Clinical Features Time to Death YEARS_TO_BIRTH TUMOR_TISSUE_SITE GENDER RADIATION_THERAPY KARNOFSKY_PERFORMANCE_SCORE HISTOLOGICAL_TYPE RACE ETHNICITY nCNV (%) nWild-Type logrank test_P logrank test_Q Wilcoxon-test_P Wilcoxon-test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Wilcoxon-test_P Wilcoxon-test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q amp_1p36.21 104 (10%) 981 1.2002e-13 1.21e-12 2.1958e-08 1.36e-07 5.7698e-16 7.35e-15 0.46564 0.607 0.052173 0.103 0.0015311 0.00461 9.9999e-06 3.86e-05 0.3758 0.524 0.79064 0.878 amp_1q22 144 (13%) 941 0.018897 0.0424 0.0010526 0.00323 2.7104e-06 1.44e-05 0.31832 0.461 0.17135 0.284 0.034715 0.0717 5.9999e-05 0.000213 0.34293 0.489 0.10705 0.188 amp_1q32.1 204 (19%) 881 7.8937e-13 7.4e-12 2.5939e-13 2.54e-12 3.4281e-16 4.54e-15 0.75315 0.85 0.017135 0.0391 0.00011355 0.000385 9.9999e-06 3.86e-05 0.39042 0.54 0.014656 0.034 amp_1q44 129 (12%) 956 2.629e-06 1.41e-05 3.2813e-06 1.7e-05 3.3418e-09 2.13e-08 0.25458 0.393 0.12305 0.213 0.0019134 0.00559 9.9999e-06 3.86e-05 0.41381 0.56 0.80935 0.889 amp_2p24.3 72 (7%) 1013 0.092756 0.168 0.70516 0.809 0.0072432 0.0184 0.53659 0.668 0.31044 0.454 0.39064 0.54 0.068899 0.131 0.82344 0.895 0.75734 0.853 amp_3q26.33 130 (12%) 955 1.4433e-15 1.77e-14 5.1977e-10 3.69e-09 4.8665e-15 5.66e-14 0.34383 0.489 0.18682 0.308 0.00041043 0.00132 9.9999e-06 3.86e-05 0.3444 0.489 0.077359 0.145 amp_4p16.3 69 (6%) 1016 0.010007 0.0242 0.034101 0.0708 0.0040489 0.011 0.45022 0.591 0.027203 0.0576 0.56896 0.691 0.04088 0.0826 0.48897 0.622 1 1 amp_4q12 138 (13%) 947 6.983e-10 4.86e-09 5.2902e-06 2.68e-05 7.1207e-11 5.79e-10 0.16681 0.278 0.085909 0.157 0.054727 0.107 9.9999e-06 3.86e-05 0.47036 0.608 0.34976 0.494 amp_5p15.33 76 (7%) 1009 0.00077689 0.00241 0.038826 0.0792 1.2767e-06 6.95e-06 0.46985 0.608 0.11818 0.205 0.84137 0.906 9.9999e-06 3.86e-05 0.2721 0.415 1 1 amp_7p11.2 630 (58%) 455 0 0 2.8e-69 7.56e-68 3.1601e-105 1.12e-103 0.31905 0.461 6.0941e-14 6.33e-13 9.9071e-20 1.59e-18 9.9999e-06 3.86e-05 0.0053599 0.014 0.0077171 0.0194 amp_7q11.21 577 (53%) 508 0 0 7.2617e-56 1.69e-54 2.6968e-85 8.67e-84 0.35485 0.5 4.1184e-11 3.43e-10 3.8882e-14 4.23e-13 9.9999e-06 3.86e-05 0.00277 0.00782 0.0082931 0.0205 amp_7q21.2 631 (58%) 454 0 0 9.6627e-51 2.17e-49 1.3608e-72 4.18e-71 0.80292 0.885 1.2865e-11 1.09e-10 1.6357e-12 1.49e-11 9.9999e-06 3.86e-05 0.00147 0.00445 0.0026468 0.00751 amp_7q31.2 641 (59%) 444 0 0 1.2688e-40 2.52e-39 1.1246e-59 2.81e-58 0.85119 0.912 1.0492e-09 7.23e-09 1.5414e-09 1.05e-08 9.9999e-06 3.86e-05 0.0079599 0.0199 0.0028587 0.00804 amp_7q32.3 654 (60%) 431 0 0 3.0842e-41 6.31e-40 9.5053e-59 2.29e-57 0.75316 0.85 1.1891e-10 9.33e-10 2.2188e-09 1.47e-08 9.9999e-06 3.86e-05 0.0059999 0.0155 0.0015396 0.00462 amp_8q24.21 169 (16%) 916 0.00089675 0.00276 6.6537e-05 0.000235 0.00077349 0.00241 0.79975 0.884 0.42462 0.565 0.19757 0.319 0.00063999 0.00201 0.44672 0.59 0.20306 0.326 amp_9q34.3 141 (13%) 944 0.038808 0.0792 0.026517 0.057 0.00019904 0.000655 0.067468 0.129 0.085909 0.157 0.074706 0.141 0.00048 0.00153 0.25137 0.391 0.81845 0.894 amp_10p15.1 88 (8%) 997 4.737e-07 2.64e-06 3.9438e-15 4.67e-14 5.8328e-10 4.1e-09 0.73602 0.838 1 1 0.00076151 0.00238 9.9999e-06 3.86e-05 1 1 0.084275 0.156 amp_11p13 59 (5%) 1026 0.645 0.755 0.9179 0.968 0.78954 0.878 0.41564 0.56 0.43837 0.581 0.41341 0.56 0.12438 0.215 0.92601 0.968 0.30914 0.453 amp_11q24.1 112 (10%) 973 1.6778e-06 9.06e-06 0.00044554 0.00143 5.4133e-12 4.68e-11 0.83986 0.906 0.16198 0.271 0.010907 0.0261 9.9999e-06 3.86e-05 0.28844 0.434 0.44992 0.591 amp_12p13.32 152 (14%) 933 0.81021 0.889 0.026816 0.0573 0.54034 0.67 0.28723 0.434 0.009731 0.0236 0.87524 0.93 0.30753 0.452 0.7417 0.843 0.82316 0.895 amp_12q14.1 171 (16%) 914 5.6621e-15 6.48e-14 9.7023e-06 3.86e-05 7.8608e-14 8.04e-13 0.67334 0.781 0.010417 0.025 0.13044 0.225 9.9999e-06 3.86e-05 0.31566 0.459 0.033682 0.0702 amp_12q15 111 (10%) 974 1.7016e-10 1.31e-09 3.1956e-05 0.000117 8.8836e-13 8.21e-12 0.15501 0.262 0.04426 0.0887 0.025148 0.0546 9.9999e-06 3.86e-05 0.36236 0.509 0.017385 0.0395 amp_13q34 54 (5%) 1031 0.54935 0.676 0.99021 1 0.40174 0.548 0.39587 0.543 1 1 0.085551 0.157 0.58661 0.703 0.77759 0.87 1 1 amp_14q32.33 44 (4%) 1041 0.0017884 0.00528 9.5714e-06 3.86e-05 7.5858e-05 0.000264 0.21198 0.338 0.064313 0.124 0.09004 0.164 0.00226 0.00652 1 1 0.25386 0.393 amp_17p13.2 74 (7%) 1011 0.0029323 0.00819 0.011453 0.0271 0.0052226 0.0137 0.06642 0.127 0.5749 0.693 0.78697 0.877 0.0050999 0.0134 0.48875 0.622 0.76247 0.855 amp_17q25.1 127 (12%) 958 5.1288e-06 2.62e-05 1.311e-05 4.92e-05 0.0017147 0.0051 0.08577 0.157 1 1 0.79397 0.88 0.0154 0.0356 0.72116 0.825 0.62795 0.74 amp_19p13.3 373 (34%) 712 0.010382 0.025 4.6549e-05 0.000168 1.5952e-09 1.08e-08 0.39987 0.546 0.76285 0.855 0.95618 0.991 9.9999e-06 3.86e-05 0.35662 0.501 0.52053 0.657 amp_19q12 246 (23%) 839 0 0 3.6799e-16 4.78e-15 1.9303e-38 3.62e-37 0.41929 0.561 1.0402e-07 6.16e-07 7.0502e-05 0.000247 9.9999e-06 3.86e-05 0.04044 0.0821 0.58177 0.699 amp_19q13.2 230 (21%) 855 0 0 2.8608e-15 3.45e-14 2.1083e-33 3.74e-32 0.40746 0.554 6.0476e-07 3.35e-06 0.00051132 0.00162 9.9999e-06 3.86e-05 0.03358 0.0702 0.56683 0.69 amp_xp11.21 104 (10%) 981 9.9735e-05 0.000341 2.9052e-06 1.52e-05 1.8586e-05 6.93e-05 0.028429 0.06 0.0096595 0.0235 0.023905 0.0527 9.9999e-06 3.86e-05 0.56751 0.69 0.030301 0.0637 del_1p36.32 315 (29%) 770 7.085e-09 4.43e-08 0.58189 0.699 1.4416e-14 1.62e-13 0.58752 0.703 6.2009e-08 3.74e-07 0.02723 0.0576 9.9999e-06 3.86e-05 0.02168 0.0481 0.73601 0.838 del_1p36.23 344 (32%) 741 1.2884e-05 4.87e-05 0.1825 0.301 8.5227e-11 6.78e-10 0.46749 0.608 2.9741e-07 1.7e-06 0.0025217 0.00718 9.9999e-06 3.86e-05 0.099559 0.177 1 1 del_1p32.3 257 (24%) 828 3.1941e-13 3.08e-12 0.23236 0.369 2.5043e-27 4.12e-26 1 1 3.3073e-13 3.14e-12 0.002172 0.00629 9.9999e-06 3.86e-05 0.03605 0.0742 0.27943 0.424 del_1p22.1 234 (22%) 851 0 0 0.0047871 0.0128 6.1921e-30 1.04e-28 0.54952 0.676 4.4029e-14 4.72e-13 0.00018346 0.000607 9.9999e-06 3.86e-05 0.41986 0.561 0.13968 0.239 del_1q42.11 78 (7%) 1007 0.018074 0.0407 0.024024 0.0528 0.044971 0.0895 0.63382 0.744 0.48016 0.616 0.0091245 0.0224 0.31121 0.454 0.21172 0.338 0.7627 0.855 del_1q44 69 (6%) 1016 0.54542 0.674 0.64162 0.752 0.8034 0.885 0.45022 0.591 0.55667 0.683 0.86012 0.919 0.84764 0.91 0.9311 0.968 1 1 del_2q22.1 68 (6%) 1017 0.0035471 0.00973 0.017911 0.0404 0.0056398 0.0147 0.89937 0.953 0.2967 0.442 0.083388 0.155 0.00489 0.013 0.34485 0.489 0.10492 0.185 del_2q37.1 121 (11%) 964 0.47164 0.609 0.026513 0.057 0.10029 0.177 0.49554 0.629 0.29843 0.443 0.47501 0.612 0.0060099 0.0155 0.38902 0.54 1 1 del_3p21.31 109 (10%) 976 0.86619 0.924 0.23553 0.373 1 1 0.91882 0.968 0.0012095 0.00369 0.24173 0.38 0.59321 0.709 0.78059 0.872 0.20309 0.326 del_3q13.31 95 (9%) 990 0.079769 0.149 0.72259 0.825 0.23689 0.374 1 1 0.072404 0.137 0.45213 0.593 0.68336 0.788 0.48081 0.616 1 1 del_3q29 107 (10%) 978 0.29146 0.436 0.91425 0.966 0.41467 0.56 0.60701 0.723 0.33544 0.482 0.18095 0.299 0.5103 0.645 0.87867 0.933 0.6085 0.723 del_4q34.3 230 (21%) 855 0.00011807 0.000398 0.017515 0.0397 2.8934e-05 0.000106 0.098267 0.175 0.25102 0.391 0.24548 0.385 0.00164 0.0049 0.54983 0.676 0.34623 0.49 del_5p15.33 106 (10%) 979 0.3937 0.542 0.62735 0.74 1 1 0.67913 0.786 0.00038056 0.00123 0.29615 0.442 0.02586 0.0559 0.7431 0.843 1 1 del_5q34 132 (12%) 953 0.36625 0.513 0.087788 0.16 0.92602 0.968 0.15766 0.265 0.0017927 0.00528 0.5236 0.659 0.00021 0.000688 0.69765 0.802 1 1 del_6p25.3 138 (13%) 947 7.9864e-08 4.77e-07 0.037602 0.0771 0.0061318 0.0157 0.92667 0.968 0.5098 0.645 0.14433 0.245 0.056989 0.111 0.19787 0.319 0.48894 0.622 del_6q22.31 239 (22%) 846 2.9704e-12 2.67e-11 1.2213e-05 4.66e-05 1.61e-07 9.37e-07 0.13764 0.236 0.023316 0.0516 0.0085495 0.0211 9.9999e-06 3.86e-05 0.11643 0.204 0.094687 0.17 del_6q26 260 (24%) 825 5.748e-12 4.91e-11 0.0001198 0.000402 2.6614e-09 1.71e-08 0.19423 0.315 0.0022801 0.00655 0.0030151 0.00838 9.9999e-06 3.86e-05 0.22548 0.359 0.27622 0.42 del_8p23.2 88 (8%) 997 5.9551e-05 0.000213 6.9186e-05 0.000243 1.0949e-05 4.2e-05 0.82184 0.895 0.011126 0.0264 0.31877 0.461 0.00014 0.000468 0.01457 0.0339 0.57133 0.691 del_8q24.3 78 (7%) 1007 0.011742 0.0277 0.19361 0.315 0.02489 0.0542 0.34043 0.488 0.012761 0.0298 0.84482 0.908 0.081989 0.152 0.24808 0.388 1 1 del_9p21.3 592 (55%) 493 0 0 1.6468e-30 2.85e-29 1.3105e-38 2.53e-37 0.42172 0.563 4.0913e-10 3e-09 2.1485e-13 2.13e-12 9.9999e-06 3.86e-05 0.01547 0.0356 0.062993 0.121 del_10p15.3 549 (51%) 536 0 0 9.8336e-72 2.77e-70 9.8342e-110 3.69e-108 0.064863 0.124 1.1341e-15 1.42e-14 2.8138e-18 4.22e-17 9.9999e-06 3.86e-05 0.0072499 0.0184 0.0049748 0.0132 del_10p13 549 (51%) 536 0 0 6.2476e-72 1.83e-70 4.3226e-111 1.72e-109 0.026711 0.0572 9.4953e-17 1.36e-15 1.1112e-16 1.56e-15 9.9999e-06 3.86e-05 0.01684 0.0387 0.0049748 0.0132 del_10q23.31 624 (58%) 461 0 0 4.0224e-64 1.04e-62 7.8228e-119 3.3e-117 0.66347 0.772 3.5565e-19 5.58e-18 9.7089e-19 1.49e-17 9.9999e-06 3.86e-05 0.0081399 0.0203 0.0081851 0.0203 del_10q26.3 661 (61%) 424 0 0 2.5564e-50 5.57e-49 2.9815e-97 1.01e-95 0.9497 0.986 5.3234e-17 7.81e-16 1.5049e-16 2.03e-15 9.9999e-06 3.86e-05 0.0091899 0.0225 0.026931 0.0573 del_11p15.5 234 (22%) 851 0.60906 0.723 0.00055616 0.00175 0.4598 0.601 0.051632 0.102 0.011099 0.0264 0.53742 0.668 2e-05 7.42e-05 0.79628 0.881 1 1 del_11p15.1 176 (16%) 909 0.096677 0.173 0.65285 0.762 0.070121 0.133 0.044846 0.0895 0.024334 0.0532 0.33254 0.479 0.00036 0.00117 0.46816 0.608 0.52809 0.661 del_11p11.2 159 (15%) 926 0.00242 0.00692 0.39633 0.543 0.00029508 0.000962 0.25867 0.398 0.0029366 0.00819 0.6716 0.78 8.9999e-05 0.00031 0.65416 0.763 0.82529 0.896 del_12p13.1 110 (10%) 975 0.043173 0.087 0.41944 0.561 0.0063191 0.0162 0.5419 0.671 0.15412 0.261 0.71178 0.816 0.01713 0.0391 0.28819 0.434 0.11615 0.204 del_12q12 147 (14%) 938 0.82785 0.897 0.8403 0.906 0.92937 0.968 0.78771 0.877 0.29019 0.435 0.61125 0.724 0.00123 0.00374 0.19667 0.318 0.25712 0.396 del_12q15 142 (13%) 943 0.87046 0.927 0.83933 0.906 0.52808 0.661 0.92737 0.968 0.39179 0.541 0.92774 0.968 0.0057499 0.0149 0.17047 0.283 1 1 del_13q14.2 382 (35%) 703 1.2922e-05 4.87e-05 0.057728 0.112 1.2412e-06 6.81e-06 0.1562 0.263 0.0020605 0.00599 0.0041299 0.0112 9.9999e-06 3.86e-05 0.57473 0.693 0.26335 0.403 del_13q22.1 365 (34%) 720 4.6631e-06 2.4e-05 0.012232 0.0287 6.3793e-06 3.21e-05 0.29731 0.442 0.012185 0.0287 0.0018079 0.00531 9.9999e-05 0.000341 0.56088 0.687 0.14176 0.242 del_14q13.1 244 (22%) 841 5.8393e-11 4.81e-10 1.6744e-09 1.12e-08 4.6718e-12 4.1e-11 0.37693 0.525 0.02046 0.0456 0.0074924 0.0189 9.9999e-06 3.86e-05 0.04422 0.0887 0.056785 0.111 del_14q24.2 291 (27%) 794 0.0032706 0.00905 0.093771 0.169 0.019562 0.0437 0.051613 0.102 0.41973 0.561 0.24851 0.388 0.04048 0.0821 0.1651 0.276 0.48298 0.617 del_14q31.3 275 (25%) 810 0.0045103 0.0122 0.099949 0.177 0.059124 0.115 0.047671 0.0946 0.3238 0.467 0.30937 0.453 0.076849 0.144 0.096209 0.172 0.85901 0.919 del_15q14 215 (20%) 870 2.7823e-08 1.71e-07 3.1457e-07 1.78e-06 4.6014e-10 3.3e-09 0.39609 0.543 0.52758 0.661 0.02437 0.0532 9.9999e-06 3.86e-05 0.62776 0.74 0.56719 0.69 del_16p12.2 114 (11%) 971 1.6257e-10 1.26e-09 1.2761e-07 7.49e-07 8.5356e-11 6.78e-10 0.36829 0.515 0.060922 0.118 0.44651 0.59 9.9999e-06 3.86e-05 0.57105 0.691 1 1 del_16q23.1 128 (12%) 957 2.537e-10 1.9e-09 4.1089e-05 0.000149 4.3593e-10 3.16e-09 0.92421 0.968 0.091134 0.165 0.0074531 0.0188 9.9999e-06 3.86e-05 0.34461 0.489 0.8113 0.889 del_17p13.1 116 (11%) 969 2.6508e-10 1.97e-09 1.7082e-07 9.85e-07 5.3631e-14 5.66e-13 0.13615 0.234 0.034496 0.0714 0.0047884 0.0128 9.9999e-06 3.86e-05 0.60589 0.723 0.46593 0.607 del_17q11.2 93 (9%) 992 5.2786e-09 3.33e-08 7.9859e-05 0.000276 3.9407e-07 2.22e-06 0.91263 0.966 0.1167 0.204 0.0035446 0.00973 5e-05 0.00018 0.093149 0.168 0.40764 0.554 del_18q23 155 (14%) 930 0.19348 0.315 0.28271 0.428 0.43436 0.577 0.25349 0.393 0.30473 0.449 0.74791 0.847 0.53318 0.665 0.2384 0.376 0.26321 0.403 del_19q13.41 364 (34%) 721 0 0 2.5501e-09 1.66e-08 2.9342e-35 5.35e-34 0.19306 0.315 3.3248e-08 2.02e-07 2.5168e-05 9.28e-05 9.9999e-06 3.86e-05 0.817 0.894 0.14394 0.245 del_19q13.43 355 (33%) 730 0 0 2.9763e-14 3.29e-13 2.7194e-41 5.74e-40 0.26488 0.405 2.5167e-09 1.65e-08 2.846e-06 1.5e-05 9.9999e-06 3.86e-05 0.30037 0.445 0.193 0.315 del_22q13.32 289 (27%) 796 3.8501e-12 3.42e-11 1.9177e-10 1.45e-09 1.3244e-16 1.82e-15 0.53146 0.664 0.0001748 0.000581 0.0039979 0.0109 9.9999e-06 3.86e-05 0.30307 0.448 0.1176 0.205 del_xq21.1 183 (17%) 902 0.4766 0.613 0.030563 0.0641 0.1939 0.315 0.68165 0.788 0.56441 0.69 0.081776 0.152 0.63317 0.744 0.69646 0.802 1 1