name	nmut	n_coding	n_flank	n_coding_nonsilent	fracflank	callscheme	callscheme_name	N_tot	nsil_tot	nnon_tot	rate_sil	rate_non
TCGA-18-3406-01A-01D-0983-08	316	305	11	228	3.481013e-02	1	exome+100bp flanks	34834024	75	221	2.153067e-06	6.344372e-06
TCGA-18-3407-01A-01D-0983-08	172	167	5	128	2.906977e-02	0	coding only	34834024	37	119	1.062180e-06	3.416200e-06
TCGA-18-3408-01A-01D-0983-08	110	104	6	84	5.454545e-02	1	exome+100bp flanks	34834024	19	75	5.454437e-07	2.153067e-06
TCGA-18-3409-01A-01D-0983-08	3731	3647	84	2448	2.251407e-02	0	coding only	34834024	1144	2329	3.284145e-05	6.685992e-05
TCGA-18-3410-01A-01D-0983-08	312	307	5	236	1.602564e-02	0	coding only	34834024	67	223	1.923407e-06	6.401787e-06
TCGA-18-3411-01A-01D-0983-08	437	424	13	324	2.974828e-02	0	coding only	34834024	98	304	2.813341e-06	8.727100e-06
TCGA-18-3412-01A-01D-0983-08	211	205	6	161	2.843602e-02	0	coding only	34834024	43	155	1.234425e-06	4.449673e-06
TCGA-18-3414-01A-01D-0983-08	407	395	12	315	2.948403e-02	0	coding only	34834024	78	296	2.239190e-06	8.497439e-06
TCGA-18-3415-01A-01D-0983-08	211	209	2	158	9.478673e-03	0	coding only	34834024	49	148	1.406671e-06	4.248720e-06
TCGA-18-3416-01A-01D-0983-08	515	502	13	382	2.524272e-02	0	coding only	34834024	112	367	3.215247e-06	1.053568e-05
TCGA-18-3417-01A-01D-1441-08	336	330	6	261	1.785714e-02	0	coding only	34834024	67	251	1.923407e-06	7.205599e-06
TCGA-18-3419-01A-01D-0983-08	457	449	8	344	1.750547e-02	0	coding only	34834024	101	327	2.899464e-06	9.387374e-06
TCGA-18-3421-01A-01D-0983-08	460	448	12	343	2.608696e-02	0	coding only	34834024	98	316	2.813341e-06	9.071590e-06
TCGA-18-4083-01A-01D-1352-08	355	348	7	281	1.971831e-02	0	coding only	34834024	62	264	1.779869e-06	7.578797e-06
TCGA-18-4086-01A-01D-1352-08	197	193	4	144	2.030457e-02	0	coding only	34834024	48	137	1.377963e-06	3.932936e-06
TCGA-18-4721-01A-01D-1441-08	202	193	9	140	4.455446e-02	1	exome+100bp flanks	34834024	52	130	1.492793e-06	3.731983e-06
TCGA-18-5592-01A-01D-1632-08	329	323	6	262	1.823708e-02	0	coding only	34834024	58	249	1.665039e-06	7.148184e-06
TCGA-18-5595-01A-01D-1632-08	278	266	12	194	4.316547e-02	1	exome+100bp flanks	34834024	69	184	1.980822e-06	5.282192e-06
TCGA-21-1070-01A-01D-1521-08	551	541	10	437	1.814882e-02	0	coding only	34834024	97	407	2.784634e-06	1.168398e-05
TCGA-21-1071-01A-01D-1521-08	211	207	4	169	1.895735e-02	0	coding only	34834024	36	161	1.033472e-06	4.621918e-06
TCGA-21-1076-01A-02D-1521-08	348	342	6	268	1.724138e-02	0	coding only	34834024	72	254	2.066945e-06	7.291721e-06
TCGA-21-1077-01A-01D-1521-08	244	233	11	176	4.508197e-02	1	exome+100bp flanks	34834024	55	165	1.578916e-06	4.736748e-06
TCGA-21-1078-01A-01D-1521-08	90	89	1	70	1.111111e-02	0	coding only	34834024	18	63	5.167362e-07	1.808577e-06
TCGA-21-1081-01A-01D-1521-08	216	210	6	166	2.777778e-02	0	coding only	34834024	42	159	1.205718e-06	4.564503e-06
TCGA-21-5782-01A-01D-1632-08	444	439	5	340	1.126126e-02	0	coding only	34834024	90	323	2.583681e-06	9.272543e-06
TCGA-21-5784-01A-01D-1632-08	243	240	3	187	1.234568e-02	0	coding only	34834024	50	177	1.435378e-06	5.081239e-06
TCGA-21-5786-01A-01D-1632-08	436	423	13	334	2.981651e-02	0	coding only	34834024	87	315	2.497558e-06	9.042883e-06
TCGA-21-5787-01A-01D-1632-08	469	461	8	361	1.705757e-02	0	coding only	34834024	99	344	2.842049e-06	9.875402e-06
TCGA-22-0944-01A-01D-1521-08	145	143	2	107	1.379310e-02	0	coding only	34834024	36	99	1.033472e-06	2.842049e-06
TCGA-22-1002-01A-01D-1521-08	258	254	4	202	1.550388e-02	0	coding only	34834024	49	192	1.406671e-06	5.511852e-06
TCGA-22-1011-01A-01D-1521-08	121	119	2	91	1.652893e-02	0	coding only	34834024	26	87	7.463967e-07	2.497558e-06
TCGA-22-1012-01A-01D-1521-08	314	302	12	231	3.821656e-02	1	exome+100bp flanks	34834024	70	220	2.009530e-06	6.315664e-06
TCGA-22-1016-01A-01D-1521-08	385	378	7	290	1.818182e-02	0	coding only	34834024	86	279	2.468851e-06	8.009411e-06
TCGA-22-4591-01A-01D-1267-08	285	280	5	206	1.754386e-02	0	coding only	34834024	71	199	2.038237e-06	5.712805e-06
TCGA-22-4593-01A-21D-1817-08	220	216	4	161	1.818182e-02	0	coding only	34834024	53	151	1.521501e-06	4.334842e-06
TCGA-22-4595-01A-01D-1267-08	380	368	12	277	3.157895e-02	1	exome+100bp flanks	34834024	83	263	2.382728e-06	7.550090e-06
TCGA-22-4599-01A-01D-1441-08	430	425	5	325	1.162791e-02	0	coding only	34834024	94	306	2.698511e-06	8.784515e-06
TCGA-22-4601-01A-01D-1441-08	237	228	9	172	3.797468e-02	1	exome+100bp flanks	34834024	54	165	1.550208e-06	4.736748e-06
TCGA-22-4604-01A-01D-1267-08	299	292	7	229	2.341137e-02	0	coding only	34834024	63	220	1.808577e-06	6.315664e-06
TCGA-22-4607-01A-01D-1267-08	102	100	2	83	1.960784e-02	0	coding only	34834024	16	78	4.593210e-07	2.239190e-06
TCGA-22-4613-01A-01D-1441-08	723	707	16	546	2.213001e-02	0	coding only	34834024	151	524	4.334842e-06	1.504276e-05
TCGA-22-5471-01A-01D-1632-08	291	284	7	216	2.405498e-02	0	coding only	34834024	65	207	1.865992e-06	5.942466e-06
TCGA-22-5472-01A-01D-1632-08	468	455	13	320	2.777778e-02	0	coding only	34834024	133	307	3.818106e-06	8.813222e-06
TCGA-22-5473-01A-01D-1632-08	944	920	24	676	2.542373e-02	0	coding only	34834024	227	641	6.516617e-06	1.840155e-05
TCGA-22-5474-01A-01D-1632-08	110	109	1	89	9.090909e-03	0	coding only	34834024	18	84	5.167362e-07	2.411435e-06
TCGA-22-5477-01A-01D-1632-08	204	200	4	141	1.960784e-02	0	coding only	34834024	59	136	1.693746e-06	3.904229e-06
TCGA-22-5478-01A-01D-1632-08	216	208	8	159	3.703704e-02	1	exome+100bp flanks	34834024	46	150	1.320548e-06	4.306135e-06
TCGA-22-5480-01A-01D-1632-08	180	177	3	138	1.666667e-02	0	coding only	34834024	36	132	1.033472e-06	3.789399e-06
TCGA-22-5482-01A-01D-1632-08	192	187	5	142	2.604167e-02	0	coding only	34834024	39	131	1.119595e-06	3.760691e-06
TCGA-22-5485-01A-01D-1632-08	241	237	4	181	1.659751e-02	0	coding only	34834024	53	172	1.521501e-06	4.937701e-06
TCGA-22-5489-01A-01D-1632-08	282	274	8	210	2.836879e-02	0	coding only	34834024	60	196	1.722454e-06	5.626683e-06
TCGA-22-5491-01A-01D-1632-08	405	399	6	314	1.481481e-02	0	coding only	34834024	83	296	2.382728e-06	8.497439e-06
TCGA-22-5492-01A-01D-1632-08	258	253	5	193	1.937984e-02	0	coding only	34834024	59	187	1.693746e-06	5.368315e-06
TCGA-33-4532-01A-01D-1267-08	447	432	15	334	3.355705e-02	1	exome+100bp flanks	34834024	92	315	2.641096e-06	9.042883e-06
TCGA-33-4533-01A-01D-1267-08	335	323	12	253	3.582090e-02	1	exome+100bp flanks	34834024	66	244	1.894699e-06	7.004646e-06
TCGA-33-4538-01A-01D-1267-08	224	218	6	166	2.678571e-02	0	coding only	34834024	50	157	1.435378e-06	4.507088e-06
TCGA-33-4547-01A-01D-1267-08	245	241	4	180	1.632653e-02	0	coding only	34834024	59	167	1.693746e-06	4.794163e-06
TCGA-33-4566-01A-01D-1441-08	1449	1416	33	1102	2.277433e-02	0	coding only	34834024	301	1062	8.640977e-06	3.048743e-05
TCGA-33-4582-01A-01D-1441-08	242	234	8	168	3.305785e-02	1	exome+100bp flanks	34834024	65	158	1.865992e-06	4.535795e-06
TCGA-33-4583-01A-01D-1441-08	625	611	14	459	2.240000e-02	0	coding only	34834024	146	437	4.191304e-06	1.254521e-05
TCGA-33-4586-01A-01D-1441-08	425	413	12	301	2.823529e-02	0	coding only	34834024	106	290	3.043002e-06	8.325194e-06
TCGA-33-6737-01A-11D-1817-08	518	504	14	382	2.702703e-02	0	coding only	34834024	115	372	3.301370e-06	1.067921e-05
TCGA-34-2596-01A-01D-1522-08	312	302	10	219	3.205128e-02	1	exome+100bp flanks	34834024	80	203	2.296605e-06	5.827636e-06
TCGA-34-2600-01A-01D-1522-08	579	570	9	451	1.554404e-02	0	coding only	34834024	113	433	3.243955e-06	1.243038e-05
TCGA-34-2608-01A-02D-1522-08	186	181	5	131	2.688172e-02	0	coding only	34834024	48	122	1.377963e-06	3.502323e-06
TCGA-34-5231-01A-21D-1817-08	749	740	9	566	1.201602e-02	0	coding only	34834024	165	541	4.736748e-06	1.553079e-05
TCGA-34-5232-01A-21D-1817-08	229	225	4	158	1.746725e-02	0	coding only	34834024	67	154	1.923407e-06	4.420965e-06
TCGA-34-5234-01A-01D-1632-08	215	211	4	164	1.860465e-02	0	coding only	34834024	43	160	1.234425e-06	4.593210e-06
TCGA-34-5236-01A-21D-1817-08	256	247	9	183	3.515625e-02	1	exome+100bp flanks	34834024	62	176	1.779869e-06	5.052531e-06
TCGA-34-5239-01A-21D-1817-08	277	268	9	208	3.249097e-02	1	exome+100bp flanks	34834024	56	201	1.607624e-06	5.770221e-06
TCGA-34-5240-01A-01D-1441-08	202	196	6	141	2.970297e-02	0	coding only	34834024	54	135	1.550208e-06	3.875521e-06
TCGA-34-5241-01A-01D-1441-08	2	2	0	1	0	0	coding only	34834024	1	1	2.870756e-08	2.870756e-08
TCGA-34-5927-01A-11D-1817-08	324	320	4	248	1.234568e-02	0	coding only	34834024	69	229	1.980822e-06	6.574032e-06
TCGA-34-5928-01A-11D-1817-08	454	448	6	336	1.321586e-02	0	coding only	34834024	107	322	3.071709e-06	9.243836e-06
TCGA-34-5929-01A-11D-1817-08	241	236	5	180	2.074689e-02	0	coding only	34834024	53	168	1.521501e-06	4.822871e-06
TCGA-37-3783-01A-01D-1267-08	455	439	16	319	3.516484e-02	1	exome+100bp flanks	34834024	117	299	3.358785e-06	8.583562e-06
TCGA-37-3789-01A-01D-0983-08	500	484	16	387	3.200000e-02	1	exome+100bp flanks	34834024	90	370	2.583681e-06	1.062180e-05
TCGA-37-4133-01A-01D-1352-08	337	328	9	248	2.670623e-02	0	coding only	34834024	79	233	2.267898e-06	6.688863e-06
TCGA-37-4135-01A-01D-1352-08	337	330	7	250	2.077151e-02	0	coding only	34834024	76	239	2.181775e-06	6.861108e-06
TCGA-37-4141-01A-02D-1352-08	379	371	8	293	2.110818e-02	0	coding only	34834024	75	281	2.153067e-06	8.066826e-06
TCGA-37-5819-01A-01D-1632-08	845	829	16	661	1.893491e-02	0	coding only	34834024	159	634	4.564503e-06	1.820060e-05
TCGA-39-5016-01A-01D-1441-08	418	402	16	291	3.827751e-02	1	exome+100bp flanks	34834024	104	274	2.985587e-06	7.865873e-06
TCGA-39-5019-01A-01D-1817-08	220	217	3	160	1.363636e-02	0	coding only	34834024	54	153	1.550208e-06	4.392257e-06
TCGA-39-5021-01A-01D-1441-08	166	164	2	119	1.204819e-02	0	coding only	34834024	44	111	1.263133e-06	3.186540e-06
TCGA-39-5022-01A-21D-1817-08	332	327	5	257	1.506024e-02	0	coding only	34834024	70	242	2.009530e-06	6.947231e-06
TCGA-39-5024-01A-21D-1817-08	257	250	7	183	2.723735e-02	0	coding only	34834024	66	177	1.894699e-06	5.081239e-06
TCGA-39-5027-01A-21D-1817-08	380	372	8	296	2.105263e-02	0	coding only	34834024	72	281	2.066945e-06	8.066826e-06
TCGA-39-5028-01A-01D-1441-08	228	224	4	176	1.754386e-02	0	coding only	34834024	45	168	1.291840e-06	4.822871e-06
TCGA-39-5029-01A-01D-1441-08	170	168	2	135	1.176471e-02	0	coding only	34834024	33	126	9.473496e-07	3.617153e-06
TCGA-39-5030-01A-01D-1441-08	327	325	2	245	6.116208e-03	0	coding only	34834024	75	236	2.153067e-06	6.774985e-06
TCGA-39-5031-01A-01D-1441-08	749	735	14	544	1.869159e-02	0	coding only	34834024	182	510	5.224777e-06	1.464086e-05
TCGA-39-5035-01A-01D-1441-08	183	182	1	135	5.464481e-03	0	coding only	34834024	44	130	1.263133e-06	3.731983e-06
TCGA-39-5036-01A-01D-1441-08	338	331	7	263	2.071006e-02	0	coding only	34834024	67	244	1.923407e-06	7.004646e-06
TCGA-39-5037-01A-01D-1441-08	285	277	8	212	2.807018e-02	0	coding only	34834024	60	202	1.722454e-06	5.798928e-06
TCGA-39-5039-01A-01D-1441-08	195	192	3	144	1.538462e-02	0	coding only	34834024	48	138	1.377963e-06	3.961644e-06
TCGA-43-2578-01A-01D-1522-08	357	347	10	266	2.801120e-02	0	coding only	34834024	77	254	2.210482e-06	7.291721e-06
TCGA-43-3394-01A-01D-0983-08	178	174	4	138	2.247191e-02	0	coding only	34834024	33	129	9.473496e-07	3.703276e-06
TCGA-43-3920-01A-01D-0983-08	351	347	4	262	1.139601e-02	0	coding only	34834024	82	241	2.354020e-06	6.918523e-06
TCGA-43-5668-01A-01D-1632-08	720	707	13	545	1.805556e-02	0	coding only	34834024	151	518	4.334842e-06	1.487052e-05
TCGA-43-6143-01A-11D-1817-08	369	364	5	284	1.355014e-02	0	coding only	34834024	77	269	2.210482e-06	7.722335e-06
TCGA-43-6647-01A-11D-1817-08	199	190	9	146	4.522613e-02	1	exome+100bp flanks	34834024	43	142	1.234425e-06	4.076474e-06
TCGA-43-6770-01A-11D-1817-08	259	250	9	189	3.474903e-02	1	exome+100bp flanks	34834024	59	182	1.693746e-06	5.224777e-06
TCGA-43-6771-01A-11D-1817-08	221	218	3	175	1.357466e-02	0	coding only	34834024	43	171	1.234425e-06	4.908994e-06
TCGA-46-3765-01A-01D-0983-08	381	374	7	288	1.837270e-02	0	coding only	34834024	81	272	2.325313e-06	7.808458e-06
TCGA-46-3766-01A-01D-0983-08	1	1	0	1	0	0	coding only	34834024	0	0	0	0
TCGA-46-3767-01A-01D-0983-08	246	239	7	176	2.845528e-02	0	coding only	34834024	55	169	1.578916e-06	4.851578e-06
TCGA-46-3768-01A-01D-0983-08	406	394	12	290	2.955665e-02	0	coding only	34834024	98	275	2.813341e-06	7.894580e-06
TCGA-46-3769-01A-01D-0983-08	1027	1005	22	745	2.142162e-02	0	coding only	34834024	250	712	7.176891e-06	2.043979e-05
TCGA-46-6025-01A-11D-1817-08	219	215	4	170	1.826484e-02	0	coding only	34834024	44	161	1.263133e-06	4.621918e-06
TCGA-46-6026-01A-11D-1817-08	240	238	2	185	8.333333e-03	0	coding only	34834024	51	181	1.464086e-06	5.196069e-06
TCGA-51-4079-01A-01D-1458-08	432	421	11	328	2.546296e-02	0	coding only	34834024	90	321	2.583681e-06	9.215128e-06
TCGA-51-4080-01A-01D-1458-08	324	313	11	249	3.395062e-02	1	exome+100bp flanks	34834024	61	235	1.751161e-06	6.746278e-06
TCGA-51-4081-01A-01D-1458-08	231	227	4	176	1.731602e-02	0	coding only	34834024	48	168	1.377963e-06	4.822871e-06
TCGA-56-1622-01A-01D-1521-08	246	241	5	176	2.032520e-02	0	coding only	34834024	61	168	1.751161e-06	4.822871e-06
TCGA-56-5897-01A-11D-1632-08	130	127	3	94	2.307692e-02	0	coding only	34834024	31	91	8.899345e-07	2.612388e-06
TCGA-56-5898-01A-11D-1632-08	170	167	3	128	1.764706e-02	0	coding only	34834024	38	123	1.090887e-06	3.531030e-06
TCGA-56-6545-01A-11D-1817-08	326	323	3	257	9.202454e-03	0	coding only	34834024	63	245	1.808577e-06	7.033353e-06
TCGA-56-6546-01A-11D-1817-08	370	357	13	274	3.513514e-02	1	exome+100bp flanks	34834024	81	260	2.325313e-06	7.463967e-06
TCGA-60-2698-01A-01D-1522-08	1392	1369	23	1056	1.652299e-02	0	coding only	34834024	297	1003	8.526147e-06	2.879369e-05
TCGA-60-2707-01A-01D-1522-08	145	140	5	106	3.448276e-02	1	exome+100bp flanks	34834024	33	104	9.473496e-07	2.985587e-06
TCGA-60-2708-01A-01D-1522-08	235	229	6	172	2.553191e-02	0	coding only	34834024	55	164	1.578916e-06	4.708041e-06
TCGA-60-2709-01A-21D-1817-08	219	213	6	157	2.739726e-02	0	coding only	34834024	53	148	1.521501e-06	4.248720e-06
TCGA-60-2710-01A-01D-1522-08	229	223	6	177	2.620087e-02	0	coding only	34834024	42	166	1.205718e-06	4.765456e-06
TCGA-60-2711-01A-01D-1522-08	149	148	1	100	6.711409e-03	0	coding only	34834024	46	96	1.320548e-06	2.755926e-06
TCGA-60-2712-01A-01D-1522-08	101	99	2	76	1.980198e-02	0	coding only	34834024	22	72	6.315664e-07	2.066945e-06
TCGA-60-2713-01A-01D-1522-08	285	282	3	214	1.052632e-02	0	coding only	34834024	66	205	1.894699e-06	5.885051e-06
TCGA-60-2715-01A-01D-1522-08	192	190	2	142	1.041667e-02	0	coding only	34834024	47	138	1.349256e-06	3.961644e-06
TCGA-60-2719-01A-01D-1522-08	226	221	5	165	2.212389e-02	0	coding only	34834024	53	157	1.521501e-06	4.507088e-06
TCGA-60-2720-01A-01D-1522-08	460	450	10	362	2.173913e-02	0	coding only	34834024	87	342	2.497558e-06	9.817987e-06
TCGA-60-2721-01A-01D-1522-08	97	94	3	70	3.092784e-02	0	coding only	34834024	23	66	6.602740e-07	1.894699e-06
TCGA-60-2722-01A-01D-1522-08	358	350	8	279	2.234637e-02	0	coding only	34834024	68	263	1.952114e-06	7.550090e-06
TCGA-60-2723-01A-01D-1522-08	313	307	6	242	1.916933e-02	0	coding only	34834024	63	230	1.808577e-06	6.602740e-06
TCGA-60-2724-01A-01D-1522-08	356	349	7	273	1.966292e-02	0	coding only	34834024	76	260	2.181775e-06	7.463967e-06
TCGA-60-2725-01A-01D-1267-08	188	184	4	134	2.127660e-02	0	coding only	34834024	48	129	1.377963e-06	3.703276e-06
TCGA-60-2726-01A-01D-1522-08	330	322	8	238	2.424242e-02	0	coding only	34834024	76	230	2.181775e-06	6.602740e-06
TCGA-63-5128-01A-01D-1441-08	351	343	8	269	2.279202e-02	0	coding only	34834024	69	252	1.980822e-06	7.234306e-06
TCGA-63-5131-01A-01D-1441-08	316	311	5	255	1.582278e-02	0	coding only	34834024	51	240	1.464086e-06	6.889816e-06
TCGA-63-6202-01A-11D-1817-08	391	375	16	298	4.092072e-02	1	exome+100bp flanks	34834024	77	280	2.210482e-06	8.038118e-06
TCGA-66-2727-01A-01D-0983-08	271	264	7	196	2.583026e-02	0	coding only	34834024	65	191	1.865992e-06	5.483145e-06
TCGA-66-2734-01A-01D-0983-08	338	325	13	253	3.846154e-02	1	exome+100bp flanks	34834024	69	249	1.980822e-06	7.148184e-06
TCGA-66-2742-01A-01D-0983-08	254	248	6	187	2.362205e-02	0	coding only	34834024	56	176	1.607624e-06	5.052531e-06
TCGA-66-2744-01A-01D-0983-08	295	287	8	225	2.711864e-02	0	coding only	34834024	60	216	1.722454e-06	6.200834e-06
TCGA-66-2754-01A-01D-0983-08	350	342	8	263	2.285714e-02	0	coding only	34834024	77	247	2.210482e-06	7.090768e-06
TCGA-66-2755-01A-01D-1522-08	232	229	3	172	1.293103e-02	0	coding only	34834024	53	164	1.521501e-06	4.708041e-06
TCGA-66-2756-01A-01D-1522-08	551	538	13	429	2.359347e-02	0	coding only	34834024	105	413	3.014294e-06	1.185622e-05
TCGA-66-2757-01A-01D-1522-08	290	280	10	221	3.448276e-02	1	exome+100bp flanks	34834024	56	216	1.607624e-06	6.200834e-06
TCGA-66-2758-01A-02D-1522-08	388	379	9	283	2.319588e-02	0	coding only	34834024	91	266	2.612388e-06	7.636212e-06
TCGA-66-2759-01A-01D-1522-08	505	492	13	378	2.574257e-02	0	coding only	34834024	108	350	3.100417e-06	1.004765e-05
TCGA-66-2763-01A-01D-1522-08	452	441	11	350	2.433628e-02	0	coding only	34834024	88	334	2.526266e-06	9.588327e-06
TCGA-66-2765-01A-01D-1522-08	114	112	2	90	1.754386e-02	0	coding only	34834024	20	85	5.741513e-07	2.440143e-06
TCGA-66-2766-01A-01D-1522-08	441	431	10	322	2.267574e-02	0	coding only	34834024	105	302	3.014294e-06	8.669685e-06
TCGA-66-2767-01A-01D-1522-08	386	379	7	292	1.813472e-02	0	coding only	34834024	84	278	2.411435e-06	7.980703e-06
TCGA-66-2768-01A-01D-1522-08	296	286	10	223	3.378378e-02	1	exome+100bp flanks	34834024	59	214	1.693746e-06	6.143419e-06
TCGA-66-2770-01A-01D-1522-08	276	270	6	193	2.173913e-02	0	coding only	34834024	72	184	2.066945e-06	5.282192e-06
TCGA-66-2771-01A-01D-0983-08	303	293	10	220	3.300330e-02	1	exome+100bp flanks	34834024	72	210	2.066945e-06	6.028589e-06
TCGA-66-2773-01A-01D-1267-08	683	674	9	495	1.317716e-02	0	coding only	34834024	174	472	4.995116e-06	1.354997e-05
TCGA-66-2777-01A-01D-1267-08	223	218	5	160	2.242152e-02	0	coding only	34834024	56	154	1.607624e-06	4.420965e-06
TCGA-66-2778-01A-02D-1522-08	173	167	6	118	3.468208e-02	1	exome+100bp flanks	34834024	47	109	1.349256e-06	3.129125e-06
TCGA-66-2780-01A-01D-1522-08	146	143	3	108	2.054795e-02	0	coding only	34834024	31	101	8.899345e-07	2.899464e-06
TCGA-66-2781-01A-01D-1522-08	166	165	1	131	6.024096e-03	0	coding only	34834024	32	123	9.186421e-07	3.531030e-06
TCGA-66-2782-01A-01D-1522-08	394	390	4	294	1.015228e-02	0	coding only	34834024	93	284	2.669804e-06	8.152948e-06
TCGA-66-2783-01A-01D-1267-08	273	268	5	213	1.831502e-02	0	coding only	34834024	50	210	1.435378e-06	6.028589e-06
TCGA-66-2785-01A-01D-1522-08	1331	1317	14	1057	1.051841e-02	0	coding only	34834024	245	984	7.033353e-06	2.824824e-05
TCGA-66-2786-01A-01D-1522-08	267	262	5	208	1.872659e-02	0	coding only	34834024	53	194	1.521501e-06	5.569268e-06
TCGA-66-2787-01A-01D-0983-08	591	569	22	472	3.722504e-02	1	exome+100bp flanks	34834024	91	452	2.612388e-06	1.297582e-05
TCGA-66-2788-01A-01D-0983-08	224	219	5	172	2.232143e-02	0	coding only	34834024	44	162	1.263133e-06	4.650625e-06
TCGA-66-2789-01A-01D-0983-08	400	391	9	296	2.250000e-02	0	coding only	34834024	89	283	2.554973e-06	8.124241e-06
TCGA-66-2791-01A-01D-0983-08	388	380	8	288	2.061856e-02	0	coding only	34834024	90	269	2.583681e-06	7.722335e-06
TCGA-66-2792-01A-01D-0983-08	195	192	3	141	1.538462e-02	0	coding only	34834024	47	138	1.349256e-06	3.961644e-06
TCGA-66-2793-01A-01D-1267-08	358	349	9	275	2.513966e-02	0	coding only	34834024	70	262	2.009530e-06	7.521382e-06
TCGA-66-2794-01A-01D-1267-08	180	176	4	138	2.222222e-02	0	coding only	34834024	36	129	1.033472e-06	3.703276e-06
TCGA-66-2795-01A-02D-0983-08	421	411	10	316	2.375297e-02	0	coding only	34834024	90	306	2.583681e-06	8.784515e-06
TCGA-66-2800-01A-01D-1267-08	270	263	7	199	2.592593e-02	0	coding only	34834024	61	185	1.751161e-06	5.310899e-06
TCGA-70-6722-01A-11D-1817-08	321	312	9	251	2.803738e-02	0	coding only	34834024	59	236	1.693746e-06	6.774985e-06
TCGA-70-6723-01A-11D-1817-08	135	130	5	102	3.703704e-02	1	exome+100bp flanks	34834024	25	93	7.176891e-07	2.669804e-06
TCGA-85-6175-01A-11D-1817-08	64	59	5	43	7.812500e-02	0	coding only	34834024	16	40	4.593210e-07	1.148303e-06
TCGA-85-6560-01A-11D-1817-08	495	480	15	388	3.030303e-02	1	exome+100bp flanks	34834024	89	369	2.554973e-06	1.059309e-05
TCGA-85-6561-01A-11D-1817-08	979	965	14	716	1.430031e-02	0	coding only	34834024	238	688	6.832400e-06	1.975080e-05