name	nmut	n_coding	n_flank	n_coding_nonsilent	fracflank	callscheme	callscheme_name	N_tot	nsil_tot	nnon_tot	rate_sil	rate_non
TCGA-02-0003-01A-01D-1490-08	61	59	2	46	3.278689e-02	1	exome+100bp flanks	34834024	12	45	3.444908e-07	1.291840e-06
TCGA-02-0033-01A-01D-1490-08	50	47	3	34	6.000000e-02	1	exome+100bp flanks	34834024	12	31	3.444908e-07	8.899345e-07
TCGA-02-0047-01A-01D-1490-08	86	85	1	70	1.162791e-02	0	coding only	34834024	14	67	4.019059e-07	1.923407e-06
TCGA-02-0055-01A-01D-1490-08	80	77	3	56	3.750000e-02	1	exome+100bp flanks	34834024	20	53	5.741513e-07	1.521501e-06
TCGA-02-2470-01A-01D-1494-08	83	79	4	61	4.819277e-02	1	exome+100bp flanks	34834024	17	55	4.880286e-07	1.578916e-06
TCGA-02-2483-01A-01D-1494-08	71	70	1	53	1.408451e-02	0	coding only	34834024	17	52	4.880286e-07	1.492793e-06
TCGA-02-2485-01A-01D-1494-08	78	76	2	58	2.564103e-02	0	coding only	34834024	16	56	4.593210e-07	1.607624e-06
TCGA-02-2486-01A-01D-1494-08	72	71	1	56	1.388889e-02	0	coding only	34834024	14	52	4.019059e-07	1.492793e-06
TCGA-06-0119-01A-08D-1490-08	80	79	1	68	1.250000e-02	0	coding only	34834024	9	65	2.583681e-07	1.865992e-06
TCGA-06-0122-01A-01D-1490-08	99	96	3	70	3.030303e-02	1	exome+100bp flanks	34834024	23	67	6.602740e-07	1.923407e-06
TCGA-06-0124-01A-01D-1490-08	75	73	2	57	2.666667e-02	0	coding only	34834024	15	55	4.306135e-07	1.578916e-06
TCGA-06-0126-01A-01D-1490-08	67	65	2	49	2.985075e-02	0	coding only	34834024	16	47	4.593210e-07	1.349256e-06
TCGA-06-0128-01A-01D-1490-08	84	81	3	61	3.571429e-02	1	exome+100bp flanks	34834024	20	60	5.741513e-07	1.722454e-06
TCGA-06-0129-01A-01D-1490-08	52	52	0	44	0	0	coding only	34834024	7	43	2.009530e-07	1.234425e-06
TCGA-06-0130-01A-01D-1490-08	36	36	0	28	0	1	exome+100bp flanks	34834024	7	27	2.009530e-07	7.751042e-07
TCGA-06-0132-01A-02D-1491-08	38	38	0	24	0	1	exome+100bp flanks	34834024	12	24	3.444908e-07	6.889816e-07
TCGA-06-0137-01A-01D-1490-08	103	102	1	66	9.708738e-03	0	coding only	34834024	31	62	8.899345e-07	1.779869e-06
TCGA-06-0139-01A-01D-1490-08	10	10	0	8	0	1	exome+100bp flanks	34834024	2	7	5.741513e-08	2.009530e-07
TCGA-06-0140-01A-01D-1490-08	55	54	1	42	1.818182e-02	0	coding only	34834024	12	39	3.444908e-07	1.119595e-06
TCGA-06-0141-01A-01D-1490-08	32	31	1	24	3.125000e-02	1	exome+100bp flanks	34834024	7	24	2.009530e-07	6.889816e-07
TCGA-06-0142-01A-01D-1490-08	56	56	0	44	0	0	coding only	34834024	12	40	3.444908e-07	1.148303e-06
TCGA-06-0145-01A-01W-0224-08	109	106	3	83	2.752294e-02	0	coding only	34834024	20	81	5.741513e-07	2.325313e-06
TCGA-06-0151-01A-01D-1491-08	29	29	0	26	0	1	exome+100bp flanks	34834024	3	25	8.612269e-08	7.176891e-07
TCGA-06-0152-01A-02W-0323-08	79	75	4	52	5.063291e-02	1	exome+100bp flanks	34834024	22	50	6.315664e-07	1.435378e-06
TCGA-06-0154-01A-03D-1491-08	78	77	1	60	1.282051e-02	0	coding only	34834024	17	58	4.880286e-07	1.665039e-06
TCGA-06-0155-01B-01D-1492-08	90	89	1	69	1.111111e-02	0	coding only	34834024	18	68	5.167362e-07	1.952114e-06
TCGA-06-0157-01A-01D-1491-08	63	63	0	48	0	0	coding only	34834024	15	47	4.306135e-07	1.349256e-06
TCGA-06-0158-01A-01D-1491-08	71	68	3	50	4.225352e-02	1	exome+100bp flanks	34834024	18	48	5.167362e-07	1.377963e-06
TCGA-06-0165-01A-01D-1491-08	8	8	0	8	0	1	exome+100bp flanks	34834024	0	8	0	2.296605e-07
TCGA-06-0166-01A-01D-1491-08	57	54	3	49	5.263158e-02	1	exome+100bp flanks	34834024	5	49	1.435378e-07	1.406671e-06
TCGA-06-0167-01A-01D-1491-08	6	6	0	3	0	1	exome+100bp flanks	34834024	3	3	8.612269e-08	8.612269e-08
TCGA-06-0168-01A-01D-1491-08	58	57	1	43	1.724138e-02	0	coding only	34834024	14	38	4.019059e-07	1.090887e-06
TCGA-06-0169-01A-01D-1490-08	69	67	2	49	2.898551e-02	0	coding only	34834024	17	46	4.880286e-07	1.320548e-06
TCGA-06-0173-01A-01D-1491-08	104	101	3	79	2.884615e-02	0	coding only	34834024	22	74	6.315664e-07	2.124360e-06
TCGA-06-0174-01A-01D-1491-08	101	98	3	77	2.970297e-02	0	coding only	34834024	21	74	6.028589e-07	2.124360e-06
TCGA-06-0178-01A-01D-1491-08	3	2	1	2	3.333333e-01	1	exome+100bp flanks	34834024	0	2	0	5.741513e-08
TCGA-06-0184-01A-01D-1491-08	67	66	1	48	1.492537e-02	0	coding only	34834024	17	46	4.880286e-07	1.320548e-06
TCGA-06-0185-01A-01W-0254-08	85	83	2	65	2.352941e-02	0	coding only	34834024	16	61	4.593210e-07	1.751161e-06
TCGA-06-0188-01A-01W-0254-08	60	58	2	42	3.333333e-02	1	exome+100bp flanks	34834024	15	39	4.306135e-07	1.119595e-06
TCGA-06-0189-01A-01D-1491-08	29	29	0	25	0	1	exome+100bp flanks	34834024	4	23	1.148303e-07	6.602740e-07
TCGA-06-0192-01B-01W-0348-08	85	84	1	60	1.176471e-02	0	coding only	34834024	23	57	6.602740e-07	1.636331e-06
TCGA-06-0195-01B-01D-1491-08	97	90	7	74	7.216495e-02	1	exome+100bp flanks	34834024	16	71	4.593210e-07	2.038237e-06
TCGA-06-0209-01A-01D-1491-08	88	86	2	66	2.272727e-02	0	coding only	34834024	19	58	5.454437e-07	1.665039e-06
TCGA-06-0213-01A-01D-1491-08	76	73	3	55	3.947368e-02	1	exome+100bp flanks	34834024	17	54	4.880286e-07	1.550208e-06
TCGA-06-0214-01A-02D-1491-08	90	89	1	63	1.111111e-02	0	coding only	34834024	26	62	7.463967e-07	1.779869e-06
TCGA-06-0216-01B-01D-1492-08	73	72	1	51	1.369863e-02	0	coding only	34834024	21	49	6.028589e-07	1.406671e-06
TCGA-06-0219-01A-01D-1491-08	53	53	0	42	0	0	coding only	34834024	10	38	2.870756e-07	1.090887e-06
TCGA-06-0237-01A-02D-1491-08	58	56	2	39	3.448276e-02	1	exome+100bp flanks	34834024	15	37	4.306135e-07	1.062180e-06
TCGA-06-0238-01A-02D-1492-08	45	45	0	40	0	1	exome+100bp flanks	34834024	5	36	1.435378e-07	1.033472e-06
TCGA-06-0240-01A-03D-1491-08	14	14	0	12	0	1	exome+100bp flanks	34834024	2	11	5.741513e-08	3.157832e-07
TCGA-06-0241-01A-02D-1491-08	76	74	2	52	2.631579e-02	0	coding only	34834024	22	50	6.315664e-07	1.435378e-06
TCGA-06-0644-01A-02D-1492-08	78	77	1	51	1.282051e-02	0	coding only	34834024	25	45	7.176891e-07	1.291840e-06
TCGA-06-0645-01A-01D-1492-08	74	73	1	52	1.351351e-02	0	coding only	34834024	19	52	5.454437e-07	1.492793e-06
TCGA-06-0646-01A-01D-1492-08	53	52	1	38	1.886792e-02	0	coding only	34834024	14	37	4.019059e-07	1.062180e-06
TCGA-06-0648-01A-01W-0323-08	90	88	2	63	2.222222e-02	0	coding only	34834024	23	59	6.602740e-07	1.693746e-06
TCGA-06-0649-01B-01W-0348-08	127	125	2	92	1.574803e-02	0	coding only	34834024	32	87	9.186421e-07	2.497558e-06
TCGA-06-0650-01A-02D-1696-08	43	43	0	33	0	1	exome+100bp flanks	34834024	10	30	2.870756e-07	8.612269e-07
TCGA-06-0686-01A-01W-0348-08	81	80	1	66	1.234568e-02	0	coding only	34834024	14	64	4.019059e-07	1.837284e-06
TCGA-06-0743-01A-01D-1492-08	124	119	5	85	4.032258e-02	1	exome+100bp flanks	34834024	33	80	9.473496e-07	2.296605e-06
TCGA-06-0744-01A-01W-0348-08	99	95	4	72	4.040404e-02	1	exome+100bp flanks	34834024	20	69	5.741513e-07	1.980822e-06
TCGA-06-0745-01A-01W-0348-08	58	55	3	43	5.172414e-02	1	exome+100bp flanks	34834024	11	43	3.157832e-07	1.234425e-06
TCGA-06-0747-01A-01W-0348-08	94	92	2	72	2.127660e-02	0	coding only	34834024	19	70	5.454437e-07	2.009530e-06
TCGA-06-0749-01A-01W-0348-08	73	70	3	49	4.109589e-02	1	exome+100bp flanks	34834024	18	49	5.167362e-07	1.406671e-06
TCGA-06-0750-01A-01W-0348-08	48	47	1	37	2.083333e-02	1	exome+100bp flanks	34834024	9	35	2.583681e-07	1.004765e-06
TCGA-06-0875-01A-01W-0424-08	78	77	1	62	1.282051e-02	0	coding only	34834024	14	61	4.019059e-07	1.751161e-06
TCGA-06-0876-01A-01W-0424-08	88	87	1	64	1.136364e-02	0	coding only	34834024	22	61	6.315664e-07	1.751161e-06
TCGA-06-0877-01A-01W-0424-08	89	89	0	66	0	0	coding only	34834024	22	65	6.315664e-07	1.865992e-06
TCGA-06-0878-01A-01W-0424-08	62	59	3	43	4.838710e-02	1	exome+100bp flanks	34834024	15	41	4.306135e-07	1.177010e-06
TCGA-06-0879-01A-01W-0424-08	70	69	1	49	1.428571e-02	0	coding only	34834024	19	46	5.454437e-07	1.320548e-06
TCGA-06-0881-01A-02W-0424-08	34	31	3	24	8.823529e-02	1	exome+100bp flanks	34834024	7	24	2.009530e-07	6.889816e-07
TCGA-06-0882-01A-01W-0424-08	51	50	1	35	1.960784e-02	0	coding only	34834024	15	34	4.306135e-07	9.760572e-07
TCGA-06-0939-01A-01D-1353-08	111	110	1	76	9.009009e-03	0	coding only	34834024	33	71	9.473496e-07	2.038237e-06
TCGA-06-1804-01A-01D-1696-08	101	99	2	68	1.980198e-02	0	coding only	34834024	30	60	8.612269e-07	1.722454e-06
TCGA-06-1806-01A-02D-1845-08	38	37	1	25	2.631579e-02	1	exome+100bp flanks	34834024	11	25	3.157832e-07	7.176891e-07
TCGA-06-2557-01A-01D-1494-08	71	67	4	44	5.633803e-02	1	exome+100bp flanks	34834024	22	42	6.315664e-07	1.205718e-06
TCGA-06-2558-01A-01D-1494-08	101	95	6	70	5.940594e-02	1	exome+100bp flanks	34834024	23	63	6.602740e-07	1.808577e-06
TCGA-06-2559-01A-01D-1494-08	89	84	5	59	5.617978e-02	1	exome+100bp flanks	34834024	24	55	6.889816e-07	1.578916e-06
TCGA-06-2561-01A-02D-1494-08	48	48	0	42	0	1	exome+100bp flanks	34834024	6	38	1.722454e-07	1.090887e-06
TCGA-06-2562-01A-01D-1494-08	86	83	3	63	3.488372e-02	1	exome+100bp flanks	34834024	20	59	5.741513e-07	1.693746e-06
TCGA-06-2563-01A-01D-1494-08	91	87	4	67	4.395604e-02	1	exome+100bp flanks	34834024	19	65	5.454437e-07	1.865992e-06
TCGA-06-2564-01A-01D-1494-08	82	79	3	59	3.658537e-02	1	exome+100bp flanks	34834024	20	53	5.741513e-07	1.521501e-06
TCGA-06-2565-01A-01D-1494-08	74	72	2	58	2.702703e-02	0	coding only	34834024	14	55	4.019059e-07	1.578916e-06
TCGA-06-2567-01A-01D-1494-08	76	76	0	53	0	0	coding only	34834024	23	51	6.602740e-07	1.464086e-06
TCGA-06-2569-01A-01D-1494-08	40	37	3	30	7.500000e-02	1	exome+100bp flanks	34834024	7	29	2.009530e-07	8.325194e-07
TCGA-06-2570-01A-01D-1495-08	47	46	1	35	2.127660e-02	1	exome+100bp flanks	34834024	11	32	3.157832e-07	9.186421e-07
TCGA-06-5408-01A-01D-1696-08	65	60	5	44	7.692308e-02	1	exome+100bp flanks	34834024	16	39	4.593210e-07	1.119595e-06
TCGA-06-5410-01A-01D-1696-08	38	38	0	24	0	1	exome+100bp flanks	34834024	14	23	4.019059e-07	6.602740e-07
TCGA-06-5411-01A-01D-1696-08	50	46	4	36	8.000000e-02	1	exome+100bp flanks	34834024	8	34	2.296605e-07	9.760572e-07
TCGA-06-5412-01A-01D-1696-08	74	72	2	55	2.702703e-02	0	coding only	34834024	16	53	4.593210e-07	1.521501e-06
TCGA-06-5413-01A-01D-1696-08	68	61	7	46	1.029412e-01	1	exome+100bp flanks	34834024	15	45	4.306135e-07	1.291840e-06
TCGA-06-5414-01A-01D-1486-08	51	49	2	35	3.921569e-02	1	exome+100bp flanks	34834024	14	35	4.019059e-07	1.004765e-06
TCGA-06-5415-01A-01D-1486-08	73	71	2	47	2.739726e-02	0	coding only	34834024	24	47	6.889816e-07	1.349256e-06
TCGA-06-5417-01A-01D-1486-08	71	69	2	53	2.816901e-02	0	coding only	34834024	15	53	4.306135e-07	1.521501e-06
TCGA-06-5418-01A-01D-1486-08	58	57	1	38	1.724138e-02	0	coding only	34834024	17	38	4.880286e-07	1.090887e-06
TCGA-06-5856-01A-01D-1696-08	69	69	0	55	0	0	coding only	34834024	14	54	4.019059e-07	1.550208e-06
TCGA-06-5858-01A-01D-1696-08	264	259	5	174	1.893939e-02	0	coding only	34834024	84	164	2.411435e-06	4.708041e-06
TCGA-06-5859-01A-01D-1696-08	54	52	2	40	3.703704e-02	1	exome+100bp flanks	34834024	11	39	3.157832e-07	1.119595e-06
TCGA-06-6388-01A-12D-1845-08	67	63	4	43	5.970149e-02	1	exome+100bp flanks	34834024	19	40	5.454437e-07	1.148303e-06
TCGA-06-6389-01A-11D-1696-08	50	48	2	33	4.000000e-02	1	exome+100bp flanks	34834024	15	32	4.306135e-07	9.186421e-07
TCGA-06-6390-01A-11D-1696-08	56	55	1	38	1.785714e-02	0	coding only	34834024	16	36	4.593210e-07	1.033472e-06
TCGA-06-6391-01A-11D-1696-08	78	77	1	58	1.282051e-02	0	coding only	34834024	17	56	4.880286e-07	1.607624e-06
TCGA-06-6693-01A-11D-1845-08	66	61	5	45	7.575758e-02	1	exome+100bp flanks	34834024	15	45	4.306135e-07	1.291840e-06
TCGA-06-6694-01A-12D-1845-08	114	112	2	69	1.754386e-02	0	coding only	34834024	42	66	1.205718e-06	1.894699e-06
TCGA-06-6695-01A-11D-1845-08	71	68	3	53	4.225352e-02	1	exome+100bp flanks	34834024	15	50	4.306135e-07	1.435378e-06
TCGA-06-6697-01A-11D-1845-08	80	78	2	62	2.500000e-02	0	coding only	34834024	16	60	4.593210e-07	1.722454e-06
TCGA-06-6698-01A-11D-1845-08	51	51	0	41	0	0	coding only	34834024	10	38	2.870756e-07	1.090887e-06
TCGA-06-6699-01A-11D-1845-08	76	75	1	58	1.315789e-02	0	coding only	34834024	15	57	4.306135e-07	1.636331e-06
TCGA-06-6700-01A-12D-1845-08	63	61	2	48	3.174603e-02	1	exome+100bp flanks	34834024	10	44	2.870756e-07	1.263133e-06
TCGA-06-6701-01A-11D-1845-08	50	49	1	38	2.000000e-02	0	coding only	34834024	11	34	3.157832e-07	9.760572e-07
TCGA-08-0386-01A-01D-1492-08	17	17	0	11	0	1	exome+100bp flanks	34834024	6	11	1.722454e-07	3.157832e-07
TCGA-12-0615-01A-01D-1492-08	77	75	2	55	2.597403e-02	0	coding only	34834024	20	51	5.741513e-07	1.464086e-06
TCGA-12-0616-01A-01D-1492-08	53	51	2	36	3.773585e-02	1	exome+100bp flanks	34834024	15	34	4.306135e-07	9.760572e-07
TCGA-12-0618-01A-01D-1492-08	66	65	1	53	1.515152e-02	0	coding only	34834024	12	49	3.444908e-07	1.406671e-06
TCGA-12-0619-01A-01D-1492-08	69	68	1	55	1.449275e-02	0	coding only	34834024	13	51	3.731983e-07	1.464086e-06
TCGA-12-0688-01A-02D-1492-08	73	70	3	43	4.109589e-02	1	exome+100bp flanks	34834024	23	39	6.602740e-07	1.119595e-06
TCGA-12-0692-01A-01W-0348-08	89	86	3	66	3.370787e-02	1	exome+100bp flanks	34834024	19	63	5.454437e-07	1.808577e-06
TCGA-12-0821-01A-01W-0424-08	105	101	4	73	3.809524e-02	1	exome+100bp flanks	34834024	27	71	7.751042e-07	2.038237e-06
TCGA-12-1597-01B-01D-1495-08	93	90	3	71	3.225806e-02	1	exome+100bp flanks	34834024	18	62	5.167362e-07	1.779869e-06
TCGA-12-3649-01A-01D-1495-08	101	99	2	81	1.980198e-02	0	coding only	34834024	17	74	4.880286e-07	2.124360e-06
TCGA-12-3650-01A-01D-1495-08	68	66	2	50	2.941176e-02	0	coding only	34834024	16	48	4.593210e-07	1.377963e-06
TCGA-12-3652-01A-01D-1495-08	76	74	2	54	2.631579e-02	0	coding only	34834024	20	53	5.741513e-07	1.521501e-06
TCGA-12-3653-01A-01D-1495-08	45	43	2	35	4.444444e-02	1	exome+100bp flanks	34834024	7	32	2.009530e-07	9.186421e-07
TCGA-12-5295-01A-01D-1486-08	94	92	2	70	2.127660e-02	0	coding only	34834024	20	68	5.741513e-07	1.952114e-06
TCGA-12-5299-01A-02D-1486-08	52	50	2	35	3.846154e-02	1	exome+100bp flanks	34834024	14	35	4.019059e-07	1.004765e-06
TCGA-12-5301-01A-01D-1486-08	89	88	1	63	1.123596e-02	0	coding only	34834024	22	55	6.315664e-07	1.578916e-06
TCGA-14-0740-01B-01D-1845-08	61	58	3	43	4.918033e-02	1	exome+100bp flanks	34834024	15	42	4.306135e-07	1.205718e-06
TCGA-14-0781-01B-01D-1696-08	43	42	1	34	2.325581e-02	1	exome+100bp flanks	34834024	6	33	1.722454e-07	9.473496e-07
TCGA-14-0786-01B-01D-1492-08	55	50	5	38	9.090909e-02	1	exome+100bp flanks	34834024	12	36	3.444908e-07	1.033472e-06
TCGA-14-0787-01A-01W-0424-08	47	45	2	31	4.255319e-02	1	exome+100bp flanks	34834024	13	29	3.731983e-07	8.325194e-07
TCGA-14-0789-01A-01W-0424-08	89	86	3	60	3.370787e-02	1	exome+100bp flanks	34834024	25	60	7.176891e-07	1.722454e-06
TCGA-14-0790-01B-01D-1494-08	80	78	2	58	2.500000e-02	0	coding only	34834024	17	56	4.880286e-07	1.607624e-06
TCGA-14-0813-01A-01W-0424-08	119	115	4	85	3.361345e-02	1	exome+100bp flanks	34834024	29	78	8.325194e-07	2.239190e-06
TCGA-14-0817-01A-01W-0424-08	90	87	3	70	3.333333e-02	1	exome+100bp flanks	34834024	17	66	4.880286e-07	1.894699e-06
TCGA-14-0862-01B-01D-1845-08	52	51	1	38	1.923077e-02	0	coding only	34834024	13	37	3.731983e-07	1.062180e-06
TCGA-14-0871-01A-01W-0424-08	69	67	2	56	2.898551e-02	0	coding only	34834024	9	55	2.583681e-07	1.578916e-06
TCGA-14-1043-01B-11D-1845-08	29	26	3	18	1.034483e-01	1	exome+100bp flanks	34834024	7	18	2.009530e-07	5.167362e-07
TCGA-14-1395-01B-11D-1845-08	66	66	0	50	0	0	coding only	34834024	14	47	4.019059e-07	1.349256e-06
TCGA-14-1450-01B-01D-1845-08	73	71	2	54	2.739726e-02	0	coding only	34834024	14	49	4.019059e-07	1.406671e-06
TCGA-14-1456-01B-01D-1494-08	33	32	1	26	3.030303e-02	1	exome+100bp flanks	34834024	5	26	1.435378e-07	7.463967e-07
TCGA-14-1823-01A-01W-0643-08	66	63	3	52	4.545455e-02	1	exome+100bp flanks	34834024	11	48	3.157832e-07	1.377963e-06
TCGA-14-1825-01A-01W-0643-08	64	61	3	47	4.687500e-02	1	exome+100bp flanks	34834024	12	42	3.444908e-07	1.205718e-06
TCGA-14-1829-01A-01W-0643-08	66	64	2	46	3.030303e-02	1	exome+100bp flanks	34834024	17	44	4.880286e-07	1.263133e-06
TCGA-14-2554-01A-01D-1494-08	84	82	2	62	2.380952e-02	0	coding only	34834024	19	58	5.454437e-07	1.665039e-06
TCGA-14-3476-01B-01D-1353-08	101	98	3	74	2.970297e-02	0	coding only	34834024	24	72	6.889816e-07	2.066945e-06
TCGA-14-4157-01A-01D-1353-08	73	70	3	58	4.109589e-02	1	exome+100bp flanks	34834024	11	54	3.157832e-07	1.550208e-06
TCGA-15-0742-01A-01W-0348-08	87	85	2	71	2.298851e-02	0	coding only	34834024	13	69	3.731983e-07	1.980822e-06
TCGA-15-1444-01A-02D-1696-08	24	23	1	16	4.166667e-02	1	exome+100bp flanks	34834024	7	15	2.009530e-07	4.306135e-07
TCGA-16-0846-01A-01W-0424-08	86	84	2	62	2.325581e-02	0	coding only	34834024	21	60	6.028589e-07	1.722454e-06
TCGA-16-0861-01A-01W-0424-08	76	75	1	59	1.315789e-02	0	coding only	34834024	15	57	4.306135e-07	1.636331e-06
TCGA-16-1045-01B-01W-0611-08	118	117	1	83	8.474576e-03	0	coding only	34834024	33	81	9.473496e-07	2.325313e-06
TCGA-16-1048-01B-01D-1353-08	104	101	3	77	2.884615e-02	0	coding only	34834024	24	72	6.889816e-07	2.066945e-06
TCGA-19-1390-01A-01D-1495-08	141	140	1	102	7.092199e-03	0	coding only	34834024	35	94	1.004765e-06	2.698511e-06
TCGA-19-1790-01B-01D-1353-08	191	188	3	145	1.570681e-02	0	coding only	34834024	39	139	1.119595e-06	3.990352e-06
TCGA-19-2619-01A-01D-1495-08	65	65	0	42	0	0	coding only	34834024	22	39	6.315664e-07	1.119595e-06
TCGA-19-2620-01A-01D-1495-08	89	89	0	67	0	0	coding only	34834024	21	66	6.028589e-07	1.894699e-06
TCGA-19-2623-01A-01D-1495-08	114	111	3	80	2.631579e-02	0	coding only	34834024	28	76	8.038118e-07	2.181775e-06
TCGA-19-2624-01A-01D-1495-08	58	56	2	44	3.448276e-02	1	exome+100bp flanks	34834024	11	41	3.157832e-07	1.177010e-06
TCGA-19-2625-01A-01D-1495-08	71	68	3	56	4.225352e-02	1	exome+100bp flanks	34834024	10	54	2.870756e-07	1.550208e-06
TCGA-19-2629-01A-01D-1495-08	124	118	6	96	4.838710e-02	1	exome+100bp flanks	34834024	22	93	6.315664e-07	2.669804e-06
TCGA-19-2631-01A-01D-1353-08	125	123	2	103	1.600000e-02	0	coding only	34834024	18	96	5.167362e-07	2.755926e-06
TCGA-19-4068-01A-01D-1353-08	87	83	4	52	4.597701e-02	1	exome+100bp flanks	34834024	29	51	8.325194e-07	1.464086e-06
TCGA-19-5947-01A-11D-1696-08	30	30	0	26	0	1	exome+100bp flanks	34834024	4	25	1.148303e-07	7.176891e-07
TCGA-19-5950-01A-11D-1696-08	65	64	1	52	1.538462e-02	0	coding only	34834024	11	52	3.157832e-07	1.492793e-06
TCGA-19-5951-01A-11D-1696-08	93	90	3	66	3.225806e-02	1	exome+100bp flanks	34834024	23	61	6.602740e-07	1.751161e-06
TCGA-19-5952-01A-11D-1696-08	52	51	1	38	1.923077e-02	0	coding only	34834024	13	36	3.731983e-07	1.033472e-06
TCGA-19-5953-01B-12D-1845-08	75	73	2	49	2.666667e-02	0	coding only	34834024	23	46	6.602740e-07	1.320548e-06
TCGA-19-5954-01A-11D-1696-08	92	91	1	70	1.086957e-02	0	coding only	34834024	21	67	6.028589e-07	1.923407e-06
TCGA-19-5955-01A-11D-1696-08	101	98	3	61	2.970297e-02	0	coding only	34834024	37	56	1.062180e-06	1.607624e-06
TCGA-19-5958-01A-11D-1696-08	53	51	2	38	3.773585e-02	1	exome+100bp flanks	34834024	12	34	3.444908e-07	9.760572e-07
TCGA-19-5959-01A-11D-1696-08	104	103	1	75	9.615385e-03	0	coding only	34834024	26	71	7.463967e-07	2.038237e-06
TCGA-19-5960-01A-11D-1696-08	51	51	0	43	0	0	coding only	34834024	8	43	2.296605e-07	1.234425e-06
TCGA-26-1439-01A-01D-1353-08	62	60	2	42	3.225806e-02	1	exome+100bp flanks	34834024	16	37	4.593210e-07	1.062180e-06
TCGA-26-1442-01A-01D-1696-08	60	59	1	43	1.666667e-02	0	coding only	34834024	15	39	4.306135e-07	1.119595e-06
TCGA-26-5132-01A-01D-1486-08	58	56	2	46	3.448276e-02	1	exome+100bp flanks	34834024	10	45	2.870756e-07	1.291840e-06
TCGA-26-5133-01A-01D-1486-08	67	66	1	47	1.492537e-02	0	coding only	34834024	18	41	5.167362e-07	1.177010e-06
TCGA-26-5134-01A-01D-1486-08	65	62	3	48	4.615385e-02	1	exome+100bp flanks	34834024	14	44	4.019059e-07	1.263133e-06
TCGA-26-5135-01A-01D-1486-08	78	78	0	53	0	0	coding only	34834024	23	51	6.602740e-07	1.464086e-06
TCGA-26-5136-01B-01D-1486-08	68	66	2	50	2.941176e-02	0	coding only	34834024	16	47	4.593210e-07	1.349256e-06
TCGA-26-5139-01A-01D-1486-08	62	58	4	37	6.451613e-02	1	exome+100bp flanks	34834024	20	35	5.741513e-07	1.004765e-06
TCGA-26-6173-01A-11D-1845-08	46	46	0	33	0	1	exome+100bp flanks	34834024	13	32	3.731983e-07	9.186421e-07
TCGA-26-6174-01A-21D-1845-08	103	102	1	84	9.708738e-03	0	coding only	34834024	16	81	4.593210e-07	2.325313e-06
TCGA-27-1830-01A-01W-0643-08	64	63	1	47	1.562500e-02	0	coding only	34834024	14	46	4.019059e-07	1.320548e-06
TCGA-27-1831-01A-01D-1494-08	73	73	0	62	0	0	coding only	34834024	10	60	2.870756e-07	1.722454e-06
TCGA-27-1832-01A-01W-0643-08	47	45	2	34	4.255319e-02	1	exome+100bp flanks	34834024	11	32	3.157832e-07	9.186421e-07
TCGA-27-1833-01A-01W-0643-08	77	68	9	50	1.168831e-01	1	exome+100bp flanks	34834024	18	48	5.167362e-07	1.377963e-06
TCGA-27-1834-01A-01W-0643-08	71	69	2	49	2.816901e-02	0	coding only	34834024	20	47	5.741513e-07	1.349256e-06
TCGA-27-1835-01A-01D-1494-08	79	77	2	62	2.531646e-02	0	coding only	34834024	12	61	3.444908e-07	1.751161e-06
TCGA-27-1836-01A-01D-1494-08	54	54	0	40	0	0	coding only	34834024	13	37	3.731983e-07	1.062180e-06
TCGA-27-1837-01A-01D-1494-08	44	43	1	34	2.272727e-02	1	exome+100bp flanks	34834024	9	31	2.583681e-07	8.899345e-07
TCGA-27-1838-01A-01D-1494-08	119	115	4	93	3.361345e-02	1	exome+100bp flanks	34834024	22	88	6.315664e-07	2.526266e-06
TCGA-27-2518-01A-01D-1494-08	64	62	2	37	3.125000e-02	1	exome+100bp flanks	34834024	24	37	6.889816e-07	1.062180e-06
TCGA-27-2519-01A-01D-1494-08	55	55	0	49	0	0	coding only	34834024	6	47	1.722454e-07	1.349256e-06
TCGA-27-2521-01A-01D-1494-08	86	85	1	63	1.162791e-02	0	coding only	34834024	22	59	6.315664e-07	1.693746e-06
TCGA-27-2523-01A-01D-1494-08	66	64	2	53	3.030303e-02	1	exome+100bp flanks	34834024	11	50	3.157832e-07	1.435378e-06
TCGA-27-2524-01A-01D-1494-08	75	72	3	53	4.000000e-02	1	exome+100bp flanks	34834024	17	50	4.880286e-07	1.435378e-06
TCGA-27-2526-01A-01D-1494-08	57	57	0	44	0	0	coding only	34834024	12	41	3.444908e-07	1.177010e-06
TCGA-27-2527-01A-01D-1494-08	82	79	3	64	3.658537e-02	1	exome+100bp flanks	34834024	15	61	4.306135e-07	1.751161e-06
TCGA-27-2528-01A-01D-1494-08	58	58	0	48	0	0	coding only	34834024	10	47	2.870756e-07	1.349256e-06
TCGA-28-1747-01C-01D-1494-08	54	51	3	42	5.555556e-02	1	exome+100bp flanks	34834024	9	40	2.583681e-07	1.148303e-06
TCGA-28-1753-01A-01D-1494-08	67	64	3	48	4.477612e-02	1	exome+100bp flanks	34834024	16	46	4.593210e-07	1.320548e-06
TCGA-28-2499-01A-01D-1494-08	35	34	1	30	2.857143e-02	1	exome+100bp flanks	34834024	4	29	1.148303e-07	8.325194e-07
TCGA-28-2501-01A-01D-1696-08	61	60	1	43	1.639344e-02	0	coding only	34834024	15	42	4.306135e-07	1.205718e-06
TCGA-28-2502-01B-01D-1494-08	71	69	2	50	2.816901e-02	0	coding only	34834024	18	49	5.167362e-07	1.406671e-06
TCGA-28-2509-01A-01D-1494-08	71	71	0	54	0	0	coding only	34834024	15	51	4.306135e-07	1.464086e-06
TCGA-28-2510-01A-01D-1696-08	34	33	1	25	2.941176e-02	1	exome+100bp flanks	34834024	8	24	2.296605e-07	6.889816e-07
TCGA-28-2513-01A-01D-1494-08	96	93	3	80	3.125000e-02	1	exome+100bp flanks	34834024	13	78	3.731983e-07	2.239190e-06
TCGA-28-2514-01A-02D-1494-08	58	57	1	45	1.724138e-02	0	coding only	34834024	12	43	3.444908e-07	1.234425e-06
TCGA-28-5204-01A-01D-1486-08	52	50	2	42	3.846154e-02	1	exome+100bp flanks	34834024	8	42	2.296605e-07	1.205718e-06
TCGA-28-5207-01A-01D-1486-08	71	70	1	52	1.408451e-02	0	coding only	34834024	18	49	5.167362e-07	1.406671e-06
TCGA-28-5208-01A-01D-1486-08	74	74	0	60	0	0	coding only	34834024	13	57	3.731983e-07	1.636331e-06
TCGA-28-5209-01A-01D-1486-08	117	116	1	92	8.547009e-03	0	coding only	34834024	23	92	6.602740e-07	2.641096e-06
TCGA-28-5211-01C-11D-1845-08	45	44	1	35	2.222222e-02	1	exome+100bp flanks	34834024	8	33	2.296605e-07	9.473496e-07
TCGA-28-5213-01A-01D-1486-08	65	65	0	47	0	0	coding only	34834024	17	44	4.880286e-07	1.263133e-06
TCGA-28-5214-01A-01D-1486-08	61	58	3	39	4.918033e-02	1	exome+100bp flanks	34834024	19	36	5.454437e-07	1.033472e-06
TCGA-28-5215-01A-01D-1486-08	47	46	1	32	2.127660e-02	1	exome+100bp flanks	34834024	14	30	4.019059e-07	8.612269e-07
TCGA-28-5216-01A-01D-1486-08	62	59	3	43	4.838710e-02	1	exome+100bp flanks	34834024	16	39	4.593210e-07	1.119595e-06
TCGA-28-5218-01A-01D-1486-08	34	34	0	29	0	1	exome+100bp flanks	34834024	5	29	1.435378e-07	8.325194e-07
TCGA-28-5219-01A-01D-1486-08	65	64	1	52	1.538462e-02	0	coding only	34834024	12	49	3.444908e-07	1.406671e-06
TCGA-28-5220-01A-01D-1486-08	50	50	0	40	0	0	coding only	34834024	10	38	2.870756e-07	1.090887e-06
TCGA-28-6450-01A-11D-1696-08	68	67	1	56	1.470588e-02	0	coding only	34834024	11	54	3.157832e-07	1.550208e-06
TCGA-32-1970-01A-01D-1494-08	100	96	4	74	4.000000e-02	1	exome+100bp flanks	34834024	21	69	6.028589e-07	1.980822e-06
TCGA-32-1977-01A-01D-1353-08	116	115	1	84	8.620690e-03	0	coding only	34834024	31	82	8.899345e-07	2.354020e-06
TCGA-32-1979-01A-01D-1696-08	101	99	2	72	1.980198e-02	0	coding only	34834024	25	70	7.176891e-07	2.009530e-06
TCGA-32-1980-01A-01D-1696-08	22	20	2	17	9.090909e-02	1	exome+100bp flanks	34834024	3	16	8.612269e-08	4.593210e-07
TCGA-32-1982-01A-01D-1494-08	99	95	4	67	4.040404e-02	1	exome+100bp flanks	34834024	27	65	7.751042e-07	1.865992e-06
TCGA-32-1986-01A-01D-1494-08	63	63	0	49	0	0	coding only	34834024	13	47	3.731983e-07	1.349256e-06
TCGA-32-1991-01A-01D-1353-08	83	79	4	59	4.819277e-02	1	exome+100bp flanks	34834024	18	54	5.167362e-07	1.550208e-06
TCGA-32-2491-01A-01D-1353-08	129	126	3	100	2.325581e-02	0	coding only	34834024	25	94	7.176891e-07	2.698511e-06
TCGA-32-2494-01A-01D-1353-08	96	93	3	71	3.125000e-02	1	exome+100bp flanks	34834024	22	70	6.315664e-07	2.009530e-06
TCGA-32-2495-01A-01D-1353-08	118	115	3	87	2.542373e-02	0	coding only	34834024	26	84	7.463967e-07	2.411435e-06
TCGA-32-2615-01A-01D-1495-08	52	52	0	35	0	0	coding only	34834024	15	32	4.306135e-07	9.186421e-07
TCGA-32-2632-01A-01D-1495-08	121	118	3	92	2.479339e-02	0	coding only	34834024	22	87	6.315664e-07	2.497558e-06
TCGA-32-2634-01A-01D-1495-08	59	58	1	46	1.694915e-02	0	coding only	34834024	11	44	3.157832e-07	1.263133e-06
TCGA-32-2638-01A-01D-1495-08	75	74	1	48	1.333333e-02	0	coding only	34834024	26	45	7.463967e-07	1.291840e-06
TCGA-32-4208-01A-01D-1353-08	83	80	3	70	3.614458e-02	1	exome+100bp flanks	34834024	9	68	2.583681e-07	1.952114e-06
TCGA-32-4209-01A-01D-1353-08	50	48	2	40	4.000000e-02	1	exome+100bp flanks	34834024	8	36	2.296605e-07	1.033472e-06
TCGA-32-4210-01A-01D-1353-08	123	120	3	87	2.439024e-02	0	coding only	34834024	32	82	9.186421e-07	2.354020e-06
TCGA-32-4211-01A-01D-1353-08	111	110	1	88	9.009009e-03	0	coding only	34834024	22	85	6.315664e-07	2.440143e-06
TCGA-32-4213-01A-01D-1353-08	90	90	0	66	0	0	coding only	34834024	22	62	6.315664e-07	1.779869e-06
TCGA-32-4719-01A-01D-1353-08	59	56	3	44	5.084746e-02	1	exome+100bp flanks	34834024	11	43	3.157832e-07	1.234425e-06
TCGA-32-5222-01A-01D-1486-08	100	99	1	72	1.000000e-02	0	coding only	34834024	25	70	7.176891e-07	2.009530e-06
TCGA-41-2571-01A-01D-1495-08	66	65	1	47	1.515152e-02	0	coding only	34834024	16	42	4.593210e-07	1.205718e-06
TCGA-41-2572-01A-01D-1353-08	83	81	2	55	2.409639e-02	0	coding only	34834024	25	52	7.176891e-07	1.492793e-06
TCGA-41-2573-01A-01D-1495-08	58	55	3	43	5.172414e-02	1	exome+100bp flanks	34834024	11	39	3.157832e-07	1.119595e-06
TCGA-41-2575-01A-01D-1495-08	80	77	3	61	3.750000e-02	1	exome+100bp flanks	34834024	16	56	4.593210e-07	1.607624e-06
TCGA-41-3392-01A-01D-1495-08	89	86	3	68	3.370787e-02	1	exome+100bp flanks	34834024	17	67	4.880286e-07	1.923407e-06
TCGA-41-3393-01A-01D-1353-08	95	93	2	73	2.105263e-02	0	coding only	34834024	18	68	5.167362e-07	1.952114e-06
TCGA-41-3915-01A-01D-1353-08	71	69	2	53	2.816901e-02	0	coding only	34834024	15	47	4.306135e-07	1.349256e-06
TCGA-41-4097-01A-01D-1353-08	87	85	2	67	2.298851e-02	0	coding only	34834024	18	63	5.167362e-07	1.808577e-06
TCGA-41-5651-01A-01D-1696-08	113	110	3	75	2.654867e-02	0	coding only	34834024	33	67	9.473496e-07	1.923407e-06
TCGA-41-6646-01A-11D-1845-08	60	56	4	49	6.666667e-02	1	exome+100bp flanks	34834024	7	45	2.009530e-07	1.291840e-06
TCGA-74-6573-01A-12D-1845-08	59	58	1	45	1.694915e-02	0	coding only	34834024	13	41	3.731983e-07	1.177010e-06
TCGA-74-6575-01A-11D-1845-08	126	123	3	90	2.380952e-02	0	coding only	34834024	32	84	9.186421e-07	2.411435e-06
TCGA-74-6577-01A-11D-1845-08	51	49	2	40	3.921569e-02	1	exome+100bp flanks	34834024	9	38	2.583681e-07	1.090887e-06
TCGA-74-6578-01A-11D-1845-08	91	89	2	67	2.197802e-02	0	coding only	34834024	21	64	6.028589e-07	1.837284e-06
TCGA-74-6584-01A-11D-1845-08	47	47	0	34	0	1	exome+100bp flanks	34834024	12	31	3.444908e-07	8.899345e-07
TCGA-76-4925-01A-01D-1486-08	79	77	2	58	2.531646e-02	0	coding only	34834024	18	52	5.167362e-07	1.492793e-06
TCGA-76-4926-01B-01D-1486-08	74	71	3	56	4.054054e-02	1	exome+100bp flanks	34834024	15	54	4.306135e-07	1.550208e-06
TCGA-76-4927-01A-01D-1486-08	71	69	2	50	2.816901e-02	0	coding only	34834024	18	47	5.167362e-07	1.349256e-06
TCGA-76-4928-01B-01D-1486-08	98	94	4	73	4.081633e-02	1	exome+100bp flanks	34834024	20	71	5.741513e-07	2.038237e-06
TCGA-76-4929-01A-01D-1486-08	77	76	1	50	1.298701e-02	0	coding only	34834024	26	47	7.463967e-07	1.349256e-06
TCGA-76-4931-01A-01D-1486-08	57	55	2	36	3.508772e-02	1	exome+100bp flanks	34834024	19	34	5.454437e-07	9.760572e-07
TCGA-76-4932-01A-01D-1486-08	81	79	2	59	2.469136e-02	0	coding only	34834024	18	57	5.167362e-07	1.636331e-06
TCGA-76-4934-01A-01D-1486-08	71	68	3	54	4.225352e-02	1	exome+100bp flanks	34834024	13	52	3.731983e-07	1.492793e-06
TCGA-76-4935-01A-01D-1486-08	72	71	1	56	1.388889e-02	0	coding only	34834024	13	54	3.731983e-07	1.550208e-06
TCGA-76-6191-01A-12D-1696-08	67	66	1	49	1.492537e-02	0	coding only	34834024	16	48	4.593210e-07	1.377963e-06
TCGA-76-6192-01A-11D-1696-08	67	67	0	48	0	0	coding only	34834024	16	45	4.593210e-07	1.291840e-06
TCGA-76-6193-01A-11D-1696-08	56	56	0	41	0	0	coding only	34834024	13	40	3.731983e-07	1.148303e-06
TCGA-76-6280-01A-21D-1845-08	70	68	2	55	2.857143e-02	0	coding only	34834024	12	54	3.444908e-07	1.550208e-06
TCGA-76-6282-01A-11D-1696-08	60	59	1	48	1.666667e-02	0	coding only	34834024	10	47	2.870756e-07	1.349256e-06
TCGA-76-6283-01A-11D-1845-08	116	114	2	88	1.724138e-02	0	coding only	34834024	25	84	7.176891e-07	2.411435e-06
TCGA-76-6285-01A-11D-1696-08	68	66	2	47	2.941176e-02	0	coding only	34834024	19	41	5.454437e-07	1.177010e-06
TCGA-76-6286-01A-11D-1845-08	85	82	3	57	3.529412e-02	1	exome+100bp flanks	34834024	24	54	6.889816e-07	1.550208e-06
TCGA-76-6656-01A-11D-1845-08	114	112	2	83	1.754386e-02	0	coding only	34834024	28	77	8.038118e-07	2.210482e-06
TCGA-76-6657-01A-11D-1845-08	69	69	0	56	0	0	coding only	34834024	13	53	3.731983e-07	1.521501e-06
TCGA-76-6660-01A-11D-1845-08	103	99	4	72	3.883495e-02	1	exome+100bp flanks	34834024	27	72	7.751042e-07	2.066945e-06
TCGA-76-6661-01B-11D-1845-08	69	66	3	50	4.347826e-02	1	exome+100bp flanks	34834024	16	50	4.593210e-07	1.435378e-06
TCGA-76-6662-01A-11D-1845-08	50	48	2	39	4.000000e-02	1	exome+100bp flanks	34834024	8	36	2.296605e-07	1.033472e-06
TCGA-76-6663-01A-11D-1845-08	73	73	0	53	0	0	coding only	34834024	19	51	5.454437e-07	1.464086e-06
TCGA-76-6664-01A-11D-1845-08	66	64	2	47	3.030303e-02	1	exome+100bp flanks	34834024	16	45	4.593210e-07	1.291840e-06
TCGA-81-5910-01A-11D-1696-08	60	59	1	45	1.666667e-02	0	coding only	34834024	14	43	4.019059e-07	1.234425e-06
TCGA-81-5911-01A-12D-1845-08	37	36	1	30	2.702703e-02	1	exome+100bp flanks	34834024	6	28	1.722454e-07	8.038118e-07
TCGA-87-5896-01A-01D-1696-08	66	65	1	40	1.515152e-02	0	coding only	34834024	22	37	6.315664e-07	1.062180e-06
TCGA-CS-4938-01B-11D-1893-08	31	26	5	16	1.612903e-01	1	exome+100bp flanks	34834024	10	15	2.870756e-07	4.306135e-07
TCGA-CS-4941-01A-01D-1468-08	76	72	4	59	5.263158e-02	1	exome+100bp flanks	34834024	13	56	3.731983e-07	1.607624e-06
TCGA-CS-4942-01A-01D-1468-08	56	49	7	38	1.250000e-01	1	exome+100bp flanks	34834024	11	37	3.157832e-07	1.062180e-06
TCGA-CS-4943-01A-01D-1468-08	46	43	3	29	6.521739e-02	1	exome+100bp flanks	34834024	12	26	3.444908e-07	7.463967e-07
TCGA-CS-4944-01A-01D-1468-08	30	28	2	25	6.666667e-02	1	exome+100bp flanks	34834024	3	23	8.612269e-08	6.602740e-07
TCGA-CS-5390-01A-02D-1468-08	67	60	7	50	1.044776e-01	1	exome+100bp flanks	34834024	8	44	2.296605e-07	1.263133e-06
TCGA-CS-5393-01A-01D-1468-08	47	44	3	33	6.382979e-02	1	exome+100bp flanks	34834024	10	32	2.870756e-07	9.186421e-07
TCGA-CS-5394-01A-01D-1468-08	33	25	8	20	2.424242e-01	1	exome+100bp flanks	34834024	5	19	1.435378e-07	5.454437e-07
TCGA-CS-5395-01A-01D-1468-08	74	65	9	59	1.216216e-01	1	exome+100bp flanks	34834024	6	52	1.722454e-07	1.492793e-06
TCGA-CS-5396-01A-02D-1468-08	51	43	8	32	1.568627e-01	1	exome+100bp flanks	34834024	10	29	2.870756e-07	8.325194e-07
TCGA-CS-5397-01A-01D-1893-08	52	45	7	30	1.346154e-01	1	exome+100bp flanks	34834024	14	28	4.019059e-07	8.038118e-07
TCGA-CS-6186-01A-12D-2024-08	66	64	2	48	3.030303e-02	1	exome+100bp flanks	34834024	15	46	4.306135e-07	1.320548e-06
TCGA-CS-6188-01A-11D-1893-08	62	56	6	37	9.677419e-02	1	exome+100bp flanks	34834024	19	34	5.454437e-07	9.760572e-07
TCGA-CS-6290-01A-11D-1705-08	28	28	0	22	0	1	exome+100bp flanks	34834024	5	22	1.435378e-07	6.315664e-07
TCGA-CS-6665-01A-11D-1893-08	93	89	4	70	4.301075e-02	1	exome+100bp flanks	34834024	19	69	5.454437e-07	1.980822e-06
TCGA-CS-6666-01A-11D-1893-08	74	73	1	60	1.351351e-02	0	coding only	34834024	12	57	3.444908e-07	1.636331e-06
TCGA-CS-6667-01A-12D-2024-08	33	29	4	21	1.212121e-01	1	exome+100bp flanks	34834024	7	20	2.009530e-07	5.741513e-07
TCGA-CS-6668-01A-11D-1893-08	41	37	4	27	9.756098e-02	1	exome+100bp flanks	34834024	9	26	2.583681e-07	7.463967e-07
TCGA-CS-6669-01A-11D-1893-08	5	4	1	4	2.000000e-01	1	exome+100bp flanks	34834024	0	4	0	1.148303e-07
TCGA-CS-6670-01A-11D-1893-08	54	51	3	41	5.555556e-02	1	exome+100bp flanks	34834024	10	39	2.870756e-07	1.119595e-06
TCGA-DB-5270-01A-02D-1468-08	38	33	5	25	1.315789e-01	1	exome+100bp flanks	34834024	8	25	2.296605e-07	7.176891e-07
TCGA-DB-5273-01A-01D-1468-08	28	24	4	15	1.428571e-01	1	exome+100bp flanks	34834024	8	15	2.296605e-07	4.306135e-07
TCGA-DB-5274-01A-01D-1468-08	81	75	6	56	7.407407e-02	1	exome+100bp flanks	34834024	18	54	5.167362e-07	1.550208e-06
TCGA-DB-5275-01A-01D-1468-08	64	60	4	52	6.250000e-02	1	exome+100bp flanks	34834024	8	48	2.296605e-07	1.377963e-06
TCGA-DB-5276-01A-01D-1468-08	33	28	5	25	1.515152e-01	1	exome+100bp flanks	34834024	3	24	8.612269e-08	6.889816e-07
TCGA-DB-5277-01A-01D-1468-08	71	67	4	49	5.633803e-02	1	exome+100bp flanks	34834024	18	45	5.167362e-07	1.291840e-06
TCGA-DB-5278-01A-01D-1468-08	12	12	0	12	0	1	exome+100bp flanks	34834024	0	11	0	3.157832e-07
TCGA-DB-5279-01A-01D-1468-08	67	64	3	42	4.477612e-02	1	exome+100bp flanks	34834024	22	41	6.315664e-07	1.177010e-06
TCGA-DB-5280-01A-01D-1468-08	47	38	9	32	1.914894e-01	1	exome+100bp flanks	34834024	6	30	1.722454e-07	8.612269e-07
TCGA-DB-5281-01A-01D-1468-08	66	63	3	51	4.545455e-02	1	exome+100bp flanks	34834024	12	45	3.444908e-07	1.291840e-06
TCGA-DB-A4X9-01A-11D-A26M-08	35	34	1	25	2.857143e-02	1	exome+100bp flanks	34834024	9	24	2.583681e-07	6.889816e-07
TCGA-DB-A4XA-01A-11D-A26M-08	22	18	4	16	1.818182e-01	1	exome+100bp flanks	34834024	2	16	5.741513e-08	4.593210e-07
TCGA-DB-A4XB-01A-11D-A26M-08	41	39	2	33	4.878049e-02	1	exome+100bp flanks	34834024	6	31	1.722454e-07	8.899345e-07
TCGA-DB-A4XC-01A-11D-A26M-08	30	28	2	24	6.666667e-02	1	exome+100bp flanks	34834024	4	24	1.148303e-07	6.889816e-07
TCGA-DB-A4XD-01A-11D-A27K-08	52	50	2	40	3.846154e-02	1	exome+100bp flanks	34834024	9	39	2.583681e-07	1.119595e-06
TCGA-DB-A4XE-01A-11D-A27K-08	46	39	7	32	1.521739e-01	1	exome+100bp flanks	34834024	7	31	2.009530e-07	8.899345e-07
TCGA-DB-A4XF-01A-11D-A27K-08	51	45	6	34	1.176471e-01	1	exome+100bp flanks	34834024	11	31	3.157832e-07	8.899345e-07
TCGA-DB-A4XG-01A-11D-A27K-08	37	37	0	29	0	1	exome+100bp flanks	34834024	8	27	2.296605e-07	7.751042e-07
TCGA-DB-A4XH-01A-11D-A27K-08	68	65	3	48	4.411765e-02	1	exome+100bp flanks	34834024	17	46	4.880286e-07	1.320548e-06
TCGA-DB-A64L-01A-11D-A29Q-08	126	120	6	95	4.761905e-02	1	exome+100bp flanks	34834024	24	92	6.889816e-07	2.641096e-06
TCGA-DB-A64O-01A-11D-A29Q-08	31	26	5	23	1.612903e-01	1	exome+100bp flanks	34834024	3	22	8.612269e-08	6.315664e-07
TCGA-DB-A64P-01A-11D-A29Q-08	39	33	6	29	1.538462e-01	1	exome+100bp flanks	34834024	4	29	1.148303e-07	8.325194e-07
TCGA-DB-A64Q-01A-11D-A29Q-08	35	30	5	25	1.428571e-01	1	exome+100bp flanks	34834024	5	23	1.435378e-07	6.602740e-07
TCGA-DB-A64R-01A-11D-A29Q-08	29	28	1	23	3.448276e-02	1	exome+100bp flanks	34834024	5	21	1.435378e-07	6.028589e-07
TCGA-DB-A64S-01A-11D-A29Q-08	21	19	2	19	9.523810e-02	1	exome+100bp flanks	34834024	0	18	0	5.167362e-07
TCGA-DB-A64U-01A-11D-A29Q-08	22	18	4	13	1.818182e-01	1	exome+100bp flanks	34834024	5	11	1.435378e-07	3.157832e-07
TCGA-DB-A64V-01A-11D-A29Q-08	47	45	2	34	4.255319e-02	1	exome+100bp flanks	34834024	10	31	2.870756e-07	8.899345e-07
TCGA-DB-A64W-01A-11D-A29Q-08	57	52	5	42	8.771930e-02	1	exome+100bp flanks	34834024	10	40	2.870756e-07	1.148303e-06
TCGA-DB-A64X-01A-11D-A29Q-08	114	108	6	74	5.263158e-02	1	exome+100bp flanks	34834024	32	73	9.186421e-07	2.095652e-06
TCGA-DB-A75K-01A-11D-A32B-08	51	50	1	40	1.960784e-02	0	coding only	34834024	10	40	2.870756e-07	1.148303e-06
TCGA-DB-A75L-01A-11D-A32B-08	50	49	1	39	2.000000e-02	0	coding only	34834024	10	39	2.870756e-07	1.119595e-06
TCGA-DB-A75M-01A-11D-A32B-08	31	30	1	27	3.225806e-02	1	exome+100bp flanks	34834024	3	24	8.612269e-08	6.889816e-07
TCGA-DB-A75O-01A-11D-A32B-08	26	24	2	20	7.692308e-02	1	exome+100bp flanks	34834024	4	18	1.148303e-07	5.167362e-07
TCGA-DB-A75P-01A-11D-A32B-08	9	8	1	6	1.111111e-01	1	exome+100bp flanks	34834024	2	6	5.741513e-08	1.722454e-07
TCGA-DH-5140-01A-01D-1468-08	50	46	4	36	8.000000e-02	1	exome+100bp flanks	34834024	8	36	2.296605e-07	1.033472e-06
TCGA-DH-5141-01A-01D-1468-08	42	41	1	31	2.380952e-02	1	exome+100bp flanks	34834024	8	30	2.296605e-07	8.612269e-07
TCGA-DH-5142-01A-01D-1468-08	73	68	5	50	6.849315e-02	1	exome+100bp flanks	34834024	16	48	4.593210e-07	1.377963e-06
TCGA-DH-5143-01A-01D-1468-08	64	60	4	47	6.250000e-02	1	exome+100bp flanks	34834024	13	44	3.731983e-07	1.263133e-06
TCGA-DH-5144-01A-01D-1468-08	60	57	3	44	5.000000e-02	1	exome+100bp flanks	34834024	13	44	3.731983e-07	1.263133e-06
TCGA-DH-A669-01A-12D-A31L-08	75	71	4	57	5.333333e-02	1	exome+100bp flanks	34834024	11	50	3.157832e-07	1.435378e-06
TCGA-DH-A66B-01A-11D-A29Q-08	64	56	8	48	1.250000e-01	1	exome+100bp flanks	34834024	8	47	2.296605e-07	1.349256e-06
TCGA-DH-A66D-01A-11D-A31L-08	61	55	6	50	9.836066e-02	1	exome+100bp flanks	34834024	5	50	1.435378e-07	1.435378e-06
TCGA-DH-A66F-01A-11D-A29Q-08	28	26	2	22	7.142857e-02	1	exome+100bp flanks	34834024	4	21	1.148303e-07	6.028589e-07
TCGA-DH-A66G-01A-21D-A31L-08	55	54	1	42	1.818182e-02	0	coding only	34834024	12	42	3.444908e-07	1.205718e-06
TCGA-DH-A7UR-01A-11D-A33T-08	104	102	2	78	1.923077e-02	0	coding only	34834024	22	72	6.315664e-07	2.066945e-06
TCGA-DH-A7US-01A-11D-A33T-08	67	65	2	49	2.985075e-02	0	coding only	34834024	13	45	3.731983e-07	1.291840e-06
TCGA-DH-A7UT-01A-12D-A34A-08	28	25	3	21	1.071429e-01	1	exome+100bp flanks	34834024	4	21	1.148303e-07	6.028589e-07
TCGA-DH-A7UU-01A-12D-A34A-08	63	60	3	46	4.761905e-02	1	exome+100bp flanks	34834024	13	43	3.731983e-07	1.234425e-06
TCGA-DH-A7UV-01A-12D-A34A-08	43	40	3	34	6.976744e-02	1	exome+100bp flanks	34834024	6	34	1.722454e-07	9.760572e-07
TCGA-DU-5847-01A-11D-1705-08	51	48	3	39	5.882353e-02	1	exome+100bp flanks	34834024	9	36	2.583681e-07	1.033472e-06
TCGA-DU-5849-01A-11D-1705-08	51	45	6	35	1.176471e-01	1	exome+100bp flanks	34834024	10	34	2.870756e-07	9.760572e-07
TCGA-DU-5851-01A-13D-1893-08	40	37	3	28	7.500000e-02	1	exome+100bp flanks	34834024	9	23	2.583681e-07	6.602740e-07
TCGA-DU-5852-01A-11D-1705-08	90	85	5	64	5.555556e-02	1	exome+100bp flanks	34834024	20	60	5.741513e-07	1.722454e-06
TCGA-DU-5853-01A-11D-1893-08	35	32	3	23	8.571429e-02	1	exome+100bp flanks	34834024	8	21	2.296605e-07	6.028589e-07
TCGA-DU-5854-01A-11D-1705-08	62	56	6	44	9.677419e-02	1	exome+100bp flanks	34834024	12	40	3.444908e-07	1.148303e-06
TCGA-DU-5855-01A-11D-1705-08	78	71	7	49	8.974359e-02	1	exome+100bp flanks	34834024	21	44	6.028589e-07	1.263133e-06
TCGA-DU-5870-01A-11D-1705-08	22	21	1	16	4.545455e-02	1	exome+100bp flanks	34834024	4	15	1.148303e-07	4.306135e-07
TCGA-DU-5871-01A-12D-1705-08	53	48	5	38	9.433962e-02	1	exome+100bp flanks	34834024	9	35	2.583681e-07	1.004765e-06
TCGA-DU-5872-01A-11D-1705-08	36	35	1	27	2.777778e-02	1	exome+100bp flanks	34834024	8	26	2.296605e-07	7.463967e-07
TCGA-DU-5874-01A-11D-1705-08	56	54	2	39	3.571429e-02	1	exome+100bp flanks	34834024	13	38	3.731983e-07	1.090887e-06
TCGA-DU-6392-01A-11D-1705-08	17160	16598	562	12452	3.275058e-02	1	exome+100bp flanks	34834024	3914	11796	1.123614e-04	3.386344e-04
TCGA-DU-6393-01A-11D-1705-08	45	40	5	30	1.111111e-01	1	exome+100bp flanks	34834024	10	28	2.870756e-07	8.038118e-07
TCGA-DU-6394-01A-11D-1705-08	49	44	5	37	1.020408e-01	1	exome+100bp flanks	34834024	7	34	2.009530e-07	9.760572e-07
TCGA-DU-6395-01A-12D-1705-08	39	31	8	22	2.051282e-01	1	exome+100bp flanks	34834024	9	21	2.583681e-07	6.028589e-07
TCGA-DU-6396-01A-11D-1705-08	56	51	5	38	8.928571e-02	1	exome+100bp flanks	34834024	13	37	3.731983e-07	1.062180e-06
TCGA-DU-6397-01A-11D-1705-08	43	40	3	34	6.976744e-02	1	exome+100bp flanks	34834024	6	33	1.722454e-07	9.473496e-07
TCGA-DU-6399-01A-12D-1705-08	76	71	5	49	6.578947e-02	1	exome+100bp flanks	34834024	21	49	6.028589e-07	1.406671e-06
TCGA-DU-6400-01A-12D-1705-08	60	57	3	44	5.000000e-02	1	exome+100bp flanks	34834024	11	40	3.157832e-07	1.148303e-06
TCGA-DU-6401-01A-11D-1705-08	33	31	2	25	6.060606e-02	1	exome+100bp flanks	34834024	6	23	1.722454e-07	6.602740e-07
TCGA-DU-6402-01A-11D-1705-08	65	60	5	47	7.692308e-02	1	exome+100bp flanks	34834024	12	43	3.444908e-07	1.234425e-06
TCGA-DU-6403-01A-11D-1705-08	71	67	4	55	5.633803e-02	1	exome+100bp flanks	34834024	11	51	3.157832e-07	1.464086e-06
TCGA-DU-6404-01A-11D-1705-08	16	13	3	10	1.875000e-01	1	exome+100bp flanks	34834024	3	10	8.612269e-08	2.870756e-07
TCGA-DU-6405-01A-11D-1705-08	69	65	4	51	5.797101e-02	1	exome+100bp flanks	34834024	13	50	3.731983e-07	1.435378e-06
TCGA-DU-6406-01A-11D-1705-08	9	6	3	6	3.333333e-01	1	exome+100bp flanks	34834024	0	6	0	1.722454e-07
TCGA-DU-6407-01A-13D-1705-08	35	34	1	23	2.857143e-02	1	exome+100bp flanks	34834024	11	22	3.157832e-07	6.315664e-07
TCGA-DU-6408-01A-11D-1705-08	38	35	3	27	7.894737e-02	1	exome+100bp flanks	34834024	7	25	2.009530e-07	7.176891e-07
TCGA-DU-6410-01A-11D-1893-08	60	55	5	42	8.333333e-02	1	exome+100bp flanks	34834024	12	39	3.444908e-07	1.119595e-06
TCGA-DU-6542-01A-11D-1893-08	42	38	4	28	9.523810e-02	1	exome+100bp flanks	34834024	10	25	2.870756e-07	7.176891e-07
TCGA-DU-7006-01A-11D-2024-08	80	73	7	63	8.750000e-02	1	exome+100bp flanks	34834024	8	59	2.296605e-07	1.693746e-06
TCGA-DU-7007-01A-11D-2024-08	52	48	4	36	7.692308e-02	1	exome+100bp flanks	34834024	12	34	3.444908e-07	9.760572e-07
TCGA-DU-7008-01A-11D-2024-08	43	40	3	29	6.976744e-02	1	exome+100bp flanks	34834024	10	27	2.870756e-07	7.751042e-07
TCGA-DU-7009-01A-11D-2024-08	32	27	5	21	1.562500e-01	1	exome+100bp flanks	34834024	5	19	1.435378e-07	5.454437e-07
TCGA-DU-7010-01A-11D-2024-08	114	111	3	89	2.631579e-02	0	coding only	34834024	20	87	5.741513e-07	2.497558e-06
TCGA-DU-7011-01A-11D-2024-08	25	19	6	16	2.400000e-01	1	exome+100bp flanks	34834024	3	16	8.612269e-08	4.593210e-07
TCGA-DU-7012-01A-11D-2024-08	83	78	5	52	6.024096e-02	1	exome+100bp flanks	34834024	25	47	7.176891e-07	1.349256e-06
TCGA-DU-7013-01A-11D-2024-08	44	41	3	28	6.818182e-02	1	exome+100bp flanks	34834024	13	27	3.731983e-07	7.751042e-07
TCGA-DU-7014-01A-11D-2024-08	43	41	2	30	4.651163e-02	1	exome+100bp flanks	34834024	11	30	3.157832e-07	8.612269e-07
TCGA-DU-7015-01A-11D-2024-08	47	40	7	34	1.489362e-01	1	exome+100bp flanks	34834024	5	32	1.435378e-07	9.186421e-07
TCGA-DU-7018-01A-11D-2024-08	52	46	6	33	1.153846e-01	1	exome+100bp flanks	34834024	13	33	3.731983e-07	9.473496e-07
TCGA-DU-7019-01A-11D-2024-08	51	48	3	37	5.882353e-02	1	exome+100bp flanks	34834024	10	36	2.870756e-07	1.033472e-06
TCGA-DU-7290-01A-11D-2024-08	45	42	3	33	6.666667e-02	1	exome+100bp flanks	34834024	8	31	2.296605e-07	8.899345e-07
TCGA-DU-7292-01A-11D-2024-08	62	57	5	38	8.064516e-02	1	exome+100bp flanks	34834024	19	36	5.454437e-07	1.033472e-06
TCGA-DU-7294-01A-11D-2024-08	40	36	4	22	1.000000e-01	1	exome+100bp flanks	34834024	14	20	4.019059e-07	5.741513e-07
TCGA-DU-7298-01A-11D-2024-08	52	50	2	42	3.846154e-02	1	exome+100bp flanks	34834024	8	40	2.296605e-07	1.148303e-06
TCGA-DU-7299-01A-21D-2024-08	44	40	4	36	9.090909e-02	1	exome+100bp flanks	34834024	4	35	1.148303e-07	1.004765e-06
TCGA-DU-7300-01A-21D-2086-08	77	71	6	56	7.792208e-02	1	exome+100bp flanks	34834024	13	54	3.731983e-07	1.550208e-06
TCGA-DU-7301-01A-11D-2086-08	49	45	4	37	8.163265e-02	1	exome+100bp flanks	34834024	8	35	2.296605e-07	1.004765e-06
TCGA-DU-7302-01A-11D-2086-08	65	57	8	54	1.230769e-01	1	exome+100bp flanks	34834024	3	50	8.612269e-08	1.435378e-06
TCGA-DU-7304-01A-12D-2086-08	53	48	5	39	9.433962e-02	1	exome+100bp flanks	34834024	8	38	2.296605e-07	1.090887e-06
TCGA-DU-7306-01A-11D-2086-08	88	84	4	63	4.545455e-02	1	exome+100bp flanks	34834024	20	57	5.741513e-07	1.636331e-06
TCGA-DU-7309-01A-11D-2086-08	67	65	2	52	2.985075e-02	0	coding only	34834024	13	48	3.731983e-07	1.377963e-06
TCGA-DU-8158-01A-11D-2253-08	52	51	1	41	1.923077e-02	0	coding only	34834024	9	39	2.583681e-07	1.119595e-06
TCGA-DU-8161-01A-11D-2253-08	64	62	2	44	3.125000e-02	1	exome+100bp flanks	34834024	18	42	5.167362e-07	1.205718e-06
TCGA-DU-8162-01A-21D-2253-08	64	42	22	28	3.437500e-01	2	all capture (no interval list)	65505363	14	26	2.137230e-07	3.969141e-07
TCGA-DU-8163-01A-11D-2253-08	44	39	5	22	1.136364e-01	1	exome+100bp flanks	34834024	17	20	4.880286e-07	5.741513e-07
TCGA-DU-8164-01A-11D-2253-08	47	43	4	38	8.510638e-02	1	exome+100bp flanks	34834024	5	32	1.435378e-07	9.186421e-07
TCGA-DU-8165-01A-11D-2253-08	87	80	7	62	8.045977e-02	1	exome+100bp flanks	34834024	16	58	4.593210e-07	1.665039e-06
TCGA-DU-8166-01A-11D-2253-08	56	52	4	41	7.142857e-02	1	exome+100bp flanks	34834024	10	41	2.870756e-07	1.177010e-06
TCGA-DU-8167-01A-11D-2253-08	91	85	6	53	6.593407e-02	1	exome+100bp flanks	34834024	31	53	8.899345e-07	1.521501e-06
TCGA-DU-8168-01A-11D-2253-08	100	94	6	66	6.000000e-02	1	exome+100bp flanks	34834024	27	65	7.751042e-07	1.865992e-06
TCGA-DU-A5TP-01A-11D-A289-08	41	38	3	28	7.317073e-02	1	exome+100bp flanks	34834024	9	28	2.583681e-07	8.038118e-07
TCGA-DU-A5TR-01A-11D-A289-08	56	54	2	47	3.571429e-02	1	exome+100bp flanks	34834024	5	43	1.435378e-07	1.234425e-06
TCGA-DU-A5TS-01A-11D-A289-08	60	56	4	43	6.666667e-02	1	exome+100bp flanks	34834024	12	37	3.444908e-07	1.062180e-06
TCGA-DU-A5TT-01A-11D-A289-08	66	62	4	46	6.060606e-02	1	exome+100bp flanks	34834024	16	43	4.593210e-07	1.234425e-06
TCGA-DU-A5TU-01A-11D-A289-08	76	70	6	57	7.894737e-02	1	exome+100bp flanks	34834024	11	57	3.157832e-07	1.636331e-06
TCGA-DU-A5TW-01A-11D-A289-08	77	71	6	51	7.792208e-02	1	exome+100bp flanks	34834024	20	48	5.741513e-07	1.377963e-06
TCGA-DU-A5TY-01A-11D-A289-08	96	91	5	71	5.208333e-02	1	exome+100bp flanks	34834024	19	65	5.454437e-07	1.865992e-06
TCGA-DU-A6S2-01A-21D-A32B-08	25	21	4	16	1.600000e-01	1	exome+100bp flanks	34834024	5	14	1.435378e-07	4.019059e-07
TCGA-DU-A6S3-01A-12D-A32B-08	42	40	2	33	4.761905e-02	1	exome+100bp flanks	34834024	7	32	2.009530e-07	9.186421e-07
TCGA-DU-A6S6-01A-21D-A32B-08	25	21	4	17	1.600000e-01	1	exome+100bp flanks	34834024	4	17	1.148303e-07	4.880286e-07
TCGA-DU-A6S7-01A-21D-A32B-08	46	38	8	30	1.739130e-01	1	exome+100bp flanks	34834024	8	27	2.296605e-07	7.751042e-07
TCGA-DU-A6S8-01A-12D-A32B-08	72	66	6	55	8.333333e-02	1	exome+100bp flanks	34834024	9	51	2.583681e-07	1.464086e-06
TCGA-DU-A76K-01A-11D-A33T-08	89	81	8	63	8.988764e-02	1	exome+100bp flanks	34834024	18	60	5.167362e-07	1.722454e-06
TCGA-DU-A76L-01A-11D-A32B-08	51	48	3	38	5.882353e-02	1	exome+100bp flanks	34834024	10	35	2.870756e-07	1.004765e-06
TCGA-DU-A76O-01A-11D-A32B-08	41	37	4	28	9.756098e-02	1	exome+100bp flanks	34834024	8	27	2.296605e-07	7.751042e-07
TCGA-DU-A76R-01A-11D-A32B-08	55	52	3	40	5.454545e-02	1	exome+100bp flanks	34834024	11	40	3.157832e-07	1.148303e-06
TCGA-DU-A7T6-01A-11D-A33T-08	149	141	8	120	5.369128e-02	1	exome+100bp flanks	34834024	20	116	5.741513e-07	3.330078e-06
TCGA-DU-A7T8-01A-21D-A34J-08	25	23	2	20	8.000000e-02	1	exome+100bp flanks	34834024	2	20	5.741513e-08	5.741513e-07
TCGA-DU-A7TA-01A-11D-A33T-08	68	64	4	55	5.882353e-02	1	exome+100bp flanks	34834024	9	52	2.583681e-07	1.492793e-06
TCGA-DU-A7TB-01A-11D-A33T-08	50	46	4	37	8.000000e-02	1	exome+100bp flanks	34834024	8	35	2.296605e-07	1.004765e-06
TCGA-DU-A7TC-01A-21D-A34J-08	40	37	3	31	7.500000e-02	1	exome+100bp flanks	34834024	5	31	1.435378e-07	8.899345e-07
TCGA-DU-A7TD-01A-12D-A34A-08	60	58	2	41	3.333333e-02	1	exome+100bp flanks	34834024	16	40	4.593210e-07	1.148303e-06
TCGA-DU-A7TG-01A-21D-A34J-08	17	16	1	12	5.882353e-02	1	exome+100bp flanks	34834024	3	12	8.612269e-08	3.444908e-07
TCGA-DU-A7TI-01A-11D-A33T-08	30	28	2	22	6.666667e-02	1	exome+100bp flanks	34834024	6	21	1.722454e-07	6.028589e-07
TCGA-DU-A7TJ-01A-11D-A34J-08	57	50	7	36	1.228070e-01	1	exome+100bp flanks	34834024	14	34	4.019059e-07	9.760572e-07
TCGA-E1-5302-01A-01D-1468-08	66	62	4	47	6.060606e-02	1	exome+100bp flanks	34834024	15	41	4.306135e-07	1.177010e-06
TCGA-E1-5303-01A-01D-1468-08	42	37	5	31	1.190476e-01	1	exome+100bp flanks	34834024	5	30	1.435378e-07	8.612269e-07
TCGA-E1-5304-01A-01D-1468-08	46	39	7	32	1.521739e-01	1	exome+100bp flanks	34834024	7	31	2.009530e-07	8.899345e-07
TCGA-E1-5305-01A-01D-1893-08	44	41	3	37	6.818182e-02	1	exome+100bp flanks	34834024	3	33	8.612269e-08	9.473496e-07
TCGA-E1-5307-01A-01D-1893-08	101	94	7	70	6.930693e-02	1	exome+100bp flanks	34834024	22	69	6.315664e-07	1.980822e-06
TCGA-E1-5311-01A-01D-1468-08	41	34	7	27	1.707317e-01	1	exome+100bp flanks	34834024	7	25	2.009530e-07	7.176891e-07
TCGA-E1-5318-01A-01D-1468-08	49	43	6	37	1.224490e-01	1	exome+100bp flanks	34834024	6	37	1.722454e-07	1.062180e-06
TCGA-E1-5319-01A-01D-1893-08	64	53	11	40	1.718750e-01	1	exome+100bp flanks	34834024	13	36	3.731983e-07	1.033472e-06
TCGA-E1-5322-01A-01D-1468-08	57	48	9	38	1.578947e-01	1	exome+100bp flanks	34834024	10	33	2.870756e-07	9.473496e-07
TCGA-E1-A7YD-01A-11D-A34A-08	81	73	8	55	9.876543e-02	1	exome+100bp flanks	34834024	17	53	4.880286e-07	1.521501e-06
TCGA-E1-A7YE-01A-11D-A34A-08	94	88	6	65	6.382979e-02	1	exome+100bp flanks	34834024	22	61	6.315664e-07	1.751161e-06
TCGA-E1-A7YH-01A-11D-A34A-08	42	36	6	28	1.428571e-01	1	exome+100bp flanks	34834024	8	27	2.296605e-07	7.751042e-07
TCGA-E1-A7YI-01A-11D-A34A-08	58	56	2	48	3.448276e-02	1	exome+100bp flanks	34834024	8	45	2.296605e-07	1.291840e-06
TCGA-E1-A7YJ-01A-11D-A34A-08	60	56	4	36	6.666667e-02	1	exome+100bp flanks	34834024	19	35	5.454437e-07	1.004765e-06
TCGA-E1-A7YK-01A-11D-A34A-08	69	65	4	51	5.797101e-02	1	exome+100bp flanks	34834024	13	50	3.731983e-07	1.435378e-06
TCGA-E1-A7YL-01A-11D-A34A-08	80	73	7	57	8.750000e-02	1	exome+100bp flanks	34834024	13	55	3.731983e-07	1.578916e-06
TCGA-E1-A7YM-01A-11D-A34A-08	62	60	2	41	3.225806e-02	1	exome+100bp flanks	34834024	19	39	5.454437e-07	1.119595e-06
TCGA-E1-A7YN-01A-11D-A34A-08	89	84	5	59	5.617978e-02	1	exome+100bp flanks	34834024	23	59	6.602740e-07	1.693746e-06
TCGA-E1-A7YO-01A-11D-A34A-08	44	40	4	31	9.090909e-02	1	exome+100bp flanks	34834024	9	30	2.583681e-07	8.612269e-07
TCGA-E1-A7YQ-01A-11D-A34J-08	49	46	3	37	6.122449e-02	1	exome+100bp flanks	34834024	8	33	2.296605e-07	9.473496e-07
TCGA-E1-A7YS-01A-11D-A34A-08	77	67	10	52	1.298701e-01	1	exome+100bp flanks	34834024	13	48	3.731983e-07	1.377963e-06
TCGA-E1-A7YU-01A-11D-A34J-08	36	30	6	23	1.666667e-01	1	exome+100bp flanks	34834024	6	22	1.722454e-07	6.315664e-07
TCGA-E1-A7YV-01A-11D-A34J-08	58	58	0	40	0	0	coding only	34834024	15	36	4.306135e-07	1.033472e-06
TCGA-E1-A7YW-01A-11D-A34J-08	33	32	1	23	3.030303e-02	1	exome+100bp flanks	34834024	9	20	2.583681e-07	5.741513e-07
TCGA-E1-A7YY-01A-11D-A34J-08	17	17	0	14	0	1	exome+100bp flanks	34834024	3	13	8.612269e-08	3.731983e-07
TCGA-E1-A7Z2-01A-21D-A34J-08	45	42	3	29	6.666667e-02	1	exome+100bp flanks	34834024	13	26	3.731983e-07	7.463967e-07
TCGA-E1-A7Z3-01A-11D-A34J-08	44	40	4	29	9.090909e-02	1	exome+100bp flanks	34834024	9	28	2.583681e-07	8.038118e-07
TCGA-E1-A7Z4-01A-11D-A34J-08	32	30	2	22	6.250000e-02	1	exome+100bp flanks	34834024	6	20	1.722454e-07	5.741513e-07
TCGA-E1-A7Z6-01A-11D-A34J-08	32	30	2	21	6.250000e-02	1	exome+100bp flanks	34834024	9	18	2.583681e-07	5.167362e-07
TCGA-EZ-7264-01A-11D-2024-08	42	37	5	30	1.190476e-01	1	exome+100bp flanks	34834024	7	29	2.009530e-07	8.325194e-07
TCGA-F6-A8O3-01A-11D-A36O-08	34	30	4	24	1.176471e-01	1	exome+100bp flanks	34834024	6	24	1.722454e-07	6.889816e-07
TCGA-F6-A8O4-01A-11D-A36O-08	46	44	2	34	4.347826e-02	1	exome+100bp flanks	34834024	8	32	2.296605e-07	9.186421e-07
TCGA-FG-5962-01B-11D-1893-08	56	51	5	43	8.928571e-02	1	exome+100bp flanks	34834024	7	41	2.009530e-07	1.177010e-06
TCGA-FG-5963-01A-11D-1705-08	38	35	3	32	7.894737e-02	1	exome+100bp flanks	34834024	3	31	8.612269e-08	8.899345e-07
TCGA-FG-5964-01A-11D-1705-08	55	52	3	45	5.454545e-02	1	exome+100bp flanks	34834024	7	43	2.009530e-07	1.234425e-06
TCGA-FG-5965-01B-11D-1893-08	56	52	4	41	7.142857e-02	1	exome+100bp flanks	34834024	11	41	3.157832e-07	1.177010e-06
TCGA-FG-6688-01A-11D-1893-08	92	86	6	64	6.521739e-02	1	exome+100bp flanks	34834024	21	58	6.028589e-07	1.665039e-06
TCGA-FG-6689-01A-11D-1893-08	38	34	4	29	1.052632e-01	1	exome+100bp flanks	34834024	4	26	1.148303e-07	7.463967e-07
TCGA-FG-6690-01A-11D-1893-08	51	48	3	38	5.882353e-02	1	exome+100bp flanks	34834024	10	38	2.870756e-07	1.090887e-06
TCGA-FG-6691-01A-11D-1893-08	17	16	1	15	5.882353e-02	1	exome+100bp flanks	34834024	1	15	2.870756e-08	4.306135e-07
TCGA-FG-6692-01A-11D-1893-08	100	94	6	64	6.000000e-02	1	exome+100bp flanks	34834024	29	61	8.325194e-07	1.751161e-06
TCGA-FG-7634-01A-11D-2086-08	32	31	1	23	3.125000e-02	1	exome+100bp flanks	34834024	8	21	2.296605e-07	6.028589e-07
TCGA-FG-7636-01A-11D-2086-08	67	64	3	51	4.477612e-02	1	exome+100bp flanks	34834024	13	49	3.731983e-07	1.406671e-06
TCGA-FG-7637-01A-11D-2086-08	47	43	4	33	8.510638e-02	1	exome+100bp flanks	34834024	10	31	2.870756e-07	8.899345e-07
TCGA-FG-7638-01B-11D-2086-08	33	32	1	19	3.030303e-02	1	exome+100bp flanks	34834024	13	19	3.731983e-07	5.454437e-07
TCGA-FG-7641-01B-11D-2253-08	48	41	7	33	1.458333e-01	1	exome+100bp flanks	34834024	7	33	2.009530e-07	9.473496e-07
TCGA-FG-7643-01A-11D-2086-08	88	82	6	56	6.818182e-02	1	exome+100bp flanks	34834024	24	54	6.889816e-07	1.550208e-06
TCGA-FG-8181-01A-11D-2253-08	7	5	2	3	2.857143e-01	1	exome+100bp flanks	34834024	2	3	5.741513e-08	8.612269e-08
TCGA-FG-8182-01A-11D-2253-08	48	44	4	32	8.333333e-02	1	exome+100bp flanks	34834024	12	29	3.444908e-07	8.325194e-07
TCGA-FG-8185-01A-11D-2253-08	62	61	1	41	1.612903e-02	0	coding only	34834024	20	39	5.741513e-07	1.119595e-06
TCGA-FG-8186-01A-11D-2253-08	56	51	5	39	8.928571e-02	1	exome+100bp flanks	34834024	10	36	2.870756e-07	1.033472e-06
TCGA-FG-8187-01A-11D-2253-08	24	23	1	16	4.166667e-02	1	exome+100bp flanks	34834024	6	16	1.722454e-07	4.593210e-07
TCGA-FG-8188-01A-11D-2253-08	56	49	7	34	1.250000e-01	1	exome+100bp flanks	34834024	14	33	4.019059e-07	9.473496e-07
TCGA-FG-8189-01B-11D-A289-08	22	20	2	10	9.090909e-02	1	exome+100bp flanks	34834024	8	10	2.296605e-07	2.870756e-07
TCGA-FG-8191-01A-11D-2253-08	40	33	7	25	1.750000e-01	1	exome+100bp flanks	34834024	7	24	2.009530e-07	6.889816e-07
TCGA-FG-A4MT-01A-11D-A26M-08	25	22	3	19	1.200000e-01	1	exome+100bp flanks	34834024	3	18	8.612269e-08	5.167362e-07
TCGA-FG-A4MU-01B-11D-A289-08	84	80	4	55	4.761905e-02	1	exome+100bp flanks	34834024	25	51	7.176891e-07	1.464086e-06
TCGA-FG-A4MW-01A-11D-A26M-08	93	91	2	58	2.150538e-02	0	coding only	34834024	31	55	8.899345e-07	1.578916e-06
TCGA-FG-A4MX-01A-11D-A26M-08	28	25	3	23	1.071429e-01	1	exome+100bp flanks	34834024	2	19	5.741513e-08	5.454437e-07
TCGA-FG-A4MY-01A-11D-A26M-08	45	37	8	31	1.777778e-01	1	exome+100bp flanks	34834024	6	31	1.722454e-07	8.899345e-07
TCGA-FG-A60J-01A-11D-A289-08	60	56	4	44	6.666667e-02	1	exome+100bp flanks	34834024	11	44	3.157832e-07	1.263133e-06
TCGA-FG-A60K-01A-11D-A29Q-08	31	30	1	27	3.225806e-02	1	exome+100bp flanks	34834024	3	27	8.612269e-08	7.751042e-07
TCGA-FG-A60L-01A-12D-A31L-08	36	34	2	31	5.555556e-02	1	exome+100bp flanks	34834024	3	29	8.612269e-08	8.325194e-07
TCGA-FG-A6IZ-01A-11D-A31L-08	96	90	6	70	6.250000e-02	1	exome+100bp flanks	34834024	20	65	5.741513e-07	1.865992e-06
TCGA-FG-A6J1-01A-11D-A31L-08	46	44	2	29	4.347826e-02	1	exome+100bp flanks	34834024	15	26	4.306135e-07	7.463967e-07
TCGA-FG-A6J3-01A-11D-A31L-08	105	94	11	73	1.047619e-01	1	exome+100bp flanks	34834024	21	69	6.028589e-07	1.980822e-06
TCGA-FG-A70Y-01A-12D-A34J-08	33	31	2	23	6.060606e-02	1	exome+100bp flanks	34834024	7	21	2.009530e-07	6.028589e-07
TCGA-FG-A70Z-01A-12D-A33T-08	80	71	9	49	1.125000e-01	1	exome+100bp flanks	34834024	21	46	6.028589e-07	1.320548e-06
TCGA-FG-A710-01A-12D-A33T-08	73	66	7	50	9.589041e-02	1	exome+100bp flanks	34834024	16	45	4.593210e-07	1.291840e-06
TCGA-FG-A711-01A-21D-A33T-08	71	68	3	47	4.225352e-02	1	exome+100bp flanks	34834024	20	44	5.741513e-07	1.263133e-06
TCGA-FG-A713-01A-11D-A32B-08	43	41	2	29	4.651163e-02	1	exome+100bp flanks	34834024	11	28	3.157832e-07	8.038118e-07
TCGA-FG-A87N-01A-11D-A36O-08	42	41	1	30	2.380952e-02	1	exome+100bp flanks	34834024	11	30	3.157832e-07	8.612269e-07
TCGA-FG-A87Q-01A-11D-A36O-08	86	79	7	58	8.139535e-02	1	exome+100bp flanks	34834024	20	58	5.741513e-07	1.665039e-06
TCGA-FN-7833-01A-11D-2086-08	35	32	3	27	8.571429e-02	1	exome+100bp flanks	34834024	5	25	1.435378e-07	7.176891e-07
TCGA-HT-7467-01A-11D-2024-08	40	37	3	30	7.500000e-02	1	exome+100bp flanks	34834024	7	29	2.009530e-07	8.325194e-07
TCGA-HT-7468-01A-11D-2024-08	22	19	3	17	1.363636e-01	1	exome+100bp flanks	34834024	2	16	5.741513e-08	4.593210e-07
TCGA-HT-7469-01A-11D-2253-08	59	56	3	38	5.084746e-02	1	exome+100bp flanks	34834024	18	36	5.167362e-07	1.033472e-06
TCGA-HT-7470-01A-12D-2086-08	62	59	3	43	4.838710e-02	1	exome+100bp flanks	34834024	16	42	4.593210e-07	1.205718e-06
TCGA-HT-7471-01A-11D-2253-08	34	31	3	21	8.823529e-02	1	exome+100bp flanks	34834024	9	20	2.583681e-07	5.741513e-07
TCGA-HT-7472-01A-11D-2024-08	32	26	6	18	1.875000e-01	1	exome+100bp flanks	34834024	8	18	2.296605e-07	5.167362e-07
TCGA-HT-7473-01A-11D-2024-08	26	24	2	20	7.692308e-02	1	exome+100bp flanks	34834024	4	19	1.148303e-07	5.454437e-07
TCGA-HT-7474-01A-11D-2024-08	33	29	4	21	1.212121e-01	1	exome+100bp flanks	34834024	8	20	2.296605e-07	5.741513e-07
TCGA-HT-7475-01A-11D-2024-08	64	57	7	44	1.093750e-01	1	exome+100bp flanks	34834024	11	39	3.157832e-07	1.119595e-06
TCGA-HT-7476-01A-11D-2024-08	30	25	5	21	1.666667e-01	1	exome+100bp flanks	34834024	3	21	8.612269e-08	6.028589e-07
TCGA-HT-7477-01B-11D-A289-08	72	66	6	48	8.333333e-02	1	exome+100bp flanks	34834024	17	47	4.880286e-07	1.349256e-06
TCGA-HT-7478-01A-11D-2024-08	35	33	2	28	5.714286e-02	1	exome+100bp flanks	34834024	3	27	8.612269e-08	7.751042e-07
TCGA-HT-7479-01A-11D-2024-08	37	29	8	23	2.162162e-01	1	exome+100bp flanks	34834024	5	19	1.435378e-07	5.454437e-07
TCGA-HT-7480-01A-11D-2086-08	43	39	4	29	9.302326e-02	1	exome+100bp flanks	34834024	9	29	2.583681e-07	8.325194e-07
TCGA-HT-7481-01A-11D-2024-08	34	33	1	31	2.941176e-02	1	exome+100bp flanks	34834024	2	31	5.741513e-08	8.899345e-07
TCGA-HT-7482-01A-11D-2024-08	22	21	1	16	4.545455e-02	1	exome+100bp flanks	34834024	5	15	1.435378e-07	4.306135e-07
TCGA-HT-7483-01A-11D-2024-08	19	18	1	15	5.263158e-02	1	exome+100bp flanks	34834024	2	14	5.741513e-08	4.019059e-07
TCGA-HT-7485-01A-11D-2024-08	18	16	2	14	1.111111e-01	1	exome+100bp flanks	34834024	2	14	5.741513e-08	4.019059e-07
TCGA-HT-7601-01A-11D-2086-08	38	35	3	26	7.894737e-02	1	exome+100bp flanks	34834024	9	25	2.583681e-07	7.176891e-07
TCGA-HT-7602-01A-21D-2086-08	25	21	4	16	1.600000e-01	1	exome+100bp flanks	34834024	5	15	1.435378e-07	4.306135e-07
TCGA-HT-7603-01A-21D-2086-08	41	38	3	29	7.317073e-02	1	exome+100bp flanks	34834024	7	25	2.009530e-07	7.176891e-07
TCGA-HT-7604-01A-11D-2086-08	61	58	3	41	4.918033e-02	1	exome+100bp flanks	34834024	17	39	4.880286e-07	1.119595e-06
TCGA-HT-7605-01A-11D-2086-08	60	58	2	45	3.333333e-02	1	exome+100bp flanks	34834024	12	43	3.444908e-07	1.234425e-06
TCGA-HT-7606-01A-11D-2086-08	39	38	1	23	2.564103e-02	1	exome+100bp flanks	34834024	14	23	4.019059e-07	6.602740e-07
TCGA-HT-7607-01A-11D-2086-08	47	39	8	31	1.702128e-01	1	exome+100bp flanks	34834024	8	29	2.296605e-07	8.325194e-07
TCGA-HT-7608-01A-11D-2086-08	41	36	5	26	1.219512e-01	1	exome+100bp flanks	34834024	9	22	2.583681e-07	6.315664e-07
TCGA-HT-7609-01A-11D-2086-08	45	43	2	32	4.444444e-02	1	exome+100bp flanks	34834024	11	30	3.157832e-07	8.612269e-07
TCGA-HT-7610-01A-21D-2086-08	22	20	2	15	9.090909e-02	1	exome+100bp flanks	34834024	5	15	1.435378e-07	4.306135e-07
TCGA-HT-7611-01A-11D-2395-08	41	34	7	28	1.707317e-01	1	exome+100bp flanks	34834024	6	27	1.722454e-07	7.751042e-07
TCGA-HT-7616-01A-11D-2253-08	70	62	8	50	1.142857e-01	1	exome+100bp flanks	34834024	11	49	3.157832e-07	1.406671e-06
TCGA-HT-7620-01A-11D-2253-08	32	25	7	21	2.187500e-01	1	exome+100bp flanks	34834024	3	20	8.612269e-08	5.741513e-07
TCGA-HT-7676-01A-11D-2395-08	26	24	2	18	7.692308e-02	1	exome+100bp flanks	34834024	5	17	1.435378e-07	4.880286e-07
TCGA-HT-7677-01A-11D-2253-08	57	53	4	43	7.017544e-02	1	exome+100bp flanks	34834024	7	41	2.009530e-07	1.177010e-06
TCGA-HT-7680-01A-11D-2253-08	12	11	1	6	8.333333e-02	1	exome+100bp flanks	34834024	4	6	1.148303e-07	1.722454e-07
TCGA-HT-7681-01A-11D-2395-08	22	20	2	15	9.090909e-02	1	exome+100bp flanks	34834024	5	13	1.435378e-07	3.731983e-07
TCGA-HT-7684-01A-11D-2253-08	46	41	5	33	1.086957e-01	1	exome+100bp flanks	34834024	8	32	2.296605e-07	9.186421e-07
TCGA-HT-7686-01A-11D-2253-08	32	29	3	22	9.375000e-02	1	exome+100bp flanks	34834024	6	22	1.722454e-07	6.315664e-07
TCGA-HT-7687-01A-11D-2253-08	84	76	8	54	9.523810e-02	1	exome+100bp flanks	34834024	22	47	6.315664e-07	1.349256e-06
TCGA-HT-7688-01A-11D-2253-08	161	144	17	110	1.055901e-01	1	exome+100bp flanks	34834024	31	106	8.899345e-07	3.043002e-06
TCGA-HT-7689-01A-11D-2253-08	88	84	4	64	4.545455e-02	1	exome+100bp flanks	34834024	18	60	5.167362e-07	1.722454e-06
TCGA-HT-7690-01A-11D-2253-08	32	32	0	27	0	1	exome+100bp flanks	34834024	3	27	8.612269e-08	7.751042e-07
TCGA-HT-7691-01A-11D-2253-08	18	18	0	12	0	1	exome+100bp flanks	34834024	5	12	1.435378e-07	3.444908e-07
TCGA-HT-7692-01A-12D-2253-08	36	35	1	25	2.777778e-02	1	exome+100bp flanks	34834024	9	23	2.583681e-07	6.602740e-07
TCGA-HT-7693-01A-11D-2253-08	59	52	7	40	1.186441e-01	1	exome+100bp flanks	34834024	10	37	2.870756e-07	1.062180e-06
TCGA-HT-7694-01A-11D-2253-08	55	52	3	41	5.454545e-02	1	exome+100bp flanks	34834024	11	38	3.157832e-07	1.090887e-06
TCGA-HT-7695-01A-11D-2253-08	37	34	3	20	8.108108e-02	1	exome+100bp flanks	34834024	14	19	4.019059e-07	5.454437e-07
TCGA-HT-7854-01A-11D-2253-08	44	43	1	30	2.272727e-02	1	exome+100bp flanks	34834024	13	28	3.731983e-07	8.038118e-07
TCGA-HT-7855-01A-11D-2395-08	52	47	5	38	9.615385e-02	1	exome+100bp flanks	34834024	9	38	2.583681e-07	1.090887e-06
TCGA-HT-7856-01A-11D-2395-08	22	20	2	13	9.090909e-02	1	exome+100bp flanks	34834024	6	13	1.722454e-07	3.731983e-07
TCGA-HT-7857-01A-11D-2395-08	39	25	14	19	3.589744e-01	2	all capture (no interval list)	65505363	4	17	6.106370e-08	2.595207e-07
TCGA-HT-7858-01A-11D-2395-08	26	23	3	17	1.153846e-01	1	exome+100bp flanks	34834024	6	17	1.722454e-07	4.880286e-07
TCGA-HT-7860-01A-11D-2395-08	99	90	9	64	9.090909e-02	1	exome+100bp flanks	34834024	25	59	7.176891e-07	1.693746e-06
TCGA-HT-7873-01B-11D-2395-08	41	36	5	27	1.219512e-01	1	exome+100bp flanks	34834024	8	27	2.296605e-07	7.751042e-07
TCGA-HT-7874-01A-11D-2395-08	33	31	2	25	6.060606e-02	1	exome+100bp flanks	34834024	6	23	1.722454e-07	6.602740e-07
TCGA-HT-7875-01A-11D-2395-08	66	54	12	42	1.818182e-01	1	exome+100bp flanks	34834024	12	39	3.444908e-07	1.119595e-06
TCGA-HT-7877-01A-11D-2395-08	21	20	1	13	4.761905e-02	1	exome+100bp flanks	34834024	7	13	2.009530e-07	3.731983e-07
TCGA-HT-7879-01A-11D-2395-08	21	18	3	15	1.428571e-01	1	exome+100bp flanks	34834024	2	13	5.741513e-08	3.731983e-07
TCGA-HT-7880-01A-11D-2395-08	20	19	1	16	5.000000e-02	1	exome+100bp flanks	34834024	3	16	8.612269e-08	4.593210e-07
TCGA-HT-7881-01A-11D-2395-08	34	26	8	15	2.352941e-01	1	exome+100bp flanks	34834024	9	14	2.583681e-07	4.019059e-07
TCGA-HT-7882-01A-11D-2395-08	65	59	6	42	9.230769e-02	1	exome+100bp flanks	34834024	16	39	4.593210e-07	1.119595e-06
TCGA-HT-7884-01B-11D-2395-08	50	48	2	36	4.000000e-02	1	exome+100bp flanks	34834024	11	32	3.157832e-07	9.186421e-07
TCGA-HT-7902-01A-12D-2395-08	45	42	3	36	6.666667e-02	1	exome+100bp flanks	34834024	4	35	1.148303e-07	1.004765e-06
TCGA-HT-8010-01A-11D-2395-08	18	18	0	14	0	1	exome+100bp flanks	34834024	3	12	8.612269e-08	3.444908e-07
TCGA-HT-8011-01A-11D-2395-08	59	56	3	41	5.084746e-02	1	exome+100bp flanks	34834024	13	39	3.731983e-07	1.119595e-06
TCGA-HT-8012-01A-11D-2395-08	47	42	5	31	1.063830e-01	1	exome+100bp flanks	34834024	11	28	3.157832e-07	8.038118e-07
TCGA-HT-8013-01A-11D-2395-08	38	33	5	28	1.315789e-01	1	exome+100bp flanks	34834024	3	26	8.612269e-08	7.463967e-07
TCGA-HT-8015-01B-11D-A289-08	14	13	1	11	7.142857e-02	1	exome+100bp flanks	34834024	1	10	2.870756e-08	2.870756e-07
TCGA-HT-8018-01A-11D-2395-08	28	25	3	24	1.071429e-01	1	exome+100bp flanks	34834024	1	23	2.870756e-08	6.602740e-07
TCGA-HT-8019-01A-21D-2395-08	3	2	1	1	3.333333e-01	1	exome+100bp flanks	34834024	0	1	0	2.870756e-08
TCGA-HT-8104-01A-11D-2395-08	106	100	6	79	5.660377e-02	1	exome+100bp flanks	34834024	21	76	6.028589e-07	2.181775e-06
TCGA-HT-8105-01A-11D-2395-08	82	72	10	57	1.219512e-01	1	exome+100bp flanks	34834024	15	54	4.306135e-07	1.550208e-06
TCGA-HT-8106-01A-11D-2395-08	55	51	4	36	7.272727e-02	1	exome+100bp flanks	34834024	15	35	4.306135e-07	1.004765e-06
TCGA-HT-8107-01A-13D-2395-08	8	7	1	4	1.250000e-01	1	exome+100bp flanks	34834024	3	4	8.612269e-08	1.148303e-07
TCGA-HT-8108-01A-11D-2395-08	27	24	3	17	1.111111e-01	1	exome+100bp flanks	34834024	6	16	1.722454e-07	4.593210e-07
TCGA-HT-8109-01A-11D-2395-08	51	45	6	33	1.176471e-01	1	exome+100bp flanks	34834024	12	28	3.444908e-07	8.038118e-07
TCGA-HT-8110-01A-11D-2395-08	53	47	6	32	1.132075e-01	1	exome+100bp flanks	34834024	14	31	4.019059e-07	8.899345e-07
TCGA-HT-8111-01A-11D-2395-08	24	22	2	17	8.333333e-02	1	exome+100bp flanks	34834024	4	16	1.148303e-07	4.593210e-07
TCGA-HT-8113-01A-11D-2395-08	38	32	6	23	1.578947e-01	1	exome+100bp flanks	34834024	8	21	2.296605e-07	6.028589e-07
TCGA-HT-8114-01A-11D-2395-08	29	23	6	18	2.068966e-01	1	exome+100bp flanks	34834024	4	17	1.148303e-07	4.880286e-07
TCGA-HT-8558-01A-21D-2395-08	5	3	2	3	4.000000e-01	1	exome+100bp flanks	34834024	0	3	0	8.612269e-08
TCGA-HT-8563-01A-11D-2395-08	36	34	2	22	5.555556e-02	1	exome+100bp flanks	34834024	11	19	3.157832e-07	5.454437e-07
TCGA-HT-8564-01A-11D-2395-08	700	662	38	461	5.428571e-02	1	exome+100bp flanks	34834024	193	424	5.540560e-06	1.217201e-05
TCGA-HT-A4DS-01A-11D-A26M-08	45	42	3	33	6.666667e-02	1	exome+100bp flanks	34834024	8	31	2.296605e-07	8.899345e-07
TCGA-HT-A4DV-01A-11D-A26M-08	24	20	4	15	1.666667e-01	1	exome+100bp flanks	34834024	5	15	1.435378e-07	4.306135e-07
TCGA-HT-A5R5-01A-11D-A289-08	53	47	6	35	1.132075e-01	1	exome+100bp flanks	34834024	11	34	3.157832e-07	9.760572e-07
TCGA-HT-A5R7-01A-11D-A289-08	58	57	1	44	1.724138e-02	0	coding only	34834024	9	41	2.583681e-07	1.177010e-06
TCGA-HT-A5R9-01A-11D-A289-08	63	61	2	52	3.174603e-02	1	exome+100bp flanks	34834024	8	48	2.296605e-07	1.377963e-06
TCGA-HT-A5RA-01A-11D-A289-08	81	73	8	47	9.876543e-02	1	exome+100bp flanks	34834024	22	44	6.315664e-07	1.263133e-06
TCGA-HT-A5RB-01A-11D-A289-08	40	35	5	29	1.250000e-01	1	exome+100bp flanks	34834024	5	29	1.435378e-07	8.325194e-07
TCGA-HT-A5RC-01A-11D-A289-08	81	70	11	54	1.358025e-01	1	exome+100bp flanks	34834024	15	50	4.306135e-07	1.435378e-06
TCGA-HT-A614-01A-11D-A29Q-08	49	47	2	37	4.081633e-02	1	exome+100bp flanks	34834024	10	36	2.870756e-07	1.033472e-06
TCGA-HT-A615-01A-11D-A29Q-08	46	42	4	35	8.695652e-02	1	exome+100bp flanks	34834024	6	35	1.722454e-07	1.004765e-06
TCGA-HT-A616-01A-11D-A29Q-08	43	41	2	27	4.651163e-02	1	exome+100bp flanks	34834024	13	26	3.731983e-07	7.463967e-07
TCGA-HT-A617-01A-11D-A29Q-08	32	29	3	19	9.375000e-02	1	exome+100bp flanks	34834024	10	18	2.870756e-07	5.167362e-07
TCGA-HT-A618-01A-11D-A29Q-08	36	35	1	24	2.777778e-02	1	exome+100bp flanks	34834024	11	24	3.157832e-07	6.889816e-07
TCGA-HT-A619-01A-11D-A29Q-08	76	71	5	52	6.578947e-02	1	exome+100bp flanks	34834024	17	50	4.880286e-07	1.435378e-06
TCGA-HT-A61A-01A-11D-A29Q-08	16	15	1	12	6.250000e-02	1	exome+100bp flanks	34834024	3	12	8.612269e-08	3.444908e-07
TCGA-HT-A61B-01A-11D-A29Q-08	54	52	2	44	3.703704e-02	1	exome+100bp flanks	34834024	6	44	1.722454e-07	1.263133e-06
TCGA-HT-A61C-01A-11D-A29Q-08	47	47	0	40	0	1	exome+100bp flanks	34834024	7	39	2.009530e-07	1.119595e-06
TCGA-HT-A74H-01A-11D-A32B-08	66	63	3	48	4.545455e-02	1	exome+100bp flanks	34834024	15	48	4.306135e-07	1.377963e-06
TCGA-HT-A74J-01A-12D-A32B-08	34	32	2	29	5.882353e-02	1	exome+100bp flanks	34834024	3	26	8.612269e-08	7.463967e-07
TCGA-HT-A74K-01A-11D-A32B-08	47	44	3	34	6.382979e-02	1	exome+100bp flanks	34834024	8	34	2.296605e-07	9.760572e-07
TCGA-HT-A74L-01A-11D-A32B-08	24	21	3	15	1.250000e-01	1	exome+100bp flanks	34834024	6	14	1.722454e-07	4.019059e-07
TCGA-HT-A74O-01A-11D-A32B-08	30	29	1	21	3.333333e-02	1	exome+100bp flanks	34834024	6	21	1.722454e-07	6.028589e-07
TCGA-HW-7486-01A-11D-2024-08	18	15	3	8	1.666667e-01	1	exome+100bp flanks	34834024	6	7	1.722454e-07	2.009530e-07
TCGA-HW-7487-01A-11D-2024-08	29	24	5	17	1.724138e-01	1	exome+100bp flanks	34834024	7	15	2.009530e-07	4.306135e-07
TCGA-HW-7489-01A-11D-2024-08	28	27	1	21	3.571429e-02	1	exome+100bp flanks	34834024	6	20	1.722454e-07	5.741513e-07
TCGA-HW-7490-01A-11D-2024-08	68	61	7	45	1.029412e-01	1	exome+100bp flanks	34834024	16	38	4.593210e-07	1.090887e-06
TCGA-HW-7491-01A-11D-2024-08	28	23	5	19	1.785714e-01	1	exome+100bp flanks	34834024	4	19	1.148303e-07	5.454437e-07
TCGA-HW-7493-01A-11D-2024-08	17	16	1	15	5.882353e-02	1	exome+100bp flanks	34834024	1	15	2.870756e-08	4.306135e-07
TCGA-HW-7495-01A-11D-2024-08	28	26	2	21	7.142857e-02	1	exome+100bp flanks	34834024	5	21	1.435378e-07	6.028589e-07
TCGA-HW-8319-01A-11D-2395-08	45	38	7	28	1.555556e-01	1	exome+100bp flanks	34834024	10	27	2.870756e-07	7.751042e-07
TCGA-HW-8320-01A-11D-2395-08	47	44	3	30	6.382979e-02	1	exome+100bp flanks	34834024	13	29	3.731983e-07	8.325194e-07
TCGA-HW-8321-01A-11D-2395-08	43	39	4	30	9.302326e-02	1	exome+100bp flanks	34834024	8	28	2.296605e-07	8.038118e-07
TCGA-HW-8322-01A-11D-2395-08	35	34	1	27	2.857143e-02	1	exome+100bp flanks	34834024	7	25	2.009530e-07	7.176891e-07
TCGA-HW-A5KJ-01A-12D-A27K-08	65	58	7	51	1.076923e-01	1	exome+100bp flanks	34834024	6	43	1.722454e-07	1.234425e-06
TCGA-HW-A5KK-01A-11D-A27K-08	53	47	6	38	1.132075e-01	1	exome+100bp flanks	34834024	9	35	2.583681e-07	1.004765e-06
TCGA-HW-A5KL-01A-11D-A27K-08	33	31	2	28	6.060606e-02	1	exome+100bp flanks	34834024	3	27	8.612269e-08	7.751042e-07
TCGA-HW-A5KM-01A-11D-A27K-08	31	30	1	25	3.225806e-02	1	exome+100bp flanks	34834024	5	23	1.435378e-07	6.602740e-07
TCGA-IK-7675-01A-11D-2086-08	57	54	3	44	5.263158e-02	1	exome+100bp flanks	34834024	9	40	2.583681e-07	1.148303e-06
TCGA-IK-8125-01A-11D-2253-08	70	68	2	56	2.857143e-02	0	coding only	34834024	11	51	3.157832e-07	1.464086e-06
TCGA-KT-A74X-01A-11D-A32B-08	28	26	2	19	7.142857e-02	1	exome+100bp flanks	34834024	7	18	2.009530e-07	5.167362e-07
TCGA-KT-A7W1-01A-11D-A34A-08	57	55	2	38	3.508772e-02	1	exome+100bp flanks	34834024	16	36	4.593210e-07	1.033472e-06
TCGA-P5-A5ET-01A-11D-A27K-08	41	38	3	32	7.317073e-02	1	exome+100bp flanks	34834024	6	29	1.722454e-07	8.325194e-07
TCGA-P5-A5EU-01A-11D-A27K-08	42	33	9	25	2.142857e-01	1	exome+100bp flanks	34834024	7	24	2.009530e-07	6.889816e-07
TCGA-P5-A5EV-01A-11D-A27K-08	131	124	7	103	5.343511e-02	1	exome+100bp flanks	34834024	20	94	5.741513e-07	2.698511e-06
TCGA-P5-A5EW-01A-11D-A27K-08	31	28	3	23	9.677419e-02	1	exome+100bp flanks	34834024	4	22	1.148303e-07	6.315664e-07
TCGA-P5-A5EX-01A-12D-A289-08	35	34	1	27	2.857143e-02	1	exome+100bp flanks	34834024	5	25	1.435378e-07	7.176891e-07
TCGA-P5-A5EY-01A-11D-A27K-08	8	6	2	2	2.500000e-01	1	exome+100bp flanks	34834024	4	2	1.148303e-07	5.741513e-08
TCGA-P5-A5EZ-01A-11D-A27K-08	66	63	3	48	4.545455e-02	1	exome+100bp flanks	34834024	14	47	4.019059e-07	1.349256e-06
TCGA-P5-A5F0-01A-11D-A289-08	45	41	4	33	8.888889e-02	1	exome+100bp flanks	34834024	7	32	2.009530e-07	9.186421e-07
TCGA-P5-A5F1-01A-11D-A289-08	41	32	9	24	2.195122e-01	1	exome+100bp flanks	34834024	7	24	2.009530e-07	6.889816e-07
TCGA-P5-A5F2-01A-11D-A289-08	55	48	7	37	1.272727e-01	1	exome+100bp flanks	34834024	10	36	2.870756e-07	1.033472e-06
TCGA-P5-A5F4-01A-11D-A289-08	58	56	2	38	3.448276e-02	1	exome+100bp flanks	34834024	17	36	4.880286e-07	1.033472e-06
TCGA-P5-A5F6-01A-11D-A289-08	15	11	4	5	2.666667e-01	1	exome+100bp flanks	34834024	5	5	1.435378e-07	1.435378e-07
TCGA-P5-A72U-01A-31D-A32B-08	68	64	4	46	5.882353e-02	1	exome+100bp flanks	34834024	18	46	5.167362e-07	1.320548e-06
TCGA-P5-A72W-01A-11D-A32B-08	50	46	4	40	8.000000e-02	1	exome+100bp flanks	34834024	6	38	1.722454e-07	1.090887e-06
TCGA-P5-A72X-01A-11D-A32B-08	24	20	4	20	1.666667e-01	1	exome+100bp flanks	34834024	0	20	0	5.741513e-07
TCGA-P5-A72Z-01A-11D-A32B-08	43	42	1	31	2.325581e-02	1	exome+100bp flanks	34834024	11	29	3.157832e-07	8.325194e-07
TCGA-P5-A730-01A-11D-A32B-08	28	25	3	22	1.071429e-01	1	exome+100bp flanks	34834024	3	21	8.612269e-08	6.028589e-07
TCGA-P5-A731-01A-11D-A32B-08	35	33	2	28	5.714286e-02	1	exome+100bp flanks	34834024	5	25	1.435378e-07	7.176891e-07
TCGA-P5-A733-01A-11D-A32B-08	51	48	3	39	5.882353e-02	1	exome+100bp flanks	34834024	9	36	2.583681e-07	1.033472e-06
TCGA-P5-A735-01A-11D-A32B-08	34	33	1	29	2.941176e-02	1	exome+100bp flanks	34834024	4	28	1.148303e-07	8.038118e-07
TCGA-P5-A736-01A-11D-A32B-08	43	43	0	34	0	1	exome+100bp flanks	34834024	8	32	2.296605e-07	9.186421e-07
TCGA-P5-A737-01A-11D-A32B-08	32	30	2	24	6.250000e-02	1	exome+100bp flanks	34834024	6	23	1.722454e-07	6.602740e-07
TCGA-P5-A77W-01A-11D-A32B-08	46	43	3	36	6.521739e-02	1	exome+100bp flanks	34834024	7	36	2.009530e-07	1.033472e-06
TCGA-P5-A77X-01A-11D-A32B-08	59	52	7	43	1.186441e-01	1	exome+100bp flanks	34834024	9	40	2.583681e-07	1.148303e-06
TCGA-P5-A780-01A-12D-A32B-08	74	68	6	51	8.108108e-02	1	exome+100bp flanks	34834024	17	49	4.880286e-07	1.406671e-06
TCGA-P5-A781-01A-11D-A32B-08	25	21	4	14	1.600000e-01	1	exome+100bp flanks	34834024	7	12	2.009530e-07	3.444908e-07
TCGA-QH-A65R-01A-21D-A31L-08	44	42	2	35	4.545455e-02	1	exome+100bp flanks	34834024	7	32	2.009530e-07	9.186421e-07
TCGA-QH-A65S-01A-11D-A29Q-08	31	28	3	23	9.677419e-02	1	exome+100bp flanks	34834024	4	22	1.148303e-07	6.315664e-07
TCGA-QH-A65V-01A-11D-A29Q-08	36	32	4	27	1.111111e-01	1	exome+100bp flanks	34834024	5	25	1.435378e-07	7.176891e-07
TCGA-QH-A65X-01A-11D-A32B-08	34	31	3	26	8.823529e-02	1	exome+100bp flanks	34834024	5	25	1.435378e-07	7.176891e-07
TCGA-QH-A65Z-01A-11D-A29Q-08	41	37	4	29	9.756098e-02	1	exome+100bp flanks	34834024	8	26	2.296605e-07	7.463967e-07
TCGA-QH-A6CS-01A-11D-A31L-08	32	29	3	21	9.375000e-02	1	exome+100bp flanks	34834024	7	19	2.009530e-07	5.454437e-07
TCGA-QH-A6CU-01A-11D-A31L-08	26	21	5	17	1.923077e-01	1	exome+100bp flanks	34834024	4	17	1.148303e-07	4.880286e-07
TCGA-QH-A6CV-01A-11D-A31L-08	83	78	5	52	6.024096e-02	1	exome+100bp flanks	34834024	25	50	7.176891e-07	1.435378e-06
TCGA-QH-A6CW-01A-11D-A32B-08	56	53	3	46	5.357143e-02	1	exome+100bp flanks	34834024	6	44	1.722454e-07	1.263133e-06
TCGA-QH-A6CX-01A-11D-A32B-08	50	47	3	34	6.000000e-02	1	exome+100bp flanks	34834024	13	30	3.731983e-07	8.612269e-07
TCGA-QH-A6CY-01A-11D-A32B-08	35	31	4	21	1.142857e-01	1	exome+100bp flanks	34834024	10	20	2.870756e-07	5.741513e-07
TCGA-QH-A6CZ-01A-11D-A32B-08	52	51	1	39	1.923077e-02	0	coding only	34834024	10	38	2.870756e-07	1.090887e-06
TCGA-QH-A6X3-01A-21D-A32B-08	39	35	4	32	1.025641e-01	1	exome+100bp flanks	34834024	2	29	5.741513e-08	8.325194e-07
TCGA-QH-A6X4-01A-51D-A32B-08	33	30	3	25	9.090909e-02	1	exome+100bp flanks	34834024	5	22	1.435378e-07	6.315664e-07
TCGA-QH-A6X5-01A-12D-A32B-08	41	37	4	29	9.756098e-02	1	exome+100bp flanks	34834024	7	26	2.009530e-07	7.463967e-07
TCGA-QH-A6X8-01A-12D-A32B-08	52	50	2	37	3.846154e-02	1	exome+100bp flanks	34834024	12	36	3.444908e-07	1.033472e-06
TCGA-QH-A6X9-01A-12D-A32B-08	67	58	9	45	1.343284e-01	1	exome+100bp flanks	34834024	12	44	3.444908e-07	1.263133e-06
TCGA-QH-A6XA-01A-12D-A32B-08	19	17	2	11	1.052632e-01	1	exome+100bp flanks	34834024	5	11	1.435378e-07	3.157832e-07
TCGA-QH-A6XC-01A-12D-A32B-08	65	58	7	43	1.076923e-01	1	exome+100bp flanks	34834024	12	41	3.444908e-07	1.177010e-06
TCGA-QH-A86X-01A-11D-A36O-08	26	24	2	17	7.692308e-02	1	exome+100bp flanks	34834024	7	16	2.009530e-07	4.593210e-07
TCGA-QH-A870-01A-11D-A36O-08	33	30	3	23	9.090909e-02	1	exome+100bp flanks	34834024	7	20	2.009530e-07	5.741513e-07
TCGA-R8-A6MK-01A-11D-A32B-08	37	34	3	23	8.108108e-02	1	exome+100bp flanks	34834024	10	21	2.870756e-07	6.028589e-07
TCGA-R8-A6ML-01A-11D-A32B-08	41	36	5	29	1.219512e-01	1	exome+100bp flanks	34834024	7	25	2.009530e-07	7.176891e-07
TCGA-R8-A6MO-01A-11D-A33T-08	65	57	8	44	1.230769e-01	1	exome+100bp flanks	34834024	13	41	3.731983e-07	1.177010e-06
TCGA-R8-A6YH-01A-21D-A32B-08	19	17	2	10	1.052632e-01	1	exome+100bp flanks	34834024	7	10	2.009530e-07	2.870756e-07
TCGA-R8-A73M-01A-11D-A32B-08	41	39	2	29	4.878049e-02	1	exome+100bp flanks	34834024	9	28	2.583681e-07	8.038118e-07
TCGA-RY-A83X-01A-11D-A36O-08	32	30	2	20	6.250000e-02	1	exome+100bp flanks	34834024	10	18	2.870756e-07	5.167362e-07
TCGA-RY-A83Y-01A-11D-A36O-08	44	43	1	34	2.272727e-02	1	exome+100bp flanks	34834024	9	34	2.583681e-07	9.760572e-07
TCGA-RY-A83Z-01A-11D-A36O-08	76	69	7	53	9.210526e-02	1	exome+100bp flanks	34834024	16	50	4.593210e-07	1.435378e-06
TCGA-RY-A840-01A-11D-A36O-08	29	21	8	14	2.758621e-01	1	exome+100bp flanks	34834024	7	13	2.009530e-07	3.731983e-07
TCGA-RY-A843-01A-11D-A36O-08	32	31	1	25	3.125000e-02	1	exome+100bp flanks	34834024	4	23	1.148303e-07	6.602740e-07
TCGA-RY-A845-01A-11D-A36O-08	42	39	3	29	7.142857e-02	1	exome+100bp flanks	34834024	10	29	2.870756e-07	8.325194e-07
TCGA-RY-A847-01A-11D-A36O-08	25	22	3	18	1.200000e-01	1	exome+100bp flanks	34834024	4	17	1.148303e-07	4.880286e-07
TCGA-S9-A6TS-01A-12D-A33T-08	113	108	5	86	4.424779e-02	1	exome+100bp flanks	34834024	22	81	6.315664e-07	2.325313e-06
TCGA-S9-A6TU-01A-12D-A32B-08	29	26	3	19	1.034483e-01	1	exome+100bp flanks	34834024	7	19	2.009530e-07	5.454437e-07
TCGA-S9-A6TV-01A-12D-A34J-08	46	43	3	35	6.521739e-02	1	exome+100bp flanks	34834024	7	33	2.009530e-07	9.473496e-07
TCGA-S9-A6TW-01A-12D-A32B-08	46	43	3	35	6.521739e-02	1	exome+100bp flanks	34834024	8	32	2.296605e-07	9.186421e-07
TCGA-S9-A6TX-01A-21D-A32B-08	49	45	4	38	8.163265e-02	1	exome+100bp flanks	34834024	7	36	2.009530e-07	1.033472e-06
TCGA-S9-A6TY-01A-12D-A32B-08	43	41	2	29	4.651163e-02	1	exome+100bp flanks	34834024	12	27	3.444908e-07	7.751042e-07
TCGA-S9-A6TZ-01A-21D-A32B-08	50	45	5	31	1.000000e-01	1	exome+100bp flanks	34834024	13	29	3.731983e-07	8.325194e-07
TCGA-S9-A6U0-01A-12D-A32B-08	56	51	5	38	8.928571e-02	1	exome+100bp flanks	34834024	13	35	3.731983e-07	1.004765e-06
TCGA-S9-A6U1-01A-21D-A33T-08	37	32	5	22	1.351351e-01	1	exome+100bp flanks	34834024	10	22	2.870756e-07	6.315664e-07
TCGA-S9-A6U2-01A-21D-A33T-08	55	52	3	38	5.454545e-02	1	exome+100bp flanks	34834024	13	35	3.731983e-07	1.004765e-06
TCGA-S9-A6U5-01A-12D-A33T-08	43	40	3	32	6.976744e-02	1	exome+100bp flanks	34834024	8	30	2.296605e-07	8.612269e-07
TCGA-S9-A6U6-01A-12D-A33T-08	61	59	2	50	3.278689e-02	1	exome+100bp flanks	34834024	9	46	2.583681e-07	1.320548e-06
TCGA-S9-A6U8-01A-21D-A33T-08	34	32	2	25	5.882353e-02	1	exome+100bp flanks	34834024	4	23	1.148303e-07	6.602740e-07
TCGA-S9-A6U9-01A-11D-A32B-08	37	35	2	24	5.405405e-02	1	exome+100bp flanks	34834024	11	23	3.157832e-07	6.602740e-07
TCGA-S9-A6UA-01A-12D-A33T-08	70	66	4	49	5.714286e-02	1	exome+100bp flanks	34834024	17	46	4.880286e-07	1.320548e-06
TCGA-S9-A6UB-01A-21D-A33T-08	51	46	5	32	9.803922e-02	1	exome+100bp flanks	34834024	14	32	4.019059e-07	9.186421e-07
TCGA-S9-A6WD-01A-12D-A33T-08	63	56	7	34	1.111111e-01	1	exome+100bp flanks	34834024	20	32	5.741513e-07	9.186421e-07
TCGA-S9-A6WE-01A-12D-A33T-08	22	19	3	13	1.363636e-01	1	exome+100bp flanks	34834024	6	12	1.722454e-07	3.444908e-07
TCGA-S9-A6WG-01A-11D-A33T-08	35	34	1	28	2.857143e-02	1	exome+100bp flanks	34834024	5	28	1.435378e-07	8.038118e-07
TCGA-S9-A6WH-01A-12D-A33T-08	137	127	10	94	7.299270e-02	1	exome+100bp flanks	34834024	31	87	8.899345e-07	2.497558e-06
TCGA-S9-A6WI-01A-21D-A33T-08	50	49	1	39	2.000000e-02	0	coding only	34834024	10	37	2.870756e-07	1.062180e-06
TCGA-S9-A6WL-01A-21D-A33T-08	107	100	7	84	6.542056e-02	1	exome+100bp flanks	34834024	13	79	3.731983e-07	2.267898e-06
TCGA-S9-A6WM-01A-12D-A33T-08	95	91	4	74	4.210526e-02	1	exome+100bp flanks	34834024	16	67	4.593210e-07	1.923407e-06
TCGA-S9-A6WN-01A-12D-A33T-08	60	55	5	43	8.333333e-02	1	exome+100bp flanks	34834024	10	40	2.870756e-07	1.148303e-06
TCGA-S9-A6WO-01A-21D-A34A-08	49	47	2	41	4.081633e-02	1	exome+100bp flanks	34834024	6	40	1.722454e-07	1.148303e-06
TCGA-S9-A6WP-01A-12D-A34A-08	53	49	4	40	7.547170e-02	1	exome+100bp flanks	34834024	8	40	2.296605e-07	1.148303e-06
TCGA-S9-A6WQ-01A-12D-A34A-08	61	57	4	43	6.557377e-02	1	exome+100bp flanks	34834024	13	43	3.731983e-07	1.234425e-06
TCGA-S9-A7IQ-01A-21D-A34A-08	31	28	3	22	9.677419e-02	1	exome+100bp flanks	34834024	6	20	1.722454e-07	5.741513e-07
TCGA-S9-A7IS-01A-11D-A34A-08	69	64	5	51	7.246377e-02	1	exome+100bp flanks	34834024	12	50	3.444908e-07	1.435378e-06
TCGA-S9-A7IX-01A-12D-A34A-08	45	43	2	32	4.444444e-02	1	exome+100bp flanks	34834024	10	30	2.870756e-07	8.612269e-07
TCGA-S9-A7IY-01A-11D-A34A-08	37	35	2	29	5.405405e-02	1	exome+100bp flanks	34834024	6	28	1.722454e-07	8.038118e-07
TCGA-S9-A7IZ-01A-11D-A34A-08	55	44	11	31	2.000000e-01	1	exome+100bp flanks	34834024	13	30	3.731983e-07	8.612269e-07
TCGA-S9-A7J0-01A-11D-A34A-08	57	57	0	41	0	0	coding only	34834024	14	40	4.019059e-07	1.148303e-06
TCGA-S9-A7J1-01A-21D-A34J-08	38	34	4	29	1.052632e-01	1	exome+100bp flanks	34834024	5	27	1.435378e-07	7.751042e-07
TCGA-S9-A7J2-01A-11D-A34A-08	19	17	2	14	1.052632e-01	1	exome+100bp flanks	34834024	3	14	8.612269e-08	4.019059e-07
TCGA-S9-A7J3-01A-21D-A34J-08	41	41	0	34	0	1	exome+100bp flanks	34834024	6	33	1.722454e-07	9.473496e-07
TCGA-S9-A7QW-01A-11D-A34A-08	55	52	3	34	5.454545e-02	1	exome+100bp flanks	34834024	17	32	4.880286e-07	9.186421e-07
TCGA-S9-A7QX-01A-11D-A34A-08	40	36	4	30	1.000000e-01	1	exome+100bp flanks	34834024	6	30	1.722454e-07	8.612269e-07
TCGA-S9-A7QY-01A-11D-A34A-08	71	65	6	45	8.450704e-02	1	exome+100bp flanks	34834024	19	44	5.454437e-07	1.263133e-06
TCGA-S9-A7QZ-01A-12D-A34J-08	99	93	6	78	6.060606e-02	1	exome+100bp flanks	34834024	15	75	4.306135e-07	2.153067e-06
TCGA-S9-A7R1-01A-12D-A34J-08	31	30	1	27	3.225806e-02	1	exome+100bp flanks	34834024	3	26	8.612269e-08	7.463967e-07
TCGA-S9-A7R2-01A-21D-A34J-08	59	48	11	35	1.864407e-01	1	exome+100bp flanks	34834024	11	35	3.157832e-07	1.004765e-06
TCGA-S9-A7R3-01A-11D-A34J-08	45	38	7	31	1.555556e-01	1	exome+100bp flanks	34834024	5	31	1.435378e-07	8.899345e-07
TCGA-S9-A7R4-01A-12D-A34J-08	41	35	6	27	1.463415e-01	1	exome+100bp flanks	34834024	6	26	1.722454e-07	7.463967e-07
TCGA-S9-A7R7-01A-11D-A34J-08	32	31	1	24	3.125000e-02	1	exome+100bp flanks	34834024	6	23	1.722454e-07	6.602740e-07
TCGA-S9-A7R8-01A-11D-A34J-08	60	52	8	41	1.333333e-01	1	exome+100bp flanks	34834024	10	41	2.870756e-07	1.177010e-06
TCGA-S9-A89V-01A-11D-A36O-08	63	57	6	45	9.523810e-02	1	exome+100bp flanks	34834024	9	39	2.583681e-07	1.119595e-06
TCGA-S9-A89Z-01A-11D-A36O-08	78	76	2	63	2.564103e-02	0	coding only	34834024	12	60	3.444908e-07	1.722454e-06
TCGA-TM-A7C3-01A-11D-A32B-08	77	73	4	55	5.194805e-02	1	exome+100bp flanks	34834024	17	52	4.880286e-07	1.492793e-06
TCGA-TM-A7C4-01A-11D-A32B-08	51	46	5	37	9.803922e-02	1	exome+100bp flanks	34834024	8	36	2.296605e-07	1.033472e-06
TCGA-TM-A7C5-01A-11D-A32B-08	35	33	2	29	5.714286e-02	1	exome+100bp flanks	34834024	4	29	1.148303e-07	8.325194e-07
TCGA-TM-A7CA-01A-21D-A33T-08	58	56	2	43	3.448276e-02	1	exome+100bp flanks	34834024	13	41	3.731983e-07	1.177010e-06
TCGA-TM-A7CF-01A-11D-A32B-08	57	51	6	45	1.052632e-01	1	exome+100bp flanks	34834024	6	40	1.722454e-07	1.148303e-06
TCGA-TM-A84B-01A-11D-A36O-08	48	46	2	30	4.166667e-02	1	exome+100bp flanks	34834024	15	30	4.306135e-07	8.612269e-07
TCGA-TM-A84C-01A-11D-A36O-08	27	26	1	24	3.703704e-02	1	exome+100bp flanks	34834024	2	23	5.741513e-08	6.602740e-07
TCGA-TM-A84F-01A-11D-A36O-08	26	26	0	22	0	1	exome+100bp flanks	34834024	4	22	1.148303e-07	6.315664e-07
TCGA-TM-A84G-01A-11D-A36O-08	42	38	4	32	9.523810e-02	1	exome+100bp flanks	34834024	5	32	1.435378e-07	9.186421e-07
TCGA-TM-A84H-01A-11D-A36O-08	58	54	4	46	6.896552e-02	1	exome+100bp flanks	34834024	8	43	2.296605e-07	1.234425e-06
TCGA-TM-A84I-01A-11D-A36O-08	54	48	6	42	1.111111e-01	1	exome+100bp flanks	34834024	6	40	1.722454e-07	1.148303e-06
TCGA-TM-A84J-01A-11D-A36O-08	65	58	7	42	1.076923e-01	1	exome+100bp flanks	34834024	14	42	4.019059e-07	1.205718e-06
TCGA-TM-A84L-01A-11D-A36O-08	36	30	6	26	1.666667e-01	1	exome+100bp flanks	34834024	4	24	1.148303e-07	6.889816e-07
TCGA-TM-A84M-01A-11D-A36O-08	40	35	5	28	1.250000e-01	1	exome+100bp flanks	34834024	6	26	1.722454e-07	7.463967e-07
TCGA-TM-A84O-01A-11D-A36O-08	36	34	2	26	5.555556e-02	1	exome+100bp flanks	34834024	7	26	2.009530e-07	7.463967e-07
TCGA-TM-A84Q-01A-11D-A36O-08	41	39	2	32	4.878049e-02	1	exome+100bp flanks	34834024	7	31	2.009530e-07	8.899345e-07
TCGA-TM-A84R-01A-21D-A36O-08	26	22	4	16	1.538462e-01	1	exome+100bp flanks	34834024	6	16	1.722454e-07	4.593210e-07
TCGA-TM-A84S-01A-11D-A36O-08	24	23	1	15	4.166667e-02	1	exome+100bp flanks	34834024	6	14	1.722454e-07	4.019059e-07
TCGA-TM-A84T-01A-11D-A36O-08	27	25	2	22	7.407407e-02	1	exome+100bp flanks	34834024	3	21	8.612269e-08	6.028589e-07
TCGA-TQ-A7RF-01A-11D-A33T-08	52	48	4	37	7.692308e-02	1	exome+100bp flanks	34834024	10	37	2.870756e-07	1.062180e-06
TCGA-TQ-A7RG-01A-11D-A33T-08	62	55	7	40	1.129032e-01	1	exome+100bp flanks	34834024	14	37	4.019059e-07	1.062180e-06
TCGA-TQ-A7RH-01A-12D-A34A-08	73	66	7	52	9.589041e-02	1	exome+100bp flanks	34834024	14	49	4.019059e-07	1.406671e-06
TCGA-TQ-A7RI-01A-11D-A33T-08	48	38	10	33	2.083333e-01	1	exome+100bp flanks	34834024	5	32	1.435378e-07	9.186421e-07
TCGA-TQ-A7RJ-01A-11D-A33T-08	90	83	7	61	7.777778e-02	1	exome+100bp flanks	34834024	20	61	5.741513e-07	1.751161e-06
TCGA-TQ-A7RK-01A-11D-A33T-08	48	44	4	36	8.333333e-02	1	exome+100bp flanks	34834024	6	35	1.722454e-07	1.004765e-06
TCGA-TQ-A7RM-01A-11D-A33T-08	112	100	12	79	1.071429e-01	1	exome+100bp flanks	34834024	20	73	5.741513e-07	2.095652e-06
TCGA-TQ-A7RN-01A-11D-A33T-08	55	50	5	40	9.090909e-02	1	exome+100bp flanks	34834024	9	35	2.583681e-07	1.004765e-06
TCGA-TQ-A7RO-01A-11D-A33T-08	44	37	7	27	1.590909e-01	1	exome+100bp flanks	34834024	10	25	2.870756e-07	7.176891e-07
TCGA-TQ-A7RP-01A-21D-A34A-08	67	61	6	45	8.955224e-02	1	exome+100bp flanks	34834024	14	41	4.019059e-07	1.177010e-06
TCGA-TQ-A7RQ-01A-11D-A33T-08	64	57	7	43	1.093750e-01	1	exome+100bp flanks	34834024	14	42	4.019059e-07	1.205718e-06
TCGA-TQ-A7RR-01A-21D-A34A-08	49	42	7	32	1.428571e-01	1	exome+100bp flanks	34834024	7	31	2.009530e-07	8.899345e-07
TCGA-TQ-A7RS-01A-12D-A33T-08	39	38	1	29	2.564103e-02	1	exome+100bp flanks	34834024	9	27	2.583681e-07	7.751042e-07
TCGA-TQ-A7RU-01A-21D-A34A-08	50	45	5	34	1.000000e-01	1	exome+100bp flanks	34834024	11	33	3.157832e-07	9.473496e-07
TCGA-TQ-A7RV-01A-21D-A34A-08	45	38	7	32	1.555556e-01	1	exome+100bp flanks	34834024	6	30	1.722454e-07	8.612269e-07
TCGA-TQ-A7RW-01A-11D-A33T-08	92	88	4	61	4.347826e-02	1	exome+100bp flanks	34834024	26	58	7.463967e-07	1.665039e-06
TCGA-TQ-A8XE-01A-11D-A36O-08	53	45	8	38	1.509434e-01	1	exome+100bp flanks	34834024	6	37	1.722454e-07	1.062180e-06
TCGA-VM-A8C8-01A-11D-A36O-08	55	54	1	38	1.818182e-02	0	coding only	34834024	16	36	4.593210e-07	1.033472e-06
TCGA-VM-A8C9-01A-11D-A36O-08	15	11	4	7	2.666667e-01	1	exome+100bp flanks	34834024	4	7	1.148303e-07	2.009530e-07
TCGA-VM-A8CA-01A-11D-A36O-08	41	38	3	31	7.317073e-02	1	exome+100bp flanks	34834024	6	27	1.722454e-07	7.751042e-07
TCGA-VM-A8CB-01A-11D-A36O-08	39	37	2	31	5.128205e-02	1	exome+100bp flanks	34834024	6	30	1.722454e-07	8.612269e-07
TCGA-VM-A8CD-01A-11D-A36O-08	42	34	8	27	1.904762e-01	1	exome+100bp flanks	34834024	7	26	2.009530e-07	7.463967e-07
TCGA-VM-A8CE-01A-11D-A36O-08	26	21	5	18	1.923077e-01	1	exome+100bp flanks	34834024	3	16	8.612269e-08	4.593210e-07
TCGA-VM-A8CF-01A-11D-A36O-08	55	49	6	34	1.090909e-01	1	exome+100bp flanks	34834024	15	34	4.306135e-07	9.760572e-07
TCGA-VM-A8CH-01A-12D-A36O-08	20	16	4	9	2.000000e-01	1	exome+100bp flanks	34834024	5	9	1.435378e-07	2.583681e-07
TCGA-VV-A829-01A-21D-A36O-08	47	40	7	32	1.489362e-01	1	exome+100bp flanks	34834024	7	27	2.009530e-07	7.751042e-07
TCGA-VV-A86M-01A-11D-A36O-08	21	20	1	16	4.761905e-02	1	exome+100bp flanks	34834024	4	16	1.148303e-07	4.593210e-07
TCGA-VW-A7QS-01A-12D-A33T-08	70	61	9	44	1.285714e-01	1	exome+100bp flanks	34834024	17	42	4.880286e-07	1.205718e-06
TCGA-VW-A8FI-01A-11D-A36O-08	81	72	9	53	1.111111e-01	1	exome+100bp flanks	34834024	17	51	4.880286e-07	1.464086e-06
TCGA-W9-A837-01A-11D-A36O-08	45	43	2	34	4.444444e-02	1	exome+100bp flanks	34834024	9	31	2.583681e-07	8.899345e-07
TCGA-WH-A86K-01A-11D-A36O-08	53	48	5	34	9.433962e-02	1	exome+100bp flanks	34834024	13	30	3.731983e-07	8.612269e-07
TCGA-WY-A858-01A-11D-A36O-08	50	49	1	38	2.000000e-02	0	coding only	34834024	11	35	3.157832e-07	1.004765e-06
TCGA-WY-A859-01A-12D-A36O-08	40	38	2	33	5.000000e-02	1	exome+100bp flanks	34834024	4	33	1.148303e-07	9.473496e-07
TCGA-WY-A85A-01A-21D-A36O-08	27	23	4	18	1.481481e-01	1	exome+100bp flanks	34834024	5	18	1.435378e-07	5.167362e-07
TCGA-WY-A85B-01A-11D-A36O-08	24	20	4	17	1.666667e-01	1	exome+100bp flanks	34834024	3	17	8.612269e-08	4.880286e-07
TCGA-WY-A85C-01A-11D-A36O-08	40	37	3	31	7.500000e-02	1	exome+100bp flanks	34834024	5	27	1.435378e-07	7.751042e-07
TCGA-WY-A85D-01A-11D-A36O-08	52	46	6	33	1.153846e-01	1	exome+100bp flanks	34834024	13	29	3.731983e-07	8.325194e-07
TCGA-WY-A85E-01A-11D-A36O-08	95	91	4	69	4.210526e-02	1	exome+100bp flanks	34834024	19	63	5.454437e-07	1.808577e-06