name	nmut	n_coding	n_flank	n_coding_nonsilent	fracflank	callscheme	callscheme_name	N_tot	nsil_tot	nnon_tot	rate_sil	rate_non
TCGA-02-0003-01A-01D-1490-08	61	59	2	46	3.278689e-02	0	coding only	34834024	12	45	3.444908e-07	1.291840e-06
TCGA-02-0033-01A-01D-1490-08	50	47	3	34	6.000000e-02	0	coding only	34834024	12	31	3.444908e-07	8.899345e-07
TCGA-02-0047-01A-01D-1490-08	86	85	1	70	1.162791e-02	0	coding only	34834024	14	67	4.019059e-07	1.923407e-06
TCGA-02-0055-01A-01D-1490-08	80	77	3	56	3.750000e-02	0	coding only	34834024	20	53	5.741513e-07	1.521501e-06
TCGA-02-2470-01A-01D-1494-08	83	79	4	61	4.819277e-02	0	coding only	34834024	17	55	4.880286e-07	1.578916e-06
TCGA-02-2483-01A-01D-1494-08	71	70	1	53	1.408451e-02	0	coding only	34834024	17	52	4.880286e-07	1.492793e-06
TCGA-02-2485-01A-01D-1494-08	78	76	2	58	2.564103e-02	0	coding only	34834024	16	56	4.593210e-07	1.607624e-06
TCGA-02-2486-01A-01D-1494-08	72	71	1	56	1.388889e-02	0	coding only	34834024	14	52	4.019059e-07	1.492793e-06
TCGA-06-0119-01A-08D-1490-08	80	79	1	68	1.250000e-02	0	coding only	34834024	9	65	2.583681e-07	1.865992e-06
TCGA-06-0122-01A-01D-1490-08	99	96	3	70	3.030303e-02	0	coding only	34834024	23	67	6.602740e-07	1.923407e-06
TCGA-06-0124-01A-01D-1490-08	75	73	2	57	2.666667e-02	0	coding only	34834024	15	55	4.306135e-07	1.578916e-06
TCGA-06-0126-01A-01D-1490-08	67	65	2	49	2.985075e-02	0	coding only	34834024	16	47	4.593210e-07	1.349256e-06
TCGA-06-0128-01A-01D-1490-08	84	81	3	61	3.571429e-02	0	coding only	34834024	20	60	5.741513e-07	1.722454e-06
TCGA-06-0129-01A-01D-1490-08	52	52	0	44	0	0	coding only	34834024	7	43	2.009530e-07	1.234425e-06
TCGA-06-0130-01A-01D-1490-08	36	36	0	28	0	0	coding only	34834024	7	27	2.009530e-07	7.751042e-07
TCGA-06-0132-01A-02D-1491-08	38	38	0	24	0	0	coding only	34834024	12	24	3.444908e-07	6.889816e-07
TCGA-06-0137-01A-01D-1490-08	103	102	1	66	9.708738e-03	0	coding only	34834024	31	62	8.899345e-07	1.779869e-06
TCGA-06-0139-01A-01D-1490-08	10	10	0	8	0	0	coding only	34834024	2	7	5.741513e-08	2.009530e-07
TCGA-06-0140-01A-01D-1490-08	55	54	1	42	1.818182e-02	0	coding only	34834024	12	39	3.444908e-07	1.119595e-06
TCGA-06-0141-01A-01D-1490-08	32	31	1	24	3.125000e-02	0	coding only	34834024	7	24	2.009530e-07	6.889816e-07
TCGA-06-0142-01A-01D-1490-08	56	56	0	44	0	0	coding only	34834024	12	40	3.444908e-07	1.148303e-06
TCGA-06-0145-01A-01W-0224-08	109	106	3	83	2.752294e-02	0	coding only	34834024	20	81	5.741513e-07	2.325313e-06
TCGA-06-0151-01A-01D-1491-08	29	29	0	26	0	0	coding only	34834024	3	25	8.612269e-08	7.176891e-07
TCGA-06-0152-01A-02W-0323-08	79	75	4	52	5.063291e-02	0	coding only	34834024	22	50	6.315664e-07	1.435378e-06
TCGA-06-0154-01A-03D-1491-08	78	77	1	60	1.282051e-02	0	coding only	34834024	17	58	4.880286e-07	1.665039e-06
TCGA-06-0155-01B-01D-1492-08	90	89	1	69	1.111111e-02	0	coding only	34834024	18	68	5.167362e-07	1.952114e-06
TCGA-06-0157-01A-01D-1491-08	63	63	0	48	0	0	coding only	34834024	15	47	4.306135e-07	1.349256e-06
TCGA-06-0158-01A-01D-1491-08	71	68	3	50	4.225352e-02	0	coding only	34834024	18	48	5.167362e-07	1.377963e-06
TCGA-06-0165-01A-01D-1491-08	8	8	0	8	0	0	coding only	34834024	0	8	0	2.296605e-07
TCGA-06-0166-01A-01D-1491-08	57	54	3	49	5.263158e-02	0	coding only	34834024	5	49	1.435378e-07	1.406671e-06
TCGA-06-0167-01A-01D-1491-08	6	6	0	3	0	0	coding only	34834024	3	3	8.612269e-08	8.612269e-08
TCGA-06-0168-01A-01D-1491-08	58	57	1	43	1.724138e-02	0	coding only	34834024	14	38	4.019059e-07	1.090887e-06
TCGA-06-0169-01A-01D-1490-08	69	67	2	49	2.898551e-02	0	coding only	34834024	17	46	4.880286e-07	1.320548e-06
TCGA-06-0173-01A-01D-1491-08	104	101	3	79	2.884615e-02	0	coding only	34834024	22	74	6.315664e-07	2.124360e-06
TCGA-06-0174-01A-01D-1491-08	101	98	3	77	2.970297e-02	0	coding only	34834024	21	74	6.028589e-07	2.124360e-06
TCGA-06-0178-01A-01D-1491-08	3	2	1	2	3.333333e-01	0	coding only	34834024	0	2	0	5.741513e-08
TCGA-06-0184-01A-01D-1491-08	67	66	1	48	1.492537e-02	0	coding only	34834024	17	46	4.880286e-07	1.320548e-06
TCGA-06-0185-01A-01W-0254-08	85	83	2	65	2.352941e-02	0	coding only	34834024	16	61	4.593210e-07	1.751161e-06
TCGA-06-0188-01A-01W-0254-08	60	58	2	42	3.333333e-02	0	coding only	34834024	15	39	4.306135e-07	1.119595e-06
TCGA-06-0189-01A-01D-1491-08	29	29	0	25	0	0	coding only	34834024	4	23	1.148303e-07	6.602740e-07
TCGA-06-0192-01B-01W-0348-08	85	84	1	60	1.176471e-02	0	coding only	34834024	23	57	6.602740e-07	1.636331e-06
TCGA-06-0195-01B-01D-1491-08	97	90	7	74	7.216495e-02	0	coding only	34834024	16	71	4.593210e-07	2.038237e-06
TCGA-06-0209-01A-01D-1491-08	88	86	2	66	2.272727e-02	0	coding only	34834024	19	58	5.454437e-07	1.665039e-06
TCGA-06-0213-01A-01D-1491-08	76	73	3	55	3.947368e-02	0	coding only	34834024	17	54	4.880286e-07	1.550208e-06
TCGA-06-0214-01A-02D-1491-08	90	89	1	63	1.111111e-02	0	coding only	34834024	26	62	7.463967e-07	1.779869e-06
TCGA-06-0216-01B-01D-1492-08	73	72	1	51	1.369863e-02	0	coding only	34834024	21	49	6.028589e-07	1.406671e-06
TCGA-06-0219-01A-01D-1491-08	53	53	0	42	0	0	coding only	34834024	10	38	2.870756e-07	1.090887e-06
TCGA-06-0237-01A-02D-1491-08	58	56	2	39	3.448276e-02	0	coding only	34834024	15	37	4.306135e-07	1.062180e-06
TCGA-06-0238-01A-02D-1492-08	45	45	0	40	0	0	coding only	34834024	5	36	1.435378e-07	1.033472e-06
TCGA-06-0240-01A-03D-1491-08	14	14	0	12	0	0	coding only	34834024	2	11	5.741513e-08	3.157832e-07
TCGA-06-0241-01A-02D-1491-08	76	74	2	52	2.631579e-02	0	coding only	34834024	22	50	6.315664e-07	1.435378e-06
TCGA-06-0644-01A-02D-1492-08	78	77	1	51	1.282051e-02	0	coding only	34834024	25	45	7.176891e-07	1.291840e-06
TCGA-06-0645-01A-01D-1492-08	74	73	1	52	1.351351e-02	0	coding only	34834024	19	52	5.454437e-07	1.492793e-06
TCGA-06-0646-01A-01D-1492-08	53	52	1	38	1.886792e-02	0	coding only	34834024	14	37	4.019059e-07	1.062180e-06
TCGA-06-0648-01A-01W-0323-08	90	88	2	63	2.222222e-02	0	coding only	34834024	23	59	6.602740e-07	1.693746e-06
TCGA-06-0649-01B-01W-0348-08	127	125	2	92	1.574803e-02	0	coding only	34834024	32	87	9.186421e-07	2.497558e-06
TCGA-06-0650-01A-02D-1696-08	43	43	0	33	0	0	coding only	34834024	10	30	2.870756e-07	8.612269e-07
TCGA-06-0686-01A-01W-0348-08	81	80	1	66	1.234568e-02	0	coding only	34834024	14	64	4.019059e-07	1.837284e-06
TCGA-06-0743-01A-01D-1492-08	124	119	5	85	4.032258e-02	1	exome+100bp flanks	34834024	33	80	9.473496e-07	2.296605e-06
TCGA-06-0744-01A-01W-0348-08	99	95	4	72	4.040404e-02	0	coding only	34834024	20	69	5.741513e-07	1.980822e-06
TCGA-06-0745-01A-01W-0348-08	58	55	3	43	5.172414e-02	0	coding only	34834024	11	43	3.157832e-07	1.234425e-06
TCGA-06-0747-01A-01W-0348-08	94	92	2	72	2.127660e-02	0	coding only	34834024	19	70	5.454437e-07	2.009530e-06
TCGA-06-0749-01A-01W-0348-08	73	70	3	49	4.109589e-02	0	coding only	34834024	18	49	5.167362e-07	1.406671e-06
TCGA-06-0750-01A-01W-0348-08	48	47	1	37	2.083333e-02	0	coding only	34834024	9	35	2.583681e-07	1.004765e-06
TCGA-06-0875-01A-01W-0424-08	78	77	1	62	1.282051e-02	0	coding only	34834024	14	61	4.019059e-07	1.751161e-06
TCGA-06-0876-01A-01W-0424-08	88	87	1	64	1.136364e-02	0	coding only	34834024	22	61	6.315664e-07	1.751161e-06
TCGA-06-0877-01A-01W-0424-08	89	89	0	66	0	0	coding only	34834024	22	65	6.315664e-07	1.865992e-06
TCGA-06-0878-01A-01W-0424-08	62	59	3	43	4.838710e-02	0	coding only	34834024	15	41	4.306135e-07	1.177010e-06
TCGA-06-0879-01A-01W-0424-08	70	69	1	49	1.428571e-02	0	coding only	34834024	19	46	5.454437e-07	1.320548e-06
TCGA-06-0881-01A-02W-0424-08	34	31	3	24	8.823529e-02	0	coding only	34834024	7	24	2.009530e-07	6.889816e-07
TCGA-06-0882-01A-01W-0424-08	51	50	1	35	1.960784e-02	0	coding only	34834024	15	34	4.306135e-07	9.760572e-07
TCGA-06-0939-01A-01D-1353-08	111	110	1	76	9.009009e-03	0	coding only	34834024	33	71	9.473496e-07	2.038237e-06
TCGA-06-1804-01A-01D-1696-08	101	99	2	68	1.980198e-02	0	coding only	34834024	30	60	8.612269e-07	1.722454e-06
TCGA-06-1806-01A-02D-1845-08	38	37	1	25	2.631579e-02	0	coding only	34834024	11	25	3.157832e-07	7.176891e-07
TCGA-06-2557-01A-01D-1494-08	71	67	4	44	5.633803e-02	0	coding only	34834024	22	42	6.315664e-07	1.205718e-06
TCGA-06-2558-01A-01D-1494-08	101	95	6	70	5.940594e-02	1	exome+100bp flanks	34834024	23	63	6.602740e-07	1.808577e-06
TCGA-06-2559-01A-01D-1494-08	89	84	5	59	5.617978e-02	0	coding only	34834024	24	55	6.889816e-07	1.578916e-06
TCGA-06-2561-01A-02D-1494-08	48	48	0	42	0	0	coding only	34834024	6	38	1.722454e-07	1.090887e-06
TCGA-06-2562-01A-01D-1494-08	86	83	3	63	3.488372e-02	0	coding only	34834024	20	59	5.741513e-07	1.693746e-06
TCGA-06-2563-01A-01D-1494-08	91	87	4	67	4.395604e-02	0	coding only	34834024	19	65	5.454437e-07	1.865992e-06
TCGA-06-2564-01A-01D-1494-08	82	79	3	59	3.658537e-02	0	coding only	34834024	20	53	5.741513e-07	1.521501e-06
TCGA-06-2565-01A-01D-1494-08	74	72	2	58	2.702703e-02	0	coding only	34834024	14	55	4.019059e-07	1.578916e-06
TCGA-06-2567-01A-01D-1494-08	76	76	0	53	0	0	coding only	34834024	23	51	6.602740e-07	1.464086e-06
TCGA-06-2569-01A-01D-1494-08	40	37	3	30	7.500000e-02	0	coding only	34834024	7	29	2.009530e-07	8.325194e-07
TCGA-06-2570-01A-01D-1495-08	47	46	1	35	2.127660e-02	0	coding only	34834024	11	32	3.157832e-07	9.186421e-07
TCGA-06-5408-01A-01D-1696-08	65	60	5	44	7.692308e-02	0	coding only	34834024	16	39	4.593210e-07	1.119595e-06
TCGA-06-5410-01A-01D-1696-08	38	38	0	24	0	0	coding only	34834024	14	23	4.019059e-07	6.602740e-07
TCGA-06-5411-01A-01D-1696-08	50	46	4	36	8.000000e-02	0	coding only	34834024	8	34	2.296605e-07	9.760572e-07
TCGA-06-5412-01A-01D-1696-08	74	72	2	55	2.702703e-02	0	coding only	34834024	16	53	4.593210e-07	1.521501e-06
TCGA-06-5413-01A-01D-1696-08	68	61	7	46	1.029412e-01	0	coding only	34834024	15	45	4.306135e-07	1.291840e-06
TCGA-06-5414-01A-01D-1486-08	51	49	2	35	3.921569e-02	0	coding only	34834024	14	35	4.019059e-07	1.004765e-06
TCGA-06-5415-01A-01D-1486-08	73	71	2	47	2.739726e-02	0	coding only	34834024	24	47	6.889816e-07	1.349256e-06
TCGA-06-5417-01A-01D-1486-08	71	69	2	53	2.816901e-02	0	coding only	34834024	15	53	4.306135e-07	1.521501e-06
TCGA-06-5418-01A-01D-1486-08	58	57	1	38	1.724138e-02	0	coding only	34834024	17	38	4.880286e-07	1.090887e-06
TCGA-06-5856-01A-01D-1696-08	69	69	0	55	0	0	coding only	34834024	14	54	4.019059e-07	1.550208e-06
TCGA-06-5858-01A-01D-1696-08	264	259	5	174	1.893939e-02	0	coding only	34834024	84	164	2.411435e-06	4.708041e-06
TCGA-06-5859-01A-01D-1696-08	54	52	2	40	3.703704e-02	0	coding only	34834024	11	39	3.157832e-07	1.119595e-06
TCGA-06-6388-01A-12D-1845-08	67	63	4	43	5.970149e-02	0	coding only	34834024	19	40	5.454437e-07	1.148303e-06
TCGA-06-6389-01A-11D-1696-08	50	48	2	33	4.000000e-02	0	coding only	34834024	15	32	4.306135e-07	9.186421e-07
TCGA-06-6390-01A-11D-1696-08	56	55	1	38	1.785714e-02	0	coding only	34834024	16	36	4.593210e-07	1.033472e-06
TCGA-06-6391-01A-11D-1696-08	78	77	1	58	1.282051e-02	0	coding only	34834024	17	56	4.880286e-07	1.607624e-06
TCGA-06-6693-01A-11D-1845-08	66	61	5	45	7.575758e-02	0	coding only	34834024	15	45	4.306135e-07	1.291840e-06
TCGA-06-6694-01A-12D-1845-08	114	112	2	69	1.754386e-02	0	coding only	34834024	42	66	1.205718e-06	1.894699e-06
TCGA-06-6695-01A-11D-1845-08	71	68	3	53	4.225352e-02	0	coding only	34834024	15	50	4.306135e-07	1.435378e-06
TCGA-06-6697-01A-11D-1845-08	80	78	2	62	2.500000e-02	0	coding only	34834024	16	60	4.593210e-07	1.722454e-06
TCGA-06-6698-01A-11D-1845-08	51	51	0	41	0	0	coding only	34834024	10	38	2.870756e-07	1.090887e-06
TCGA-06-6699-01A-11D-1845-08	76	75	1	58	1.315789e-02	0	coding only	34834024	15	57	4.306135e-07	1.636331e-06
TCGA-06-6700-01A-12D-1845-08	63	61	2	48	3.174603e-02	0	coding only	34834024	10	44	2.870756e-07	1.263133e-06
TCGA-06-6701-01A-11D-1845-08	50	49	1	38	2.000000e-02	0	coding only	34834024	11	34	3.157832e-07	9.760572e-07
TCGA-08-0386-01A-01D-1492-08	17	17	0	11	0	0	coding only	34834024	6	11	1.722454e-07	3.157832e-07
TCGA-12-0615-01A-01D-1492-08	77	75	2	55	2.597403e-02	0	coding only	34834024	20	51	5.741513e-07	1.464086e-06
TCGA-12-0616-01A-01D-1492-08	53	51	2	36	3.773585e-02	0	coding only	34834024	15	34	4.306135e-07	9.760572e-07
TCGA-12-0618-01A-01D-1492-08	66	65	1	53	1.515152e-02	0	coding only	34834024	12	49	3.444908e-07	1.406671e-06
TCGA-12-0619-01A-01D-1492-08	69	68	1	55	1.449275e-02	0	coding only	34834024	13	51	3.731983e-07	1.464086e-06
TCGA-12-0688-01A-02D-1492-08	73	70	3	43	4.109589e-02	0	coding only	34834024	23	39	6.602740e-07	1.119595e-06
TCGA-12-0692-01A-01W-0348-08	89	86	3	66	3.370787e-02	0	coding only	34834024	19	63	5.454437e-07	1.808577e-06
TCGA-12-0821-01A-01W-0424-08	105	101	4	73	3.809524e-02	0	coding only	34834024	27	71	7.751042e-07	2.038237e-06
TCGA-12-1597-01B-01D-1495-08	93	90	3	71	3.225806e-02	0	coding only	34834024	18	62	5.167362e-07	1.779869e-06
TCGA-12-3649-01A-01D-1495-08	101	99	2	81	1.980198e-02	0	coding only	34834024	17	74	4.880286e-07	2.124360e-06
TCGA-12-3650-01A-01D-1495-08	68	66	2	50	2.941176e-02	0	coding only	34834024	16	48	4.593210e-07	1.377963e-06
TCGA-12-3652-01A-01D-1495-08	76	74	2	54	2.631579e-02	0	coding only	34834024	20	53	5.741513e-07	1.521501e-06
TCGA-12-3653-01A-01D-1495-08	45	43	2	35	4.444444e-02	0	coding only	34834024	7	32	2.009530e-07	9.186421e-07
TCGA-12-5295-01A-01D-1486-08	94	92	2	70	2.127660e-02	0	coding only	34834024	20	68	5.741513e-07	1.952114e-06
TCGA-12-5299-01A-02D-1486-08	52	50	2	35	3.846154e-02	0	coding only	34834024	14	35	4.019059e-07	1.004765e-06
TCGA-12-5301-01A-01D-1486-08	89	88	1	63	1.123596e-02	0	coding only	34834024	22	55	6.315664e-07	1.578916e-06
TCGA-14-0740-01B-01D-1845-08	61	58	3	43	4.918033e-02	0	coding only	34834024	15	42	4.306135e-07	1.205718e-06
TCGA-14-0781-01B-01D-1696-08	43	42	1	34	2.325581e-02	0	coding only	34834024	6	33	1.722454e-07	9.473496e-07
TCGA-14-0786-01B-01D-1492-08	55	50	5	38	9.090909e-02	0	coding only	34834024	12	36	3.444908e-07	1.033472e-06
TCGA-14-0787-01A-01W-0424-08	47	45	2	31	4.255319e-02	0	coding only	34834024	13	29	3.731983e-07	8.325194e-07
TCGA-14-0789-01A-01W-0424-08	89	86	3	60	3.370787e-02	0	coding only	34834024	25	60	7.176891e-07	1.722454e-06
TCGA-14-0790-01B-01D-1494-08	80	78	2	58	2.500000e-02	0	coding only	34834024	17	56	4.880286e-07	1.607624e-06
TCGA-14-0813-01A-01W-0424-08	119	115	4	85	3.361345e-02	0	coding only	34834024	29	78	8.325194e-07	2.239190e-06
TCGA-14-0817-01A-01W-0424-08	90	87	3	70	3.333333e-02	0	coding only	34834024	17	66	4.880286e-07	1.894699e-06
TCGA-14-0862-01B-01D-1845-08	52	51	1	38	1.923077e-02	0	coding only	34834024	13	37	3.731983e-07	1.062180e-06
TCGA-14-0871-01A-01W-0424-08	69	67	2	56	2.898551e-02	0	coding only	34834024	9	55	2.583681e-07	1.578916e-06
TCGA-14-1043-01B-11D-1845-08	29	26	3	18	1.034483e-01	0	coding only	34834024	7	18	2.009530e-07	5.167362e-07
TCGA-14-1395-01B-11D-1845-08	66	66	0	50	0	0	coding only	34834024	14	47	4.019059e-07	1.349256e-06
TCGA-14-1450-01B-01D-1845-08	73	71	2	54	2.739726e-02	0	coding only	34834024	14	49	4.019059e-07	1.406671e-06
TCGA-14-1456-01B-01D-1494-08	33	32	1	26	3.030303e-02	0	coding only	34834024	5	26	1.435378e-07	7.463967e-07
TCGA-14-1823-01A-01W-0643-08	66	63	3	52	4.545455e-02	0	coding only	34834024	11	48	3.157832e-07	1.377963e-06
TCGA-14-1825-01A-01W-0643-08	64	61	3	47	4.687500e-02	0	coding only	34834024	12	42	3.444908e-07	1.205718e-06
TCGA-14-1829-01A-01W-0643-08	66	64	2	46	3.030303e-02	0	coding only	34834024	17	44	4.880286e-07	1.263133e-06
TCGA-14-2554-01A-01D-1494-08	84	82	2	62	2.380952e-02	0	coding only	34834024	19	58	5.454437e-07	1.665039e-06
TCGA-14-3476-01B-01D-1353-08	101	98	3	74	2.970297e-02	0	coding only	34834024	24	72	6.889816e-07	2.066945e-06
TCGA-14-4157-01A-01D-1353-08	73	70	3	58	4.109589e-02	0	coding only	34834024	11	54	3.157832e-07	1.550208e-06
TCGA-15-0742-01A-01W-0348-08	87	85	2	71	2.298851e-02	0	coding only	34834024	13	69	3.731983e-07	1.980822e-06
TCGA-15-1444-01A-02D-1696-08	24	23	1	16	4.166667e-02	0	coding only	34834024	7	15	2.009530e-07	4.306135e-07
TCGA-16-0846-01A-01W-0424-08	86	84	2	62	2.325581e-02	0	coding only	34834024	21	60	6.028589e-07	1.722454e-06
TCGA-16-0861-01A-01W-0424-08	76	75	1	59	1.315789e-02	0	coding only	34834024	15	57	4.306135e-07	1.636331e-06
TCGA-16-1045-01B-01W-0611-08	118	117	1	83	8.474576e-03	0	coding only	34834024	33	81	9.473496e-07	2.325313e-06
TCGA-16-1048-01B-01D-1353-08	104	101	3	77	2.884615e-02	0	coding only	34834024	24	72	6.889816e-07	2.066945e-06
TCGA-19-1390-01A-01D-1495-08	141	140	1	102	7.092199e-03	0	coding only	34834024	35	94	1.004765e-06	2.698511e-06
TCGA-19-1790-01B-01D-1353-08	191	188	3	145	1.570681e-02	0	coding only	34834024	39	139	1.119595e-06	3.990352e-06
TCGA-19-2619-01A-01D-1495-08	65	65	0	42	0	0	coding only	34834024	22	39	6.315664e-07	1.119595e-06
TCGA-19-2620-01A-01D-1495-08	89	89	0	67	0	0	coding only	34834024	21	66	6.028589e-07	1.894699e-06
TCGA-19-2623-01A-01D-1495-08	114	111	3	80	2.631579e-02	0	coding only	34834024	28	76	8.038118e-07	2.181775e-06
TCGA-19-2624-01A-01D-1495-08	58	56	2	44	3.448276e-02	0	coding only	34834024	11	41	3.157832e-07	1.177010e-06
TCGA-19-2625-01A-01D-1495-08	71	68	3	56	4.225352e-02	0	coding only	34834024	10	54	2.870756e-07	1.550208e-06
TCGA-19-2629-01A-01D-1495-08	124	118	6	96	4.838710e-02	1	exome+100bp flanks	34834024	22	93	6.315664e-07	2.669804e-06
TCGA-19-2631-01A-01D-1353-08	125	123	2	103	1.600000e-02	0	coding only	34834024	18	96	5.167362e-07	2.755926e-06
TCGA-19-4068-01A-01D-1353-08	87	83	4	52	4.597701e-02	0	coding only	34834024	29	51	8.325194e-07	1.464086e-06
TCGA-19-5947-01A-11D-1696-08	30	30	0	26	0	0	coding only	34834024	4	25	1.148303e-07	7.176891e-07
TCGA-19-5950-01A-11D-1696-08	65	64	1	52	1.538462e-02	0	coding only	34834024	11	52	3.157832e-07	1.492793e-06
TCGA-19-5951-01A-11D-1696-08	93	90	3	66	3.225806e-02	0	coding only	34834024	23	61	6.602740e-07	1.751161e-06
TCGA-19-5952-01A-11D-1696-08	52	51	1	38	1.923077e-02	0	coding only	34834024	13	36	3.731983e-07	1.033472e-06
TCGA-19-5953-01B-12D-1845-08	75	73	2	49	2.666667e-02	0	coding only	34834024	23	46	6.602740e-07	1.320548e-06
TCGA-19-5954-01A-11D-1696-08	92	91	1	70	1.086957e-02	0	coding only	34834024	21	67	6.028589e-07	1.923407e-06
TCGA-19-5955-01A-11D-1696-08	101	98	3	61	2.970297e-02	0	coding only	34834024	37	56	1.062180e-06	1.607624e-06
TCGA-19-5958-01A-11D-1696-08	53	51	2	38	3.773585e-02	0	coding only	34834024	12	34	3.444908e-07	9.760572e-07
TCGA-19-5959-01A-11D-1696-08	104	103	1	75	9.615385e-03	0	coding only	34834024	26	71	7.463967e-07	2.038237e-06
TCGA-19-5960-01A-11D-1696-08	51	51	0	43	0	0	coding only	34834024	8	43	2.296605e-07	1.234425e-06
TCGA-26-1439-01A-01D-1353-08	62	60	2	42	3.225806e-02	0	coding only	34834024	16	37	4.593210e-07	1.062180e-06
TCGA-26-1442-01A-01D-1696-08	60	59	1	43	1.666667e-02	0	coding only	34834024	15	39	4.306135e-07	1.119595e-06
TCGA-26-5132-01A-01D-1486-08	58	56	2	46	3.448276e-02	0	coding only	34834024	10	45	2.870756e-07	1.291840e-06
TCGA-26-5133-01A-01D-1486-08	67	66	1	47	1.492537e-02	0	coding only	34834024	18	41	5.167362e-07	1.177010e-06
TCGA-26-5134-01A-01D-1486-08	65	62	3	48	4.615385e-02	0	coding only	34834024	14	44	4.019059e-07	1.263133e-06
TCGA-26-5135-01A-01D-1486-08	78	78	0	53	0	0	coding only	34834024	23	51	6.602740e-07	1.464086e-06
TCGA-26-5136-01B-01D-1486-08	68	66	2	50	2.941176e-02	0	coding only	34834024	16	47	4.593210e-07	1.349256e-06
TCGA-26-5139-01A-01D-1486-08	62	58	4	37	6.451613e-02	0	coding only	34834024	20	35	5.741513e-07	1.004765e-06
TCGA-26-6173-01A-11D-1845-08	46	46	0	33	0	0	coding only	34834024	13	32	3.731983e-07	9.186421e-07
TCGA-26-6174-01A-21D-1845-08	103	102	1	84	9.708738e-03	0	coding only	34834024	16	81	4.593210e-07	2.325313e-06
TCGA-27-1830-01A-01W-0643-08	64	63	1	47	1.562500e-02	0	coding only	34834024	14	46	4.019059e-07	1.320548e-06
TCGA-27-1831-01A-01D-1494-08	73	73	0	62	0	0	coding only	34834024	10	60	2.870756e-07	1.722454e-06
TCGA-27-1832-01A-01W-0643-08	47	45	2	34	4.255319e-02	0	coding only	34834024	11	32	3.157832e-07	9.186421e-07
TCGA-27-1833-01A-01W-0643-08	77	68	9	50	1.168831e-01	0	coding only	34834024	18	48	5.167362e-07	1.377963e-06
TCGA-27-1834-01A-01W-0643-08	71	69	2	49	2.816901e-02	0	coding only	34834024	20	47	5.741513e-07	1.349256e-06
TCGA-27-1835-01A-01D-1494-08	79	77	2	62	2.531646e-02	0	coding only	34834024	12	61	3.444908e-07	1.751161e-06
TCGA-27-1836-01A-01D-1494-08	54	54	0	40	0	0	coding only	34834024	13	37	3.731983e-07	1.062180e-06
TCGA-27-1837-01A-01D-1494-08	44	43	1	34	2.272727e-02	0	coding only	34834024	9	31	2.583681e-07	8.899345e-07
TCGA-27-1838-01A-01D-1494-08	119	115	4	93	3.361345e-02	0	coding only	34834024	22	88	6.315664e-07	2.526266e-06
TCGA-27-2518-01A-01D-1494-08	64	62	2	37	3.125000e-02	0	coding only	34834024	24	37	6.889816e-07	1.062180e-06
TCGA-27-2519-01A-01D-1494-08	55	55	0	49	0	0	coding only	34834024	6	47	1.722454e-07	1.349256e-06
TCGA-27-2521-01A-01D-1494-08	86	85	1	63	1.162791e-02	0	coding only	34834024	22	59	6.315664e-07	1.693746e-06
TCGA-27-2523-01A-01D-1494-08	66	64	2	53	3.030303e-02	0	coding only	34834024	11	50	3.157832e-07	1.435378e-06
TCGA-27-2524-01A-01D-1494-08	75	72	3	53	4.000000e-02	0	coding only	34834024	17	50	4.880286e-07	1.435378e-06
TCGA-27-2526-01A-01D-1494-08	57	57	0	44	0	0	coding only	34834024	12	41	3.444908e-07	1.177010e-06
TCGA-27-2527-01A-01D-1494-08	82	79	3	64	3.658537e-02	0	coding only	34834024	15	61	4.306135e-07	1.751161e-06
TCGA-27-2528-01A-01D-1494-08	58	58	0	48	0	0	coding only	34834024	10	47	2.870756e-07	1.349256e-06
TCGA-28-1747-01C-01D-1494-08	54	51	3	42	5.555556e-02	0	coding only	34834024	9	40	2.583681e-07	1.148303e-06
TCGA-28-1753-01A-01D-1494-08	67	64	3	48	4.477612e-02	0	coding only	34834024	16	46	4.593210e-07	1.320548e-06
TCGA-28-2499-01A-01D-1494-08	35	34	1	30	2.857143e-02	0	coding only	34834024	4	29	1.148303e-07	8.325194e-07
TCGA-28-2501-01A-01D-1696-08	61	60	1	43	1.639344e-02	0	coding only	34834024	15	42	4.306135e-07	1.205718e-06
TCGA-28-2502-01B-01D-1494-08	71	69	2	50	2.816901e-02	0	coding only	34834024	18	49	5.167362e-07	1.406671e-06
TCGA-28-2509-01A-01D-1494-08	71	71	0	54	0	0	coding only	34834024	15	51	4.306135e-07	1.464086e-06
TCGA-28-2510-01A-01D-1696-08	34	33	1	25	2.941176e-02	0	coding only	34834024	8	24	2.296605e-07	6.889816e-07
TCGA-28-2513-01A-01D-1494-08	96	93	3	80	3.125000e-02	0	coding only	34834024	13	78	3.731983e-07	2.239190e-06
TCGA-28-2514-01A-02D-1494-08	58	57	1	45	1.724138e-02	0	coding only	34834024	12	43	3.444908e-07	1.234425e-06
TCGA-28-5204-01A-01D-1486-08	52	50	2	42	3.846154e-02	0	coding only	34834024	8	42	2.296605e-07	1.205718e-06
TCGA-28-5207-01A-01D-1486-08	71	70	1	52	1.408451e-02	0	coding only	34834024	18	49	5.167362e-07	1.406671e-06
TCGA-28-5208-01A-01D-1486-08	74	74	0	60	0	0	coding only	34834024	13	57	3.731983e-07	1.636331e-06
TCGA-28-5209-01A-01D-1486-08	117	116	1	92	8.547009e-03	0	coding only	34834024	23	92	6.602740e-07	2.641096e-06
TCGA-28-5211-01C-11D-1845-08	45	44	1	35	2.222222e-02	0	coding only	34834024	8	33	2.296605e-07	9.473496e-07
TCGA-28-5213-01A-01D-1486-08	65	65	0	47	0	0	coding only	34834024	17	44	4.880286e-07	1.263133e-06
TCGA-28-5214-01A-01D-1486-08	61	58	3	39	4.918033e-02	0	coding only	34834024	19	36	5.454437e-07	1.033472e-06
TCGA-28-5215-01A-01D-1486-08	47	46	1	32	2.127660e-02	0	coding only	34834024	14	30	4.019059e-07	8.612269e-07
TCGA-28-5216-01A-01D-1486-08	62	59	3	43	4.838710e-02	0	coding only	34834024	16	39	4.593210e-07	1.119595e-06
TCGA-28-5218-01A-01D-1486-08	34	34	0	29	0	0	coding only	34834024	5	29	1.435378e-07	8.325194e-07
TCGA-28-5219-01A-01D-1486-08	65	64	1	52	1.538462e-02	0	coding only	34834024	12	49	3.444908e-07	1.406671e-06
TCGA-28-5220-01A-01D-1486-08	50	50	0	40	0	0	coding only	34834024	10	38	2.870756e-07	1.090887e-06
TCGA-28-6450-01A-11D-1696-08	68	67	1	56	1.470588e-02	0	coding only	34834024	11	54	3.157832e-07	1.550208e-06
TCGA-32-1970-01A-01D-1494-08	100	96	4	74	4.000000e-02	0	coding only	34834024	21	69	6.028589e-07	1.980822e-06
TCGA-32-1977-01A-01D-1353-08	116	115	1	84	8.620690e-03	0	coding only	34834024	31	82	8.899345e-07	2.354020e-06
TCGA-32-1979-01A-01D-1696-08	101	99	2	72	1.980198e-02	0	coding only	34834024	25	70	7.176891e-07	2.009530e-06
TCGA-32-1980-01A-01D-1696-08	22	20	2	17	9.090909e-02	0	coding only	34834024	3	16	8.612269e-08	4.593210e-07
TCGA-32-1982-01A-01D-1494-08	99	95	4	67	4.040404e-02	0	coding only	34834024	27	65	7.751042e-07	1.865992e-06
TCGA-32-1986-01A-01D-1494-08	63	63	0	49	0	0	coding only	34834024	13	47	3.731983e-07	1.349256e-06
TCGA-32-1991-01A-01D-1353-08	83	79	4	59	4.819277e-02	0	coding only	34834024	18	54	5.167362e-07	1.550208e-06
TCGA-32-2491-01A-01D-1353-08	129	126	3	100	2.325581e-02	0	coding only	34834024	25	94	7.176891e-07	2.698511e-06
TCGA-32-2494-01A-01D-1353-08	96	93	3	71	3.125000e-02	0	coding only	34834024	22	70	6.315664e-07	2.009530e-06
TCGA-32-2495-01A-01D-1353-08	118	115	3	87	2.542373e-02	0	coding only	34834024	26	84	7.463967e-07	2.411435e-06
TCGA-32-2615-01A-01D-1495-08	52	52	0	35	0	0	coding only	34834024	15	32	4.306135e-07	9.186421e-07
TCGA-32-2632-01A-01D-1495-08	121	118	3	92	2.479339e-02	0	coding only	34834024	22	87	6.315664e-07	2.497558e-06
TCGA-32-2634-01A-01D-1495-08	59	58	1	46	1.694915e-02	0	coding only	34834024	11	44	3.157832e-07	1.263133e-06
TCGA-32-2638-01A-01D-1495-08	75	74	1	48	1.333333e-02	0	coding only	34834024	26	45	7.463967e-07	1.291840e-06
TCGA-32-4208-01A-01D-1353-08	83	80	3	70	3.614458e-02	0	coding only	34834024	9	68	2.583681e-07	1.952114e-06
TCGA-32-4209-01A-01D-1353-08	50	48	2	40	4.000000e-02	0	coding only	34834024	8	36	2.296605e-07	1.033472e-06
TCGA-32-4210-01A-01D-1353-08	123	120	3	87	2.439024e-02	0	coding only	34834024	32	82	9.186421e-07	2.354020e-06
TCGA-32-4211-01A-01D-1353-08	111	110	1	88	9.009009e-03	0	coding only	34834024	22	85	6.315664e-07	2.440143e-06
TCGA-32-4213-01A-01D-1353-08	90	90	0	66	0	0	coding only	34834024	22	62	6.315664e-07	1.779869e-06
TCGA-32-4719-01A-01D-1353-08	59	56	3	44	5.084746e-02	0	coding only	34834024	11	43	3.157832e-07	1.234425e-06
TCGA-32-5222-01A-01D-1486-08	100	99	1	72	1.000000e-02	0	coding only	34834024	25	70	7.176891e-07	2.009530e-06
TCGA-41-2571-01A-01D-1495-08	66	65	1	47	1.515152e-02	0	coding only	34834024	16	42	4.593210e-07	1.205718e-06
TCGA-41-2572-01A-01D-1353-08	83	81	2	55	2.409639e-02	0	coding only	34834024	25	52	7.176891e-07	1.492793e-06
TCGA-41-2573-01A-01D-1495-08	58	55	3	43	5.172414e-02	0	coding only	34834024	11	39	3.157832e-07	1.119595e-06
TCGA-41-2575-01A-01D-1495-08	80	77	3	61	3.750000e-02	0	coding only	34834024	16	56	4.593210e-07	1.607624e-06
TCGA-41-3392-01A-01D-1495-08	89	86	3	68	3.370787e-02	0	coding only	34834024	17	67	4.880286e-07	1.923407e-06
TCGA-41-3393-01A-01D-1353-08	95	93	2	73	2.105263e-02	0	coding only	34834024	18	68	5.167362e-07	1.952114e-06
TCGA-41-3915-01A-01D-1353-08	71	69	2	53	2.816901e-02	0	coding only	34834024	15	47	4.306135e-07	1.349256e-06
TCGA-41-4097-01A-01D-1353-08	87	85	2	67	2.298851e-02	0	coding only	34834024	18	63	5.167362e-07	1.808577e-06
TCGA-41-5651-01A-01D-1696-08	113	110	3	75	2.654867e-02	0	coding only	34834024	33	67	9.473496e-07	1.923407e-06
TCGA-41-6646-01A-11D-1845-08	60	56	4	49	6.666667e-02	0	coding only	34834024	7	45	2.009530e-07	1.291840e-06
TCGA-74-6573-01A-12D-1845-08	59	58	1	45	1.694915e-02	0	coding only	34834024	13	41	3.731983e-07	1.177010e-06
TCGA-74-6575-01A-11D-1845-08	126	123	3	90	2.380952e-02	0	coding only	34834024	32	84	9.186421e-07	2.411435e-06
TCGA-74-6577-01A-11D-1845-08	51	49	2	40	3.921569e-02	0	coding only	34834024	9	38	2.583681e-07	1.090887e-06
TCGA-74-6578-01A-11D-1845-08	91	89	2	67	2.197802e-02	0	coding only	34834024	21	64	6.028589e-07	1.837284e-06
TCGA-74-6584-01A-11D-1845-08	47	47	0	34	0	0	coding only	34834024	12	31	3.444908e-07	8.899345e-07
TCGA-76-4925-01A-01D-1486-08	79	77	2	58	2.531646e-02	0	coding only	34834024	18	52	5.167362e-07	1.492793e-06
TCGA-76-4926-01B-01D-1486-08	74	71	3	56	4.054054e-02	0	coding only	34834024	15	54	4.306135e-07	1.550208e-06
TCGA-76-4927-01A-01D-1486-08	71	69	2	50	2.816901e-02	0	coding only	34834024	18	47	5.167362e-07	1.349256e-06
TCGA-76-4928-01B-01D-1486-08	98	94	4	73	4.081633e-02	0	coding only	34834024	20	71	5.741513e-07	2.038237e-06
TCGA-76-4929-01A-01D-1486-08	77	76	1	50	1.298701e-02	0	coding only	34834024	26	47	7.463967e-07	1.349256e-06
TCGA-76-4931-01A-01D-1486-08	57	55	2	36	3.508772e-02	0	coding only	34834024	19	34	5.454437e-07	9.760572e-07
TCGA-76-4932-01A-01D-1486-08	81	79	2	59	2.469136e-02	0	coding only	34834024	18	57	5.167362e-07	1.636331e-06
TCGA-76-4934-01A-01D-1486-08	71	68	3	54	4.225352e-02	0	coding only	34834024	13	52	3.731983e-07	1.492793e-06
TCGA-76-4935-01A-01D-1486-08	72	71	1	56	1.388889e-02	0	coding only	34834024	13	54	3.731983e-07	1.550208e-06
TCGA-76-6191-01A-12D-1696-08	67	66	1	49	1.492537e-02	0	coding only	34834024	16	48	4.593210e-07	1.377963e-06
TCGA-76-6192-01A-11D-1696-08	67	67	0	48	0	0	coding only	34834024	16	45	4.593210e-07	1.291840e-06
TCGA-76-6193-01A-11D-1696-08	56	56	0	41	0	0	coding only	34834024	13	40	3.731983e-07	1.148303e-06
TCGA-76-6280-01A-21D-1845-08	70	68	2	55	2.857143e-02	0	coding only	34834024	12	54	3.444908e-07	1.550208e-06
TCGA-76-6282-01A-11D-1696-08	60	59	1	48	1.666667e-02	0	coding only	34834024	10	47	2.870756e-07	1.349256e-06
TCGA-76-6283-01A-11D-1845-08	116	114	2	88	1.724138e-02	0	coding only	34834024	25	84	7.176891e-07	2.411435e-06
TCGA-76-6285-01A-11D-1696-08	68	66	2	47	2.941176e-02	0	coding only	34834024	19	41	5.454437e-07	1.177010e-06
TCGA-76-6286-01A-11D-1845-08	85	82	3	57	3.529412e-02	0	coding only	34834024	24	54	6.889816e-07	1.550208e-06
TCGA-76-6656-01A-11D-1845-08	114	112	2	83	1.754386e-02	0	coding only	34834024	28	77	8.038118e-07	2.210482e-06
TCGA-76-6657-01A-11D-1845-08	69	69	0	56	0	0	coding only	34834024	13	53	3.731983e-07	1.521501e-06
TCGA-76-6660-01A-11D-1845-08	103	99	4	72	3.883495e-02	0	coding only	34834024	27	72	7.751042e-07	2.066945e-06
TCGA-76-6661-01B-11D-1845-08	69	66	3	50	4.347826e-02	0	coding only	34834024	16	50	4.593210e-07	1.435378e-06
TCGA-76-6662-01A-11D-1845-08	50	48	2	39	4.000000e-02	0	coding only	34834024	8	36	2.296605e-07	1.033472e-06
TCGA-76-6663-01A-11D-1845-08	73	73	0	53	0	0	coding only	34834024	19	51	5.454437e-07	1.464086e-06
TCGA-76-6664-01A-11D-1845-08	66	64	2	47	3.030303e-02	0	coding only	34834024	16	45	4.593210e-07	1.291840e-06
TCGA-81-5910-01A-11D-1696-08	60	59	1	45	1.666667e-02	0	coding only	34834024	14	43	4.019059e-07	1.234425e-06
TCGA-81-5911-01A-12D-1845-08	37	36	1	30	2.702703e-02	0	coding only	34834024	6	28	1.722454e-07	8.038118e-07
TCGA-87-5896-01A-01D-1696-08	66	65	1	40	1.515152e-02	0	coding only	34834024	22	37	6.315664e-07	1.062180e-06