This pipeline computes the correlation between significant arm-level copy number variations (cnvs) and selected clinical features.
Testing the association between copy number variation 82 arm-level events and 13 clinical features across 614 patients, 210 significant findings detected with Q value < 0.25.
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1q gain cnv correlated to 'PATHOLOGY_T_STAGE', 'PATHOLOGY_N_STAGE', 'PATHOLOGY_M_STAGE', and 'NUMBER_OF_LYMPH_NODES'.
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2p gain cnv correlated to 'HISTOLOGICAL_TYPE' and 'RESIDUAL_TUMOR'.
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2q gain cnv correlated to 'TUMOR_TISSUE_SITE', 'PATHOLOGY_N_STAGE', and 'HISTOLOGICAL_TYPE'.
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3p gain cnv correlated to 'TUMOR_TISSUE_SITE' and 'PATHOLOGIC_STAGE'.
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3q gain cnv correlated to 'TUMOR_TISSUE_SITE', 'PATHOLOGIC_STAGE', 'PATHOLOGY_N_STAGE', and 'PATHOLOGY_M_STAGE'.
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4q gain cnv correlated to 'PATHOLOGY_M_STAGE' and 'NUMBER_OF_LYMPH_NODES'.
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5p gain cnv correlated to 'TUMOR_TISSUE_SITE', 'PATHOLOGY_N_STAGE', 'HISTOLOGICAL_TYPE', and 'NUMBER_OF_LYMPH_NODES'.
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5q gain cnv correlated to 'TUMOR_TISSUE_SITE' and 'HISTOLOGICAL_TYPE'.
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6p gain cnv correlated to 'PATHOLOGY_N_STAGE' and 'NUMBER_OF_LYMPH_NODES'.
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6q gain cnv correlated to 'PATHOLOGIC_STAGE', 'PATHOLOGY_N_STAGE', 'PATHOLOGY_M_STAGE', and 'NUMBER_OF_LYMPH_NODES'.
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7p gain cnv correlated to 'PATHOLOGIC_STAGE', 'PATHOLOGY_N_STAGE', 'PATHOLOGY_M_STAGE', 'HISTOLOGICAL_TYPE', and 'NUMBER_OF_LYMPH_NODES'.
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7q gain cnv correlated to 'PATHOLOGIC_STAGE', 'PATHOLOGY_N_STAGE', 'PATHOLOGY_M_STAGE', 'HISTOLOGICAL_TYPE', and 'NUMBER_OF_LYMPH_NODES'.
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8q gain cnv correlated to 'PATHOLOGIC_STAGE', 'PATHOLOGY_M_STAGE', and 'HISTOLOGICAL_TYPE'.
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9p gain cnv correlated to 'Time to Death', 'TUMOR_TISSUE_SITE', and 'HISTOLOGICAL_TYPE'.
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9q gain cnv correlated to 'Time to Death' and 'HISTOLOGICAL_TYPE'.
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10p gain cnv correlated to 'Time to Death' and 'PATHOLOGY_N_STAGE'.
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10q gain cnv correlated to 'ETHNICITY'.
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11p gain cnv correlated to 'YEARS_TO_BIRTH', 'TUMOR_TISSUE_SITE', 'PATHOLOGY_M_STAGE', and 'HISTOLOGICAL_TYPE'.
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11q gain cnv correlated to 'YEARS_TO_BIRTH' and 'HISTOLOGICAL_TYPE'.
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12q gain cnv correlated to 'PATHOLOGY_N_STAGE' and 'NUMBER_OF_LYMPH_NODES'.
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13q gain cnv correlated to 'TUMOR_TISSUE_SITE', 'PATHOLOGIC_STAGE', 'PATHOLOGY_N_STAGE', 'PATHOLOGY_M_STAGE', 'HISTOLOGICAL_TYPE', and 'NUMBER_OF_LYMPH_NODES'.
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16p gain cnv correlated to 'PATHOLOGIC_STAGE', 'PATHOLOGY_N_STAGE', 'HISTOLOGICAL_TYPE', and 'NUMBER_OF_LYMPH_NODES'.
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16q gain cnv correlated to 'PATHOLOGIC_STAGE', 'PATHOLOGY_N_STAGE', 'HISTOLOGICAL_TYPE', and 'NUMBER_OF_LYMPH_NODES'.
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17p gain cnv correlated to 'Time to Death'.
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17q gain cnv correlated to 'PATHOLOGY_M_STAGE'.
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18p gain cnv correlated to 'PATHOLOGIC_STAGE', 'PATHOLOGY_N_STAGE', 'HISTOLOGICAL_TYPE', and 'NUMBER_OF_LYMPH_NODES'.
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18q gain cnv correlated to 'RADIATION_THERAPY' and 'HISTOLOGICAL_TYPE'.
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20p gain cnv correlated to 'TUMOR_TISSUE_SITE', 'PATHOLOGIC_STAGE', 'PATHOLOGY_N_STAGE', 'PATHOLOGY_M_STAGE', 'HISTOLOGICAL_TYPE', and 'NUMBER_OF_LYMPH_NODES'.
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20q gain cnv correlated to 'TUMOR_TISSUE_SITE', 'PATHOLOGIC_STAGE', 'PATHOLOGY_N_STAGE', 'PATHOLOGY_M_STAGE', 'HISTOLOGICAL_TYPE', 'RESIDUAL_TUMOR', and 'NUMBER_OF_LYMPH_NODES'.
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21q gain cnv correlated to 'YEARS_TO_BIRTH'.
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1p loss cnv correlated to 'PATHOLOGY_N_STAGE', 'PATHOLOGY_M_STAGE', 'HISTOLOGICAL_TYPE', and 'NUMBER_OF_LYMPH_NODES'.
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1q loss cnv correlated to 'PATHOLOGY_M_STAGE' and 'GENDER'.
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2p loss cnv correlated to 'TUMOR_TISSUE_SITE' and 'HISTOLOGICAL_TYPE'.
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3p loss cnv correlated to 'Time to Death', 'PATHOLOGY_T_STAGE', 'PATHOLOGY_N_STAGE', 'PATHOLOGY_M_STAGE', 'HISTOLOGICAL_TYPE', and 'NUMBER_OF_LYMPH_NODES'.
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3q loss cnv correlated to 'PATHOLOGY_M_STAGE' and 'HISTOLOGICAL_TYPE'.
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4p loss cnv correlated to 'PATHOLOGIC_STAGE', 'PATHOLOGY_N_STAGE', 'PATHOLOGY_M_STAGE', 'HISTOLOGICAL_TYPE', and 'NUMBER_OF_LYMPH_NODES'.
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4q loss cnv correlated to 'TUMOR_TISSUE_SITE', 'PATHOLOGY_N_STAGE', 'HISTOLOGICAL_TYPE', and 'NUMBER_OF_LYMPH_NODES'.
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5p loss cnv correlated to 'PATHOLOGIC_STAGE', 'PATHOLOGY_N_STAGE', 'NUMBER_OF_LYMPH_NODES', and 'ETHNICITY'.
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5q loss cnv correlated to 'Time to Death', 'PATHOLOGIC_STAGE', 'PATHOLOGY_N_STAGE', 'PATHOLOGY_M_STAGE', and 'NUMBER_OF_LYMPH_NODES'.
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6p loss cnv correlated to 'Time to Death' and 'RADIATION_THERAPY'.
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6q loss cnv correlated to 'RADIATION_THERAPY' and 'HISTOLOGICAL_TYPE'.
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7p loss cnv correlated to 'ETHNICITY'.
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7q loss cnv correlated to 'ETHNICITY'.
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8p loss cnv correlated to 'TUMOR_TISSUE_SITE', 'PATHOLOGIC_STAGE', 'PATHOLOGY_N_STAGE', 'PATHOLOGY_M_STAGE', 'HISTOLOGICAL_TYPE', and 'NUMBER_OF_LYMPH_NODES'.
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9p loss cnv correlated to 'HISTOLOGICAL_TYPE' and 'RESIDUAL_TUMOR'.
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9q loss cnv correlated to 'PATHOLOGY_M_STAGE', 'HISTOLOGICAL_TYPE', and 'ETHNICITY'.
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10p loss cnv correlated to 'YEARS_TO_BIRTH', 'RADIATION_THERAPY', 'HISTOLOGICAL_TYPE', and 'NUMBER_OF_LYMPH_NODES'.
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10q loss cnv correlated to 'YEARS_TO_BIRTH', 'RADIATION_THERAPY', and 'HISTOLOGICAL_TYPE'.
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11p loss cnv correlated to 'PATHOLOGY_N_STAGE' and 'NUMBER_OF_LYMPH_NODES'.
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11q loss cnv correlated to 'NUMBER_OF_LYMPH_NODES'.
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12p loss cnv correlated to 'HISTOLOGICAL_TYPE' and 'NUMBER_OF_LYMPH_NODES'.
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12q loss cnv correlated to 'PATHOLOGY_N_STAGE' and 'NUMBER_OF_LYMPH_NODES'.
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13q loss cnv correlated to 'HISTOLOGICAL_TYPE' and 'NUMBER_OF_LYMPH_NODES'.
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14q loss cnv correlated to 'TUMOR_TISSUE_SITE', 'PATHOLOGY_N_STAGE', 'PATHOLOGY_M_STAGE', and 'HISTOLOGICAL_TYPE'.
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15q loss cnv correlated to 'PATHOLOGY_N_STAGE', 'PATHOLOGY_M_STAGE', 'HISTOLOGICAL_TYPE', and 'NUMBER_OF_LYMPH_NODES'.
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17p loss cnv correlated to 'TUMOR_TISSUE_SITE', 'PATHOLOGIC_STAGE', 'PATHOLOGY_N_STAGE', 'PATHOLOGY_M_STAGE', 'HISTOLOGICAL_TYPE', and 'NUMBER_OF_LYMPH_NODES'.
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17q loss cnv correlated to 'PATHOLOGY_N_STAGE' and 'NUMBER_OF_LYMPH_NODES'.
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18p loss cnv correlated to 'TUMOR_TISSUE_SITE', 'PATHOLOGIC_STAGE', 'PATHOLOGY_N_STAGE', 'PATHOLOGY_M_STAGE', 'HISTOLOGICAL_TYPE', and 'NUMBER_OF_LYMPH_NODES'.
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18q loss cnv correlated to 'YEARS_TO_BIRTH', 'TUMOR_TISSUE_SITE', 'PATHOLOGIC_STAGE', 'PATHOLOGY_N_STAGE', 'PATHOLOGY_M_STAGE', 'HISTOLOGICAL_TYPE', and 'NUMBER_OF_LYMPH_NODES'.
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19p loss cnv correlated to 'PATHOLOGIC_STAGE', 'PATHOLOGY_N_STAGE', 'PATHOLOGY_M_STAGE', and 'NUMBER_OF_LYMPH_NODES'.
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19q loss cnv correlated to 'PATHOLOGIC_STAGE', 'PATHOLOGY_N_STAGE', and 'NUMBER_OF_LYMPH_NODES'.
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21q loss cnv correlated to 'TUMOR_TISSUE_SITE', 'PATHOLOGY_N_STAGE', 'HISTOLOGICAL_TYPE', 'NUMBER_OF_LYMPH_NODES', and 'ETHNICITY'.
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22q loss cnv correlated to 'PATHOLOGIC_STAGE', 'PATHOLOGY_N_STAGE', 'PATHOLOGY_M_STAGE', 'HISTOLOGICAL_TYPE', and 'NUMBER_OF_LYMPH_NODES'.
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xp loss cnv correlated to 'PATHOLOGY_N_STAGE' and 'NUMBER_OF_LYMPH_NODES'.
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xq loss cnv correlated to 'PATHOLOGY_M_STAGE'.
Clinical Features |
Time to Death |
YEARS TO BIRTH |
TUMOR TISSUE SITE |
PATHOLOGIC STAGE |
PATHOLOGY T STAGE |
PATHOLOGY N STAGE |
PATHOLOGY M STAGE |
GENDER |
RADIATION THERAPY |
HISTOLOGICAL TYPE |
RESIDUAL TUMOR |
NUMBER OF LYMPH NODES |
ETHNICITY | ||
nCNV (%) | nWild-Type | logrank test | Wilcoxon-test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Wilcoxon-test | Fisher's exact test | |
20q gain | 461 (75%) | 153 |
0.949 (1.00) |
0.4 (0.747) |
2.56e-06 (0.000888) |
0.00036 (0.0128) |
0.0961 (0.374) |
0.0006 (0.0173) |
0.00111 (0.0232) |
0.224 (0.583) |
0.505 (0.823) |
1e-05 (0.000888) |
0.0349 (0.206) |
0.00345 (0.049) |
1 (1.00) |
18q loss | 407 (66%) | 207 |
0.582 (0.862) |
0.0326 (0.197) |
4.06e-08 (4.32e-05) |
0.00011 (0.00533) |
0.367 (0.712) |
0.00023 (0.00876) |
5.81e-05 (0.00387) |
0.348 (0.692) |
1 (1.00) |
1e-05 (0.000888) |
0.0829 (0.336) |
0.000441 (0.0144) |
1 (1.00) |
13q gain | 372 (61%) | 242 |
0.61 (0.877) |
0.634 (0.889) |
0.0147 (0.128) |
0.00072 (0.0183) |
0.785 (0.966) |
0.00011 (0.00533) |
0.0121 (0.117) |
0.248 (0.608) |
0.166 (0.503) |
1e-05 (0.000888) |
0.0717 (0.306) |
0.000647 (0.0177) |
0.654 (0.898) |
20p gain | 352 (57%) | 262 |
0.531 (0.834) |
0.913 (1.00) |
0.00545 (0.0717) |
0.00096 (0.0213) |
0.447 (0.788) |
0.0222 (0.156) |
0.000901 (0.0209) |
0.121 (0.432) |
0.446 (0.787) |
2e-05 (0.00142) |
0.0658 (0.292) |
0.0199 (0.147) |
0.656 (0.898) |
3p loss | 67 (11%) | 547 |
0.031 (0.19) |
0.957 (1.00) |
0.237 (0.602) |
0.106 (0.395) |
0.0488 (0.249) |
0.0194 (0.147) |
0.00101 (0.0219) |
0.368 (0.712) |
1 (1.00) |
0.0353 (0.206) |
0.169 (0.503) |
0.0146 (0.128) |
0.45 (0.788) |
8p loss | 215 (35%) | 399 |
0.204 (0.552) |
0.718 (0.923) |
0.00204 (0.0339) |
0.00912 (0.0972) |
0.517 (0.827) |
0.00013 (0.00603) |
0.00232 (0.0364) |
0.128 (0.439) |
0.55 (0.845) |
0.00143 (0.0288) |
0.0672 (0.295) |
1.86e-05 (0.00142) |
0.0576 (0.271) |
17p loss | 338 (55%) | 276 |
0.142 (0.46) |
0.42 (0.757) |
0.027 (0.177) |
0.00208 (0.0339) |
0.343 (0.69) |
0.00109 (0.0232) |
0.00221 (0.0351) |
0.194 (0.54) |
1 (1.00) |
1e-05 (0.000888) |
0.103 (0.388) |
0.00047 (0.0147) |
1 (1.00) |
18p loss | 380 (62%) | 234 |
0.397 (0.745) |
0.0553 (0.271) |
7.77e-07 (0.000414) |
8e-05 (0.00449) |
0.867 (1.00) |
0.00317 (0.0469) |
1.11e-05 (0.000913) |
0.36 (0.705) |
0.556 (0.847) |
1e-05 (0.000888) |
0.0574 (0.271) |
0.0028 (0.042) |
0.654 (0.898) |
7p gain | 348 (57%) | 266 |
0.784 (0.966) |
0.223 (0.583) |
0.0647 (0.29) |
0.00015 (0.00666) |
0.892 (1.00) |
1e-05 (0.000888) |
0.0193 (0.147) |
0.568 (0.852) |
0.7 (0.918) |
0.00026 (0.00956) |
0.324 (0.681) |
7.06e-05 (0.00443) |
0.4 (0.747) |
7q gain | 311 (51%) | 303 |
0.975 (1.00) |
0.177 (0.514) |
0.521 (0.828) |
0.00011 (0.00533) |
0.633 (0.889) |
0.00072 (0.0183) |
0.00743 (0.0861) |
0.628 (0.889) |
0.85 (0.991) |
0.00326 (0.0471) |
0.477 (0.809) |
0.00189 (0.0336) |
0.672 (0.905) |
4p loss | 195 (32%) | 419 |
0.508 (0.823) |
0.92 (1.00) |
0.2 (0.549) |
0.00638 (0.0769) |
0.768 (0.955) |
0.00183 (0.0331) |
0.000626 (0.0176) |
0.664 (0.902) |
0.0642 (0.29) |
0.0187 (0.147) |
0.344 (0.691) |
0.000718 (0.0183) |
0.169 (0.503) |
5q loss | 120 (20%) | 494 |
0.0344 (0.205) |
0.805 (0.972) |
0.0656 (0.292) |
0.0372 (0.211) |
0.661 (0.902) |
0.0147 (0.128) |
0.0377 (0.211) |
0.541 (0.837) |
0.48 (0.812) |
0.0575 (0.271) |
0.234 (0.601) |
0.0058 (0.0744) |
0.0579 (0.271) |
21q loss | 192 (31%) | 422 |
0.844 (0.988) |
0.477 (0.809) |
0.00156 (0.0297) |
0.287 (0.648) |
0.896 (1.00) |
0.0139 (0.125) |
0.705 (0.918) |
0.664 (0.902) |
0.219 (0.576) |
0.00023 (0.00876) |
0.679 (0.906) |
0.00702 (0.0824) |
0.0376 (0.211) |
22q loss | 201 (33%) | 413 |
0.0523 (0.26) |
0.655 (0.898) |
0.696 (0.917) |
0.00209 (0.0339) |
0.374 (0.72) |
1e-05 (0.000888) |
0.00266 (0.0404) |
0.667 (0.903) |
0.841 (0.985) |
0.0202 (0.147) |
0.362 (0.707) |
0.000189 (0.00777) |
0.331 (0.685) |
1q gain | 113 (18%) | 501 |
0.393 (0.742) |
0.742 (0.939) |
0.407 (0.748) |
0.303 (0.665) |
0.0294 (0.186) |
0.0258 (0.171) |
0.0492 (0.25) |
0.532 (0.834) |
0.14 (0.46) |
0.173 (0.504) |
0.757 (0.951) |
0.00198 (0.0339) |
1 (1.00) |
3q gain | 98 (16%) | 516 |
0.169 (0.503) |
0.34 (0.69) |
0.0449 (0.235) |
0.0174 (0.142) |
0.796 (0.972) |
0.0434 (0.229) |
0.0305 (0.189) |
0.44 (0.783) |
0.801 (0.972) |
0.067 (0.295) |
0.615 (0.877) |
0.0677 (0.296) |
1 (1.00) |
5p gain | 106 (17%) | 508 |
0.615 (0.877) |
0.102 (0.387) |
0.0394 (0.216) |
0.125 (0.435) |
0.828 (0.977) |
0.0248 (0.167) |
0.212 (0.566) |
0.915 (1.00) |
0.132 (0.447) |
0.0181 (0.144) |
0.28 (0.643) |
0.0182 (0.144) |
0.591 (0.863) |
6q gain | 111 (18%) | 503 |
0.301 (0.662) |
0.613 (0.877) |
0.34 (0.69) |
0.0154 (0.131) |
0.762 (0.952) |
0.0021 (0.0339) |
0.0136 (0.124) |
0.529 (0.834) |
0.205 (0.554) |
0.145 (0.464) |
0.351 (0.694) |
0.00401 (0.0542) |
0.588 (0.862) |
11p gain | 85 (14%) | 529 |
0.634 (0.889) |
0.00354 (0.0494) |
0.0239 (0.166) |
0.243 (0.607) |
0.146 (0.465) |
0.152 (0.476) |
0.0264 (0.174) |
1 (1.00) |
1 (1.00) |
0.00155 (0.0297) |
0.608 (0.877) |
0.128 (0.439) |
0.569 (0.852) |
16p gain | 148 (24%) | 466 |
0.158 (0.49) |
0.181 (0.517) |
0.669 (0.903) |
0.0079 (0.0886) |
1 (1.00) |
0.00164 (0.0301) |
0.334 (0.687) |
1 (1.00) |
0.513 (0.825) |
0.00078 (0.0193) |
0.99 (1.00) |
0.00208 (0.0339) |
1 (1.00) |
16q gain | 145 (24%) | 469 |
0.397 (0.745) |
0.139 (0.459) |
0.59 (0.862) |
0.00363 (0.0496) |
0.978 (1.00) |
0.00052 (0.0158) |
0.265 (0.629) |
0.924 (1.00) |
1 (1.00) |
0.00091 (0.0209) |
0.98 (1.00) |
0.00237 (0.0367) |
1 (1.00) |
18p gain | 31 (5%) | 583 |
0.167 (0.503) |
0.798 (0.972) |
1 (1.00) |
0.0243 (0.166) |
0.734 (0.934) |
0.00832 (0.0914) |
1 (1.00) |
0.201 (0.549) |
0.149 (0.468) |
0.0328 (0.198) |
1 (1.00) |
0.0144 (0.128) |
1 (1.00) |
1p loss | 139 (23%) | 475 |
0.0887 (0.35) |
0.445 (0.787) |
0.0812 (0.332) |
0.122 (0.433) |
0.891 (1.00) |
0.0172 (0.142) |
0.00841 (0.0915) |
0.246 (0.607) |
0.824 (0.977) |
0.011 (0.108) |
0.589 (0.862) |
0.00357 (0.0494) |
0.324 (0.681) |
4q loss | 189 (31%) | 425 |
0.832 (0.977) |
0.688 (0.911) |
0.0126 (0.12) |
0.0762 (0.316) |
0.811 (0.974) |
0.0078 (0.0886) |
0.127 (0.439) |
0.54 (0.837) |
0.147 (0.468) |
0.00986 (0.103) |
0.902 (1.00) |
0.00608 (0.0753) |
0.173 (0.504) |
5p loss | 84 (14%) | 530 |
0.554 (0.847) |
0.747 (0.94) |
0.506 (0.823) |
0.0373 (0.211) |
0.92 (1.00) |
0.0382 (0.212) |
0.312 (0.67) |
0.638 (0.889) |
1 (1.00) |
0.438 (0.781) |
0.345 (0.692) |
0.0358 (0.206) |
0.0249 (0.167) |
10p loss | 101 (16%) | 513 |
0.127 (0.439) |
0.00327 (0.0471) |
0.137 (0.455) |
0.273 (0.638) |
0.783 (0.966) |
0.118 (0.43) |
0.21 (0.561) |
0.914 (1.00) |
0.00995 (0.103) |
0.0209 (0.15) |
0.92 (1.00) |
0.0233 (0.162) |
1 (1.00) |
14q loss | 205 (33%) | 409 |
0.8 (0.972) |
0.278 (0.643) |
0.0199 (0.147) |
0.278 (0.643) |
0.431 (0.771) |
0.0379 (0.211) |
0.0489 (0.249) |
0.493 (0.818) |
0.315 (0.673) |
1e-05 (0.000888) |
0.992 (1.00) |
0.206 (0.555) |
0.664 (0.902) |
15q loss | 229 (37%) | 385 |
0.411 (0.751) |
0.641 (0.889) |
0.0711 (0.304) |
0.0536 (0.264) |
0.35 (0.694) |
0.0192 (0.147) |
0.00819 (0.0909) |
0.277 (0.643) |
0.325 (0.681) |
0.00787 (0.0886) |
0.908 (1.00) |
0.00586 (0.0744) |
1 (1.00) |
19p loss | 62 (10%) | 552 |
0.136 (0.455) |
0.119 (0.43) |
0.284 (0.646) |
0.00091 (0.0209) |
0.722 (0.923) |
0.00016 (0.00682) |
0.0101 (0.103) |
0.688 (0.911) |
1 (1.00) |
0.311 (0.67) |
0.52 (0.828) |
6.04e-06 (0.000888) |
1 (1.00) |
2q gain | 122 (20%) | 492 |
0.495 (0.819) |
0.451 (0.788) |
0.03 (0.188) |
0.506 (0.823) |
0.443 (0.787) |
0.028 (0.18) |
0.456 (0.794) |
0.267 (0.629) |
0.158 (0.49) |
0.00642 (0.0769) |
0.266 (0.629) |
0.121 (0.432) |
0.33 (0.684) |
8q gain | 315 (51%) | 299 |
0.133 (0.447) |
0.086 (0.342) |
0.522 (0.828) |
0.0331 (0.198) |
0.202 (0.55) |
0.0685 (0.296) |
0.0199 (0.147) |
0.747 (0.94) |
0.703 (0.918) |
0.0196 (0.147) |
0.119 (0.43) |
0.172 (0.504) |
1 (1.00) |
9p gain | 124 (20%) | 490 |
0.0046 (0.0613) |
0.827 (0.977) |
0.0411 (0.221) |
0.0602 (0.28) |
0.542 (0.837) |
0.339 (0.69) |
0.558 (0.847) |
0.763 (0.952) |
0.813 (0.974) |
0.0131 (0.122) |
0.32 (0.679) |
0.366 (0.712) |
0.248 (0.608) |
9q loss | 77 (13%) | 537 |
0.502 (0.823) |
0.0525 (0.26) |
0.578 (0.861) |
0.54 (0.837) |
0.119 (0.43) |
0.486 (0.813) |
0.0355 (0.206) |
0.465 (0.798) |
0.406 (0.748) |
0.0201 (0.147) |
0.104 (0.391) |
0.236 (0.601) |
0.02 (0.147) |
10q loss | 110 (18%) | 504 |
0.109 (0.405) |
0.0085 (0.0915) |
0.0566 (0.271) |
0.495 (0.819) |
0.987 (1.00) |
0.293 (0.654) |
0.55 (0.845) |
0.916 (1.00) |
0.006 (0.0752) |
0.0152 (0.131) |
1 (1.00) |
0.123 (0.434) |
1 (1.00) |
19q loss | 56 (9%) | 558 |
0.294 (0.654) |
0.676 (0.906) |
0.199 (0.548) |
0.0109 (0.108) |
0.762 (0.952) |
0.00161 (0.0301) |
0.0646 (0.29) |
0.328 (0.681) |
0.738 (0.935) |
0.27 (0.634) |
0.877 (1.00) |
0.000446 (0.0144) |
1 (1.00) |
2p gain | 123 (20%) | 491 |
0.761 (0.952) |
0.806 (0.972) |
0.109 (0.405) |
0.564 (0.85) |
0.404 (0.748) |
0.0642 (0.29) |
0.301 (0.662) |
0.314 (0.673) |
0.345 (0.692) |
0.0179 (0.143) |
0.0416 (0.222) |
0.235 (0.601) |
0.342 (0.69) |
3p gain | 75 (12%) | 539 |
0.922 (1.00) |
0.0852 (0.342) |
0.0243 (0.166) |
0.016 (0.136) |
1 (1.00) |
0.326 (0.681) |
0.142 (0.46) |
0.389 (0.735) |
1 (1.00) |
0.0743 (0.309) |
0.794 (0.972) |
0.155 (0.484) |
1 (1.00) |
4q gain | 21 (3%) | 593 |
0.249 (0.608) |
0.797 (0.972) |
1 (1.00) |
0.379 (0.725) |
0.739 (0.936) |
0.0648 (0.29) |
0.0226 (0.159) |
0.267 (0.629) |
0.617 (0.877) |
0.416 (0.756) |
0.63 (0.889) |
0.043 (0.228) |
1 (1.00) |
5q gain | 65 (11%) | 549 |
0.871 (1.00) |
0.811 (0.974) |
0.0258 (0.171) |
0.222 (0.58) |
0.806 (0.972) |
0.298 (0.66) |
0.568 (0.852) |
0.896 (1.00) |
0.112 (0.413) |
0.0356 (0.206) |
0.386 (0.73) |
0.451 (0.788) |
1 (1.00) |
6p gain | 122 (20%) | 492 |
0.272 (0.638) |
0.434 (0.775) |
0.25 (0.608) |
0.0535 (0.264) |
0.588 (0.862) |
0.00057 (0.0169) |
0.0772 (0.319) |
0.311 (0.67) |
0.142 (0.46) |
0.31 (0.67) |
0.42 (0.757) |
0.00131 (0.0269) |
0.588 (0.862) |
9q gain | 103 (17%) | 511 |
0.0132 (0.122) |
0.797 (0.972) |
0.179 (0.515) |
0.184 (0.522) |
0.638 (0.889) |
0.534 (0.835) |
0.636 (0.889) |
0.829 (0.977) |
0.795 (0.972) |
0.0366 (0.21) |
0.698 (0.918) |
0.625 (0.887) |
1 (1.00) |
10p gain | 49 (8%) | 565 |
0.0399 (0.217) |
0.821 (0.977) |
0.613 (0.877) |
0.64 (0.889) |
0.217 (0.575) |
0.0457 (0.237) |
0.279 (0.643) |
1 (1.00) |
0.251 (0.61) |
0.821 (0.977) |
0.72 (0.923) |
0.218 (0.575) |
0.0734 (0.309) |
11q gain | 78 (13%) | 536 |
0.19 (0.534) |
7.72e-05 (0.00449) |
0.169 (0.503) |
0.288 (0.649) |
0.467 (0.801) |
0.203 (0.552) |
0.0515 (0.259) |
1 (1.00) |
1 (1.00) |
0.0118 (0.115) |
0.722 (0.923) |
0.168 (0.503) |
0.532 (0.834) |
12q gain | 114 (19%) | 500 |
0.652 (0.898) |
0.0617 (0.286) |
0.159 (0.49) |
0.116 (0.427) |
0.328 (0.681) |
0.0128 (0.121) |
0.37 (0.715) |
0.533 (0.834) |
1 (1.00) |
0.172 (0.504) |
0.565 (0.85) |
0.00558 (0.0725) |
0.592 (0.863) |
18q gain | 19 (3%) | 595 |
0.777 (0.963) |
0.326 (0.681) |
0.603 (0.876) |
0.265 (0.629) |
0.443 (0.787) |
0.144 (0.462) |
1 (1.00) |
0.243 (0.607) |
0.0472 (0.243) |
0.0409 (0.221) |
0.868 (1.00) |
0.192 (0.538) |
1 (1.00) |
1q loss | 82 (13%) | 532 |
0.188 (0.529) |
0.0951 (0.371) |
0.282 (0.645) |
0.397 (0.745) |
0.878 (1.00) |
0.409 (0.749) |
0.0164 (0.136) |
0.0438 (0.23) |
1 (1.00) |
0.195 (0.54) |
0.218 (0.575) |
0.25 (0.608) |
0.141 (0.46) |
2p loss | 17 (3%) | 597 |
0.587 (0.862) |
0.206 (0.555) |
0.00092 (0.0209) |
0.541 (0.837) |
0.883 (1.00) |
0.796 (0.972) |
0.489 (0.816) |
0.806 (0.972) |
0.207 (0.555) |
0.00978 (0.103) |
1 (1.00) |
0.7 (0.918) |
1 (1.00) |
3q loss | 44 (7%) | 570 |
0.245 (0.607) |
0.405 (0.748) |
0.475 (0.809) |
0.351 (0.694) |
0.131 (0.444) |
0.491 (0.817) |
0.0385 (0.212) |
0.16 (0.491) |
1 (1.00) |
0.00703 (0.0824) |
0.499 (0.823) |
0.513 (0.825) |
1 (1.00) |
6p loss | 46 (7%) | 568 |
0.0176 (0.142) |
0.23 (0.593) |
1 (1.00) |
0.323 (0.681) |
0.633 (0.889) |
0.459 (0.797) |
0.828 (0.977) |
0.648 (0.894) |
0.0217 (0.154) |
0.18 (0.515) |
0.0791 (0.326) |
0.502 (0.823) |
1 (1.00) |
6q loss | 68 (11%) | 546 |
0.0743 (0.309) |
0.763 (0.952) |
0.305 (0.665) |
0.638 (0.889) |
0.358 (0.704) |
0.0683 (0.296) |
0.347 (0.692) |
0.246 (0.607) |
0.0107 (0.108) |
0.0358 (0.206) |
0.174 (0.507) |
0.0501 (0.253) |
1 (1.00) |
9p loss | 75 (12%) | 539 |
0.327 (0.681) |
0.286 (0.648) |
0.574 (0.857) |
0.643 (0.891) |
0.168 (0.503) |
0.385 (0.73) |
0.0572 (0.271) |
0.139 (0.457) |
1 (1.00) |
0.0212 (0.151) |
0.0136 (0.124) |
0.0737 (0.309) |
0.126 (0.438) |
11p loss | 74 (12%) | 540 |
0.552 (0.847) |
0.501 (0.823) |
0.324 (0.681) |
0.148 (0.468) |
0.464 (0.798) |
0.0102 (0.103) |
0.363 (0.708) |
0.71 (0.918) |
0.135 (0.453) |
0.225 (0.583) |
0.897 (1.00) |
0.000373 (0.0128) |
1 (1.00) |
12p loss | 71 (12%) | 543 |
0.0564 (0.271) |
0.414 (0.753) |
0.318 (0.677) |
0.255 (0.616) |
0.367 (0.712) |
0.056 (0.271) |
0.264 (0.629) |
0.53 (0.834) |
0.766 (0.955) |
0.0115 (0.113) |
0.881 (1.00) |
0.0289 (0.183) |
1 (1.00) |
12q loss | 71 (12%) | 543 |
0.103 (0.388) |
0.901 (1.00) |
0.668 (0.903) |
0.0525 (0.26) |
0.589 (0.862) |
0.0301 (0.188) |
0.136 (0.455) |
0.9 (1.00) |
0.56 (0.847) |
0.0659 (0.292) |
1 (1.00) |
0.00642 (0.0769) |
1 (1.00) |
13q loss | 18 (3%) | 596 |
0.244 (0.607) |
0.858 (0.997) |
0.588 (0.862) |
0.71 (0.918) |
0.657 (0.898) |
0.0856 (0.342) |
0.485 (0.813) |
0.815 (0.976) |
0.165 (0.503) |
0.0459 (0.237) |
1 (1.00) |
0.0283 (0.18) |
1 (1.00) |
17q loss | 93 (15%) | 521 |
0.12 (0.43) |
0.743 (0.939) |
0.523 (0.828) |
0.1 (0.383) |
0.168 (0.503) |
0.014 (0.126) |
0.0936 (0.367) |
0.736 (0.934) |
1 (1.00) |
0.728 (0.928) |
0.463 (0.798) |
0.00155 (0.0297) |
1 (1.00) |
xp loss | 90 (15%) | 524 |
0.187 (0.526) |
0.641 (0.889) |
0.52 (0.828) |
0.485 (0.813) |
0.465 (0.798) |
0.0324 (0.197) |
0.0742 (0.309) |
0.493 (0.818) |
0.593 (0.863) |
0.262 (0.629) |
0.952 (1.00) |
0.0176 (0.142) |
1 (1.00) |
10q gain | 29 (5%) | 585 |
0.479 (0.812) |
0.12 (0.43) |
0.527 (0.832) |
0.735 (0.934) |
0.544 (0.839) |
0.137 (0.456) |
0.38 (0.725) |
1 (1.00) |
1 (1.00) |
0.86 (0.997) |
0.847 (0.989) |
0.0923 (0.363) |
0.0244 (0.166) |
17p gain | 39 (6%) | 575 |
0.0279 (0.18) |
0.589 (0.862) |
1 (1.00) |
0.572 (0.856) |
0.316 (0.673) |
0.853 (0.993) |
0.627 (0.889) |
1 (1.00) |
0.711 (0.918) |
0.831 (0.977) |
1 (1.00) |
0.902 (1.00) |
0.306 (0.667) |
17q gain | 113 (18%) | 501 |
0.085 (0.342) |
0.308 (0.67) |
0.814 (0.975) |
0.228 (0.589) |
0.694 (0.916) |
0.419 (0.757) |
0.031 (0.19) |
0.677 (0.906) |
0.808 (0.973) |
0.342 (0.69) |
0.179 (0.515) |
0.831 (0.977) |
0.0579 (0.271) |
21q gain | 34 (6%) | 580 |
0.971 (1.00) |
0.0192 (0.147) |
0.685 (0.911) |
0.634 (0.889) |
0.196 (0.54) |
0.521 (0.828) |
0.42 (0.757) |
0.486 (0.813) |
0.66 (0.901) |
0.491 (0.817) |
0.839 (0.984) |
0.221 (0.58) |
1 (1.00) |
7p loss | 3 (0%) | 611 |
0.476 (0.809) |
0.884 (1.00) |
1 (1.00) |
1 (1.00) |
0.682 (0.907) |
0.582 (0.862) |
1 (1.00) |
1 (1.00) |
1 (1.00) |
0.124 (0.434) |
1 (1.00) |
0.148 (0.468) |
0.0279 (0.18) |
7q loss | 5 (1%) | 609 |
0.33 (0.684) |
0.669 (0.903) |
0.613 (0.877) |
0.52 (0.828) |
0.417 (0.756) |
0.83 (0.977) |
1 (1.00) |
0.67 (0.903) |
0.254 (0.616) |
0.184 (0.522) |
1 (1.00) |
0.195 (0.54) |
0.0415 (0.222) |
11q loss | 91 (15%) | 523 |
0.378 (0.724) |
0.554 (0.847) |
0.298 (0.66) |
0.377 (0.724) |
0.733 (0.934) |
0.0627 (0.288) |
0.246 (0.607) |
0.65 (0.896) |
0.183 (0.52) |
0.117 (0.429) |
0.922 (1.00) |
0.0398 (0.217) |
0.54 (0.837) |
xq loss | 78 (13%) | 536 |
0.679 (0.906) |
0.981 (1.00) |
0.216 (0.574) |
0.483 (0.813) |
0.678 (0.906) |
0.235 (0.601) |
0.0164 (0.136) |
0.904 (1.00) |
0.769 (0.955) |
0.401 (0.747) |
0.4 (0.747) |
0.148 (0.468) |
1 (1.00) |
1p gain | 50 (8%) | 564 |
0.453 (0.79) |
0.913 (1.00) |
0.613 (0.877) |
0.559 (0.847) |
0.558 (0.847) |
0.314 (0.673) |
0.279 (0.643) |
0.465 (0.798) |
0.723 (0.923) |
0.0563 (0.271) |
0.3 (0.662) |
0.068 (0.296) |
0.414 (0.753) |
4p gain | 20 (3%) | 594 |
0.712 (0.918) |
0.384 (0.73) |
0.0711 (0.304) |
0.481 (0.812) |
0.338 (0.69) |
0.778 (0.963) |
0.31 (0.67) |
0.171 (0.504) |
1 (1.00) |
0.124 (0.434) |
0.688 (0.911) |
0.962 (1.00) |
1 (1.00) |
8p gain | 169 (28%) | 445 |
0.781 (0.965) |
0.548 (0.844) |
0.26 (0.627) |
0.298 (0.66) |
0.617 (0.877) |
0.165 (0.503) |
0.514 (0.825) |
1 (1.00) |
0.83 (0.977) |
0.406 (0.748) |
0.074 (0.309) |
0.212 (0.566) |
1 (1.00) |
12p gain | 128 (21%) | 486 |
0.336 (0.69) |
0.24 (0.607) |
0.91 (1.00) |
0.291 (0.654) |
0.294 (0.654) |
0.138 (0.457) |
0.665 (0.902) |
1 (1.00) |
0.144 (0.462) |
0.523 (0.828) |
0.794 (0.972) |
0.122 (0.433) |
0.588 (0.862) |
14q gain | 43 (7%) | 571 |
0.462 (0.798) |
0.851 (0.991) |
0.283 (0.645) |
0.514 (0.825) |
0.955 (1.00) |
0.614 (0.877) |
0.358 (0.704) |
1 (1.00) |
1 (1.00) |
0.128 (0.439) |
0.29 (0.652) |
0.241 (0.607) |
1 (1.00) |
15q gain | 15 (2%) | 599 |
0.76 (0.952) |
0.358 (0.704) |
1 (1.00) |
0.822 (0.977) |
0.0855 (0.342) |
0.721 (0.923) |
0.283 (0.645) |
0.0634 (0.29) |
0.508 (0.823) |
0.0829 (0.336) |
0.709 (0.918) |
0.411 (0.751) |
1 (1.00) |
19p gain | 105 (17%) | 509 |
0.237 (0.602) |
0.913 (1.00) |
0.225 (0.583) |
0.855 (0.993) |
0.827 (0.977) |
0.341 (0.69) |
0.273 (0.638) |
0.283 (0.645) |
0.304 (0.665) |
0.0974 (0.378) |
0.384 (0.73) |
0.502 (0.823) |
0.588 (0.862) |
19q gain | 113 (18%) | 501 |
0.199 (0.548) |
0.81 (0.974) |
0.638 (0.889) |
0.744 (0.939) |
0.956 (1.00) |
0.566 (0.852) |
0.285 (0.647) |
0.405 (0.748) |
1 (1.00) |
0.242 (0.607) |
0.175 (0.507) |
0.702 (0.918) |
0.277 (0.643) |
22q gain | 23 (4%) | 591 |
0.992 (1.00) |
0.32 (0.679) |
0.0884 (0.35) |
0.675 (0.906) |
0.106 (0.395) |
0.278 (0.643) |
0.38 (0.725) |
0.833 (0.977) |
0.617 (0.877) |
0.1 (0.383) |
0.348 (0.692) |
0.109 (0.405) |
1 (1.00) |
xp gain | 100 (16%) | 514 |
0.408 (0.748) |
0.778 (0.963) |
0.263 (0.629) |
0.129 (0.439) |
0.445 (0.787) |
0.124 (0.434) |
0.334 (0.687) |
0.1 (0.383) |
1 (1.00) |
0.156 (0.486) |
0.716 (0.922) |
0.682 (0.907) |
0.593 (0.863) |
xq gain | 109 (18%) | 505 |
0.703 (0.918) |
0.475 (0.809) |
0.631 (0.889) |
0.1 (0.383) |
0.407 (0.748) |
0.17 (0.503) |
0.757 (0.951) |
0.17 (0.503) |
0.802 (0.972) |
0.701 (0.918) |
0.89 (1.00) |
0.245 (0.607) |
0.589 (0.862) |
2q loss | 14 (2%) | 600 |
0.341 (0.69) |
0.503 (0.823) |
0.0624 (0.288) |
0.241 (0.607) |
1 (1.00) |
0.708 (0.918) |
0.141 (0.46) |
0.43 (0.77) |
0.508 (0.823) |
0.265 (0.629) |
0.847 (0.989) |
0.448 (0.788) |
1 (1.00) |
8q loss | 35 (6%) | 579 |
0.803 (0.972) |
0.648 (0.894) |
0.554 (0.847) |
0.484 (0.813) |
0.907 (1.00) |
0.422 (0.759) |
0.194 (0.54) |
0.0799 (0.328) |
1 (1.00) |
0.657 (0.898) |
0.31 (0.67) |
0.56 (0.847) |
1 (1.00) |
16p loss | 40 (7%) | 574 |
0.294 (0.654) |
0.36 (0.705) |
0.711 (0.918) |
0.262 (0.629) |
0.224 (0.583) |
0.535 (0.835) |
0.473 (0.809) |
0.515 (0.825) |
0.711 (0.918) |
0.503 (0.823) |
0.162 (0.497) |
0.616 (0.877) |
0.347 (0.692) |
16q loss | 43 (7%) | 571 |
0.701 (0.918) |
0.18 (0.515) |
0.372 (0.717) |
0.644 (0.892) |
0.706 (0.918) |
0.183 (0.52) |
1 (1.00) |
0.875 (1.00) |
0.457 (0.795) |
0.722 (0.923) |
0.45 (0.788) |
0.465 (0.798) |
0.337 (0.69) |
20p loss | 64 (10%) | 550 |
0.674 (0.905) |
0.609 (0.877) |
0.366 (0.712) |
0.539 (0.837) |
0.612 (0.877) |
0.556 (0.847) |
0.565 (0.85) |
0.692 (0.914) |
0.509 (0.824) |
0.511 (0.825) |
0.784 (0.966) |
0.817 (0.977) |
0.405 (0.748) |
20q loss | 8 (1%) | 606 |
0.485 (0.813) |
0.801 (0.972) |
0.688 (0.911) |
0.241 (0.607) |
0.423 (0.759) |
0.888 (1.00) |
0.605 (0.877) |
1 (1.00) |
1 (1.00) |
0.789 (0.971) |
1 (1.00) |
0.827 (0.977) |
1 (1.00) |
P value = 0.0294 (Fisher's exact test), Q value = 0.19
nPatients | T1 | T2 | T3 | T4 |
---|---|---|---|---|
ALL | 20 | 105 | 417 | 69 |
1Q GAIN MUTATED | 4 | 13 | 75 | 21 |
1Q GAIN WILD-TYPE | 16 | 92 | 342 | 48 |
P value = 0.0258 (Fisher's exact test), Q value = 0.17
nPatients | N0 | N1 | N2 |
---|---|---|---|
ALL | 346 | 150 | 115 |
1Q GAIN MUTATED | 52 | 30 | 30 |
1Q GAIN WILD-TYPE | 294 | 120 | 85 |
P value = 0.0492 (Fisher's exact test), Q value = 0.25
nPatients | 0 | 1 |
---|---|---|
ALL | 453 | 88 |
1Q GAIN MUTATED | 76 | 23 |
1Q GAIN WILD-TYPE | 377 | 65 |
P value = 0.00198 (Wilcoxon-test), Q value = 0.034
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 580 | 2.2 (4.7) |
1Q GAIN MUTATED | 108 | 3.5 (6.1) |
1Q GAIN WILD-TYPE | 472 | 1.9 (4.3) |
P value = 0.0179 (Fisher's exact test), Q value = 0.14
nPatients | COLON ADENOCARCINOMA | COLON MUCINOUS ADENOCARCINOMA | RECTAL ADENOCARCINOMA | RECTAL MUCINOUS ADENOCARCINOMA |
---|---|---|---|---|
ALL | 382 | 62 | 146 | 13 |
2P GAIN MUTATED | 75 | 8 | 40 | 0 |
2P GAIN WILD-TYPE | 307 | 54 | 106 | 13 |
P value = 0.0416 (Fisher's exact test), Q value = 0.22
nPatients | R0 | R1 | R2 | RX |
---|---|---|---|---|
ALL | 446 | 6 | 37 | 29 |
2P GAIN MUTATED | 86 | 3 | 5 | 10 |
2P GAIN WILD-TYPE | 360 | 3 | 32 | 19 |
P value = 0.03 (Fisher's exact test), Q value = 0.19
nPatients | COLON | RECTUM |
---|---|---|
ALL | 448 | 162 |
2Q GAIN MUTATED | 80 | 42 |
2Q GAIN WILD-TYPE | 368 | 120 |
P value = 0.028 (Fisher's exact test), Q value = 0.18
nPatients | N0 | N1 | N2 |
---|---|---|---|
ALL | 346 | 150 | 115 |
2Q GAIN MUTATED | 59 | 29 | 33 |
2Q GAIN WILD-TYPE | 287 | 121 | 82 |
P value = 0.00642 (Fisher's exact test), Q value = 0.077
nPatients | COLON ADENOCARCINOMA | COLON MUCINOUS ADENOCARCINOMA | RECTAL ADENOCARCINOMA | RECTAL MUCINOUS ADENOCARCINOMA |
---|---|---|---|---|
ALL | 382 | 62 | 146 | 13 |
2Q GAIN MUTATED | 72 | 8 | 42 | 0 |
2Q GAIN WILD-TYPE | 310 | 54 | 104 | 13 |
P value = 0.0243 (Fisher's exact test), Q value = 0.17
nPatients | COLON | RECTUM |
---|---|---|
ALL | 448 | 162 |
3P GAIN MUTATED | 46 | 28 |
3P GAIN WILD-TYPE | 402 | 134 |
P value = 0.016 (Fisher's exact test), Q value = 0.14
nPatients | STAGE I | STAGE IA | STAGE II | STAGE IIA | STAGE IIB | STAGE IIC | STAGE III | STAGE IIIA | STAGE IIIB | STAGE IIIC | STAGE IV | STAGE IVA | STAGE IVB |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 104 | 1 | 37 | 172 | 12 | 2 | 24 | 15 | 84 | 55 | 63 | 24 | 2 |
3P GAIN MUTATED | 9 | 1 | 2 | 21 | 1 | 0 | 5 | 4 | 6 | 7 | 9 | 4 | 2 |
3P GAIN WILD-TYPE | 95 | 0 | 35 | 151 | 11 | 2 | 19 | 11 | 78 | 48 | 54 | 20 | 0 |
P value = 0.0449 (Fisher's exact test), Q value = 0.23
nPatients | COLON | RECTUM |
---|---|---|
ALL | 448 | 162 |
3Q GAIN MUTATED | 63 | 34 |
3Q GAIN WILD-TYPE | 385 | 128 |
P value = 0.0174 (Fisher's exact test), Q value = 0.14
nPatients | STAGE I | STAGE IA | STAGE II | STAGE IIA | STAGE IIB | STAGE IIC | STAGE III | STAGE IIIA | STAGE IIIB | STAGE IIIC | STAGE IV | STAGE IVA | STAGE IVB |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 104 | 1 | 37 | 172 | 12 | 2 | 24 | 15 | 84 | 55 | 63 | 24 | 2 |
3Q GAIN MUTATED | 11 | 1 | 4 | 23 | 1 | 0 | 6 | 5 | 11 | 10 | 13 | 6 | 2 |
3Q GAIN WILD-TYPE | 93 | 0 | 33 | 149 | 11 | 2 | 18 | 10 | 73 | 45 | 50 | 18 | 0 |
P value = 0.0434 (Fisher's exact test), Q value = 0.23
nPatients | N0 | N1 | N2 |
---|---|---|---|
ALL | 346 | 150 | 115 |
3Q GAIN MUTATED | 44 | 31 | 22 |
3Q GAIN WILD-TYPE | 302 | 119 | 93 |
P value = 0.0305 (Fisher's exact test), Q value = 0.19
nPatients | 0 | 1 |
---|---|---|
ALL | 453 | 88 |
3Q GAIN MUTATED | 59 | 20 |
3Q GAIN WILD-TYPE | 394 | 68 |
P value = 0.0226 (Fisher's exact test), Q value = 0.16
nPatients | 0 | 1 |
---|---|---|
ALL | 453 | 88 |
4Q GAIN MUTATED | 12 | 7 |
4Q GAIN WILD-TYPE | 441 | 81 |
P value = 0.043 (Wilcoxon-test), Q value = 0.23
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 580 | 2.2 (4.7) |
4Q GAIN MUTATED | 21 | 2.3 (2.1) |
4Q GAIN WILD-TYPE | 559 | 2.2 (4.8) |
P value = 0.0394 (Fisher's exact test), Q value = 0.22
nPatients | COLON | RECTUM |
---|---|---|
ALL | 448 | 162 |
5P GAIN MUTATED | 69 | 37 |
5P GAIN WILD-TYPE | 379 | 125 |
P value = 0.0248 (Fisher's exact test), Q value = 0.17
nPatients | N0 | N1 | N2 |
---|---|---|---|
ALL | 346 | 150 | 115 |
5P GAIN MUTATED | 47 | 32 | 26 |
5P GAIN WILD-TYPE | 299 | 118 | 89 |
P value = 0.0181 (Fisher's exact test), Q value = 0.14
nPatients | COLON ADENOCARCINOMA | COLON MUCINOUS ADENOCARCINOMA | RECTAL ADENOCARCINOMA | RECTAL MUCINOUS ADENOCARCINOMA |
---|---|---|---|---|
ALL | 382 | 62 | 146 | 13 |
5P GAIN MUTATED | 61 | 8 | 37 | 0 |
5P GAIN WILD-TYPE | 321 | 54 | 109 | 13 |
P value = 0.0182 (Wilcoxon-test), Q value = 0.14
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 580 | 2.2 (4.7) |
5P GAIN MUTATED | 103 | 2.7 (4.3) |
5P GAIN WILD-TYPE | 477 | 2.1 (4.8) |
P value = 0.0258 (Fisher's exact test), Q value = 0.17
nPatients | COLON | RECTUM |
---|---|---|
ALL | 448 | 162 |
5Q GAIN MUTATED | 40 | 25 |
5Q GAIN WILD-TYPE | 408 | 137 |
P value = 0.0356 (Fisher's exact test), Q value = 0.21
nPatients | COLON ADENOCARCINOMA | COLON MUCINOUS ADENOCARCINOMA | RECTAL ADENOCARCINOMA | RECTAL MUCINOUS ADENOCARCINOMA |
---|---|---|---|---|
ALL | 382 | 62 | 146 | 13 |
5Q GAIN MUTATED | 36 | 4 | 25 | 0 |
5Q GAIN WILD-TYPE | 346 | 58 | 121 | 13 |
P value = 0.00057 (Fisher's exact test), Q value = 0.017
nPatients | N0 | N1 | N2 |
---|---|---|---|
ALL | 346 | 150 | 115 |
6P GAIN MUTATED | 53 | 30 | 37 |
6P GAIN WILD-TYPE | 293 | 120 | 78 |
P value = 0.00131 (Wilcoxon-test), Q value = 0.027
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 580 | 2.2 (4.7) |
6P GAIN MUTATED | 118 | 3.3 (5.2) |
6P GAIN WILD-TYPE | 462 | 2.0 (4.5) |
P value = 0.0154 (Fisher's exact test), Q value = 0.13
nPatients | STAGE I | STAGE IA | STAGE II | STAGE IIA | STAGE IIB | STAGE IIC | STAGE III | STAGE IIIA | STAGE IIIB | STAGE IIIC | STAGE IV | STAGE IVA | STAGE IVB |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 104 | 1 | 37 | 172 | 12 | 2 | 24 | 15 | 84 | 55 | 63 | 24 | 2 |
6Q GAIN MUTATED | 16 | 0 | 4 | 20 | 2 | 0 | 4 | 4 | 17 | 14 | 13 | 11 | 1 |
6Q GAIN WILD-TYPE | 88 | 1 | 33 | 152 | 10 | 2 | 20 | 11 | 67 | 41 | 50 | 13 | 1 |
P value = 0.0021 (Fisher's exact test), Q value = 0.034
nPatients | N0 | N1 | N2 |
---|---|---|---|
ALL | 346 | 150 | 115 |
6Q GAIN MUTATED | 48 | 28 | 33 |
6Q GAIN WILD-TYPE | 298 | 122 | 82 |
P value = 0.0136 (Fisher's exact test), Q value = 0.12
nPatients | 0 | 1 |
---|---|---|
ALL | 453 | 88 |
6Q GAIN MUTATED | 71 | 24 |
6Q GAIN WILD-TYPE | 382 | 64 |
P value = 0.00401 (Wilcoxon-test), Q value = 0.054
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 580 | 2.2 (4.7) |
6Q GAIN MUTATED | 107 | 3.1 (4.8) |
6Q GAIN WILD-TYPE | 473 | 2.0 (4.7) |
P value = 0.00015 (Fisher's exact test), Q value = 0.0067
nPatients | STAGE I | STAGE IA | STAGE II | STAGE IIA | STAGE IIB | STAGE IIC | STAGE III | STAGE IIIA | STAGE IIIB | STAGE IIIC | STAGE IV | STAGE IVA | STAGE IVB |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 104 | 1 | 37 | 172 | 12 | 2 | 24 | 15 | 84 | 55 | 63 | 24 | 2 |
7P GAIN MUTATED | 57 | 1 | 19 | 72 | 3 | 1 | 13 | 11 | 60 | 37 | 42 | 16 | 1 |
7P GAIN WILD-TYPE | 47 | 0 | 18 | 100 | 9 | 1 | 11 | 4 | 24 | 18 | 21 | 8 | 1 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00089
nPatients | N0 | N1 | N2 |
---|---|---|---|
ALL | 346 | 150 | 115 |
7P GAIN MUTATED | 167 | 103 | 75 |
7P GAIN WILD-TYPE | 179 | 47 | 40 |
P value = 0.0193 (Fisher's exact test), Q value = 0.15
nPatients | 0 | 1 |
---|---|---|
ALL | 453 | 88 |
7P GAIN MUTATED | 242 | 59 |
7P GAIN WILD-TYPE | 211 | 29 |
P value = 0.00026 (Fisher's exact test), Q value = 0.0096
nPatients | COLON ADENOCARCINOMA | COLON MUCINOUS ADENOCARCINOMA | RECTAL ADENOCARCINOMA | RECTAL MUCINOUS ADENOCARCINOMA |
---|---|---|---|---|
ALL | 382 | 62 | 146 | 13 |
7P GAIN MUTATED | 218 | 25 | 98 | 3 |
7P GAIN WILD-TYPE | 164 | 37 | 48 | 10 |
P value = 7.06e-05 (Wilcoxon-test), Q value = 0.0044
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 580 | 2.2 (4.7) |
7P GAIN MUTATED | 331 | 2.6 (5.2) |
7P GAIN WILD-TYPE | 249 | 1.7 (3.9) |
P value = 0.00011 (Fisher's exact test), Q value = 0.0053
nPatients | STAGE I | STAGE IA | STAGE II | STAGE IIA | STAGE IIB | STAGE IIC | STAGE III | STAGE IIIA | STAGE IIIB | STAGE IIIC | STAGE IV | STAGE IVA | STAGE IVB |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 104 | 1 | 37 | 172 | 12 | 2 | 24 | 15 | 84 | 55 | 63 | 24 | 2 |
7Q GAIN MUTATED | 54 | 1 | 17 | 61 | 3 | 1 | 12 | 7 | 56 | 32 | 38 | 16 | 1 |
7Q GAIN WILD-TYPE | 50 | 0 | 20 | 111 | 9 | 1 | 12 | 8 | 28 | 23 | 25 | 8 | 1 |
P value = 0.00072 (Fisher's exact test), Q value = 0.018
nPatients | N0 | N1 | N2 |
---|---|---|---|
ALL | 346 | 150 | 115 |
7Q GAIN MUTATED | 151 | 90 | 67 |
7Q GAIN WILD-TYPE | 195 | 60 | 48 |
P value = 0.00743 (Fisher's exact test), Q value = 0.086
nPatients | 0 | 1 |
---|---|---|
ALL | 453 | 88 |
7Q GAIN MUTATED | 212 | 55 |
7Q GAIN WILD-TYPE | 241 | 33 |
P value = 0.00326 (Fisher's exact test), Q value = 0.047
nPatients | COLON ADENOCARCINOMA | COLON MUCINOUS ADENOCARCINOMA | RECTAL ADENOCARCINOMA | RECTAL MUCINOUS ADENOCARCINOMA |
---|---|---|---|---|
ALL | 382 | 62 | 146 | 13 |
7Q GAIN MUTATED | 198 | 23 | 83 | 2 |
7Q GAIN WILD-TYPE | 184 | 39 | 63 | 11 |
P value = 0.00189 (Wilcoxon-test), Q value = 0.034
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 580 | 2.2 (4.7) |
7Q GAIN MUTATED | 298 | 2.4 (4.7) |
7Q GAIN WILD-TYPE | 282 | 2.0 (4.7) |
P value = 0.0331 (Fisher's exact test), Q value = 0.2
nPatients | STAGE I | STAGE IA | STAGE II | STAGE IIA | STAGE IIB | STAGE IIC | STAGE III | STAGE IIIA | STAGE IIIB | STAGE IIIC | STAGE IV | STAGE IVA | STAGE IVB |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 104 | 1 | 37 | 172 | 12 | 2 | 24 | 15 | 84 | 55 | 63 | 24 | 2 |
8Q GAIN MUTATED | 45 | 0 | 21 | 84 | 3 | 2 | 10 | 10 | 42 | 33 | 42 | 13 | 0 |
8Q GAIN WILD-TYPE | 59 | 1 | 16 | 88 | 9 | 0 | 14 | 5 | 42 | 22 | 21 | 11 | 2 |
P value = 0.0199 (Fisher's exact test), Q value = 0.15
nPatients | 0 | 1 |
---|---|---|
ALL | 453 | 88 |
8Q GAIN MUTATED | 221 | 55 |
8Q GAIN WILD-TYPE | 232 | 33 |
P value = 0.0196 (Fisher's exact test), Q value = 0.15
nPatients | COLON ADENOCARCINOMA | COLON MUCINOUS ADENOCARCINOMA | RECTAL ADENOCARCINOMA | RECTAL MUCINOUS ADENOCARCINOMA |
---|---|---|---|---|
ALL | 382 | 62 | 146 | 13 |
8Q GAIN MUTATED | 203 | 22 | 81 | 4 |
8Q GAIN WILD-TYPE | 179 | 40 | 65 | 9 |
P value = 0.0046 (logrank test), Q value = 0.061
nPatients | nDeath | Duration Range (Median), Month | |
---|---|---|---|
ALL | 594 | 128 | 0.0 - 148.0 (22.0) |
9P GAIN MUTATED | 120 | 36 | 0.0 - 129.3 (19.6) |
9P GAIN WILD-TYPE | 474 | 92 | 0.0 - 148.0 (23.3) |
P value = 0.0411 (Fisher's exact test), Q value = 0.22
nPatients | COLON | RECTUM |
---|---|---|
ALL | 448 | 162 |
9P GAIN MUTATED | 82 | 42 |
9P GAIN WILD-TYPE | 366 | 120 |
P value = 0.0131 (Fisher's exact test), Q value = 0.12
nPatients | COLON ADENOCARCINOMA | COLON MUCINOUS ADENOCARCINOMA | RECTAL ADENOCARCINOMA | RECTAL MUCINOUS ADENOCARCINOMA |
---|---|---|---|---|
ALL | 382 | 62 | 146 | 13 |
9P GAIN MUTATED | 64 | 18 | 36 | 5 |
9P GAIN WILD-TYPE | 318 | 44 | 110 | 8 |
P value = 0.0132 (logrank test), Q value = 0.12
nPatients | nDeath | Duration Range (Median), Month | |
---|---|---|---|
ALL | 594 | 128 | 0.0 - 148.0 (22.0) |
9Q GAIN MUTATED | 100 | 30 | 0.0 - 129.3 (17.8) |
9Q GAIN WILD-TYPE | 494 | 98 | 0.0 - 148.0 (23.3) |
P value = 0.0366 (Fisher's exact test), Q value = 0.21
nPatients | COLON ADENOCARCINOMA | COLON MUCINOUS ADENOCARCINOMA | RECTAL ADENOCARCINOMA | RECTAL MUCINOUS ADENOCARCINOMA |
---|---|---|---|---|
ALL | 382 | 62 | 146 | 13 |
9Q GAIN MUTATED | 54 | 16 | 28 | 4 |
9Q GAIN WILD-TYPE | 328 | 46 | 118 | 9 |
P value = 0.0399 (logrank test), Q value = 0.22
nPatients | nDeath | Duration Range (Median), Month | |
---|---|---|---|
ALL | 594 | 128 | 0.0 - 148.0 (22.0) |
10P GAIN MUTATED | 44 | 14 | 0.0 - 91.8 (20.8) |
10P GAIN WILD-TYPE | 550 | 114 | 0.0 - 148.0 (22.1) |
P value = 0.0457 (Fisher's exact test), Q value = 0.24
nPatients | N0 | N1 | N2 |
---|---|---|---|
ALL | 346 | 150 | 115 |
10P GAIN MUTATED | 24 | 9 | 16 |
10P GAIN WILD-TYPE | 322 | 141 | 99 |
P value = 0.0244 (Fisher's exact test), Q value = 0.17
nPatients | HISPANIC OR LATINO | NOT HISPANIC OR LATINO |
---|---|---|
ALL | 5 | 352 |
10Q GAIN MUTATED | 2 | 17 |
10Q GAIN WILD-TYPE | 3 | 335 |
P value = 0.00354 (Wilcoxon-test), Q value = 0.049
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 612 | 66.3 (12.8) |
11P GAIN MUTATED | 85 | 62.6 (12.0) |
11P GAIN WILD-TYPE | 527 | 66.8 (12.8) |
P value = 0.0239 (Fisher's exact test), Q value = 0.17
nPatients | COLON | RECTUM |
---|---|---|
ALL | 448 | 162 |
11P GAIN MUTATED | 53 | 31 |
11P GAIN WILD-TYPE | 395 | 131 |
P value = 0.0264 (Fisher's exact test), Q value = 0.17
nPatients | 0 | 1 |
---|---|---|
ALL | 453 | 88 |
11P GAIN MUTATED | 55 | 19 |
11P GAIN WILD-TYPE | 398 | 69 |
P value = 0.00155 (Fisher's exact test), Q value = 0.03
nPatients | COLON ADENOCARCINOMA | COLON MUCINOUS ADENOCARCINOMA | RECTAL ADENOCARCINOMA | RECTAL MUCINOUS ADENOCARCINOMA |
---|---|---|---|---|
ALL | 382 | 62 | 146 | 13 |
11P GAIN MUTATED | 51 | 2 | 31 | 0 |
11P GAIN WILD-TYPE | 331 | 60 | 115 | 13 |
P value = 7.72e-05 (Wilcoxon-test), Q value = 0.0045
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 612 | 66.3 (12.8) |
11Q GAIN MUTATED | 78 | 61.0 (12.2) |
11Q GAIN WILD-TYPE | 534 | 67.0 (12.7) |
P value = 0.0118 (Fisher's exact test), Q value = 0.11
nPatients | COLON ADENOCARCINOMA | COLON MUCINOUS ADENOCARCINOMA | RECTAL ADENOCARCINOMA | RECTAL MUCINOUS ADENOCARCINOMA |
---|---|---|---|---|
ALL | 382 | 62 | 146 | 13 |
11Q GAIN MUTATED | 50 | 2 | 26 | 0 |
11Q GAIN WILD-TYPE | 332 | 60 | 120 | 13 |
P value = 0.0128 (Fisher's exact test), Q value = 0.12
nPatients | N0 | N1 | N2 |
---|---|---|---|
ALL | 346 | 150 | 115 |
12Q GAIN MUTATED | 77 | 25 | 12 |
12Q GAIN WILD-TYPE | 269 | 125 | 103 |
P value = 0.00558 (Wilcoxon-test), Q value = 0.073
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 580 | 2.2 (4.7) |
12Q GAIN MUTATED | 110 | 1.1 (2.0) |
12Q GAIN WILD-TYPE | 470 | 2.5 (5.1) |
P value = 0.0147 (Fisher's exact test), Q value = 0.13
nPatients | COLON | RECTUM |
---|---|---|
ALL | 448 | 162 |
13Q GAIN MUTATED | 257 | 111 |
13Q GAIN WILD-TYPE | 191 | 51 |
P value = 0.00072 (Fisher's exact test), Q value = 0.018
nPatients | STAGE I | STAGE IA | STAGE II | STAGE IIA | STAGE IIB | STAGE IIC | STAGE III | STAGE IIIA | STAGE IIIB | STAGE IIIC | STAGE IV | STAGE IVA | STAGE IVB |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 104 | 1 | 37 | 172 | 12 | 2 | 24 | 15 | 84 | 55 | 63 | 24 | 2 |
13Q GAIN MUTATED | 62 | 0 | 19 | 85 | 5 | 2 | 14 | 13 | 55 | 38 | 48 | 17 | 0 |
13Q GAIN WILD-TYPE | 42 | 1 | 18 | 87 | 7 | 0 | 10 | 2 | 29 | 17 | 15 | 7 | 2 |
P value = 0.00011 (Fisher's exact test), Q value = 0.0053
nPatients | N0 | N1 | N2 |
---|---|---|---|
ALL | 346 | 150 | 115 |
13Q GAIN MUTATED | 184 | 104 | 81 |
13Q GAIN WILD-TYPE | 162 | 46 | 34 |
P value = 0.0121 (Fisher's exact test), Q value = 0.12
nPatients | 0 | 1 |
---|---|---|
ALL | 453 | 88 |
13Q GAIN MUTATED | 264 | 64 |
13Q GAIN WILD-TYPE | 189 | 24 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00089
nPatients | COLON ADENOCARCINOMA | COLON MUCINOUS ADENOCARCINOMA | RECTAL ADENOCARCINOMA | RECTAL MUCINOUS ADENOCARCINOMA |
---|---|---|---|---|
ALL | 382 | 62 | 146 | 13 |
13Q GAIN MUTATED | 239 | 17 | 107 | 3 |
13Q GAIN WILD-TYPE | 143 | 45 | 39 | 10 |
P value = 0.000647 (Wilcoxon-test), Q value = 0.018
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 580 | 2.2 (4.7) |
13Q GAIN MUTATED | 359 | 2.4 (4.1) |
13Q GAIN WILD-TYPE | 221 | 2.0 (5.5) |
P value = 0.0079 (Fisher's exact test), Q value = 0.089
nPatients | STAGE I | STAGE IA | STAGE II | STAGE IIA | STAGE IIB | STAGE IIC | STAGE III | STAGE IIIA | STAGE IIIB | STAGE IIIC | STAGE IV | STAGE IVA | STAGE IVB |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 104 | 1 | 37 | 172 | 12 | 2 | 24 | 15 | 84 | 55 | 63 | 24 | 2 |
16P GAIN MUTATED | 18 | 1 | 4 | 31 | 3 | 0 | 8 | 7 | 24 | 20 | 17 | 6 | 1 |
16P GAIN WILD-TYPE | 86 | 0 | 33 | 141 | 9 | 2 | 16 | 8 | 60 | 35 | 46 | 18 | 1 |
P value = 0.00164 (Fisher's exact test), Q value = 0.03
nPatients | N0 | N1 | N2 |
---|---|---|---|
ALL | 346 | 150 | 115 |
16P GAIN MUTATED | 64 | 46 | 36 |
16P GAIN WILD-TYPE | 282 | 104 | 79 |
P value = 0.00078 (Fisher's exact test), Q value = 0.019
nPatients | COLON ADENOCARCINOMA | COLON MUCINOUS ADENOCARCINOMA | RECTAL ADENOCARCINOMA | RECTAL MUCINOUS ADENOCARCINOMA |
---|---|---|---|---|
ALL | 382 | 62 | 146 | 13 |
16P GAIN MUTATED | 100 | 5 | 41 | 0 |
16P GAIN WILD-TYPE | 282 | 57 | 105 | 13 |
P value = 0.00208 (Wilcoxon-test), Q value = 0.034
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 580 | 2.2 (4.7) |
16P GAIN MUTATED | 140 | 2.7 (4.4) |
16P GAIN WILD-TYPE | 440 | 2.1 (4.8) |
P value = 0.00363 (Fisher's exact test), Q value = 0.05
nPatients | STAGE I | STAGE IA | STAGE II | STAGE IIA | STAGE IIB | STAGE IIC | STAGE III | STAGE IIIA | STAGE IIIB | STAGE IIIC | STAGE IV | STAGE IVA | STAGE IVB |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 104 | 1 | 37 | 172 | 12 | 2 | 24 | 15 | 84 | 55 | 63 | 24 | 2 |
16Q GAIN MUTATED | 17 | 1 | 4 | 30 | 2 | 0 | 8 | 8 | 26 | 17 | 16 | 7 | 1 |
16Q GAIN WILD-TYPE | 87 | 0 | 33 | 142 | 10 | 2 | 16 | 7 | 58 | 38 | 47 | 17 | 1 |
P value = 0.00052 (Fisher's exact test), Q value = 0.016
nPatients | N0 | N1 | N2 |
---|---|---|---|
ALL | 346 | 150 | 115 |
16Q GAIN MUTATED | 61 | 48 | 34 |
16Q GAIN WILD-TYPE | 285 | 102 | 81 |
P value = 0.00091 (Fisher's exact test), Q value = 0.021
nPatients | COLON ADENOCARCINOMA | COLON MUCINOUS ADENOCARCINOMA | RECTAL ADENOCARCINOMA | RECTAL MUCINOUS ADENOCARCINOMA |
---|---|---|---|---|
ALL | 382 | 62 | 146 | 13 |
16Q GAIN MUTATED | 97 | 5 | 41 | 0 |
16Q GAIN WILD-TYPE | 285 | 57 | 105 | 13 |
P value = 0.00237 (Wilcoxon-test), Q value = 0.037
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 580 | 2.2 (4.7) |
16Q GAIN MUTATED | 138 | 2.5 (3.8) |
16Q GAIN WILD-TYPE | 442 | 2.1 (5.0) |
P value = 0.0279 (logrank test), Q value = 0.18
nPatients | nDeath | Duration Range (Median), Month | |
---|---|---|---|
ALL | 594 | 128 | 0.0 - 148.0 (22.0) |
17P GAIN MUTATED | 39 | 2 | 1.0 - 148.0 (20.0) |
17P GAIN WILD-TYPE | 555 | 126 | 0.0 - 140.4 (22.0) |
P value = 0.031 (Fisher's exact test), Q value = 0.19
nPatients | 0 | 1 |
---|---|---|
ALL | 453 | 88 |
17Q GAIN MUTATED | 72 | 23 |
17Q GAIN WILD-TYPE | 381 | 65 |
P value = 0.0243 (Fisher's exact test), Q value = 0.17
nPatients | STAGE I | STAGE IA | STAGE II | STAGE IIA | STAGE IIB | STAGE IIC | STAGE III | STAGE IIIA | STAGE IIIB | STAGE IIIC | STAGE IV | STAGE IVA | STAGE IVB |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 104 | 1 | 37 | 172 | 12 | 2 | 24 | 15 | 84 | 55 | 63 | 24 | 2 |
18P GAIN MUTATED | 4 | 0 | 5 | 4 | 0 | 0 | 2 | 0 | 4 | 7 | 4 | 0 | 1 |
18P GAIN WILD-TYPE | 100 | 1 | 32 | 168 | 12 | 2 | 22 | 15 | 80 | 48 | 59 | 24 | 1 |
P value = 0.00832 (Fisher's exact test), Q value = 0.091
nPatients | N0 | N1 | N2 |
---|---|---|---|
ALL | 346 | 150 | 115 |
18P GAIN MUTATED | 13 | 5 | 13 |
18P GAIN WILD-TYPE | 333 | 145 | 102 |
P value = 0.0328 (Fisher's exact test), Q value = 0.2
nPatients | COLON ADENOCARCINOMA | COLON MUCINOUS ADENOCARCINOMA | RECTAL ADENOCARCINOMA | RECTAL MUCINOUS ADENOCARCINOMA |
---|---|---|---|---|
ALL | 382 | 62 | 146 | 13 |
18P GAIN MUTATED | 16 | 7 | 6 | 2 |
18P GAIN WILD-TYPE | 366 | 55 | 140 | 11 |
P value = 0.0144 (Wilcoxon-test), Q value = 0.13
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 580 | 2.2 (4.7) |
18P GAIN MUTATED | 30 | 4.7 (6.9) |
18P GAIN WILD-TYPE | 550 | 2.1 (4.5) |
P value = 0.0472 (Fisher's exact test), Q value = 0.24
nPatients | NO | YES |
---|---|---|
ALL | 482 | 29 |
18Q GAIN MUTATED | 12 | 3 |
18Q GAIN WILD-TYPE | 470 | 26 |
P value = 0.0409 (Fisher's exact test), Q value = 0.22
nPatients | COLON ADENOCARCINOMA | COLON MUCINOUS ADENOCARCINOMA | RECTAL ADENOCARCINOMA | RECTAL MUCINOUS ADENOCARCINOMA |
---|---|---|---|---|
ALL | 382 | 62 | 146 | 13 |
18Q GAIN MUTATED | 8 | 5 | 5 | 1 |
18Q GAIN WILD-TYPE | 374 | 57 | 141 | 12 |
P value = 0.00545 (Fisher's exact test), Q value = 0.072
nPatients | COLON | RECTUM |
---|---|---|
ALL | 448 | 162 |
20P GAIN MUTATED | 242 | 108 |
20P GAIN WILD-TYPE | 206 | 54 |
P value = 0.00096 (Fisher's exact test), Q value = 0.021
nPatients | STAGE I | STAGE IA | STAGE II | STAGE IIA | STAGE IIB | STAGE IIC | STAGE III | STAGE IIIA | STAGE IIIB | STAGE IIIC | STAGE IV | STAGE IVA | STAGE IVB |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 104 | 1 | 37 | 172 | 12 | 2 | 24 | 15 | 84 | 55 | 63 | 24 | 2 |
20P GAIN MUTATED | 63 | 1 | 14 | 86 | 4 | 1 | 12 | 13 | 46 | 32 | 48 | 16 | 1 |
20P GAIN WILD-TYPE | 41 | 0 | 23 | 86 | 8 | 1 | 12 | 2 | 38 | 23 | 15 | 8 | 1 |
P value = 0.0222 (Fisher's exact test), Q value = 0.16
nPatients | N0 | N1 | N2 |
---|---|---|---|
ALL | 346 | 150 | 115 |
20P GAIN MUTATED | 181 | 94 | 74 |
20P GAIN WILD-TYPE | 165 | 56 | 41 |
P value = 0.000901 (Fisher's exact test), Q value = 0.021
nPatients | 0 | 1 |
---|---|---|
ALL | 453 | 88 |
20P GAIN MUTATED | 248 | 65 |
20P GAIN WILD-TYPE | 205 | 23 |
P value = 2e-05 (Fisher's exact test), Q value = 0.0014
nPatients | COLON ADENOCARCINOMA | COLON MUCINOUS ADENOCARCINOMA | RECTAL ADENOCARCINOMA | RECTAL MUCINOUS ADENOCARCINOMA |
---|---|---|---|---|
ALL | 382 | 62 | 146 | 13 |
20P GAIN MUTATED | 219 | 20 | 101 | 5 |
20P GAIN WILD-TYPE | 163 | 42 | 45 | 8 |
P value = 0.0199 (Wilcoxon-test), Q value = 0.15
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 580 | 2.2 (4.7) |
20P GAIN MUTATED | 338 | 2.4 (4.7) |
20P GAIN WILD-TYPE | 242 | 2.0 (4.6) |
P value = 2.56e-06 (Fisher's exact test), Q value = 0.00089
nPatients | COLON | RECTUM |
---|---|---|
ALL | 448 | 162 |
20Q GAIN MUTATED | 315 | 143 |
20Q GAIN WILD-TYPE | 133 | 19 |
P value = 0.00036 (Fisher's exact test), Q value = 0.013
nPatients | STAGE I | STAGE IA | STAGE II | STAGE IIA | STAGE IIB | STAGE IIC | STAGE III | STAGE IIIA | STAGE IIIB | STAGE IIIC | STAGE IV | STAGE IVA | STAGE IVB |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 104 | 1 | 37 | 172 | 12 | 2 | 24 | 15 | 84 | 55 | 63 | 24 | 2 |
20Q GAIN MUTATED | 79 | 1 | 21 | 117 | 5 | 2 | 17 | 14 | 66 | 44 | 56 | 22 | 1 |
20Q GAIN WILD-TYPE | 25 | 0 | 16 | 55 | 7 | 0 | 7 | 1 | 18 | 11 | 7 | 2 | 1 |
P value = 6e-04 (Fisher's exact test), Q value = 0.017
nPatients | N0 | N1 | N2 |
---|---|---|---|
ALL | 346 | 150 | 115 |
20Q GAIN MUTATED | 240 | 127 | 91 |
20Q GAIN WILD-TYPE | 106 | 23 | 24 |
P value = 0.00111 (Fisher's exact test), Q value = 0.023
nPatients | 0 | 1 |
---|---|---|
ALL | 453 | 88 |
20Q GAIN MUTATED | 330 | 78 |
20Q GAIN WILD-TYPE | 123 | 10 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00089
nPatients | COLON ADENOCARCINOMA | COLON MUCINOUS ADENOCARCINOMA | RECTAL ADENOCARCINOMA | RECTAL MUCINOUS ADENOCARCINOMA |
---|---|---|---|---|
ALL | 382 | 62 | 146 | 13 |
20Q GAIN MUTATED | 287 | 25 | 134 | 7 |
20Q GAIN WILD-TYPE | 95 | 37 | 12 | 6 |
P value = 0.0349 (Fisher's exact test), Q value = 0.21
nPatients | R0 | R1 | R2 | RX |
---|---|---|---|---|
ALL | 446 | 6 | 37 | 29 |
20Q GAIN MUTATED | 333 | 5 | 32 | 16 |
20Q GAIN WILD-TYPE | 113 | 1 | 5 | 13 |
P value = 0.00345 (Wilcoxon-test), Q value = 0.049
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 580 | 2.2 (4.7) |
20Q GAIN MUTATED | 439 | 2.3 (4.7) |
20Q GAIN WILD-TYPE | 141 | 1.8 (4.7) |
P value = 0.0192 (Wilcoxon-test), Q value = 0.15
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 612 | 66.3 (12.8) |
21Q GAIN MUTATED | 34 | 61.9 (11.3) |
21Q GAIN WILD-TYPE | 578 | 66.5 (12.8) |
P value = 0.0172 (Fisher's exact test), Q value = 0.14
nPatients | N0 | N1 | N2 |
---|---|---|---|
ALL | 346 | 150 | 115 |
1P LOSS MUTATED | 65 | 37 | 36 |
1P LOSS WILD-TYPE | 281 | 113 | 79 |
P value = 0.00841 (Fisher's exact test), Q value = 0.091
nPatients | 0 | 1 |
---|---|---|
ALL | 453 | 88 |
1P LOSS MUTATED | 94 | 30 |
1P LOSS WILD-TYPE | 359 | 58 |
P value = 0.011 (Fisher's exact test), Q value = 0.11
nPatients | COLON ADENOCARCINOMA | COLON MUCINOUS ADENOCARCINOMA | RECTAL ADENOCARCINOMA | RECTAL MUCINOUS ADENOCARCINOMA |
---|---|---|---|---|
ALL | 382 | 62 | 146 | 13 |
1P LOSS MUTATED | 85 | 9 | 44 | 0 |
1P LOSS WILD-TYPE | 297 | 53 | 102 | 13 |
P value = 0.00357 (Wilcoxon-test), Q value = 0.049
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 580 | 2.2 (4.7) |
1P LOSS MUTATED | 130 | 3.4 (6.3) |
1P LOSS WILD-TYPE | 450 | 1.9 (4.1) |
P value = 0.0164 (Fisher's exact test), Q value = 0.14
nPatients | 0 | 1 |
---|---|---|
ALL | 453 | 88 |
1Q LOSS MUTATED | 53 | 19 |
1Q LOSS WILD-TYPE | 400 | 69 |
P value = 0.0438 (Fisher's exact test), Q value = 0.23
nPatients | FEMALE | MALE |
---|---|---|
ALL | 289 | 325 |
1Q LOSS MUTATED | 30 | 52 |
1Q LOSS WILD-TYPE | 259 | 273 |
P value = 0.00092 (Fisher's exact test), Q value = 0.021
nPatients | COLON | RECTUM |
---|---|---|
ALL | 448 | 162 |
2P LOSS MUTATED | 6 | 11 |
2P LOSS WILD-TYPE | 442 | 151 |
P value = 0.00978 (Fisher's exact test), Q value = 0.1
nPatients | COLON ADENOCARCINOMA | COLON MUCINOUS ADENOCARCINOMA | RECTAL ADENOCARCINOMA | RECTAL MUCINOUS ADENOCARCINOMA |
---|---|---|---|---|
ALL | 382 | 62 | 146 | 13 |
2P LOSS MUTATED | 6 | 0 | 9 | 1 |
2P LOSS WILD-TYPE | 376 | 62 | 137 | 12 |
P value = 0.031 (logrank test), Q value = 0.19
nPatients | nDeath | Duration Range (Median), Month | |
---|---|---|---|
ALL | 594 | 128 | 0.0 - 148.0 (22.0) |
3P LOSS MUTATED | 66 | 16 | 0.2 - 85.0 (15.5) |
3P LOSS WILD-TYPE | 528 | 112 | 0.0 - 148.0 (23.3) |
P value = 0.0488 (Fisher's exact test), Q value = 0.25
nPatients | T1 | T2 | T3 | T4 |
---|---|---|---|---|
ALL | 20 | 105 | 417 | 69 |
3P LOSS MUTATED | 2 | 4 | 51 | 9 |
3P LOSS WILD-TYPE | 18 | 101 | 366 | 60 |
P value = 0.0194 (Fisher's exact test), Q value = 0.15
nPatients | N0 | N1 | N2 |
---|---|---|---|
ALL | 346 | 150 | 115 |
3P LOSS MUTATED | 27 | 21 | 18 |
3P LOSS WILD-TYPE | 319 | 129 | 97 |
P value = 0.00101 (Fisher's exact test), Q value = 0.022
nPatients | 0 | 1 |
---|---|---|
ALL | 453 | 88 |
3P LOSS MUTATED | 39 | 19 |
3P LOSS WILD-TYPE | 414 | 69 |
P value = 0.0353 (Fisher's exact test), Q value = 0.21
nPatients | COLON ADENOCARCINOMA | COLON MUCINOUS ADENOCARCINOMA | RECTAL ADENOCARCINOMA | RECTAL MUCINOUS ADENOCARCINOMA |
---|---|---|---|---|
ALL | 382 | 62 | 146 | 13 |
3P LOSS MUTATED | 49 | 4 | 9 | 3 |
3P LOSS WILD-TYPE | 333 | 58 | 137 | 10 |
P value = 0.0146 (Wilcoxon-test), Q value = 0.13
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 580 | 2.2 (4.7) |
3P LOSS MUTATED | 61 | 3.4 (5.6) |
3P LOSS WILD-TYPE | 519 | 2.1 (4.6) |
P value = 0.0385 (Fisher's exact test), Q value = 0.21
nPatients | 0 | 1 |
---|---|---|
ALL | 453 | 88 |
3Q LOSS MUTATED | 27 | 11 |
3Q LOSS WILD-TYPE | 426 | 77 |
P value = 0.00703 (Fisher's exact test), Q value = 0.082
nPatients | COLON ADENOCARCINOMA | COLON MUCINOUS ADENOCARCINOMA | RECTAL ADENOCARCINOMA | RECTAL MUCINOUS ADENOCARCINOMA |
---|---|---|---|---|
ALL | 382 | 62 | 146 | 13 |
3Q LOSS MUTATED | 31 | 3 | 5 | 4 |
3Q LOSS WILD-TYPE | 351 | 59 | 141 | 9 |
P value = 0.00638 (Fisher's exact test), Q value = 0.077
nPatients | STAGE I | STAGE IA | STAGE II | STAGE IIA | STAGE IIB | STAGE IIC | STAGE III | STAGE IIIA | STAGE IIIB | STAGE IIIC | STAGE IV | STAGE IVA | STAGE IVB |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 104 | 1 | 37 | 172 | 12 | 2 | 24 | 15 | 84 | 55 | 63 | 24 | 2 |
4P LOSS MUTATED | 26 | 0 | 6 | 50 | 3 | 0 | 6 | 8 | 25 | 23 | 31 | 11 | 1 |
4P LOSS WILD-TYPE | 78 | 1 | 31 | 122 | 9 | 2 | 18 | 7 | 59 | 32 | 32 | 13 | 1 |
P value = 0.00183 (Fisher's exact test), Q value = 0.033
nPatients | N0 | N1 | N2 |
---|---|---|---|
ALL | 346 | 150 | 115 |
4P LOSS MUTATED | 90 | 56 | 48 |
4P LOSS WILD-TYPE | 256 | 94 | 67 |
P value = 0.000626 (Fisher's exact test), Q value = 0.018
nPatients | 0 | 1 |
---|---|---|
ALL | 453 | 88 |
4P LOSS MUTATED | 128 | 42 |
4P LOSS WILD-TYPE | 325 | 46 |
P value = 0.0187 (Fisher's exact test), Q value = 0.15
nPatients | COLON ADENOCARCINOMA | COLON MUCINOUS ADENOCARCINOMA | RECTAL ADENOCARCINOMA | RECTAL MUCINOUS ADENOCARCINOMA |
---|---|---|---|---|
ALL | 382 | 62 | 146 | 13 |
4P LOSS MUTATED | 125 | 10 | 54 | 3 |
4P LOSS WILD-TYPE | 257 | 52 | 92 | 10 |
P value = 0.000718 (Wilcoxon-test), Q value = 0.018
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 580 | 2.2 (4.7) |
4P LOSS MUTATED | 185 | 3.0 (5.1) |
4P LOSS WILD-TYPE | 395 | 1.8 (4.5) |
P value = 0.0126 (Fisher's exact test), Q value = 0.12
nPatients | COLON | RECTUM |
---|---|---|
ALL | 448 | 162 |
4Q LOSS MUTATED | 123 | 62 |
4Q LOSS WILD-TYPE | 325 | 100 |
P value = 0.0078 (Fisher's exact test), Q value = 0.089
nPatients | N0 | N1 | N2 |
---|---|---|---|
ALL | 346 | 150 | 115 |
4Q LOSS MUTATED | 89 | 55 | 44 |
4Q LOSS WILD-TYPE | 257 | 95 | 71 |
P value = 0.00986 (Fisher's exact test), Q value = 0.1
nPatients | COLON ADENOCARCINOMA | COLON MUCINOUS ADENOCARCINOMA | RECTAL ADENOCARCINOMA | RECTAL MUCINOUS ADENOCARCINOMA |
---|---|---|---|---|
ALL | 382 | 62 | 146 | 13 |
4Q LOSS MUTATED | 112 | 11 | 58 | 3 |
4Q LOSS WILD-TYPE | 270 | 51 | 88 | 10 |
P value = 0.00608 (Wilcoxon-test), Q value = 0.075
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 580 | 2.2 (4.7) |
4Q LOSS MUTATED | 179 | 2.9 (5.1) |
4Q LOSS WILD-TYPE | 401 | 1.9 (4.5) |
P value = 0.0373 (Fisher's exact test), Q value = 0.21
nPatients | STAGE I | STAGE IA | STAGE II | STAGE IIA | STAGE IIB | STAGE IIC | STAGE III | STAGE IIIA | STAGE IIIB | STAGE IIIC | STAGE IV | STAGE IVA | STAGE IVB |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 104 | 1 | 37 | 172 | 12 | 2 | 24 | 15 | 84 | 55 | 63 | 24 | 2 |
5P LOSS MUTATED | 13 | 0 | 4 | 15 | 0 | 1 | 3 | 5 | 13 | 12 | 8 | 7 | 0 |
5P LOSS WILD-TYPE | 91 | 1 | 33 | 157 | 12 | 1 | 21 | 10 | 71 | 43 | 55 | 17 | 2 |
P value = 0.0382 (Fisher's exact test), Q value = 0.21
nPatients | N0 | N1 | N2 |
---|---|---|---|
ALL | 346 | 150 | 115 |
5P LOSS MUTATED | 37 | 27 | 20 |
5P LOSS WILD-TYPE | 309 | 123 | 95 |
P value = 0.0358 (Wilcoxon-test), Q value = 0.21
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 580 | 2.2 (4.7) |
5P LOSS MUTATED | 81 | 3.6 (7.1) |
5P LOSS WILD-TYPE | 499 | 2.0 (4.1) |
P value = 0.0249 (Fisher's exact test), Q value = 0.17
nPatients | HISPANIC OR LATINO | NOT HISPANIC OR LATINO |
---|---|---|
ALL | 5 | 352 |
5P LOSS MUTATED | 3 | 50 |
5P LOSS WILD-TYPE | 2 | 302 |
P value = 0.0344 (logrank test), Q value = 0.2
nPatients | nDeath | Duration Range (Median), Month | |
---|---|---|---|
ALL | 594 | 128 | 0.0 - 148.0 (22.0) |
5Q LOSS MUTATED | 115 | 33 | 0.2 - 126.4 (23.0) |
5Q LOSS WILD-TYPE | 479 | 95 | 0.0 - 148.0 (22.0) |
P value = 0.0372 (Fisher's exact test), Q value = 0.21
nPatients | STAGE I | STAGE IA | STAGE II | STAGE IIA | STAGE IIB | STAGE IIC | STAGE III | STAGE IIIA | STAGE IIIB | STAGE IIIC | STAGE IV | STAGE IVA | STAGE IVB |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 104 | 1 | 37 | 172 | 12 | 2 | 24 | 15 | 84 | 55 | 63 | 24 | 2 |
5Q LOSS MUTATED | 17 | 0 | 7 | 27 | 0 | 0 | 3 | 5 | 16 | 18 | 14 | 10 | 0 |
5Q LOSS WILD-TYPE | 87 | 1 | 30 | 145 | 12 | 2 | 21 | 10 | 68 | 37 | 49 | 14 | 2 |
P value = 0.0147 (Fisher's exact test), Q value = 0.13
nPatients | N0 | N1 | N2 |
---|---|---|---|
ALL | 346 | 150 | 115 |
5Q LOSS MUTATED | 56 | 31 | 33 |
5Q LOSS WILD-TYPE | 290 | 119 | 82 |
P value = 0.0377 (Fisher's exact test), Q value = 0.21
nPatients | 0 | 1 |
---|---|---|
ALL | 453 | 88 |
5Q LOSS MUTATED | 79 | 24 |
5Q LOSS WILD-TYPE | 374 | 64 |
P value = 0.0058 (Wilcoxon-test), Q value = 0.074
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 580 | 2.2 (4.7) |
5Q LOSS MUTATED | 115 | 3.2 (5.6) |
5Q LOSS WILD-TYPE | 465 | 2.0 (4.4) |
P value = 0.0176 (logrank test), Q value = 0.14
nPatients | nDeath | Duration Range (Median), Month | |
---|---|---|---|
ALL | 594 | 128 | 0.0 - 148.0 (22.0) |
6P LOSS MUTATED | 45 | 13 | 2.0 - 45.4 (17.8) |
6P LOSS WILD-TYPE | 549 | 115 | 0.0 - 148.0 (22.4) |
P value = 0.0217 (Fisher's exact test), Q value = 0.15
nPatients | NO | YES |
---|---|---|
ALL | 482 | 29 |
6P LOSS MUTATED | 35 | 6 |
6P LOSS WILD-TYPE | 447 | 23 |
P value = 0.0107 (Fisher's exact test), Q value = 0.11
nPatients | NO | YES |
---|---|---|
ALL | 482 | 29 |
6Q LOSS MUTATED | 50 | 8 |
6Q LOSS WILD-TYPE | 432 | 21 |
P value = 0.0358 (Fisher's exact test), Q value = 0.21
nPatients | COLON ADENOCARCINOMA | COLON MUCINOUS ADENOCARCINOMA | RECTAL ADENOCARCINOMA | RECTAL MUCINOUS ADENOCARCINOMA |
---|---|---|---|---|
ALL | 382 | 62 | 146 | 13 |
6Q LOSS MUTATED | 37 | 7 | 16 | 5 |
6Q LOSS WILD-TYPE | 345 | 55 | 130 | 8 |
P value = 0.0279 (Fisher's exact test), Q value = 0.18
nPatients | HISPANIC OR LATINO | NOT HISPANIC OR LATINO |
---|---|---|
ALL | 5 | 352 |
7P LOSS MUTATED | 1 | 1 |
7P LOSS WILD-TYPE | 4 | 351 |
P value = 0.0415 (Fisher's exact test), Q value = 0.22
nPatients | HISPANIC OR LATINO | NOT HISPANIC OR LATINO |
---|---|---|
ALL | 5 | 352 |
7Q LOSS MUTATED | 1 | 2 |
7Q LOSS WILD-TYPE | 4 | 350 |
P value = 0.00204 (Fisher's exact test), Q value = 0.034
nPatients | COLON | RECTUM |
---|---|---|
ALL | 448 | 162 |
8P LOSS MUTATED | 140 | 73 |
8P LOSS WILD-TYPE | 308 | 89 |
P value = 0.00912 (Fisher's exact test), Q value = 0.097
nPatients | STAGE I | STAGE IA | STAGE II | STAGE IIA | STAGE IIB | STAGE IIC | STAGE III | STAGE IIIA | STAGE IIIB | STAGE IIIC | STAGE IV | STAGE IVA | STAGE IVB |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 104 | 1 | 37 | 172 | 12 | 2 | 24 | 15 | 84 | 55 | 63 | 24 | 2 |
8P LOSS MUTATED | 30 | 0 | 9 | 49 | 2 | 0 | 10 | 8 | 30 | 25 | 33 | 11 | 1 |
8P LOSS WILD-TYPE | 74 | 1 | 28 | 123 | 10 | 2 | 14 | 7 | 54 | 30 | 30 | 13 | 1 |
P value = 0.00013 (Fisher's exact test), Q value = 0.006
nPatients | N0 | N1 | N2 |
---|---|---|---|
ALL | 346 | 150 | 115 |
8P LOSS MUTATED | 98 | 62 | 55 |
8P LOSS WILD-TYPE | 248 | 88 | 60 |
P value = 0.00232 (Fisher's exact test), Q value = 0.036
nPatients | 0 | 1 |
---|---|---|
ALL | 453 | 88 |
8P LOSS MUTATED | 148 | 44 |
8P LOSS WILD-TYPE | 305 | 44 |
P value = 0.00143 (Fisher's exact test), Q value = 0.029
nPatients | COLON ADENOCARCINOMA | COLON MUCINOUS ADENOCARCINOMA | RECTAL ADENOCARCINOMA | RECTAL MUCINOUS ADENOCARCINOMA |
---|---|---|---|---|
ALL | 382 | 62 | 146 | 13 |
8P LOSS MUTATED | 126 | 12 | 67 | 5 |
8P LOSS WILD-TYPE | 256 | 50 | 79 | 8 |
P value = 1.86e-05 (Wilcoxon-test), Q value = 0.0014
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 580 | 2.2 (4.7) |
8P LOSS MUTATED | 206 | 3.3 (6.2) |
8P LOSS WILD-TYPE | 374 | 1.6 (3.5) |
P value = 0.0212 (Fisher's exact test), Q value = 0.15
nPatients | COLON ADENOCARCINOMA | COLON MUCINOUS ADENOCARCINOMA | RECTAL ADENOCARCINOMA | RECTAL MUCINOUS ADENOCARCINOMA |
---|---|---|---|---|
ALL | 382 | 62 | 146 | 13 |
9P LOSS MUTATED | 50 | 1 | 21 | 1 |
9P LOSS WILD-TYPE | 332 | 61 | 125 | 12 |
P value = 0.0136 (Fisher's exact test), Q value = 0.12
nPatients | R0 | R1 | R2 | RX |
---|---|---|---|---|
ALL | 446 | 6 | 37 | 29 |
9P LOSS MUTATED | 48 | 3 | 8 | 3 |
9P LOSS WILD-TYPE | 398 | 3 | 29 | 26 |
P value = 0.0355 (Fisher's exact test), Q value = 0.21
nPatients | 0 | 1 |
---|---|---|
ALL | 453 | 88 |
9Q LOSS MUTATED | 52 | 18 |
9Q LOSS WILD-TYPE | 401 | 70 |
P value = 0.0201 (Fisher's exact test), Q value = 0.15
nPatients | COLON ADENOCARCINOMA | COLON MUCINOUS ADENOCARCINOMA | RECTAL ADENOCARCINOMA | RECTAL MUCINOUS ADENOCARCINOMA |
---|---|---|---|---|
ALL | 382 | 62 | 146 | 13 |
9Q LOSS MUTATED | 51 | 1 | 21 | 1 |
9Q LOSS WILD-TYPE | 331 | 61 | 125 | 12 |
P value = 0.02 (Fisher's exact test), Q value = 0.15
nPatients | HISPANIC OR LATINO | NOT HISPANIC OR LATINO |
---|---|---|
ALL | 5 | 352 |
9Q LOSS MUTATED | 3 | 46 |
9Q LOSS WILD-TYPE | 2 | 306 |
P value = 0.00327 (Wilcoxon-test), Q value = 0.047
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 612 | 66.3 (12.8) |
10P LOSS MUTATED | 101 | 62.7 (13.3) |
10P LOSS WILD-TYPE | 511 | 67.0 (12.6) |
P value = 0.00995 (Fisher's exact test), Q value = 0.1
nPatients | NO | YES |
---|---|---|
ALL | 482 | 29 |
10P LOSS MUTATED | 81 | 11 |
10P LOSS WILD-TYPE | 401 | 18 |
P value = 0.0209 (Fisher's exact test), Q value = 0.15
nPatients | COLON ADENOCARCINOMA | COLON MUCINOUS ADENOCARCINOMA | RECTAL ADENOCARCINOMA | RECTAL MUCINOUS ADENOCARCINOMA |
---|---|---|---|---|
ALL | 382 | 62 | 146 | 13 |
10P LOSS MUTATED | 61 | 6 | 27 | 6 |
10P LOSS WILD-TYPE | 321 | 56 | 119 | 7 |
P value = 0.0233 (Wilcoxon-test), Q value = 0.16
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 580 | 2.2 (4.7) |
10P LOSS MUTATED | 96 | 2.7 (4.5) |
10P LOSS WILD-TYPE | 484 | 2.1 (4.7) |
P value = 0.0085 (Wilcoxon-test), Q value = 0.091
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 612 | 66.3 (12.8) |
10Q LOSS MUTATED | 110 | 63.3 (12.7) |
10Q LOSS WILD-TYPE | 502 | 66.9 (12.7) |
P value = 0.006 (Fisher's exact test), Q value = 0.075
nPatients | NO | YES |
---|---|---|
ALL | 482 | 29 |
10Q LOSS MUTATED | 88 | 12 |
10Q LOSS WILD-TYPE | 394 | 17 |
P value = 0.0152 (Fisher's exact test), Q value = 0.13
nPatients | COLON ADENOCARCINOMA | COLON MUCINOUS ADENOCARCINOMA | RECTAL ADENOCARCINOMA | RECTAL MUCINOUS ADENOCARCINOMA |
---|---|---|---|---|
ALL | 382 | 62 | 146 | 13 |
10Q LOSS MUTATED | 66 | 6 | 31 | 6 |
10Q LOSS WILD-TYPE | 316 | 56 | 115 | 7 |
P value = 0.0102 (Fisher's exact test), Q value = 0.1
nPatients | N0 | N1 | N2 |
---|---|---|---|
ALL | 346 | 150 | 115 |
11P LOSS MUTATED | 30 | 24 | 20 |
11P LOSS WILD-TYPE | 316 | 126 | 95 |
P value = 0.000373 (Wilcoxon-test), Q value = 0.013
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 580 | 2.2 (4.7) |
11P LOSS MUTATED | 70 | 3.8 (6.0) |
11P LOSS WILD-TYPE | 510 | 2.0 (4.4) |
P value = 0.0398 (Wilcoxon-test), Q value = 0.22
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 580 | 2.2 (4.7) |
11Q LOSS MUTATED | 87 | 2.9 (5.5) |
11Q LOSS WILD-TYPE | 493 | 2.1 (4.5) |
P value = 0.0115 (Fisher's exact test), Q value = 0.11
nPatients | COLON ADENOCARCINOMA | COLON MUCINOUS ADENOCARCINOMA | RECTAL ADENOCARCINOMA | RECTAL MUCINOUS ADENOCARCINOMA |
---|---|---|---|---|
ALL | 382 | 62 | 146 | 13 |
12P LOSS MUTATED | 47 | 1 | 22 | 0 |
12P LOSS WILD-TYPE | 335 | 61 | 124 | 13 |
P value = 0.0289 (Wilcoxon-test), Q value = 0.18
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 580 | 2.2 (4.7) |
12P LOSS MUTATED | 69 | 2.5 (4.0) |
12P LOSS WILD-TYPE | 511 | 2.2 (4.8) |
P value = 0.0301 (Fisher's exact test), Q value = 0.19
nPatients | N0 | N1 | N2 |
---|---|---|---|
ALL | 346 | 150 | 115 |
12Q LOSS MUTATED | 30 | 22 | 19 |
12Q LOSS WILD-TYPE | 316 | 128 | 96 |
P value = 0.00642 (Wilcoxon-test), Q value = 0.077
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 580 | 2.2 (4.7) |
12Q LOSS MUTATED | 68 | 3.0 (5.0) |
12Q LOSS WILD-TYPE | 512 | 2.1 (4.7) |
P value = 0.0459 (Fisher's exact test), Q value = 0.24
nPatients | COLON ADENOCARCINOMA | COLON MUCINOUS ADENOCARCINOMA | RECTAL ADENOCARCINOMA | RECTAL MUCINOUS ADENOCARCINOMA |
---|---|---|---|---|
ALL | 382 | 62 | 146 | 13 |
13Q LOSS MUTATED | 8 | 3 | 4 | 2 |
13Q LOSS WILD-TYPE | 374 | 59 | 142 | 11 |
P value = 0.0283 (Wilcoxon-test), Q value = 0.18
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 580 | 2.2 (4.7) |
13Q LOSS MUTATED | 15 | 8.8 (14.2) |
13Q LOSS WILD-TYPE | 565 | 2.0 (4.1) |
P value = 0.0199 (Fisher's exact test), Q value = 0.15
nPatients | COLON | RECTUM |
---|---|---|
ALL | 448 | 162 |
14Q LOSS MUTATED | 137 | 66 |
14Q LOSS WILD-TYPE | 311 | 96 |
P value = 0.0379 (Fisher's exact test), Q value = 0.21
nPatients | N0 | N1 | N2 |
---|---|---|---|
ALL | 346 | 150 | 115 |
14Q LOSS MUTATED | 105 | 63 | 36 |
14Q LOSS WILD-TYPE | 241 | 87 | 79 |
P value = 0.0489 (Fisher's exact test), Q value = 0.25
nPatients | 0 | 1 |
---|---|---|
ALL | 453 | 88 |
14Q LOSS MUTATED | 145 | 38 |
14Q LOSS WILD-TYPE | 308 | 50 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00089
nPatients | COLON ADENOCARCINOMA | COLON MUCINOUS ADENOCARCINOMA | RECTAL ADENOCARCINOMA | RECTAL MUCINOUS ADENOCARCINOMA |
---|---|---|---|---|
ALL | 382 | 62 | 146 | 13 |
14Q LOSS MUTATED | 131 | 3 | 64 | 1 |
14Q LOSS WILD-TYPE | 251 | 59 | 82 | 12 |
P value = 0.0192 (Fisher's exact test), Q value = 0.15
nPatients | N0 | N1 | N2 |
---|---|---|---|
ALL | 346 | 150 | 115 |
15Q LOSS MUTATED | 113 | 66 | 50 |
15Q LOSS WILD-TYPE | 233 | 84 | 65 |
P value = 0.00819 (Fisher's exact test), Q value = 0.091
nPatients | 0 | 1 |
---|---|---|
ALL | 453 | 88 |
15Q LOSS MUTATED | 158 | 44 |
15Q LOSS WILD-TYPE | 295 | 44 |
P value = 0.00787 (Fisher's exact test), Q value = 0.089
nPatients | COLON ADENOCARCINOMA | COLON MUCINOUS ADENOCARCINOMA | RECTAL ADENOCARCINOMA | RECTAL MUCINOUS ADENOCARCINOMA |
---|---|---|---|---|
ALL | 382 | 62 | 146 | 13 |
15Q LOSS MUTATED | 142 | 12 | 64 | 5 |
15Q LOSS WILD-TYPE | 240 | 50 | 82 | 8 |
P value = 0.00586 (Wilcoxon-test), Q value = 0.074
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 580 | 2.2 (4.7) |
15Q LOSS MUTATED | 215 | 2.7 (4.9) |
15Q LOSS WILD-TYPE | 365 | 1.9 (4.5) |
P value = 0.027 (Fisher's exact test), Q value = 0.18
nPatients | COLON | RECTUM |
---|---|---|
ALL | 448 | 162 |
17P LOSS MUTATED | 233 | 101 |
17P LOSS WILD-TYPE | 215 | 61 |
P value = 0.00208 (Fisher's exact test), Q value = 0.034
nPatients | STAGE I | STAGE IA | STAGE II | STAGE IIA | STAGE IIB | STAGE IIC | STAGE III | STAGE IIIA | STAGE IIIB | STAGE IIIC | STAGE IV | STAGE IVA | STAGE IVB |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 104 | 1 | 37 | 172 | 12 | 2 | 24 | 15 | 84 | 55 | 63 | 24 | 2 |
17P LOSS MUTATED | 45 | 0 | 19 | 84 | 4 | 2 | 12 | 12 | 47 | 37 | 44 | 16 | 2 |
17P LOSS WILD-TYPE | 59 | 1 | 18 | 88 | 8 | 0 | 12 | 3 | 37 | 18 | 19 | 8 | 0 |
P value = 0.00109 (Fisher's exact test), Q value = 0.023
nPatients | N0 | N1 | N2 |
---|---|---|---|
ALL | 346 | 150 | 115 |
17P LOSS MUTATED | 168 | 94 | 74 |
17P LOSS WILD-TYPE | 178 | 56 | 41 |
P value = 0.00221 (Fisher's exact test), Q value = 0.035
nPatients | 0 | 1 |
---|---|---|
ALL | 453 | 88 |
17P LOSS MUTATED | 238 | 62 |
17P LOSS WILD-TYPE | 215 | 26 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00089
nPatients | COLON ADENOCARCINOMA | COLON MUCINOUS ADENOCARCINOMA | RECTAL ADENOCARCINOMA | RECTAL MUCINOUS ADENOCARCINOMA |
---|---|---|---|---|
ALL | 382 | 62 | 146 | 13 |
17P LOSS MUTATED | 216 | 14 | 94 | 6 |
17P LOSS WILD-TYPE | 166 | 48 | 52 | 7 |
P value = 0.00047 (Wilcoxon-test), Q value = 0.015
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 580 | 2.2 (4.7) |
17P LOSS MUTATED | 319 | 2.7 (5.3) |
17P LOSS WILD-TYPE | 261 | 1.7 (3.8) |
P value = 0.014 (Fisher's exact test), Q value = 0.13
nPatients | N0 | N1 | N2 |
---|---|---|---|
ALL | 346 | 150 | 115 |
17Q LOSS MUTATED | 40 | 29 | 24 |
17Q LOSS WILD-TYPE | 306 | 121 | 91 |
P value = 0.00155 (Wilcoxon-test), Q value = 0.03
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 580 | 2.2 (4.7) |
17Q LOSS MUTATED | 87 | 3.5 (6.8) |
17Q LOSS WILD-TYPE | 493 | 2.0 (4.2) |
P value = 7.77e-07 (Fisher's exact test), Q value = 0.00041
nPatients | COLON | RECTUM |
---|---|---|
ALL | 448 | 162 |
18P LOSS MUTATED | 251 | 126 |
18P LOSS WILD-TYPE | 197 | 36 |
P value = 8e-05 (Fisher's exact test), Q value = 0.0045
nPatients | STAGE I | STAGE IA | STAGE II | STAGE IIA | STAGE IIB | STAGE IIC | STAGE III | STAGE IIIA | STAGE IIIB | STAGE IIIC | STAGE IV | STAGE IVA | STAGE IVB |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 104 | 1 | 37 | 172 | 12 | 2 | 24 | 15 | 84 | 55 | 63 | 24 | 2 |
18P LOSS MUTATED | 58 | 0 | 17 | 98 | 5 | 2 | 10 | 12 | 55 | 37 | 50 | 22 | 1 |
18P LOSS WILD-TYPE | 46 | 1 | 20 | 74 | 7 | 0 | 14 | 3 | 29 | 18 | 13 | 2 | 1 |
P value = 0.00317 (Fisher's exact test), Q value = 0.047
nPatients | N0 | N1 | N2 |
---|---|---|---|
ALL | 346 | 150 | 115 |
18P LOSS MUTATED | 194 | 106 | 78 |
18P LOSS WILD-TYPE | 152 | 44 | 37 |
P value = 1.11e-05 (Fisher's exact test), Q value = 0.00091
nPatients | 0 | 1 |
---|---|---|
ALL | 453 | 88 |
18P LOSS MUTATED | 266 | 73 |
18P LOSS WILD-TYPE | 187 | 15 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00089
nPatients | COLON ADENOCARCINOMA | COLON MUCINOUS ADENOCARCINOMA | RECTAL ADENOCARCINOMA | RECTAL MUCINOUS ADENOCARCINOMA |
---|---|---|---|---|
ALL | 382 | 62 | 146 | 13 |
18P LOSS MUTATED | 237 | 11 | 119 | 7 |
18P LOSS WILD-TYPE | 145 | 51 | 27 | 6 |
P value = 0.0028 (Wilcoxon-test), Q value = 0.042
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 580 | 2.2 (4.7) |
18P LOSS MUTATED | 358 | 2.4 (4.9) |
18P LOSS WILD-TYPE | 222 | 1.9 (4.4) |
P value = 0.0326 (Wilcoxon-test), Q value = 0.2
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 612 | 66.3 (12.8) |
18Q LOSS MUTATED | 407 | 65.6 (12.2) |
18Q LOSS WILD-TYPE | 205 | 67.5 (13.8) |
P value = 4.06e-08 (Fisher's exact test), Q value = 4.3e-05
nPatients | COLON | RECTUM |
---|---|---|
ALL | 448 | 162 |
18Q LOSS MUTATED | 269 | 135 |
18Q LOSS WILD-TYPE | 179 | 27 |
P value = 0.00011 (Fisher's exact test), Q value = 0.0053
nPatients | STAGE I | STAGE IA | STAGE II | STAGE IIA | STAGE IIB | STAGE IIC | STAGE III | STAGE IIIA | STAGE IIIB | STAGE IIIC | STAGE IV | STAGE IVA | STAGE IVB |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 104 | 1 | 37 | 172 | 12 | 2 | 24 | 15 | 84 | 55 | 63 | 24 | 2 |
18Q LOSS MUTATED | 59 | 0 | 21 | 104 | 5 | 2 | 13 | 13 | 59 | 40 | 52 | 22 | 1 |
18Q LOSS WILD-TYPE | 45 | 1 | 16 | 68 | 7 | 0 | 11 | 2 | 25 | 15 | 11 | 2 | 1 |
P value = 0.00023 (Fisher's exact test), Q value = 0.0088
nPatients | N0 | N1 | N2 |
---|---|---|---|
ALL | 346 | 150 | 115 |
18Q LOSS MUTATED | 205 | 113 | 86 |
18Q LOSS WILD-TYPE | 141 | 37 | 29 |
P value = 5.81e-05 (Fisher's exact test), Q value = 0.0039
nPatients | 0 | 1 |
---|---|---|
ALL | 453 | 88 |
18Q LOSS MUTATED | 289 | 75 |
18Q LOSS WILD-TYPE | 164 | 13 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00089
nPatients | COLON ADENOCARCINOMA | COLON MUCINOUS ADENOCARCINOMA | RECTAL ADENOCARCINOMA | RECTAL MUCINOUS ADENOCARCINOMA |
---|---|---|---|---|
ALL | 382 | 62 | 146 | 13 |
18Q LOSS MUTATED | 252 | 14 | 124 | 10 |
18Q LOSS WILD-TYPE | 130 | 48 | 22 | 3 |
P value = 0.000441 (Wilcoxon-test), Q value = 0.014
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 580 | 2.2 (4.7) |
18Q LOSS MUTATED | 385 | 2.4 (4.8) |
18Q LOSS WILD-TYPE | 195 | 1.8 (4.6) |
P value = 0.00091 (Fisher's exact test), Q value = 0.021
nPatients | STAGE I | STAGE IA | STAGE II | STAGE IIA | STAGE IIB | STAGE IIC | STAGE III | STAGE IIIA | STAGE IIIB | STAGE IIIC | STAGE IV | STAGE IVA | STAGE IVB |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 104 | 1 | 37 | 172 | 12 | 2 | 24 | 15 | 84 | 55 | 63 | 24 | 2 |
19P LOSS MUTATED | 7 | 0 | 2 | 10 | 2 | 1 | 5 | 1 | 5 | 10 | 9 | 7 | 1 |
19P LOSS WILD-TYPE | 97 | 1 | 35 | 162 | 10 | 1 | 19 | 14 | 79 | 45 | 54 | 17 | 1 |
P value = 0.00016 (Fisher's exact test), Q value = 0.0068
nPatients | N0 | N1 | N2 |
---|---|---|---|
ALL | 346 | 150 | 115 |
19P LOSS MUTATED | 23 | 15 | 24 |
19P LOSS WILD-TYPE | 323 | 135 | 91 |
P value = 0.0101 (Fisher's exact test), Q value = 0.1
nPatients | 0 | 1 |
---|---|---|
ALL | 453 | 88 |
19P LOSS MUTATED | 38 | 16 |
19P LOSS WILD-TYPE | 415 | 72 |
P value = 6.04e-06 (Wilcoxon-test), Q value = 0.00089
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 580 | 2.2 (4.7) |
19P LOSS MUTATED | 58 | 4.5 (6.0) |
19P LOSS WILD-TYPE | 522 | 2.0 (4.5) |
P value = 0.0109 (Fisher's exact test), Q value = 0.11
nPatients | STAGE I | STAGE IA | STAGE II | STAGE IIA | STAGE IIB | STAGE IIC | STAGE III | STAGE IIIA | STAGE IIIB | STAGE IIIC | STAGE IV | STAGE IVA | STAGE IVB |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 104 | 1 | 37 | 172 | 12 | 2 | 24 | 15 | 84 | 55 | 63 | 24 | 2 |
19Q LOSS MUTATED | 7 | 0 | 2 | 11 | 1 | 1 | 5 | 0 | 5 | 8 | 7 | 6 | 1 |
19Q LOSS WILD-TYPE | 97 | 1 | 35 | 161 | 11 | 1 | 19 | 15 | 79 | 47 | 56 | 18 | 1 |
P value = 0.00161 (Fisher's exact test), Q value = 0.03
nPatients | N0 | N1 | N2 |
---|---|---|---|
ALL | 346 | 150 | 115 |
19Q LOSS MUTATED | 23 | 12 | 21 |
19Q LOSS WILD-TYPE | 323 | 138 | 94 |
P value = 0.000446 (Wilcoxon-test), Q value = 0.014
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 580 | 2.2 (4.7) |
19Q LOSS MUTATED | 53 | 4.3 (6.2) |
19Q LOSS WILD-TYPE | 527 | 2.0 (4.5) |
P value = 0.00156 (Fisher's exact test), Q value = 0.03
nPatients | COLON | RECTUM |
---|---|---|
ALL | 448 | 162 |
21Q LOSS MUTATED | 124 | 67 |
21Q LOSS WILD-TYPE | 324 | 95 |
P value = 0.0139 (Fisher's exact test), Q value = 0.13
nPatients | N0 | N1 | N2 |
---|---|---|---|
ALL | 346 | 150 | 115 |
21Q LOSS MUTATED | 93 | 51 | 47 |
21Q LOSS WILD-TYPE | 253 | 99 | 68 |
P value = 0.00023 (Fisher's exact test), Q value = 0.0088
nPatients | COLON ADENOCARCINOMA | COLON MUCINOUS ADENOCARCINOMA | RECTAL ADENOCARCINOMA | RECTAL MUCINOUS ADENOCARCINOMA |
---|---|---|---|---|
ALL | 382 | 62 | 146 | 13 |
21Q LOSS MUTATED | 116 | 8 | 62 | 3 |
21Q LOSS WILD-TYPE | 266 | 54 | 84 | 10 |
P value = 0.00702 (Wilcoxon-test), Q value = 0.082
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 580 | 2.2 (4.7) |
21Q LOSS MUTATED | 185 | 3.3 (6.7) |
21Q LOSS WILD-TYPE | 395 | 1.7 (3.3) |
P value = 0.0376 (Fisher's exact test), Q value = 0.21
nPatients | HISPANIC OR LATINO | NOT HISPANIC OR LATINO |
---|---|---|
ALL | 5 | 352 |
21Q LOSS MUTATED | 4 | 110 |
21Q LOSS WILD-TYPE | 1 | 242 |
P value = 0.00209 (Fisher's exact test), Q value = 0.034
nPatients | STAGE I | STAGE IA | STAGE II | STAGE IIA | STAGE IIB | STAGE IIC | STAGE III | STAGE IIIA | STAGE IIIB | STAGE IIIC | STAGE IV | STAGE IVA | STAGE IVB |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 104 | 1 | 37 | 172 | 12 | 2 | 24 | 15 | 84 | 55 | 63 | 24 | 2 |
22Q LOSS MUTATED | 24 | 0 | 10 | 46 | 1 | 0 | 7 | 9 | 29 | 23 | 31 | 11 | 0 |
22Q LOSS WILD-TYPE | 80 | 1 | 27 | 126 | 11 | 2 | 17 | 6 | 55 | 32 | 32 | 13 | 2 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00089
nPatients | N0 | N1 | N2 |
---|---|---|---|
ALL | 346 | 150 | 115 |
22Q LOSS MUTATED | 86 | 67 | 46 |
22Q LOSS WILD-TYPE | 260 | 83 | 69 |
P value = 0.00266 (Fisher's exact test), Q value = 0.04
nPatients | 0 | 1 |
---|---|---|
ALL | 453 | 88 |
22Q LOSS MUTATED | 134 | 41 |
22Q LOSS WILD-TYPE | 319 | 47 |
P value = 0.0202 (Fisher's exact test), Q value = 0.15
nPatients | COLON ADENOCARCINOMA | COLON MUCINOUS ADENOCARCINOMA | RECTAL ADENOCARCINOMA | RECTAL MUCINOUS ADENOCARCINOMA |
---|---|---|---|---|
ALL | 382 | 62 | 146 | 13 |
22Q LOSS MUTATED | 134 | 10 | 51 | 4 |
22Q LOSS WILD-TYPE | 248 | 52 | 95 | 9 |
P value = 0.000189 (Wilcoxon-test), Q value = 0.0078
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 580 | 2.2 (4.7) |
22Q LOSS MUTATED | 190 | 2.9 (5.1) |
22Q LOSS WILD-TYPE | 390 | 1.9 (4.5) |
P value = 0.0324 (Fisher's exact test), Q value = 0.2
nPatients | N0 | N1 | N2 |
---|---|---|---|
ALL | 346 | 150 | 115 |
XP LOSS MUTATED | 43 | 21 | 26 |
XP LOSS WILD-TYPE | 303 | 129 | 89 |
P value = 0.0176 (Wilcoxon-test), Q value = 0.14
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 580 | 2.2 (4.7) |
XP LOSS MUTATED | 85 | 3.2 (5.4) |
XP LOSS WILD-TYPE | 495 | 2.1 (4.6) |
P value = 0.0164 (Fisher's exact test), Q value = 0.14
nPatients | 0 | 1 |
---|---|---|
ALL | 453 | 88 |
XQ LOSS MUTATED | 53 | 19 |
XQ LOSS WILD-TYPE | 400 | 69 |
-
Copy number data file = broad_values_by_arm.txt from GISTIC pipeline
-
Processed Copy number data file = /xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/COADREAD-TP/22524545/transformed.cor.cli.txt
-
Clinical data file = /xchip/cga/gdac-prod/tcga-gdac/jobResults/Append_Data/COADREAD-TP/22506534/COADREAD-TP.merged_data.txt
-
Number of patients = 614
-
Number of significantly arm-level cnvs = 82
-
Number of selected clinical features = 13
-
Exclude regions that fewer than K tumors have mutations, K = 3
For survival clinical features, the Kaplan-Meier survival curves of tumors with and without gene mutations were plotted and the statistical significance P values were estimated by logrank test (Bland and Altman 2004) using the 'survdiff' function in R
For binary or multi-class clinical features (nominal or ordinal), two-tailed Fisher's exact tests (Fisher 1922) were used to estimate the P values using the 'fisher.test' function in R
For multiple hypothesis correction, Q value is the False Discovery Rate (FDR) analogue of the P value (Benjamini and Hochberg 1995), defined as the minimum FDR at which the test may be called significant. We used the 'Benjamini and Hochberg' method of 'p.adjust' function in R to convert P values into Q values.
In addition to the links below, the full results of the analysis summarized in this report can also be downloaded programmatically using firehose_get, or interactively from either the Broad GDAC website or TCGA Data Coordination Center Portal.