GS SIZE SOURCE ES NES NOM p-val FDR q-val FWER p-val Tag % Gene % Signal FDR (median) glob.p.val KEGG_LYSOSOME 118 http://www.broadinstitute.org/gsea/msigdb/cards/KEGG_LYSOSOME 0.55213 1.8046 0.001984 0.39158 0.463 0.449 0.141 0.388 0 0.093 KEGG_FC_GAMMA_R_MEDIATED_PHAGOCYTOSIS 92 http://www.broadinstitute.org/gsea/msigdb/cards/KEGG_FC_GAMMA_R_MEDIATED_PHAGOCYTOSIS 0.53895 1.7522 0 0.32189 0.591 0.424 0.159 0.359 0.099641 0.079 BIOCARTA_HIVNEF_PATHWAY 58 http://www.broadinstitute.org/gsea/msigdb/cards/BIOCARTA_HIVNEF_PATHWAY 0.41669 1.7964 0.00994 0.36625 0.495 0.414 0.193 0.335 0 0.091 BIOCARTA_PYK2_PATHWAY 28 http://www.broadinstitute.org/gsea/msigdb/cards/BIOCARTA_PYK2_PATHWAY 0.5436 1.7329 0.01597 0.32372 0.632 0.643 0.23 0.496 0.11514 0.086 BIOCARTA_TOLL_PATHWAY 37 http://www.broadinstitute.org/gsea/msigdb/cards/BIOCARTA_TOLL_PATHWAY 0.61564 1.7768 0.009597 0.3789 0.529 0.486 0.178 0.401 0.097189 0.097 ST_TUMOR_NECROSIS_FACTOR_PATHWAY 28 http://www.broadinstitute.org/gsea/msigdb/cards/ST_TUMOR_NECROSIS_FACTOR_PATHWAY 0.5433 1.6991 0.02851 0.3176 0.699 0.5 0.215 0.393 0.11957 0.084 PID_IL1PATHWAY 34 http://www.broadinstitute.org/gsea/msigdb/cards/PID_IL1PATHWAY 0.57435 1.7639 0.009823 0.34644 0.569 0.382 0.172 0.317 0.097631 0.087 PID_IFNGPATHWAY 40 http://www.broadinstitute.org/gsea/msigdb/cards/PID_IFNGPATHWAY 0.52903 1.7194 0.01988 0.31986 0.663 0.55 0.254 0.411 0.1205 0.086 PID_IL8CXCR2_PATHWAY 34 http://www.broadinstitute.org/gsea/msigdb/cards/PID_IL8CXCR2_PATHWAY 0.60285 1.7176 0.01002 0.30648 0.669 0.588 0.205 0.469 0.11582 0.08 PID_MAPKTRKPATHWAY 32 http://www.broadinstitute.org/gsea/msigdb/cards/PID_MAPKTRKPATHWAY 0.6015 2.0117 0 0.38684 0.104 0.594 0.23 0.458 0 0.075 REACTOME_ANTIGEN_PROCESSING_CROSS_PRESENTATION 72 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_ANTIGEN_PROCESSING_CROSS_PRESENTATION 0.53985 1.7602 0.00818 0.32788 0.572 0.569 0.264 0.421 0.090594 0.081 REACTOME_REGULATION_OF_ORNITHINE_DECARBOXYLASE_ODC 48 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_REGULATION_OF_ORNITHINE_DECARBOXYLASE_ODC 0.53169 1.7163 0.04331 0.29295 0.67 0.604 0.285 0.433 0.11156 0.075 REACTOME_IL1_SIGNALING 39 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_IL1_SIGNALING 0.59396 1.7725 0.008081 0.35395 0.544 0.462 0.211 0.365 0.096095 0.087 REACTOME_TRAF6_MEDIATED_INDUCTION_OF_NFKB_AND_MAP_KINASES_UPON_TLR7_8_OR_9_ACTIVATION 74 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_TRAF6_MEDIATED_INDUCTION_OF_NFKB_AND_MAP_KINASES_UPON_TLR7_8_OR_9_ACTIVATION 0.49648 1.8099 0.00813 0.43847 0.45 0.189 0.107 0.17 0 0.108 REACTOME_NFKB_AND_MAP_KINASES_ACTIVATION_MEDIATED_BY_TLR4_SIGNALING_REPERTOIRE 69 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_NFKB_AND_MAP_KINASES_ACTIVATION_MEDIATED_BY_TLR4_SIGNALING_REPERTOIRE 0.50505 1.751 0.008421 0.3017 0.593 0.304 0.175 0.252 0.094326 0.071 REACTOME_MYD88_MAL_CASCADE_INITIATED_ON_PLASMA_MEMBRANE 80 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_MYD88_MAL_CASCADE_INITIATED_ON_PLASMA_MEMBRANE 0.52348 1.8675 0.006098 0.39422 0.329 0.325 0.175 0.27 0 0.089 REACTOME_INNATE_IMMUNE_SYSTEM 209 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_INNATE_IMMUNE_SYSTEM 0.56469 1.8385 0.001946 0.41009 0.39 0.325 0.15 0.28 0 0.095 REACTOME_ACTIVATED_TLR4_SIGNALLING 90 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_ACTIVATED_TLR4_SIGNALLING 0.54093 1.8855 0.002037 0.45118 0.29 0.244 0.116 0.217 0 0.099 REACTOME_TOLL_RECEPTOR_CASCADES 113 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_TOLL_RECEPTOR_CASCADES 0.59034 1.9144 0 0.51498 0.235 0.283 0.123 0.25 0 0.108 REACTOME_NUCLEOTIDE_BINDING_DOMAIN_LEUCINE_RICH_REPEAT_CONTAINING_RECEPTOR_NLR_SIGNALING_PATHWAYS 45 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_NUCLEOTIDE_BINDING_DOMAIN_LEUCINE_RICH_REPEAT_CONTAINING_RECEPTOR_NLR_SIGNALING_PATHWAYS 0.57605 1.7284 0.007737 0.31519 0.641 0.267 0.0685 0.249 0.11359 0.082