Clinical Features	MRNA_CNMF		MRNA_CHIERARCHICAL		CN_CNMF		METHLYATION_CNMF		RPPA_CNMF		RPPA_CHIERARCHICAL		MRNASEQ_CNMF		MRNASEQ_CHIERARCHICAL		MIRSEQ_CNMF		MIRSEQ_CHIERARCHICAL		MIRSEQ_MATURE_CNMF		MIRSEQ_MATURE_CHIERARCHICAL	
	nCNV (%)	nWild-Type	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
amp_1q32.1	82 (9%)	800	0.60019	0.62	0.69648	0.711	9.9999e-06	1.7e-05	9.9999e-06	1.7e-05	0.00060999	0.000871	0.01021	0.0129	4e-05	6.37e-05	9.9999e-06	1.7e-05	0.00014	0.000212	9.9999e-06	1.7e-05	0.01302	0.0163	9.9999e-06	1.7e-05
amp_2q32.1	136 (15%)	746	0.54048	0.569	0.3682	0.398	9.9999e-06	1.7e-05	0.00017	0.000257	0.52421	0.553	0.00251	0.00339	0.01917	0.0234	9.9999e-06	1.7e-05	0.29733	0.326	0.00042	0.000613	0.077079	0.0881	0.01411	0.0176
amp_3q26.32	193 (22%)	689	0.04919	0.0574	0.11061	0.125	9.9999e-06	1.7e-05	9.9999e-06	1.7e-05	0.03804	0.0451	0.00089999	0.00126	9.9999e-06	1.7e-05	9.9999e-06	1.7e-05	9.9999e-06	1.7e-05	9.9999e-06	1.7e-05	9.9999e-06	1.7e-05	9.9999e-06	1.7e-05
amp_5q35.1	376 (43%)	506	0.00062999	0.000893	0.002	0.00274	9.9999e-06	1.7e-05	9.9999e-06	1.7e-05	0.15032	0.169	9.9999e-06	1.7e-05	9.9999e-06	1.7e-05	9.9999e-06	1.7e-05	9.9999e-06	1.7e-05	9.9999e-06	1.7e-05	9.9999e-06	1.7e-05	9.9999e-06	1.7e-05
amp_7q31.2	377 (43%)	505	0.052109	0.0606	0.04468	0.0528	9.9999e-06	1.7e-05	9.9999e-06	1.7e-05	0.03017	0.0362	0.00336	0.0045	9.9999e-06	1.7e-05	9.9999e-06	1.7e-05	9.9999e-06	1.7e-05	9.9999e-06	1.7e-05	9.9999e-06	1.7e-05	9.9999e-06	1.7e-05
amp_8q24.22	125 (14%)	757	0.42331	0.452	0.60024	0.62	9.9999e-06	1.7e-05	9.9999e-06	1.7e-05	7.9999e-05	0.000125	4e-05	6.37e-05	9.9999e-06	1.7e-05	9.9999e-06	1.7e-05	0.00493	0.00646	9.9999e-06	1.7e-05	0.00019	0.000286	9.9999e-06	1.7e-05
amp_10p14	34 (4%)	848	0.19697	0.22	0.474	0.503	0.00216	0.00295	0.02514	0.0304	0.093869	0.106	0.04601	0.0542	0.00223	0.00303	0.00139	0.00193	0.38788	0.415	0.0058799	0.00765	0.072969	0.0836	0.3733	0.403
amp_17q24.3	243 (28%)	639	9.9999e-06	1.7e-05	9.9999e-06	1.7e-05	9.9999e-06	1.7e-05	9.9999e-06	1.7e-05	0.22043	0.245	0.01589	0.0197	9.9999e-06	1.7e-05	9.9999e-06	1.7e-05	9.9999e-06	1.7e-05	9.9999e-06	1.7e-05	9.9999e-06	1.7e-05	9.9999e-06	1.7e-05
amp_xq11.2	136 (15%)	746	4e-05	6.37e-05	2e-05	3.32e-05	9.9999e-06	1.7e-05	9.9999e-06	1.7e-05	0.60869	0.625	0.00221	0.00301	9.9999e-06	1.7e-05	9.9999e-06	1.7e-05	9.9999e-06	1.7e-05	9.9999e-06	1.7e-05	9.9999e-06	1.7e-05	9.9999e-06	1.7e-05
del_1p36.31	209 (24%)	673	0.00157	0.00216	0.00352	0.00469	9.9999e-06	1.7e-05	9.9999e-06	1.7e-05	0.5579	0.584	9.9999e-06	1.7e-05	9.9999e-06	1.7e-05	9.9999e-06	1.7e-05	3e-05	4.86e-05	9.9999e-06	1.7e-05	9.9999e-06	1.7e-05	9.9999e-06	1.7e-05
del_1p31.1	166 (19%)	716	0.00396	0.00523	0.01761	0.0217	9.9999e-06	1.7e-05	9.9999e-06	1.7e-05	0.74308	0.757	9.9999e-06	1.7e-05	9.9999e-06	1.7e-05	9.9999e-06	1.7e-05	9.9999e-06	1.7e-05	9.9999e-06	1.7e-05	9.9999e-06	1.7e-05	9.9999e-06	1.7e-05
del_1q44	116 (13%)	766	0.01464	0.0183	0.0078699	0.01	9.9999e-06	1.7e-05	9.9999e-06	1.7e-05	0.95085	0.958	9.9999e-06	1.7e-05	9.9999e-06	1.7e-05	9.9999e-06	1.7e-05	9.9999e-06	1.7e-05	9.9999e-06	1.7e-05	9.9999e-06	1.7e-05	9.9999e-06	1.7e-05
del_2q22.1	75 (9%)	807	0.00082999	0.00116	0.00029	0.000427	9.9999e-06	1.7e-05	9.9999e-06	1.7e-05	0.56128	0.586	9.9999e-06	1.7e-05	9.9999e-06	1.7e-05	9.9999e-06	1.7e-05	9.9999e-06	1.7e-05	9.9999e-06	1.7e-05	9.9999e-06	1.7e-05	9.9999e-06	1.7e-05
del_2q37.3	111 (13%)	771	0.00044	0.00064	6.9999e-05	0.00011	0.00045	0.000652	9.9999e-06	1.7e-05	0.56387	0.587	0.00021	0.000314	9.9999e-06	1.7e-05	9.9999e-06	1.7e-05	3e-05	4.86e-05	9.9999e-06	1.7e-05	9.9999e-06	1.7e-05	9.9999e-06	1.7e-05
del_3p26.3	489 (55%)	393	9.9999e-06	1.7e-05	9.9999e-06	1.7e-05	9.9999e-06	1.7e-05	9.9999e-06	1.7e-05	2e-05	3.32e-05	9.9999e-06	1.7e-05	9.9999e-06	1.7e-05	9.9999e-06	1.7e-05	9.9999e-06	1.7e-05	9.9999e-06	1.7e-05	9.9999e-06	1.7e-05	9.9999e-06	1.7e-05
del_3p21.2	503 (57%)	379	9.9999e-06	1.7e-05	9.9999e-06	1.7e-05	9.9999e-06	1.7e-05	9.9999e-06	1.7e-05	9.9999e-06	1.7e-05	9.9999e-06	1.7e-05	9.9999e-06	1.7e-05	9.9999e-06	1.7e-05	9.9999e-06	1.7e-05	9.9999e-06	1.7e-05	9.9999e-06	1.7e-05	9.9999e-06	1.7e-05
del_3p14.1	408 (46%)	474	9.9999e-06	1.7e-05	9.9999e-06	1.7e-05	9.9999e-06	1.7e-05	9.9999e-06	1.7e-05	0.00041	0.000601	9.9999e-06	1.7e-05	9.9999e-06	1.7e-05	9.9999e-06	1.7e-05	9.9999e-06	1.7e-05	9.9999e-06	1.7e-05	9.9999e-06	1.7e-05	9.9999e-06	1.7e-05
del_3p12.2	336 (38%)	546	8.9999e-05	0.000139	0.00021	0.000314	9.9999e-06	1.7e-05	9.9999e-06	1.7e-05	0.04783	0.056	9.9999e-06	1.7e-05	9.9999e-06	1.7e-05	9.9999e-06	1.7e-05	9.9999e-06	1.7e-05	9.9999e-06	1.7e-05	9.9999e-06	1.7e-05	9.9999e-06	1.7e-05
del_4q34.3	113 (13%)	769	0.5495	0.577	0.31655	0.345	9.9999e-06	1.7e-05	9.9999e-06	1.7e-05	0.069669	0.0801	0.00056999	0.000817	9.9999e-06	1.7e-05	9.9999e-06	1.7e-05	0.0061699	0.008	9.9999e-06	1.7e-05	0.00061999	0.000882	5e-05	7.9e-05
del_5p15.33	31 (4%)	851	NA	NA	NA	NA	9.9999e-05	0.000154	0.00027	0.000399	0.03487	0.0416	0.04727	0.0555	3e-05	4.86e-05	9.9999e-06	1.7e-05	0.00068999	0.000974	9.9999e-06	1.7e-05	0.00426	0.0056	0.00014	0.000212
del_6q26	233 (26%)	649	0.0014	0.00194	0.0080499	0.0102	9.9999e-06	1.7e-05	9.9999e-06	1.7e-05	0.0036	0.00478	9.9999e-06	1.7e-05	9.9999e-06	1.7e-05	9.9999e-06	1.7e-05	0.62899	0.644	9.9999e-06	1.7e-05	9.9999e-06	1.7e-05	9.9999e-06	1.7e-05
del_6q26	234 (27%)	648	0.00144	0.00199	0.0077199	0.00988	9.9999e-06	1.7e-05	9.9999e-06	1.7e-05	0.00327	0.00439	9.9999e-06	1.7e-05	9.9999e-06	1.7e-05	9.9999e-06	1.7e-05	0.571	0.593	9.9999e-06	1.7e-05	9.9999e-06	1.7e-05	9.9999e-06	1.7e-05
del_8p23.2	184 (21%)	698	0.35992	0.39	0.60817	0.625	9.9999e-06	1.7e-05	9.9999e-06	1.7e-05	0.30307	0.332	0.0076799	0.00986	9.9999e-06	1.7e-05	9.9999e-06	1.7e-05	9.9999e-06	1.7e-05	9.9999e-06	1.7e-05	9.9999e-06	1.7e-05	9.9999e-06	1.7e-05
del_9p23	198 (22%)	684	0.01787	0.0219	0.02151	0.0261	9.9999e-06	1.7e-05	9.9999e-06	1.7e-05	3e-05	4.86e-05	9.9999e-06	1.7e-05	9.9999e-06	1.7e-05	9.9999e-06	1.7e-05	9.9999e-06	1.7e-05	9.9999e-06	1.7e-05	9.9999e-06	1.7e-05	5e-05	7.9e-05
del_9p21.3	209 (24%)	673	0.0054599	0.00713	0.0073799	0.00951	9.9999e-06	1.7e-05	9.9999e-06	1.7e-05	9.9999e-06	1.7e-05	9.9999e-06	1.7e-05	9.9999e-06	1.7e-05	9.9999e-06	1.7e-05	9.9999e-06	1.7e-05	9.9999e-06	1.7e-05	9.9999e-06	1.7e-05	9.9999e-06	1.7e-05
del_10q23.31	164 (19%)	718	0.2847	0.314	0.17481	0.196	9.9999e-06	1.7e-05	9.9999e-06	1.7e-05	0.48788	0.516	0.00050999	0.000733	9.9999e-06	1.7e-05	9.9999e-06	1.7e-05	0.26727	0.296	9.9999e-06	1.7e-05	9.9999e-06	1.7e-05	9.9999e-06	1.7e-05
del_11q23.1	71 (8%)	811	0.055829	0.0646	0.089679	0.102	0.00022	0.000326	9.9999e-06	1.7e-05	0.28926	0.318	0.00072999	0.00103	2e-05	3.32e-05	9.9999e-06	1.7e-05	0.0147	0.0183	2e-05	3.32e-05	9.9999e-06	1.7e-05	2e-05	3.32e-05
del_13q13.2	149 (17%)	733	0.02355	0.0285	0.01766	0.0217	3e-05	4.86e-05	9.9999e-06	1.7e-05	0.036	0.0428	9.9999e-06	1.7e-05	9.9999e-06	1.7e-05	9.9999e-06	1.7e-05	0.00308	0.00415	9.9999e-06	1.7e-05	9.9999e-06	1.7e-05	9.9999e-06	1.7e-05
del_14q31.1	279 (32%)	603	3e-05	4.86e-05	0.00022	0.000326	9.9999e-06	1.7e-05	9.9999e-06	1.7e-05	9.9999e-06	1.7e-05	9.9999e-06	1.7e-05	9.9999e-06	1.7e-05	9.9999e-06	1.7e-05	9.9999e-06	1.7e-05	9.9999e-06	1.7e-05	9.9999e-06	1.7e-05	9.9999e-06	1.7e-05
del_16q23.3	37 (4%)	845	0.87045	0.882	0.91526	0.925	0.37915	0.408	0.00378	0.00501	0.38739	0.415	0.34585	0.376	0.03282	0.0393	8.9999e-05	0.000139	0.21918	0.244	0.01199	0.0151	0.01152	0.0146	0.054099	0.0628
del_19p13.3	43 (5%)	839	1	1	0.85697	0.871	8.9999e-05	0.000139	4e-05	6.37e-05	0.18278	0.205	0.01865	0.0228	9.9999e-06	1.7e-05	9.9999e-06	1.7e-05	0.0065699	0.00849	5e-04	0.000722	8.9999e-05	0.000139	0.02817	0.0339
del_xp22.2	125 (14%)	757	0.083559	0.0952	0.068899	0.0795	0.00013	0.000199	9.9999e-06	1.7e-05	0.45306	0.482	9.9999e-06	1.7e-05	9.9999e-06	1.7e-05	9.9999e-06	1.7e-05	9.9999e-06	1.7e-05	9.9999e-06	1.7e-05	9.9999e-06	1.7e-05	9.9999e-06	1.7e-05