This pipeline computes the correlation between significant copy number variation (cnv focal) genes and molecular subtypes.
Testing the association between copy number variation 28 focal events and 10 molecular subtypes across 288 patients, 177 significant findings detected with P value < 0.05 and Q value < 0.25.
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amp_2p23.2 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', and 'MIRSEQ_CNMF'.
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amp_2q32.1 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', and 'MIRSEQ_CNMF'.
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amp_3q26.31 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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amp_5q35.3 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.
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amp_7p11.2 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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amp_7q31.2 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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amp_17q23.2 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_1p36.31 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_2p12 cnv correlated to 'METHLYATION_CNMF', 'MRNASEQ_CNMF', and 'MIRSEQ_CNMF'.
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del_2q22.1 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.
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del_2q37.3 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.
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del_3p22.1 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_4q34.3 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_5p15.33 cnv correlated to 'METHLYATION_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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del_5q35.2 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_6p12.3 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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del_6q25.3 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.
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del_9p21.3 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_10q21.1 cnv correlated to 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_11q22.3 cnv correlated to 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_11q23.3 cnv correlated to 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_14q11.2 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_14q24.2 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_15q13.3 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_16q24.2 cnv correlated to 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
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del_19p13.3 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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del_19q13.42 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.
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del_22q12.2 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
Clinical Features |
CN CNMF |
METHLYATION CNMF |
RPPA CNMF |
RPPA CHIERARCHICAL |
MRNASEQ CNMF |
MRNASEQ CHIERARCHICAL |
MIRSEQ CNMF |
MIRSEQ CHIERARCHICAL |
MIRSEQ MATURE CNMF |
MIRSEQ MATURE CHIERARCHICAL |
||
nCNV (%) | nWild-Type | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | |
amp 7p11 2 | 175 (61%) | 113 |
1e-05 (5.38e-05) |
1e-05 (5.38e-05) |
0.0113 (0.0229) |
1e-05 (5.38e-05) |
1e-05 (5.38e-05) |
1e-05 (5.38e-05) |
8e-05 (0.000329) |
0.00041 (0.00145) |
1e-05 (5.38e-05) |
3e-05 (0.000135) |
amp 7q31 2 | 177 (61%) | 111 |
1e-05 (5.38e-05) |
1e-05 (5.38e-05) |
0.0203 (0.0368) |
3e-05 (0.000135) |
1e-05 (5.38e-05) |
1e-05 (5.38e-05) |
0.00068 (0.00227) |
0.00059 (0.00201) |
1e-05 (5.38e-05) |
3e-05 (0.000135) |
amp 17q23 2 | 199 (69%) | 89 |
1e-05 (5.38e-05) |
1e-05 (5.38e-05) |
0.00346 (0.00838) |
9e-05 (0.00036) |
1e-05 (5.38e-05) |
1e-05 (5.38e-05) |
0.00882 (0.0182) |
0.00773 (0.0162) |
0.0002 (0.000757) |
0.00036 (0.00129) |
del 5q35 2 | 11 (4%) | 277 |
0.0403 (0.066) |
1e-05 (5.38e-05) |
0.0336 (0.0564) |
0.00021 (0.000784) |
0.00027 (0.000995) |
1e-05 (5.38e-05) |
0.0797 (0.119) |
0.00077 (0.00254) |
0.0032 (0.008) |
0.0183 (0.0335) |
del 9p21 3 | 40 (14%) | 248 |
0.00269 (0.00703) |
1e-05 (5.38e-05) |
0.368 (0.444) |
0.00112 (0.00348) |
1e-05 (5.38e-05) |
1e-05 (5.38e-05) |
0.0125 (0.0246) |
0.0124 (0.0246) |
0.00111 (0.00348) |
6e-05 (0.000255) |
del 14q24 2 | 50 (17%) | 238 |
2e-05 (9.82e-05) |
4e-05 (0.000178) |
0.0237 (0.0423) |
0.00271 (0.00703) |
1e-05 (5.38e-05) |
1e-05 (5.38e-05) |
0.0243 (0.0431) |
1 (1.00) |
0.0153 (0.0285) |
0.00357 (0.00854) |
amp 3q26 31 | 101 (35%) | 187 |
1e-05 (5.38e-05) |
1e-05 (5.38e-05) |
0.238 (0.303) |
0.00151 (0.00448) |
1e-05 (5.38e-05) |
0.0121 (0.0242) |
0.00255 (0.00693) |
0.00344 (0.00838) |
0.557 (0.621) |
0.00484 (0.0111) |
del 3p22 1 | 25 (9%) | 263 |
1e-05 (5.38e-05) |
1e-05 (5.38e-05) |
0.385 (0.46) |
0.0296 (0.0508) |
1e-05 (5.38e-05) |
1e-05 (5.38e-05) |
0.0143 (0.0277) |
0.0455 (0.0724) |
0.0503 (0.0791) |
0.00266 (0.00703) |
del 4q34 3 | 32 (11%) | 256 |
0.00116 (0.00357) |
1e-05 (5.38e-05) |
0.275 (0.345) |
0.0128 (0.0251) |
1e-05 (5.38e-05) |
1e-05 (5.38e-05) |
0.0552 (0.0857) |
0.468 (0.533) |
0.0269 (0.0467) |
0.00347 (0.00838) |
del 10q21 1 | 19 (7%) | 269 |
0.12 (0.166) |
0.00016 (0.000614) |
0.762 (0.805) |
0.0422 (0.0679) |
1e-05 (5.38e-05) |
0.0009 (0.0029) |
0.0231 (0.0414) |
0.794 (0.833) |
0.0446 (0.0714) |
0.00733 (0.0154) |
del 11q23 3 | 29 (10%) | 259 |
0.211 (0.274) |
0.00047 (0.00164) |
0.338 (0.417) |
0.041 (0.0666) |
0.0001 (0.000394) |
0.00159 (0.00459) |
0.0319 (0.0538) |
0.371 (0.446) |
0.0148 (0.028) |
0.00573 (0.0128) |
del 22q12 2 | 63 (22%) | 225 |
0.00231 (0.00647) |
1e-05 (5.38e-05) |
0.441 (0.51) |
0.00637 (0.014) |
1e-05 (5.38e-05) |
1e-05 (5.38e-05) |
5e-05 (0.000215) |
0.749 (0.798) |
0.0956 (0.139) |
0.00646 (0.0141) |
del 1p36 31 | 54 (19%) | 234 |
2e-05 (9.82e-05) |
1e-05 (5.38e-05) |
0.416 (0.49) |
0.0894 (0.133) |
1e-05 (5.38e-05) |
1e-05 (5.38e-05) |
0.00489 (0.0111) |
0.874 (0.907) |
0.0531 (0.083) |
0.0027 (0.00703) |
del 2q22 1 | 10 (3%) | 278 |
0.0359 (0.0594) |
0.00152 (0.00448) |
0.00622 (0.0138) |
0.717 (0.766) |
3e-05 (0.000135) |
0.00729 (0.0154) |
0.0135 (0.0262) |
1 (1.00) |
0.368 (0.444) |
0.411 (0.488) |
del 2q37 3 | 12 (4%) | 276 |
0.00816 (0.0169) |
0.00156 (0.00455) |
0.00055 (0.0019) |
0.214 (0.277) |
0.0246 (0.0433) |
0.00241 (0.00667) |
0.0174 (0.0321) |
0.291 (0.363) |
0.0576 (0.0881) |
0.444 (0.512) |
del 6q25 3 | 32 (11%) | 256 |
0.0119 (0.0239) |
1e-05 (5.38e-05) |
0.697 (0.748) |
0.0188 (0.0342) |
1e-05 (5.38e-05) |
1e-05 (5.38e-05) |
0.0278 (0.0481) |
1 (1.00) |
0.0696 (0.105) |
0.0554 (0.0857) |
del 14q11 2 | 51 (18%) | 237 |
0.00016 (0.000614) |
0.00119 (0.00362) |
0.0635 (0.0967) |
0.00447 (0.0104) |
1e-05 (5.38e-05) |
1e-05 (5.38e-05) |
0.118 (0.166) |
0.959 (0.981) |
0.0557 (0.0857) |
0.0148 (0.028) |
del 15q13 3 | 35 (12%) | 253 |
0.00282 (0.00724) |
3e-05 (0.000135) |
0.12 (0.166) |
0.0312 (0.0533) |
1e-05 (5.38e-05) |
1e-05 (5.38e-05) |
0.103 (0.148) |
0.108 (0.155) |
0.0926 (0.136) |
0.0174 (0.0321) |
amp 5q35 3 | 37 (13%) | 251 |
9e-05 (0.00036) |
0.00028 (0.00102) |
0.535 (0.602) |
0.618 (0.681) |
0.00142 (0.00428) |
1e-05 (5.38e-05) |
0.436 (0.507) |
0.0412 (0.0666) |
0.422 (0.495) |
0.126 (0.173) |
del 11q22 3 | 31 (11%) | 257 |
0.185 (0.246) |
0.00472 (0.0109) |
0.639 (0.702) |
0.102 (0.148) |
5e-05 (0.000215) |
0.00243 (0.00667) |
0.112 (0.158) |
0.429 (0.501) |
0.00672 (0.0144) |
0.00271 (0.00703) |
del 19q13 42 | 19 (7%) | 269 |
1e-05 (5.38e-05) |
0.00068 (0.00227) |
0.792 (0.833) |
0.415 (0.49) |
8e-05 (0.000329) |
0.00344 (0.00838) |
0.00658 (0.0143) |
0.472 (0.536) |
0.664 (0.723) |
0.21 (0.274) |
amp 2p23 2 | 45 (16%) | 243 |
1e-05 (5.38e-05) |
2e-05 (9.82e-05) |
0.762 (0.805) |
0.0487 (0.077) |
0.459 (0.527) |
0.952 (0.977) |
0.0317 (0.0538) |
0.179 (0.239) |
0.654 (0.715) |
0.541 (0.606) |
del 6p12 3 | 26 (9%) | 262 |
0.0147 (0.028) |
1e-05 (5.38e-05) |
1 (1.00) |
0.237 (0.303) |
2e-05 (9.82e-05) |
0.001 (0.00318) |
0.461 (0.527) |
0.594 (0.657) |
0.393 (0.468) |
0.189 (0.249) |
del 16q24 2 | 12 (4%) | 276 |
0.171 (0.23) |
0.00306 (0.00772) |
0.224 (0.289) |
0.0953 (0.139) |
0.00573 (0.0128) |
0.0021 (0.00594) |
0.513 (0.579) |
0.313 (0.388) |
0.0259 (0.0454) |
0.172 (0.23) |
del 19p13 3 | 23 (8%) | 265 |
1e-05 (5.38e-05) |
0.003 (0.00764) |
0.891 (0.921) |
0.81 (0.846) |
0.00396 (0.0094) |
0.00442 (0.0104) |
0.123 (0.17) |
0.195 (0.257) |
0.156 (0.212) |
0.106 (0.153) |
amp 2q32 1 | 53 (18%) | 235 |
1e-05 (5.38e-05) |
2e-05 (9.82e-05) |
0.837 (0.871) |
0.116 (0.163) |
0.143 (0.196) |
0.937 (0.965) |
0.0342 (0.0569) |
0.351 (0.43) |
1 (1.00) |
0.307 (0.382) |
del 2p12 | 8 (3%) | 280 |
0.265 (0.336) |
0.00188 (0.00537) |
0.17 (0.23) |
0.671 (0.728) |
0.0374 (0.0615) |
0.11 (0.157) |
0.00944 (0.0193) |
0.27 (0.34) |
0.697 (0.748) |
1 (1.00) |
del 5p15 33 | 13 (5%) | 275 |
0.0925 (0.136) |
0.00667 (0.0144) |
0.68 (0.735) |
0.0783 (0.118) |
0.0152 (0.0285) |
0.00089 (0.0029) |
0.367 (0.444) |
0.227 (0.292) |
0.34 (0.418) |
0.577 (0.641) |
P value = 1e-05 (Fisher's exact test), Q value = 5.4e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 106 | 73 | 49 | 60 |
AMP PEAK 1(2P23.2) MUTATED | 5 | 3 | 28 | 9 |
AMP PEAK 1(2P23.2) WILD-TYPE | 101 | 70 | 21 | 51 |
P value = 2e-05 (Fisher's exact test), Q value = 9.8e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 56 | 42 | 59 | 57 | 29 | 29 |
AMP PEAK 1(2P23.2) MUTATED | 5 | 2 | 2 | 19 | 5 | 9 |
AMP PEAK 1(2P23.2) WILD-TYPE | 51 | 40 | 57 | 38 | 24 | 20 |
P value = 0.0487 (Fisher's exact test), Q value = 0.077
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 39 | 66 | 65 | 43 |
AMP PEAK 1(2P23.2) MUTATED | 7 | 8 | 15 | 2 |
AMP PEAK 1(2P23.2) WILD-TYPE | 32 | 58 | 50 | 41 |
P value = 0.0317 (Fisher's exact test), Q value = 0.054
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 29 | 37 | 66 | 43 | 80 | 33 |
AMP PEAK 1(2P23.2) MUTATED | 3 | 1 | 17 | 9 | 11 | 4 |
AMP PEAK 1(2P23.2) WILD-TYPE | 26 | 36 | 49 | 34 | 69 | 29 |
P value = 1e-05 (Fisher's exact test), Q value = 5.4e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 106 | 73 | 49 | 60 |
AMP PEAK 2(2Q32.1) MUTATED | 9 | 4 | 30 | 10 |
AMP PEAK 2(2Q32.1) WILD-TYPE | 97 | 69 | 19 | 50 |
P value = 2e-05 (Fisher's exact test), Q value = 9.8e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 56 | 42 | 59 | 57 | 29 | 29 |
AMP PEAK 2(2Q32.1) MUTATED | 6 | 5 | 2 | 22 | 7 | 8 |
AMP PEAK 2(2Q32.1) WILD-TYPE | 50 | 37 | 57 | 35 | 22 | 21 |
P value = 0.0342 (Fisher's exact test), Q value = 0.057
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 29 | 37 | 66 | 43 | 80 | 33 |
AMP PEAK 2(2Q32.1) MUTATED | 4 | 2 | 17 | 13 | 13 | 4 |
AMP PEAK 2(2Q32.1) WILD-TYPE | 25 | 35 | 49 | 30 | 67 | 29 |
P value = 1e-05 (Fisher's exact test), Q value = 5.4e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 106 | 73 | 49 | 60 |
AMP PEAK 3(3Q26.31) MUTATED | 25 | 27 | 37 | 12 |
AMP PEAK 3(3Q26.31) WILD-TYPE | 81 | 46 | 12 | 48 |
P value = 1e-05 (Fisher's exact test), Q value = 5.4e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 56 | 42 | 59 | 57 | 29 | 29 |
AMP PEAK 3(3Q26.31) MUTATED | 20 | 9 | 15 | 38 | 7 | 6 |
AMP PEAK 3(3Q26.31) WILD-TYPE | 36 | 33 | 44 | 19 | 22 | 23 |
P value = 0.00151 (Fisher's exact test), Q value = 0.0045
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 39 | 66 | 65 | 43 |
AMP PEAK 3(3Q26.31) MUTATED | 23 | 24 | 16 | 10 |
AMP PEAK 3(3Q26.31) WILD-TYPE | 16 | 42 | 49 | 33 |
P value = 1e-05 (Fisher's exact test), Q value = 5.4e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 32 | 90 | 70 | 32 | 64 |
AMP PEAK 3(3Q26.31) MUTATED | 22 | 36 | 28 | 7 | 8 |
AMP PEAK 3(3Q26.31) WILD-TYPE | 10 | 54 | 42 | 25 | 56 |
P value = 0.0121 (Fisher's exact test), Q value = 0.024
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 123 | 47 |
AMP PEAK 3(3Q26.31) MUTATED | 37 | 54 | 10 |
AMP PEAK 3(3Q26.31) WILD-TYPE | 81 | 69 | 37 |
P value = 0.00255 (Fisher's exact test), Q value = 0.0069
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 29 | 37 | 66 | 43 | 80 | 33 |
AMP PEAK 3(3Q26.31) MUTATED | 11 | 12 | 33 | 7 | 22 | 16 |
AMP PEAK 3(3Q26.31) WILD-TYPE | 18 | 25 | 33 | 36 | 58 | 17 |
P value = 0.00344 (Fisher's exact test), Q value = 0.0084
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 120 | 80 | 88 |
AMP PEAK 3(3Q26.31) MUTATED | 41 | 39 | 21 |
AMP PEAK 3(3Q26.31) WILD-TYPE | 79 | 41 | 67 |
P value = 0.00484 (Fisher's exact test), Q value = 0.011
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 92 | 99 | 31 |
AMP PEAK 3(3Q26.31) MUTATED | 41 | 25 | 6 |
AMP PEAK 3(3Q26.31) WILD-TYPE | 51 | 74 | 25 |
P value = 9e-05 (Fisher's exact test), Q value = 0.00036
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 106 | 73 | 49 | 60 |
AMP PEAK 4(5Q35.3) MUTATED | 16 | 1 | 4 | 16 |
AMP PEAK 4(5Q35.3) WILD-TYPE | 90 | 72 | 45 | 44 |
P value = 0.00028 (Fisher's exact test), Q value = 0.001
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 56 | 42 | 59 | 57 | 29 | 29 |
AMP PEAK 4(5Q35.3) MUTATED | 10 | 5 | 2 | 2 | 10 | 5 |
AMP PEAK 4(5Q35.3) WILD-TYPE | 46 | 37 | 57 | 55 | 19 | 24 |
P value = 0.00142 (Fisher's exact test), Q value = 0.0043
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 32 | 90 | 70 | 32 | 64 |
AMP PEAK 4(5Q35.3) MUTATED | 5 | 4 | 12 | 1 | 15 |
AMP PEAK 4(5Q35.3) WILD-TYPE | 27 | 86 | 58 | 31 | 49 |
P value = 1e-05 (Fisher's exact test), Q value = 5.4e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 123 | 47 |
AMP PEAK 4(5Q35.3) MUTATED | 29 | 4 | 4 |
AMP PEAK 4(5Q35.3) WILD-TYPE | 89 | 119 | 43 |
P value = 0.0412 (Fisher's exact test), Q value = 0.067
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 120 | 80 | 88 |
AMP PEAK 4(5Q35.3) MUTATED | 22 | 5 | 10 |
AMP PEAK 4(5Q35.3) WILD-TYPE | 98 | 75 | 78 |
P value = 1e-05 (Fisher's exact test), Q value = 5.4e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 106 | 73 | 49 | 60 |
AMP PEAK 5(7P11.2) MUTATED | 30 | 71 | 38 | 36 |
AMP PEAK 5(7P11.2) WILD-TYPE | 76 | 2 | 11 | 24 |
P value = 1e-05 (Fisher's exact test), Q value = 5.4e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 56 | 42 | 59 | 57 | 29 | 29 |
AMP PEAK 5(7P11.2) MUTATED | 28 | 21 | 47 | 50 | 7 | 11 |
AMP PEAK 5(7P11.2) WILD-TYPE | 28 | 21 | 12 | 7 | 22 | 18 |
P value = 0.0113 (Fisher's exact test), Q value = 0.023
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 75 | 82 | 56 |
AMP PEAK 5(7P11.2) MUTATED | 46 | 60 | 27 |
AMP PEAK 5(7P11.2) WILD-TYPE | 29 | 22 | 29 |
P value = 1e-05 (Fisher's exact test), Q value = 5.4e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 39 | 66 | 65 | 43 |
AMP PEAK 5(7P11.2) MUTATED | 31 | 53 | 29 | 20 |
AMP PEAK 5(7P11.2) WILD-TYPE | 8 | 13 | 36 | 23 |
P value = 1e-05 (Fisher's exact test), Q value = 5.4e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 32 | 90 | 70 | 32 | 64 |
AMP PEAK 5(7P11.2) MUTATED | 28 | 79 | 39 | 13 | 16 |
AMP PEAK 5(7P11.2) WILD-TYPE | 4 | 11 | 31 | 19 | 48 |
P value = 1e-05 (Fisher's exact test), Q value = 5.4e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 123 | 47 |
AMP PEAK 5(7P11.2) MUTATED | 55 | 104 | 16 |
AMP PEAK 5(7P11.2) WILD-TYPE | 63 | 19 | 31 |
P value = 8e-05 (Fisher's exact test), Q value = 0.00033
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 29 | 37 | 66 | 43 | 80 | 33 |
AMP PEAK 5(7P11.2) MUTATED | 18 | 20 | 52 | 14 | 47 | 24 |
AMP PEAK 5(7P11.2) WILD-TYPE | 11 | 17 | 14 | 29 | 33 | 9 |
P value = 0.00041 (Fisher's exact test), Q value = 0.0015
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 120 | 80 | 88 |
AMP PEAK 5(7P11.2) MUTATED | 66 | 63 | 46 |
AMP PEAK 5(7P11.2) WILD-TYPE | 54 | 17 | 42 |
P value = 1e-05 (Fisher's exact test), Q value = 5.4e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 71 | 75 | 76 |
AMP PEAK 5(7P11.2) MUTATED | 33 | 61 | 38 |
AMP PEAK 5(7P11.2) WILD-TYPE | 38 | 14 | 38 |
P value = 3e-05 (Fisher's exact test), Q value = 0.00014
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 92 | 99 | 31 |
AMP PEAK 5(7P11.2) MUTATED | 61 | 44 | 27 |
AMP PEAK 5(7P11.2) WILD-TYPE | 31 | 55 | 4 |
P value = 1e-05 (Fisher's exact test), Q value = 5.4e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 106 | 73 | 49 | 60 |
AMP PEAK 6(7Q31.2) MUTATED | 31 | 73 | 38 | 35 |
AMP PEAK 6(7Q31.2) WILD-TYPE | 75 | 0 | 11 | 25 |
P value = 1e-05 (Fisher's exact test), Q value = 5.4e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 56 | 42 | 59 | 57 | 29 | 29 |
AMP PEAK 6(7Q31.2) MUTATED | 28 | 21 | 48 | 50 | 7 | 12 |
AMP PEAK 6(7Q31.2) WILD-TYPE | 28 | 21 | 11 | 7 | 22 | 17 |
P value = 0.0203 (Fisher's exact test), Q value = 0.037
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 75 | 82 | 56 |
AMP PEAK 6(7Q31.2) MUTATED | 46 | 60 | 28 |
AMP PEAK 6(7Q31.2) WILD-TYPE | 29 | 22 | 28 |
P value = 3e-05 (Fisher's exact test), Q value = 0.00014
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 39 | 66 | 65 | 43 |
AMP PEAK 6(7Q31.2) MUTATED | 31 | 53 | 30 | 20 |
AMP PEAK 6(7Q31.2) WILD-TYPE | 8 | 13 | 35 | 23 |
P value = 1e-05 (Fisher's exact test), Q value = 5.4e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 32 | 90 | 70 | 32 | 64 |
AMP PEAK 6(7Q31.2) MUTATED | 28 | 80 | 39 | 13 | 17 |
AMP PEAK 6(7Q31.2) WILD-TYPE | 4 | 10 | 31 | 19 | 47 |
P value = 1e-05 (Fisher's exact test), Q value = 5.4e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 123 | 47 |
AMP PEAK 6(7Q31.2) MUTATED | 54 | 105 | 18 |
AMP PEAK 6(7Q31.2) WILD-TYPE | 64 | 18 | 29 |
P value = 0.00068 (Fisher's exact test), Q value = 0.0023
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 29 | 37 | 66 | 43 | 80 | 33 |
AMP PEAK 6(7Q31.2) MUTATED | 18 | 20 | 52 | 16 | 48 | 23 |
AMP PEAK 6(7Q31.2) WILD-TYPE | 11 | 17 | 14 | 27 | 32 | 10 |
P value = 0.00059 (Fisher's exact test), Q value = 0.002
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 120 | 80 | 88 |
AMP PEAK 6(7Q31.2) MUTATED | 67 | 63 | 47 |
AMP PEAK 6(7Q31.2) WILD-TYPE | 53 | 17 | 41 |
P value = 1e-05 (Fisher's exact test), Q value = 5.4e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 71 | 75 | 76 |
AMP PEAK 6(7Q31.2) MUTATED | 33 | 62 | 38 |
AMP PEAK 6(7Q31.2) WILD-TYPE | 38 | 13 | 38 |
P value = 3e-05 (Fisher's exact test), Q value = 0.00014
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 92 | 99 | 31 |
AMP PEAK 6(7Q31.2) MUTATED | 62 | 44 | 27 |
AMP PEAK 6(7Q31.2) WILD-TYPE | 30 | 55 | 4 |
P value = 1e-05 (Fisher's exact test), Q value = 5.4e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 106 | 73 | 49 | 60 |
AMP PEAK 7(17Q23.2) MUTATED | 31 | 71 | 44 | 53 |
AMP PEAK 7(17Q23.2) WILD-TYPE | 75 | 2 | 5 | 7 |
P value = 1e-05 (Fisher's exact test), Q value = 5.4e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 56 | 42 | 59 | 57 | 29 | 29 |
AMP PEAK 7(17Q23.2) MUTATED | 32 | 24 | 49 | 54 | 14 | 14 |
AMP PEAK 7(17Q23.2) WILD-TYPE | 24 | 18 | 10 | 3 | 15 | 15 |
P value = 0.00346 (Fisher's exact test), Q value = 0.0084
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 75 | 82 | 56 |
AMP PEAK 7(17Q23.2) MUTATED | 55 | 64 | 29 |
AMP PEAK 7(17Q23.2) WILD-TYPE | 20 | 18 | 27 |
P value = 9e-05 (Fisher's exact test), Q value = 0.00036
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 39 | 66 | 65 | 43 |
AMP PEAK 7(17Q23.2) MUTATED | 35 | 53 | 36 | 24 |
AMP PEAK 7(17Q23.2) WILD-TYPE | 4 | 13 | 29 | 19 |
P value = 1e-05 (Fisher's exact test), Q value = 5.4e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 32 | 90 | 70 | 32 | 64 |
AMP PEAK 7(17Q23.2) MUTATED | 28 | 82 | 43 | 14 | 32 |
AMP PEAK 7(17Q23.2) WILD-TYPE | 4 | 8 | 27 | 18 | 32 |
P value = 1e-05 (Fisher's exact test), Q value = 5.4e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 123 | 47 |
AMP PEAK 7(17Q23.2) MUTATED | 72 | 109 | 18 |
AMP PEAK 7(17Q23.2) WILD-TYPE | 46 | 14 | 29 |
P value = 0.00882 (Fisher's exact test), Q value = 0.018
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 29 | 37 | 66 | 43 | 80 | 33 |
AMP PEAK 7(17Q23.2) MUTATED | 21 | 23 | 56 | 23 | 56 | 20 |
AMP PEAK 7(17Q23.2) WILD-TYPE | 8 | 14 | 10 | 20 | 24 | 13 |
P value = 0.00773 (Fisher's exact test), Q value = 0.016
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 120 | 80 | 88 |
AMP PEAK 7(17Q23.2) MUTATED | 76 | 66 | 57 |
AMP PEAK 7(17Q23.2) WILD-TYPE | 44 | 14 | 31 |
P value = 2e-04 (Fisher's exact test), Q value = 0.00076
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 71 | 75 | 76 |
AMP PEAK 7(17Q23.2) MUTATED | 44 | 64 | 43 |
AMP PEAK 7(17Q23.2) WILD-TYPE | 27 | 11 | 33 |
P value = 0.00036 (Fisher's exact test), Q value = 0.0013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 92 | 99 | 31 |
AMP PEAK 7(17Q23.2) MUTATED | 68 | 55 | 28 |
AMP PEAK 7(17Q23.2) WILD-TYPE | 24 | 44 | 3 |
P value = 2e-05 (Fisher's exact test), Q value = 9.8e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 106 | 73 | 49 | 60 |
DEL PEAK 1(1P36.31) MUTATED | 24 | 1 | 10 | 19 |
DEL PEAK 1(1P36.31) WILD-TYPE | 82 | 72 | 39 | 41 |
P value = 1e-05 (Fisher's exact test), Q value = 5.4e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 56 | 42 | 59 | 57 | 29 | 29 |
DEL PEAK 1(1P36.31) MUTATED | 12 | 2 | 1 | 5 | 19 | 12 |
DEL PEAK 1(1P36.31) WILD-TYPE | 44 | 40 | 58 | 52 | 10 | 17 |
P value = 1e-05 (Fisher's exact test), Q value = 5.4e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 32 | 90 | 70 | 32 | 64 |
DEL PEAK 1(1P36.31) MUTATED | 1 | 4 | 9 | 5 | 35 |
DEL PEAK 1(1P36.31) WILD-TYPE | 31 | 86 | 61 | 27 | 29 |
P value = 1e-05 (Fisher's exact test), Q value = 5.4e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 123 | 47 |
DEL PEAK 1(1P36.31) MUTATED | 28 | 7 | 19 |
DEL PEAK 1(1P36.31) WILD-TYPE | 90 | 116 | 28 |
P value = 0.00489 (Fisher's exact test), Q value = 0.011
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 29 | 37 | 66 | 43 | 80 | 33 |
DEL PEAK 1(1P36.31) MUTATED | 5 | 10 | 6 | 16 | 14 | 3 |
DEL PEAK 1(1P36.31) WILD-TYPE | 24 | 27 | 60 | 27 | 66 | 30 |
P value = 0.0027 (Fisher's exact test), Q value = 0.007
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 92 | 99 | 31 |
DEL PEAK 1(1P36.31) MUTATED | 15 | 24 | 0 |
DEL PEAK 1(1P36.31) WILD-TYPE | 77 | 75 | 31 |
P value = 0.00188 (Fisher's exact test), Q value = 0.0054
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 56 | 42 | 59 | 57 | 29 | 29 |
DEL PEAK 2(2P12) MUTATED | 1 | 1 | 1 | 0 | 5 | 0 |
DEL PEAK 2(2P12) WILD-TYPE | 55 | 41 | 58 | 57 | 24 | 29 |
P value = 0.0374 (Fisher's exact test), Q value = 0.062
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 32 | 90 | 70 | 32 | 64 |
DEL PEAK 2(2P12) MUTATED | 0 | 0 | 2 | 1 | 5 |
DEL PEAK 2(2P12) WILD-TYPE | 32 | 90 | 68 | 31 | 59 |
P value = 0.00944 (Fisher's exact test), Q value = 0.019
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 29 | 37 | 66 | 43 | 80 | 33 |
DEL PEAK 2(2P12) MUTATED | 1 | 2 | 0 | 4 | 0 | 1 |
DEL PEAK 2(2P12) WILD-TYPE | 28 | 35 | 66 | 39 | 80 | 32 |
P value = 0.0359 (Fisher's exact test), Q value = 0.059
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 106 | 73 | 49 | 60 |
DEL PEAK 3(2Q22.1) MUTATED | 6 | 0 | 0 | 4 |
DEL PEAK 3(2Q22.1) WILD-TYPE | 100 | 73 | 49 | 56 |
P value = 0.00152 (Fisher's exact test), Q value = 0.0045
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 56 | 42 | 59 | 57 | 29 | 29 |
DEL PEAK 3(2Q22.1) MUTATED | 4 | 0 | 0 | 0 | 4 | 1 |
DEL PEAK 3(2Q22.1) WILD-TYPE | 52 | 42 | 59 | 57 | 25 | 28 |
P value = 0.00622 (Fisher's exact test), Q value = 0.014
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 75 | 82 | 56 |
DEL PEAK 3(2Q22.1) MUTATED | 2 | 0 | 5 |
DEL PEAK 3(2Q22.1) WILD-TYPE | 73 | 82 | 51 |
P value = 3e-05 (Fisher's exact test), Q value = 0.00014
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 32 | 90 | 70 | 32 | 64 |
DEL PEAK 3(2Q22.1) MUTATED | 0 | 0 | 1 | 0 | 9 |
DEL PEAK 3(2Q22.1) WILD-TYPE | 32 | 90 | 69 | 32 | 55 |
P value = 0.00729 (Fisher's exact test), Q value = 0.015
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 123 | 47 |
DEL PEAK 3(2Q22.1) MUTATED | 7 | 0 | 3 |
DEL PEAK 3(2Q22.1) WILD-TYPE | 111 | 123 | 44 |
P value = 0.0135 (Fisher's exact test), Q value = 0.026
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 29 | 37 | 66 | 43 | 80 | 33 |
DEL PEAK 3(2Q22.1) MUTATED | 4 | 2 | 0 | 2 | 1 | 1 |
DEL PEAK 3(2Q22.1) WILD-TYPE | 25 | 35 | 66 | 41 | 79 | 32 |
P value = 0.00816 (Fisher's exact test), Q value = 0.017
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 106 | 73 | 49 | 60 |
DEL PEAK 4(2Q37.3) MUTATED | 10 | 0 | 1 | 1 |
DEL PEAK 4(2Q37.3) WILD-TYPE | 96 | 73 | 48 | 59 |
P value = 0.00156 (Fisher's exact test), Q value = 0.0045
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 56 | 42 | 59 | 57 | 29 | 29 |
DEL PEAK 4(2Q37.3) MUTATED | 2 | 2 | 0 | 0 | 5 | 1 |
DEL PEAK 4(2Q37.3) WILD-TYPE | 54 | 40 | 59 | 57 | 24 | 28 |
P value = 0.00055 (Fisher's exact test), Q value = 0.0019
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 75 | 82 | 56 |
DEL PEAK 4(2Q37.3) MUTATED | 0 | 1 | 7 |
DEL PEAK 4(2Q37.3) WILD-TYPE | 75 | 81 | 49 |
P value = 0.0246 (Fisher's exact test), Q value = 0.043
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 32 | 90 | 70 | 32 | 64 |
DEL PEAK 4(2Q37.3) MUTATED | 1 | 0 | 4 | 1 | 6 |
DEL PEAK 4(2Q37.3) WILD-TYPE | 31 | 90 | 66 | 31 | 58 |
P value = 0.00241 (Fisher's exact test), Q value = 0.0067
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 123 | 47 |
DEL PEAK 4(2Q37.3) MUTATED | 9 | 0 | 3 |
DEL PEAK 4(2Q37.3) WILD-TYPE | 109 | 123 | 44 |
P value = 0.0174 (Fisher's exact test), Q value = 0.032
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 29 | 37 | 66 | 43 | 80 | 33 |
DEL PEAK 4(2Q37.3) MUTATED | 4 | 3 | 0 | 2 | 3 | 0 |
DEL PEAK 4(2Q37.3) WILD-TYPE | 25 | 34 | 66 | 41 | 77 | 33 |
P value = 1e-05 (Fisher's exact test), Q value = 5.4e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 106 | 73 | 49 | 60 |
DEL PEAK 5(3P22.1) MUTATED | 9 | 0 | 1 | 15 |
DEL PEAK 5(3P22.1) WILD-TYPE | 97 | 73 | 48 | 45 |
P value = 1e-05 (Fisher's exact test), Q value = 5.4e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 56 | 42 | 59 | 57 | 29 | 29 |
DEL PEAK 5(3P22.1) MUTATED | 5 | 4 | 0 | 0 | 11 | 4 |
DEL PEAK 5(3P22.1) WILD-TYPE | 51 | 38 | 59 | 57 | 18 | 25 |
P value = 0.0296 (Fisher's exact test), Q value = 0.051
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 39 | 66 | 65 | 43 |
DEL PEAK 5(3P22.1) MUTATED | 3 | 4 | 12 | 1 |
DEL PEAK 5(3P22.1) WILD-TYPE | 36 | 62 | 53 | 42 |
P value = 1e-05 (Fisher's exact test), Q value = 5.4e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 32 | 90 | 70 | 32 | 64 |
DEL PEAK 5(3P22.1) MUTATED | 0 | 0 | 6 | 1 | 18 |
DEL PEAK 5(3P22.1) WILD-TYPE | 32 | 90 | 64 | 31 | 46 |
P value = 1e-05 (Fisher's exact test), Q value = 5.4e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 123 | 47 |
DEL PEAK 5(3P22.1) MUTATED | 21 | 0 | 4 |
DEL PEAK 5(3P22.1) WILD-TYPE | 97 | 123 | 43 |
P value = 0.0143 (Fisher's exact test), Q value = 0.028
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 29 | 37 | 66 | 43 | 80 | 33 |
DEL PEAK 5(3P22.1) MUTATED | 1 | 4 | 1 | 9 | 8 | 2 |
DEL PEAK 5(3P22.1) WILD-TYPE | 28 | 33 | 65 | 34 | 72 | 31 |
P value = 0.0455 (Fisher's exact test), Q value = 0.072
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 120 | 80 | 88 |
DEL PEAK 5(3P22.1) MUTATED | 13 | 2 | 10 |
DEL PEAK 5(3P22.1) WILD-TYPE | 107 | 78 | 78 |
P value = 0.00266 (Fisher's exact test), Q value = 0.007
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 92 | 99 | 31 |
DEL PEAK 5(3P22.1) MUTATED | 6 | 18 | 0 |
DEL PEAK 5(3P22.1) WILD-TYPE | 86 | 81 | 31 |
P value = 0.00116 (Fisher's exact test), Q value = 0.0036
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 106 | 73 | 49 | 60 |
DEL PEAK 6(4Q34.3) MUTATED | 11 | 1 | 7 | 13 |
DEL PEAK 6(4Q34.3) WILD-TYPE | 95 | 72 | 42 | 47 |
P value = 1e-05 (Fisher's exact test), Q value = 5.4e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 56 | 42 | 59 | 57 | 29 | 29 |
DEL PEAK 6(4Q34.3) MUTATED | 4 | 5 | 0 | 2 | 8 | 11 |
DEL PEAK 6(4Q34.3) WILD-TYPE | 52 | 37 | 59 | 55 | 21 | 18 |
P value = 0.0128 (Fisher's exact test), Q value = 0.025
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 39 | 66 | 65 | 43 |
DEL PEAK 6(4Q34.3) MUTATED | 2 | 4 | 15 | 4 |
DEL PEAK 6(4Q34.3) WILD-TYPE | 37 | 62 | 50 | 39 |
P value = 1e-05 (Fisher's exact test), Q value = 5.4e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 32 | 90 | 70 | 32 | 64 |
DEL PEAK 6(4Q34.3) MUTATED | 0 | 1 | 7 | 4 | 20 |
DEL PEAK 6(4Q34.3) WILD-TYPE | 32 | 89 | 63 | 28 | 44 |
P value = 1e-05 (Fisher's exact test), Q value = 5.4e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 123 | 47 |
DEL PEAK 6(4Q34.3) MUTATED | 18 | 2 | 12 |
DEL PEAK 6(4Q34.3) WILD-TYPE | 100 | 121 | 35 |
P value = 0.0269 (Fisher's exact test), Q value = 0.047
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 71 | 75 | 76 |
DEL PEAK 6(4Q34.3) MUTATED | 11 | 3 | 12 |
DEL PEAK 6(4Q34.3) WILD-TYPE | 60 | 72 | 64 |
P value = 0.00347 (Fisher's exact test), Q value = 0.0084
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 92 | 99 | 31 |
DEL PEAK 6(4Q34.3) MUTATED | 7 | 19 | 0 |
DEL PEAK 6(4Q34.3) WILD-TYPE | 85 | 80 | 31 |
P value = 0.00667 (Fisher's exact test), Q value = 0.014
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 56 | 42 | 59 | 57 | 29 | 29 |
DEL PEAK 7(5P15.33) MUTATED | 1 | 1 | 1 | 2 | 2 | 6 |
DEL PEAK 7(5P15.33) WILD-TYPE | 55 | 41 | 58 | 55 | 27 | 23 |
P value = 0.0152 (Fisher's exact test), Q value = 0.029
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 32 | 90 | 70 | 32 | 64 |
DEL PEAK 7(5P15.33) MUTATED | 0 | 1 | 4 | 5 | 3 |
DEL PEAK 7(5P15.33) WILD-TYPE | 32 | 89 | 66 | 27 | 61 |
P value = 0.00089 (Fisher's exact test), Q value = 0.0029
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 123 | 47 |
DEL PEAK 7(5P15.33) MUTATED | 5 | 1 | 7 |
DEL PEAK 7(5P15.33) WILD-TYPE | 113 | 122 | 40 |
P value = 0.0403 (Fisher's exact test), Q value = 0.066
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 106 | 73 | 49 | 60 |
DEL PEAK 8(5Q35.2) MUTATED | 6 | 0 | 4 | 1 |
DEL PEAK 8(5Q35.2) WILD-TYPE | 100 | 73 | 45 | 59 |
P value = 1e-05 (Fisher's exact test), Q value = 5.4e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 56 | 42 | 59 | 57 | 29 | 29 |
DEL PEAK 8(5Q35.2) MUTATED | 1 | 1 | 0 | 0 | 0 | 8 |
DEL PEAK 8(5Q35.2) WILD-TYPE | 55 | 41 | 59 | 57 | 29 | 21 |
P value = 0.0336 (Fisher's exact test), Q value = 0.056
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 75 | 82 | 56 |
DEL PEAK 8(5Q35.2) MUTATED | 5 | 0 | 3 |
DEL PEAK 8(5Q35.2) WILD-TYPE | 70 | 82 | 53 |
P value = 0.00021 (Fisher's exact test), Q value = 0.00078
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 39 | 66 | 65 | 43 |
DEL PEAK 8(5Q35.2) MUTATED | 0 | 0 | 8 | 0 |
DEL PEAK 8(5Q35.2) WILD-TYPE | 39 | 66 | 57 | 43 |
P value = 0.00027 (Fisher's exact test), Q value = 0.00099
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 32 | 90 | 70 | 32 | 64 |
DEL PEAK 8(5Q35.2) MUTATED | 0 | 0 | 1 | 5 | 5 |
DEL PEAK 8(5Q35.2) WILD-TYPE | 32 | 90 | 69 | 27 | 59 |
P value = 1e-05 (Fisher's exact test), Q value = 5.4e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 123 | 47 |
DEL PEAK 8(5Q35.2) MUTATED | 3 | 0 | 8 |
DEL PEAK 8(5Q35.2) WILD-TYPE | 115 | 123 | 39 |
P value = 0.00077 (Fisher's exact test), Q value = 0.0025
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 120 | 80 | 88 |
DEL PEAK 8(5Q35.2) MUTATED | 2 | 0 | 9 |
DEL PEAK 8(5Q35.2) WILD-TYPE | 118 | 80 | 79 |
P value = 0.0032 (Fisher's exact test), Q value = 0.008
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 71 | 75 | 76 |
DEL PEAK 8(5Q35.2) MUTATED | 2 | 0 | 8 |
DEL PEAK 8(5Q35.2) WILD-TYPE | 69 | 75 | 68 |
P value = 0.0183 (Fisher's exact test), Q value = 0.033
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 92 | 99 | 31 |
DEL PEAK 8(5Q35.2) MUTATED | 1 | 9 | 0 |
DEL PEAK 8(5Q35.2) WILD-TYPE | 91 | 90 | 31 |
P value = 0.0147 (Fisher's exact test), Q value = 0.028
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 106 | 73 | 49 | 60 |
DEL PEAK 9(6P12.3) MUTATED | 7 | 2 | 8 | 9 |
DEL PEAK 9(6P12.3) WILD-TYPE | 99 | 71 | 41 | 51 |
P value = 1e-05 (Fisher's exact test), Q value = 5.4e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 56 | 42 | 59 | 57 | 29 | 29 |
DEL PEAK 9(6P12.3) MUTATED | 4 | 2 | 0 | 2 | 8 | 9 |
DEL PEAK 9(6P12.3) WILD-TYPE | 52 | 40 | 59 | 55 | 21 | 20 |
P value = 2e-05 (Fisher's exact test), Q value = 9.8e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 32 | 90 | 70 | 32 | 64 |
DEL PEAK 9(6P12.3) MUTATED | 0 | 3 | 5 | 1 | 17 |
DEL PEAK 9(6P12.3) WILD-TYPE | 32 | 87 | 65 | 31 | 47 |
P value = 0.001 (Fisher's exact test), Q value = 0.0032
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 123 | 47 |
DEL PEAK 9(6P12.3) MUTATED | 12 | 4 | 10 |
DEL PEAK 9(6P12.3) WILD-TYPE | 106 | 119 | 37 |
P value = 0.0119 (Fisher's exact test), Q value = 0.024
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 106 | 73 | 49 | 60 |
DEL PEAK 10(6Q25.3) MUTATED | 11 | 2 | 8 | 11 |
DEL PEAK 10(6Q25.3) WILD-TYPE | 95 | 71 | 41 | 49 |
P value = 1e-05 (Fisher's exact test), Q value = 5.4e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 56 | 42 | 59 | 57 | 29 | 29 |
DEL PEAK 10(6Q25.3) MUTATED | 6 | 2 | 0 | 2 | 11 | 10 |
DEL PEAK 10(6Q25.3) WILD-TYPE | 50 | 40 | 59 | 55 | 18 | 19 |
P value = 0.0188 (Fisher's exact test), Q value = 0.034
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 39 | 66 | 65 | 43 |
DEL PEAK 10(6Q25.3) MUTATED | 4 | 5 | 15 | 2 |
DEL PEAK 10(6Q25.3) WILD-TYPE | 35 | 61 | 50 | 41 |
P value = 1e-05 (Fisher's exact test), Q value = 5.4e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 32 | 90 | 70 | 32 | 64 |
DEL PEAK 10(6Q25.3) MUTATED | 0 | 2 | 6 | 2 | 22 |
DEL PEAK 10(6Q25.3) WILD-TYPE | 32 | 88 | 64 | 30 | 42 |
P value = 1e-05 (Fisher's exact test), Q value = 5.4e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 123 | 47 |
DEL PEAK 10(6Q25.3) MUTATED | 17 | 3 | 12 |
DEL PEAK 10(6Q25.3) WILD-TYPE | 101 | 120 | 35 |
P value = 0.0278 (Fisher's exact test), Q value = 0.048
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 29 | 37 | 66 | 43 | 80 | 33 |
DEL PEAK 10(6Q25.3) MUTATED | 4 | 5 | 5 | 10 | 8 | 0 |
DEL PEAK 10(6Q25.3) WILD-TYPE | 25 | 32 | 61 | 33 | 72 | 33 |
P value = 0.00269 (Fisher's exact test), Q value = 0.007
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 106 | 73 | 49 | 60 |
DEL PEAK 11(9P21.3) MUTATED | 19 | 3 | 4 | 14 |
DEL PEAK 11(9P21.3) WILD-TYPE | 87 | 70 | 45 | 46 |
P value = 1e-05 (Fisher's exact test), Q value = 5.4e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 56 | 42 | 59 | 57 | 29 | 29 |
DEL PEAK 11(9P21.3) MUTATED | 8 | 3 | 1 | 1 | 9 | 15 |
DEL PEAK 11(9P21.3) WILD-TYPE | 48 | 39 | 58 | 56 | 20 | 14 |
P value = 0.00112 (Fisher's exact test), Q value = 0.0035
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 39 | 66 | 65 | 43 |
DEL PEAK 11(9P21.3) MUTATED | 3 | 5 | 19 | 3 |
DEL PEAK 11(9P21.3) WILD-TYPE | 36 | 61 | 46 | 40 |
P value = 1e-05 (Fisher's exact test), Q value = 5.4e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 32 | 90 | 70 | 32 | 64 |
DEL PEAK 11(9P21.3) MUTATED | 1 | 1 | 5 | 5 | 28 |
DEL PEAK 11(9P21.3) WILD-TYPE | 31 | 89 | 65 | 27 | 36 |
P value = 1e-05 (Fisher's exact test), Q value = 5.4e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 123 | 47 |
DEL PEAK 11(9P21.3) MUTATED | 20 | 0 | 20 |
DEL PEAK 11(9P21.3) WILD-TYPE | 98 | 123 | 27 |
P value = 0.0125 (Fisher's exact test), Q value = 0.025
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 29 | 37 | 66 | 43 | 80 | 33 |
DEL PEAK 11(9P21.3) MUTATED | 4 | 4 | 4 | 11 | 16 | 1 |
DEL PEAK 11(9P21.3) WILD-TYPE | 25 | 33 | 62 | 32 | 64 | 32 |
P value = 0.0124 (Fisher's exact test), Q value = 0.025
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 120 | 80 | 88 |
DEL PEAK 11(9P21.3) MUTATED | 10 | 10 | 20 |
DEL PEAK 11(9P21.3) WILD-TYPE | 110 | 70 | 68 |
P value = 0.00111 (Fisher's exact test), Q value = 0.0035
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 71 | 75 | 76 |
DEL PEAK 11(9P21.3) MUTATED | 9 | 4 | 20 |
DEL PEAK 11(9P21.3) WILD-TYPE | 62 | 71 | 56 |
P value = 6e-05 (Fisher's exact test), Q value = 0.00025
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 92 | 99 | 31 |
DEL PEAK 11(9P21.3) MUTATED | 7 | 26 | 0 |
DEL PEAK 11(9P21.3) WILD-TYPE | 85 | 73 | 31 |
P value = 0.00016 (Fisher's exact test), Q value = 0.00061
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 56 | 42 | 59 | 57 | 29 | 29 |
DEL PEAK 12(10Q21.1) MUTATED | 2 | 3 | 0 | 2 | 7 | 5 |
DEL PEAK 12(10Q21.1) WILD-TYPE | 54 | 39 | 59 | 55 | 22 | 24 |
P value = 0.0422 (Fisher's exact test), Q value = 0.068
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 39 | 66 | 65 | 43 |
DEL PEAK 12(10Q21.1) MUTATED | 1 | 4 | 10 | 1 |
DEL PEAK 12(10Q21.1) WILD-TYPE | 38 | 62 | 55 | 42 |
P value = 1e-05 (Fisher's exact test), Q value = 5.4e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 32 | 90 | 70 | 32 | 64 |
DEL PEAK 12(10Q21.1) MUTATED | 0 | 0 | 5 | 1 | 13 |
DEL PEAK 12(10Q21.1) WILD-TYPE | 32 | 90 | 65 | 31 | 51 |
P value = 9e-04 (Fisher's exact test), Q value = 0.0029
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 123 | 47 |
DEL PEAK 12(10Q21.1) MUTATED | 13 | 1 | 5 |
DEL PEAK 12(10Q21.1) WILD-TYPE | 105 | 122 | 42 |
P value = 0.0231 (Fisher's exact test), Q value = 0.041
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 29 | 37 | 66 | 43 | 80 | 33 |
DEL PEAK 12(10Q21.1) MUTATED | 2 | 4 | 0 | 6 | 6 | 1 |
DEL PEAK 12(10Q21.1) WILD-TYPE | 27 | 33 | 66 | 37 | 74 | 32 |
P value = 0.0446 (Fisher's exact test), Q value = 0.071
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 71 | 75 | 76 |
DEL PEAK 12(10Q21.1) MUTATED | 5 | 1 | 8 |
DEL PEAK 12(10Q21.1) WILD-TYPE | 66 | 74 | 68 |
P value = 0.00733 (Fisher's exact test), Q value = 0.015
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 92 | 99 | 31 |
DEL PEAK 12(10Q21.1) MUTATED | 2 | 12 | 0 |
DEL PEAK 12(10Q21.1) WILD-TYPE | 90 | 87 | 31 |
P value = 0.00472 (Fisher's exact test), Q value = 0.011
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 56 | 42 | 59 | 57 | 29 | 29 |
DEL PEAK 13(11Q22.3) MUTATED | 7 | 3 | 2 | 4 | 9 | 5 |
DEL PEAK 13(11Q22.3) WILD-TYPE | 49 | 39 | 57 | 53 | 20 | 24 |
P value = 5e-05 (Fisher's exact test), Q value = 0.00022
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 32 | 90 | 70 | 32 | 64 |
DEL PEAK 13(11Q22.3) MUTATED | 1 | 3 | 6 | 3 | 18 |
DEL PEAK 13(11Q22.3) WILD-TYPE | 31 | 87 | 64 | 29 | 46 |
P value = 0.00243 (Fisher's exact test), Q value = 0.0067
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 123 | 47 |
DEL PEAK 13(11Q22.3) MUTATED | 17 | 5 | 9 |
DEL PEAK 13(11Q22.3) WILD-TYPE | 101 | 118 | 38 |
P value = 0.00672 (Fisher's exact test), Q value = 0.014
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 71 | 75 | 76 |
DEL PEAK 13(11Q22.3) MUTATED | 6 | 3 | 15 |
DEL PEAK 13(11Q22.3) WILD-TYPE | 65 | 72 | 61 |
P value = 0.00271 (Fisher's exact test), Q value = 0.007
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 92 | 99 | 31 |
DEL PEAK 13(11Q22.3) MUTATED | 6 | 18 | 0 |
DEL PEAK 13(11Q22.3) WILD-TYPE | 86 | 81 | 31 |
P value = 0.00047 (Fisher's exact test), Q value = 0.0016
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 56 | 42 | 59 | 57 | 29 | 29 |
DEL PEAK 14(11Q23.3) MUTATED | 6 | 3 | 1 | 3 | 9 | 6 |
DEL PEAK 14(11Q23.3) WILD-TYPE | 50 | 39 | 58 | 54 | 20 | 23 |
P value = 0.041 (Fisher's exact test), Q value = 0.067
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 39 | 66 | 65 | 43 |
DEL PEAK 14(11Q23.3) MUTATED | 3 | 3 | 13 | 4 |
DEL PEAK 14(11Q23.3) WILD-TYPE | 36 | 63 | 52 | 39 |
P value = 1e-04 (Fisher's exact test), Q value = 0.00039
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 32 | 90 | 70 | 32 | 64 |
DEL PEAK 14(11Q23.3) MUTATED | 1 | 2 | 6 | 3 | 17 |
DEL PEAK 14(11Q23.3) WILD-TYPE | 31 | 88 | 64 | 29 | 47 |
P value = 0.00159 (Fisher's exact test), Q value = 0.0046
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 123 | 47 |
DEL PEAK 14(11Q23.3) MUTATED | 17 | 4 | 8 |
DEL PEAK 14(11Q23.3) WILD-TYPE | 101 | 119 | 39 |
P value = 0.0319 (Fisher's exact test), Q value = 0.054
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 29 | 37 | 66 | 43 | 80 | 33 |
DEL PEAK 14(11Q23.3) MUTATED | 2 | 2 | 3 | 9 | 12 | 1 |
DEL PEAK 14(11Q23.3) WILD-TYPE | 27 | 35 | 63 | 34 | 68 | 32 |
P value = 0.0148 (Fisher's exact test), Q value = 0.028
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 71 | 75 | 76 |
DEL PEAK 14(11Q23.3) MUTATED | 6 | 3 | 14 |
DEL PEAK 14(11Q23.3) WILD-TYPE | 65 | 72 | 62 |
P value = 0.00573 (Fisher's exact test), Q value = 0.013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 92 | 99 | 31 |
DEL PEAK 14(11Q23.3) MUTATED | 6 | 17 | 0 |
DEL PEAK 14(11Q23.3) WILD-TYPE | 86 | 82 | 31 |
P value = 0.00016 (Fisher's exact test), Q value = 0.00061
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 106 | 73 | 49 | 60 |
DEL PEAK 15(14Q11.2) MUTATED | 23 | 2 | 10 | 16 |
DEL PEAK 15(14Q11.2) WILD-TYPE | 83 | 71 | 39 | 44 |
P value = 0.00119 (Fisher's exact test), Q value = 0.0036
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 56 | 42 | 59 | 57 | 29 | 29 |
DEL PEAK 15(14Q11.2) MUTATED | 13 | 5 | 4 | 5 | 8 | 11 |
DEL PEAK 15(14Q11.2) WILD-TYPE | 43 | 37 | 55 | 52 | 21 | 18 |
P value = 0.00447 (Fisher's exact test), Q value = 0.01
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 39 | 66 | 65 | 43 |
DEL PEAK 15(14Q11.2) MUTATED | 6 | 7 | 20 | 3 |
DEL PEAK 15(14Q11.2) WILD-TYPE | 33 | 59 | 45 | 40 |
P value = 1e-05 (Fisher's exact test), Q value = 5.4e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 32 | 90 | 70 | 32 | 64 |
DEL PEAK 15(14Q11.2) MUTATED | 4 | 4 | 11 | 6 | 26 |
DEL PEAK 15(14Q11.2) WILD-TYPE | 28 | 86 | 59 | 26 | 38 |
P value = 1e-05 (Fisher's exact test), Q value = 5.4e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 123 | 47 |
DEL PEAK 15(14Q11.2) MUTATED | 24 | 8 | 19 |
DEL PEAK 15(14Q11.2) WILD-TYPE | 94 | 115 | 28 |
P value = 0.0148 (Fisher's exact test), Q value = 0.028
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 92 | 99 | 31 |
DEL PEAK 15(14Q11.2) MUTATED | 11 | 25 | 2 |
DEL PEAK 15(14Q11.2) WILD-TYPE | 81 | 74 | 29 |
P value = 2e-05 (Fisher's exact test), Q value = 9.8e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 106 | 73 | 49 | 60 |
DEL PEAK 16(14Q24.2) MUTATED | 23 | 1 | 8 | 18 |
DEL PEAK 16(14Q24.2) WILD-TYPE | 83 | 72 | 41 | 42 |
P value = 4e-05 (Fisher's exact test), Q value = 0.00018
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 56 | 42 | 59 | 57 | 29 | 29 |
DEL PEAK 16(14Q24.2) MUTATED | 15 | 4 | 3 | 4 | 9 | 11 |
DEL PEAK 16(14Q24.2) WILD-TYPE | 41 | 38 | 56 | 53 | 20 | 18 |
P value = 0.0237 (Fisher's exact test), Q value = 0.042
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 75 | 82 | 56 |
DEL PEAK 16(14Q24.2) MUTATED | 20 | 9 | 7 |
DEL PEAK 16(14Q24.2) WILD-TYPE | 55 | 73 | 49 |
P value = 0.00271 (Fisher's exact test), Q value = 0.007
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 39 | 66 | 65 | 43 |
DEL PEAK 16(14Q24.2) MUTATED | 7 | 6 | 20 | 3 |
DEL PEAK 16(14Q24.2) WILD-TYPE | 32 | 60 | 45 | 40 |
P value = 1e-05 (Fisher's exact test), Q value = 5.4e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 32 | 90 | 70 | 32 | 64 |
DEL PEAK 16(14Q24.2) MUTATED | 4 | 3 | 9 | 7 | 27 |
DEL PEAK 16(14Q24.2) WILD-TYPE | 28 | 87 | 61 | 25 | 37 |
P value = 1e-05 (Fisher's exact test), Q value = 5.4e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 123 | 47 |
DEL PEAK 16(14Q24.2) MUTATED | 24 | 7 | 19 |
DEL PEAK 16(14Q24.2) WILD-TYPE | 94 | 116 | 28 |
P value = 0.0243 (Fisher's exact test), Q value = 0.043
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 29 | 37 | 66 | 43 | 80 | 33 |
DEL PEAK 16(14Q24.2) MUTATED | 2 | 5 | 7 | 14 | 18 | 4 |
DEL PEAK 16(14Q24.2) WILD-TYPE | 27 | 32 | 59 | 29 | 62 | 29 |
P value = 0.0153 (Fisher's exact test), Q value = 0.029
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 71 | 75 | 76 |
DEL PEAK 16(14Q24.2) MUTATED | 14 | 6 | 19 |
DEL PEAK 16(14Q24.2) WILD-TYPE | 57 | 69 | 57 |
P value = 0.00357 (Fisher's exact test), Q value = 0.0085
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 92 | 99 | 31 |
DEL PEAK 16(14Q24.2) MUTATED | 12 | 26 | 1 |
DEL PEAK 16(14Q24.2) WILD-TYPE | 80 | 73 | 30 |
P value = 0.00282 (Fisher's exact test), Q value = 0.0072
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 106 | 73 | 49 | 60 |
DEL PEAK 17(15Q13.3) MUTATED | 14 | 2 | 5 | 14 |
DEL PEAK 17(15Q13.3) WILD-TYPE | 92 | 71 | 44 | 46 |
P value = 3e-05 (Fisher's exact test), Q value = 0.00014
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 56 | 42 | 59 | 57 | 29 | 29 |
DEL PEAK 17(15Q13.3) MUTATED | 10 | 3 | 1 | 3 | 5 | 11 |
DEL PEAK 17(15Q13.3) WILD-TYPE | 46 | 39 | 58 | 54 | 24 | 18 |
P value = 0.0312 (Fisher's exact test), Q value = 0.053
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 39 | 66 | 65 | 43 |
DEL PEAK 17(15Q13.3) MUTATED | 4 | 5 | 16 | 4 |
DEL PEAK 17(15Q13.3) WILD-TYPE | 35 | 61 | 49 | 39 |
P value = 1e-05 (Fisher's exact test), Q value = 5.4e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 32 | 90 | 70 | 32 | 64 |
DEL PEAK 17(15Q13.3) MUTATED | 1 | 3 | 6 | 5 | 20 |
DEL PEAK 17(15Q13.3) WILD-TYPE | 31 | 87 | 64 | 27 | 44 |
P value = 1e-05 (Fisher's exact test), Q value = 5.4e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 123 | 47 |
DEL PEAK 17(15Q13.3) MUTATED | 16 | 4 | 15 |
DEL PEAK 17(15Q13.3) WILD-TYPE | 102 | 119 | 32 |
P value = 0.0174 (Fisher's exact test), Q value = 0.032
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 92 | 99 | 31 |
DEL PEAK 17(15Q13.3) MUTATED | 11 | 18 | 0 |
DEL PEAK 17(15Q13.3) WILD-TYPE | 81 | 81 | 31 |
P value = 0.00306 (Fisher's exact test), Q value = 0.0077
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 56 | 42 | 59 | 57 | 29 | 29 |
DEL PEAK 18(16Q24.2) MUTATED | 2 | 3 | 0 | 0 | 3 | 4 |
DEL PEAK 18(16Q24.2) WILD-TYPE | 54 | 39 | 59 | 57 | 26 | 25 |
P value = 0.00573 (Fisher's exact test), Q value = 0.013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 32 | 90 | 70 | 32 | 64 |
DEL PEAK 18(16Q24.2) MUTATED | 0 | 0 | 4 | 1 | 7 |
DEL PEAK 18(16Q24.2) WILD-TYPE | 32 | 90 | 66 | 31 | 57 |
P value = 0.0021 (Fisher's exact test), Q value = 0.0059
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 123 | 47 |
DEL PEAK 18(16Q24.2) MUTATED | 8 | 0 | 4 |
DEL PEAK 18(16Q24.2) WILD-TYPE | 110 | 123 | 43 |
P value = 0.0259 (Fisher's exact test), Q value = 0.045
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 71 | 75 | 76 |
DEL PEAK 18(16Q24.2) MUTATED | 6 | 0 | 5 |
DEL PEAK 18(16Q24.2) WILD-TYPE | 65 | 75 | 71 |
P value = 1e-05 (Fisher's exact test), Q value = 5.4e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 106 | 73 | 49 | 60 |
DEL PEAK 19(19P13.3) MUTATED | 3 | 1 | 4 | 15 |
DEL PEAK 19(19P13.3) WILD-TYPE | 103 | 72 | 45 | 45 |
P value = 0.003 (Fisher's exact test), Q value = 0.0076
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 56 | 42 | 59 | 57 | 29 | 29 |
DEL PEAK 19(19P13.3) MUTATED | 3 | 3 | 2 | 3 | 9 | 2 |
DEL PEAK 19(19P13.3) WILD-TYPE | 53 | 39 | 57 | 54 | 20 | 27 |
P value = 0.00396 (Fisher's exact test), Q value = 0.0094
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 32 | 90 | 70 | 32 | 64 |
DEL PEAK 19(19P13.3) MUTATED | 0 | 2 | 9 | 2 | 10 |
DEL PEAK 19(19P13.3) WILD-TYPE | 32 | 88 | 61 | 30 | 54 |
P value = 0.00442 (Fisher's exact test), Q value = 0.01
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 123 | 47 |
DEL PEAK 19(19P13.3) MUTATED | 17 | 4 | 2 |
DEL PEAK 19(19P13.3) WILD-TYPE | 101 | 119 | 45 |
P value = 1e-05 (Fisher's exact test), Q value = 5.4e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 106 | 73 | 49 | 60 |
DEL PEAK 20(19Q13.42) MUTATED | 2 | 0 | 5 | 12 |
DEL PEAK 20(19Q13.42) WILD-TYPE | 104 | 73 | 44 | 48 |
P value = 0.00068 (Fisher's exact test), Q value = 0.0023
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 56 | 42 | 59 | 57 | 29 | 29 |
DEL PEAK 20(19Q13.42) MUTATED | 3 | 3 | 0 | 3 | 8 | 2 |
DEL PEAK 20(19Q13.42) WILD-TYPE | 53 | 39 | 59 | 54 | 21 | 27 |
P value = 8e-05 (Fisher's exact test), Q value = 0.00033
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 32 | 90 | 70 | 32 | 64 |
DEL PEAK 20(19Q13.42) MUTATED | 0 | 0 | 5 | 2 | 12 |
DEL PEAK 20(19Q13.42) WILD-TYPE | 32 | 90 | 65 | 30 | 52 |
P value = 0.00344 (Fisher's exact test), Q value = 0.0084
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 123 | 47 |
DEL PEAK 20(19Q13.42) MUTATED | 14 | 2 | 3 |
DEL PEAK 20(19Q13.42) WILD-TYPE | 104 | 121 | 44 |
P value = 0.00658 (Fisher's exact test), Q value = 0.014
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 29 | 37 | 66 | 43 | 80 | 33 |
DEL PEAK 20(19Q13.42) MUTATED | 0 | 6 | 1 | 5 | 7 | 0 |
DEL PEAK 20(19Q13.42) WILD-TYPE | 29 | 31 | 65 | 38 | 73 | 33 |
P value = 0.00231 (Fisher's exact test), Q value = 0.0065
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 106 | 73 | 49 | 60 |
DEL PEAK 21(22Q12.2) MUTATED | 24 | 6 | 13 | 20 |
DEL PEAK 21(22Q12.2) WILD-TYPE | 82 | 67 | 36 | 40 |
P value = 1e-05 (Fisher's exact test), Q value = 5.4e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 56 | 42 | 59 | 57 | 29 | 29 |
DEL PEAK 21(22Q12.2) MUTATED | 9 | 8 | 1 | 6 | 22 | 14 |
DEL PEAK 21(22Q12.2) WILD-TYPE | 47 | 34 | 58 | 51 | 7 | 15 |
P value = 0.00637 (Fisher's exact test), Q value = 0.014
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 39 | 66 | 65 | 43 |
DEL PEAK 21(22Q12.2) MUTATED | 4 | 12 | 25 | 10 |
DEL PEAK 21(22Q12.2) WILD-TYPE | 35 | 54 | 40 | 33 |
P value = 1e-05 (Fisher's exact test), Q value = 5.4e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 32 | 90 | 70 | 32 | 64 |
DEL PEAK 21(22Q12.2) MUTATED | 2 | 5 | 16 | 7 | 33 |
DEL PEAK 21(22Q12.2) WILD-TYPE | 30 | 85 | 54 | 25 | 31 |
P value = 1e-05 (Fisher's exact test), Q value = 5.4e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 123 | 47 |
DEL PEAK 21(22Q12.2) MUTATED | 36 | 9 | 18 |
DEL PEAK 21(22Q12.2) WILD-TYPE | 82 | 114 | 29 |
P value = 5e-05 (Fisher's exact test), Q value = 0.00022
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 29 | 37 | 66 | 43 | 80 | 33 |
DEL PEAK 21(22Q12.2) MUTATED | 3 | 14 | 8 | 20 | 14 | 4 |
DEL PEAK 21(22Q12.2) WILD-TYPE | 26 | 23 | 58 | 23 | 66 | 29 |
P value = 0.00646 (Fisher's exact test), Q value = 0.014
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 92 | 99 | 31 |
DEL PEAK 21(22Q12.2) MUTATED | 21 | 28 | 1 |
DEL PEAK 21(22Q12.2) WILD-TYPE | 71 | 71 | 30 |
-
Copy number data file = all_lesions.txt from GISTIC pipeline
-
Processed Copy number data file = /xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/KIRP-TP/22533930/transformed.cor.cli.txt
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Molecular subtype file = /xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/KIRP-TP/22542911/KIRP-TP.transferedmergedcluster.txt
-
Number of patients = 288
-
Number of significantly focal cnvs = 28
-
Number of molecular subtypes = 10
-
Exclude genes that fewer than K tumors have alterations, K = 3
For binary or multi-class clinical features (nominal or ordinal), two-tailed Fisher's exact tests (Fisher 1922) were used to estimate the P values using the 'fisher.test' function in R
For multiple hypothesis correction, Q value is the False Discovery Rate (FDR) analogue of the P value (Benjamini and Hochberg 1995), defined as the minimum FDR at which the test may be called significant. We used the 'Benjamini and Hochberg' method of 'p.adjust' function in R to convert P values into Q values.
In addition to the links below, the full results of the analysis summarized in this report can also be downloaded programmatically using firehose_get, or interactively from either the Broad GDAC website or TCGA Data Coordination Center Portal.