This pipeline computes the correlation between significant arm-level copy number variations (cnvs) and molecular subtypes.
Testing the association between copy number variation 82 arm-level events and 10 molecular subtypes across 184 patients, 250 significant findings detected with P value < 0.05 and Q value < 0.25.
-
1q gain cnv correlated to 'CN_CNMF'.
-
2p gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.
-
2q gain cnv correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.
-
3p gain cnv correlated to 'CN_CNMF'.
-
3q gain cnv correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.
-
4q gain cnv correlated to 'RPPA_CNMF' and 'RPPA_CHIERARCHICAL'.
-
5p gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
-
6p gain cnv correlated to 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
-
7q gain cnv correlated to 'CN_CNMF'.
-
9p gain cnv correlated to 'MIRSEQ_CNMF'.
-
9q gain cnv correlated to 'MIRSEQ_CHIERARCHICAL'.
-
10p gain cnv correlated to 'CN_CNMF' and 'MIRSEQ_CNMF'.
-
10q gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
-
11p gain cnv correlated to 'CN_CNMF'.
-
12p gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
-
12q gain cnv correlated to 'CN_CNMF'.
-
13q gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
-
14q gain cnv correlated to 'CN_CNMF', 'RPPA_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
-
16p gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
-
16q gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
-
17p gain cnv correlated to 'CN_CNMF'.
-
18p gain cnv correlated to 'MIRSEQ_CNMF'.
-
18q gain cnv correlated to 'MIRSEQ_CNMF'.
-
20p gain cnv correlated to 'CN_CNMF'.
-
20q gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
-
22q gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
-
xq gain cnv correlated to 'RPPA_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
-
1p loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
-
1q loss cnv correlated to 'CN_CNMF' and 'MIRSEQ_CNMF'.
-
2p loss cnv correlated to 'MRNASEQ_CNMF' and 'MIRSEQ_CHIERARCHICAL'.
-
2q loss cnv correlated to 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.
-
3p loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
-
4p loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.
-
4q loss cnv correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.
-
5p loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
-
5q loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', and 'MRNASEQ_CNMF'.
-
7q loss cnv correlated to 'MRNASEQ_CNMF'.
-
8p loss cnv correlated to 'CN_CNMF'.
-
9p loss cnv correlated to 'CN_CNMF' and 'MRNASEQ_CNMF'.
-
9q loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', and 'MRNASEQ_CNMF'.
-
10p loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
-
10q loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
-
11q loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
-
12p loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
-
12q loss cnv correlated to 'METHLYATION_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
-
13q loss cnv correlated to 'CN_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
-
14q loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
-
15q loss cnv correlated to 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
-
16p loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
-
16q loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
-
17p loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
-
18p loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
-
18q loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
-
19p loss cnv correlated to 'MIRSEQ_MATURE_CHIERARCHICAL'.
-
19q loss cnv correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.
-
21q loss cnv correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.
-
22q loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
-
xp loss cnv correlated to 'RPPA_CNMF' and 'MRNASEQ_CNMF'.
-
xq loss cnv correlated to 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
Clinical Features |
CN CNMF |
METHLYATION CNMF |
RPPA CNMF |
RPPA CHIERARCHICAL |
MRNASEQ CNMF |
MRNASEQ CHIERARCHICAL |
MIRSEQ CNMF |
MIRSEQ CHIERARCHICAL |
MIRSEQ MATURE CNMF |
MIRSEQ MATURE CHIERARCHICAL |
||
nCNV (%) | nWild-Type | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | |
22q gain | 31 (17%) | 153 |
1e-05 (0.000586) |
3e-05 (0.00082) |
0.00411 (0.0296) |
0.00054 (0.00692) |
1e-05 (0.000586) |
3e-05 (0.00082) |
0.0002 (0.00315) |
1e-05 (0.000586) |
1e-05 (0.000586) |
3e-05 (0.00082) |
14q loss | 45 (24%) | 139 |
1e-05 (0.000586) |
0.0198 (0.0918) |
0.00407 (0.0295) |
0.00289 (0.0239) |
0.00442 (0.0307) |
0.0187 (0.088) |
0.0169 (0.0817) |
0.00283 (0.0237) |
0.0419 (0.144) |
0.00251 (0.0216) |
16q loss | 53 (29%) | 131 |
5e-05 (0.00117) |
0.00048 (0.00635) |
0.0368 (0.132) |
0.0288 (0.115) |
0.00046 (0.00618) |
2e-05 (0.000745) |
0.00016 (0.00262) |
2e-05 (0.000745) |
2e-05 (0.000745) |
1e-05 (0.000586) |
12p loss | 34 (18%) | 150 |
0.0229 (0.101) |
0.0297 (0.115) |
0.151 (0.318) |
0.0323 (0.122) |
0.00993 (0.0554) |
0.00167 (0.0159) |
0.0265 (0.109) |
0.00381 (0.0284) |
0.0426 (0.146) |
0.00056 (0.00696) |
22q loss | 73 (40%) | 111 |
2e-05 (0.000745) |
0.0009 (0.00971) |
0.0131 (0.0686) |
0.082 (0.225) |
0.00012 (0.00214) |
6e-05 (0.00133) |
0.00709 (0.0427) |
0.00016 (0.00262) |
1e-05 (0.000586) |
1e-05 (0.000586) |
13q gain | 44 (24%) | 140 |
0.00011 (0.00205) |
0.00117 (0.0118) |
0.221 (0.409) |
0.112 (0.273) |
0.0001 (0.00191) |
2e-05 (0.000745) |
3e-05 (0.00082) |
5e-05 (0.00117) |
5e-05 (0.00117) |
1e-05 (0.000586) |
20q gain | 114 (62%) | 70 |
3e-05 (0.00082) |
0.00194 (0.0179) |
0.151 (0.318) |
0.119 (0.279) |
0.00253 (0.0216) |
0.00399 (0.0292) |
0.00113 (0.0116) |
0.00245 (0.0216) |
0.0227 (0.101) |
0.0002 (0.00315) |
3p loss | 92 (50%) | 92 |
3e-05 (0.00082) |
0.00016 (0.00262) |
0.167 (0.339) |
0.0859 (0.228) |
0.00058 (0.0071) |
1e-05 (0.000586) |
0.00136 (0.0134) |
3e-05 (0.00082) |
0.00107 (0.0112) |
1e-05 (0.000586) |
5p loss | 46 (25%) | 138 |
0.0048 (0.0324) |
0.00083 (0.00932) |
0.388 (0.595) |
0.0522 (0.167) |
4e-05 (0.00106) |
0.0001 (0.00191) |
2e-05 (0.000745) |
3e-05 (0.00082) |
8e-05 (0.00168) |
1e-05 (0.000586) |
10p loss | 51 (28%) | 133 |
0.00147 (0.0142) |
0.00373 (0.0281) |
0.119 (0.279) |
0.383 (0.591) |
0.00725 (0.0429) |
0.00977 (0.0549) |
0.024 (0.104) |
0.00572 (0.0361) |
0.0151 (0.0764) |
0.00258 (0.0218) |
10q loss | 50 (27%) | 134 |
7e-05 (0.00151) |
6e-05 (0.00133) |
0.666 (0.811) |
0.105 (0.26) |
0.0053 (0.0342) |
0.00131 (0.0131) |
0.0242 (0.104) |
0.00184 (0.0173) |
0.00651 (0.0401) |
0.00108 (0.0112) |
16p loss | 54 (29%) | 130 |
0.00075 (0.00866) |
0.00728 (0.0429) |
0.719 (0.841) |
0.685 (0.82) |
0.00322 (0.0261) |
0.0001 (0.00191) |
0.00675 (0.0413) |
0.00024 (0.00358) |
0.00042 (0.00574) |
0.00026 (0.00381) |
17p loss | 72 (39%) | 112 |
0.00012 (0.00214) |
0.00071 (0.00832) |
0.229 (0.421) |
0.303 (0.497) |
0.0157 (0.0783) |
0.00143 (0.014) |
0.00455 (0.0314) |
0.00209 (0.019) |
0.0452 (0.151) |
0.00024 (0.00358) |
18p loss | 69 (38%) | 115 |
2e-05 (0.000745) |
0.018 (0.0859) |
0.235 (0.428) |
0.697 (0.828) |
0.017 (0.0817) |
0.00395 (0.0292) |
0.00368 (0.0281) |
0.0199 (0.0918) |
0.00878 (0.0503) |
0.00566 (0.036) |
18q loss | 103 (56%) | 81 |
5e-05 (0.00117) |
0.0296 (0.115) |
0.425 (0.632) |
0.846 (0.92) |
0.00528 (0.0342) |
0.0191 (0.0895) |
0.00244 (0.0216) |
0.00028 (0.00403) |
0.0435 (0.148) |
0.00016 (0.00262) |
12p gain | 57 (31%) | 127 |
0.00041 (0.0057) |
0.00233 (0.021) |
0.457 (0.654) |
0.0929 (0.239) |
0.00341 (0.0269) |
0.00541 (0.0347) |
0.101 (0.254) |
0.0025 (0.0216) |
0.00876 (0.0503) |
0.0124 (0.0658) |
1p loss | 38 (21%) | 146 |
0.00088 (0.00962) |
2e-05 (0.000745) |
0.858 (0.923) |
0.917 (0.956) |
0.00093 (0.0099) |
0.0375 (0.133) |
0.0936 (0.24) |
0.031 (0.119) |
0.0166 (0.0815) |
0.026 (0.108) |
5p gain | 75 (41%) | 109 |
0.0004 (0.00566) |
0.00365 (0.0281) |
0.414 (0.623) |
0.0919 (0.237) |
0.0359 (0.131) |
0.017 (0.0817) |
0.171 (0.344) |
0.0399 (0.14) |
0.0811 (0.224) |
0.00771 (0.0452) |
14q gain | 49 (27%) | 135 |
0.0247 (0.105) |
0.295 (0.489) |
0.0144 (0.0735) |
0.157 (0.326) |
0.179 (0.356) |
0.0157 (0.0783) |
0.071 (0.205) |
0.034 (0.126) |
0.0162 (0.0798) |
0.0417 (0.144) |
16q gain | 38 (21%) | 146 |
0.00422 (0.0298) |
0.0481 (0.159) |
0.0871 (0.23) |
0.0245 (0.105) |
0.0741 (0.21) |
0.0435 (0.148) |
0.149 (0.317) |
0.0291 (0.115) |
0.0222 (0.0996) |
0.0636 (0.19) |
16p gain | 40 (22%) | 144 |
0.0135 (0.0696) |
0.0369 (0.132) |
0.199 (0.384) |
0.185 (0.364) |
0.142 (0.308) |
0.00502 (0.0332) |
0.167 (0.339) |
0.0373 (0.133) |
0.0488 (0.161) |
0.108 (0.265) |
xq gain | 41 (22%) | 143 |
0.0503 (0.164) |
0.268 (0.457) |
0.0358 (0.131) |
0.082 (0.225) |
0.0273 (0.111) |
0.0264 (0.109) |
0.23 (0.422) |
0.0311 (0.119) |
0.0473 (0.157) |
0.0504 (0.164) |
12q loss | 32 (17%) | 152 |
0.0692 (0.202) |
0.0364 (0.131) |
0.216 (0.405) |
0.0542 (0.171) |
0.0626 (0.188) |
0.0112 (0.0605) |
0.12 (0.279) |
0.0417 (0.144) |
0.0278 (0.112) |
0.0103 (0.057) |
xq loss | 39 (21%) | 145 |
0.29 (0.482) |
0.085 (0.227) |
0.0001 (0.00191) |
0.0261 (0.108) |
0.0105 (0.0576) |
0.0511 (0.165) |
0.0656 (0.194) |
0.00295 (0.0242) |
0.0918 (0.237) |
0.0134 (0.0696) |
2p gain | 61 (33%) | 123 |
0.00336 (0.0267) |
0.00065 (0.00784) |
0.258 (0.448) |
0.215 (0.404) |
0.0249 (0.105) |
0.0911 (0.236) |
0.0614 (0.185) |
0.34 (0.54) |
0.0236 (0.103) |
0.674 (0.814) |
6p gain | 39 (21%) | 145 |
0.134 (0.297) |
0.511 (0.71) |
0.0804 (0.224) |
0.0543 (0.171) |
0.352 (0.555) |
0.12 (0.279) |
0.0293 (0.115) |
0.0226 (0.101) |
0.0185 (0.0878) |
0.0109 (0.0591) |
4p loss | 105 (57%) | 79 |
0.00085 (0.00942) |
0.00416 (0.0297) |
0.242 (0.433) |
0.94 (0.968) |
0.0333 (0.125) |
0.212 (0.403) |
0.771 (0.88) |
0.285 (0.478) |
0.0194 (0.0905) |
0.171 (0.344) |
11q loss | 60 (33%) | 124 |
0.00053 (0.0069) |
0.0222 (0.0996) |
0.928 (0.961) |
0.746 (0.864) |
0.00584 (0.0363) |
0.0285 (0.115) |
0.454 (0.653) |
0.143 (0.308) |
0.141 (0.307) |
0.0844 (0.227) |
10q gain | 31 (17%) | 153 |
0.00372 (0.0281) |
0.0141 (0.0721) |
0.923 (0.96) |
0.831 (0.912) |
0.0727 (0.209) |
0.116 (0.277) |
0.163 (0.335) |
0.0999 (0.253) |
0.218 (0.406) |
0.0321 (0.122) |
2q loss | 18 (10%) | 166 |
0.544 (0.735) |
0.239 (0.431) |
0.849 (0.923) |
0.422 (0.63) |
0.0131 (0.0686) |
0.0325 (0.122) |
0.113 (0.273) |
0.0072 (0.0429) |
0.282 (0.474) |
0.105 (0.26) |
5q loss | 87 (47%) | 97 |
0.00186 (0.0173) |
0.00022 (0.0034) |
0.33 (0.529) |
0.133 (0.297) |
0.00482 (0.0324) |
0.136 (0.299) |
0.103 (0.256) |
0.134 (0.297) |
0.0877 (0.23) |
0.0846 (0.227) |
9q loss | 65 (35%) | 119 |
0.017 (0.0817) |
0.0249 (0.105) |
0.791 (0.888) |
0.261 (0.448) |
0.0298 (0.115) |
0.423 (0.63) |
0.0843 (0.227) |
0.344 (0.544) |
0.215 (0.404) |
0.608 (0.768) |
13q loss | 67 (36%) | 117 |
0.00326 (0.0262) |
0.0731 (0.21) |
0.782 (0.884) |
0.662 (0.808) |
0.15 (0.318) |
0.0336 (0.125) |
0.215 (0.404) |
0.15 (0.318) |
0.0375 (0.133) |
0.0997 (0.253) |
15q loss | 56 (30%) | 128 |
0.0563 (0.176) |
0.134 (0.297) |
0.204 (0.392) |
0.254 (0.447) |
0.0594 (0.181) |
0.0363 (0.131) |
0.551 (0.74) |
0.00432 (0.0303) |
0.305 (0.498) |
0.00055 (0.00694) |
2q gain | 47 (26%) | 137 |
0.00955 (0.054) |
0.0306 (0.118) |
0.117 (0.277) |
0.444 (0.648) |
0.0834 (0.226) |
0.103 (0.256) |
0.554 (0.741) |
0.906 (0.951) |
0.41 (0.62) |
0.527 (0.722) |
3q gain | 77 (42%) | 107 |
1e-05 (0.000586) |
0.00528 (0.0342) |
0.6 (0.765) |
0.257 (0.448) |
0.676 (0.814) |
0.0825 (0.225) |
0.817 (0.903) |
0.238 (0.43) |
0.114 (0.275) |
0.334 (0.534) |
4q gain | 17 (9%) | 167 |
0.261 (0.448) |
0.622 (0.778) |
0.00355 (0.0277) |
0.0047 (0.0321) |
0.145 (0.312) |
0.163 (0.335) |
0.927 (0.961) |
0.744 (0.864) |
0.694 (0.826) |
0.447 (0.648) |
10p gain | 40 (22%) | 144 |
0.00584 (0.0363) |
0.0645 (0.192) |
0.353 (0.555) |
0.458 (0.655) |
0.164 (0.336) |
0.0791 (0.221) |
0.0388 (0.136) |
0.215 (0.404) |
0.183 (0.362) |
0.0752 (0.212) |
1q loss | 22 (12%) | 162 |
0.0494 (0.162) |
0.14 (0.306) |
0.136 (0.299) |
0.584 (0.76) |
0.256 (0.448) |
0.0508 (0.165) |
0.0294 (0.115) |
0.121 (0.281) |
0.0709 (0.205) |
0.0756 (0.212) |
2p loss | 10 (5%) | 174 |
0.571 (0.753) |
0.0554 (0.174) |
0.201 (0.386) |
0.0683 (0.2) |
0.0105 (0.0576) |
0.152 (0.318) |
0.183 (0.362) |
0.0008 (0.00911) |
0.56 (0.747) |
0.19 (0.371) |
4q loss | 88 (48%) | 96 |
1e-05 (0.000586) |
0.00903 (0.0514) |
0.124 (0.284) |
0.713 (0.837) |
0.123 (0.284) |
0.192 (0.375) |
0.445 (0.648) |
0.448 (0.648) |
0.1 (0.253) |
0.115 (0.277) |
9p loss | 100 (54%) | 84 |
0.0217 (0.0984) |
0.455 (0.653) |
0.895 (0.947) |
0.69 (0.824) |
0.0204 (0.0928) |
0.232 (0.424) |
0.503 (0.702) |
0.812 (0.9) |
0.871 (0.929) |
0.646 (0.803) |
19q loss | 52 (28%) | 132 |
0.0422 (0.145) |
0.356 (0.559) |
0.0811 (0.224) |
0.381 (0.589) |
0.223 (0.411) |
0.0274 (0.111) |
0.493 (0.691) |
0.536 (0.729) |
0.0532 (0.17) |
0.282 (0.474) |
21q loss | 108 (59%) | 76 |
0.007 (0.0425) |
0.00855 (0.0497) |
0.26 (0.448) |
0.0894 (0.233) |
0.103 (0.256) |
0.101 (0.254) |
0.136 (0.299) |
0.221 (0.409) |
0.125 (0.286) |
0.0878 (0.23) |
xp loss | 60 (33%) | 124 |
0.243 (0.434) |
0.656 (0.807) |
0.0439 (0.148) |
0.343 (0.543) |
0.0267 (0.109) |
0.809 (0.9) |
0.815 (0.902) |
0.244 (0.434) |
0.601 (0.765) |
0.265 (0.452) |
1q gain | 64 (35%) | 120 |
0.0114 (0.0609) |
0.108 (0.264) |
0.296 (0.489) |
0.0539 (0.171) |
0.162 (0.334) |
0.579 (0.76) |
0.583 (0.76) |
0.654 (0.806) |
0.589 (0.761) |
0.787 (0.885) |
3p gain | 31 (17%) | 153 |
0.00491 (0.0327) |
0.257 (0.448) |
0.835 (0.914) |
0.758 (0.875) |
0.596 (0.765) |
0.308 (0.499) |
0.786 (0.885) |
0.608 (0.768) |
0.924 (0.96) |
0.662 (0.808) |
7q gain | 87 (47%) | 97 |
0.0351 (0.129) |
0.167 (0.339) |
0.718 (0.841) |
0.524 (0.72) |
0.462 (0.659) |
0.466 (0.662) |
0.413 (0.623) |
0.687 (0.821) |
0.859 (0.923) |
0.321 (0.517) |
9p gain | 17 (9%) | 167 |
0.0743 (0.21) |
0.058 (0.179) |
0.619 (0.776) |
0.135 (0.297) |
0.671 (0.814) |
0.658 (0.807) |
0.0407 (0.142) |
0.278 (0.471) |
0.809 (0.9) |
0.566 (0.749) |
9q gain | 34 (18%) | 150 |
0.142 (0.308) |
0.064 (0.191) |
0.159 (0.33) |
0.455 (0.653) |
0.24 (0.431) |
0.536 (0.729) |
0.213 (0.404) |
0.0204 (0.0928) |
0.244 (0.434) |
0.0611 (0.185) |
11p gain | 39 (21%) | 145 |
0.0451 (0.151) |
0.0649 (0.192) |
0.997 (1.00) |
0.838 (0.915) |
0.575 (0.757) |
0.783 (0.884) |
0.214 (0.404) |
0.318 (0.513) |
0.679 (0.814) |
0.704 (0.831) |
12q gain | 37 (20%) | 147 |
0.0297 (0.115) |
0.782 (0.884) |
0.952 (0.973) |
0.561 (0.747) |
0.402 (0.611) |
0.693 (0.826) |
0.75 (0.866) |
0.608 (0.768) |
0.248 (0.44) |
0.418 (0.627) |
17p gain | 32 (17%) | 152 |
0.0158 (0.0787) |
0.702 (0.831) |
0.658 (0.807) |
0.598 (0.765) |
0.0587 (0.181) |
0.0592 (0.181) |
0.287 (0.48) |
0.588 (0.761) |
0.252 (0.444) |
0.472 (0.667) |
18p gain | 50 (27%) | 134 |
0.128 (0.29) |
0.599 (0.765) |
0.303 (0.497) |
0.768 (0.878) |
0.328 (0.527) |
0.336 (0.534) |
0.025 (0.105) |
0.871 (0.929) |
0.741 (0.863) |
0.803 (0.9) |
18q gain | 24 (13%) | 160 |
1 (1.00) |
0.844 (0.92) |
0.584 (0.76) |
0.335 (0.534) |
0.17 (0.342) |
0.86 (0.923) |
0.0113 (0.0605) |
0.11 (0.268) |
0.929 (0.961) |
0.165 (0.337) |
20p gain | 107 (58%) | 77 |
0.0007 (0.00832) |
0.187 (0.367) |
0.488 (0.686) |
0.252 (0.444) |
0.519 (0.718) |
0.261 (0.448) |
0.124 (0.284) |
0.353 (0.555) |
0.523 (0.72) |
0.0734 (0.21) |
7q loss | 23 (12%) | 161 |
0.204 (0.391) |
0.124 (0.284) |
0.706 (0.832) |
0.208 (0.398) |
0.0341 (0.126) |
0.587 (0.761) |
0.76 (0.876) |
0.966 (0.983) |
0.391 (0.598) |
1 (1.00) |
8p loss | 62 (34%) | 122 |
0.0239 (0.104) |
0.609 (0.769) |
0.553 (0.741) |
0.972 (0.987) |
0.465 (0.661) |
0.71 (0.835) |
0.529 (0.725) |
0.805 (0.9) |
0.82 (0.905) |
0.587 (0.761) |
19p loss | 64 (35%) | 120 |
0.147 (0.315) |
0.178 (0.354) |
0.197 (0.382) |
0.856 (0.923) |
0.0986 (0.251) |
0.564 (0.748) |
0.435 (0.641) |
0.385 (0.592) |
0.371 (0.578) |
0.046 (0.153) |
1p gain | 38 (21%) | 146 |
0.199 (0.384) |
0.781 (0.884) |
0.305 (0.498) |
0.19 (0.371) |
0.235 (0.428) |
0.601 (0.765) |
0.307 (0.499) |
0.855 (0.923) |
0.744 (0.864) |
0.852 (0.923) |
4p gain | 17 (9%) | 167 |
0.0976 (0.249) |
0.36 (0.563) |
0.195 (0.379) |
0.17 (0.342) |
0.453 (0.653) |
0.533 (0.729) |
0.967 (0.983) |
1 (1.00) |
0.811 (0.9) |
1 (1.00) |
5q gain | 20 (11%) | 164 |
0.443 (0.648) |
0.658 (0.807) |
0.493 (0.691) |
0.549 (0.739) |
0.779 (0.884) |
0.836 (0.914) |
0.928 (0.961) |
0.948 (0.972) |
0.7 (0.83) |
0.81 (0.9) |
6q gain | 33 (18%) | 151 |
0.129 (0.291) |
0.523 (0.72) |
0.0767 (0.215) |
0.113 (0.273) |
0.411 (0.62) |
0.153 (0.32) |
0.13 (0.293) |
0.166 (0.339) |
0.0573 (0.178) |
0.0663 (0.195) |
7p gain | 109 (59%) | 75 |
0.0699 (0.203) |
0.437 (0.641) |
0.305 (0.498) |
0.302 (0.497) |
0.237 (0.429) |
0.262 (0.449) |
0.7 (0.83) |
0.274 (0.464) |
0.437 (0.641) |
0.148 (0.315) |
8p gain | 67 (36%) | 117 |
0.626 (0.782) |
0.982 (0.995) |
0.889 (0.942) |
0.869 (0.929) |
0.718 (0.841) |
0.088 (0.23) |
0.0851 (0.227) |
0.777 (0.884) |
0.765 (0.878) |
0.739 (0.862) |
8q gain | 102 (55%) | 82 |
0.87 (0.929) |
0.854 (0.923) |
0.448 (0.648) |
0.177 (0.354) |
0.776 (0.884) |
0.373 (0.58) |
0.875 (0.93) |
0.607 (0.768) |
0.766 (0.878) |
1 (1.00) |
11q gain | 29 (16%) | 155 |
0.117 (0.277) |
0.374 (0.58) |
0.903 (0.95) |
0.951 (0.973) |
0.545 (0.736) |
0.218 (0.406) |
0.268 (0.457) |
0.338 (0.537) |
0.127 (0.289) |
0.188 (0.369) |
15q gain | 31 (17%) | 153 |
0.178 (0.354) |
0.523 (0.72) |
0.429 (0.636) |
0.237 (0.43) |
0.404 (0.613) |
0.0741 (0.21) |
0.399 (0.609) |
0.54 (0.731) |
0.313 (0.508) |
0.552 (0.74) |
17q gain | 44 (24%) | 140 |
0.405 (0.613) |
0.673 (0.814) |
0.997 (1.00) |
0.745 (0.864) |
0.322 (0.518) |
0.059 (0.181) |
0.422 (0.63) |
0.962 (0.981) |
0.809 (0.9) |
0.833 (0.913) |
19p gain | 28 (15%) | 156 |
0.509 (0.71) |
0.158 (0.329) |
0.536 (0.729) |
0.481 (0.678) |
0.396 (0.605) |
0.875 (0.93) |
0.429 (0.636) |
0.826 (0.909) |
0.653 (0.806) |
0.882 (0.936) |
19q gain | 40 (22%) | 144 |
0.362 (0.565) |
0.432 (0.638) |
0.515 (0.713) |
0.116 (0.277) |
0.452 (0.652) |
0.295 (0.489) |
0.0613 (0.185) |
0.588 (0.761) |
0.539 (0.731) |
0.211 (0.403) |
21q gain | 16 (9%) | 168 |
0.511 (0.71) |
0.0514 (0.165) |
0.664 (0.81) |
0.619 (0.776) |
0.153 (0.319) |
0.26 (0.448) |
0.0882 (0.23) |
0.445 (0.648) |
0.59 (0.761) |
0.617 (0.776) |
xp gain | 25 (14%) | 159 |
0.583 (0.76) |
0.26 (0.448) |
0.235 (0.428) |
0.115 (0.277) |
0.648 (0.804) |
0.704 (0.831) |
0.244 (0.434) |
0.122 (0.281) |
0.147 (0.315) |
0.221 (0.409) |
3q loss | 33 (18%) | 151 |
0.905 (0.951) |
0.912 (0.954) |
0.106 (0.261) |
0.661 (0.808) |
0.779 (0.884) |
0.597 (0.765) |
0.765 (0.878) |
0.912 (0.954) |
0.912 (0.954) |
0.899 (0.947) |
6p loss | 38 (21%) | 146 |
0.0839 (0.227) |
0.286 (0.479) |
0.571 (0.753) |
0.915 (0.956) |
0.0832 (0.226) |
0.566 (0.749) |
0.224 (0.413) |
0.288 (0.48) |
0.584 (0.76) |
0.386 (0.592) |
6q loss | 40 (22%) | 144 |
0.129 (0.291) |
0.282 (0.474) |
0.436 (0.641) |
0.604 (0.768) |
0.252 (0.444) |
0.812 (0.9) |
0.258 (0.448) |
0.616 (0.776) |
0.678 (0.814) |
0.425 (0.632) |
7p loss | 13 (7%) | 171 |
1 (1.00) |
0.827 (0.909) |
0.846 (0.92) |
0.116 (0.277) |
0.0565 (0.176) |
0.64 (0.797) |
0.47 (0.666) |
0.581 (0.76) |
0.54 (0.731) |
0.383 (0.591) |
8q loss | 21 (11%) | 163 |
0.12 (0.279) |
0.748 (0.865) |
0.898 (0.947) |
0.946 (0.971) |
0.132 (0.296) |
0.117 (0.277) |
0.674 (0.814) |
0.563 (0.748) |
0.675 (0.814) |
0.947 (0.971) |
11p loss | 52 (28%) | 132 |
0.139 (0.305) |
0.599 (0.765) |
0.94 (0.968) |
0.73 (0.852) |
0.447 (0.648) |
0.919 (0.957) |
0.799 (0.897) |
0.649 (0.804) |
0.939 (0.968) |
0.784 (0.884) |
17q loss | 26 (14%) | 158 |
0.299 (0.493) |
0.873 (0.929) |
0.993 (1.00) |
0.671 (0.814) |
0.241 (0.433) |
0.512 (0.71) |
0.857 (0.923) |
0.943 (0.97) |
0.652 (0.806) |
0.957 (0.978) |
20p loss | 19 (10%) | 165 |
1 (1.00) |
0.975 (0.99) |
0.495 (0.693) |
0.822 (0.906) |
0.623 (0.778) |
0.152 (0.318) |
0.861 (0.923) |
0.418 (0.627) |
0.898 (0.947) |
0.475 (0.67) |
20q loss | 6 (3%) | 178 |
0.561 (0.747) |
0.314 (0.509) |
0.282 (0.474) |
0.765 (0.878) |
0.471 (0.667) |
1 (1.00) |
0.679 (0.814) |
0.636 (0.792) |
0.375 (0.581) |
0.858 (0.923) |
P value = 0.0114 (Fisher's exact test), Q value = 0.061
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 74 | 33 | 77 |
1Q GAIN MUTATED | 25 | 5 | 34 |
1Q GAIN WILD-TYPE | 49 | 28 | 43 |
P value = 0.00336 (Fisher's exact test), Q value = 0.027
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 74 | 33 | 77 |
2P GAIN MUTATED | 23 | 4 | 34 |
2P GAIN WILD-TYPE | 51 | 29 | 43 |
P value = 0.00065 (Fisher's exact test), Q value = 0.0078
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 36 | 42 | 2 | 41 | 37 | 17 | 9 |
2P GAIN MUTATED | 13 | 10 | 2 | 23 | 9 | 1 | 3 |
2P GAIN WILD-TYPE | 23 | 32 | 0 | 18 | 28 | 16 | 6 |
P value = 0.0249 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 73 | 14 | 42 | 29 | 9 | 16 |
2P GAIN MUTATED | 20 | 5 | 13 | 14 | 0 | 9 |
2P GAIN WILD-TYPE | 53 | 9 | 29 | 15 | 9 | 7 |
P value = 0.0236 (Fisher's exact test), Q value = 0.1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 64 | 67 | 35 | 12 |
2P GAIN MUTATED | 19 | 31 | 7 | 2 |
2P GAIN WILD-TYPE | 45 | 36 | 28 | 10 |
P value = 0.00955 (Fisher's exact test), Q value = 0.054
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 74 | 33 | 77 |
2Q GAIN MUTATED | 21 | 2 | 24 |
2Q GAIN WILD-TYPE | 53 | 31 | 53 |
P value = 0.0306 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 36 | 42 | 2 | 41 | 37 | 17 | 9 |
2Q GAIN MUTATED | 12 | 9 | 1 | 16 | 5 | 1 | 3 |
2Q GAIN WILD-TYPE | 24 | 33 | 1 | 25 | 32 | 16 | 6 |
P value = 0.00491 (Fisher's exact test), Q value = 0.033
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 74 | 33 | 77 |
3P GAIN MUTATED | 16 | 0 | 15 |
3P GAIN WILD-TYPE | 58 | 33 | 62 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00059
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 74 | 33 | 77 |
3Q GAIN MUTATED | 31 | 0 | 46 |
3Q GAIN WILD-TYPE | 43 | 33 | 31 |
P value = 0.00528 (Fisher's exact test), Q value = 0.034
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 36 | 42 | 2 | 41 | 37 | 17 | 9 |
3Q GAIN MUTATED | 13 | 18 | 0 | 24 | 18 | 1 | 3 |
3Q GAIN WILD-TYPE | 23 | 24 | 2 | 17 | 19 | 16 | 6 |
P value = 0.00355 (Fisher's exact test), Q value = 0.028
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 26 | 28 | 30 | 34 | 8 |
4Q GAIN MUTATED | 1 | 6 | 7 | 0 | 0 |
4Q GAIN WILD-TYPE | 25 | 22 | 23 | 34 | 8 |
P value = 0.0047 (Fisher's exact test), Q value = 0.032
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 23 | 21 | 22 | 26 | 34 |
4Q GAIN MUTATED | 1 | 6 | 4 | 3 | 0 |
4Q GAIN WILD-TYPE | 22 | 15 | 18 | 23 | 34 |
P value = 4e-04 (Fisher's exact test), Q value = 0.0057
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 74 | 33 | 77 |
5P GAIN MUTATED | 26 | 6 | 43 |
5P GAIN WILD-TYPE | 48 | 27 | 34 |
P value = 0.00365 (Fisher's exact test), Q value = 0.028
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 36 | 42 | 2 | 41 | 37 | 17 | 9 |
5P GAIN MUTATED | 11 | 12 | 0 | 25 | 19 | 3 | 5 |
5P GAIN WILD-TYPE | 25 | 30 | 2 | 16 | 18 | 14 | 4 |
P value = 0.0359 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 73 | 14 | 42 | 29 | 9 | 16 |
5P GAIN MUTATED | 23 | 4 | 19 | 18 | 2 | 9 |
5P GAIN WILD-TYPE | 50 | 10 | 23 | 11 | 7 | 7 |
P value = 0.017 (Fisher's exact test), Q value = 0.082
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 67 | 20 | 96 |
5P GAIN MUTATED | 23 | 4 | 48 |
5P GAIN WILD-TYPE | 44 | 16 | 48 |
P value = 0.0399 (Fisher's exact test), Q value = 0.14
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 62 | 26 | 62 | 33 |
5P GAIN MUTATED | 18 | 9 | 33 | 15 |
5P GAIN WILD-TYPE | 44 | 17 | 29 | 18 |
P value = 0.00771 (Fisher's exact test), Q value = 0.045
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 55 | 29 | 94 |
5P GAIN MUTATED | 14 | 13 | 48 |
5P GAIN WILD-TYPE | 41 | 16 | 46 |
P value = 0.0293 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 70 | 15 | 10 | 18 | 28 | 42 |
6P GAIN MUTATED | 22 | 1 | 4 | 4 | 3 | 5 |
6P GAIN WILD-TYPE | 48 | 14 | 6 | 14 | 25 | 37 |
P value = 0.0226 (Fisher's exact test), Q value = 0.1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 62 | 26 | 62 | 33 |
6P GAIN MUTATED | 21 | 3 | 8 | 7 |
6P GAIN WILD-TYPE | 41 | 23 | 54 | 26 |
P value = 0.0185 (Fisher's exact test), Q value = 0.088
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 64 | 67 | 35 | 12 |
6P GAIN MUTATED | 22 | 10 | 4 | 3 |
6P GAIN WILD-TYPE | 42 | 57 | 31 | 9 |
P value = 0.0109 (Fisher's exact test), Q value = 0.059
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 55 | 29 | 94 |
6P GAIN MUTATED | 20 | 4 | 15 |
6P GAIN WILD-TYPE | 35 | 25 | 79 |
P value = 0.0351 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 74 | 33 | 77 |
7Q GAIN MUTATED | 37 | 9 | 41 |
7Q GAIN WILD-TYPE | 37 | 24 | 36 |
P value = 0.0407 (Fisher's exact test), Q value = 0.14
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 70 | 15 | 10 | 18 | 28 | 42 |
9P GAIN MUTATED | 4 | 5 | 0 | 2 | 1 | 4 |
9P GAIN WILD-TYPE | 66 | 10 | 10 | 16 | 27 | 38 |
P value = 0.0204 (Fisher's exact test), Q value = 0.093
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 62 | 26 | 62 | 33 |
9Q GAIN MUTATED | 6 | 7 | 17 | 3 |
9Q GAIN WILD-TYPE | 56 | 19 | 45 | 30 |
P value = 0.00584 (Fisher's exact test), Q value = 0.036
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 74 | 33 | 77 |
10P GAIN MUTATED | 25 | 5 | 10 |
10P GAIN WILD-TYPE | 49 | 28 | 67 |
P value = 0.0388 (Fisher's exact test), Q value = 0.14
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 70 | 15 | 10 | 18 | 28 | 42 |
10P GAIN MUTATED | 22 | 2 | 3 | 3 | 1 | 9 |
10P GAIN WILD-TYPE | 48 | 13 | 7 | 15 | 27 | 33 |
P value = 0.00372 (Fisher's exact test), Q value = 0.028
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 74 | 33 | 77 |
10Q GAIN MUTATED | 21 | 3 | 7 |
10Q GAIN WILD-TYPE | 53 | 30 | 70 |
P value = 0.0141 (Fisher's exact test), Q value = 0.072
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 36 | 42 | 2 | 41 | 37 | 17 | 9 |
10Q GAIN MUTATED | 12 | 8 | 1 | 3 | 6 | 0 | 1 |
10Q GAIN WILD-TYPE | 24 | 34 | 1 | 38 | 31 | 17 | 8 |
P value = 0.0321 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 55 | 29 | 94 |
10Q GAIN MUTATED | 15 | 5 | 10 |
10Q GAIN WILD-TYPE | 40 | 24 | 84 |
P value = 0.0451 (Fisher's exact test), Q value = 0.15
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 74 | 33 | 77 |
11P GAIN MUTATED | 17 | 2 | 20 |
11P GAIN WILD-TYPE | 57 | 31 | 57 |
P value = 0.00041 (Fisher's exact test), Q value = 0.0057
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 74 | 33 | 77 |
12P GAIN MUTATED | 16 | 5 | 36 |
12P GAIN WILD-TYPE | 58 | 28 | 41 |
P value = 0.00233 (Fisher's exact test), Q value = 0.021
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 36 | 42 | 2 | 41 | 37 | 17 | 9 |
12P GAIN MUTATED | 7 | 9 | 0 | 23 | 9 | 4 | 5 |
12P GAIN WILD-TYPE | 29 | 33 | 2 | 18 | 28 | 13 | 4 |
P value = 0.00341 (Fisher's exact test), Q value = 0.027
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 73 | 14 | 42 | 29 | 9 | 16 |
12P GAIN MUTATED | 13 | 7 | 12 | 15 | 2 | 8 |
12P GAIN WILD-TYPE | 60 | 7 | 30 | 14 | 7 | 8 |
P value = 0.00541 (Fisher's exact test), Q value = 0.035
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 67 | 20 | 96 |
12P GAIN MUTATED | 14 | 3 | 40 |
12P GAIN WILD-TYPE | 53 | 17 | 56 |
P value = 0.0025 (Fisher's exact test), Q value = 0.022
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 62 | 26 | 62 | 33 |
12P GAIN MUTATED | 12 | 5 | 30 | 9 |
12P GAIN WILD-TYPE | 50 | 21 | 32 | 24 |
P value = 0.00876 (Fisher's exact test), Q value = 0.05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 64 | 67 | 35 | 12 |
12P GAIN MUTATED | 14 | 31 | 8 | 2 |
12P GAIN WILD-TYPE | 50 | 36 | 27 | 10 |
P value = 0.0124 (Fisher's exact test), Q value = 0.066
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 55 | 29 | 94 |
12P GAIN MUTATED | 10 | 7 | 38 |
12P GAIN WILD-TYPE | 45 | 22 | 56 |
P value = 0.0297 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 74 | 33 | 77 |
12Q GAIN MUTATED | 14 | 2 | 21 |
12Q GAIN WILD-TYPE | 60 | 31 | 56 |
P value = 0.00011 (Fisher's exact test), Q value = 0.002
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 74 | 33 | 77 |
13Q GAIN MUTATED | 30 | 5 | 9 |
13Q GAIN WILD-TYPE | 44 | 28 | 68 |
P value = 0.00117 (Fisher's exact test), Q value = 0.012
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 36 | 42 | 2 | 41 | 37 | 17 | 9 |
13Q GAIN MUTATED | 14 | 17 | 0 | 7 | 2 | 2 | 2 |
13Q GAIN WILD-TYPE | 22 | 25 | 2 | 34 | 35 | 15 | 7 |
P value = 1e-04 (Fisher's exact test), Q value = 0.0019
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 73 | 14 | 42 | 29 | 9 | 16 |
13Q GAIN MUTATED | 31 | 0 | 4 | 5 | 2 | 2 |
13Q GAIN WILD-TYPE | 42 | 14 | 38 | 24 | 7 | 14 |
P value = 2e-05 (Fisher's exact test), Q value = 0.00075
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 67 | 20 | 96 |
13Q GAIN MUTATED | 24 | 11 | 9 |
13Q GAIN WILD-TYPE | 43 | 9 | 87 |
P value = 3e-05 (Fisher's exact test), Q value = 0.00082
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 70 | 15 | 10 | 18 | 28 | 42 |
13Q GAIN MUTATED | 31 | 4 | 1 | 3 | 2 | 3 |
13Q GAIN WILD-TYPE | 39 | 11 | 9 | 15 | 26 | 39 |
P value = 5e-05 (Fisher's exact test), Q value = 0.0012
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 62 | 26 | 62 | 33 |
13Q GAIN MUTATED | 25 | 10 | 5 | 4 |
13Q GAIN WILD-TYPE | 37 | 16 | 57 | 29 |
P value = 5e-05 (Fisher's exact test), Q value = 0.0012
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 64 | 67 | 35 | 12 |
13Q GAIN MUTATED | 28 | 8 | 4 | 4 |
13Q GAIN WILD-TYPE | 36 | 59 | 31 | 8 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00059
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 55 | 29 | 94 |
13Q GAIN MUTATED | 23 | 12 | 9 |
13Q GAIN WILD-TYPE | 32 | 17 | 85 |
P value = 0.0247 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 74 | 33 | 77 |
14Q GAIN MUTATED | 12 | 10 | 27 |
14Q GAIN WILD-TYPE | 62 | 23 | 50 |
P value = 0.0144 (Fisher's exact test), Q value = 0.074
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 26 | 28 | 30 | 34 | 8 |
14Q GAIN MUTATED | 4 | 5 | 9 | 17 | 4 |
14Q GAIN WILD-TYPE | 22 | 23 | 21 | 17 | 4 |
P value = 0.0157 (Fisher's exact test), Q value = 0.078
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 67 | 20 | 96 |
14Q GAIN MUTATED | 13 | 2 | 34 |
14Q GAIN WILD-TYPE | 54 | 18 | 62 |
P value = 0.034 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 62 | 26 | 62 | 33 |
14Q GAIN MUTATED | 11 | 4 | 24 | 9 |
14Q GAIN WILD-TYPE | 51 | 22 | 38 | 24 |
P value = 0.0162 (Fisher's exact test), Q value = 0.08
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 64 | 67 | 35 | 12 |
14Q GAIN MUTATED | 11 | 22 | 8 | 7 |
14Q GAIN WILD-TYPE | 53 | 45 | 27 | 5 |
P value = 0.0417 (Fisher's exact test), Q value = 0.14
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 55 | 29 | 94 |
14Q GAIN MUTATED | 10 | 5 | 33 |
14Q GAIN WILD-TYPE | 45 | 24 | 61 |
P value = 0.0135 (Fisher's exact test), Q value = 0.07
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 74 | 33 | 77 |
16P GAIN MUTATED | 11 | 4 | 25 |
16P GAIN WILD-TYPE | 63 | 29 | 52 |
P value = 0.0369 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 36 | 42 | 2 | 41 | 37 | 17 | 9 |
16P GAIN MUTATED | 7 | 4 | 1 | 14 | 11 | 3 | 0 |
16P GAIN WILD-TYPE | 29 | 38 | 1 | 27 | 26 | 14 | 9 |
P value = 0.00502 (Fisher's exact test), Q value = 0.033
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 67 | 20 | 96 |
16P GAIN MUTATED | 12 | 0 | 28 |
16P GAIN WILD-TYPE | 55 | 20 | 68 |
P value = 0.0373 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 62 | 26 | 62 | 33 |
16P GAIN MUTATED | 8 | 4 | 21 | 7 |
16P GAIN WILD-TYPE | 54 | 22 | 41 | 26 |
P value = 0.0488 (Fisher's exact test), Q value = 0.16
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 64 | 67 | 35 | 12 |
16P GAIN MUTATED | 7 | 20 | 8 | 3 |
16P GAIN WILD-TYPE | 57 | 47 | 27 | 9 |
P value = 0.00422 (Fisher's exact test), Q value = 0.03
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 74 | 33 | 77 |
16Q GAIN MUTATED | 9 | 4 | 25 |
16Q GAIN WILD-TYPE | 65 | 29 | 52 |
P value = 0.0481 (Fisher's exact test), Q value = 0.16
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 36 | 42 | 2 | 41 | 37 | 17 | 9 |
16Q GAIN MUTATED | 6 | 4 | 1 | 12 | 12 | 3 | 0 |
16Q GAIN WILD-TYPE | 30 | 38 | 1 | 29 | 25 | 14 | 9 |
P value = 0.0245 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 23 | 21 | 22 | 26 | 34 |
16Q GAIN MUTATED | 0 | 3 | 7 | 7 | 8 |
16Q GAIN WILD-TYPE | 23 | 18 | 15 | 19 | 26 |
P value = 0.0435 (Fisher's exact test), Q value = 0.15
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 67 | 20 | 96 |
16Q GAIN MUTATED | 9 | 2 | 27 |
16Q GAIN WILD-TYPE | 58 | 18 | 69 |
P value = 0.0291 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 62 | 26 | 62 | 33 |
16Q GAIN MUTATED | 6 | 5 | 19 | 8 |
16Q GAIN WILD-TYPE | 56 | 21 | 43 | 25 |
P value = 0.0222 (Fisher's exact test), Q value = 0.1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 64 | 67 | 35 | 12 |
16Q GAIN MUTATED | 6 | 19 | 7 | 4 |
16Q GAIN WILD-TYPE | 58 | 48 | 28 | 8 |
P value = 0.0158 (Fisher's exact test), Q value = 0.079
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 74 | 33 | 77 |
17P GAIN MUTATED | 12 | 1 | 19 |
17P GAIN WILD-TYPE | 62 | 32 | 58 |
P value = 0.025 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 70 | 15 | 10 | 18 | 28 | 42 |
18P GAIN MUTATED | 14 | 6 | 7 | 4 | 9 | 9 |
18P GAIN WILD-TYPE | 56 | 9 | 3 | 14 | 19 | 33 |
P value = 0.0113 (Fisher's exact test), Q value = 0.061
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 70 | 15 | 10 | 18 | 28 | 42 |
18Q GAIN MUTATED | 7 | 3 | 5 | 2 | 5 | 2 |
18Q GAIN WILD-TYPE | 63 | 12 | 5 | 16 | 23 | 40 |
P value = 7e-04 (Fisher's exact test), Q value = 0.0083
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 74 | 33 | 77 |
20P GAIN MUTATED | 52 | 10 | 45 |
20P GAIN WILD-TYPE | 22 | 23 | 32 |
P value = 3e-05 (Fisher's exact test), Q value = 0.00082
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 74 | 33 | 77 |
20Q GAIN MUTATED | 60 | 12 | 42 |
20Q GAIN WILD-TYPE | 14 | 21 | 35 |
P value = 0.00194 (Fisher's exact test), Q value = 0.018
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 36 | 42 | 2 | 41 | 37 | 17 | 9 |
20Q GAIN MUTATED | 30 | 30 | 0 | 22 | 16 | 9 | 7 |
20Q GAIN WILD-TYPE | 6 | 12 | 2 | 19 | 21 | 8 | 2 |
P value = 0.00253 (Fisher's exact test), Q value = 0.022
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 73 | 14 | 42 | 29 | 9 | 16 |
20Q GAIN MUTATED | 56 | 11 | 19 | 15 | 3 | 10 |
20Q GAIN WILD-TYPE | 17 | 3 | 23 | 14 | 6 | 6 |
P value = 0.00399 (Fisher's exact test), Q value = 0.029
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 67 | 20 | 96 |
20Q GAIN MUTATED | 51 | 14 | 49 |
20Q GAIN WILD-TYPE | 16 | 6 | 47 |
P value = 0.00113 (Fisher's exact test), Q value = 0.012
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 70 | 15 | 10 | 18 | 28 | 42 |
20Q GAIN MUTATED | 52 | 11 | 9 | 10 | 15 | 16 |
20Q GAIN WILD-TYPE | 18 | 4 | 1 | 8 | 13 | 26 |
P value = 0.00245 (Fisher's exact test), Q value = 0.022
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 62 | 26 | 62 | 33 |
20Q GAIN MUTATED | 48 | 18 | 33 | 14 |
20Q GAIN WILD-TYPE | 14 | 8 | 29 | 19 |
P value = 0.0227 (Fisher's exact test), Q value = 0.1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 64 | 67 | 35 | 12 |
20Q GAIN MUTATED | 48 | 33 | 23 | 8 |
20Q GAIN WILD-TYPE | 16 | 34 | 12 | 4 |
P value = 2e-04 (Fisher's exact test), Q value = 0.0032
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 55 | 29 | 94 |
20Q GAIN MUTATED | 45 | 21 | 46 |
20Q GAIN WILD-TYPE | 10 | 8 | 48 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00059
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 74 | 33 | 77 |
22Q GAIN MUTATED | 2 | 2 | 27 |
22Q GAIN WILD-TYPE | 72 | 31 | 50 |
P value = 3e-05 (Fisher's exact test), Q value = 0.00082
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 36 | 42 | 2 | 41 | 37 | 17 | 9 |
22Q GAIN MUTATED | 1 | 2 | 0 | 17 | 9 | 1 | 1 |
22Q GAIN WILD-TYPE | 35 | 40 | 2 | 24 | 28 | 16 | 8 |
P value = 0.00411 (Fisher's exact test), Q value = 0.03
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 26 | 28 | 30 | 34 | 8 |
22Q GAIN MUTATED | 1 | 3 | 6 | 14 | 1 |
22Q GAIN WILD-TYPE | 25 | 25 | 24 | 20 | 7 |
P value = 0.00054 (Fisher's exact test), Q value = 0.0069
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 23 | 21 | 22 | 26 | 34 |
22Q GAIN MUTATED | 1 | 0 | 3 | 9 | 12 |
22Q GAIN WILD-TYPE | 22 | 21 | 19 | 17 | 22 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00059
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 73 | 14 | 42 | 29 | 9 | 16 |
22Q GAIN MUTATED | 1 | 2 | 12 | 11 | 2 | 3 |
22Q GAIN WILD-TYPE | 72 | 12 | 30 | 18 | 7 | 13 |
P value = 3e-05 (Fisher's exact test), Q value = 0.00082
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 67 | 20 | 96 |
22Q GAIN MUTATED | 3 | 0 | 28 |
22Q GAIN WILD-TYPE | 64 | 20 | 68 |
P value = 2e-04 (Fisher's exact test), Q value = 0.0032
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 70 | 15 | 10 | 18 | 28 | 42 |
22Q GAIN MUTATED | 3 | 3 | 1 | 6 | 3 | 15 |
22Q GAIN WILD-TYPE | 67 | 12 | 9 | 12 | 25 | 27 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00059
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 62 | 26 | 62 | 33 |
22Q GAIN MUTATED | 2 | 1 | 22 | 6 |
22Q GAIN WILD-TYPE | 60 | 25 | 40 | 27 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00059
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 64 | 67 | 35 | 12 |
22Q GAIN MUTATED | 2 | 25 | 3 | 1 |
22Q GAIN WILD-TYPE | 62 | 42 | 32 | 11 |
P value = 3e-05 (Fisher's exact test), Q value = 0.00082
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 55 | 29 | 94 |
22Q GAIN MUTATED | 2 | 1 | 28 |
22Q GAIN WILD-TYPE | 53 | 28 | 66 |
P value = 0.0358 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 26 | 28 | 30 | 34 | 8 |
XQ GAIN MUTATED | 1 | 10 | 6 | 10 | 2 |
XQ GAIN WILD-TYPE | 25 | 18 | 24 | 24 | 6 |
P value = 0.0273 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 73 | 14 | 42 | 29 | 9 | 16 |
XQ GAIN MUTATED | 11 | 3 | 14 | 11 | 0 | 2 |
XQ GAIN WILD-TYPE | 62 | 11 | 28 | 18 | 9 | 14 |
P value = 0.0264 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 67 | 20 | 96 |
XQ GAIN MUTATED | 8 | 5 | 28 |
XQ GAIN WILD-TYPE | 59 | 15 | 68 |
P value = 0.0311 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 62 | 26 | 62 | 33 |
XQ GAIN MUTATED | 12 | 1 | 19 | 8 |
XQ GAIN WILD-TYPE | 50 | 25 | 43 | 25 |
P value = 0.0473 (Fisher's exact test), Q value = 0.16
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 64 | 67 | 35 | 12 |
XQ GAIN MUTATED | 12 | 21 | 3 | 3 |
XQ GAIN WILD-TYPE | 52 | 46 | 32 | 9 |
P value = 0.00088 (Fisher's exact test), Q value = 0.0096
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 74 | 33 | 77 |
1P LOSS MUTATED | 24 | 1 | 13 |
1P LOSS WILD-TYPE | 50 | 32 | 64 |
P value = 2e-05 (Fisher's exact test), Q value = 0.00075
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 36 | 42 | 2 | 41 | 37 | 17 | 9 |
1P LOSS MUTATED | 8 | 16 | 0 | 13 | 0 | 0 | 1 |
1P LOSS WILD-TYPE | 28 | 26 | 2 | 28 | 37 | 17 | 8 |
P value = 0.00093 (Fisher's exact test), Q value = 0.0099
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 73 | 14 | 42 | 29 | 9 | 16 |
1P LOSS MUTATED | 23 | 1 | 2 | 10 | 0 | 2 |
1P LOSS WILD-TYPE | 50 | 13 | 40 | 19 | 9 | 14 |
P value = 0.0375 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 67 | 20 | 96 |
1P LOSS MUTATED | 20 | 5 | 13 |
1P LOSS WILD-TYPE | 47 | 15 | 83 |
P value = 0.031 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 62 | 26 | 62 | 33 |
1P LOSS MUTATED | 19 | 6 | 11 | 2 |
1P LOSS WILD-TYPE | 43 | 20 | 51 | 31 |
P value = 0.0166 (Fisher's exact test), Q value = 0.081
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 64 | 67 | 35 | 12 |
1P LOSS MUTATED | 21 | 11 | 5 | 0 |
1P LOSS WILD-TYPE | 43 | 56 | 30 | 12 |
P value = 0.026 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 55 | 29 | 94 |
1P LOSS MUTATED | 18 | 6 | 13 |
1P LOSS WILD-TYPE | 37 | 23 | 81 |
P value = 0.0494 (Fisher's exact test), Q value = 0.16
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 74 | 33 | 77 |
1Q LOSS MUTATED | 14 | 1 | 7 |
1Q LOSS WILD-TYPE | 60 | 32 | 70 |
P value = 0.0294 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 70 | 15 | 10 | 18 | 28 | 42 |
1Q LOSS MUTATED | 12 | 5 | 1 | 1 | 1 | 2 |
1Q LOSS WILD-TYPE | 58 | 10 | 9 | 17 | 27 | 40 |
P value = 0.0105 (Fisher's exact test), Q value = 0.058
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 73 | 14 | 42 | 29 | 9 | 16 |
2P LOSS MUTATED | 1 | 3 | 3 | 0 | 1 | 2 |
2P LOSS WILD-TYPE | 72 | 11 | 39 | 29 | 8 | 14 |
P value = 8e-04 (Fisher's exact test), Q value = 0.0091
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 62 | 26 | 62 | 33 |
2P LOSS MUTATED | 2 | 0 | 1 | 7 |
2P LOSS WILD-TYPE | 60 | 26 | 61 | 26 |
P value = 0.0131 (Fisher's exact test), Q value = 0.069
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 73 | 14 | 42 | 29 | 9 | 16 |
2Q LOSS MUTATED | 3 | 5 | 4 | 2 | 1 | 3 |
2Q LOSS WILD-TYPE | 70 | 9 | 38 | 27 | 8 | 13 |
P value = 0.0325 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 67 | 20 | 96 |
2Q LOSS MUTATED | 2 | 2 | 14 |
2Q LOSS WILD-TYPE | 65 | 18 | 82 |
P value = 0.0072 (Fisher's exact test), Q value = 0.043
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 62 | 26 | 62 | 33 |
2Q LOSS MUTATED | 3 | 1 | 5 | 9 |
2Q LOSS WILD-TYPE | 59 | 25 | 57 | 24 |
P value = 3e-05 (Fisher's exact test), Q value = 0.00082
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 74 | 33 | 77 |
3P LOSS MUTATED | 27 | 11 | 54 |
3P LOSS WILD-TYPE | 47 | 22 | 23 |
P value = 0.00016 (Fisher's exact test), Q value = 0.0026
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 36 | 42 | 2 | 41 | 37 | 17 | 9 |
3P LOSS MUTATED | 11 | 14 | 0 | 30 | 25 | 7 | 5 |
3P LOSS WILD-TYPE | 25 | 28 | 2 | 11 | 12 | 10 | 4 |
P value = 0.00058 (Fisher's exact test), Q value = 0.0071
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 73 | 14 | 42 | 29 | 9 | 16 |
3P LOSS MUTATED | 25 | 8 | 27 | 22 | 4 | 5 |
3P LOSS WILD-TYPE | 48 | 6 | 15 | 7 | 5 | 11 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00059
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 67 | 20 | 96 |
3P LOSS MUTATED | 17 | 9 | 65 |
3P LOSS WILD-TYPE | 50 | 11 | 31 |
P value = 0.00136 (Fisher's exact test), Q value = 0.013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 70 | 15 | 10 | 18 | 28 | 42 |
3P LOSS MUTATED | 25 | 6 | 3 | 11 | 16 | 31 |
3P LOSS WILD-TYPE | 45 | 9 | 7 | 7 | 12 | 11 |
P value = 3e-05 (Fisher's exact test), Q value = 0.00082
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 62 | 26 | 62 | 33 |
3P LOSS MUTATED | 20 | 7 | 42 | 23 |
3P LOSS WILD-TYPE | 42 | 19 | 20 | 10 |
P value = 0.00107 (Fisher's exact test), Q value = 0.011
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 64 | 67 | 35 | 12 |
3P LOSS MUTATED | 21 | 45 | 17 | 7 |
3P LOSS WILD-TYPE | 43 | 22 | 18 | 5 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00059
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 55 | 29 | 94 |
3P LOSS MUTATED | 17 | 9 | 64 |
3P LOSS WILD-TYPE | 38 | 20 | 30 |
P value = 0.00085 (Fisher's exact test), Q value = 0.0094
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 74 | 33 | 77 |
4P LOSS MUTATED | 47 | 9 | 49 |
4P LOSS WILD-TYPE | 27 | 24 | 28 |
P value = 0.00416 (Fisher's exact test), Q value = 0.03
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 36 | 42 | 2 | 41 | 37 | 17 | 9 |
4P LOSS MUTATED | 20 | 25 | 0 | 31 | 22 | 5 | 2 |
4P LOSS WILD-TYPE | 16 | 17 | 2 | 10 | 15 | 12 | 7 |
P value = 0.0333 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 73 | 14 | 42 | 29 | 9 | 16 |
4P LOSS MUTATED | 41 | 7 | 25 | 23 | 2 | 7 |
4P LOSS WILD-TYPE | 32 | 7 | 17 | 6 | 7 | 9 |
P value = 0.0194 (Fisher's exact test), Q value = 0.09
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 64 | 67 | 35 | 12 |
4P LOSS MUTATED | 34 | 44 | 14 | 10 |
4P LOSS WILD-TYPE | 30 | 23 | 21 | 2 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00059
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 74 | 33 | 77 |
4Q LOSS MUTATED | 47 | 4 | 37 |
4Q LOSS WILD-TYPE | 27 | 29 | 40 |
P value = 0.00903 (Fisher's exact test), Q value = 0.051
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 36 | 42 | 2 | 41 | 37 | 17 | 9 |
4Q LOSS MUTATED | 20 | 24 | 0 | 23 | 17 | 3 | 1 |
4Q LOSS WILD-TYPE | 16 | 18 | 2 | 18 | 20 | 14 | 8 |
P value = 0.0048 (Fisher's exact test), Q value = 0.032
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 74 | 33 | 77 |
5P LOSS MUTATED | 28 | 6 | 12 |
5P LOSS WILD-TYPE | 46 | 27 | 65 |
P value = 0.00083 (Fisher's exact test), Q value = 0.0093
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 36 | 42 | 2 | 41 | 37 | 17 | 9 |
5P LOSS MUTATED | 16 | 17 | 0 | 7 | 4 | 1 | 1 |
5P LOSS WILD-TYPE | 20 | 25 | 2 | 34 | 33 | 16 | 8 |
P value = 4e-05 (Fisher's exact test), Q value = 0.0011
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 73 | 14 | 42 | 29 | 9 | 16 |
5P LOSS MUTATED | 28 | 8 | 3 | 5 | 1 | 1 |
5P LOSS WILD-TYPE | 45 | 6 | 39 | 24 | 8 | 15 |
P value = 1e-04 (Fisher's exact test), Q value = 0.0019
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 67 | 20 | 96 |
5P LOSS MUTATED | 22 | 11 | 13 |
5P LOSS WILD-TYPE | 45 | 9 | 83 |
P value = 2e-05 (Fisher's exact test), Q value = 0.00075
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 70 | 15 | 10 | 18 | 28 | 42 |
5P LOSS MUTATED | 30 | 1 | 4 | 5 | 2 | 3 |
5P LOSS WILD-TYPE | 40 | 14 | 6 | 13 | 26 | 39 |
P value = 3e-05 (Fisher's exact test), Q value = 0.00082
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 62 | 26 | 62 | 33 |
5P LOSS MUTATED | 29 | 5 | 7 | 4 |
5P LOSS WILD-TYPE | 33 | 21 | 55 | 29 |
P value = 8e-05 (Fisher's exact test), Q value = 0.0017
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 64 | 67 | 35 | 12 |
5P LOSS MUTATED | 28 | 12 | 2 | 1 |
5P LOSS WILD-TYPE | 36 | 55 | 33 | 11 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00059
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 55 | 29 | 94 |
5P LOSS MUTATED | 27 | 5 | 11 |
5P LOSS WILD-TYPE | 28 | 24 | 83 |
P value = 0.00186 (Fisher's exact test), Q value = 0.017
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 74 | 33 | 77 |
5Q LOSS MUTATED | 45 | 8 | 34 |
5Q LOSS WILD-TYPE | 29 | 25 | 43 |
P value = 0.00022 (Fisher's exact test), Q value = 0.0034
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 36 | 42 | 2 | 41 | 37 | 17 | 9 |
5Q LOSS MUTATED | 23 | 23 | 0 | 26 | 9 | 4 | 2 |
5Q LOSS WILD-TYPE | 13 | 19 | 2 | 15 | 28 | 13 | 7 |
P value = 0.00482 (Fisher's exact test), Q value = 0.032
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 73 | 14 | 42 | 29 | 9 | 16 |
5Q LOSS MUTATED | 41 | 9 | 9 | 16 | 4 | 8 |
5Q LOSS WILD-TYPE | 32 | 5 | 33 | 13 | 5 | 8 |
P value = 0.0341 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 73 | 14 | 42 | 29 | 9 | 16 |
7Q LOSS MUTATED | 10 | 4 | 8 | 0 | 0 | 1 |
7Q LOSS WILD-TYPE | 63 | 10 | 34 | 29 | 9 | 15 |
P value = 0.0239 (Fisher's exact test), Q value = 0.1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 74 | 33 | 77 |
8P LOSS MUTATED | 25 | 5 | 32 |
8P LOSS WILD-TYPE | 49 | 28 | 45 |
P value = 0.0217 (Fisher's exact test), Q value = 0.098
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 74 | 33 | 77 |
9P LOSS MUTATED | 46 | 11 | 43 |
9P LOSS WILD-TYPE | 28 | 22 | 34 |
P value = 0.0204 (Fisher's exact test), Q value = 0.093
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 73 | 14 | 42 | 29 | 9 | 16 |
9P LOSS MUTATED | 43 | 12 | 24 | 10 | 4 | 6 |
9P LOSS WILD-TYPE | 30 | 2 | 18 | 19 | 5 | 10 |
P value = 0.017 (Fisher's exact test), Q value = 0.082
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 74 | 33 | 77 |
9Q LOSS MUTATED | 27 | 5 | 33 |
9Q LOSS WILD-TYPE | 47 | 28 | 44 |
P value = 0.0249 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 36 | 42 | 2 | 41 | 37 | 17 | 9 |
9Q LOSS MUTATED | 18 | 7 | 0 | 16 | 17 | 5 | 2 |
9Q LOSS WILD-TYPE | 18 | 35 | 2 | 25 | 20 | 12 | 7 |
P value = 0.0298 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 73 | 14 | 42 | 29 | 9 | 16 |
9Q LOSS MUTATED | 22 | 11 | 15 | 10 | 2 | 5 |
9Q LOSS WILD-TYPE | 51 | 3 | 27 | 19 | 7 | 11 |
P value = 0.00147 (Fisher's exact test), Q value = 0.014
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 74 | 33 | 77 |
10P LOSS MUTATED | 15 | 4 | 32 |
10P LOSS WILD-TYPE | 59 | 29 | 45 |
P value = 0.00373 (Fisher's exact test), Q value = 0.028
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 36 | 42 | 2 | 41 | 37 | 17 | 9 |
10P LOSS MUTATED | 3 | 9 | 0 | 20 | 12 | 4 | 3 |
10P LOSS WILD-TYPE | 33 | 33 | 2 | 21 | 25 | 13 | 6 |
P value = 0.00725 (Fisher's exact test), Q value = 0.043
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 73 | 14 | 42 | 29 | 9 | 16 |
10P LOSS MUTATED | 12 | 2 | 15 | 15 | 2 | 5 |
10P LOSS WILD-TYPE | 61 | 12 | 27 | 14 | 7 | 11 |
P value = 0.00977 (Fisher's exact test), Q value = 0.055
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 67 | 20 | 96 |
10P LOSS MUTATED | 12 | 3 | 36 |
10P LOSS WILD-TYPE | 55 | 17 | 60 |
P value = 0.024 (Fisher's exact test), Q value = 0.1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 70 | 15 | 10 | 18 | 28 | 42 |
10P LOSS MUTATED | 11 | 8 | 2 | 5 | 10 | 15 |
10P LOSS WILD-TYPE | 59 | 7 | 8 | 13 | 18 | 27 |
P value = 0.00572 (Fisher's exact test), Q value = 0.036
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 62 | 26 | 62 | 33 |
10P LOSS MUTATED | 8 | 7 | 24 | 12 |
10P LOSS WILD-TYPE | 54 | 19 | 38 | 21 |
P value = 0.0151 (Fisher's exact test), Q value = 0.076
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 64 | 67 | 35 | 12 |
10P LOSS MUTATED | 10 | 27 | 10 | 4 |
10P LOSS WILD-TYPE | 54 | 40 | 25 | 8 |
P value = 0.00258 (Fisher's exact test), Q value = 0.022
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 55 | 29 | 94 |
10P LOSS MUTATED | 7 | 8 | 36 |
10P LOSS WILD-TYPE | 48 | 21 | 58 |
P value = 7e-05 (Fisher's exact test), Q value = 0.0015
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 74 | 33 | 77 |
10Q LOSS MUTATED | 12 | 4 | 34 |
10Q LOSS WILD-TYPE | 62 | 29 | 43 |
P value = 6e-05 (Fisher's exact test), Q value = 0.0013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 36 | 42 | 2 | 41 | 37 | 17 | 9 |
10Q LOSS MUTATED | 3 | 7 | 0 | 23 | 9 | 5 | 3 |
10Q LOSS WILD-TYPE | 33 | 35 | 2 | 18 | 28 | 12 | 6 |
P value = 0.0053 (Fisher's exact test), Q value = 0.034
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 73 | 14 | 42 | 29 | 9 | 16 |
10Q LOSS MUTATED | 11 | 3 | 13 | 15 | 4 | 4 |
10Q LOSS WILD-TYPE | 62 | 11 | 29 | 14 | 5 | 12 |
P value = 0.00131 (Fisher's exact test), Q value = 0.013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 67 | 20 | 96 |
10Q LOSS MUTATED | 11 | 2 | 37 |
10Q LOSS WILD-TYPE | 56 | 18 | 59 |
P value = 0.0242 (Fisher's exact test), Q value = 0.1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 70 | 15 | 10 | 18 | 28 | 42 |
10Q LOSS MUTATED | 10 | 6 | 2 | 5 | 11 | 16 |
10Q LOSS WILD-TYPE | 60 | 9 | 8 | 13 | 17 | 26 |
P value = 0.00184 (Fisher's exact test), Q value = 0.017
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 62 | 26 | 62 | 33 |
10Q LOSS MUTATED | 8 | 5 | 26 | 11 |
10Q LOSS WILD-TYPE | 54 | 21 | 36 | 22 |
P value = 0.00651 (Fisher's exact test), Q value = 0.04
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 64 | 67 | 35 | 12 |
10Q LOSS MUTATED | 9 | 27 | 10 | 4 |
10Q LOSS WILD-TYPE | 55 | 40 | 25 | 8 |
P value = 0.00108 (Fisher's exact test), Q value = 0.011
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 55 | 29 | 94 |
10Q LOSS MUTATED | 7 | 6 | 37 |
10Q LOSS WILD-TYPE | 48 | 23 | 57 |
P value = 0.00053 (Fisher's exact test), Q value = 0.0069
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 74 | 33 | 77 |
11Q LOSS MUTATED | 18 | 5 | 37 |
11Q LOSS WILD-TYPE | 56 | 28 | 40 |
P value = 0.0222 (Fisher's exact test), Q value = 0.1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 36 | 42 | 2 | 41 | 37 | 17 | 9 |
11Q LOSS MUTATED | 11 | 8 | 0 | 17 | 18 | 2 | 4 |
11Q LOSS WILD-TYPE | 25 | 34 | 2 | 24 | 19 | 15 | 5 |
P value = 0.00584 (Fisher's exact test), Q value = 0.036
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 73 | 14 | 42 | 29 | 9 | 16 |
11Q LOSS MUTATED | 16 | 10 | 14 | 11 | 1 | 7 |
11Q LOSS WILD-TYPE | 57 | 4 | 28 | 18 | 8 | 9 |
P value = 0.0285 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 67 | 20 | 96 |
11Q LOSS MUTATED | 14 | 6 | 39 |
11Q LOSS WILD-TYPE | 53 | 14 | 57 |
P value = 0.0229 (Fisher's exact test), Q value = 0.1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 74 | 33 | 77 |
12P LOSS MUTATED | 21 | 4 | 9 |
12P LOSS WILD-TYPE | 53 | 29 | 68 |
P value = 0.0297 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 36 | 42 | 2 | 41 | 37 | 17 | 9 |
12P LOSS MUTATED | 14 | 9 | 0 | 4 | 5 | 1 | 1 |
12P LOSS WILD-TYPE | 22 | 33 | 2 | 37 | 32 | 16 | 8 |
P value = 0.0323 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 23 | 21 | 22 | 26 | 34 |
12P LOSS MUTATED | 10 | 3 | 5 | 4 | 3 |
12P LOSS WILD-TYPE | 13 | 18 | 17 | 22 | 31 |
P value = 0.00993 (Fisher's exact test), Q value = 0.055
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 73 | 14 | 42 | 29 | 9 | 16 |
12P LOSS MUTATED | 22 | 4 | 3 | 4 | 0 | 1 |
12P LOSS WILD-TYPE | 51 | 10 | 39 | 25 | 9 | 15 |
P value = 0.00167 (Fisher's exact test), Q value = 0.016
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 67 | 20 | 96 |
12P LOSS MUTATED | 18 | 7 | 9 |
12P LOSS WILD-TYPE | 49 | 13 | 87 |
P value = 0.0265 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 70 | 15 | 10 | 18 | 28 | 42 |
12P LOSS MUTATED | 21 | 2 | 3 | 2 | 3 | 3 |
12P LOSS WILD-TYPE | 49 | 13 | 7 | 16 | 25 | 39 |
P value = 0.00381 (Fisher's exact test), Q value = 0.028
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 62 | 26 | 62 | 33 |
12P LOSS MUTATED | 15 | 10 | 5 | 4 |
12P LOSS WILD-TYPE | 47 | 16 | 57 | 29 |
P value = 0.0426 (Fisher's exact test), Q value = 0.15
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 64 | 67 | 35 | 12 |
12P LOSS MUTATED | 19 | 7 | 6 | 2 |
12P LOSS WILD-TYPE | 45 | 60 | 29 | 10 |
P value = 0.00056 (Fisher's exact test), Q value = 0.007
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 55 | 29 | 94 |
12P LOSS MUTATED | 13 | 12 | 9 |
12P LOSS WILD-TYPE | 42 | 17 | 85 |
P value = 0.0364 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 36 | 42 | 2 | 41 | 37 | 17 | 9 |
12Q LOSS MUTATED | 12 | 8 | 0 | 5 | 2 | 2 | 3 |
12Q LOSS WILD-TYPE | 24 | 34 | 2 | 36 | 35 | 15 | 6 |
P value = 0.0112 (Fisher's exact test), Q value = 0.061
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 67 | 20 | 96 |
12Q LOSS MUTATED | 15 | 7 | 10 |
12Q LOSS WILD-TYPE | 52 | 13 | 86 |
P value = 0.0417 (Fisher's exact test), Q value = 0.14
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 62 | 26 | 62 | 33 |
12Q LOSS MUTATED | 14 | 8 | 8 | 2 |
12Q LOSS WILD-TYPE | 48 | 18 | 54 | 31 |
P value = 0.0278 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 64 | 67 | 35 | 12 |
12Q LOSS MUTATED | 19 | 7 | 5 | 1 |
12Q LOSS WILD-TYPE | 45 | 60 | 30 | 11 |
P value = 0.0103 (Fisher's exact test), Q value = 0.057
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 55 | 29 | 94 |
12Q LOSS MUTATED | 12 | 10 | 10 |
12Q LOSS WILD-TYPE | 43 | 19 | 84 |
P value = 0.00326 (Fisher's exact test), Q value = 0.026
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 74 | 33 | 77 |
13Q LOSS MUTATED | 25 | 5 | 37 |
13Q LOSS WILD-TYPE | 49 | 28 | 40 |
P value = 0.0336 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 67 | 20 | 96 |
13Q LOSS MUTATED | 22 | 3 | 42 |
13Q LOSS WILD-TYPE | 45 | 17 | 54 |
P value = 0.0375 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 64 | 67 | 35 | 12 |
13Q LOSS MUTATED | 16 | 33 | 12 | 4 |
13Q LOSS WILD-TYPE | 48 | 34 | 23 | 8 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00059
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 74 | 33 | 77 |
14Q LOSS MUTATED | 33 | 0 | 12 |
14Q LOSS WILD-TYPE | 41 | 33 | 65 |
P value = 0.0198 (Fisher's exact test), Q value = 0.092
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 36 | 42 | 2 | 41 | 37 | 17 | 9 |
14Q LOSS MUTATED | 14 | 15 | 0 | 6 | 6 | 1 | 3 |
14Q LOSS WILD-TYPE | 22 | 27 | 2 | 35 | 31 | 16 | 6 |
P value = 0.00407 (Fisher's exact test), Q value = 0.03
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 26 | 28 | 30 | 34 | 8 |
14Q LOSS MUTATED | 10 | 12 | 7 | 3 | 0 |
14Q LOSS WILD-TYPE | 16 | 16 | 23 | 31 | 8 |
P value = 0.00289 (Fisher's exact test), Q value = 0.024
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 23 | 21 | 22 | 26 | 34 |
14Q LOSS MUTATED | 7 | 11 | 6 | 6 | 2 |
14Q LOSS WILD-TYPE | 16 | 10 | 16 | 20 | 32 |
P value = 0.00442 (Fisher's exact test), Q value = 0.031
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 73 | 14 | 42 | 29 | 9 | 16 |
14Q LOSS MUTATED | 27 | 6 | 6 | 4 | 0 | 2 |
14Q LOSS WILD-TYPE | 46 | 8 | 36 | 25 | 9 | 14 |
P value = 0.0187 (Fisher's exact test), Q value = 0.088
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 67 | 20 | 96 |
14Q LOSS MUTATED | 24 | 5 | 16 |
14Q LOSS WILD-TYPE | 43 | 15 | 80 |
P value = 0.0169 (Fisher's exact test), Q value = 0.082
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 70 | 15 | 10 | 18 | 28 | 42 |
14Q LOSS MUTATED | 26 | 2 | 4 | 4 | 4 | 5 |
14Q LOSS WILD-TYPE | 44 | 13 | 6 | 14 | 24 | 37 |
P value = 0.00283 (Fisher's exact test), Q value = 0.024
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 62 | 26 | 62 | 33 |
14Q LOSS MUTATED | 26 | 4 | 10 | 5 |
14Q LOSS WILD-TYPE | 36 | 22 | 52 | 28 |
P value = 0.0419 (Fisher's exact test), Q value = 0.14
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 64 | 67 | 35 | 12 |
14Q LOSS MUTATED | 24 | 11 | 8 | 2 |
14Q LOSS WILD-TYPE | 40 | 56 | 27 | 10 |
P value = 0.00251 (Fisher's exact test), Q value = 0.022
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 55 | 29 | 94 |
14Q LOSS MUTATED | 23 | 7 | 15 |
14Q LOSS WILD-TYPE | 32 | 22 | 79 |
P value = 0.0363 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 67 | 20 | 96 |
15Q LOSS MUTATED | 28 | 6 | 22 |
15Q LOSS WILD-TYPE | 39 | 14 | 74 |
P value = 0.00432 (Fisher's exact test), Q value = 0.03
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 62 | 26 | 62 | 33 |
15Q LOSS MUTATED | 18 | 16 | 14 | 8 |
15Q LOSS WILD-TYPE | 44 | 10 | 48 | 25 |
P value = 0.00055 (Fisher's exact test), Q value = 0.0069
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 55 | 29 | 94 |
15Q LOSS MUTATED | 16 | 18 | 22 |
15Q LOSS WILD-TYPE | 39 | 11 | 72 |
P value = 0.00075 (Fisher's exact test), Q value = 0.0087
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 74 | 33 | 77 |
16P LOSS MUTATED | 33 | 8 | 13 |
16P LOSS WILD-TYPE | 41 | 25 | 64 |
P value = 0.00728 (Fisher's exact test), Q value = 0.043
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 36 | 42 | 2 | 41 | 37 | 17 | 9 |
16P LOSS MUTATED | 16 | 19 | 0 | 6 | 7 | 5 | 1 |
16P LOSS WILD-TYPE | 20 | 23 | 2 | 35 | 30 | 12 | 8 |
P value = 0.00322 (Fisher's exact test), Q value = 0.026
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 73 | 14 | 42 | 29 | 9 | 16 |
16P LOSS MUTATED | 31 | 6 | 4 | 6 | 2 | 5 |
16P LOSS WILD-TYPE | 42 | 8 | 38 | 23 | 7 | 11 |
P value = 1e-04 (Fisher's exact test), Q value = 0.0019
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 67 | 20 | 96 |
16P LOSS MUTATED | 27 | 11 | 16 |
16P LOSS WILD-TYPE | 40 | 9 | 80 |
P value = 0.00675 (Fisher's exact test), Q value = 0.041
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 70 | 15 | 10 | 18 | 28 | 42 |
16P LOSS MUTATED | 30 | 6 | 2 | 5 | 5 | 5 |
16P LOSS WILD-TYPE | 40 | 9 | 8 | 13 | 23 | 37 |
P value = 0.00024 (Fisher's exact test), Q value = 0.0036
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 62 | 26 | 62 | 33 |
16P LOSS MUTATED | 30 | 8 | 10 | 5 |
16P LOSS WILD-TYPE | 32 | 18 | 52 | 28 |
P value = 0.00042 (Fisher's exact test), Q value = 0.0057
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 64 | 67 | 35 | 12 |
16P LOSS MUTATED | 30 | 10 | 7 | 4 |
16P LOSS WILD-TYPE | 34 | 57 | 28 | 8 |
P value = 0.00026 (Fisher's exact test), Q value = 0.0038
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 55 | 29 | 94 |
16P LOSS MUTATED | 25 | 11 | 15 |
16P LOSS WILD-TYPE | 30 | 18 | 79 |
P value = 5e-05 (Fisher's exact test), Q value = 0.0012
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 74 | 33 | 77 |
16Q LOSS MUTATED | 35 | 8 | 10 |
16Q LOSS WILD-TYPE | 39 | 25 | 67 |
P value = 0.00048 (Fisher's exact test), Q value = 0.0063
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 36 | 42 | 2 | 41 | 37 | 17 | 9 |
16Q LOSS MUTATED | 18 | 18 | 0 | 6 | 4 | 4 | 3 |
16Q LOSS WILD-TYPE | 18 | 24 | 2 | 35 | 33 | 13 | 6 |
P value = 0.0368 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 26 | 28 | 30 | 34 | 8 |
16Q LOSS MUTATED | 10 | 10 | 4 | 4 | 2 |
16Q LOSS WILD-TYPE | 16 | 18 | 26 | 30 | 6 |
P value = 0.0288 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 23 | 21 | 22 | 26 | 34 |
16Q LOSS MUTATED | 9 | 9 | 3 | 3 | 6 |
16Q LOSS WILD-TYPE | 14 | 12 | 19 | 23 | 28 |
P value = 0.00046 (Fisher's exact test), Q value = 0.0062
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 73 | 14 | 42 | 29 | 9 | 16 |
16Q LOSS MUTATED | 32 | 6 | 5 | 3 | 1 | 6 |
16Q LOSS WILD-TYPE | 41 | 8 | 37 | 26 | 8 | 10 |
P value = 2e-05 (Fisher's exact test), Q value = 0.00075
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 67 | 20 | 96 |
16Q LOSS MUTATED | 31 | 9 | 13 |
16Q LOSS WILD-TYPE | 36 | 11 | 83 |
P value = 0.00016 (Fisher's exact test), Q value = 0.0026
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 70 | 15 | 10 | 18 | 28 | 42 |
16Q LOSS MUTATED | 33 | 4 | 2 | 5 | 2 | 6 |
16Q LOSS WILD-TYPE | 37 | 11 | 8 | 13 | 26 | 36 |
P value = 2e-05 (Fisher's exact test), Q value = 0.00075
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 62 | 26 | 62 | 33 |
16Q LOSS MUTATED | 31 | 9 | 8 | 4 |
16Q LOSS WILD-TYPE | 31 | 17 | 54 | 29 |
P value = 2e-05 (Fisher's exact test), Q value = 0.00075
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 64 | 67 | 35 | 12 |
16Q LOSS MUTATED | 33 | 10 | 5 | 2 |
16Q LOSS WILD-TYPE | 31 | 57 | 30 | 10 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00059
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 55 | 29 | 94 |
16Q LOSS MUTATED | 26 | 12 | 12 |
16Q LOSS WILD-TYPE | 29 | 17 | 82 |
P value = 0.00012 (Fisher's exact test), Q value = 0.0021
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 74 | 33 | 77 |
17P LOSS MUTATED | 43 | 8 | 21 |
17P LOSS WILD-TYPE | 31 | 25 | 56 |
P value = 0.00071 (Fisher's exact test), Q value = 0.0083
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 36 | 42 | 2 | 41 | 37 | 17 | 9 |
17P LOSS MUTATED | 18 | 26 | 1 | 15 | 7 | 4 | 1 |
17P LOSS WILD-TYPE | 18 | 16 | 1 | 26 | 30 | 13 | 8 |
P value = 0.0157 (Fisher's exact test), Q value = 0.078
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 73 | 14 | 42 | 29 | 9 | 16 |
17P LOSS MUTATED | 40 | 6 | 10 | 9 | 3 | 4 |
17P LOSS WILD-TYPE | 33 | 8 | 32 | 20 | 6 | 12 |
P value = 0.00143 (Fisher's exact test), Q value = 0.014
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 67 | 20 | 96 |
17P LOSS MUTATED | 36 | 10 | 26 |
17P LOSS WILD-TYPE | 31 | 10 | 70 |
P value = 0.00455 (Fisher's exact test), Q value = 0.031
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 70 | 15 | 10 | 18 | 28 | 42 |
17P LOSS MUTATED | 39 | 6 | 5 | 6 | 6 | 10 |
17P LOSS WILD-TYPE | 31 | 9 | 5 | 12 | 22 | 32 |
P value = 0.00209 (Fisher's exact test), Q value = 0.019
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 62 | 26 | 62 | 33 |
17P LOSS MUTATED | 33 | 14 | 18 | 7 |
17P LOSS WILD-TYPE | 29 | 12 | 44 | 26 |
P value = 0.0452 (Fisher's exact test), Q value = 0.15
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 64 | 67 | 35 | 12 |
17P LOSS MUTATED | 34 | 22 | 11 | 3 |
17P LOSS WILD-TYPE | 30 | 45 | 24 | 9 |
P value = 0.00024 (Fisher's exact test), Q value = 0.0036
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 55 | 29 | 94 |
17P LOSS MUTATED | 29 | 17 | 24 |
17P LOSS WILD-TYPE | 26 | 12 | 70 |
P value = 2e-05 (Fisher's exact test), Q value = 0.00075
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 74 | 33 | 77 |
18P LOSS MUTATED | 43 | 5 | 21 |
18P LOSS WILD-TYPE | 31 | 28 | 56 |
P value = 0.018 (Fisher's exact test), Q value = 0.086
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 36 | 42 | 2 | 41 | 37 | 17 | 9 |
18P LOSS MUTATED | 18 | 23 | 0 | 9 | 12 | 4 | 3 |
18P LOSS WILD-TYPE | 18 | 19 | 2 | 32 | 25 | 13 | 6 |
P value = 0.017 (Fisher's exact test), Q value = 0.082
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 73 | 14 | 42 | 29 | 9 | 16 |
18P LOSS MUTATED | 39 | 3 | 11 | 8 | 2 | 5 |
18P LOSS WILD-TYPE | 34 | 11 | 31 | 21 | 7 | 11 |
P value = 0.00395 (Fisher's exact test), Q value = 0.029
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 67 | 20 | 96 |
18P LOSS MUTATED | 33 | 10 | 25 |
18P LOSS WILD-TYPE | 34 | 10 | 71 |
P value = 0.00368 (Fisher's exact test), Q value = 0.028
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 70 | 15 | 10 | 18 | 28 | 42 |
18P LOSS MUTATED | 38 | 2 | 1 | 5 | 11 | 12 |
18P LOSS WILD-TYPE | 32 | 13 | 9 | 13 | 17 | 30 |
P value = 0.0199 (Fisher's exact test), Q value = 0.092
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 62 | 26 | 62 | 33 |
18P LOSS MUTATED | 31 | 12 | 19 | 7 |
18P LOSS WILD-TYPE | 31 | 14 | 43 | 26 |
P value = 0.00878 (Fisher's exact test), Q value = 0.05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 64 | 67 | 35 | 12 |
18P LOSS MUTATED | 31 | 15 | 15 | 6 |
18P LOSS WILD-TYPE | 33 | 52 | 20 | 6 |
P value = 0.00566 (Fisher's exact test), Q value = 0.036
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 55 | 29 | 94 |
18P LOSS MUTATED | 28 | 14 | 25 |
18P LOSS WILD-TYPE | 27 | 15 | 69 |
P value = 5e-05 (Fisher's exact test), Q value = 0.0012
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 74 | 33 | 77 |
18Q LOSS MUTATED | 54 | 9 | 40 |
18Q LOSS WILD-TYPE | 20 | 24 | 37 |
P value = 0.0296 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 36 | 42 | 2 | 41 | 37 | 17 | 9 |
18Q LOSS MUTATED | 24 | 29 | 0 | 16 | 21 | 7 | 6 |
18Q LOSS WILD-TYPE | 12 | 13 | 2 | 25 | 16 | 10 | 3 |
P value = 0.00528 (Fisher's exact test), Q value = 0.034
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 73 | 14 | 42 | 29 | 9 | 16 |
18Q LOSS MUTATED | 51 | 3 | 24 | 13 | 5 | 6 |
18Q LOSS WILD-TYPE | 22 | 11 | 18 | 16 | 4 | 10 |
P value = 0.0191 (Fisher's exact test), Q value = 0.09
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 67 | 20 | 96 |
18Q LOSS MUTATED | 44 | 14 | 44 |
18Q LOSS WILD-TYPE | 23 | 6 | 52 |
P value = 0.00244 (Fisher's exact test), Q value = 0.022
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 70 | 15 | 10 | 18 | 28 | 42 |
18Q LOSS MUTATED | 49 | 8 | 1 | 6 | 15 | 24 |
18Q LOSS WILD-TYPE | 21 | 7 | 9 | 12 | 13 | 18 |
P value = 0.00028 (Fisher's exact test), Q value = 0.004
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 62 | 26 | 62 | 33 |
18Q LOSS MUTATED | 35 | 23 | 34 | 11 |
18Q LOSS WILD-TYPE | 27 | 3 | 28 | 22 |
P value = 0.0435 (Fisher's exact test), Q value = 0.15
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 64 | 67 | 35 | 12 |
18Q LOSS MUTATED | 42 | 29 | 23 | 7 |
18Q LOSS WILD-TYPE | 22 | 38 | 12 | 5 |
P value = 0.00016 (Fisher's exact test), Q value = 0.0026
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 55 | 29 | 94 |
18Q LOSS MUTATED | 31 | 26 | 44 |
18Q LOSS WILD-TYPE | 24 | 3 | 50 |
P value = 0.046 (Fisher's exact test), Q value = 0.15
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 55 | 29 | 94 |
19P LOSS MUTATED | 26 | 6 | 32 |
19P LOSS WILD-TYPE | 29 | 23 | 62 |
P value = 0.0422 (Fisher's exact test), Q value = 0.14
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 74 | 33 | 77 |
19Q LOSS MUTATED | 21 | 4 | 27 |
19Q LOSS WILD-TYPE | 53 | 29 | 50 |
P value = 0.0274 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 67 | 20 | 96 |
19Q LOSS MUTATED | 19 | 1 | 32 |
19Q LOSS WILD-TYPE | 48 | 19 | 64 |
P value = 0.007 (Fisher's exact test), Q value = 0.043
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 74 | 33 | 77 |
21Q LOSS MUTATED | 51 | 12 | 45 |
21Q LOSS WILD-TYPE | 23 | 21 | 32 |
P value = 0.00855 (Fisher's exact test), Q value = 0.05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 36 | 42 | 2 | 41 | 37 | 17 | 9 |
21Q LOSS MUTATED | 22 | 32 | 0 | 24 | 22 | 6 | 2 |
21Q LOSS WILD-TYPE | 14 | 10 | 2 | 17 | 15 | 11 | 7 |
P value = 2e-05 (Fisher's exact test), Q value = 0.00075
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 74 | 33 | 77 |
22Q LOSS MUTATED | 46 | 8 | 19 |
22Q LOSS WILD-TYPE | 28 | 25 | 58 |
P value = 9e-04 (Fisher's exact test), Q value = 0.0097
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 36 | 42 | 2 | 41 | 37 | 17 | 9 |
22Q LOSS MUTATED | 23 | 23 | 0 | 10 | 10 | 5 | 2 |
22Q LOSS WILD-TYPE | 13 | 19 | 2 | 31 | 27 | 12 | 7 |
P value = 0.0131 (Fisher's exact test), Q value = 0.069
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 26 | 28 | 30 | 34 | 8 |
22Q LOSS MUTATED | 16 | 10 | 11 | 7 | 1 |
22Q LOSS WILD-TYPE | 10 | 18 | 19 | 27 | 7 |
P value = 0.00012 (Fisher's exact test), Q value = 0.0021
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 73 | 14 | 42 | 29 | 9 | 16 |
22Q LOSS MUTATED | 43 | 8 | 10 | 7 | 2 | 3 |
22Q LOSS WILD-TYPE | 30 | 6 | 32 | 22 | 7 | 13 |
P value = 6e-05 (Fisher's exact test), Q value = 0.0013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 67 | 20 | 96 |
22Q LOSS MUTATED | 39 | 9 | 25 |
22Q LOSS WILD-TYPE | 28 | 11 | 71 |
P value = 0.00709 (Fisher's exact test), Q value = 0.043
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 70 | 15 | 10 | 18 | 28 | 42 |
22Q LOSS MUTATED | 39 | 5 | 5 | 7 | 8 | 9 |
22Q LOSS WILD-TYPE | 31 | 10 | 5 | 11 | 20 | 33 |
P value = 0.00016 (Fisher's exact test), Q value = 0.0026
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 62 | 26 | 62 | 33 |
22Q LOSS MUTATED | 38 | 11 | 14 | 10 |
22Q LOSS WILD-TYPE | 24 | 15 | 48 | 23 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00059
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 64 | 67 | 35 | 12 |
22Q LOSS MUTATED | 42 | 18 | 8 | 4 |
22Q LOSS WILD-TYPE | 22 | 49 | 27 | 8 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00059
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 55 | 29 | 94 |
22Q LOSS MUTATED | 34 | 15 | 23 |
22Q LOSS WILD-TYPE | 21 | 14 | 71 |
P value = 0.0439 (Fisher's exact test), Q value = 0.15
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 26 | 28 | 30 | 34 | 8 |
XP LOSS MUTATED | 14 | 7 | 6 | 15 | 2 |
XP LOSS WILD-TYPE | 12 | 21 | 24 | 19 | 6 |
P value = 0.0267 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 73 | 14 | 42 | 29 | 9 | 16 |
XP LOSS MUTATED | 25 | 8 | 11 | 13 | 2 | 1 |
XP LOSS WILD-TYPE | 48 | 6 | 31 | 16 | 7 | 15 |
P value = 1e-04 (Fisher's exact test), Q value = 0.0019
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 26 | 28 | 30 | 34 | 8 |
XQ LOSS MUTATED | 14 | 3 | 1 | 8 | 1 |
XQ LOSS WILD-TYPE | 12 | 25 | 29 | 26 | 7 |
P value = 0.0261 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 23 | 21 | 22 | 26 | 34 |
XQ LOSS MUTATED | 11 | 3 | 2 | 5 | 6 |
XQ LOSS WILD-TYPE | 12 | 18 | 20 | 21 | 28 |
P value = 0.0105 (Fisher's exact test), Q value = 0.058
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 73 | 14 | 42 | 29 | 9 | 16 |
XQ LOSS MUTATED | 21 | 6 | 3 | 7 | 1 | 1 |
XQ LOSS WILD-TYPE | 52 | 8 | 39 | 22 | 8 | 15 |
P value = 0.00295 (Fisher's exact test), Q value = 0.024
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 62 | 26 | 62 | 33 |
XQ LOSS MUTATED | 22 | 3 | 6 | 8 |
XQ LOSS WILD-TYPE | 40 | 23 | 56 | 25 |
P value = 0.0134 (Fisher's exact test), Q value = 0.07
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 55 | 29 | 94 |
XQ LOSS MUTATED | 19 | 4 | 14 |
XQ LOSS WILD-TYPE | 36 | 25 | 80 |
-
Copy number data file = broad_values_by_arm.txt from GISTIC pipeline
-
Processed Copy number data file = /xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/ESCA-TP/22519067/transformed.cor.cli.txt
-
Molecular subtypes file = /xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/ESCA-TP/22541001/ESCA-TP.transferedmergedcluster.txt
-
Number of patients = 184
-
Number of significantly arm-level cnvs = 82
-
Number of molecular subtypes = 10
-
Exclude genes that fewer than K tumors have mutations, K = 3
For binary or multi-class clinical features (nominal or ordinal), two-tailed Fisher's exact tests (Fisher 1922) were used to estimate the P values using the 'fisher.test' function in R
For multiple hypothesis correction, Q value is the False Discovery Rate (FDR) analogue of the P value (Benjamini and Hochberg 1995), defined as the minimum FDR at which the test may be called significant. We used the 'Benjamini and Hochberg' method of 'p.adjust' function in R to convert P values into Q values.
In addition to the links below, the full results of the analysis summarized in this report can also be downloaded programmatically using firehose_get, or interactively from either the Broad GDAC website or TCGA Data Coordination Center Portal.