Clinical Features	CN_CNMF		METHLYATION_CNMF		RPPA_CNMF		RPPA_CHIERARCHICAL		MRNASEQ_CNMF		MRNASEQ_CHIERARCHICAL		MIRSEQ_CNMF		MIRSEQ_CHIERARCHICAL		MIRSEQ_MATURE_CNMF		MIRSEQ_MATURE_CHIERARCHICAL	
	nCNV (%)	nWild-Type	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
amp_1q24.2	16 (33%)	32	0.84308	1	0.44543	0.797	0.45646	0.806	0.51194	0.823	0.45421	0.805	0.50936	0.823	0.64077	0.939	0.45948	0.806	0.96751	1	0.90419	1
amp_2p16.1	16 (33%)	32	0.54634	0.839	0.099169	0.517	0.066369	0.504	0.2708	0.723	0.00117	0.0913	0.050529	0.504	0.3979	0.779	0.01232	0.286	0.03835	0.465	0.38243	0.779
amp_3q27.3	14 (29%)	34	0.00039	0.076	0.46484	0.806	0.51199	0.823	0.25151	0.691	0.11745	0.537	0.097139	0.517	0.18063	0.617	0.29201	0.735	0.69567	0.952	0.53068	0.825
amp_3q29	15 (31%)	33	0.00019	0.0741	0.33166	0.761	0.41803	0.78	0.10898	0.537	0.14726	0.606	0.073899	0.504	0.26112	0.712	0.296	0.737	0.69307	0.952	0.78209	0.989
amp_5p13.1	8 (17%)	40	0.27937	0.727	0.082869	0.504	0.9757	1	1	1	0.13713	0.588	0.85189	1	1	1	0.59112	0.894	0.93785	1	0.44759	0.797
amp_7p22.3	16 (33%)	32	0.00448	0.167	0.85381	1	0.81522	1	0.76063	0.981	0.12872	0.57	0.070199	0.504	0.68013	0.952	0.88644	1	0.43777	0.794	0.73734	0.961
amp_7q21.3	15 (31%)	33	0.0026	0.127	0.43622	0.794	0.82445	1	1	1	0.19608	0.617	0.42185	0.783	0.67879	0.952	0.88666	1	0.099469	0.517	0.4103	0.78
amp_8q24.23	14 (29%)	34	0.51834	0.823	0.43546	0.794	0.973	1	0.78335	0.989	0.21134	0.629	0.35446	0.765	0.061379	0.504	0.19612	0.617	0.19631	0.617	0.20313	0.624
amp_12q21.1	14 (29%)	34	0.077009	0.504	0.20723	0.624	0.9532	1	0.71421	0.952	0.16389	0.617	0.63561	0.935	0.52488	0.823	0.072799	0.504	0.068629	0.504	0.11353	0.537
amp_16p12.2	10 (21%)	38	0.39286	0.779	0.11845	0.537	0.30572	0.737	0.85887	1	0.02247	0.362	0.087569	0.507	0.28665	0.735	0.04877	0.503	0.19456	0.617	0.15763	0.609
amp_18q21.2	16 (33%)	32	0.00109	0.0913	0.39207	0.779	0.01497	0.307	0.71508	0.952	0.52644	0.823	0.38384	0.779	0.085909	0.507	0.02895	0.382	0.26634	0.721	0.04884	0.503
amp_19q13.43	10 (21%)	38	0.04902	0.503	0.59639	0.895	0.82326	1	1	1	0.083639	0.504	0.88215	1	0.36566	0.771	0.27864	0.727	0.2795	0.727	0.01576	0.307
amp_xq28	8 (17%)	40	0.52263	0.823	0.20776	0.624	0.97469	1	0.44261	0.795	0.17166	0.617	0.36783	0.771	0.098279	0.517	0.02318	0.362	0.22276	0.651	0.41344	0.78
del_1p36.32	11 (23%)	37	0.72153	0.957	0.51501	0.823	0.71019	0.952	0.546	0.839	0.15401	0.606	0.4161	0.78	0.91565	1	0.70182	0.952	0.40353	0.779	1	1
del_1p13.1	12 (25%)	36	0.39247	0.779	0.6673	0.95	0.95266	1	0.34568	0.765	0.65654	0.95	0.83837	1	0.41449	0.78	0.76472	0.981	0.92151	1	0.25113	0.691
del_1q43	10 (21%)	38	0.18795	0.617	0.88748	1	0.30803	0.737	0.04746	0.503	0.49666	0.823	0.31899	0.747	1	1	0.84207	1	1	1	0.89605	1
del_2q23.1	8 (17%)	40	0.22369	0.651	0.89854	1	0.41196	0.78	0.13238	0.574	0.70122	0.952	0.56176	0.856	0.59538	0.895	0.52293	0.823	0.46927	0.806	1	1
del_3p21.31	8 (17%)	40	0.66892	0.95	0.3531	0.765	0.80558	1	0.71017	0.952	0.84834	1	0.14582	0.606	0.088479	0.507	0.77554	0.987	0.03934	0.465	0.03466	0.436
del_4q35.1	10 (21%)	38	0.062689	0.504	0.49129	0.823	0.16685	0.617	0.3462	0.765	0.79449	1	0.69246	0.952	0.66981	0.95	0.15207	0.606	0.35507	0.765	0.28726	0.735
del_5q33.3	4 (8%)	44	0.64463	0.942	0.38022	0.779	NA	NA	NA	NA	0.16988	0.617	0.17264	0.617	0.30671	0.737	0.0074999	0.244	0.080319	0.504	0.19578	0.617
del_6p21.32	6 (12%)	42	1	1	0.35298	0.765	0.3473	0.765	0.21881	0.646	0.73431	0.961	0.48495	0.823	0.49651	0.823	0.52214	0.823	0.11449	0.537	0.29777	0.737
del_6q14.1	17 (35%)	31	0.081679	0.504	0.11837	0.537	0.50015	0.823	0.52093	0.823	0.94008	1	0.94526	1	0.17943	0.617	0.1783	0.617	0.196	0.617	0.69032	0.952
del_6q22.32	16 (33%)	32	0.097849	0.517	0.01234	0.286	0.7491	0.971	0.89114	1	0.2388	0.675	0.70671	0.952	0.34175	0.765	0.36721	0.771	0.32745	0.76	0.14301	0.606
del_6q23.3	16 (33%)	32	0.01322	0.286	0.02141	0.362	0.068059	0.504	0.075079	0.504	0.22694	0.656	0.18355	0.617	0.074969	0.504	0.16497	0.617	0.19548	0.617	0.60457	0.9
del_7q33	5 (10%)	43	0.44051	0.795	0.61942	0.919	NA	NA	NA	NA	0.01972	0.362	0.30709	0.737	0.85803	1	0.17824	0.617	0.91228	1	0.91145	1
del_8p23.2	12 (25%)	36	0.13188	0.574	0.58397	0.886	0.7375	0.961	0.51205	0.823	0.40068	0.779	1	1	0.77673	0.987	0.079739	0.504	0.76314	0.981	0.60026	0.897
del_8q12.1	9 (19%)	39	0.00472	0.167	0.31995	0.747	0.29063	0.735	0.04408	0.503	0.10667	0.537	0.95192	1	0.14992	0.606	0.40657	0.78	0.62864	0.929	0.081169	0.504
del_9p21.3	17 (35%)	31	0.0085499	0.252	0.00073999	0.0913	0.7393	0.961	0.71054	0.952	0.0090599	0.252	0.091119	0.515	0.18026	0.617	0.02935	0.382	0.02056	0.362	0.00382	0.166
del_10q23.31	7 (15%)	41	0.46865	0.806	0.079249	0.504	NA	NA	NA	NA	0.02617	0.382	0.12715	0.57	0.054789	0.504	0.24629	0.691	0.28874	0.735	0.00185	0.109
del_12p13.2	8 (17%)	40	0.00195	0.109	0.11035	0.537	0.92162	1	0.81455	1	0.23577	0.675	0.94091	1	0.39491	0.779	0.95473	1	0.50581	0.823	0.20165	0.624
del_13q14.2	7 (15%)	41	1	1	0.078839	0.504	0.39393	0.779	0.27407	0.727	0.01291	0.286	0.37657	0.779	0.46742	0.806	0.24929	0.691	0.23772	0.675	0.11387	0.537
del_15q21.1	13 (27%)	35	0.6817	0.952	0.084029	0.504	0.84326	1	0.73088	0.961	0.53312	0.825	0.30508	0.737	0.91501	1	0.66473	0.95	0.83845	1	0.2079	0.624
del_16p13.13	6 (12%)	42	0.50295	0.823	0.81206	1	0.14834	0.606	0.15531	0.606	0.29918	0.737	0.81009	1	0.67002	0.95	0.02905	0.382	0.31529	0.745	0.89473	1
del_16q23.1	5 (10%)	43	0.11163	0.537	0.34132	0.765	0.26976	0.723	0.36689	0.771	0.48724	0.823	0.7077	0.952	0.071369	0.504	0.16596	0.617	0.34245	0.765	0.40224	0.779
del_17p13.1	13 (27%)	35	0.064359	0.504	0.65443	0.95	0.80587	1	0.88318	1	0.36716	0.771	0.9619	1	1	1	0.50819	0.823	0.40359	0.779	0.31086	0.739
del_17q24.1	8 (17%)	40	0.39234	0.779	0.096429	0.517	0.34162	0.765	0.16942	0.617	0.055549	0.504	0.10958	0.537	0.70015	0.952	0.02883	0.382	0.079999	0.504	0.067589	0.504
del_19p13.2	4 (8%)	44	0.50347	0.823	0.89739	1	NA	NA	NA	NA	0.18295	0.617	0.19865	0.62	0.67754	0.952	0.42543	0.786	1	1	0.89693	1
del_19q13.2	5 (10%)	43	0.83594	1	0.42808	0.787	NA	NA	NA	NA	0.89851	1	1	1	0.85989	1	0.66076	0.95	1	1	0.72402	0.957
del_22q13.31	7 (15%)	41	0.33061	0.761	0.55751	0.853	0.52765	0.823	0.836	1	0.15324	0.606	0.46748	0.806	0.77645	0.987	0.90836	1	0.40004	0.779	1	1