22640.  Gene #2163: 'SLC27A3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
SLC27A3 MUTATED 0 3 2 2
SLC27A3 WILD-TYPE 112 93 90 184
'SLC27A3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00803 (Fisher's exact test), Q value = 0.084

Table S22641.  Gene #2163: 'SLC27A3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
SLC27A3 MUTATED 1 1 4 0 0 0 1
SLC27A3 WILD-TYPE 59 49 45 40 63 125 98

Figure S5443.  Get High-res Image Gene #2163: 'SLC27A3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'SLC27A3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.499 (Fisher's exact test), Q value = 0.83

Table S22642.  Gene #2163: 'SLC27A3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
SLC27A3 MUTATED 3 0 0 4
SLC27A3 WILD-TYPE 127 78 68 192
'SLC27A3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0353 (Fisher's exact test), Q value = 0.19

Table S22643.  Gene #2163: 'SLC27A3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
SLC27A3 MUTATED 0 0 0 1 5 0 1 0 0
SLC27A3 WILD-TYPE 40 62 28 79 64 48 42 28 74

Figure S5444.  Get High-res Image Gene #2163: 'SLC27A3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'SLC27A3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00425 (Fisher's exact test), Q value = 0.06

Table S22644.  Gene #2163: 'SLC27A3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
SLC27A3 MUTATED 0 0 0 3
SLC27A3 WILD-TYPE 33 31 27 16

Figure S5445.  Get High-res Image Gene #2163: 'SLC27A3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'SLC27A3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S22645.  Gene #2163: 'SLC27A3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
SLC27A3 MUTATED 2 0 1 0
SLC27A3 WILD-TYPE 52 10 23 22
'C6ORF70 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0646 (Fisher's exact test), Q value = 0.28

Table S22646.  Gene #2164: 'C6ORF70 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
C6ORF70 MUTATED 1 0 0 2
C6ORF70 WILD-TYPE 45 58 64 41
'C6ORF70 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.461 (Fisher's exact test), Q value = 0.79

Table S22647.  Gene #2164: 'C6ORF70 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
C6ORF70 MUTATED 1 2 0
C6ORF70 WILD-TYPE 50 81 77
'C6ORF70 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0239 (Fisher's exact test), Q value = 0.16

Table S22648.  Gene #2164: 'C6ORF70 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
C6ORF70 MUTATED 11 2 1 0
C6ORF70 WILD-TYPE 167 181 100 20

Figure S5446.  Get High-res Image Gene #2164: 'C6ORF70 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'C6ORF70 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.25 (Fisher's exact test), Q value = 0.58

Table S22649.  Gene #2164: 'C6ORF70 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
C6ORF70 MUTATED 2 2 7
C6ORF70 WILD-TYPE 85 78 93
'C6ORF70 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.749 (Fisher's exact test), Q value = 1

Table S22650.  Gene #2164: 'C6ORF70 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
C6ORF70 MUTATED 3 6 3
C6ORF70 WILD-TYPE 86 154 135
'C6ORF70 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.925 (Fisher's exact test), Q value = 1

Table S22651.  Gene #2164: 'C6ORF70 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
C6ORF70 MUTATED 5 5 2
C6ORF70 WILD-TYPE 177 128 70
'C6ORF70 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.216 (Fisher's exact test), Q value = 0.53

Table S22652.  Gene #2164: 'C6ORF70 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
C6ORF70 MUTATED 2 6 1 5
C6ORF70 WILD-TYPE 110 90 91 181
'C6ORF70 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.225 (Fisher's exact test), Q value = 0.54

Table S22653.  Gene #2164: 'C6ORF70 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
C6ORF70 MUTATED 2 2 4 1 0 2 3
C6ORF70 WILD-TYPE 58 48 45 39 63 123 96
'C6ORF70 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.674 (Fisher's exact test), Q value = 0.96

Table S22654.  Gene #2164: 'C6ORF70 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
C6ORF70 MUTATED 6 2 1 5
C6ORF70 WILD-TYPE 124 76 67 191
'C6ORF70 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.861 (Fisher's exact test), Q value = 1

Table S22655.  Gene #2164: 'C6ORF70 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
C6ORF70 MUTATED 2 2 1 2 3 0 2 0 2
C6ORF70 WILD-TYPE 38 60 27 78 66 48 41 28 72
'C6ORF70 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.781 (Fisher's exact test), Q value = 1

Table S22656.  Gene #2164: 'C6ORF70 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
C6ORF70 MUTATED 1 0 1 1
C6ORF70 WILD-TYPE 32 31 26 18
'C6ORF70 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.694 (Fisher's exact test), Q value = 0.97

Table S22657.  Gene #2164: 'C6ORF70 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
C6ORF70 MUTATED 1 0 1 1
C6ORF70 WILD-TYPE 53 10 23 21
'SFI1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0037 (Fisher's exact test), Q value = 0.055

Table S22658.  Gene #2165: 'SFI1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
SFI1 MUTATED 3 0 0 4
SFI1 WILD-TYPE 43 58 64 39

Figure S5447.  Get High-res Image Gene #2165: 'SFI1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'SFI1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.105 (Fisher's exact test), Q value = 0.36

Table S22659.  Gene #2165: 'SFI1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
SFI1 MUTATED 4 1 2
SFI1 WILD-TYPE 47 82 75
'SFI1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00022 (Fisher's exact test), Q value = 0.0088

Table S22660.  Gene #2165: 'SFI1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
SFI1 MUTATED 12 0 0 0
SFI1 WILD-TYPE 166 183 101 20

Figure S5448.  Get High-res Image Gene #2165: 'SFI1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'SFI1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.328 (Fisher's exact test), Q value = 0.66

Table S22661.  Gene #2165: 'SFI1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
SFI1 MUTATED 3 0 2
SFI1 WILD-TYPE 84 80 98
'SFI1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.734 (Fisher's exact test), Q value = 1

Table S22662.  Gene #2165: 'SFI1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
SFI1 MUTATED 1 3 4
SFI1 WILD-TYPE 88 157 134
'SFI1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S22663.  Gene #2165: 'SFI1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
SFI1 MUTATED 4 3 1
SFI1 WILD-TYPE 178 130 71
'SFI1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.067 (Fisher's exact test), Q value = 0.28

Table S22664.  Gene #2165: 'SFI1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
SFI1 MUTATED 0 1 4 7
SFI1 WILD-TYPE 112 95 88 179
'SFI1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00048 (Fisher's exact test), Q value = 0.015

Table S22665.  Gene #2165: 'SFI1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
SFI1 MUTATED 1 0 5 0 0 0 6
SFI1 WILD-TYPE 59 50 44 40 63 125 93

Figure S5449.  Get High-res Image Gene #2165: 'SFI1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'SFI1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.376 (Fisher's exact test), Q value = 0.71

Table S22666.  Gene #2165: 'SFI1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
SFI1 MUTATED 2 3 0 6
SFI1 WILD-TYPE 128 75 68 190
'SFI1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00653 (Fisher's exact test), Q value = 0.074

Table S22667.  Gene #2165: 'SFI1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
SFI1 MUTATED 0 4 2 0 4 0 0 1 0
SFI1 WILD-TYPE 40 58 26 80 65 48 43 27 74

Figure S5450.  Get High-res Image Gene #2165: 'SFI1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'SFI1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00429 (Fisher's exact test), Q value = 0.06

Table S22668.  Gene #2165: 'SFI1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
SFI1 MUTATED 0 0 0 3
SFI1 WILD-TYPE 33 31 27 16

Figure S5451.  Get High-res Image Gene #2165: 'SFI1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'SFI1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S22669.  Gene #2165: 'SFI1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
SFI1 MUTATED 2 0 1 0
SFI1 WILD-TYPE 52 10 23 22
'ELANE MUTATION STATUS' versus 'CN_CNMF'

P value = 0.105 (Fisher's exact test), Q value = 0.36

Table S22670.  Gene #2166: 'ELANE MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ELANE MUTATED 6 1 0 0
ELANE WILD-TYPE 172 182 101 20
'ELANE MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.292 (Fisher's exact test), Q value = 0.62

Table S22671.  Gene #2166: 'ELANE MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ELANE MUTATED 3 0 3
ELANE WILD-TYPE 84 80 97
'ELANE MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.507 (Fisher's exact test), Q value = 0.83

Table S22672.  Gene #2166: 'ELANE MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ELANE MUTATED 0 3 3
ELANE WILD-TYPE 89 157 135
'ELANE MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.579 (Fisher's exact test), Q value = 0.88

Table S22673.  Gene #2166: 'ELANE MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ELANE MUTATED 3 3 0
ELANE WILD-TYPE 179 130 72
'ELANE MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0326 (Fisher's exact test), Q value = 0.18

Table S22674.  Gene #2166: 'ELANE MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ELANE MUTATED 0 4 2 1
ELANE WILD-TYPE 112 92 90 185

Figure S5452.  Get High-res Image Gene #2166: 'ELANE MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'ELANE MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0242 (Fisher's exact test), Q value = 0.16

Table S22675.  Gene #2166: 'ELANE MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ELANE MUTATED 0 2 3 0 1 0 1
ELANE WILD-TYPE 60 48 46 40 62 125 98

Figure S5453.  Get High-res Image Gene #2166: 'ELANE MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ELANE MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.384 (Fisher's exact test), Q value = 0.71

Table S22676.  Gene #2166: 'ELANE MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ELANE MUTATED 4 1 0 2
ELANE WILD-TYPE 126 77 68 194
'ELANE MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0834 (Fisher's exact test), Q value = 0.31

Table S22677.  Gene #2166: 'ELANE MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ELANE MUTATED 0 3 2 0 1 0 0 0 1
ELANE WILD-TYPE 40 59 26 80 68 48 43 28 73
'QSER1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.032 (Fisher's exact test), Q value = 0.18

Table S22678.  Gene #2167: 'QSER1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
QSER1 MUTATED 3 0 0 1
QSER1 WILD-TYPE 43 58 64 42

Figure S5454.  Get High-res Image Gene #2167: 'QSER1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'QSER1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.553 (Fisher's exact test), Q value = 0.87

Table S22679.  Gene #2167: 'QSER1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
QSER1 MUTATED 2 1 1
QSER1 WILD-TYPE 49 82 76
'QSER1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0119 (Fisher's exact test), Q value = 0.11

Table S22680.  Gene #2167: 'QSER1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
QSER1 MUTATED 13 2 2 0
QSER1 WILD-TYPE 165 181 99 20

Figure S5455.  Get High-res Image Gene #2167: 'QSER1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'QSER1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0925 (Fisher's exact test), Q value = 0.33

Table S22681.  Gene #2167: 'QSER1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
QSER1 MUTATED 8 2 3
QSER1 WILD-TYPE 79 78 97
'QSER1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.107 (Fisher's exact test), Q value = 0.36

Table S22682.  Gene #2167: 'QSER1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
QSER1 MUTATED 1 4 9
QSER1 WILD-TYPE 88 156 129
'QSER1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.559 (Fisher's exact test), Q value = 0.87

Table S22683.  Gene #2167: 'QSER1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
QSER1 MUTATED 7 6 1
QSER1 WILD-TYPE 175 127 71
'QSER1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.367 (Fisher's exact test), Q value = 0.7

Table S22684.  Gene #2167: 'QSER1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
QSER1 MUTATED 4 2 6 5
QSER1 WILD-TYPE 108 94 86 181
'QSER1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0671 (Fisher's exact test), Q value = 0.28

Table S22685.  Gene #2167: 'QSER1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
QSER1 MUTATED 4 1 5 1 2 1 3
QSER1 WILD-TYPE 56 49 44 39 61 124 96
'QSER1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.725 (Fisher's exact test), Q value = 0.99

Table S22686.  Gene #2167: 'QSER1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
QSER1 MUTATED 3 4 2 8
QSER1 WILD-TYPE 127 74 66 188
'QSER1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.492 (Fisher's exact test), Q value = 0.82

Table S22687.  Gene #2167: 'QSER1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
QSER1 MUTATED 1 5 0 3 3 0 1 2 2
QSER1 WILD-TYPE 39 57 28 77 66 48 42 26 72
'QSER1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.782 (Fisher's exact test), Q value = 1

Table S22688.  Gene #2167: 'QSER1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
QSER1 MUTATED 1 0 1 1
QSER1 WILD-TYPE 32 31 26 18
'QSER1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S22689.  Gene #2167: 'QSER1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
QSER1 MUTATED 2 0 1 0
QSER1 WILD-TYPE 52 10 23 22
'DAGLB MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.119 (Fisher's exact test), Q value = 0.38

Table S22690.  Gene #2168: 'DAGLB MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
DAGLB MUTATED 2 0 0 1
DAGLB WILD-TYPE 44 58 64 42
'DAGLB MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.347 (Fisher's exact test), Q value = 0.68

Table S22691.  Gene #2168: 'DAGLB MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
DAGLB MUTATED 1 0 2
DAGLB WILD-TYPE 50 83 75
'DAGLB MUTATION STATUS' versus 'CN_CNMF'

P value = 0.526 (Fisher's exact test), Q value = 0.85

Table S22692.  Gene #2168: 'DAGLB MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
DAGLB MUTATED 4 1 1 0
DAGLB WILD-TYPE 174 182 100 20
'DAGLB MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.778 (Fisher's exact test), Q value = 1

Table S22693.  Gene #2168: 'DAGLB MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
DAGLB MUTATED 1 0 2
DAGLB WILD-TYPE 86 80 98
'DAGLB MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.634 (Fisher's exact test), Q value = 0.93

Table S22694.  Gene #2168: 'DAGLB MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
DAGLB MUTATED 0 3 2
DAGLB WILD-TYPE 89 157 136
'DAGLB MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.341 (Fisher's exact test), Q value = 0.67

Table S22695.  Gene #2168: 'DAGLB MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
DAGLB MUTATED 1 3 1
DAGLB WILD-TYPE 181 130 71
'DAGLB MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.458 (Fisher's exact test), Q value = 0.78

Table S22696.  Gene #2168: 'DAGLB MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
DAGLB MUTATED 0 1 2 3
DAGLB WILD-TYPE 112 95 90 183
'DAGLB MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.5 (Fisher's exact test), Q value = 0.83

Table S22697.  Gene #2168: 'DAGLB MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
DAGLB MUTATED 1 1 1 0 1 0 2
DAGLB WILD-TYPE 59 49 48 40 62 125 97
'DAGLB MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.604 (Fisher's exact test), Q value = 0.91

Table S22698.  Gene #2168: 'DAGLB MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
DAGLB MUTATED 1 2 0 3
DAGLB WILD-TYPE 129 76 68 193
'DAGLB MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.657 (Fisher's exact test), Q value = 0.94

Table S22699.  Gene #2168: 'DAGLB MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
DAGLB MUTATED 1 2 0 1 2 0 0 0 0
DAGLB WILD-TYPE 39 60 28 79 67 48 43 28 74
'CXCL9 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0646 (Fisher's exact test), Q value = 0.28

Table S22700.  Gene #2169: 'CXCL9 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
CXCL9 MUTATED 1 0 0 2
CXCL9 WILD-TYPE 45 58 64 41
'CXCL9 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S22701.  Gene #2169: 'CXCL9 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
CXCL9 MUTATED 1 1 1
CXCL9 WILD-TYPE 50 82 76
'CXCL9 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.106 (Fisher's exact test), Q value = 0.36

Table S22702.  Gene #2169: 'CXCL9 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
CXCL9 MUTATED 6 1 0 0
CXCL9 WILD-TYPE 172 182 101 20
'CXCL9 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.558 (Fisher's exact test), Q value = 0.87

Table S22703.  Gene #2169: 'CXCL9 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
CXCL9 MUTATED 2 0 2
CXCL9 WILD-TYPE 85 80 98
'CXCL9 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.385 (Fisher's exact test), Q value = 0.71

Table S22704.  Gene #2169: 'CXCL9 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
CXCL9 MUTATED 0 4 2
CXCL9 WILD-TYPE 89 156 136
'CXCL9 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.667 (Fisher's exact test), Q value = 0.95

Table S22705.  Gene #2169: 'CXCL9 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
CXCL9 MUTATED 4 2 0
CXCL9 WILD-TYPE 178 131 72
'CXCL9 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.456 (Fisher's exact test), Q value = 0.78

Table S22706.  Gene #2169: 'CXCL9 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
CXCL9 MUTATED 0 2 2 3
CXCL9 WILD-TYPE 112 94 90 183
'CXCL9 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.189 (Fisher's exact test), Q value = 0.49

Table S22707.  Gene #2169: 'CXCL9 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
CXCL9 MUTATED 1 1 3 0 0 1 1
CXCL9 WILD-TYPE 59 49 46 40 63 124 98
'CXCL9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.945 (Fisher's exact test), Q value = 1

Table S22708.  Gene #2169: 'CXCL9 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
CXCL9 MUTATED 1 1 1 4
CXCL9 WILD-TYPE 129 77 67 192
'CXCL9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.724 (Fisher's exact test), Q value = 0.99

Table S22709.  Gene #2169: 'CXCL9 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
CXCL9 MUTATED 1 2 0 1 2 0 1 0 0
CXCL9 WILD-TYPE 39 60 28 79 67 48 42 28 74
'CCDC111 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.192 (Fisher's exact test), Q value = 0.49

Table S22710.  Gene #2170: 'CCDC111 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
CCDC111 MUTATED 0 0 1 2
CCDC111 WILD-TYPE 46 58 63 41
'CCDC111 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.617 (Fisher's exact test), Q value = 0.92

Table S22711.  Gene #2170: 'CCDC111 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
CCDC111 MUTATED 0 1 2
CCDC111 WILD-TYPE 51 82 75
'CCDC111 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.462 (Fisher's exact test), Q value = 0.79

Table S22712.  Gene #2170: 'CCDC111 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
CCDC111 MUTATED 6 2 1 0
CCDC111 WILD-TYPE 172 181 100 20
'CCDC111 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.879 (Fisher's exact test), Q value = 1

Table S22713.  Gene #2170: 'CCDC111 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
CCDC111 MUTATED 2 1 3
CCDC111 WILD-TYPE 85 79 97
'CCDC111 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.195 (Fisher's exact test), Q value = 0.5

Table S22714.  Gene #2170: 'CCDC111 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
CCDC111 MUTATED 0 5 2
CCDC111 WILD-TYPE 89 155 136
'CCDC111 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.119 (Fisher's exact test), Q value = 0.38

Table S22715.  Gene #2170: 'CCDC111 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
CCDC111 MUTATED 1 5 1
CCDC111 WILD-TYPE 181 128 71
'CCDC111 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.584 (Fisher's exact test), Q value = 0.89

Table S22716.  Gene #2170: 'CCDC111 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
CCDC111 MUTATED 2 2 3 2
CCDC111 WILD-TYPE 110 94 89 184
'CCDC111 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.405 (Fisher's exact test), Q value = 0.73

Table S22717.  Gene #2170: 'CCDC111 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
CCDC111 MUTATED 1 2 2 0 2 1 1
CCDC111 WILD-TYPE 59 48 47 40 61 124 98
'CCDC111 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.757 (Fisher's exact test), Q value = 1

Table S22718.  Gene #2170: 'CCDC111 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
CCDC111 MUTATED 3 2 0 4
CCDC111 WILD-TYPE 127 76 68 192
'CCDC111 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0677 (Fisher's exact test), Q value = 0.28

Table S22719.  Gene #2170: 'CCDC111 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
CCDC111 MUTATED 0 2 3 0 2 1 0 0 1
CCDC111 WILD-TYPE 40 60 25 80 67 47 43 28 73
'FER1L6 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00257 (Fisher's exact test), Q value = 0.044

Table S22720.  Gene #2171: 'FER1L6 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
FER1L6 MUTATED 2 0 1 6
FER1L6 WILD-TYPE 44 58 63 37

Figure S5456.  Get High-res Image Gene #2171: 'FER1L6 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'FER1L6 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.374 (Fisher's exact test), Q value = 0.7

Table S22721.  Gene #2171: 'FER1L6 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
FER1L6 MUTATED 4 3 2
FER1L6 WILD-TYPE 47 80 75
'FER1L6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.112 (Fisher's exact test), Q value = 0.37

Table S22722.  Gene #2171: 'FER1L6 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
FER1L6 MUTATED 18 8 5 2
FER1L6 WILD-TYPE 160 175 96 18
'FER1L6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.189 (Fisher's exact test), Q value = 0.49

Table S22723.  Gene #2171: 'FER1L6 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
FER1L6 MUTATED 12 5 7
FER1L6 WILD-TYPE 75 75 93
'FER1L6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0312 (Fisher's exact test), Q value = 0.18

Table S22724.  Gene #2171: 'FER1L6 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
FER1L6 MUTATED 6 6 16
FER1L6 WILD-TYPE 83 154 122

Figure S5457.  Get High-res Image Gene #2171: 'FER1L6 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'FER1L6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.275 (Fisher's exact test), Q value = 0.6

Table S22725.  Gene #2171: 'FER1L6 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
FER1L6 MUTATED 17 6 5
FER1L6 WILD-TYPE 165 127 67
'FER1L6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.532 (Fisher's exact test), Q value = 0.85

Table S22726.  Gene #2171: 'FER1L6 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
FER1L6 MUTATED 9 7 8 9
FER1L6 WILD-TYPE 103 89 84 177
'FER1L6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0895 (Fisher's exact test), Q value = 0.33

Table S22727.  Gene #2171: 'FER1L6 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
FER1L6 MUTATED 5 5 7 3 5 3 5
FER1L6 WILD-TYPE 55 45 42 37 58 122 94
'FER1L6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.728 (Fisher's exact test), Q value = 0.99

Table S22728.  Gene #2171: 'FER1L6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
FER1L6 MUTATED 9 7 5 11
FER1L6 WILD-TYPE 121 71 63 185
'FER1L6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0393 (Fisher's exact test), Q value = 0.21

Table S22729.  Gene #2171: 'FER1L6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
FER1L6 MUTATED 6 5 2 5 8 0 4 0 2
FER1L6 WILD-TYPE 34 57 26 75 61 48 39 28 72

Figure S5458.  Get High-res Image Gene #2171: 'FER1L6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'FER1L6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.682 (Fisher's exact test), Q value = 0.96

Table S22730.  Gene #2171: 'FER1L6 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
FER1L6 MUTATED 3 1 3 2
FER1L6 WILD-TYPE 30 30 24 17
'FER1L6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.834 (Fisher's exact test), Q value = 1

Table S22731.  Gene #2171: 'FER1L6 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
FER1L6 MUTATED 6 0 2 1
FER1L6 WILD-TYPE 48 10 22 21
'NUP107 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0773 (Fisher's exact test), Q value = 0.3

Table S22732.  Gene #2172: 'NUP107 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
NUP107 MUTATED 4 0 2 3
NUP107 WILD-TYPE 42 58 62 40
'NUP107 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.34 (Fisher's exact test), Q value = 0.67

Table S22733.  Gene #2172: 'NUP107 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
NUP107 MUTATED 4 2 3
NUP107 WILD-TYPE 47 81 74
'NUP107 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0151 (Fisher's exact test), Q value = 0.12

Table S22734.  Gene #2172: 'NUP107 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
NUP107 MUTATED 10 2 0 0
NUP107 WILD-TYPE 168 181 101 20

Figure S5459.  Get High-res Image Gene #2172: 'NUP107 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'NUP107 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S22735.  Gene #2172: 'NUP107 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
NUP107 MUTATED 1 1 1
NUP107 WILD-TYPE 86 79 99
'NUP107 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S22736.  Gene #2172: 'NUP107 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
NUP107 MUTATED 2 4 3
NUP107 WILD-TYPE 87 156 135
'NUP107 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.405 (Fisher's exact test), Q value = 0.73

Table S22737.  Gene #2172: 'NUP107 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
NUP107 MUTATED 5 4 0
NUP107 WILD-TYPE 177 129 72
'NUP107 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.169 (Fisher's exact test), Q value = 0.46

Table S22738.  Gene #2172: 'NUP107 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
NUP107 MUTATED 1 1 2 9
NUP107 WILD-TYPE 111 95 90 177
'NUP107 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.286 (Fisher's exact test), Q value = 0.61

Table S22739.  Gene #2172: 'NUP107 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
NUP107 MUTATED 2 0 2 0 1 2 6
NUP107 WILD-TYPE 58 50 47 40 62 123 93
'NUP107 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.091 (Fisher's exact test), Q value = 0.33

Table S22740.  Gene #2172: 'NUP107 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
NUP107 MUTATED 2 1 0 10
NUP107 WILD-TYPE 128 77 68 186
'NUP107 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0299 (Fisher's exact test), Q value = 0.18

Table S22741.  Gene #2172: 'NUP107 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
NUP107 MUTATED 0 1 1 4 6 0 0 1 0
NUP107 WILD-TYPE 40 61 27 76 63 48 43 27 74

Figure S5460.  Get High-res Image Gene #2172: 'NUP107 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'HIP1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.122 (Fisher's exact test), Q value = 0.39

Table S22742.  Gene #2173: 'HIP1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
HIP1 MUTATED 1 1 0 3
HIP1 WILD-TYPE 45 57 64 40
'HIP1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.737 (Fisher's exact test), Q value = 1

Table S22743.  Gene #2173: 'HIP1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
HIP1 MUTATED 2 2 1
HIP1 WILD-TYPE 49 81 76
'HIP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.267 (Fisher's exact test), Q value = 0.59

Table S22744.  Gene #2173: 'HIP1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
HIP1 MUTATED 9 3 2 0
HIP1 WILD-TYPE 169 180 99 20
'HIP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.914 (Fisher's exact test), Q value = 1

Table S22745.  Gene #2173: 'HIP1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
HIP1 MUTATED 3 2 4
HIP1 WILD-TYPE 84 78 96
'HIP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.588 (Fisher's exact test), Q value = 0.89

Table S22746.  Gene #2173: 'HIP1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
HIP1 MUTATED 3 7 3
HIP1 WILD-TYPE 86 153 135
'HIP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.869 (Fisher's exact test), Q value = 1

Table S22747.  Gene #2173: 'HIP1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
HIP1 MUTATED 6 4 3
HIP1 WILD-TYPE 176 129 69
'HIP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.6 (Fisher's exact test), Q value = 0.9

Table S22748.  Gene #2173: 'HIP1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
HIP1 MUTATED 4 4 1 5
HIP1 WILD-TYPE 108 92 91 181
'HIP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.352 (Fisher's exact test), Q value = 0.68

Table S22749.  Gene #2173: 'HIP1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
HIP1 MUTATED 3 2 2 0 3 1 3
HIP1 WILD-TYPE 57 48 47 40 60 124 96
'HIP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.631 (Fisher's exact test), Q value = 0.93

Table S22750.  Gene #2173: 'HIP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
HIP1 MUTATED 5 3 1 4
HIP1 WILD-TYPE 125 75 67 192
'HIP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0149 (Fisher's exact test), Q value = 0.12

Table S22751.  Gene #2173: 'HIP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
HIP1 MUTATED 3 3 3 1 3 0 0 0 0
HIP1 WILD-TYPE 37 59 25 79 66 48 43 28 74

Figure S5461.  Get High-res Image Gene #2173: 'HIP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'HIP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.644 (Fisher's exact test), Q value = 0.93

Table S22752.  Gene #2173: 'HIP1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
HIP1 MUTATED 1 2 0 1
HIP1 WILD-TYPE 32 29 27 18
'HIP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.604 (Fisher's exact test), Q value = 0.91

Table S22753.  Gene #2173: 'HIP1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
HIP1 MUTATED 2 1 1 0
HIP1 WILD-TYPE 52 9 23 22
'AP3B1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0607 (Fisher's exact test), Q value = 0.27

Table S22754.  Gene #2174: 'AP3B1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
AP3B1 MUTATED 3 1 0 3
AP3B1 WILD-TYPE 43 57 64 40
'AP3B1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.305 (Fisher's exact test), Q value = 0.64

Table S22755.  Gene #2174: 'AP3B1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
AP3B1 MUTATED 3 1 3
AP3B1 WILD-TYPE 48 82 74
'AP3B1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0816 (Fisher's exact test), Q value = 0.31

Table S22756.  Gene #2174: 'AP3B1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
AP3B1 MUTATED 9 2 1 0
AP3B1 WILD-TYPE 169 181 100 20
'AP3B1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.328 (Fisher's exact test), Q value = 0.66

Table S22757.  Gene #2174: 'AP3B1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
AP3B1 MUTATED 3 0 2
AP3B1 WILD-TYPE 84 80 98
'AP3B1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S22758.  Gene #2174: 'AP3B1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
AP3B1 MUTATED 1 3 3
AP3B1 WILD-TYPE 88 157 135
'AP3B1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.886 (Fisher's exact test), Q value = 1

Table S22759.  Gene #2174: 'AP3B1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
AP3B1 MUTATED 3 3 1
AP3B1 WILD-TYPE 179 130 71
'AP3B1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.521 (Fisher's exact test), Q value = 0.84

Table S22760.  Gene #2174: 'AP3B1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
AP3B1 MUTATED 1 2 2 7
AP3B1 WILD-TYPE 111 94 90 179
'AP3B1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.319 (Fisher's exact test), Q value = 0.65

Table S22761.  Gene #2174: 'AP3B1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
AP3B1 MUTATED 2 0 2 1 1 1 5
AP3B1 WILD-TYPE 58 50 47 39 62 124 94
'AP3B1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.304 (Fisher's exact test), Q value = 0.63

Table S22762.  Gene #2174: 'AP3B1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
AP3B1 MUTATED 2 3 0 7
AP3B1 WILD-TYPE 128 75 68 189
'AP3B1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0492 (Fisher's exact test), Q value = 0.24

Table S22763.  Gene #2174: 'AP3B1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
AP3B1 MUTATED 0 3 2 1 5 1 0 0 0
AP3B1 WILD-TYPE 40 59 26 79 64 47 43 28 74

Figure S5462.  Get High-res Image Gene #2174: 'AP3B1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'C10ORF81 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.616 (Fisher's exact test), Q value = 0.91

Table S22764.  Gene #2175: 'C10ORF81 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
C10ORF81 MUTATED 1 3 0 0
C10ORF81 WILD-TYPE 177 180 101 20
'C10ORF81 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.339 (Fisher's exact test), Q value = 0.67

Table S22765.  Gene #2175: 'C10ORF81 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
C10ORF81 MUTATED 1 0 2
C10ORF81 WILD-TYPE 88 160 136
'C10ORF81 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.423 (Fisher's exact test), Q value = 0.75

Table S22766.  Gene #2175: 'C10ORF81 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
C10ORF81 MUTATED 2 0 1
C10ORF81 WILD-TYPE 180 133 71
'C10ORF81 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S22767.  Gene #2175: 'C10ORF81 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
C10ORF81 MUTATED 1 1 0 2
C10ORF81 WILD-TYPE 111 95 92 184
'C10ORF81 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.84 (Fisher's exact test), Q value = 1

Table S22768.  Gene #2175: 'C10ORF81 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
C10ORF81 MUTATED 1 1 0 0 0 1 1
C10ORF81 WILD-TYPE 59 49 49 40 63 124 98
'C10ORF81 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S22769.  Gene #2175: 'C10ORF81 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
C10ORF81 MUTATED 1 1 0 2
C10ORF81 WILD-TYPE 129 77 68 194
'C10ORF81 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.204 (Fisher's exact test), Q value = 0.51

Table S22770.  Gene #2175: 'C10ORF81 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
C10ORF81 MUTATED 0 1 1 0 1 0 0 1 0
C10ORF81 WILD-TYPE 40 61 27 80 68 48 43 27 74
'LY75 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.12 (Fisher's exact test), Q value = 0.39

Table S22771.  Gene #2176: 'LY75 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
LY75 MUTATED 2 0 0 1
LY75 WILD-TYPE 44 58 64 42
'LY75 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.184 (Fisher's exact test), Q value = 0.48

Table S22772.  Gene #2176: 'LY75 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
LY75 MUTATED 2 0 1
LY75 WILD-TYPE 49 83 76
'LY75 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.033 (Fisher's exact test), Q value = 0.19

Table S22773.  Gene #2176: 'LY75 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
LY75 MUTATED 9 1 1 0
LY75 WILD-TYPE 169 182 100 20

Figure S5463.  Get High-res Image Gene #2176: 'LY75 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'LY75 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.444 (Fisher's exact test), Q value = 0.77

Table S22774.  Gene #2176: 'LY75 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
LY75 MUTATED 4 1 2
LY75 WILD-TYPE 83 79 98
'LY75 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.121 (Fisher's exact test), Q value = 0.39

Table S22775.  Gene #2176: 'LY75 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
LY75 MUTATED 0 3 6
LY75 WILD-TYPE 89 157 132
'LY75 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S22776.  Gene #2176: 'LY75 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
LY75 MUTATED 5 3 1
LY75 WILD-TYPE 177 130 71
'LY75 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.606 (Fisher's exact test), Q value = 0.91

Table S22777.  Gene #2176: 'LY75 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
LY75 MUTATED 1 3 3 4
LY75 WILD-TYPE 111 93 89 182
'LY75 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0397 (Fisher's exact test), Q value = 0.21

Table S22778.  Gene #2176: 'LY75 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
LY75 MUTATED 1 1 4 0 2 0 3
LY75 WILD-TYPE 59 49 45 40 61 125 96

Figure S5464.  Get High-res Image Gene #2176: 'LY75 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'LY75 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.409 (Fisher's exact test), Q value = 0.74

Table S22779.  Gene #2176: 'LY75 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
LY75 MUTATED 2 2 0 7
LY75 WILD-TYPE 128 76 68 189
'LY75 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0244 (Fisher's exact test), Q value = 0.16

Table S22780.  Gene #2176: 'LY75 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
LY75 MUTATED 0 3 0 0 6 0 1 0 1
LY75 WILD-TYPE 40 59 28 80 63 48 42 28 73

Figure S5465.  Get High-res Image Gene #2176: 'LY75 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'RRP9 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.699 (Fisher's exact test), Q value = 0.97

Table S22781.  Gene #2177: 'RRP9 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
RRP9 MUTATED 2 1 1 2
RRP9 WILD-TYPE 44 57 63 41
'RRP9 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.244 (Fisher's exact test), Q value = 0.57

Table S22782.  Gene #2177: 'RRP9 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
RRP9 MUTATED 3 1 2
RRP9 WILD-TYPE 48 82 75
'RRP9 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.399 (Fisher's exact test), Q value = 0.72

Table S22783.  Gene #2177: 'RRP9 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
RRP9 MUTATED 8 5 1 0
RRP9 WILD-TYPE 170 178 100 20
'RRP9 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.205 (Fisher's exact test), Q value = 0.51

Table S22784.  Gene #2177: 'RRP9 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
RRP9 MUTATED 3 0 4
RRP9 WILD-TYPE 84 80 96
'RRP9 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.426 (Fisher's exact test), Q value = 0.75

Table S22785.  Gene #2177: 'RRP9 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
RRP9 MUTATED 2 3 6
RRP9 WILD-TYPE 87 157 132
'RRP9 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.725 (Fisher's exact test), Q value = 0.99

Table S22786.  Gene #2177: 'RRP9 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
RRP9 MUTATED 4 5 2
RRP9 WILD-TYPE 178 128 70
'RRP9 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.897 (Fisher's exact test), Q value = 1

Table S22787.  Gene #2177: 'RRP9 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
RRP9 MUTATED 3 2 2 7
RRP9 WILD-TYPE 109 94 90 179
'RRP9 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0285 (Fisher's exact test), Q value = 0.17

Table S22788.  Gene #2177: 'RRP9 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
RRP9 MUTATED 3 0 4 1 0 1 5
RRP9 WILD-TYPE 57 50 45 39 63 124 94

Figure S5466.  Get High-res Image Gene #2177: 'RRP9 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'RRP9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.684 (Fisher's exact test), Q value = 0.96

Table S22789.  Gene #2177: 'RRP9 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
RRP9 MUTATED 4 1 1 8
RRP9 WILD-TYPE 126 77 67 188
'RRP9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.147 (Fisher's exact test), Q value = 0.43

Table S22790.  Gene #2177: 'RRP9 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
RRP9 MUTATED 1 2 0 0 5 2 0 2 2
RRP9 WILD-TYPE 39 60 28 80 64 46 43 26 72
'CUTC MUTATION STATUS' versus 'CN_CNMF'

P value = 0.636 (Fisher's exact test), Q value = 0.93

Table S22791.  Gene #2178: 'CUTC MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
CUTC MUTATED 3 2 0 0
CUTC WILD-TYPE 175 181 101 20
'CUTC MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.468 (Fisher's exact test), Q value = 0.8

Table S22792.  Gene #2178: 'CUTC MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
CUTC MUTATED 0 2 2
CUTC WILD-TYPE 87 78 98
'CUTC MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.554 (Fisher's exact test), Q value = 0.87

Table S22793.  Gene #2178: 'CUTC MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
CUTC MUTATED 0 3 1
CUTC WILD-TYPE 89 157 137
'CUTC MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.325 (Fisher's exact test), Q value = 0.66

Table S22794.  Gene #2178: 'CUTC MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
CUTC MUTATED 1 3 0
CUTC WILD-TYPE 181 130 72
'CUTC MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.775 (Fisher's exact test), Q value = 1

Table S22795.  Gene #2178: 'CUTC MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
CUTC MUTATED 2 1 1 1
CUTC WILD-TYPE 110 95 91 185
'CUTC MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.108 (Fisher's exact test), Q value = 0.36

Table S22796.  Gene #2178: 'CUTC MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
CUTC MUTATED 2 0 2 0 0 1 0
CUTC WILD-TYPE 58 50 47 40 63 124 99
'CUTC MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.327 (Fisher's exact test), Q value = 0.66

Table S22797.  Gene #2178: 'CUTC MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
CUTC MUTATED 3 0 1 1
CUTC WILD-TYPE 127 78 67 195
'CUTC MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.182 (Fisher's exact test), Q value = 0.48

Table S22798.  Gene #2178: 'CUTC MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
CUTC MUTATED 1 0 0 2 0 0 2 0 0
CUTC WILD-TYPE 39 62 28 78 69 48 41 28 74
'CAPS2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.133 (Fisher's exact test), Q value = 0.41

Table S22799.  Gene #2179: 'CAPS2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
CAPS2 MUTATED 8 4 0 0
CAPS2 WILD-TYPE 170 179 101 20
'CAPS2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.936 (Fisher's exact test), Q value = 1

Table S22800.  Gene #2179: 'CAPS2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
CAPS2 MUTATED 4 3 5
CAPS2 WILD-TYPE 83 77 95
'CAPS2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.288 (Fisher's exact test), Q value = 0.62

Table S22801.  Gene #2179: 'CAPS2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
CAPS2 MUTATED 2 3 7
CAPS2 WILD-TYPE 87 157 131
'CAPS2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S22802.  Gene #2179: 'CAPS2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
CAPS2 MUTATED 6 4 2
CAPS2 WILD-TYPE 176 129 70
'CAPS2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0215 (Fisher's exact test), Q value = 0.15

Table S22803.  Gene #2179: 'CAPS2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
CAPS2 MUTATED 2 6 3 1
CAPS2 WILD-TYPE 110 90 89 185

Figure S5467.  Get High-res Image Gene #2179: 'CAPS2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'CAPS2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 9e-05 (Fisher's exact test), Q value = 0.0048

Table S22804.  Gene #2179: 'CAPS2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
CAPS2 MUTATED 1 2 7 1 0 1 0
CAPS2 WILD-TYPE 59 48 42 39 63 124 99

Figure S5468.  Get High-res Image Gene #2179: 'CAPS2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CAPS2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.167 (Fisher's exact test), Q value = 0.46

Table S22805.  Gene #2179: 'CAPS2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
CAPS2 MUTATED 7 1 1 3
CAPS2 WILD-TYPE 123 77 67 193
'CAPS2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.785 (Fisher's exact test), Q value = 1

Table S22806.  Gene #2179: 'CAPS2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
CAPS2 MUTATED 1 1 0 1 4 1 2 0 2
CAPS2 WILD-TYPE 39 61 28 79 65 47 41 28 72
'ESYT1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.628 (Fisher's exact test), Q value = 0.92

Table S22807.  Gene #2180: 'ESYT1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ESYT1 MUTATED 6 3 1 0
ESYT1 WILD-TYPE 172 180 100 20
'ESYT1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0322 (Fisher's exact test), Q value = 0.18

Table S22808.  Gene #2180: 'ESYT1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ESYT1 MUTATED 2 0 7
ESYT1 WILD-TYPE 85 80 93

Figure S5469.  Get High-res Image Gene #2180: 'ESYT1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'ESYT1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S22809.  Gene #2180: 'ESYT1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ESYT1 MUTATED 2 4 3
ESYT1 WILD-TYPE 87 156 135
'ESYT1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.499 (Fisher's exact test), Q value = 0.83

Table S22810.  Gene #2180: 'ESYT1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ESYT1 MUTATED 3 5 1
ESYT1 WILD-TYPE 179 128 71
'ESYT1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0285 (Fisher's exact test), Q value = 0.17

Table S22811.  Gene #2180: 'ESYT1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ESYT1 MUTATED 1 5 3 1
ESYT1 WILD-TYPE 111 91 89 185

Figure S5470.  Get High-res Image Gene #2180: 'ESYT1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'ESYT1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0151 (Fisher's exact test), Q value = 0.12

Table S22812.  Gene #2180: 'ESYT1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ESYT1 MUTATED 2 2 4 0 1 0 1
ESYT1 WILD-TYPE 58 48 45 40 62 125 98

Figure S5471.  Get High-res Image Gene #2180: 'ESYT1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ESYT1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.881 (Fisher's exact test), Q value = 1

Table S22813.  Gene #2180: 'ESYT1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ESYT1 MUTATED 4 1 1 4
ESYT1 WILD-TYPE 126 77 67 192
'ESYT1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.13 (Fisher's exact test), Q value = 0.4

Table S22814.  Gene #2180: 'ESYT1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ESYT1 MUTATED 0 1 0 3 5 0 1 0 0
ESYT1 WILD-TYPE 40 61 28 77 64 48 42 28 74
'ESYT1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.196 (Fisher's exact test), Q value = 0.5

Table S22815.  Gene #2180: 'ESYT1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
ESYT1 MUTATED 0 1 2 2
ESYT1 WILD-TYPE 33 30 25 17
'ESYT1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0417 (Fisher's exact test), Q value = 0.22

Table S22816.  Gene #2180: 'ESYT1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
ESYT1 MUTATED 1 0 4 0
ESYT1 WILD-TYPE 53 10 20 22

Figure S5472.  Get High-res Image Gene #2180: 'ESYT1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

'KRT1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0159 (Fisher's exact test), Q value = 0.13

Table S22817.  Gene #2181: 'KRT1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
KRT1 MUTATED 1 0 0 3
KRT1 WILD-TYPE 45 58 64 40

Figure S5473.  Get High-res Image Gene #2181: 'KRT1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'KRT1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.554 (Fisher's exact test), Q value = 0.87

Table S22818.  Gene #2181: 'KRT1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
KRT1 MUTATED 2 1 1
KRT1 WILD-TYPE 49 82 76
'KRT1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0746 (Fisher's exact test), Q value = 0.29

Table S22819.  Gene #2181: 'KRT1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
KRT1 MUTATED 10 2 2 0
KRT1 WILD-TYPE 168 181 99 20
'KRT1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.506 (Fisher's exact test), Q value = 0.83

Table S22820.  Gene #2181: 'KRT1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
KRT1 MUTATED 3 2 6
KRT1 WILD-TYPE 84 78 94
'KRT1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.607 (Fisher's exact test), Q value = 0.91

Table S22821.  Gene #2181: 'KRT1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
KRT1 MUTATED 2 5 7
KRT1 WILD-TYPE 87 155 131
'KRT1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.635 (Fisher's exact test), Q value = 0.93

Table S22822.  Gene #2181: 'KRT1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
KRT1 MUTATED 8 5 1
KRT1 WILD-TYPE 174 128 71
'KRT1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.06 (Fisher's exact test), Q value = 0.27

Table S22823.  Gene #2181: 'KRT1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
KRT1 MUTATED 2 3 7 3
KRT1 WILD-TYPE 110 93 85 183
'KRT1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0217 (Fisher's exact test), Q value = 0.15

Table S22824.  Gene #2181: 'KRT1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
KRT1 MUTATED 2 3 4 0 3 0 3
KRT1 WILD-TYPE 58 47 45 40 60 125 96

Figure S5474.  Get High-res Image Gene #2181: 'KRT1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'KRT1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.125 (Fisher's exact test), Q value = 0.39

Table S22825.  Gene #2181: 'KRT1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
KRT1 MUTATED 7 3 0 4
KRT1 WILD-TYPE 123 75 68 192
'KRT1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0975 (Fisher's exact test), Q value = 0.34

Table S22826.  Gene #2181: 'KRT1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
KRT1 MUTATED 0 3 4 1 2 1 1 1 1
KRT1 WILD-TYPE 40 59 24 79 67 47 42 27 73
'KRT1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00477 (Fisher's exact test), Q value = 0.062

Table S22827.  Gene #2181: 'KRT1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
KRT1 MUTATED 2 0 0 4
KRT1 WILD-TYPE 31 31 27 15

Figure S5475.  Get High-res Image Gene #2181: 'KRT1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'KRT1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S22828.  Gene #2181: 'KRT1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
KRT1 MUTATED 4 0 1 1
KRT1 WILD-TYPE 50 10 23 21
'SUPT6H MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.309 (Fisher's exact test), Q value = 0.64

Table S22829.  Gene #2182: 'SUPT6H MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
SUPT6H MUTATED 3 3 1 4
SUPT6H WILD-TYPE 43 55 63 39
'SUPT6H MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0762 (Fisher's exact test), Q value = 0.3

Table S22830.  Gene #2182: 'SUPT6H MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
SUPT6H MUTATED 6 3 2
SUPT6H WILD-TYPE 45 80 75
'SUPT6H MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0018 (Fisher's exact test), Q value = 0.035

Table S22831.  Gene #2182: 'SUPT6H MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
SUPT6H MUTATED 17 4 1 0
SUPT6H WILD-TYPE 161 179 100 20

Figure S5476.  Get High-res Image Gene #2182: 'SUPT6H MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'SUPT6H MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.121 (Fisher's exact test), Q value = 0.39

Table S22832.  Gene #2182: 'SUPT6H MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
SUPT6H MUTATED 2 1 7
SUPT6H WILD-TYPE 85 79 93
'SUPT6H MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.688 (Fisher's exact test), Q value = 0.97

Table S22833.  Gene #2182: 'SUPT6H MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
SUPT6H MUTATED 5 6 8
SUPT6H WILD-TYPE 84 154 130
'SUPT6H MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.745 (Fisher's exact test), Q value = 1

Table S22834.  Gene #2182: 'SUPT6H MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
SUPT6H MUTATED 10 7 2
SUPT6H WILD-TYPE 172 126 70
'SUPT6H MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.402 (Fisher's exact test), Q value = 0.73

Table S22835.  Gene #2182: 'SUPT6H MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
SUPT6H MUTATED 3 7 3 10
SUPT6H WILD-TYPE 109 89 89 176
'SUPT6H MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.021 (Fisher's exact test), Q value = 0.15

Table S22836.  Gene #2182: 'SUPT6H MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
SUPT6H MUTATED 4 1 7 1 0 4 6
SUPT6H WILD-TYPE 56 49 42 39 63 121 93

Figure S5477.  Get High-res Image Gene #2182: 'SUPT6H MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'SUPT6H MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0282 (Fisher's exact test), Q value = 0.17

Table S22837.  Gene #2182: 'SUPT6H MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
SUPT6H MUTATED 6 0 1 14
SUPT6H WILD-TYPE 124 78 67 182

Figure S5478.  Get High-res Image Gene #2182: 'SUPT6H MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'SUPT6H MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00157 (Fisher's exact test), Q value = 0.033

Table S22838.  Gene #2182: 'SUPT6H MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
SUPT6H MUTATED 2 0 0 3 10 2 2 2 0
SUPT6H WILD-TYPE 38 62 28 77 59 46 41 26 74

Figure S5479.  Get High-res Image Gene #2182: 'SUPT6H MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'SUPT6H MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.728 (Fisher's exact test), Q value = 0.99

Table S22839.  Gene #2182: 'SUPT6H MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
SUPT6H MUTATED 2 1 1 2
SUPT6H WILD-TYPE 31 30 26 17
'SUPT6H MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.281 (Fisher's exact test), Q value = 0.61

Table S22840.  Gene #2182: 'SUPT6H MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
SUPT6H MUTATED 3 0 3 0
SUPT6H WILD-TYPE 51 10 21 22
'IGJ MUTATION STATUS' versus 'CN_CNMF'

P value = 0.123 (Fisher's exact test), Q value = 0.39

Table S22841.  Gene #2183: 'IGJ MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
IGJ MUTATED 4 0 0 0
IGJ WILD-TYPE 174 183 101 20
'IGJ MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.685 (Fisher's exact test), Q value = 0.96

Table S22842.  Gene #2183: 'IGJ MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
IGJ MUTATED 0 2 2
IGJ WILD-TYPE 89 158 136
'IGJ MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.83 (Fisher's exact test), Q value = 1

Table S22843.  Gene #2183: 'IGJ MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
IGJ MUTATED 2 2 0
IGJ WILD-TYPE 180 131 72
'IGJ MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.459 (Fisher's exact test), Q value = 0.79

Table S22844.  Gene #2183: 'IGJ MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
IGJ MUTATED 0 0 1 3
IGJ WILD-TYPE 112 96 91 183
'IGJ MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.353 (Fisher's exact test), Q value = 0.68

Table S22845.  Gene #2183: 'IGJ MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
IGJ MUTATED 1 0 1 0 0 0 2
IGJ WILD-TYPE 59 50 48 40 63 125 97
'IGJ MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.551 (Fisher's exact test), Q value = 0.87

Table S22846.  Gene #2183: 'IGJ MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
IGJ MUTATED 0 1 0 2
IGJ WILD-TYPE 130 77 68 194
'IGJ MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.936 (Fisher's exact test), Q value = 1

Table S22847.  Gene #2183: 'IGJ MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
IGJ MUTATED 0 1 0 0 1 0 0 0 1
IGJ WILD-TYPE 40 61 28 80 68 48 43 28 73
'TRAF3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00691 (Fisher's exact test), Q value = 0.076

Table S22848.  Gene #2184: 'TRAF3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
TRAF3 MUTATED 4 0 0 2
TRAF3 WILD-TYPE 42 58 64 41

Figure S5480.  Get High-res Image Gene #2184: 'TRAF3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'TRAF3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00165 (Fisher's exact test), Q value = 0.034

Table S22849.  Gene #2184: 'TRAF3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
TRAF3 MUTATED 5 0 1
TRAF3 WILD-TYPE 46 83 76

Figure S5481.  Get High-res Image Gene #2184: 'TRAF3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'TRAF3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00372 (Fisher's exact test), Q value = 0.055

Table S22850.  Gene #2184: 'TRAF3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
TRAF3 MUTATED 10 0 2 0
TRAF3 WILD-TYPE 168 183 99 20

Figure S5482.  Get High-res Image Gene #2184: 'TRAF3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'TRAF3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.196 (Fisher's exact test), Q value = 0.5

Table S22851.  Gene #2184: 'TRAF3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
TRAF3 MUTATED 1 0 4
TRAF3 WILD-TYPE 86 80 96
'TRAF3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.268 (Fisher's exact test), Q value = 0.59

Table S22852.  Gene #2184: 'TRAF3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
TRAF3 MUTATED 2 2 6
TRAF3 WILD-TYPE 87 158 132
'TRAF3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.528 (Fisher's exact test), Q value = 0.85

Table S22853.  Gene #2184: 'TRAF3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
TRAF3 MUTATED 5 2 3
TRAF3 WILD-TYPE 177 131 69
'TRAF3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.518 (Fisher's exact test), Q value = 0.84

Table S22854.  Gene #2184: 'TRAF3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
TRAF3 MUTATED 1 2 2 7
TRAF3 WILD-TYPE 111 94 90 179
'TRAF3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00038 (Fisher's exact test), Q value = 0.013

Table S22855.  Gene #2184: 'TRAF3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
TRAF3 MUTATED 0 0 3 1 0 0 8
TRAF3 WILD-TYPE 60 50 46 39 63 125 91

Figure S5483.  Get High-res Image Gene #2184: 'TRAF3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'TRAF3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.806 (Fisher's exact test), Q value = 1

Table S22856.  Gene #2184: 'TRAF3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
TRAF3 MUTATED 3 1 1 7
TRAF3 WILD-TYPE 127 77 67 189
'TRAF3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00133 (Fisher's exact test), Q value = 0.03

Table S22857.  Gene #2184: 'TRAF3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
TRAF3 MUTATED 0 2 1 0 8 0 0 0 1
TRAF3 WILD-TYPE 40 60 27 80 61 48 43 28 73

Figure S5484.  Get High-res Image Gene #2184: 'TRAF3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'TRAF3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0833 (Fisher's exact test), Q value = 0.31

Table S22858.  Gene #2184: 'TRAF3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
TRAF3 MUTATED 0 1 0 2
TRAF3 WILD-TYPE 33 30 27 17
'TRAF3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.563 (Fisher's exact test), Q value = 0.87

Table S22859.  Gene #2184: 'TRAF3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
TRAF3 MUTATED 3 0 0 0
TRAF3 WILD-TYPE 51 10 24 22
'IPO11 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0269 (Fisher's exact test), Q value = 0.17

Table S22860.  Gene #2185: 'IPO11 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
IPO11 MUTATED 3 0 0 2
IPO11 WILD-TYPE 43 58 64 41

Figure S5485.  Get High-res Image Gene #2185: 'IPO11 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'IPO11 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00654 (Fisher's exact test), Q value = 0.074

Table S22861.  Gene #2185: 'IPO11 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
IPO11 MUTATED 4 0 1
IPO11 WILD-TYPE 47 83 76

Figure S5486.  Get High-res Image Gene #2185: 'IPO11 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'IPO11 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0878 (Fisher's exact test), Q value = 0.32

Table S22862.  Gene #2185: 'IPO11 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
IPO11 MUTATED 10 2 3 0
IPO11 WILD-TYPE 168 181 98 20
'IPO11 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.862 (Fisher's exact test), Q value = 1

Table S22863.  Gene #2185: 'IPO11 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
IPO11 MUTATED 3 3 5
IPO11 WILD-TYPE 84 77 95
'IPO11 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.391 (Fisher's exact test), Q value = 0.72

Table S22864.  Gene #2185: 'IPO11 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
IPO11 MUTATED 1 4 6
IPO11 WILD-TYPE 88 156 132
'IPO11 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.508 (Fisher's exact test), Q value = 0.83

Table S22865.  Gene #2185: 'IPO11 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
IPO11 MUTATED 7 2 2
IPO11 WILD-TYPE 175 131 70
'IPO11 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.966 (Fisher's exact test), Q value = 1

Table S22866.  Gene #2185: 'IPO11 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
IPO11 MUTATED 4 3 3 5
IPO11 WILD-TYPE 108 93 89 181
'IPO11 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.112 (Fisher's exact test), Q value = 0.37

Table S22867.  Gene #2185: 'IPO11 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
IPO11 MUTATED 2 3 2 1 3 0 4
IPO11 WILD-TYPE 58 47 47 39 60 125 95
'IPO11 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.37 (Fisher's exact test), Q value = 0.7

Table S22868.  Gene #2185: 'IPO11 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
IPO11 MUTATED 7 2 1 4
IPO11 WILD-TYPE 123 76 67 192
'IPO11 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.617 (Fisher's exact test), Q value = 0.92

Table S22869.  Gene #2185: 'IPO11 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
IPO11 MUTATED 1 3 1 4 3 1 1 0 0
IPO11 WILD-TYPE 39 59 27 76 66 47 42 28 74
'IPO11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S22870.  Gene #2185: 'IPO11 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
IPO11 MUTATED 1 1 1 1
IPO11 WILD-TYPE 32 30 26 18
'IPO11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.072 (Fisher's exact test), Q value = 0.29

Table S22871.  Gene #2185: 'IPO11 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
IPO11 MUTATED 0 1 2 1
IPO11 WILD-TYPE 54 9 22 21
'AFF3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00985 (Fisher's exact test), Q value = 0.094

Table S22872.  Gene #2186: 'AFF3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
AFF3 MUTATED 2 1 0 5
AFF3 WILD-TYPE 44 57 64 38

Figure S5487.  Get High-res Image Gene #2186: 'AFF3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'AFF3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00253 (Fisher's exact test), Q value = 0.044

Table S22873.  Gene #2186: 'AFF3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
AFF3 MUTATED 6 2 0
AFF3 WILD-TYPE 45 81 77

Figure S5488.  Get High-res Image Gene #2186: 'AFF3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'AFF3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00574 (Fisher's exact test), Q value = 0.069

Table S22874.  Gene #2186: 'AFF3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
AFF3 MUTATED 17 3 4 0
AFF3 WILD-TYPE 161 180 97 20

Figure S5489.  Get High-res Image Gene #2186: 'AFF3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'AFF3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0892 (Fisher's exact test), Q value = 0.32

Table S22875.  Gene #2186: 'AFF3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
AFF3 MUTATED 8 4 2
AFF3 WILD-TYPE 79 76 98
'AFF3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.374 (Fisher's exact test), Q value = 0.7

Table S22876.  Gene #2186: 'AFF3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
AFF3 MUTATED 6 6 10
AFF3 WILD-TYPE 83 154 128
'AFF3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.959 (Fisher's exact test), Q value = 1

Table S22877.  Gene #2186: 'AFF3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
AFF3 MUTATED 11 7 4
AFF3 WILD-TYPE 171 126 68
'AFF3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.208 (Fisher's exact test), Q value = 0.51

Table S22878.  Gene #2186: 'AFF3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
AFF3 MUTATED 3 3 8 11
AFF3 WILD-TYPE 109 93 84 175
'AFF3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0337 (Fisher's exact test), Q value = 0.19

Table S22879.  Gene #2186: 'AFF3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
AFF3 MUTATED 2 2 5 0 5 2 9
AFF3 WILD-TYPE 58 48 44 40 58 123 90

Figure S5490.  Get High-res Image Gene #2186: 'AFF3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'AFF3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.659 (Fisher's exact test), Q value = 0.95

Table S22880.  Gene #2186: 'AFF3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
AFF3 MUTATED 5 5 2 12
AFF3 WILD-TYPE 125 73 66 184
'AFF3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.102 (Fisher's exact test), Q value = 0.35

Table S22881.  Gene #2186: 'AFF3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
AFF3 MUTATED 1 7 2 3 6 0 0 1 4
AFF3 WILD-TYPE 39 55 26 77 63 48 43 27 70
'AFF3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0134 (Fisher's exact test), Q value = 0.11

Table S22882.  Gene #2186: 'AFF3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
AFF3 MUTATED 0 1 0 3
AFF3 WILD-TYPE 33 30 27 16

Figure S5491.  Get High-res Image Gene #2186: 'AFF3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'AFF3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.868 (Fisher's exact test), Q value = 1

Table S22883.  Gene #2186: 'AFF3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
AFF3 MUTATED 3 0 1 0
AFF3 WILD-TYPE 51 10 23 22
'BTBD7 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0269 (Fisher's exact test), Q value = 0.17

Table S22884.  Gene #2187: 'BTBD7 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
BTBD7 MUTATED 3 0 0 2
BTBD7 WILD-TYPE 43 58 64 41

Figure S5492.  Get High-res Image Gene #2187: 'BTBD7 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'BTBD7 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.213 (Fisher's exact test), Q value = 0.52

Table S22885.  Gene #2187: 'BTBD7 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
BTBD7 MUTATED 2 3 0
BTBD7 WILD-TYPE 49 80 77
'BTBD7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0153 (Fisher's exact test), Q value = 0.12

Table S22886.  Gene #2187: 'BTBD7 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
BTBD7 MUTATED 10 2 0 0
BTBD7 WILD-TYPE 168 181 101 20

Figure S5493.  Get High-res Image Gene #2187: 'BTBD7 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'BTBD7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.82 (Fisher's exact test), Q value = 1

Table S22887.  Gene #2187: 'BTBD7 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
BTBD7 MUTATED 2 2 4
BTBD7 WILD-TYPE 85 78 96
'BTBD7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.389 (Fisher's exact test), Q value = 0.72

Table S22888.  Gene #2187: 'BTBD7 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
BTBD7 MUTATED 1 4 6
BTBD7 WILD-TYPE 88 156 132
'BTBD7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.145 (Fisher's exact test), Q value = 0.42

Table S22889.  Gene #2187: 'BTBD7 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
BTBD7 MUTATED 3 7 1
BTBD7 WILD-TYPE 179 126 71
'BTBD7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.292 (Fisher's exact test), Q value = 0.62

Table S22890.  Gene #2187: 'BTBD7 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
BTBD7 MUTATED 1 5 2 4
BTBD7 WILD-TYPE 111 91 90 182
'BTBD7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.02 (Fisher's exact test), Q value = 0.14

Table S22891.  Gene #2187: 'BTBD7 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
BTBD7 MUTATED 0 2 5 0 0 2 3
BTBD7 WILD-TYPE 60 48 44 40 63 123 96

Figure S5494.  Get High-res Image Gene #2187: 'BTBD7 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'BTBD7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.881 (Fisher's exact test), Q value = 1

Table S22892.  Gene #2187: 'BTBD7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
BTBD7 MUTATED 4 1 1 4
BTBD7 WILD-TYPE 126 77 67 192
'BTBD7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.517 (Fisher's exact test), Q value = 0.84

Table S22893.  Gene #2187: 'BTBD7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
BTBD7 MUTATED 1 2 1 2 1 0 2 1 0
BTBD7 WILD-TYPE 39 60 27 78 68 48 41 27 74
'SUSD5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.243 (Fisher's exact test), Q value = 0.57

Table S22894.  Gene #2188: 'SUSD5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
SUSD5 MUTATED 6 3 0 0
SUSD5 WILD-TYPE 172 180 101 20
'SUSD5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.327 (Fisher's exact test), Q value = 0.66

Table S22895.  Gene #2188: 'SUSD5 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
SUSD5 MUTATED 4 1 1
SUSD5 WILD-TYPE 83 79 99
'SUSD5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.31 (Fisher's exact test), Q value = 0.64

Table S22896.  Gene #2188: 'SUSD5 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
SUSD5 MUTATED 0 4 4
SUSD5 WILD-TYPE 89 156 134
'SUSD5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.809 (Fisher's exact test), Q value = 1

Table S22897.  Gene #2188: 'SUSD5 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
SUSD5 MUTATED 4 2 2
SUSD5 WILD-TYPE 178 131 70
'SUSD5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.622 (Fisher's exact test), Q value = 0.92

Table S22898.  Gene #2188: 'SUSD5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
SUSD5 MUTATED 1 1 3 4
SUSD5 WILD-TYPE 111 95 89 182
'SUSD5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.309 (Fisher's exact test), Q value = 0.64

Table S22899.  Gene #2188: 'SUSD5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
SUSD5 MUTATED 0 0 3 1 1 3 1
SUSD5 WILD-TYPE 60 50 46 39 62 122 98
'SUSD5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.433 (Fisher's exact test), Q value = 0.76

Table S22900.  Gene #2188: 'SUSD5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
SUSD5 MUTATED 1 3 1 4
SUSD5 WILD-TYPE 129 75 67 192
'SUSD5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.81 (Fisher's exact test), Q value = 1

Table S22901.  Gene #2188: 'SUSD5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
SUSD5 MUTATED 0 3 0 2 2 0 1 0 1
SUSD5 WILD-TYPE 40 59 28 78 67 48 42 28 73
'SUSD5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.136 (Fisher's exact test), Q value = 0.41

Table S22902.  Gene #2188: 'SUSD5 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
SUSD5 MUTATED 1 0 0 2
SUSD5 WILD-TYPE 32 31 27 17
'SUSD5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.696 (Fisher's exact test), Q value = 0.97

Table S22903.  Gene #2188: 'SUSD5 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
SUSD5 MUTATED 1 0 1 1
SUSD5 WILD-TYPE 53 10 23 21
'CDKL4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.179 (Fisher's exact test), Q value = 0.48

Table S22904.  Gene #2189: 'CDKL4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
CDKL4 MUTATED 4 0 1 0
CDKL4 WILD-TYPE 174 183 100 20
'CDKL4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.198 (Fisher's exact test), Q value = 0.5

Table S22905.  Gene #2189: 'CDKL4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
CDKL4 MUTATED 1 2 0
CDKL4 WILD-TYPE 86 78 100
'CDKL4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.686 (Fisher's exact test), Q value = 0.96

Table S22906.  Gene #2189: 'CDKL4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
CDKL4 MUTATED 0 2 2
CDKL4 WILD-TYPE 89 158 136
'CDKL4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.828 (Fisher's exact test), Q value = 1

Table S22907.  Gene #2189: 'CDKL4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
CDKL4 MUTATED 2 2 0
CDKL4 WILD-TYPE 180 131 72
'CDKL4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.528 (Fisher's exact test), Q value = 0.85

Table S22908.  Gene #2189: 'CDKL4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
CDKL4 MUTATED 1 0 2 2
CDKL4 WILD-TYPE 111 96 90 184
'CDKL4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.934 (Fisher's exact test), Q value = 1

Table S22909.  Gene #2189: 'CDKL4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
CDKL4 MUTATED 1 0 1 0 1 1 1
CDKL4 WILD-TYPE 59 50 48 40 62 124 98
'CDKL4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.544 (Fisher's exact test), Q value = 0.86

Table S22910.  Gene #2189: 'CDKL4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
CDKL4 MUTATED 1 2 0 2
CDKL4 WILD-TYPE 129 76 68 194
'CDKL4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.3 (Fisher's exact test), Q value = 0.63

Table S22911.  Gene #2189: 'CDKL4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
CDKL4 MUTATED 1 2 1 1 0 0 0 0 0
CDKL4 WILD-TYPE 39 60 27 79 69 48 43 28 74
'B3GALNT2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.278 (Fisher's exact test), Q value = 0.6

Table S22912.  Gene #2190: 'B3GALNT2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
B3GALNT2 MUTATED 3 0 0 0
B3GALNT2 WILD-TYPE 175 183 101 20
'B3GALNT2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.515 (Fisher's exact test), Q value = 0.84

Table S22913.  Gene #2190: 'B3GALNT2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
B3GALNT2 MUTATED 2 0 1
B3GALNT2 WILD-TYPE 85 80 99
'B3GALNT2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0561 (Fisher's exact test), Q value = 0.26

Table S22914.  Gene #2190: 'B3GALNT2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
B3GALNT2 MUTATED 0 0 3
B3GALNT2 WILD-TYPE 89 160 135
'B3GALNT2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.3 (Fisher's exact test), Q value = 0.63

Table S22915.  Gene #2190: 'B3GALNT2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
B3GALNT2 MUTATED 3 0 0
B3GALNT2 WILD-TYPE 179 133 72
'B3GALNT2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.048 (Fisher's exact test), Q value = 0.23

Table S22916.  Gene #2190: 'B3GALNT2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
B3GALNT2 MUTATED 0 1 2 0
B3GALNT2 WILD-TYPE 112 95 90 186

Figure S5495.  Get High-res Image Gene #2190: 'B3GALNT2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'B3GALNT2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0306 (Fisher's exact test), Q value = 0.18

Table S22917.  Gene #2190: 'B3GALNT2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
B3GALNT2 MUTATED 1 0 2 0 0 0 0
B3GALNT2 WILD-TYPE 59 50 47 40 63 125 99

Figure S5496.  Get High-res Image Gene #2190: 'B3GALNT2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'B3GALNT2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0653 (Fisher's exact test), Q value = 0.28

Table S22918.  Gene #2190: 'B3GALNT2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
B3GALNT2 MUTATED 3 0 0 0
B3GALNT2 WILD-TYPE 127 78 68 196
'B3GALNT2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.428 (Fisher's exact test), Q value = 0.76

Table S22919.  Gene #2190: 'B3GALNT2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
B3GALNT2 MUTATED 0 2 0 0 1 0 0 0 0
B3GALNT2 WILD-TYPE 40 60 28 80 68 48 43 28 74
'OR4N5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.416 (Fisher's exact test), Q value = 0.74

Table S22920.  Gene #2191: 'OR4N5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
OR4N5 MUTATED 2 0 1 0
OR4N5 WILD-TYPE 176 183 100 20
'OR4N5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.515 (Fisher's exact test), Q value = 0.84

Table S22921.  Gene #2191: 'OR4N5 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
OR4N5 MUTATED 2 0 1
OR4N5 WILD-TYPE 85 80 99
'OR4N5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.337 (Fisher's exact test), Q value = 0.66

Table S22922.  Gene #2191: 'OR4N5 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
OR4N5 MUTATED 1 0 2
OR4N5 WILD-TYPE 88 160 136
'OR4N5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.3 (Fisher's exact test), Q value = 0.63

Table S22923.  Gene #2191: 'OR4N5 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
OR4N5 MUTATED 3 0 0
OR4N5 WILD-TYPE 179 133 72
'OR4N5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0489 (Fisher's exact test), Q value = 0.24

Table S22924.  Gene #2191: 'OR4N5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
OR4N5 MUTATED 0 1 2 0
OR4N5 WILD-TYPE 112 95 90 186

Figure S5497.  Get High-res Image Gene #2191: 'OR4N5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'OR4N5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.127 (Fisher's exact test), Q value = 0.4

Table S22925.  Gene #2191: 'OR4N5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
OR4N5 MUTATED 0 0 1 1 1 0 0
OR4N5 WILD-TYPE 60 50 48 39 62 125 99
'OR4N5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.257 (Fisher's exact test), Q value = 0.58

Table S22926.  Gene #2191: 'OR4N5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
OR4N5 MUTATED 1 1 1 0
OR4N5 WILD-TYPE 129 77 67 196
'OR4N5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.649 (Fisher's exact test), Q value = 0.94

Table S22927.  Gene #2191: 'OR4N5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
OR4N5 MUTATED 0 1 0 0 1 0 1 0 0
OR4N5 WILD-TYPE 40 61 28 80 68 48 42 28 74
'GADD45GIP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.535 (Fisher's exact test), Q value = 0.85

Table S22928.  Gene #2192: 'GADD45GIP1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
GADD45GIP1 MUTATED 3 1 0 0
GADD45GIP1 WILD-TYPE 175 182 101 20
'GADD45GIP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.558 (Fisher's exact test), Q value = 0.87

Table S22929.  Gene #2192: 'GADD45GIP1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
GADD45GIP1 MUTATED 2 0 2
GADD45GIP1 WILD-TYPE 85 80 98
'GADD45GIP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0154 (Fisher's exact test), Q value = 0.12

Table S22930.  Gene #2192: 'GADD45GIP1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
GADD45GIP1 MUTATED 0 3 1 0
GADD45GIP1 WILD-TYPE 112 93 91 186

Figure S5498.  Get High-res Image Gene #2192: 'GADD45GIP1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'GADD45GIP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00268 (Fisher's exact test), Q value = 0.045

Table S22931.  Gene #2192: 'GADD45GIP1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
GADD45GIP1 MUTATED 0 0 2 2 0 0 0
GADD45GIP1 WILD-TYPE 60 50 47 38 63 125 99

Figure S5499.  Get High-res Image Gene #2192: 'GADD45GIP1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'GADD45GIP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.346 (Fisher's exact test), Q value = 0.67

Table S22932.  Gene #2192: 'GADD45GIP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
GADD45GIP1 MUTATED 1 2 0 1
GADD45GIP1 WILD-TYPE 129 76 68 195
'GADD45GIP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.385 (Fisher's exact test), Q value = 0.71

Table S22933.  Gene #2192: 'GADD45GIP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
GADD45GIP1 MUTATED 1 2 0 0 1 0 0 0 0
GADD45GIP1 WILD-TYPE 39 60 28 80 68 48 43 28 74
'GADD45GIP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.783 (Fisher's exact test), Q value = 1

Table S22934.  Gene #2192: 'GADD45GIP1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
GADD45GIP1 MUTATED 1 0 1 1
GADD45GIP1 WILD-TYPE 32 31 26 18
'GADD45GIP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.312 (Fisher's exact test), Q value = 0.64

Table S22935.  Gene #2192: 'GADD45GIP1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
GADD45GIP1 MUTATED 1 1 1 0
GADD45GIP1 WILD-TYPE 53 9 23 22
'RASGRP3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.134 (Fisher's exact test), Q value = 0.41

Table S22936.  Gene #2193: 'RASGRP3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
RASGRP3 MUTATED 1 0 1 3
RASGRP3 WILD-TYPE 45 58 63 40
'RASGRP3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.848 (Fisher's exact test), Q value = 1

Table S22937.  Gene #2193: 'RASGRP3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
RASGRP3 MUTATED 1 3 1
RASGRP3 WILD-TYPE 50 80 76
'RASGRP3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.359 (Fisher's exact test), Q value = 0.69

Table S22938.  Gene #2193: 'RASGRP3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
RASGRP3 MUTATED 8 3 2 0
RASGRP3 WILD-TYPE 170 180 99 20
'RASGRP3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.797 (Fisher's exact test), Q value = 1

Table S22939.  Gene #2193: 'RASGRP3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
RASGRP3 MUTATED 2 3 2
RASGRP3 WILD-TYPE 85 77 98
'RASGRP3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0704 (Fisher's exact test), Q value = 0.29

Table S22940.  Gene #2193: 'RASGRP3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
RASGRP3 MUTATED 0 8 4
RASGRP3 WILD-TYPE 89 152 134
'RASGRP3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0632 (Fisher's exact test), Q value = 0.27

Table S22941.  Gene #2193: 'RASGRP3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
RASGRP3 MUTATED 2 7 3
RASGRP3 WILD-TYPE 180 126 69
'RASGRP3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.258 (Fisher's exact test), Q value = 0.58

Table S22942.  Gene #2193: 'RASGRP3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
RASGRP3 MUTATED 3 4 0 6
RASGRP3 WILD-TYPE 109 92 92 180
'RASGRP3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.786 (Fisher's exact test), Q value = 1

Table S22943.  Gene #2193: 'RASGRP3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
RASGRP3 MUTATED 2 3 1 1 1 2 3
RASGRP3 WILD-TYPE 58 47 48 39 62 123 96
'RASGRP3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.314 (Fisher's exact test), Q value = 0.64

Table S22944.  Gene #2193: 'RASGRP3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
RASGRP3 MUTATED 4 0 3 5
RASGRP3 WILD-TYPE 126 78 65 191
'RASGRP3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.299 (Fisher's exact test), Q value = 0.63

Table S22945.  Gene #2193: 'RASGRP3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
RASGRP3 MUTATED 2 0 2 1 3 0 1 1 2
RASGRP3 WILD-TYPE 38 62 26 79 66 48 42 27 72
'STOX2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.277 (Fisher's exact test), Q value = 0.6

Table S22946.  Gene #2194: 'STOX2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
STOX2 MUTATED 7 2 1 0
STOX2 WILD-TYPE 171 181 100 20
'STOX2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0467 (Fisher's exact test), Q value = 0.23

Table S22947.  Gene #2194: 'STOX2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
STOX2 MUTATED 0 2 6
STOX2 WILD-TYPE 87 78 94

Figure S5500.  Get High-res Image Gene #2194: 'STOX2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'STOX2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.132 (Fisher's exact test), Q value = 0.41

Table S22948.  Gene #2194: 'STOX2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
STOX2 MUTATED 4 3 1
STOX2 WILD-TYPE 85 157 137
'STOX2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.807 (Fisher's exact test), Q value = 1

Table S22949.  Gene #2194: 'STOX2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
STOX2 MUTATED 4 2 2
STOX2 WILD-TYPE 178 131 70
'STOX2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.109 (Fisher's exact test), Q value = 0.36

Table S22950.  Gene #2194: 'STOX2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
STOX2 MUTATED 1 5 2 2
STOX2 WILD-TYPE 111 91 90 184
'STOX2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.65 (Fisher's exact test), Q value = 0.94

Table S22951.  Gene #2194: 'STOX2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
STOX2 MUTATED 1 2 2 1 1 1 2
STOX2 WILD-TYPE 59 48 47 39 62 124 97
'STOX2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.285 (Fisher's exact test), Q value = 0.61

Table S22952.  Gene #2194: 'STOX2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
STOX2 MUTATED 5 2 0 3
STOX2 WILD-TYPE 125 76 68 193
'STOX2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.109 (Fisher's exact test), Q value = 0.37

Table S22953.  Gene #2194: 'STOX2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
STOX2 MUTATED 2 3 1 0 3 1 0 0 0
STOX2 WILD-TYPE 38 59 27 80 66 47 43 28 74
'SIGLEC14 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0601 (Fisher's exact test), Q value = 0.27

Table S22954.  Gene #2195: 'SIGLEC14 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
SIGLEC14 MUTATED 7 1 0 0
SIGLEC14 WILD-TYPE 171 182 101 20
'SIGLEC14 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.68 (Fisher's exact test), Q value = 0.96

Table S22955.  Gene #2195: 'SIGLEC14 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
SIGLEC14 MUTATED 3 1 2
SIGLEC14 WILD-TYPE 84 79 98
'SIGLEC14 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.241 (Fisher's exact test), Q value = 0.56

Table S22956.  Gene #2195: 'SIGLEC14 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
SIGLEC14 MUTATED 0 2 4
SIGLEC14 WILD-TYPE 89 158 134
'SIGLEC14 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.665 (Fisher's exact test), Q value = 0.95

Table S22957.  Gene #2195: 'SIGLEC14 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
SIGLEC14 MUTATED 4 2 0
SIGLEC14 WILD-TYPE 178 131 72
'SIGLEC14 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.859 (Fisher's exact test), Q value = 1

Table S22958.  Gene #2195: 'SIGLEC14 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
SIGLEC14 MUTATED 1 2 2 3
SIGLEC14 WILD-TYPE 111 94 90 183
'SIGLEC14 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0651 (Fisher's exact test), Q value = 0.28

Table S22959.  Gene #2195: 'SIGLEC14 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
SIGLEC14 MUTATED 1 0 4 0 0 2 1
SIGLEC14 WILD-TYPE 59 50 45 40 63 123 98
'SIGLEC14 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.788 (Fisher's exact test), Q value = 1

Table S22960.  Gene #2195: 'SIGLEC14 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
SIGLEC14 MUTATED 1 1 1 5
SIGLEC14 WILD-TYPE 129 77 67 191
'SIGLEC14 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.588 (Fisher's exact test), Q value = 0.89

Table S22961.  Gene #2195: 'SIGLEC14 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
SIGLEC14 MUTATED 0 2 0 2 3 1 0 0 0
SIGLEC14 WILD-TYPE 40 60 28 78 66 47 43 28 74
'SIGLEC14 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.137 (Fisher's exact test), Q value = 0.41

Table S22962.  Gene #2195: 'SIGLEC14 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
SIGLEC14 MUTATED 1 0 0 2
SIGLEC14 WILD-TYPE 32 31 27 17
'SIGLEC14 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.695 (Fisher's exact test), Q value = 0.97

Table S22963.  Gene #2195: 'SIGLEC14 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
SIGLEC14 MUTATED 1 0 1 1
SIGLEC14 WILD-TYPE 53 10 23 21
'CALCR MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.118 (Fisher's exact test), Q value = 0.38

Table S22964.  Gene #2196: 'CALCR MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
CALCR MUTATED 1 1 0 3
CALCR WILD-TYPE 45 57 64 40
'CALCR MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.738 (Fisher's exact test), Q value = 1

Table S22965.  Gene #2196: 'CALCR MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
CALCR MUTATED 2 2 1
CALCR WILD-TYPE 49 81 76
'CALCR MUTATION STATUS' versus 'CN_CNMF'

P value = 0.483 (Fisher's exact test), Q value = 0.81

Table S22966.  Gene #2196: 'CALCR MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
CALCR MUTATED 7 4 1 0
CALCR WILD-TYPE 171 179 100 20
'CALCR MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.345 (Fisher's exact test), Q value = 0.67

Table S22967.  Gene #2196: 'CALCR MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
CALCR MUTATED 4 2 1
CALCR WILD-TYPE 83 78 99
'CALCR MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0906 (Fisher's exact test), Q value = 0.33

Table S22968.  Gene #2196: 'CALCR MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
CALCR MUTATED 3 8 1
CALCR WILD-TYPE 86 152 137
'CALCR MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.503 (Fisher's exact test), Q value = 0.83

Table S22969.  Gene #2196: 'CALCR MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
CALCR MUTATED 4 6 2
CALCR WILD-TYPE 178 127 70
'CALCR MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.808 (Fisher's exact test), Q value = 1

Table S22970.  Gene #2196: 'CALCR MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
CALCR MUTATED 3 1 2 6
CALCR WILD-TYPE 109 95 90 180
'CALCR MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.735 (Fisher's exact test), Q value = 1

Table S22971.  Gene #2196: 'CALCR MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
CALCR MUTATED 2 0 1 2 2 2 3
CALCR WILD-TYPE 58 50 48 38 61 123 96
'CALCR MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.526 (Fisher's exact test), Q value = 0.85

Table S22972.  Gene #2196: 'CALCR MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
CALCR MUTATED 3 4 1 4
CALCR WILD-TYPE 127 74 67 192
'CALCR MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.839 (Fisher's exact test), Q value = 1

Table S22973.  Gene #2196: 'CALCR MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
CALCR MUTATED 1 2 1 3 3 0 0 0 2
CALCR WILD-TYPE 39 60 27 77 66 48 43 28 72
'CALCR MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0819 (Fisher's exact test), Q value = 0.31

Table S22974.  Gene #2196: 'CALCR MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
CALCR MUTATED 0 3 0 1
CALCR WILD-TYPE 33 28 27 18
'CALCR MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.268 (Fisher's exact test), Q value = 0.59

Table S22975.  Gene #2196: 'CALCR MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
CALCR MUTATED 1 1 1 1
CALCR WILD-TYPE 53 9 23 21
'TXNRD1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0653 (Fisher's exact test), Q value = 0.28

Table S22976.  Gene #2197: 'TXNRD1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
TXNRD1 MUTATED 1 0 0 2
TXNRD1 WILD-TYPE 45 58 64 41
'TXNRD1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.254 (Fisher's exact test), Q value = 0.58

Table S22977.  Gene #2197: 'TXNRD1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
TXNRD1 MUTATED 2 1 0
TXNRD1 WILD-TYPE 49 82 77
'TXNRD1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.126 (Fisher's exact test), Q value = 0.39

Table S22978.  Gene #2197: 'TXNRD1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
TXNRD1 MUTATED 7 1 1 0
TXNRD1 WILD-TYPE 171 182 100 20
'TXNRD1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.141 (Fisher's exact test), Q value = 0.42

Table S22979.  Gene #2197: 'TXNRD1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
TXNRD1 MUTATED 4 0 2
TXNRD1 WILD-TYPE 83 80 98
'TXNRD1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00484 (Fisher's exact test), Q value = 0.063

Table S22980.  Gene #2197: 'TXNRD1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
TXNRD1 MUTATED 0 0 6
TXNRD1 WILD-TYPE 89 160 132

Figure S5501.  Get High-res Image Gene #2197: 'TXNRD1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'TXNRD1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.339 (Fisher's exact test), Q value = 0.67

Table S22981.  Gene #2197: 'TXNRD1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
TXNRD1 MUTATED 5 1 0
TXNRD1 WILD-TYPE 177 132 72
'TXNRD1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0445 (Fisher's exact test), Q value = 0.22

Table S22982.  Gene #2197: 'TXNRD1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
TXNRD1 MUTATED 1 0 5 3
TXNRD1 WILD-TYPE 111 96 87 183

Figure S5502.  Get High-res Image Gene #2197: 'TXNRD1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'TXNRD1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.02 (Fisher's exact test), Q value = 0.14

Table S22983.  Gene #2197: 'TXNRD1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
TXNRD1 MUTATED 1 0 4 0 1 0 3
TXNRD1 WILD-TYPE 59 50 45 40 62 125 96

Figure S5503.  Get High-res Image Gene #2197: 'TXNRD1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'TXNRD1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.122 (Fisher's exact test), Q value = 0.39

Table S22984.  Gene #2197: 'TXNRD1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
TXNRD1 MUTATED 2 3 2 1
TXNRD1 WILD-TYPE 128 75 66 195
'TXNRD1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.862 (Fisher's exact test), Q value = 1

Table S22985.  Gene #2197: 'TXNRD1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
TXNRD1 MUTATED 0 3 0 1 1 1 1 0 1
TXNRD1 WILD-TYPE 40 59 28 79 68 47 42 28 73
'TXNRD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0236 (Fisher's exact test), Q value = 0.16

Table S22986.  Gene #2197: 'TXNRD1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
TXNRD1 MUTATED 2 0 0 3
TXNRD1 WILD-TYPE 31 31 27 16

Figure S5504.  Get High-res Image Gene #2197: 'TXNRD1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'TXNRD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.635 (Fisher's exact test), Q value = 0.93

Table S22987.  Gene #2197: 'TXNRD1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
TXNRD1 MUTATED 4 0 0 1
TXNRD1 WILD-TYPE 50 10 24 21
'ZFP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.122 (Fisher's exact test), Q value = 0.39

Table S22988.  Gene #2198: 'ZFP1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ZFP1 MUTATED 4 0 0 0
ZFP1 WILD-TYPE 174 183 101 20
'ZFP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.696 (Fisher's exact test), Q value = 0.97

Table S22989.  Gene #2198: 'ZFP1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ZFP1 MUTATED 1 0 0 3
ZFP1 WILD-TYPE 111 96 92 183
'ZFP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.169 (Fisher's exact test), Q value = 0.46

Table S22990.  Gene #2198: 'ZFP1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ZFP1 MUTATED 0 1 0 0 0 0 3
ZFP1 WILD-TYPE 60 49 49 40 63 125 96
'ZFP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.821 (Fisher's exact test), Q value = 1

Table S22991.  Gene #2198: 'ZFP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ZFP1 MUTATED 1 0 0 3
ZFP1 WILD-TYPE 129 78 68 193
'ZFP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.431 (Fisher's exact test), Q value = 0.76

Table S22992.  Gene #2198: 'ZFP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ZFP1 MUTATED 1 0 1 0 1 0 0 0 1
ZFP1 WILD-TYPE 39 62 27 80 68 48 43 28 73
'FAM199X MUTATION STATUS' versus 'CN_CNMF'

P value = 0.395 (Fisher's exact test), Q value = 0.72

Table S22993.  Gene #2199: 'FAM199X MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
FAM199X MUTATED 4 2 4 0
FAM199X WILD-TYPE 174 181 97 20
'FAM199X MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.82 (Fisher's exact test), Q value = 1

Table S22994.  Gene #2199: 'FAM199X MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
FAM199X MUTATED 2 2 4
FAM199X WILD-TYPE 85 78 96
'FAM199X MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.384 (Fisher's exact test), Q value = 0.71

Table S22995.  Gene #2199: 'FAM199X MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
FAM199X MUTATED 1 2 5
FAM199X WILD-TYPE 88 158 133
'FAM199X MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.287 (Fisher's exact test), Q value = 0.62

Table S22996.  Gene #2199: 'FAM199X MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
FAM199X MUTATED 6 2 0
FAM199X WILD-TYPE 176 131 72
'FAM199X MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.53 (Fisher's exact test), Q value = 0.85

Table S22997.  Gene #2199: 'FAM199X MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
FAM199X MUTATED 3 2 3 2
FAM199X WILD-TYPE 109 94 89 184
'FAM199X MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.37 (Fisher's exact test), Q value = 0.7

Table S22998.  Gene #2199: 'FAM199X MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
FAM199X MUTATED 2 2 2 0 2 1 1
FAM199X WILD-TYPE 58 48 47 40 61 124 98
'FAM199X MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0834 (Fisher's exact test), Q value = 0.31

Table S22999.  Gene #2199: 'FAM199X MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
FAM199X MUTATED 6 2 0 2
FAM199X WILD-TYPE 124 76 68 194
'FAM199X MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.12 (Fisher's exact test), Q value = 0.39

Table S23000.  Gene #2199: 'FAM199X MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
FAM199X MUTATED 0 3 1 3 1 0 0 2 0
FAM199X WILD-TYPE 40 59 27 77 68 48 43 26 74
'FAM199X MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.873 (Fisher's exact test), Q value = 1

Table S23001.  Gene #2199: 'FAM199X MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
FAM199X MUTATED 1 1 0 1
FAM199X WILD-TYPE 32 30 27 18
'FAM199X MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.315 (Fisher's exact test), Q value = 0.64

Table S23002.  Gene #2199: 'FAM199X MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
FAM199X MUTATED 1 1 1 0
FAM199X WILD-TYPE 53 9 23 22
'GABRB2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.029 (Fisher's exact test), Q value = 0.17

Table S23003.  Gene #2200: 'GABRB2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
GABRB2 MUTATED 1 1 0 4
GABRB2 WILD-TYPE 45 57 64 39

Figure S5505.  Get High-res Image Gene #2200: 'GABRB2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'GABRB2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.39 (Fisher's exact test), Q value = 0.72

Table S23004.  Gene #2200: 'GABRB2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
GABRB2 MUTATED 1 1 4
GABRB2 WILD-TYPE 50 82 73
'GABRB2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.152 (Fisher's exact test), Q value = 0.44

Table S23005.  Gene #2200: 'GABRB2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
GABRB2 MUTATED 7 1 2 0
GABRB2 WILD-TYPE 171 182 99 20
'GABRB2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.515 (Fisher's exact test), Q value = 0.84

Table S23006.  Gene #2200: 'GABRB2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
GABRB2 MUTATED 2 0 1
GABRB2 WILD-TYPE 85 80 99
'GABRB2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.382 (Fisher's exact test), Q value = 0.71

Table S23007.  Gene #2200: 'GABRB2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
GABRB2 MUTATED 4 4 2
GABRB2 WILD-TYPE 85 156 136
'GABRB2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.4 (Fisher's exact test), Q value = 0.73

Table S23008.  Gene #2200: 'GABRB2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
GABRB2 MUTATED 3 4 3
GABRB2 WILD-TYPE 179 129 69
'GABRB2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.285 (Fisher's exact test), Q value = 0.61

Table S23009.  Gene #2200: 'GABRB2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
GABRB2 MUTATED 0 3 2 5
GABRB2 WILD-TYPE 112 93 90 181
'GABRB2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.207 (Fisher's exact test), Q value = 0.51

Table S23010.  Gene #2200: 'GABRB2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
GABRB2 MUTATED 1 0 3 2 0 2 2
GABRB2 WILD-TYPE 59 50 46 38 63 123 97
'GABRB2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.594 (Fisher's exact test), Q value = 0.9

Table S23011.  Gene #2200: 'GABRB2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
GABRB2 MUTATED 1 2 1 6
GABRB2 WILD-TYPE 129 76 67 190
'GABRB2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.238 (Fisher's exact test), Q value = 0.56

Table S23012.  Gene #2200: 'GABRB2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
GABRB2 MUTATED 0 2 1 0 4 1 0 1 1
GABRB2 WILD-TYPE 40 60 27 80 65 47 43 27 73
'GABRB2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0848 (Fisher's exact test), Q value = 0.31

Table S23013.  Gene #2200: 'GABRB2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
GABRB2 MUTATED 0 1 0 2
GABRB2 WILD-TYPE 33 30 27 17
'GABRB2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S23014.  Gene #2200: 'GABRB2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
GABRB2 MUTATED 2 0 1 0
GABRB2 WILD-TYPE 52 10 23 22
'NAA15 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0745 (Fisher's exact test), Q value = 0.29

Table S23015.  Gene #2201: 'NAA15 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
NAA15 MUTATED 2 0 0 2
NAA15 WILD-TYPE 44 58 64 41
'NAA15 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0608 (Fisher's exact test), Q value = 0.27

Table S23016.  Gene #2201: 'NAA15 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
NAA15 MUTATED 3 1 0
NAA15 WILD-TYPE 48 82 77
'NAA15 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0066 (Fisher's exact test), Q value = 0.074

Table S23017.  Gene #2201: 'NAA15 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
NAA15 MUTATED 12 1 2 0
NAA15 WILD-TYPE 166 182 99 20

Figure S5506.  Get High-res Image Gene #2201: 'NAA15 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'NAA15 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0948 (Fisher's exact test), Q value = 0.34

Table S23018.  Gene #2201: 'NAA15 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
NAA15 MUTATED 5 0 4
NAA15 WILD-TYPE 82 80 96
'NAA15 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00836 (Fisher's exact test), Q value = 0.085

Table S23019.  Gene #2201: 'NAA15 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
NAA15 MUTATED 0 4 10
NAA15 WILD-TYPE 89 156 128

Figure S5507.  Get High-res Image Gene #2201: 'NAA15 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'NAA15 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.634 (Fisher's exact test), Q value = 0.93

Table S23020.  Gene #2201: 'NAA15 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
NAA15 MUTATED 8 5 1
NAA15 WILD-TYPE 174 128 71
'NAA15 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.237 (Fisher's exact test), Q value = 0.56

Table S23021.  Gene #2201: 'NAA15 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
NAA15 MUTATED 1 4 5 5
NAA15 WILD-TYPE 111 92 87 181
'NAA15 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00886 (Fisher's exact test), Q value = 0.088

Table S23022.  Gene #2201: 'NAA15 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
NAA15 MUTATED 1 2 5 0 2 0 5
NAA15 WILD-TYPE 59 48 44 40 61 125 94

Figure S5508.  Get High-res Image Gene #2201: 'NAA15 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'NAA15 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.889 (Fisher's exact test), Q value = 1

Table S23023.  Gene #2201: 'NAA15 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
NAA15 MUTATED 4 3 1 6
NAA15 WILD-TYPE 126 75 67 190
'NAA15 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00506 (Fisher's exact test), Q value = 0.064

Table S23024.  Gene #2201: 'NAA15 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
NAA15 MUTATED 0 3 3 0 6 0 0 0 2
NAA15 WILD-TYPE 40 59 25 80 63 48 43 28 72

Figure S5509.  Get High-res Image Gene #2201: 'NAA15 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'GNA15 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.527 (Fisher's exact test), Q value = 0.85

Table S23025.  Gene #2202: 'GNA15 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
GNA15 MUTATED 4 1 1 0
GNA15 WILD-TYPE 174 182 100 20
'GNA15 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.513 (Fisher's exact test), Q value = 0.83

Table S23026.  Gene #2202: 'GNA15 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
GNA15 MUTATED 2 0 1
GNA15 WILD-TYPE 85 80 99
'GNA15 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.545 (Fisher's exact test), Q value = 0.86

Table S23027.  Gene #2202: 'GNA15 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
GNA15 MUTATED 1 1 3
GNA15 WILD-TYPE 88 159 135
'GNA15 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.853 (Fisher's exact test), Q value = 1

Table S23028.  Gene #2202: 'GNA15 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
GNA15 MUTATED 3 1 1
GNA15 WILD-TYPE 179 132 71
'GNA15 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.842 (Fisher's exact test), Q value = 1

Table S23029.  Gene #2202: 'GNA15 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
GNA15 MUTATED 1 1 2 2
GNA15 WILD-TYPE 111 95 90 184
'GNA15 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.186 (Fisher's exact test), Q value = 0.49

Table S23030.  Gene #2202: 'GNA15 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
GNA15 MUTATED 1 1 2 0 0 0 2
GNA15 WILD-TYPE 59 49 47 40 63 125 97
'GNA15 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.378 (Fisher's exact test), Q value = 0.71

Table S23031.  Gene #2202: 'GNA15 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
GNA15 MUTATED 1 2 1 1
GNA15 WILD-TYPE 129 76 67 195
'GNA15 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.525 (Fisher's exact test), Q value = 0.85

Table S23032.  Gene #2202: 'GNA15 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
GNA15 MUTATED 0 2 1 0 1 0 0 0 1
GNA15 WILD-TYPE 40 60 27 80 68 48 43 28 73
'ZNF274 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.72 (Fisher's exact test), Q value = 0.99

Table S23033.  Gene #2203: 'ZNF274 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ZNF274 MUTATED 4 2 1 0
ZNF274 WILD-TYPE 174 181 100 20
'ZNF274 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.329 (Fisher's exact test), Q value = 0.66

Table S23034.  Gene #2203: 'ZNF274 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ZNF274 MUTATED 3 0 2
ZNF274 WILD-TYPE 84 80 98
'ZNF274 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0293 (Fisher's exact test), Q value = 0.17

Table S23035.  Gene #2203: 'ZNF274 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ZNF274 MUTATED 1 0 5
ZNF274 WILD-TYPE 88 160 133

Figure S5510.  Get High-res Image Gene #2203: 'ZNF274 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'ZNF274 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.759 (Fisher's exact test), Q value = 1

Table S23036.  Gene #2203: 'ZNF274 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ZNF274 MUTATED 4 1 1
ZNF274 WILD-TYPE 178 132 71
'ZNF274 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.193 (Fisher's exact test), Q value = 0.5

Table S23037.  Gene #2203: 'ZNF274 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ZNF274 MUTATED 0 3 2 2
ZNF274 WILD-TYPE 112 93 90 184
'ZNF274 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.501 (Fisher's exact test), Q value = 0.83

Table S23038.  Gene #2203: 'ZNF274 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ZNF274 MUTATED 0 1 2 1 1 1 1
ZNF274 WILD-TYPE 60 49 47 39 62 124 98
'ZNF274 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.67 (Fisher's exact test), Q value = 0.95

Table S23039.  Gene #2203: 'ZNF274 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ZNF274 MUTATED 1 2 1 2
ZNF274 WILD-TYPE 129 76 67 194
'ZNF274 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.579 (Fisher's exact test), Q value = 0.88

Table S23040.  Gene #2203: 'ZNF274 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ZNF274 MUTATED 0 2 0 0 2 0 0 0 2
ZNF274 WILD-TYPE 40 60 28 80 67 48 43 28 72
'ZNF274 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.872 (Fisher's exact test), Q value = 1

Table S23041.  Gene #2203: 'ZNF274 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
ZNF274 MUTATED 1 1 0 1
ZNF274 WILD-TYPE 32 30 27 18
'ZNF274 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S23042.  Gene #2203: 'ZNF274 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
ZNF274 MUTATED 2 0 1 0
ZNF274 WILD-TYPE 52 10 23 22
'ZNF763 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.274 (Fisher's exact test), Q value = 0.6

Table S23043.  Gene #2204: 'ZNF763 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ZNF763 MUTATED 2 0 1 0
ZNF763 WILD-TYPE 44 58 63 43
'ZNF763 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S23044.  Gene #2204: 'ZNF763 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ZNF763 MUTATED 1 1 1
ZNF763 WILD-TYPE 50 82 76
'ZNF763 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.409 (Fisher's exact test), Q value = 0.74

Table S23045.  Gene #2204: 'ZNF763 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ZNF763 MUTATED 7 3 1 0
ZNF763 WILD-TYPE 171 180 100 20
'ZNF763 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.396 (Fisher's exact test), Q value = 0.72

Table S23046.  Gene #2204: 'ZNF763 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ZNF763 MUTATED 2 1 5
ZNF763 WILD-TYPE 85 79 95
'ZNF763 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.514 (Fisher's exact test), Q value = 0.84

Table S23047.  Gene #2204: 'ZNF763 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ZNF763 MUTATED 1 3 5
ZNF763 WILD-TYPE 88 157 133
'ZNF763 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.165 (Fisher's exact test), Q value = 0.46

Table S23048.  Gene #2204: 'ZNF763 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ZNF763 MUTATED 7 2 0
ZNF763 WILD-TYPE 175 131 72
'ZNF763 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.464 (Fisher's exact test), Q value = 0.79

Table S23049.  Gene #2204: 'ZNF763 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ZNF763 MUTATED 1 2 4 4
ZNF763 WILD-TYPE 111 94 88 182
'ZNF763 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.61 (Fisher's exact test), Q value = 0.91

Table S23050.  Gene #2204: 'ZNF763 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ZNF763 MUTATED 2 1 3 0 1 2 2
ZNF763 WILD-TYPE 58 49 46 40 62 123 97
'ZNF763 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.417 (Fisher's exact test), Q value = 0.74

Table S23051.  Gene #2204: 'ZNF763 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ZNF763 MUTATED 5 1 0 5
ZNF763 WILD-TYPE 125 77 68 191
'ZNF763 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.832 (Fisher's exact test), Q value = 1

Table S23052.  Gene #2204: 'ZNF763 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ZNF763 MUTATED 1 1 0 2 4 1 0 0 2
ZNF763 WILD-TYPE 39 61 28 78 65 47 43 28 72
'ZNF763 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.137 (Fisher's exact test), Q value = 0.41

Table S23053.  Gene #2204: 'ZNF763 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
ZNF763 MUTATED 1 0 0 2
ZNF763 WILD-TYPE 32 31 27 17
'ZNF763 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.695 (Fisher's exact test), Q value = 0.97

Table S23054.  Gene #2204: 'ZNF763 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
ZNF763 MUTATED 1 0 1 1
ZNF763 WILD-TYPE 53 10 23 21
'PRKRIR MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.63 (Fisher's exact test), Q value = 0.93

Table S23055.  Gene #2205: 'PRKRIR MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
PRKRIR MUTATED 1 1 0 1
PRKRIR WILD-TYPE 45 57 64 42
'PRKRIR MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.788 (Fisher's exact test), Q value = 1

Table S23056.  Gene #2205: 'PRKRIR MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
PRKRIR MUTATED 0 2 1
PRKRIR WILD-TYPE 51 81 76
'PRKRIR MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0509 (Fisher's exact test), Q value = 0.24

Table S23057.  Gene #2205: 'PRKRIR MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
PRKRIR MUTATED 9 3 0 0
PRKRIR WILD-TYPE 169 180 101 20
'PRKRIR MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.396 (Fisher's exact test), Q value = 0.72

Table S23058.  Gene #2205: 'PRKRIR MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
PRKRIR MUTATED 2 1 5
PRKRIR WILD-TYPE 85 79 95
'PRKRIR MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.173 (Fisher's exact test), Q value = 0.47

Table S23059.  Gene #2205: 'PRKRIR MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
PRKRIR MUTATED 0 6 3
PRKRIR WILD-TYPE 89 154 135
'PRKRIR MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.109 (Fisher's exact test), Q value = 0.36

Table S23060.  Gene #2205: 'PRKRIR MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
PRKRIR MUTATED 3 6 0
PRKRIR WILD-TYPE 179 127 72
'PRKRIR MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.082 (Fisher's exact test), Q value = 0.31

Table S23061.  Gene #2205: 'PRKRIR MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
PRKRIR MUTATED 2 6 2 2
PRKRIR WILD-TYPE 110 90 90 184
'PRKRIR MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0261 (Fisher's exact test), Q value = 0.16

Table S23062.  Gene #2205: 'PRKRIR MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
PRKRIR MUTATED 0 2 5 1 0 2 2
PRKRIR WILD-TYPE 60 48 44 39 63 123 97

Figure S5511.  Get High-res Image Gene #2205: 'PRKRIR MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'PRKRIR MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.65 (Fisher's exact test), Q value = 0.94

Table S23063.  Gene #2205: 'PRKRIR MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
PRKRIR MUTATED 5 1 2 4
PRKRIR WILD-TYPE 125 77 66 192
'PRKRIR MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.341 (Fisher's exact test), Q value = 0.67

Table S23064.  Gene #2205: 'PRKRIR MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
PRKRIR MUTATED 2 3 0 0 2 0 2 1 2
PRKRIR WILD-TYPE 38 59 28 80 67 48 41 27 72
'PKIA MUTATION STATUS' versus 'CN_CNMF'

P value = 0.152 (Fisher's exact test), Q value = 0.44

Table S23065.  Gene #2206: 'PKIA MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
PKIA MUTATED 7 1 2 0
PKIA WILD-TYPE 171 182 99 20
'PKIA MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.178 (Fisher's exact test), Q value = 0.48

Table S23066.  Gene #2206: 'PKIA MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
PKIA MUTATED 1 2 6
PKIA WILD-TYPE 86 78 94
'PKIA MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.265 (Fisher's exact test), Q value = 0.59

Table S23067.  Gene #2206: 'PKIA MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
PKIA MUTATED 2 1 4
PKIA WILD-TYPE 87 159 134
'PKIA MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.886 (Fisher's exact test), Q value = 1

Table S23068.  Gene #2206: 'PKIA MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
PKIA MUTATED 3 3 1
PKIA WILD-TYPE 179 130 71
'PKIA MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.131 (Fisher's exact test), Q value = 0.4

Table S23069.  Gene #2206: 'PKIA MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
PKIA MUTATED 3 4 2 1
PKIA WILD-TYPE 109 92 90 185
'PKIA MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0864 (Fisher's exact test), Q value = 0.32

Table S23070.  Gene #2206: 'PKIA MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
PKIA MUTATED 1 2 3 1 2 1 0
PKIA WILD-TYPE 59 48 46 39 61 124 99
'PKIA MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.31 (Fisher's exact test), Q value = 0.64

Table S23071.  Gene #2206: 'PKIA MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
PKIA MUTATED 5 2 1 2
PKIA WILD-TYPE 125 76 67 194
'PKIA MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.673 (Fisher's exact test), Q value = 0.95

Table S23072.  Gene #2206: 'PKIA MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
PKIA MUTATED 0 2 0 2 3 1 1 1 0
PKIA WILD-TYPE 40 60 28 78 66 47 42 27 74
'PKIA MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.255 (Fisher's exact test), Q value = 0.58

Table S23073.  Gene #2206: 'PKIA MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
PKIA MUTATED 2 0 0 1
PKIA WILD-TYPE 31 31 27 18
'PKIA MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.696 (Fisher's exact test), Q value = 0.97

Table S23074.  Gene #2206: 'PKIA MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
PKIA MUTATED 1 0 1 1
PKIA WILD-TYPE 53 10 23 21
'SYNJ1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00265 (Fisher's exact test), Q value = 0.045

Table S23075.  Gene #2207: 'SYNJ1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
SYNJ1 MUTATED 4 0 0 4
SYNJ1 WILD-TYPE 42 58 64 39

Figure S5512.  Get High-res Image Gene #2207: 'SYNJ1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'SYNJ1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.313 (Fisher's exact test), Q value = 0.64

Table S23076.  Gene #2207: 'SYNJ1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
SYNJ1 MUTATED 4 2 2
SYNJ1 WILD-TYPE 47 81 75
'SYNJ1 MUTATION STATUS' versus 'CN_CNMF'

P value = 9e-05 (Fisher's exact test), Q value = 0.0048

Table S23077.  Gene #2207: 'SYNJ1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
SYNJ1 MUTATED 16 2 0 1
SYNJ1 WILD-TYPE 162 181 101 19

Figure S5513.  Get High-res Image Gene #2207: 'SYNJ1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'SYNJ1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.741 (Fisher's exact test), Q value = 1

Table S23078.  Gene #2207: 'SYNJ1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
SYNJ1 MUTATED 4 2 5
SYNJ1 WILD-TYPE 83 78 95
'SYNJ1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.167 (Fisher's exact test), Q value = 0.46

Table S23079.  Gene #2207: 'SYNJ1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
SYNJ1 MUTATED 1 5 8
SYNJ1 WILD-TYPE 88 155 130
'SYNJ1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.88 (Fisher's exact test), Q value = 1

Table S23080.  Gene #2207: 'SYNJ1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
SYNJ1 MUTATED 7 4 3
SYNJ1 WILD-TYPE 175 129 69
'SYNJ1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.375 (Fisher's exact test), Q value = 0.7

Table S23081.  Gene #2207: 'SYNJ1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
SYNJ1 MUTATED 2 3 6 8
SYNJ1 WILD-TYPE 110 93 86 178
'SYNJ1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0796 (Fisher's exact test), Q value = 0.3

Table S23082.  Gene #2207: 'SYNJ1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
SYNJ1 MUTATED 2 1 5 2 2 1 6
SYNJ1 WILD-TYPE 58 49 44 38 61 124 93
'SYNJ1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.716 (Fisher's exact test), Q value = 0.99

Table S23083.  Gene #2207: 'SYNJ1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
SYNJ1 MUTATED 5 4 1 9
SYNJ1 WILD-TYPE 125 74 67 187
'SYNJ1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0726 (Fisher's exact test), Q value = 0.29

Table S23084.  Gene #2207: 'SYNJ1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
SYNJ1 MUTATED 1 4 2 1 6 1 3 1 0
SYNJ1 WILD-TYPE 39 58 26 79 63 47 40 27 74
'SYNJ1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0878 (Fisher's exact test), Q value = 0.32

Table S23085.  Gene #2207: 'SYNJ1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
SYNJ1 MUTATED 1 1 0 3
SYNJ1 WILD-TYPE 32 30 27 16
'SYNJ1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.757 (Fisher's exact test), Q value = 1

Table S23086.  Gene #2207: 'SYNJ1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
SYNJ1 MUTATED 4 0 1 0
SYNJ1 WILD-TYPE 50 10 23 22
'TEX14 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0552 (Fisher's exact test), Q value = 0.26

Table S23087.  Gene #2208: 'TEX14 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
TEX14 MUTATED 4 0 1 2
TEX14 WILD-TYPE 42 58 63 41
'TEX14 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0151 (Fisher's exact test), Q value = 0.12

Table S23088.  Gene #2208: 'TEX14 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
TEX14 MUTATED 5 1 1
TEX14 WILD-TYPE 46 82 76

Figure S5514.  Get High-res Image Gene #2208: 'TEX14 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'TEX14 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00538 (Fisher's exact test), Q value = 0.066

Table S23089.  Gene #2208: 'TEX14 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
TEX14 MUTATED 18 4 3 0
TEX14 WILD-TYPE 160 179 98 20

Figure S5515.  Get High-res Image Gene #2208: 'TEX14 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'TEX14 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.858 (Fisher's exact test), Q value = 1

Table S23090.  Gene #2208: 'TEX14 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
TEX14 MUTATED 6 4 7
TEX14 WILD-TYPE 81 76 93
'TEX14 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.235 (Fisher's exact test), Q value = 0.56

Table S23091.  Gene #2208: 'TEX14 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
TEX14 MUTATED 3 5 10
TEX14 WILD-TYPE 86 155 128
'TEX14 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.369 (Fisher's exact test), Q value = 0.7

Table S23092.  Gene #2208: 'TEX14 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
TEX14 MUTATED 10 7 1
TEX14 WILD-TYPE 172 126 71
'TEX14 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.796 (Fisher's exact test), Q value = 1

Table S23093.  Gene #2208: 'TEX14 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
TEX14 MUTATED 5 6 6 8
TEX14 WILD-TYPE 107 90 86 178
'TEX14 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.003 (Fisher's exact test), Q value = 0.049

Table S23094.  Gene #2208: 'TEX14 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
TEX14 MUTATED 4 5 7 1 1 1 6
TEX14 WILD-TYPE 56 45 42 39 62 124 93

Figure S5516.  Get High-res Image Gene #2208: 'TEX14 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'TEX14 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.347 (Fisher's exact test), Q value = 0.68

Table S23095.  Gene #2208: 'TEX14 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
TEX14 MUTATED 11 3 2 9
TEX14 WILD-TYPE 119 75 66 187
'TEX14 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.187 (Fisher's exact test), Q value = 0.49

Table S23096.  Gene #2208: 'TEX14 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
TEX14 MUTATED 5 6 0 3 5 1 1 2 2
TEX14 WILD-TYPE 35 56 28 77 64 47 42 26 72
'TEX14 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.27 (Fisher's exact test), Q value = 0.6

Table S23097.  Gene #2208: 'TEX14 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
TEX14 MUTATED 3 0 2 2
TEX14 WILD-TYPE 30 31 25 17
'TEX14 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.94 (Fisher's exact test), Q value = 1

Table S23098.  Gene #2208: 'TEX14 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
TEX14 MUTATED 4 0 1 2
TEX14 WILD-TYPE 50 10 23 20
'F9 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00597 (Fisher's exact test), Q value = 0.07

Table S23099.  Gene #2209: 'F9 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
F9 MUTATED 2 0 0 4
F9 WILD-TYPE 44 58 64 39

Figure S5517.  Get High-res Image Gene #2209: 'F9 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'F9 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0225 (Fisher's exact test), Q value = 0.15

Table S23100.  Gene #2209: 'F9 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
F9 MUTATED 4 2 0
F9 WILD-TYPE 47 81 77

Figure S5518.  Get High-res Image Gene #2209: 'F9 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'F9 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.037 (Fisher's exact test), Q value = 0.2

Table S23101.  Gene #2209: 'F9 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
F9 MUTATED 14 4 2 0
F9 WILD-TYPE 164 179 99 20

Figure S5519.  Get High-res Image Gene #2209: 'F9 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'F9 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.426 (Fisher's exact test), Q value = 0.75

Table S23102.  Gene #2209: 'F9 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
F9 MUTATED 7 3 4
F9 WILD-TYPE 80 77 96
'F9 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.897 (Fisher's exact test), Q value = 1

Table S23103.  Gene #2209: 'F9 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
F9 MUTATED 4 7 5
F9 WILD-TYPE 85 153 133
'F9 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.249 (Fisher's exact test), Q value = 0.58

Table S23104.  Gene #2209: 'F9 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
F9 MUTATED 8 3 5
F9 WILD-TYPE 174 130 67
'F9 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.977 (Fisher's exact test), Q value = 1

Table S23105.  Gene #2209: 'F9 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
F9 MUTATED 5 4 4 7
F9 WILD-TYPE 107 92 88 179
'F9 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.5 (Fisher's exact test), Q value = 0.83

Table S23106.  Gene #2209: 'F9 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
F9 MUTATED 3 2 4 1 3 2 5
F9 WILD-TYPE 57 48 45 39 60 123 94
'F9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.117 (Fisher's exact test), Q value = 0.38

Table S23107.  Gene #2209: 'F9 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
F9 MUTATED 3 7 3 6
F9 WILD-TYPE 127 71 65 190
'F9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.581 (Fisher's exact test), Q value = 0.89

Table S23108.  Gene #2209: 'F9 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
F9 MUTATED 2 3 1 3 4 3 2 1 0
F9 WILD-TYPE 38 59 27 77 65 45 41 27 74
'F9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.869 (Fisher's exact test), Q value = 1

Table S23109.  Gene #2209: 'F9 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
F9 MUTATED 2 2 1 2
F9 WILD-TYPE 31 29 26 17
'F9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.318 (Fisher's exact test), Q value = 0.65

Table S23110.  Gene #2209: 'F9 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
F9 MUTATED 2 0 2 3
F9 WILD-TYPE 52 10 22 19
'SMEK1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.164 (Fisher's exact test), Q value = 0.46

Table S23111.  Gene #2210: 'SMEK1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
SMEK1 MUTATED 5 1 2 1
SMEK1 WILD-TYPE 173 182 99 19
'SMEK1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.179 (Fisher's exact test), Q value = 0.48

Table S23112.  Gene #2210: 'SMEK1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
SMEK1 MUTATED 4 0 3
SMEK1 WILD-TYPE 83 80 97
'SMEK1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0778 (Fisher's exact test), Q value = 0.3

Table S23113.  Gene #2210: 'SMEK1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
SMEK1 MUTATED 0 1 5
SMEK1 WILD-TYPE 89 159 133
'SMEK1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.667 (Fisher's exact test), Q value = 0.95

Table S23114.  Gene #2210: 'SMEK1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
SMEK1 MUTATED 4 2 0
SMEK1 WILD-TYPE 178 131 72
'SMEK1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00653 (Fisher's exact test), Q value = 0.074

Table S23115.  Gene #2210: 'SMEK1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
SMEK1 MUTATED 0 3 5 1
SMEK1 WILD-TYPE 112 93 87 185

Figure S5520.  Get High-res Image Gene #2210: 'SMEK1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'SMEK1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.015 (Fisher's exact test), Q value = 0.12

Table S23116.  Gene #2210: 'SMEK1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
SMEK1 MUTATED 1 2 3 2 0 0 1
SMEK1 WILD-TYPE 59 48 46 38 63 125 98

Figure S5521.  Get High-res Image Gene #2210: 'SMEK1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'SMEK1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.804 (Fisher's exact test), Q value = 1

Table S23117.  Gene #2210: 'SMEK1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
SMEK1 MUTATED 4 1 1 3
SMEK1 WILD-TYPE 126 77 67 193
'SMEK1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.9 (Fisher's exact test), Q value = 1

Table S23118.  Gene #2210: 'SMEK1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
SMEK1 MUTATED 0 2 0 2 2 0 1 1 1
SMEK1 WILD-TYPE 40 60 28 78 67 48 42 27 73
'SMEK1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.269 (Fisher's exact test), Q value = 0.59

Table S23119.  Gene #2210: 'SMEK1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
SMEK1 MUTATED 1 0 1 2
SMEK1 WILD-TYPE 32 31 26 17
'SMEK1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.543 (Fisher's exact test), Q value = 0.86

Table S23120.  Gene #2210: 'SMEK1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
SMEK1 MUTATED 2 0 0 2
SMEK1 WILD-TYPE 52 10 24 20
'TSC1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0226 (Fisher's exact test), Q value = 0.15

Table S23121.  Gene #2211: 'TSC1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
TSC1 MUTATED 2 0 0 3
TSC1 WILD-TYPE 44 58 64 40

Figure S5522.  Get High-res Image Gene #2211: 'TSC1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'TSC1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.254 (Fisher's exact test), Q value = 0.58

Table S23122.  Gene #2211: 'TSC1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
TSC1 MUTATED 3 1 1
TSC1 WILD-TYPE 48 82 76
'TSC1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00355 (Fisher's exact test), Q value = 0.054

Table S23123.  Gene #2211: 'TSC1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
TSC1 MUTATED 12 1 1 0
TSC1 WILD-TYPE 166 182 100 20

Figure S5523.  Get High-res Image Gene #2211: 'TSC1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'TSC1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.176 (Fisher's exact test), Q value = 0.48

Table S23124.  Gene #2211: 'TSC1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
TSC1 MUTATED 1 2 6
TSC1 WILD-TYPE 86 78 94
'TSC1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.423 (Fisher's exact test), Q value = 0.75

Table S23125.  Gene #2211: 'TSC1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
TSC1 MUTATED 1 5 6
TSC1 WILD-TYPE 88 155 132
'TSC1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.196 (Fisher's exact test), Q value = 0.5

Table S23126.  Gene #2211: 'TSC1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
TSC1 MUTATED 8 4 0
TSC1 WILD-TYPE 174 129 72
'TSC1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.458 (Fisher's exact test), Q value = 0.79

Table S23127.  Gene #2211: 'TSC1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
TSC1 MUTATED 2 2 5 5
TSC1 WILD-TYPE 110 94 87 181
'TSC1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0947 (Fisher's exact test), Q value = 0.34

Table S23128.  Gene #2211: 'TSC1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
TSC1 MUTATED 2 1 5 1 1 1 3
TSC1 WILD-TYPE 58 49 44 39 62 124 96
'TSC1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0264 (Fisher's exact test), Q value = 0.16

Table S23129.  Gene #2211: 'TSC1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
TSC1 MUTATED 8 0 0 5
TSC1 WILD-TYPE 122 78 68 191

Figure S5524.  Get High-res Image Gene #2211: 'TSC1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'TSC1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.193 (Fisher's exact test), Q value = 0.5

Table S23130.  Gene #2211: 'TSC1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
TSC1 MUTATED 2 2 0 3 5 0 1 0 0
TSC1 WILD-TYPE 38 60 28 77 64 48 42 28 74
'TSC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00401 (Fisher's exact test), Q value = 0.058

Table S23131.  Gene #2211: 'TSC1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
TSC1 MUTATED 0 0 0 3
TSC1 WILD-TYPE 33 31 27 16

Figure S5525.  Get High-res Image Gene #2211: 'TSC1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'TSC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.561 (Fisher's exact test), Q value = 0.87

Table S23132.  Gene #2211: 'TSC1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
TSC1 MUTATED 3 0 0 0
TSC1 WILD-TYPE 51 10 24 22
'HPCA MUTATION STATUS' versus 'CN_CNMF'

P value = 0.179 (Fisher's exact test), Q value = 0.48

Table S23133.  Gene #2212: 'HPCA MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
HPCA MUTATED 5 1 0 0
HPCA WILD-TYPE 173 182 101 20
'HPCA MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.195 (Fisher's exact test), Q value = 0.5

Table S23134.  Gene #2212: 'HPCA MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
HPCA MUTATED 1 0 4
HPCA WILD-TYPE 86 80 96
'HPCA MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0938 (Fisher's exact test), Q value = 0.34

Table S23135.  Gene #2212: 'HPCA MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
HPCA MUTATED 1 5 0
HPCA WILD-TYPE 88 155 138
'HPCA MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.858 (Fisher's exact test), Q value = 1

Table S23136.  Gene #2212: 'HPCA MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
HPCA MUTATED 2 3 1
HPCA WILD-TYPE 180 130 71
'HPCA MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.888 (Fisher's exact test), Q value = 1

Table S23137.  Gene #2212: 'HPCA MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
HPCA MUTATED 1 2 1 2
HPCA WILD-TYPE 111 94 91 184
'HPCA MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.185 (Fisher's exact test), Q value = 0.49

Table S23138.  Gene #2212: 'HPCA MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
HPCA MUTATED 1 1 2 0 0 0 2
HPCA WILD-TYPE 59 49 47 40 63 125 97
'HPCA MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.26 (Fisher's exact test), Q value = 0.58

Table S23139.  Gene #2212: 'HPCA MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
HPCA MUTATED 4 0 0 2
HPCA WILD-TYPE 126 78 68 194
'HPCA MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.879 (Fisher's exact test), Q value = 1

Table S23140.  Gene #2212: 'HPCA MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
HPCA MUTATED 0 1 1 1 2 0 0 0 1
HPCA WILD-TYPE 40 61 27 79 67 48 43 28 73
'EIF2B3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.152 (Fisher's exact test), Q value = 0.44

Table S23141.  Gene #2213: 'EIF2B3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
EIF2B3 MUTATED 4 0 2 0
EIF2B3 WILD-TYPE 174 183 99 20
'EIF2B3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.153 (Fisher's exact test), Q value = 0.44

Table S23142.  Gene #2213: 'EIF2B3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
EIF2B3 MUTATED 3 1 0
EIF2B3 WILD-TYPE 84 79 100
'EIF2B3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.545 (Fisher's exact test), Q value = 0.86

Table S23143.  Gene #2213: 'EIF2B3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
EIF2B3 MUTATED 1 1 3
EIF2B3 WILD-TYPE 88 159 135
'EIF2B3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.718 (Fisher's exact test), Q value = 0.99

Table S23144.  Gene #2213: 'EIF2B3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
EIF2B3 MUTATED 3 2 0
EIF2B3 WILD-TYPE 179 131 72
'EIF2B3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.842 (Fisher's exact test), Q value = 1

Table S23145.  Gene #2213: 'EIF2B3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
EIF2B3 MUTATED 1 1 2 2
EIF2B3 WILD-TYPE 111 95 90 184
'EIF2B3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.513 (Fisher's exact test), Q value = 0.83

Table S23146.  Gene #2213: 'EIF2B3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
EIF2B3 MUTATED 0 1 2 0 1 1 1
EIF2B3 WILD-TYPE 60 49 47 40 62 124 98
'EIF2B3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0814 (Fisher's exact test), Q value = 0.31

Table S23147.  Gene #2213: 'EIF2B3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
EIF2B3 MUTATED 0 3 0 3
EIF2B3 WILD-TYPE 130 75 68 193
'EIF2B3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.114 (Fisher's exact test), Q value = 0.37

Table S23148.  Gene #2213: 'EIF2B3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
EIF2B3 MUTATED 0 3 0 0 0 0 0 1 2
EIF2B3 WILD-TYPE 40 59 28 80 69 48 43 27 72
'EIF2B3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.871 (Fisher's exact test), Q value = 1

Table S23149.  Gene #2213: 'EIF2B3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
EIF2B3 MUTATED 1 1 0 1
EIF2B3 WILD-TYPE 32 30 27 18
'EIF2B3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.378 (Fisher's exact test), Q value = 0.71

Table S23150.  Gene #2213: 'EIF2B3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
EIF2B3 MUTATED 2 1 0 0
EIF2B3 WILD-TYPE 52 9 24 22
'LRIG1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0509 (Fisher's exact test), Q value = 0.24

Table S23151.  Gene #2214: 'LRIG1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
LRIG1 MUTATED 0 0 1 3
LRIG1 WILD-TYPE 46 58 63 40
'LRIG1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S23152.  Gene #2214: 'LRIG1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
LRIG1 MUTATED 1 2 1
LRIG1 WILD-TYPE 50 81 76
'LRIG1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.202 (Fisher's exact test), Q value = 0.51

Table S23153.  Gene #2214: 'LRIG1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
LRIG1 MUTATED 9 3 2 1
LRIG1 WILD-TYPE 169 180 99 19
'LRIG1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.308 (Fisher's exact test), Q value = 0.64

Table S23154.  Gene #2214: 'LRIG1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
LRIG1 MUTATED 5 1 4
LRIG1 WILD-TYPE 82 79 96
'LRIG1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.476 (Fisher's exact test), Q value = 0.8

Table S23155.  Gene #2214: 'LRIG1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
LRIG1 MUTATED 3 4 7
LRIG1 WILD-TYPE 86 156 131
'LRIG1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.157 (Fisher's exact test), Q value = 0.45

Table S23156.  Gene #2214: 'LRIG1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
LRIG1 MUTATED 8 6 0
LRIG1 WILD-TYPE 174 127 72
'LRIG1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.236 (Fisher's exact test), Q value = 0.56

Table S23157.  Gene #2214: 'LRIG1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
LRIG1 MUTATED 1 4 5 5
LRIG1 WILD-TYPE 111 92 87 181
'LRIG1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0454 (Fisher's exact test), Q value = 0.23

Table S23158.  Gene #2214: 'LRIG1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
LRIG1 MUTATED 2 1 6 0 1 2 3
LRIG1 WILD-TYPE 58 49 43 40 62 123 96

Figure S5526.  Get High-res Image Gene #2214: 'LRIG1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'LRIG1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.359 (Fisher's exact test), Q value = 0.69

Table S23159.  Gene #2214: 'LRIG1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
LRIG1 MUTATED 6 2 0 7
LRIG1 WILD-TYPE 124 76 68 189
'LRIG1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0523 (Fisher's exact test), Q value = 0.25

Table S23160.  Gene #2214: 'LRIG1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
LRIG1 MUTATED 1 2 3 2 6 0 0 0 1
LRIG1 WILD-TYPE 39 60 25 78 63 48 43 28 73
'LRIG1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0953 (Fisher's exact test), Q value = 0.34

Table S23161.  Gene #2214: 'LRIG1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
LRIG1 MUTATED 2 0 0 2
LRIG1 WILD-TYPE 31 31 27 17
'LRIG1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.672 (Fisher's exact test), Q value = 0.95

Table S23162.  Gene #2214: 'LRIG1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
LRIG1 MUTATED 2 0 2 0
LRIG1 WILD-TYPE 52 10 22 22
'SEC14L1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0637 (Fisher's exact test), Q value = 0.27

Table S23163.  Gene #2215: 'SEC14L1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
SEC14L1 MUTATED 1 0 0 2
SEC14L1 WILD-TYPE 45 58 64 41
'SEC14L1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.183 (Fisher's exact test), Q value = 0.48

Table S23164.  Gene #2215: 'SEC14L1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
SEC14L1 MUTATED 2 0 1
SEC14L1 WILD-TYPE 49 83 76
'SEC14L1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0584 (Fisher's exact test), Q value = 0.26

Table S23165.  Gene #2215: 'SEC14L1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
SEC14L1 MUTATED 8 2 0 0
SEC14L1 WILD-TYPE 170 181 101 20
'SEC14L1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.638 (Fisher's exact test), Q value = 0.93

Table S23166.  Gene #2215: 'SEC14L1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
SEC14L1 MUTATED 2 1 4
SEC14L1 WILD-TYPE 85 79 96
'SEC14L1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0931 (Fisher's exact test), Q value = 0.33

Table S23167.  Gene #2215: 'SEC14L1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
SEC14L1 MUTATED 1 2 7
SEC14L1 WILD-TYPE 88 158 131
'SEC14L1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.275 (Fisher's exact test), Q value = 0.6

Table S23168.  Gene #2215: 'SEC14L1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
SEC14L1 MUTATED 7 3 0
SEC14L1 WILD-TYPE 175 130 72
'SEC14L1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.508 (Fisher's exact test), Q value = 0.83

Table S23169.  Gene #2215: 'SEC14L1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
SEC14L1 MUTATED 1 4 2 4
SEC14L1 WILD-TYPE 111 92 90 182
'SEC14L1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00361 (Fisher's exact test), Q value = 0.055

Table S23170.  Gene #2215: 'SEC14L1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
SEC14L1 MUTATED 2 1 5 0 0 0 3
SEC14L1 WILD-TYPE 58 49 44 40 63 125 96

Figure S5527.  Get High-res Image Gene #2215: 'SEC14L1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'SEC14L1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.636 (Fisher's exact test), Q value = 0.93

Table S23171.  Gene #2215: 'SEC14L1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
SEC14L1 MUTATED 4 2 0 4
SEC14L1 WILD-TYPE 126 76 68 192
'SEC14L1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0168 (Fisher's exact test), Q value = 0.13

Table S23172.  Gene #2215: 'SEC14L1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
SEC14L1 MUTATED 1 2 0 0 6 1 0 0 0
SEC14L1 WILD-TYPE 39 60 28 80 63 47 43 28 74

Figure S5528.  Get High-res Image Gene #2215: 'SEC14L1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'ZNF142 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0126 (Fisher's exact test), Q value = 0.11

Table S23173.  Gene #2216: 'ZNF142 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ZNF142 MUTATED 0 2 0 4
ZNF142 WILD-TYPE 46 56 64 39

Figure S5529.  Get High-res Image Gene #2216: 'ZNF142 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'ZNF142 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.117 (Fisher's exact test), Q value = 0.38

Table S23174.  Gene #2216: 'ZNF142 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ZNF142 MUTATED 3 3 0
ZNF142 WILD-TYPE 48 80 77
'ZNF142 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00045 (Fisher's exact test), Q value = 0.014

Table S23175.  Gene #2216: 'ZNF142 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ZNF142 MUTATED 13 0 2 0
ZNF142 WILD-TYPE 165 183 99 20

Figure S5530.  Get High-res Image Gene #2216: 'ZNF142 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ZNF142 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00461 (Fisher's exact test), Q value = 0.062

Table S23176.  Gene #2216: 'ZNF142 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ZNF142 MUTATED 1 0 8
ZNF142 WILD-TYPE 86 80 92

Figure S5531.  Get High-res Image Gene #2216: 'ZNF142 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'ZNF142 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.454 (Fisher's exact test), Q value = 0.78

Table S23177.  Gene #2216: 'ZNF142 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ZNF142 MUTATED 4 3 5
ZNF142 WILD-TYPE 85 157 133
'ZNF142 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.802 (Fisher's exact test), Q value = 1

Table S23178.  Gene #2216: 'ZNF142 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ZNF142 MUTATED 7 3 2
ZNF142 WILD-TYPE 175 130 70
'ZNF142 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.179 (Fisher's exact test), Q value = 0.48

Table S23179.  Gene #2216: 'ZNF142 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ZNF142 MUTATED 1 6 3 5
ZNF142 WILD-TYPE 111 90 89 181
'ZNF142 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S23180.  Gene #2216: 'ZNF142 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ZNF142 MUTATED 0 0 9 0 0 2 4
ZNF142 WILD-TYPE 60 50 40 40 63 123 95

Figure S5532.  Get High-res Image Gene #2216: 'ZNF142 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ZNF142 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0499 (Fisher's exact test), Q value = 0.24

Table S23181.  Gene #2216: 'ZNF142 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ZNF142 MUTATED 8 0 1 4
ZNF142 WILD-TYPE 122 78 67 192

Figure S5533.  Get High-res Image Gene #2216: 'ZNF142 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'ZNF142 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00502 (Fisher's exact test), Q value = 0.064

Table S23182.  Gene #2216: 'ZNF142 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ZNF142 MUTATED 1 1 1 0 8 0 1 0 1
ZNF142 WILD-TYPE 39 61 27 80 61 48 42 28 73

Figure S5534.  Get High-res Image Gene #2216: 'ZNF142 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'ZNF142 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00463 (Fisher's exact test), Q value = 0.062

Table S23183.  Gene #2216: 'ZNF142 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
ZNF142 MUTATED 0 0 0 3
ZNF142 WILD-TYPE 33 31 27 16

Figure S5535.  Get High-res Image Gene #2216: 'ZNF142 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'ZNF142 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S23184.  Gene #2216: 'ZNF142 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
ZNF142 MUTATED 2 0 1 0
ZNF142 WILD-TYPE 52 10 23 22
'SLC22A4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0432 (Fisher's exact test), Q value = 0.22

Table S23185.  Gene #2217: 'SLC22A4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
SLC22A4 MUTATED 5 0 0 0
SLC22A4 WILD-TYPE 173 183 101 20

Figure S5536.  Get High-res Image Gene #2217: 'SLC22A4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'SLC22A4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.389 (Fisher's exact test), Q value = 0.72

Table S23186.  Gene #2217: 'SLC22A4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
SLC22A4 MUTATED 1 0 3
SLC22A4 WILD-TYPE 86 80 97
'SLC22A4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.374 (Fisher's exact test), Q value = 0.7

Table S23187.  Gene #2217: 'SLC22A4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
SLC22A4 MUTATED 0 2 3
SLC22A4 WILD-TYPE 89 158 135
'SLC22A4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.505 (Fisher's exact test), Q value = 0.83

Table S23188.  Gene #2217: 'SLC22A4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
SLC22A4 MUTATED 4 1 0
SLC22A4 WILD-TYPE 178 132 72
'SLC22A4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.19 (Fisher's exact test), Q value = 0.49

Table S23189.  Gene #2217: 'SLC22A4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
SLC22A4 MUTATED 0 2 2 1
SLC22A4 WILD-TYPE 112 94 90 185
'SLC22A4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00141 (Fisher's exact test), Q value = 0.031

Table S23190.  Gene #2217: 'SLC22A4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
SLC22A4 MUTATED 0 0 4 0 0 0 1
SLC22A4 WILD-TYPE 60 50 45 40 63 125 98

Figure S5537.  Get High-res Image Gene #2217: 'SLC22A4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'SLC22A4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.506 (Fisher's exact test), Q value = 0.83

Table S23191.  Gene #2217: 'SLC22A4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
SLC22A4 MUTATED 3 0 0 2
SLC22A4 WILD-TYPE 127 78 68 194
'SLC22A4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.198 (Fisher's exact test), Q value = 0.5

Table S23192.  Gene #2217: 'SLC22A4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
SLC22A4 MUTATED 0 2 0 0 2 0 0 1 0
SLC22A4 WILD-TYPE 40 60 28 80 67 48 43 27 74
'KLHDC9 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0439 (Fisher's exact test), Q value = 0.22

Table S23193.  Gene #2218: 'KLHDC9 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
KLHDC9 MUTATED 5 0 0 0
KLHDC9 WILD-TYPE 173 183 101 20

Figure S5538.  Get High-res Image Gene #2218: 'KLHDC9 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'KLHDC9 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.327 (Fisher's exact test), Q value = 0.66

Table S23194.  Gene #2218: 'KLHDC9 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
KLHDC9 MUTATED 3 0 2
KLHDC9 WILD-TYPE 84 80 98
'KLHDC9 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0621 (Fisher's exact test), Q value = 0.27

Table S23195.  Gene #2218: 'KLHDC9 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
KLHDC9 MUTATED 1 0 4
KLHDC9 WILD-TYPE 88 160 134
'KLHDC9 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.212 (Fisher's exact test), Q value = 0.52

Table S23196.  Gene #2218: 'KLHDC9 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
KLHDC9 MUTATED 4 0 1
KLHDC9 WILD-TYPE 178 133 71
'KLHDC9 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0204 (Fisher's exact test), Q value = 0.14

Table S23197.  Gene #2218: 'KLHDC9 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
KLHDC9 MUTATED 0 3 2 0
KLHDC9 WILD-TYPE 112 93 90 186

Figure S5539.  Get High-res Image Gene #2218: 'KLHDC9 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'KLHDC9 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00076 (Fisher's exact test), Q value = 0.02

Table S23198.  Gene #2218: 'KLHDC9 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
KLHDC9 MUTATED 0 0 4 0 1 0 0
KLHDC9 WILD-TYPE 60 50 45 40 62 125 99

Figure S5540.  Get High-res Image Gene #2218: 'KLHDC9 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'KLHDC9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.352 (Fisher's exact test), Q value = 0.68

Table S23199.  Gene #2218: 'KLHDC9 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
KLHDC9 MUTATED 2 2 0 1
KLHDC9 WILD-TYPE 128 76 68 195
'KLHDC9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.126 (Fisher's exact test), Q value = 0.39

Table S23200.  Gene #2218: 'KLHDC9 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
KLHDC9 MUTATED 0 3 0 0 2 0 0 0 0
KLHDC9 WILD-TYPE 40 59 28 80 67 48 43 28 74
'ANKRD12 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00202 (Fisher's exact test), Q value = 0.038

Table S23201.  Gene #2219: 'ANKRD12 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
ANKRD12 MUTATED 4 0 1 6
ANKRD12 WILD-TYPE 42 58 63 37

Figure S5541.  Get High-res Image Gene #2219: 'ANKRD12 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'ANKRD12 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.279 (Fisher's exact test), Q value = 0.61

Table S23202.  Gene #2219: 'ANKRD12 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
ANKRD12 MUTATED 5 3 3
ANKRD12 WILD-TYPE 46 80 74
'ANKRD12 MUTATION STATUS' versus 'CN_CNMF'

P value = 4e-05 (Fisher's exact test), Q value = 0.0027

Table S23203.  Gene #2219: 'ANKRD12 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
ANKRD12 MUTATED 20 1 4 0
ANKRD12 WILD-TYPE 158 182 97 20

Figure S5542.  Get High-res Image Gene #2219: 'ANKRD12 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ANKRD12 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0713 (Fisher's exact test), Q value = 0.29

Table S23204.  Gene #2219: 'ANKRD12 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
ANKRD12 MUTATED 5 1 9
ANKRD12 WILD-TYPE 82 79 91
'ANKRD12 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.668 (Fisher's exact test), Q value = 0.95

Table S23205.  Gene #2219: 'ANKRD12 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
ANKRD12 MUTATED 4 8 10
ANKRD12 WILD-TYPE 85 152 128
'ANKRD12 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.526 (Fisher's exact test), Q value = 0.85

Table S23206.  Gene #2219: 'ANKRD12 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
ANKRD12 MUTATED 11 9 2
ANKRD12 WILD-TYPE 171 124 70
'ANKRD12 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.217 (Fisher's exact test), Q value = 0.53

Table S23207.  Gene #2219: 'ANKRD12 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
ANKRD12 MUTATED 2 7 6 11
ANKRD12 WILD-TYPE 110 89 86 175
'ANKRD12 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00331 (Fisher's exact test), Q value = 0.052

Table S23208.  Gene #2219: 'ANKRD12 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
ANKRD12 MUTATED 2 3 8 1 1 2 9
ANKRD12 WILD-TYPE 58 47 41 39 62 123 90

Figure S5543.  Get High-res Image Gene #2219: 'ANKRD12 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ANKRD12 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0482 (Fisher's exact test), Q value = 0.23

Table S23209.  Gene #2219: 'ANKRD12 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
ANKRD12 MUTATED 9 2 0 14
ANKRD12 WILD-TYPE 121 76 68 182

Figure S5544.  Get High-res Image Gene #2219: 'ANKRD12 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'ANKRD12 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00349 (Fisher's exact test), Q value = 0.054

Table S23210.  Gene #2219: 'ANKRD12 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
ANKRD12 MUTATED 1 6 4 3 9 1 0 0 1
ANKRD12 WILD-TYPE 39 56 24 77 60 47 43 28 73

Figure S5545.  Get High-res Image Gene #2219: 'ANKRD12 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'ANKRD12 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.137 (Fisher's exact test), Q value = 0.41

Table S23211.  Gene #2219: 'ANKRD12 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
ANKRD12 MUTATED 1 0 0 2
ANKRD12 WILD-TYPE 32 31 27 17
'ANKRD12 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.564 (Fisher's exact test), Q value = 0.87

Table S23212.  Gene #2219: 'ANKRD12 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
ANKRD12 MUTATED 3 0 0 0
ANKRD12 WILD-TYPE 51 10 24 22
'CTNND1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0628 (Fisher's exact test), Q value = 0.27

Table S23213.  Gene #2220: 'CTNND1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
CTNND1 MUTATED 1 0 0 2
CTNND1 WILD-TYPE 45 58 64 41
'CTNND1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.791 (Fisher's exact test), Q value = 1

Table S23214.  Gene #2220: 'CTNND1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
CTNND1 MUTATED 0 2 1
CTNND1 WILD-TYPE 51 81 76
'CTNND1 MUTATION STATUS' versus 'CN_CNMF'

P value = 3e-05 (Fisher's exact test), Q value = 0.0022

Table S23215.  Gene #2220: 'CTNND1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
CTNND1 MUTATED 18 2 0 0
CTNND1 WILD-TYPE 160 181 101 20

Figure S5546.  Get High-res Image Gene #2220: 'CTNND1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'CTNND1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0539 (Fisher's exact test), Q value = 0.25

Table S23216.  Gene #2220: 'CTNND1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
CTNND1 MUTATED 8 1 8
CTNND1 WILD-TYPE 79 79 92
'CTNND1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.313 (Fisher's exact test), Q value = 0.64

Table S23217.  Gene #2220: 'CTNND1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
CTNND1 MUTATED 2 6 9
CTNND1 WILD-TYPE 87 154 129
'CTNND1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.721 (Fisher's exact test), Q value = 0.99

Table S23218.  Gene #2220: 'CTNND1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
CTNND1 MUTATED 8 7 2
CTNND1 WILD-TYPE 174 126 70
'CTNND1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00499 (Fisher's exact test), Q value = 0.064

Table S23219.  Gene #2220: 'CTNND1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
CTNND1 MUTATED 2 9 6 3
CTNND1 WILD-TYPE 110 87 86 183

Figure S5547.  Get High-res Image Gene #2220: 'CTNND1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'CTNND1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 2e-05 (Fisher's exact test), Q value = 0.0017

Table S23220.  Gene #2220: 'CTNND1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
CTNND1 MUTATED 2 3 11 1 1 1 1
CTNND1 WILD-TYPE 58 47 38 39 62 124 98

Figure S5548.  Get High-res Image Gene #2220: 'CTNND1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CTNND1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.119 (Fisher's exact test), Q value = 0.38

Table S23221.  Gene #2220: 'CTNND1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
CTNND1 MUTATED 9 5 1 5
CTNND1 WILD-TYPE 121 73 67 191
'CTNND1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0246 (Fisher's exact test), Q value = 0.16

Table S23222.  Gene #2220: 'CTNND1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
CTNND1 MUTATED 3 6 2 1 6 0 1 0 1
CTNND1 WILD-TYPE 37 56 26 79 63 48 42 28 73

Figure S5549.  Get High-res Image Gene #2220: 'CTNND1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'CTNND1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0247 (Fisher's exact test), Q value = 0.16

Table S23223.  Gene #2220: 'CTNND1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
CTNND1 MUTATED 2 0 0 3
CTNND1 WILD-TYPE 31 31 27 16

Figure S5550.  Get High-res Image Gene #2220: 'CTNND1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'CTNND1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.892 (Fisher's exact test), Q value = 1

Table S23224.  Gene #2220: 'CTNND1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
CTNND1 MUTATED 2 0 2 1
CTNND1 WILD-TYPE 52 10 22 21
'RBM16 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00558 (Fisher's exact test), Q value = 0.068

Table S23225.  Gene #2221: 'RBM16 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
RBM16 MUTATED 2 0 0 4
RBM16 WILD-TYPE 44 58 64 39

Figure S5551.  Get High-res Image Gene #2221: 'RBM16 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'RBM16 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0722 (Fisher's exact test), Q value = 0.29

Table S23226.  Gene #2221: 'RBM16 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
RBM16 MUTATED 4 1 1
RBM16 WILD-TYPE 47 82 76
'RBM16 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00374 (Fisher's exact test), Q value = 0.056

Table S23227.  Gene #2221: 'RBM16 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
RBM16 MUTATED 13 3 0 0
RBM16 WILD-TYPE 165 180 101 20

Figure S5552.  Get High-res Image Gene #2221: 'RBM16 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'RBM16 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.291 (Fisher's exact test), Q value = 0.62

Table S23228.  Gene #2221: 'RBM16 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
RBM16 MUTATED 4 1 6
RBM16 WILD-TYPE 83 79 94
'RBM16 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0856 (Fisher's exact test), Q value = 0.32

Table S23229.  Gene #2221: 'RBM16 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
RBM16 MUTATED 0 8 5
RBM16 WILD-TYPE 89 152 133
'RBM16 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.756 (Fisher's exact test), Q value = 1

Table S23230.  Gene #2221: 'RBM16 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
RBM16 MUTATED 5 6 2
RBM16 WILD-TYPE 177 127 70
'RBM16 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.615 (Fisher's exact test), Q value = 0.91

Table S23231.  Gene #2221: 'RBM16 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
RBM16 MUTATED 2 5 3 6
RBM16 WILD-TYPE 110 91 89 180
'RBM16 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00949 (Fisher's exact test), Q value = 0.092

Table S23232.  Gene #2221: 'RBM16 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
RBM16 MUTATED 3 1 5 0 2 0 5
RBM16 WILD-TYPE 57 49 44 40 61 125 94

Figure S5553.  Get High-res Image Gene #2221: 'RBM16 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'RBM16 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.253 (Fisher's exact test), Q value = 0.58

Table S23233.  Gene #2221: 'RBM16 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
RBM16 MUTATED 7 2 0 6
RBM16 WILD-TYPE 123 76 68 190
'RBM16 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0832 (Fisher's exact test), Q value = 0.31

Table S23234.  Gene #2221: 'RBM16 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
RBM16 MUTATED 0 2 1 5 6 0 0 0 1
RBM16 WILD-TYPE 40 60 27 75 63 48 43 28 73
'RBM16 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.025 (Fisher's exact test), Q value = 0.16

Table S23235.  Gene #2221: 'RBM16 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
RBM16 MUTATED 1 0 0 3
RBM16 WILD-TYPE 32 31 27 16

Figure S5554.  Get High-res Image Gene #2221: 'RBM16 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'RBM16 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.127 (Fisher's exact test), Q value = 0.4

Table S23236.  Gene #2221: 'RBM16 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
RBM16 MUTATED 1 0 3 0
RBM16 WILD-TYPE 53 10 21 22
'RASA1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0259 (Fisher's exact test), Q value = 0.16

Table S23237.  Gene #2222: 'RASA1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 64 43
RASA1 MUTATED 3 1 0 4
RASA1 WILD-TYPE 43 57 64 39

Figure S5555.  Get High-res Image Gene #2222: 'RASA1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'RASA1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.595 (Fisher's exact test), Q value = 0.9

Table S23238.  Gene #2222: 'RASA1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 51 83 77
RASA1 MUTATED 3 3 2
RASA1 WILD-TYPE 48 80 75
'RASA1 MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0011

Table S23239.  Gene #2222: 'RASA1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 178 183 101 20
RASA1 MUTATED 17 1 0 0
RASA1 WILD-TYPE 161 182 101 20

Figure S5556.  Get High-res Image Gene #2222: 'RASA1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'RASA1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00839 (Fisher's exact test), Q value = 0.085

Table S23240.  Gene #2222: 'RASA1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 87 80 100
RASA1 MUTATED 3 0 9
RASA1 WILD-TYPE 84 80 91

Figure S5557.  Get High-res Image Gene #2222: 'RASA1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'RASA1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.905 (Fisher's exact test), Q value = 1

Table S23241.  Gene #2222: 'RASA1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 160 138
RASA1 MUTATED 3 7 7
RASA1 WILD-TYPE 86 153 131
'RASA1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.76 (Fisher's exact test), Q value = 1

Table S23242.  Gene #2222: 'RASA1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 182 133 72
RASA1 MUTATED 7 6 4
RASA1 WILD-TYPE 175 127 68
'RASA1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.115 (Fisher's exact test), Q value = 0.38

Table S23243.  Gene #2222: 'RASA1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 112 96 92 186
RASA1 MUTATED 1 7 4 7
RASA1 WILD-TYPE 111 89 88 179
'RASA1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0509 (Fisher's exact test), Q value = 0.24

Table S23244.  Gene #2222: 'RASA1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 60 50 49 40 63 125 99
RASA1 MUTATED 1 2 6 1 1 2 6
RASA1 WILD-TYPE 59 48 43 39 62 123 93
'RASA1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.195 (Fisher's exact test), Q value = 0.5

Table S23245.  Gene #2222: 'RASA1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 130 78 68 196
RASA1 MUTATED 7 2 0 10
RASA1 WILD-TYPE 123 76 68 186
'RASA1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.475 (Fisher's exact test), Q value = 0.8

Table S23246.  Gene #2222: 'RASA1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 40 62 28 80 69 48 43 28 74
RASA1 MUTATED 2 2 2 3 6 1 2 0 1
RASA1 WILD-TYPE 38 60 26 77 63 47 41 28 73
'RASA1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00417 (Fisher's exact test), Q value = 0.059

Table S23247.  Gene #2222: 'RASA1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 33 31 27 19
RASA1 MUTATED 0 0 0 3
RASA1 WILD-TYPE 33 31 27 16

Figure S5558.  Get High-res Image Gene #2222: 'RASA1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'RASA1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.565 (Fisher's exact test), Q value = 0.87

Table S23248.  Gene #2222: 'RASA1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 54 10 24 22
RASA1 MUTATED 3 0 0 0
RASA1 WILD-TYPE 51 10 24 22
Methods & Data
Input

  • Mutation data file = sample_sig_gene_table.txt from Mutsig_2CV pipeline

  • Processed Mutation data file = /xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/COADREAD-TP/22592966/transformed.cor.cli.txt

  • Molecular subtypes file = /xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/COADREAD-TP/22555066/COADREAD-TP.transferedmergedcluster.txt

  • Number of patients = 489

  • Number of significantly mutated genes = 2222

  • Number of Molecular subtypes = 12

  • Exclude genes that fewer than K tumors have mutations, K = 3

Fisher's exact test

For binary or multi-class clinical features (nominal or ordinal), two-tailed Fisher's exact tests (Fisher 1922) were used to estimate the P values using the 'fisher.test' function in R

Q value calculation

For multiple hypothesis correction, Q value is the False Discovery Rate (FDR) analogue of the P value (Benjamini and Hochberg 1995), defined as the minimum FDR at which the test may be called significant. We used the 'Benjamini and Hochberg' method of 'p.adjust' function in R to convert P values into Q values.

Download Results

In addition to the links below, the full results of the analysis summarized in this report can also be downloaded programmatically using firehose_get, or interactively from either the Broad GDAC website or TCGA Data Coordination Center Portal.

References
[1] Fisher, R.A., On the interpretation of chi-square from contingency tables, and the calculation of P, Journal of the Royal Statistical Society 85(1):87-94 (1922)
[2] Benjamini and Hochberg, Controlling the false discovery rate: a practical and powerful approach to multiple testing, Journal of the Royal Statistical Society Series B 59:289-300 (1995)
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